BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004971
(721 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558602|ref|XP_002520326.1| conserved hypothetical protein [Ricinus communis]
gi|223540545|gb|EEF42112.1| conserved hypothetical protein [Ricinus communis]
Length = 708
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/714 (69%), Positives = 572/714 (80%), Gaps = 20/714 (2%)
Query: 10 LLYLLSAVFRATADEDSSS--RSSIIFTTLG-RSDYAFDIYTLPISDRPTTANEIKITDG 66
L+LL + A+AD SSS R+SIIF TLG RS AFDI+ LP + P ++NEI+ITDG
Sbjct: 9 FLFLLVDISSASADHGSSSSGRTSIIFATLGSRSSNAFDIFALPTTTPPDSSNEIQITDG 68
Query: 67 ESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAV 126
+S++FNGHFPSP+S L L NQTLI S Q+S + +IYVTER G+S IY D +
Sbjct: 69 KSLSFNGHFPSPTS--LVSLFPNQTLIHSSAHQNSAS---ITVIYVTERGGSSTIYLDVL 123
Query: 127 YYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHE 186
YDT R+ RSR+AL E RVQ+PLL N V +S KDKP ++G YL+Y+STHE
Sbjct: 124 SYDTARSARSRSAL-----ETPPRVQIPLLKGNNVG---VSFKDKPTINGNYLVYLSTHE 175
Query: 187 NPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEM 246
+ G PR SWAAVYSTEL TGLTRRLTPYGVADFSPAVSPSG YTAVASYG GW GEVE+
Sbjct: 176 DAGKPRASWAAVYSTELNTGLTRRLTPYGVADFSPAVSPSGVYTAVASYGEAGWKGEVEL 235
Query: 247 LSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVS 306
LSTDIYIFLTR+GT+RVKI+ENGGWP WVD+STL+FHR SE+D WISVY+ LP +S
Sbjct: 236 LSTDIYIFLTRNGTRRVKIIENGGWPSWVDDSTLYFHRSSEKDGWISVYRATLPSHTSLS 295
Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV 366
T+SV I+RVTPPG+HAFTPATSPGN KFIAVATRRP S YRHIELFDL KN+F+ELTR V
Sbjct: 296 TDSVIIERVTPPGVHAFTPATSPGNKKFIAVATRRPNSDYRHIELFDLAKNEFVELTRLV 355
Query: 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSF 426
SP+THH NPFISPD++RVGYH+CRG S + + Q +LENIKSP+ +ISLFR DGSFPS+
Sbjct: 356 SPQTHHYNPFISPDAARVGYHRCRGASNDKKSSTQFMLENIKSPVAEISLFRIDGSFPSW 415
Query: 427 SPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSE 486
SP GDRIAFVEFPGVYVVN DG++RRQVY NAF T WDPVR VVY+S GPEFASES+E
Sbjct: 416 SPGGDRIAFVEFPGVYVVNRDGTDRRQVYPGNAFGTTWDPVRPGVVYSSAGPEFASESTE 475
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
VDIISINVD V + ++LTTNGKNNAFP+VSPDGKWIVFRS R+GYKNLYIMDA GE
Sbjct: 476 VDIISINVDQ---VGSFKKLTTNGKNNAFPAVSPDGKWIVFRSGRSGYKNLYIMDAVEGE 532
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
GL+RLTEGPW DTMC+WS DGEWIAFASDR+NPGS SFE++LIHPNGTGL++L++SG
Sbjct: 533 KGGLYRLTEGPWGDTMCSWSIDGEWIAFASDRENPGSASFELFLIHPNGTGLKRLVKSGL 592
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
GR NHPYFSPDGKSIVFT+DYGGISAEPIS PH +QPYGEI+ +KLDGSDLKRLT NSF
Sbjct: 593 GGRTNHPYFSPDGKSIVFTTDYGGISAEPISNPHHFQPYGEIYTVKLDGSDLKRLTHNSF 652
Query: 667 EDGTPAWGPRFIRPVDVEEVK-NEQCAFEDCHWLNETPNQRDWGAALEPEKVQC 719
EDGTPAWGP +I PVD+E K QC+F+DCHWL+E P LE QC
Sbjct: 653 EDGTPAWGPAYIEPVDLEWPKYGPQCSFDDCHWLSEIPKHSVGFKLLESRNPQC 706
>gi|297845142|ref|XP_002890452.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp.
lyrata]
gi|297336294|gb|EFH66711.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp.
lyrata]
Length = 706
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/719 (66%), Positives = 561/719 (78%), Gaps = 25/719 (3%)
Query: 6 IFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITD 65
F SLL L A + ++ +IIFTTLGRS Y FDI+TL + P+ +NE++ITD
Sbjct: 8 FFASLLLPLHATTLEHQNSNAGDGDTIIFTTLGRSRYEFDIFTLSTTHPPSDSNELRITD 67
Query: 66 GESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDA 125
GESVNFNG+FPSP+ P L LL ++TLIQ D PL LIYVTERNGTS+IYYD
Sbjct: 68 GESVNFNGYFPSPT-PALISLLPDETLIQM------EDSSPLHLIYVTERNGTSSIYYDL 120
Query: 126 VYY-DTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGG--VISMKDKPILSGEYLIYV 182
+Y D+ + R+ LE +RVQVPLL + G V S KDKP LSGE+L+YV
Sbjct: 121 IYGGDSDSKMKRRSVLE-----APSRVQVPLLSGFDHQSGMTVNSFKDKPSLSGEFLVYV 175
Query: 183 STHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDG 242
STHEN G PRTSW AVYSTELKTGLTRRLTP GVADFSPAVSPSG TAVASYG +GW G
Sbjct: 176 STHENSGEPRTSWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTG 235
Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT 302
EVE LSTDIY+F TRDGT RVK+VE+GGWPCWVDE+TL+FHR+SEED WISVY+ ILP+
Sbjct: 236 EVEELSTDIYVFSTRDGTHRVKVVEHGGWPCWVDETTLYFHRRSEEDGWISVYRAILPEN 295
Query: 303 GLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL 362
G ++TESV+IQRVTPPG+HAFTPATSP N++FIAVATRRP S YRH+ELFDL +N+FIEL
Sbjct: 296 GPLTTESVTIQRVTPPGVHAFTPATSPNNHEFIAVATRRPGSDYRHVELFDLKRNEFIEL 355
Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422
TR V+PK++HLNPF+SPDSSRVGYH CRG + + L LENI++ D+SLFR DGS
Sbjct: 356 TRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRR-SPLLFLENIQTTTTDLSLFRIDGS 414
Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FPSFSP GDRIA+V+ PGV+VV DGS +R+VY AFST WDPVR VVY+S GP FA+
Sbjct: 415 FPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYNGMAFSTAWDPVRPGVVYSSSGPTFAT 474
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
E +EVD+ISI VD D S+VRRLTTNGKNNAFP SPDGK IVFRS RTG+KNLYIMDA
Sbjct: 475 ERTEVDVISIEVDAADKSSSVRRLTTNGKNNAFPWPSPDGKRIVFRSGRTGHKNLYIMDA 534
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
E GE GL RLTEG W+DTMCNWSPDGEWIAFASDR++PGSGSFE++LIHPNGTGLRKLI
Sbjct: 535 EKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRESPGSGSFELFLIHPNGTGLRKLI 594
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
QSG+ GR NHP FSPD KS+VFTSDY GISAEPIS PH YQPYG+IF +KLDGS+L+RLT
Sbjct: 595 QSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNLRRLT 654
Query: 663 QNSFEDGTPAWGPRFIRPVDV--EEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQC 719
NS+EDGTPAW PRFI P +V + N +C+FEDCHWLN+ P L+ K+ C
Sbjct: 655 HNSYEDGTPAWAPRFIHPNNVVLQRRNNSRCSFEDCHWLNKYP-------TLKGRKISC 706
>gi|18395019|ref|NP_564147.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana]
gi|5263319|gb|AAD41421.1|AC007727_10 ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and
gb|N65244 come from this gene [Arabidopsis thaliana]
gi|15028243|gb|AAK76710.1| unknown protein [Arabidopsis thaliana]
gi|23297034|gb|AAN13226.1| unknown protein [Arabidopsis thaliana]
gi|332192017|gb|AEE30138.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana]
Length = 706
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/723 (65%), Positives = 563/723 (77%), Gaps = 33/723 (4%)
Query: 6 IFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITD 65
F SLL L + ++ +IIFTTLGRS Y FDI+ L + P+ + E++ITD
Sbjct: 8 FFASLLLRLHLSTAEHQNSNAGDGDTIIFTTLGRSHYEFDIFALSTTQPPSVSGELRITD 67
Query: 66 GESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDA 125
GESVNFNG+FPSPS LS LL ++TLIQ D PL LIYVTERNGTS++YYD
Sbjct: 68 GESVNFNGYFPSPSPALLS-LLPDETLIQM------EDSSPLHLIYVTERNGTSSLYYDL 120
Query: 126 VYY-DTRRNTRSRTALEQHGAEVSTRVQVPLLD-LNEVNGGVI-SMKDKPILSGEYLIYV 182
VY ++ T+ R+ LE +RVQVPLL + ++G + S KDKP LSGE+++YV
Sbjct: 121 VYGGNSDFKTKRRSVLE-----APSRVQVPLLSRFDHLSGMTVNSFKDKPSLSGEFIVYV 175
Query: 183 STHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDG 242
STHE+ G PR SW AVYSTELKTGLTRRLTP GVADFSPAVSPSG TAVASYG +GW G
Sbjct: 176 STHESSGEPRASWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTG 235
Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT 302
EVE L TDIY+FLTRDG+ RVK+VE+GGWPCWVDESTL+FHR+SEED WISVY+ ILP+
Sbjct: 236 EVEELRTDIYVFLTRDGSHRVKVVEHGGWPCWVDESTLYFHRRSEEDGWISVYRAILPEN 295
Query: 303 GLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL 362
G ++TESV+IQRVTPPG+HAFTPATSP N++F+AVATRRP S YRH+ELFDL +N+FIEL
Sbjct: 296 GPLTTESVTIQRVTPPGVHAFTPATSPNNHEFVAVATRRPGSDYRHVELFDLKRNEFIEL 355
Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ----LLLENIKSPLPDISLFR 418
TR V+PK+HHLNPF+SPDSSRVGYH CRG D N + L LENI++ D+SLFR
Sbjct: 356 TRLVAPKSHHLNPFLSPDSSRVGYHSCRG-----DANGRRSPLLFLENIQTTTRDLSLFR 410
Query: 419 FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
DGSFPSFSP GDRIA+V+ PGV+VV DGS +R+VY AFST WDPVR +VY+S GP
Sbjct: 411 IDGSFPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYKGMAFSTAWDPVRPGIVYSSSGP 470
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
FA+E +EVD+ISI+VD D S+VRRLTTNGKNNAFP SPDGK IVFRS RTG+KNLY
Sbjct: 471 TFATERTEVDVISIDVDAADKSSSVRRLTTNGKNNAFPWPSPDGKRIVFRSGRTGHKNLY 530
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
IMDAE GE GL RLTEG W+DTMCNWSPDGEWIAFASDR++PGSGSFE++LIHPNGTGL
Sbjct: 531 IMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRESPGSGSFELFLIHPNGTGL 590
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
RKLIQSG+ GR NHP FSPD KS+VFTSDY GISAEPIS PH YQPYG+IF +KLDGS++
Sbjct: 591 RKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNV 650
Query: 659 KRLTQNSFEDGTPAWGPRFIRP--VDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
+RLT NS+EDGTPAW PRFI P V+++ + +C+FEDCHWLN+ P L+ K
Sbjct: 651 RRLTHNSYEDGTPAWAPRFIHPNNVELQRRNDSRCSFEDCHWLNKYP-------TLKGRK 703
Query: 717 VQC 719
+ C
Sbjct: 704 ISC 706
>gi|225459635|ref|XP_002285877.1| PREDICTED: uncharacterized protein LOC100267814 isoform 2 [Vitis
vinifera]
Length = 680
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/694 (68%), Positives = 551/694 (79%), Gaps = 22/694 (3%)
Query: 30 SSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRN 89
+SIIFTTLGRSDYAFD+++LP T A+E++ITDG+SVNFNGHFPS SP +S LL N
Sbjct: 5 TSIIFTTLGRSDYAFDVFSLPTLGPSTIADELRITDGQSVNFNGHFPS--SPIIS-LLAN 61
Query: 90 QTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVST 149
QTL++S + R LQ IYVTERNG+SNIY D +YYDT N+R R+ALE +
Sbjct: 62 QTLVESSSVK--RPDESLQTIYVTERNGSSNIYLDIIYYDTPTNSRRRSALE-----TAV 114
Query: 150 RVQVPLLDLN-EVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
RV+VPLL N E + G ISMKD+P L GE L+YVSTHE+ G PR SWAAVYST L TG T
Sbjct: 115 RVEVPLLGTNTEQSDGRISMKDRPSLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGST 174
Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
RRLTPYGVAD+SPAVSPSG +TAVASYG +GW GEVE LSTDIY+F TRDG++R K+VE+
Sbjct: 175 RRLTPYGVADYSPAVSPSGVWTAVASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEH 234
Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
GGWPCWVD+STLFFHR+ D W S+Y+ IL TESV I+RVTPPGLHAFTPATS
Sbjct: 235 GGWPCWVDDSTLFFHRRGS-DGWWSIYRAIL-------TESVVIERVTPPGLHAFTPATS 286
Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
PGN FIAVATRR S YRHIELFDL+ N+F ELTR +SP+THH NPFISPDS+R+GYH+
Sbjct: 287 PGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHR 346
Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
CRG S + LLLEN+KSPLP+ISLFRFDGSFPSFSP GDRIA+VEFPGVYVVN DG
Sbjct: 347 CRGDSNGGK-SPHLLLENLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEFPGVYVVNRDG 405
Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
S RR+V+ AFST WD R+ VVYTS GP FA+ES++VDI+SINVDDVD S ++LTT
Sbjct: 406 SGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPS-YKKLTT 464
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
G+NNAFPS SPDGKWI FRS R+GYKNLYIMDA GE G+HRLTEGPW+DTMCNWSPD
Sbjct: 465 GGENNAFPSPSPDGKWIAFRSGRSGYKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPD 524
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+WI FASDR+NPG G FE+Y+IHPNGTGLRK++ SGSAGR NHP+FSPDGKSIVFTSDY
Sbjct: 525 GDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDY 584
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVE-EVK 687
+SAEPIS H YQPYG+IF + LDGS L RLT NS+EDGTPAW P+ IRPVDV+ +V
Sbjct: 585 AAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPVDVKLQVD 644
Query: 688 NEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV 721
C+FEDCHWL+ TPN A K QCG+
Sbjct: 645 GPHCSFEDCHWLSNTPNHGVEAAPWVLAKPQCGL 678
>gi|147797552|emb|CAN73514.1| hypothetical protein VITISV_037210 [Vitis vinifera]
Length = 715
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/725 (66%), Positives = 565/725 (77%), Gaps = 24/725 (3%)
Query: 1 MKLQTIFCSLLYLLSAVFRATADEDS--SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA 58
M T+ L L+ +F A AD D +S +SIIFTTLGRSDYAFD+++LP T A
Sbjct: 9 MNRITLLXFFLSLVITLFSAAADHDGPTTSTTSIIFTTLGRSDYAFDVFSLPTLGPSTIA 68
Query: 59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGT 118
+E++ITDG+SVNFNGHFPS SP +S LL NQTL++S + R LQ IYVTERNG+
Sbjct: 69 DELRITDGQSVNFNGHFPS--SPIIS-LLANQTLLESSSVK--RPDESLQTIYVTERNGS 123
Query: 119 SNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLN-EVNGGVISMKDKPILSGE 177
SNIY D +YYDT N+R R+ALE + RV+VPLL N E + G ISMKD+P L GE
Sbjct: 124 SNIYLDIIYYDTPTNSRRRSALE-----TAVRVEVPLLGTNTEQSDGRISMKDRPSLVGE 178
Query: 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGN 237
L+YVSTHE+ G PR SWAAVYST L TG TRRLTPYGVAD+SPAVSPSG +TAVASYG
Sbjct: 179 XLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGE 238
Query: 238 KGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKV 297
+GW GEVE LSTDIY+F TRDG++R K+VE+GGWPCWVD+STLFFHR+ D W S+Y+
Sbjct: 239 RGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFHRRGS-DGWWSIYRA 297
Query: 298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357
IL TESV I+RVTPPGLHAFTPATSPGN FIAVATRR S YRHIELFDL+ N
Sbjct: 298 IL-------TESVVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSN 350
Query: 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF 417
+F ELTR +SP+THH NPFISPDS+R+GYH+CRG S + LLLEN+KSPLP+ISLF
Sbjct: 351 EFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK-SPHLLLENLKSPLPEISLF 409
Query: 418 RFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
RFDGSFPSFSP GDRIA+VEFPGVYVVN DGS RR+V+ AFST WD R+ VVYTS G
Sbjct: 410 RFDGSFPSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAG 469
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P FA+ES++VDI+SINVDDVD S ++LTT G+NNAFPS SPDGKWI FRS R+GYKNL
Sbjct: 470 PTFATESTKVDIVSINVDDVDQPS-YKKLTTGGENNAFPSPSPDGKWIAFRSGRSGYKNL 528
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIMDA GE G+HRLTEGPW+DTMCNWSPDG+WI FASDR+NPG G FE+Y+IHPNGTG
Sbjct: 529 YIMDAVXGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTG 588
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
LRK++ SGSAGR NHP+FSPDGKSIVFTSDY +SAEPIS H YQPYG+IF + LDGS
Sbjct: 589 LRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSG 648
Query: 658 LKRLTQNSFEDGTPAWGPRFIRPVDVE-EVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
L RLT NS+EDGTPAW P+ IRPVDV+ +V C+FEDCHWL+ TPN A K
Sbjct: 649 LHRLTHNSYEDGTPAWAPKVIRPVDVKLQVDGPHCSFEDCHWLSNTPNHGVEAAPWVLAK 708
Query: 717 VQCGV 721
QCG+
Sbjct: 709 PQCGL 713
>gi|359492398|ref|XP_002285876.2| PREDICTED: uncharacterized protein LOC100267814 isoform 1 [Vitis
vinifera]
Length = 715
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/725 (66%), Positives = 565/725 (77%), Gaps = 24/725 (3%)
Query: 1 MKLQTIFCSLLYLLSAVFRATADEDS--SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA 58
M T+ L L+ +F A AD D +S +SIIFTTLGRSDYAFD+++LP T A
Sbjct: 9 MNRITLLFFFLSLVITLFSAAADHDGPTTSTTSIIFTTLGRSDYAFDVFSLPTLGPSTIA 68
Query: 59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGT 118
+E++ITDG+SVNFNGHFPS SP +S LL NQTL++S + R LQ IYVTERNG+
Sbjct: 69 DELRITDGQSVNFNGHFPS--SPIIS-LLANQTLVESSSVK--RPDESLQTIYVTERNGS 123
Query: 119 SNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLN-EVNGGVISMKDKPILSGE 177
SNIY D +YYDT N+R R+ALE + RV+VPLL N E + G ISMKD+P L GE
Sbjct: 124 SNIYLDIIYYDTPTNSRRRSALE-----TAVRVEVPLLGTNTEQSDGRISMKDRPSLVGE 178
Query: 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGN 237
L+YVSTHE+ G PR SWAAVYST L TG TRRLTPYGVAD+SPAVSPSG +TAVASYG
Sbjct: 179 DLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGE 238
Query: 238 KGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKV 297
+GW GEVE LSTDIY+F TRDG++R K+VE+GGWPCWVD+STLFFHR+ D W S+Y+
Sbjct: 239 RGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFHRRGS-DGWWSIYRA 297
Query: 298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357
IL TESV I+RVTPPGLHAFTPATSPGN FIAVATRR S YRHIELFDL+ N
Sbjct: 298 IL-------TESVVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSN 350
Query: 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF 417
+F ELTR +SP+THH NPFISPDS+R+GYH+CRG S + LLLEN+KSPLP+ISLF
Sbjct: 351 EFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK-SPHLLLENLKSPLPEISLF 409
Query: 418 RFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
RFDGSFPSFSP GDRIA+VEFPGVYVVN DGS RR+V+ AFST WD R+ VVYTS G
Sbjct: 410 RFDGSFPSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAG 469
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P FA+ES++VDI+SINVDDVD S ++LTT G+NNAFPS SPDGKWI FRS R+GYKNL
Sbjct: 470 PTFATESTKVDIVSINVDDVDQPS-YKKLTTGGENNAFPSPSPDGKWIAFRSGRSGYKNL 528
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIMDA GE G+HRLTEGPW+DTMCNWSPDG+WI FASDR+NPG G FE+Y+IHPNGTG
Sbjct: 529 YIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTG 588
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
LRK++ SGSAGR NHP+FSPDGKSIVFTSDY +SAEPIS H YQPYG+IF + LDGS
Sbjct: 589 LRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSG 648
Query: 658 LKRLTQNSFEDGTPAWGPRFIRPVDVE-EVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
L RLT NS+EDGTPAW P+ IRPVDV+ +V C+FEDCHWL+ TPN A K
Sbjct: 649 LHRLTHNSYEDGTPAWAPKVIRPVDVKLQVDGPHCSFEDCHWLSNTPNHGVEAAPWVLAK 708
Query: 717 VQCGV 721
QCG+
Sbjct: 709 PQCGL 713
>gi|357520365|ref|XP_003630471.1| Protein tolB [Medicago truncatula]
gi|355524493|gb|AET04947.1| Protein tolB [Medicago truncatula]
Length = 684
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/688 (66%), Positives = 529/688 (76%), Gaps = 45/688 (6%)
Query: 22 ADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSP 81
+ED+SS SIIFTTLGR DYAFDIY+LPI E+++TDG SVNFNG F
Sbjct: 24 VEEDASSSDSIIFTTLGRPDYAFDIYSLPIHHH-YHHQELQLTDGHSVNFNGQF------ 76
Query: 82 FLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE 141
L N T I+ QD PPPLQL+YVTER G IYYDAVY T +
Sbjct: 77 -----LPNLTSIKLLTHQD---PPPLQLVYVTERTGFPTIYYDAVYTTTTK--------- 119
Query: 142 QHGAEVSTRVQVPLL--DLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAA 197
++ R+Q+PLL L + +S+KDKP LS G+YLIYVSTHE+PG R SW A
Sbjct: 120 -----INDRIQLPLLPNHLTQTQSQ-LSIKDKPSLSSDGQYLIYVSTHEDPGVQRVSWTA 173
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
VYST LK+G TRRLTPYGVADFSPAVSP+GK+TAVASYG GW GEVE L+TDIY+FLT
Sbjct: 174 VYSTHLKSGNTRRLTPYGVADFSPAVSPTGKWTAVASYGGNGWSGEVEDLTTDIYVFLTH 233
Query: 258 DGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317
DGT R K+V++GGWP WVD+ T++FHR+ D W+S+Y+ IL S+ SV I+RVTP
Sbjct: 234 DGTHRYKVVDHGGWPSWVDDRTIYFHRRGN-DGWLSIYRAILTTD---SSYSVLIERVTP 289
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PGLH FTPATSPGNNKFIAVATRRP S++RHIELFDLV N+F ELTRFVSP THHLNPFI
Sbjct: 290 PGLHVFTPATSPGNNKFIAVATRRPGSNFRHIELFDLVNNEFKELTRFVSPNTHHLNPFI 349
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
SPDS+RVGYHKCRG + + + Q +LEN++SP+P+++LFRF GSFP FSP GDRIA+VE
Sbjct: 350 SPDSARVGYHKCRGKES--NTSPQFMLENVRSPVPNLTLFRFTGSFPVFSPSGDRIAYVE 407
Query: 438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
PGVYVVN DGSNR++V AFST WD VR V+YT+ G FASES+EVDIISI+VD
Sbjct: 408 MPGVYVVNRDGSNRKKVSDAMAFSTAWDRVRPGVIYTAVGETFASESTEVDIISIDVDR- 466
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
+ V++LT +GKNNAFPS SPDGKWIVFRS R+G+KNLYIMDA GE GL RLTEGP
Sbjct: 467 ---NFVKKLTLDGKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAVHGEKNGLKRLTEGP 523
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
WSDTMCNWSPDGEWIAFASDR +PGSGSFE+YLIHP+GTGLRKLI SGS GR NHPYFSP
Sbjct: 524 WSDTMCNWSPDGEWIAFASDRHDPGSGSFEIYLIHPDGTGLRKLIHSGSGGRTNHPYFSP 583
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
DGKS+VFTSDY GISAEPIS PH YQPYGEIF ++LDGS L RLT NS+EDGTPAW P++
Sbjct: 584 DGKSMVFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGLTRLTHNSYEDGTPAWSPKY 643
Query: 678 IRPVDVEEVK-NEQCAFEDCHWLNETPN 704
I+PV+VE K C+FEDCHWLN PN
Sbjct: 644 IKPVNVEMPKGGPYCSFEDCHWLNNMPN 671
>gi|356518561|ref|XP_003527947.1| PREDICTED: uncharacterized protein LOC100791865 [Glycine max]
Length = 723
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/710 (62%), Positives = 529/710 (74%), Gaps = 50/710 (7%)
Query: 20 ATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN------EIKITDGESVNFNG 73
A+EDS+S +SIIFTTLGR+ YAFDIY+LP+ + E+ +TDG SVNFNG
Sbjct: 55 CAAEEDSTSTASIIFTTLGRASYAFDIYSLPVPVQQQQQQPLSPSQELLLTDGHSVNFNG 114
Query: 74 HFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRN 133
HF L N + IQ P + PPLQL+YVTERNG I+YDA+Y +
Sbjct: 115 HF-----------LSNSSAIQLP-----KHSPPLQLVYVTERNGYPTIFYDAIYSSSM-- 156
Query: 134 TRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTP 191
VS R+Q+PLL N ++ S+KDKP ++ G+YL+YVS+HENPG P
Sbjct: 157 -------------VSNRIQIPLLS-NHLSDA--SIKDKPSVTPDGQYLLYVSSHENPGVP 200
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
R SW AVYST+L++GLT+RLTPYGVADFSP++SPSG +TAVASYG GW GEVE L+TDI
Sbjct: 201 RASWTAVYSTQLESGLTQRLTPYGVADFSPSLSPSGLWTAVASYGPHGWAGEVEDLTTDI 260
Query: 252 YIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
Y+FLT DGT R KIVE+GGWP WVD+ TL+FHR+ + D W S+Y+ ILP S +SV
Sbjct: 261 YVFLTHDGTHRFKIVEHGGWPTWVDDRTLYFHRRGQ-DHWWSIYRAILPSNAPFSVDSVF 319
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
++RVTPPGLHAFTPATSPGNN FIAVATRRP S++RHIELFDL N+F ELTR VSP +H
Sbjct: 320 VERVTPPGLHAFTPATSPGNNNFIAVATRRPGSNFRHIELFDLASNEFTELTRLVSPNSH 379
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
HLNPFISPDS+RVGYHKCRG Q LEN++SP+P ++LFRF GSFP FSP GD
Sbjct: 380 HLNPFISPDSTRVGYHKCRG-EPNAHSTPQFFLENVRSPVPGLTLFRFVGSFPVFSPSGD 438
Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
RIA+VE PGVYVVN DGSN R+V AFST WD VR V+YT+ G FA ESS+VDI+S
Sbjct: 439 RIAYVEMPGVYVVNRDGSNLRKVSNAMAFSTAWDRVRPGVIYTAIGETFAPESSQVDIVS 498
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I DVD ++V+RLT +GKNNAFPS SPDGKWIVFRS R+G+KNLYIMDA GE L
Sbjct: 499 I---DVDHENSVKRLTLDGKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAVDGEKKELR 555
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
RLTEGPW+DTMCNWSPDGEWIAFASDR +PGSGSFE+YLIHPNGTGLRKLIQSGS GR N
Sbjct: 556 RLTEGPWTDTMCNWSPDGEWIAFASDRHDPGSGSFEIYLIHPNGTGLRKLIQSGSGGRTN 615
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
HPYFSPDGKS+ FTSDY GISAEPIS PH YQPYGEIF ++LDGS +KRLT NS+EDGTP
Sbjct: 616 HPYFSPDGKSLTFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGIKRLTHNSYEDGTP 675
Query: 672 AWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV 721
AW P+++ PV+V + C+F+DCHWLN P +G + K QC
Sbjct: 676 AWSPKYMPPVNVPK-GGPYCSFDDCHWLNNMPISTAFG--VSKAKPQCAA 722
>gi|449499097|ref|XP_004160721.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 703
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/674 (62%), Positives = 521/674 (77%), Gaps = 20/674 (2%)
Query: 31 SIIFTTLGRSDYAFDIYTLPI--SDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
SI+FTTLGRS YAFDIYTLP + P+ +EI ITDG+ VNFNG+FPS +S L
Sbjct: 28 SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
Q P +L+YVTERNG S I+YDAV+ + R R+ LE +
Sbjct: 88 TN--------QSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSELE-----IP 134
Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
R+Q+PLLD + N +S KD+P LSG+YL+YVSTHE+P RTSWAAVYS LK+GLT
Sbjct: 135 HRLQIPLLDEEQKNEAKVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLT 194
Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
RRLTPYG+ADFSP+VSPSG +TAVASYG KGW G+VE LSTD+YIFLTRDG++RVK+VE+
Sbjct: 195 RRLTPYGIADFSPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEH 254
Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
GGWPCW D+STL+FHR+ + D W+S+Y+ ILP G +S +SV I+R+TPPGLH FTPATS
Sbjct: 255 GGWPCWADDSTLYFHRRGD-DQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATS 313
Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
N IAVATRRP SS+RHIELF++V +F ELT+ VSP +HH NPF+S D +R+GYHK
Sbjct: 314 SANKNLIAVATRRPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHK 373
Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
CRG R +N LL EN++SP+ ++SLFR SFPSFSP GDRIA+ FPG+YV+ DG
Sbjct: 374 CRGDGNRRK-SNLLLFENVRSPVSNLSLFRIAVSFPSFSPAGDRIAYANFPGLYVIERDG 432
Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
SN+R+V+ AFST WDPVR+ VVYTS GP+FA SS+VDIIS+NVD+ + +++LTT
Sbjct: 433 SNQREVFSGAAFSTAWDPVRKGVVYTSAGPDFAPVSSQVDIISVNVDEEE--RNIKKLTT 490
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
NG+NNAFPS SPDGKWIVFRS +TGYKNLYIMDA GE GL RLTEG W+DTMC+WSP+
Sbjct: 491 NGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTEGQWTDTMCSWSPE 550
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+WIAF+SDR+NPG G+F+++LIHPNGTGLRKL QSG GRANHP + PDGK++VFT+D
Sbjct: 551 GDWIAFSSDRENPGGGNFDLFLIHPNGTGLRKLFQSGLGGRANHPNWRPDGKALVFTTDN 610
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN 688
GIS EP+S PH YQPYGEI+ IKLDGSDL+RLT NS+EDGTP W PR+I PV+VE + +
Sbjct: 611 AGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSPRYINPVNVESLYD 670
Query: 689 -EQCAFEDCHWLNE 701
E C FEDCHWLN+
Sbjct: 671 VEPCGFEDCHWLNQ 684
>gi|449463434|ref|XP_004149439.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 703
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/674 (62%), Positives = 520/674 (77%), Gaps = 20/674 (2%)
Query: 31 SIIFTTLGRSDYAFDIYTLPI--SDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
SI+FTTLGRS YAFDIYTLP + P+ +EI ITDG+ VNFNG+FPS +S L
Sbjct: 28 SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
Q P +L+YVTERNG S I+YDAV+ + R R+ LE +
Sbjct: 88 TN--------QSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSELE-----IP 134
Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
R+Q+PLLD + N +S KD+P LSG+YL+YVSTHE+P RTSWAAVYS LK+GLT
Sbjct: 135 HRLQIPLLDEEQKNEARVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLT 194
Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
RRLTPYG+ADFSP+VSPSG +TAVASYG KGW G+VE LSTD+YIFLTRDG++RVK+VE+
Sbjct: 195 RRLTPYGIADFSPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEH 254
Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
GGWPCW D+STL+FHR+ + D W+S+Y+ ILP G +S +SV I+R+TPPGLH FTPATS
Sbjct: 255 GGWPCWADDSTLYFHRRGD-DQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATS 313
Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
N IAVATRRP SS+RHIELF++V +F ELT+ VSP +HH NPF+S D +R+GYHK
Sbjct: 314 SANKNLIAVATRRPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHK 373
Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
CRG R +N LL E ++SP+ ++SLFR SFPSFSP GDRIA+ FPG+YV+ DG
Sbjct: 374 CRGDGNRRK-SNLLLFETVRSPVSNLSLFRIAVSFPSFSPAGDRIAYANFPGLYVIERDG 432
Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
SN+R+V+ AFST WDPVR+ VVYTS GP+FA SS+VDIIS+NVD+ + +++LTT
Sbjct: 433 SNQREVFSGAAFSTAWDPVRKGVVYTSAGPDFAPVSSQVDIISVNVDEEE--RNIKKLTT 490
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
NG+NNAFPS SPDGKWIVFRS +TGYKNLYIMDA GE GL RLTEG W+DTMC+WSP+
Sbjct: 491 NGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTEGQWTDTMCSWSPE 550
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+WIAF+SDR+NPG GSF+++LIHPNGTGLRKL QSG GRANHP + PDGK++VFT+D
Sbjct: 551 GDWIAFSSDRENPGGGSFDLFLIHPNGTGLRKLFQSGLGGRANHPNWRPDGKALVFTTDN 610
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN 688
GIS EP+S PH YQPYGEI+ IKLDGSDL+RLT NS+EDGTP W PR+I PV+VE + +
Sbjct: 611 AGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSPRYINPVNVESLYD 670
Query: 689 -EQCAFEDCHWLNE 701
E C FEDCHWLN+
Sbjct: 671 VEPCGFEDCHWLNQ 684
>gi|297845140|ref|XP_002890451.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp.
lyrata]
gi|297336293|gb|EFH66710.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp.
lyrata]
Length = 703
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/684 (59%), Positives = 493/684 (72%), Gaps = 37/684 (5%)
Query: 27 SSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGHFPSPSSPFLSF 85
S+ S+I+FTT+GR + FDI+TLP S RP + A+E ++TD +SVNFNGHF SPS P L
Sbjct: 29 SNGSTILFTTIGRPTFEFDIFTLPTSHRPPSPADEHRLTDAKSVNFNGHFASPS-PALIS 87
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
LL N++ IQ PQD L LIYVTER+GT ++YYD V+ D
Sbjct: 88 LLPNKSQIQ---PQD------LHLIYVTERDGTPSLYYDVVHDD---------------- 122
Query: 146 EVSTRVQVPLLDLNEVNGG--VISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL 203
+ +RVQVPL E G V SMKD P+L+ +YL+YVSTHENPG P SWAAVYSTEL
Sbjct: 123 KSGSRVQVPLFSGEEQQSGMNVNSMKDTPVLTSDYLVYVSTHENPGKPMASWAAVYSTEL 182
Query: 204 KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEV--EMLSTDIYIFLTRDGTQ 261
+T TRRLTP G+ADFSPAVSPSGK+TAVASYG KGW + + +S+DIY+FLTRDGTQ
Sbjct: 183 QTKSTRRLTPPGIADFSPAVSPSGKWTAVASYGEKGWTWSLVEKEISSDIYVFLTRDGTQ 242
Query: 262 RVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLH 321
RVK+VE GGWP WVD+STL+FHRKS+ D WI VY+ I+P+TG V+T++V+IQRVTPPGLH
Sbjct: 243 RVKVVEQGGWPRWVDDSTLYFHRKSD-DGWICVYRAIIPKTGAVTTKTVTIQRVTPPGLH 301
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
AFTPATSP NN FIAVATRRP S RH+ELFDL KN+FIELTR VSPK+ H NPF+SPDS
Sbjct: 302 AFTPATSPNNNNFIAVATRRPGSEIRHVELFDLKKNEFIELTRLVSPKSQHFNPFLSPDS 361
Query: 382 SRVGYHKCRGGST-REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG 440
SRVGYH CRG +T R+ N LL+++K+ D+SLFRFDG+FPS SP+GDR AFV F G
Sbjct: 362 SRVGYHSCRGDATGRKTPRN--LLQSLKTTSNDLSLFRFDGAFPSISPEGDRFAFVSFTG 419
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V+VV DGS RQ+ + F TVWDP+R +VYTS GP A S++DI++INVD +
Sbjct: 420 VFVVKPDGSGLRQLLPQMGFGTVWDPIRHGIVYTSSGPALAPGKSQIDILAINVDAPNPS 479
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
+AV++LTT G+NNAFP SPDGK IVFRS+R+G KNLYIMDAE GE GL RLT G W+D
Sbjct: 480 TAVKKLTTTGENNAFPWPSPDGKRIVFRSSRSGTKNLYIMDAEKGESGGLFRLTNGNWND 539
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T+ WSPDG WI FAS+R+ PG+ +Y++HP+GTGLRKL Q+ + G + HP FSPD K
Sbjct: 540 TIATWSPDGNWIVFASNREFPGTLLMNIYVVHPDGTGLRKLAQNLTGGVSMHPMFSPDSK 599
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
IVFT+ Y GISAE I PH P EIF + LDGS + RLT NS EDG P W P+
Sbjct: 600 RIVFTTIYAGISAEQIGNPHFNVPSSEIFTVNLDGSGMTRLTHNSVEDGPPMWFPKIKAT 659
Query: 681 VDVEEVK--NEQCAFEDCHWLNET 702
DV K C+ +D N T
Sbjct: 660 GDVAWPKRFGPSCSIQDFKTQNTT 683
>gi|18395017|ref|NP_564146.1| uncharacterized protein [Arabidopsis thaliana]
gi|5263318|gb|AAD41420.1|AC007727_9 F8K7.9 [Arabidopsis thaliana]
gi|14334812|gb|AAK59584.1| unknown protein [Arabidopsis thaliana]
gi|24030458|gb|AAN41381.1| unknown protein [Arabidopsis thaliana]
gi|332192016|gb|AEE30137.1| uncharacterized protein [Arabidopsis thaliana]
Length = 703
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/684 (58%), Positives = 491/684 (71%), Gaps = 37/684 (5%)
Query: 27 SSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGHFPSPSSPFLSF 85
S+ S+I+FTT+GR + FDI+TLP S RP + A+E ++TDG+S+NFNG+F SPS+ +S
Sbjct: 29 SNGSTILFTTIGRPTFEFDIFTLPTSHRPPSPADEHRLTDGKSINFNGYFASPSTALIS- 87
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
LL +T IQ PQD + LIYVTER GT ++ YD V+ D
Sbjct: 88 LLPKRTQIQ---PQD------VHLIYVTERAGTPSLNYDVVHSD---------------- 122
Query: 146 EVSTRVQVPLLDLNEVNGG--VISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL 203
V +R+QVPL E G V SMKD P+L+ YL++VSTHENPG P SWAAVYSTEL
Sbjct: 123 NVGSRIQVPLFSGEEQQSGMNVNSMKDTPVLTNGYLVHVSTHENPGKPMASWAAVYSTEL 182
Query: 204 KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEV--EMLSTDIYIFLTRDGTQ 261
+T TRRLTP G+ADFSPAVSPSGK+TAVAS+G KGW + + +S+D+Y+FLT+DGTQ
Sbjct: 183 RTKSTRRLTPLGIADFSPAVSPSGKWTAVASFGEKGWTWSMVEKEISSDVYVFLTQDGTQ 242
Query: 262 RVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLH 321
RVK+VE GGWP WVD+STL+FHRKS+ D WISVY+ ILP+TG V+T+SV+IQRVTPPGLH
Sbjct: 243 RVKVVEQGGWPRWVDDSTLYFHRKSD-DGWISVYRAILPKTGPVTTKSVTIQRVTPPGLH 301
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
AFTPATSP NN FIAVATRRP S RH+ELFDL KN+F+ELTR VSPK+HH NPF+SPDS
Sbjct: 302 AFTPATSPNNNNFIAVATRRPGSEIRHVELFDLKKNEFVELTRLVSPKSHHFNPFLSPDS 361
Query: 382 SRVGYHKCRGGST-REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG 440
SRVGYH CRG +T R+ N LL+++K+ D+SLFRFDG+FPS SP+GDR AFV F G
Sbjct: 362 SRVGYHSCRGDATGRKTPRN--LLQSLKTTSNDLSLFRFDGAFPSISPEGDRFAFVSFTG 419
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V+VVN DGS RQ+ + F TVWDP+R +VYTS GP A S++DI++INVD
Sbjct: 420 VFVVNPDGSGLRQLLPQMGFGTVWDPIRHGIVYTSSGPALAPGKSQIDILAINVDAPSPA 479
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
+AV++LTT G+NNAFP SPDGK IVFRS R+G KNLYIMDAE GE GL RLT G W+D
Sbjct: 480 TAVKKLTTTGENNAFPWPSPDGKRIVFRSARSGTKNLYIMDAEKGESGGLFRLTNGNWND 539
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T+ WSPDG WI FAS+R+ PG+ +Y++HP+GTGLRKL Q+ + + HP FSPD K
Sbjct: 540 TIATWSPDGNWIVFASNREFPGTLLMNIYVVHPDGTGLRKLAQNLTGLVSMHPMFSPDSK 599
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
IVFT+ Y GISAE I PH P EIF + LDGS L RLT NS EDG P W P+
Sbjct: 600 RIVFTTIYAGISAEQIGNPHFNVPSSEIFTVNLDGSGLTRLTHNSVEDGPPMWFPKIKAT 659
Query: 681 VDVEEVK--NEQCAFEDCHWLNET 702
DV K C+ +D N T
Sbjct: 660 GDVAWPKRFGPSCSIQDFKTQNTT 683
>gi|357121960|ref|XP_003562684.1| PREDICTED: protein tolB-like [Brachypodium distachyon]
Length = 709
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/692 (56%), Positives = 486/692 (70%), Gaps = 65/692 (9%)
Query: 31 SIIFTTLGRSDYAFDIYTLPI----------SDRPTTANEIKITDGESVNFNGHFP-SPS 79
+I+FTTLGRS YAFDI+ +P+ SD+ + A E+++TDG SVN+NG+F SPS
Sbjct: 41 TIVFTTLGRSRYAFDIFAVPLNRGDHLALSPSDK-SAAAEVRLTDGASVNYNGNFAASPS 99
Query: 80 SPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA 139
S L++V+ERNG+ N+Y + T R A
Sbjct: 100 SD--------------------------ALLFVSERNGSLNLYLSPI---PSSPTSRREA 130
Query: 140 LEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAA 197
LE+ + S ++ PLL + V ++KD+P L+ G L+YVST G+PR SWAA
Sbjct: 131 LEEKEEDSSAQIS-PLLPWDPV-----ALKDRPSLTPDGTRLVYVSTAVPAGSPRRSWAA 184
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
VYSTEL +G TRRLTP GVADFSPAVSPSG++TAVAS G GW GEVE L TDIY+F T
Sbjct: 185 VYSTELHSGRTRRLTPEGVADFSPAVSPSGEWTAVASPGEAGWAGEVEDLRTDIYVFRTS 244
Query: 258 DGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317
DG++R +V +GGWPCW DE TLFFHR+ + D W VY+ + GL + V ++R+TP
Sbjct: 245 DGSRRTLVVPDGGWPCWADEVTLFFHRR-DSDGWYGVYRAEI--HGLSAAAGV-VERITP 300
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN----KFIELTRFVSPKTHHL 373
PG HAFTPA SPG +AVATRRP S YRH+E+ DL + E+TR ++P HH
Sbjct: 301 PGFHAFTPAASPGAPGIVAVATRRPGSKYRHVEVIDLSSGGENAAYFEVTRSMAPHVHHF 360
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDR 432
NPFISPD +R+GYH+CRG +G++ LLLE++KSP PD +SLFR DGS+PSFS G R
Sbjct: 361 NPFISPDGARLGYHRCRGSG---NGDSPLLLESLKSPGPDTVSLFRIDGSYPSFSHDGKR 417
Query: 433 IAFVEFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
IAFV PG+YVVNSDGS+ RR+++ NAF T WD RE V+YTS GP+FASES+EVD+++
Sbjct: 418 IAFVGLPGLYVVNSDGSSVRRKIFSGNAFPTSWDWKREGVIYTSIGPDFASESTEVDVVA 477
Query: 492 INVDDVDGVS-AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+++ D + ++++LT GKNNAFPS SPDGKW+VFRS R+G+KNLYIMDAE GE G+
Sbjct: 478 VSLGDGESSQVSIKKLTLGGKNNAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEAGGI 537
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
HRLT GPWSDTMCNWSPDGEWIAFASDR NPG GSF +YLIHPNGTGLR+L+ S GR
Sbjct: 538 HRLTNGPWSDTMCNWSPDGEWIAFASDRHNPGGGSFAIYLIHPNGTGLRRLVHSADGGRT 597
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
NHP+FSPD KSIVFTSD +SAEPIS PH YQPYGEIF I +DGS L+RLT NSFEDGT
Sbjct: 598 NHPWFSPDSKSIVFTSDLAAVSAEPISNPHHYQPYGEIFTINIDGSGLQRLTHNSFEDGT 657
Query: 671 PAWGPRFIRPVDVEEV--KNEQCAFEDCHWLN 700
P+W P F+ P DV E + CAF DCHWL+
Sbjct: 658 PSWTPYFLEPRDVGETLQASGTCAFNDCHWLD 689
>gi|115456491|ref|NP_001051846.1| Os03g0840200 [Oryza sativa Japonica Group]
gi|50428662|gb|AAT77013.1| putative F8K7.10 protein [Oryza sativa Japonica Group]
gi|108712007|gb|ABF99802.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113550317|dbj|BAF13760.1| Os03g0840200 [Oryza sativa Japonica Group]
gi|215695413|dbj|BAG90604.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215713452|dbj|BAG94589.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 688
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/687 (56%), Positives = 483/687 (70%), Gaps = 60/687 (8%)
Query: 31 SIIFTTLGRSDYAFDIYTLPIS---DRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
+I+FTTLGRS Y FDI++LP++ P A E+++TDG SVN+NG+F
Sbjct: 29 TIVFTTLGRSRYEFDIFSLPLAPSPHNPAAAAELRLTDGVSVNYNGNFA----------- 77
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
P +++V+ERNG+ N+Y V + R ALE +
Sbjct: 78 ----------------PASDSILFVSERNGSLNLYLSPV------PSSRREALESASSSS 115
Query: 148 STRVQV--PLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTEL 203
S+ PLL I++KD+P L+ G L+YVST PR+SWAAVYSTEL
Sbjct: 116 SSAAATISPLLPWEP-----IALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTEL 170
Query: 204 KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
TG TRRLTP GVADFSPAVSPSG++TA AS G GW GEVE L TDIY+F T DG++R
Sbjct: 171 STGRTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRS 230
Query: 264 KIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323
+ +GGWP W DE+T+FFHR+ + D W VY+ + TG E+ S++R+TPPG HAF
Sbjct: 231 LAIRDGGWPSWADETTVFFHRR-DSDGWYGVYRAEISVTG-DGVEAASVERITPPGFHAF 288
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLV---KNKFIELTRFVSPKTHHLNPFISPD 380
TPA SPG +AVATRR S YRHIE+ D+ KN + E+TR V+P+ HH NPFISPD
Sbjct: 289 TPAASPGAPGLVAVATRRAGSDYRHIEVIDVSSDGKNAYFEVTRPVAPRVHHFNPFISPD 348
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPD-ISLFRFDGSFPSFSPKGDRIAFVEF 438
+RVGYH+CRG R +G++ LLLENIKSP PD SLFR DGSFPSFS G +IAFV
Sbjct: 349 GARVGYHRCRG---RGNGDSPLLLENIKSPGSPDTFSLFRIDGSFPSFSHDGKKIAFVGL 405
Query: 439 PGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
PG+YVVNSDGS RR+++ NAFST WD R+ VVYTS GP+FASE++EVD+++I++ D
Sbjct: 406 PGMYVVNSDGSGGRRKIFSGNAFSTSWDWKRKGVVYTSIGPDFASETTEVDVVAISLGDD 465
Query: 498 DGVSAV--RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D S + ++LT G+NNAFPS SPDGKW+VFRS R+G KNLYI+DAE GE G+ RLTE
Sbjct: 466 DDESTISMKKLTVGGENNAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTE 525
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
GPWSDTMCNWSPDGEWIAFASDR PGSGSF +Y++HPNGTGLR+++ SG +GR NHP+F
Sbjct: 526 GPWSDTMCNWSPDGEWIAFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWF 585
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPD KS+VFTSDY +SAEP+S PH YQPYGEIF + +DGS+++RLT NSFEDGTP+W P
Sbjct: 586 SPDSKSLVFTSDYAAVSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGTPSWTP 645
Query: 676 RFIRPVDVEEV--KNEQCAFEDCHWLN 700
F+ P DV E + +CAF+DCHWLN
Sbjct: 646 YFLEPRDVGETLQASGRCAFQDCHWLN 672
>gi|125588578|gb|EAZ29242.1| hypothetical protein OsJ_13305 [Oryza sativa Japonica Group]
Length = 688
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/687 (56%), Positives = 483/687 (70%), Gaps = 60/687 (8%)
Query: 31 SIIFTTLGRSDYAFDIYTLPIS---DRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
+I+FTTLGRS Y FDI++LP++ P A E+++TDG SVN+NG+F
Sbjct: 29 TIVFTTLGRSRYEFDIFSLPLAPSPHNPAAAAELRLTDGVSVNYNGNFA----------- 77
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
P +++V+ERNG+ N+Y V + R ALE +
Sbjct: 78 ----------------PASDSILFVSERNGSLNLYLSPV------PSSRREALESASSSS 115
Query: 148 STRVQV--PLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTEL 203
S+ PLL I++KD+P L+ G L+YVST PR+SWAAVYSTEL
Sbjct: 116 SSAAATISPLLPWEP-----IALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTEL 170
Query: 204 KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
TG TRRLTP GVADFSPAVSPSG++TA AS G GW GEVE L TDIY+F T DG++R
Sbjct: 171 STGRTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRS 230
Query: 264 KIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323
+ +GGWP W DE+T+FFHR+ + D W VY+ + TG E+ S++R+TPPG HAF
Sbjct: 231 LAIRDGGWPSWADETTVFFHRR-DSDGWYGVYRAEISVTG-DGVEAASVERITPPGFHAF 288
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLV---KNKFIELTRFVSPKTHHLNPFISPD 380
TPA SPG +AVATRR S YRHIE+ D+ KN + E+TR V+P+ HH NPFISPD
Sbjct: 289 TPAASPGAPGLVAVATRRAGSDYRHIEVIDVSSDGKNAYFEVTRPVAPRVHHFNPFISPD 348
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPD-ISLFRFDGSFPSFSPKGDRIAFVEF 438
+RVGYH+CRG R +G++ LLLENIKSP PD SLFR DGSFPSFS G +IAFV
Sbjct: 349 GARVGYHRCRG---RGNGDSPLLLENIKSPGSPDTFSLFRIDGSFPSFSHDGKKIAFVGL 405
Query: 439 PGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
PG+YVVNSDGS RR+++ NAFST WD R+ VVYTS GP+FASE++EVD+++I++ D
Sbjct: 406 PGMYVVNSDGSGGRRKIFSGNAFSTSWDWKRKGVVYTSIGPDFASETTEVDVVAISLGDD 465
Query: 498 DGVSAV--RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D S + ++LT G+NNAFPS SPDGKW+VFRS R+G KNLYI+DAE GE G+ RLTE
Sbjct: 466 DDESTISMKKLTVGGENNAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTE 525
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
GPWSDTMCNWSPDGEWIAFASDR PGSGSF +Y++HPNGTGLR+++ SG +GR NHP+F
Sbjct: 526 GPWSDTMCNWSPDGEWIAFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWF 585
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPD KS+VFTSDY +SAEP+S PH YQPYGEIF + +DGS+++RLT NSFEDGTP+W P
Sbjct: 586 SPDSKSLVFTSDYAAVSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGTPSWTP 645
Query: 676 RFIRPVDVEEV--KNEQCAFEDCHWLN 700
F+ P DV E + +CAF+DCHWLN
Sbjct: 646 YFLEPRDVGETLQASGRCAFQDCHWLN 672
>gi|413932479|gb|AFW67030.1| putative WD40-like beta propeller repeat family protein [Zea mays]
Length = 689
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/712 (54%), Positives = 484/712 (67%), Gaps = 66/712 (9%)
Query: 27 SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFL 86
++ +I+FTTLGRS YAFD++ L I+ + E+++TDG SVN+NG+F SS
Sbjct: 23 ATSGTIVFTTLGRSRYAFDVFALTIAPLSAASAELRLTDGASVNYNGNFAPSSSG----- 77
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
P L++V+ERNG+ N+Y V T + R R ALE+ E
Sbjct: 78 -------------------PPSLLFVSERNGSLNLYLTPV--PTSASARRRDALEEE--E 114
Query: 147 VSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELK 204
+ PLL + I++KD+P L+ G +L+YVST E G PR SWAAVYST L
Sbjct: 115 EDSAPPTPLLPWDP-----IALKDRPSLTPDGAHLVYVSTAEPAGAPRRSWAAVYSTSLA 169
Query: 205 TG-LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
G TRRLTP GVADFSPAVSPSG +TA AS G +GW GEVE L TDIY+F T DG++R
Sbjct: 170 PGRATRRLTPRGVADFSPAVSPSGVWTAAASPGPRGWAGEVEDLRTDIYVFRTSDGSRRA 229
Query: 264 KIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323
V +GGWP W D++T+FFHR+ + D W VY+ L T + + R+TPPG HAF
Sbjct: 230 LAVPDGGWPTWADDTTVFFHRR-DADGWYGVYRARLTFTD--DDVASVVDRITPPGFHAF 286
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLV--------KNKFIELTRFVSPKTHHLNP 375
TPA SPG +AVATRRP S YRHIE+ DL ++ + E+TR V+P+ HH NP
Sbjct: 287 TPAASPGAPGLVAVATRRPGSDYRHIEVIDLSGGGGGANNRSAYYEVTRPVAPRAHHFNP 346
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIA 434
FISPD RVGYH+CRG +G++ LLLE+IK P PD SLFR DGSFPSFS G RIA
Sbjct: 347 FISPDGERVGYHRCRGSG---NGDSPLLLESIKGPAPDTFSLFRIDGSFPSFSHDGKRIA 403
Query: 435 FVEFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493
FV PG+YVVNSDGS RR+V+ NAF T WD R+ V+YTS GP+FASES+EVD+++++
Sbjct: 404 FVGLPGLYVVNSDGSGGRRRVFSGNAFPTTWDWKRKGVIYTSVGPDFASESTEVDVVAVS 463
Query: 494 VDDVDG---VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ D DG ++++LT G+NNAFPS SPDGKW+VFRS R+G+KNLYIMDAE GE G+
Sbjct: 464 LGDGDGDDPSVSIKKLTVGGENNAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEAGGI 523
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
RLTEGPWSDTMCNWSPDGEWIAFASDR NPG GSF +Y++HPNGTGLR+++ S GR
Sbjct: 524 RRLTEGPWSDTMCNWSPDGEWIAFASDRHNPGGGSFAIYMVHPNGTGLRRVVHSADGGRT 583
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
NHP+FSPD K++VFTSDY +SAEPIS PH YQPYGEIF + +DGS ++RLT NSFEDGT
Sbjct: 584 NHPWFSPDSKTLVFTSDYAAVSAEPISNPHHYQPYGEIFTVNIDGSGIRRLTHNSFEDGT 643
Query: 671 PAWGPRFIRPVDVEEV--KNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCG 720
P+W P ++ DV E + CAFEDCHWLN A P+ + CG
Sbjct: 644 PSWTPYHLKAEDVGETLQASGTCAFEDCHWLN---------IAARPDGLMCG 686
>gi|242037461|ref|XP_002466125.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor]
gi|241919979|gb|EER93123.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor]
Length = 690
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/708 (55%), Positives = 491/708 (69%), Gaps = 63/708 (8%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN--EIKITDGESVNFNGHFPSPSSPFLSFLLR 88
+I+FTTLGRS YAFDI+ LP+S + A E+++TDG SVN+NG+F SS
Sbjct: 25 TIVFTTLGRSRYAFDIFALPLSPLSSAAASAELRLTDGVSVNYNGNFAPSSSSSEP---- 80
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
L++V+ERNG+ N+Y V + R R ALE+ E
Sbjct: 81 ------------------PSLLFVSERNGSLNLYRTPVPL-SASAARRREALEE---EDD 118
Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
+ PLL + I++KD+P L+ G +L+YVST E G+PR SWAAVYST L +G
Sbjct: 119 SPTLTPLLPWDP-----IALKDRPSLTPDGAHLVYVSTAEPAGSPRRSWAAVYSTSLASG 173
Query: 207 LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV 266
TRRLTP GVADFSPAVSPSG +TA AS G +GWDGEVE L TDIY+F T DG++R V
Sbjct: 174 ATRRLTPRGVADFSPAVSPSGDWTAAASPGPRGWDGEVEDLRTDIYVFRTSDGSRRTLAV 233
Query: 267 ENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT----GLVSTESVSIQRVTPPGLHA 322
+ GWP W D+ST+FFHR+ + D W VY+ L T G V+ SV + R+TPPG+HA
Sbjct: 234 PDAGWPTWADDSTVFFHRR-DGDGWYGVYRAKLSFTDDDDGGVAVASV-VDRITPPGIHA 291
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDL-----VKNKFIELTRFVSPKTHHLNPFI 377
FTPA SPG +AVATRRP S YRHIE+ D+ + ++TR V+P+ HH NPFI
Sbjct: 292 FTPAASPGAPGLVAVATRRPGSDYRHIEVIDVSGGGGANAAYFDVTRAVAPRAHHFNPFI 351
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFV 436
SPD RVGYH+CRG +G++ LLLE+IKSP PD SLFR DGSFPSFS G RIAFV
Sbjct: 352 SPDGERVGYHRCRGSG---NGDSPLLLESIKSPAPDTFSLFRIDGSFPSFSHDGKRIAFV 408
Query: 437 EFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV- 494
PG++VVNSDGS RR+V+ NAF T WD R+ V+YTS GP+FASES+EVD++++++
Sbjct: 409 GLPGLFVVNSDGSGGRRRVFSGNAFPTTWDWKRKGVIYTSVGPDFASESTEVDVVAVSLG 468
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
DD D ++++LT G+NNAFPS SPDGKW+VFRS R+G+KNLYIMDAE GE G+ RLT
Sbjct: 469 DDDDPKVSIKKLTVGGENNAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEASGIRRLT 528
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
EGPWSDTMCNWSPDGEWIAFASDR NPG GSF +Y++HPNGTGLR+++ S GR NHP+
Sbjct: 529 EGPWSDTMCNWSPDGEWIAFASDRHNPGGGSFGIYMVHPNGTGLRRVVHSTDGGRTNHPW 588
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
FSPD K++VFTSDY +SAEPIS PH YQPYGEIF + +DGS ++RLT NSFEDGTP+W
Sbjct: 589 FSPDSKTLVFTSDYAAVSAEPISNPHHYQPYGEIFTVNIDGSGIRRLTHNSFEDGTPSWT 648
Query: 675 PRFIRPVDVEEV--KNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCG 720
P +++P DV E + CAFEDCHWLN A +P+ + CG
Sbjct: 649 PHYLKPEDVGETLQASGTCAFEDCHWLN---------IAAQPDGLMCG 687
>gi|125546375|gb|EAY92514.1| hypothetical protein OsI_14253 [Oryza sativa Indica Group]
Length = 682
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/683 (55%), Positives = 480/683 (70%), Gaps = 58/683 (8%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRP--TTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
+I+FTTLGRS Y FDI++LP++ P A E+++TDG SVN+NG+F +P+S
Sbjct: 29 TIVFTTLGRSRYEFDIFSLPLAPSPHNPAAEELRLTDGVSVNYNGNF-APAS-------- 79
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
DS +++V+ERNG+ N+Y V R S ++
Sbjct: 80 -----------DS-------ILFVSERNGSLNLYLSPVPSSRREALESASSSAA------ 115
Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
PLL I++KD+P L+ G L+YVST PR+SWAAVYSTEL TG
Sbjct: 116 --TLSPLLPWEP-----IALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTG 168
Query: 207 LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV 266
TRRLTP GVADFSPAVSPSG++TA AS G GW GEVE L TDIY+F T DG++R +
Sbjct: 169 RTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAI 228
Query: 267 ENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
+GGWP W DE+T+FFHR+ + D W VY+ + TG E+ S++R+TPPG HAFTPA
Sbjct: 229 RDGGWPSWADETTVFFHRR-DSDGWYGVYRAEISVTG-DGVEAASVERITPPGFHAFTPA 286
Query: 327 TSPGNNKFIAVATRRPTSSYRHIELFDLV---KNKFIELTRFVSPKTHHLNPFISPDSSR 383
SPG +AVATRR S YRHIE+ D+ KN + E+TR V+P+ HH NPFISPD +R
Sbjct: 287 ASPGAPGLVAVATRRAGSDYRHIEVIDVSDDGKNAYFEVTRPVAPRVHHFNPFISPDGAR 346
Query: 384 VGYHKCRGGSTREDGNNQLLLENIKSP-LPD-ISLFRFDGSFPSFSPKGDRIAFVEFPGV 441
VGYH+CRG R +G++ LLLENIKSP PD SLFR DGSFPSFS G +IAFV PG+
Sbjct: 347 VGYHRCRG---RGNGDSPLLLENIKSPGSPDTFSLFRIDGSFPSFSHDGKKIAFVGLPGM 403
Query: 442 YVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDVDG 499
YVVN DGS RR+++ NAFST WD R V+YTS GP+FASES+EVD+++I++ DD D
Sbjct: 404 YVVNPDGSGGRRKIFSGNAFSTSWDWKRNGVIYTSIGPDFASESTEVDVVAISLGDDDDE 463
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
++++LT G+NNAFPS SPDGKW+VFRS R+G KNLYI+DAE GE G+ RLTEGPWS
Sbjct: 464 TISMKKLTVGGENNAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWS 523
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
DTMCNWSPDGEWIAFASDR PGSGSF +Y++HPNGTGLR+++ SG GR NHP+F PD
Sbjct: 524 DTMCNWSPDGEWIAFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGDGGRTNHPWFGPDS 583
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIR 679
KS+VFTSDY +SAEP+S PH YQPYGEIF + +DGS+++RLT NSFEDGTP+W P +
Sbjct: 584 KSLVFTSDYAAVSAEPVSNPHHYQPYGEIFTVHIDGSNIRRLTHNSFEDGTPSWTPYLLE 643
Query: 680 PVDVEEV--KNEQCAFEDCHWLN 700
P DV E + +CAF+DCHWLN
Sbjct: 644 PRDVGETLQASGRCAFQDCHWLN 666
>gi|326522999|dbj|BAJ88545.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 706
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/693 (53%), Positives = 480/693 (69%), Gaps = 64/693 (9%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDR----PTTANEIKITDGESVNFNGHFPSPSSPFLSFL 86
+I+FTTLGRS YAFD+Y LP++ + A E+++TDG SVN+NG+F +PSS
Sbjct: 32 TIVFTTLGRSRYAFDVYALPLAPSLSIPASPAAELRLTDGASVNYNGNF-APSSD----- 85
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
L++V+ERNG+ NIY + ++ R AL+ +
Sbjct: 86 ---------------------ALLFVSERNGSLNIY---LSPAPPSSSSRREALQLEDGD 121
Query: 147 VSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELK 204
S L + ++++D+P L+ G L+YVST PR SWAAVY+T L
Sbjct: 122 SSPAAPPMPLLPWDP----VALRDRPALTRDGSRLVYVSTAVPAAAPRRSWAAVYATHLP 177
Query: 205 TGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK 264
+G RLTP GVADFSPAVSPSG + A AS G GW GEV+ L TD+Y+F T DG++R
Sbjct: 178 SGRATRLTPPGVADFSPAVSPSGDWAAAASPGEHGWAGEVQDLRTDVYVFRTTDGSRRTL 237
Query: 265 IVENGGWPCWVDESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVSIQRVTPPGLHA 322
+V+NGGWPCW D++TLFFHR+ + D W VY K+ + GL+S + S++R+TPPG HA
Sbjct: 238 LVKNGGWPCWADDATLFFHRR-DSDGWYGVYRAKIEVSDDGLLS--AASVERITPPGFHA 294
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDL-----VKNK-FIELTRFVSPKTHHLNPF 376
FTPA SPG +AVATRRP S YRHIE+ DL ++N + E+TR V+P+ HH NPF
Sbjct: 295 FTPAASPGAPGLVAVATRRPGSEYRHIEVIDLSAGGGIENAAYFEMTRPVAPRAHHFNPF 354
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
+SPD +RVGYH+CRG +G++ LLLE++KSP + SLFR DGS+PSFSP G RIAFV
Sbjct: 355 VSPDGARVGYHRCRGTG---NGDSPLLLESLKSPASE-SLFRIDGSYPSFSPDGRRIAFV 410
Query: 437 EFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV- 494
PG+YVVNSDGS RR+++ NAF T WD R+ V+YTS GP+FASES+EVD++++++
Sbjct: 411 GLPGLYVVNSDGSGGRRKIFSGNAFPTSWDWKRKGVIYTSIGPDFASESTEVDVVAVSLG 470
Query: 495 --DDVDGV---SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+D DG ++++LT G+NNAFPS SPDGKW+VFRS R+G+KNLYIMDAE GE G
Sbjct: 471 DDNDDDGSIYQVSIKKLTVGGENNAFPSPSPDGKWLVFRSGRSGHKNLYIMDAEEGEAGG 530
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ RLT+GPW+DTMCNWSPDGEWIAFASDR NPG GSF +Y++HPN TGLR+++ S GR
Sbjct: 531 IRRLTDGPWTDTMCNWSPDGEWIAFASDRHNPGGGSFAIYMVHPNSTGLRRVVHSADGGR 590
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
NHP+FSPD K +VFTSD +SAEPIS PH YQPYGEIF I +DGS L+RLT NSFEDG
Sbjct: 591 TNHPWFSPDSKRMVFTSDLAAVSAEPISNPHHYQPYGEIFTINIDGSGLQRLTHNSFEDG 650
Query: 670 TPAWGPRFIRPVDVEEV--KNEQCAFEDCHWLN 700
TP+W P F+ P DV E + CAF+DCHWL+
Sbjct: 651 TPSWTPHFLEPRDVGETLRASGSCAFQDCHWLS 683
>gi|255558604|ref|XP_002520327.1| conserved hypothetical protein [Ricinus communis]
gi|223540546|gb|EEF42113.1| conserved hypothetical protein [Ricinus communis]
Length = 540
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/565 (62%), Positives = 410/565 (72%), Gaps = 39/565 (6%)
Query: 170 DKPILSGEYLIYV---STHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPS 226
D PI + LI + + +P PR SWAAVYST LK+G TRRLTPYGVADFSPAVSPS
Sbjct: 2 DHPIFTSTNLIMMPREAPDRDPQKPRASWAAVYSTGLKSGFTRRLTPYGVADFSPAVSPS 61
Query: 227 GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKS 286
G YTAVASYG +GW+GEVE+LSTDIY FLT DGTQRVK+VENGGWP WV++STL+FHR+S
Sbjct: 62 GVYTAVASYGARGWNGEVEVLSTDIYAFLTLDGTQRVKVVENGGWPTWVNDSTLYFHRRS 121
Query: 287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSY 346
EED WISVY+ ILP G S +SV + RVTPPG+HAFTPA+SPGNNKFIAVATRRP S Y
Sbjct: 122 EEDGWISVYRAILPSRGPTSIDSVIVDRVTPPGIHAFTPASSPGNNKFIAVATRRPYSDY 181
Query: 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406
RH+ELFDLVKN F E TR ++P T+H NPFISPDS+RVGYH+C G S + +++ +LEN
Sbjct: 182 RHVELFDLVKNGFTEFTRLIAPNTNHFNPFISPDSARVGYHRCSGSSNGKRSSSRFMLEN 241
Query: 407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDP 466
+KSP+P ISLFR DG FPS+S GD IA +F G+YVVN DG +RR VY AF T+WDP
Sbjct: 242 LKSPVPGISLFRIDGRFPSWSRGGDSIALTKFSGIYVVNPDGLHRRMVYPGLAFPTIWDP 301
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI- 525
R VVY+S GP FAS +++ LTTNG NNAFP DG +
Sbjct: 302 DRPGVVYSSTGPAFASATTQ-------------------LTTNGDNNAFPDRMGDGLCLG 342
Query: 526 -VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
VFR RT LYIMDA GE GL+R+ EG W DTMC+WSPDGEWI F SDR+ PG+G
Sbjct: 343 RVFRVVRT----LYIMDAVEGEKGGLYRVIEGLWDDTMCDWSPDGEWIVFCSDREEPGTG 398
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
SF++Y IHPNGTGLRKL+QSGS GR NH Y SP+GKSIVFT+DY ISAEPIS +QP
Sbjct: 399 SFDLYFIHPNGTGLRKLLQSGSGGRVNHLYISPNGKSIVFTTDYTAISAEPISNQQMFQP 458
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDV---EEVKNEQCAFED--CHWL 699
YGEI+ I LDGS LKRLT NSFEDGTPAWGPR+++P D+ QC+F D WL
Sbjct: 459 YGEIYIINLDGSGLKRLTHNSFEDGTPAWGPRYMKPADLLWPNYGLGSQCSFRDRGWTWL 518
Query: 700 NETPNQRDWGAALEP---EKVQCGV 721
N T N GA +EP K QCG
Sbjct: 519 NMTSNL---GAGVEPLVSSKPQCGA 540
>gi|148907920|gb|ABR17080.1| unknown [Picea sitchensis]
Length = 714
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/690 (51%), Positives = 466/690 (67%), Gaps = 42/690 (6%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTAN--EIKITDGESVNFNGHFPSPSSPFLSFL 86
+ ++ F ++GR+ YAFDIYTLP+ + N E +TDGESVN NG + P +
Sbjct: 37 QGTLAFASVGRAHYAFDIYTLPLQPLRFSTNLEETLVTDGESVNHNGQYLQ--GPGI--- 91
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYD--------TRRNTRSRT 138
QTL+ + P + +V+ER+G +Y + D N+R R
Sbjct: 92 ---QTLMHRLNINTTSTPVENVMAFVSERDGFPELYLNIYLKDNLPLLAEKAEENSR-RE 147
Query: 139 ALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAV 198
ALE ++ + + + +SMKD+P ++G ++YVST R SWAAV
Sbjct: 148 ALEDGKRCLTINFGGVFEEKGKKDMPDLSMKDRPSMAGNSMVYVSTRGQTKASRKSWAAV 207
Query: 199 YSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD 258
YST +KTG TRRLTP G+AD SPAVSPSG++ AS G +GW GE+ L TD+Y+F D
Sbjct: 208 YSTSIKTGRTRRLTPDGIADLSPAVSPSGEWVMAASAGERGWQGEIRDLETDLYVFRASD 267
Query: 259 GTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP 318
G+ R +V++GGWP W D++T+FFHR++E D W SVY+ V++ S ++R+TPP
Sbjct: 268 GSGRRLVVKHGGWPSWADDNTVFFHRQAE-DGWWSVYRAS------VNSSSALVERITPP 320
Query: 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378
G+ AFTPA S +IAVATRRP YRHIE+FDL+K KFI++TR VSP +HH NPF+S
Sbjct: 321 GIDAFTPAASR-TGPWIAVATRRPGHDYRHIEIFDLLKKKFIQVTRLVSPNSHHYNPFVS 379
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-- 436
D R+GYH+CRGG GN +LE I+SPLP +SLFR DGSFPSFSP G IA++
Sbjct: 380 SD--RIGYHRCRGGHV---GNRVPVLEQIRSPLPSLSLFRIDGSFPSFSPDGSLIAYIPN 434
Query: 437 -EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
E+ GVYV+ DGS RR+++ AF T WD R VVYTS GP F +E++ VDI++I
Sbjct: 435 IEYSGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFETETTTVDIVAIYNA 493
Query: 496 DVDGVS----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
D +G S + + LT G NNAFPS SPDGK++VFRS RTG+KNLYIMDAE GE GL
Sbjct: 494 DREGTSESEISYKTLTKEG-NNAFPSPSPDGKFVVFRSGRTGHKNLYIMDAEEGEEGGLW 552
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+LTEGPW+DTMCNWSPDGEWIAFASDRD+PGSG F MY IHPNGTGL +++ S +AGR N
Sbjct: 553 QLTEGPWTDTMCNWSPDGEWIAFASDRDSPGSGGFAMYFIHPNGTGLHRVLNSSTAGRVN 612
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
HP+FSPD KS+VFTSDY G+SAEPIS PHQ+QPYGEIF ++DGS+L+RLT N++EDGTP
Sbjct: 613 HPWFSPDSKSLVFTSDYAGVSAEPISVPHQFQPYGEIFMARVDGSELQRLTHNAYEDGTP 672
Query: 672 AWGPRFIRPVDVE-EVKNEQCAFEDCHWLN 700
+WG FI D+ E ++ +C F+D HWL
Sbjct: 673 SWGRIFIAASDLTGEGESVKCDFDDDHWLQ 702
>gi|302824273|ref|XP_002993781.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii]
gi|300138377|gb|EFJ05147.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii]
Length = 722
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 337/743 (45%), Positives = 449/743 (60%), Gaps = 63/743 (8%)
Query: 1 MKLQTIFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN- 59
M L I S + L + F D ++ F ++GR+ YAFD++ L RP
Sbjct: 1 MALLWIIISSIVLSAPGFANAGDR--IVEGTVAFASVGRAHYAFDVFLLDF--RPWELEN 56
Query: 60 -------EIKITDGESVNFNGHFPSPSSPFLSF-LLRNQTLIQSPGPQDSRDPPPLQLIY 111
E + TDG SVN+NG S + F L + Q G Q LIY
Sbjct: 57 ASLGPHLEFRATDGVSVNYNGALVDDSQRRVIFEALDFRGEQQGDGSQGI-------LIY 109
Query: 112 VTERNGTSNIYYDAVYYDTR-RNTRS---------------RTALEQHGAEVSTRVQVPL 155
V+ER+G + + ++ Y R R RS R ALE HG +++ + L
Sbjct: 110 VSERDGAAEVRFNLFYQGQRDRGERSLGNIESGSQESHGNRRDALEIHGDRGNSQNFIDL 169
Query: 156 LDL---NEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT 212
L +EV ++ D+P ++ +I+VST + R SWAAVYS ++ T RLT
Sbjct: 170 GKLWSSSEVE--PTALYDRPSVADGRVIFVSTRKPREQSRQSWAAVYSMDIVTKKITRLT 227
Query: 213 PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWP 272
P GV D+SP+VSPSGK+ VAS +GW GE+E L TD+Y F DG+ R +V+NGGWP
Sbjct: 228 PEGVTDYSPSVSPSGKFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWP 287
Query: 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNN 332
W D+ST+FFHR++E D W SVYK + S ++ +R+TPPG+HAFTPA S
Sbjct: 288 SWSDDSTVFFHRRAE-DGWWSVYKATFSK----SFTAIREERITPPGVHAFTPAASR-TG 341
Query: 333 KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392
K+IAVATRR S YRH+E+FDL KF +L+ V+P+ HH NPF+SP+S ++GYH+CRG
Sbjct: 342 KWIAVATRRAGSLYRHVEVFDLGSRKFHKLSELVAPEAHHYNPFVSPESDKIGYHRCRGK 401
Query: 393 STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGS 449
LE+IKSP+P ISL R DG FP FSP G+ IAF+ + G+YV +GS
Sbjct: 402 GVTP------RLEHIKSPVPGISLVRVDGDFPVFSPDGESIAFIPDLDEGGIYVTRLNGS 455
Query: 450 NRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI-NVDDV----DGVSAVR 504
+V+ K AF WD R+ V+YTS GP F E + V I+SI N D++ G +
Sbjct: 456 GMTKVFDKPAFGLSWDKQRKGVLYTSYGPGFVPEDTIVHIVSILNADELIAGGGGAVKWK 515
Query: 505 RLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
LT +G KNNAFPS SPDGKWIVFRS R+G+KNLYIMDA GE L RLTEG W+DTM
Sbjct: 516 ILTKSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMA 575
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
+WS DGEWIAF+SDR NPG GSF++Y + P+G+ L +++ S + GR NHP+FSPD +S+V
Sbjct: 576 SWSHDGEWIAFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLV 635
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP-RFIRPVD 682
FT+DY G+SA+PI+ P Q+QPYGEIF ++DGS+L RLT N++EDGTP+WGP +
Sbjct: 636 FTTDYAGVSADPIAVPAQFQPYGEIFMARIDGSELVRLTHNAYEDGTPSWGPVKLDSSAL 695
Query: 683 VEEVKNEQCAFEDCHWLNETPNQ 705
E K +C F D WL Q
Sbjct: 696 TGEGKKARCGFRDTRWLKPVIAQ 718
>gi|302823172|ref|XP_002993240.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii]
gi|300138910|gb|EFJ05661.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii]
Length = 717
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 337/735 (45%), Positives = 450/735 (61%), Gaps = 62/735 (8%)
Query: 3 LQTIFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN--- 59
L IF S++ LSA A A D ++ F ++GR+ YAFD++ L RP
Sbjct: 4 LWIIFSSIV--LSAPGFANAG-DRIVEGTVAFASVGRARYAFDVFLLDF--RPWELENAS 58
Query: 60 -----EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTE 114
E + TDG SVN+NG S + F + G Q D LIYV+E
Sbjct: 59 LGPHLEFRATDGVSVNYNGALVDDSQRRVIF-----EALDFRGEQQG-DASQGILIYVSE 112
Query: 115 RNGTSNIYYDAVYYDTR-RNTRS---------------RTALEQHGAEVSTRVQVPLLDL 158
R+G + + ++ Y R R RS R ALE HG +++ + L L
Sbjct: 113 RDGAAEVRFNLFYQGQRDRGERSLGNIESGSQESHGNRRDALEIHGDRGNSQNFIDLGKL 172
Query: 159 ---NEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG 215
+EV ++ D+P ++ +I+VST + R SWAAVYS ++ T RLTP G
Sbjct: 173 WSSSEVE--PTALYDRPSVADGRVIFVSTRKRREQSRQSWAAVYSMDIVTKKITRLTPEG 230
Query: 216 VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWV 275
V D+SP+VSPSGK+ VAS +GW GE+E L TD+Y F DG+ R +V+NGGWP W
Sbjct: 231 VTDYSPSVSPSGKFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWPSWS 290
Query: 276 DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFI 335
D+ST+FFHR++E D W SVYK + S ++ +R+TPPG+HAFTPA S K+I
Sbjct: 291 DDSTVFFHRRAE-DGWWSVYKATFSK----SFTAIREERITPPGVHAFTPAASR-TGKWI 344
Query: 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395
AVATRR S YRH+E+FDL KF +++ V+P+ HH NPF+SP+S ++GYH+CRG
Sbjct: 345 AVATRRAGSLYRHVEVFDLGSRKFHKVSELVAPEAHHYNPFVSPESDKIGYHRCRGKGVT 404
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGSNRR 452
LE+IKSP+P ISL R DG FP FSP G+ IAF+ + G+YV +GS
Sbjct: 405 P------RLEHIKSPVPGISLVRVDGDFPVFSPDGESIAFIPDLDEGGIYVTRLNGSGLT 458
Query: 453 QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI-NVDDV----DGVSAVRRLT 507
+V+ K AF WD R+ V+YTS GP F E + V I+SI N D++ G + LT
Sbjct: 459 KVFDKPAFGLSWDKQRKGVLYTSYGPGFVPEDTIVHIVSILNADELIAGGGGEVKWKILT 518
Query: 508 TNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
+G KNNAFPS SPDGKWIVFRS R+G+KNLYIMDA GE L RLTEG W+DTM +WS
Sbjct: 519 KSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWS 578
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
DGEWIAF+SDR NPG GSF++Y + P+G+ L +++ S + GR NHP+FSPD +S+VFT+
Sbjct: 579 HDGEWIAFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFTT 638
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP-RFIRPVDVEE 685
DY G+SA+PI+ P Q+QPYGEIF ++DGS+L RLT N++EDGTP+WGP + E
Sbjct: 639 DYAGVSADPIAVPAQFQPYGEIFMARIDGSELVRLTHNAYEDGTPSWGPVKLDSSALTGE 698
Query: 686 VKNEQCAFEDCHWLN 700
K +C F D WL
Sbjct: 699 GKKARCGFRDTRWLK 713
>gi|302806842|ref|XP_002985152.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii]
gi|300146980|gb|EFJ13646.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii]
Length = 669
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/710 (43%), Positives = 425/710 (59%), Gaps = 77/710 (10%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQ 90
+++F ++GRS YAFD + L I+ T E +TDG SVNFN F
Sbjct: 8 TVVFASVGRSHYAFDAFALDIA----TLKEEVLTDGVSVNFNAQFVE------------- 50
Query: 91 TLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTR 150
DP P +I+V+ER G SNI+ R++ S++ + H S+
Sbjct: 51 -----------DDPKPSAVIFVSERTGASNIFL------RRQSLTSKSDRDDH----SST 89
Query: 151 VQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTP---RTSWAAVYSTELKTGL 207
+++ LD + G + + G +I+ ST +P R A++S L+ GL
Sbjct: 90 LKLGSLDAGD---GFLYCDRPCVAGGGRIIFASTKSSPEISQNLRQPSTAIFSACLRIGL 146
Query: 208 TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE 267
TRRLTP GVAD+SPA+SPS K+ AVAS K W GE+ L T ++IF DG+ R +VE
Sbjct: 147 TRRLTPEGVADYSPALSPSKKWIAVASNAGKPWSGEIHELETSLWIFKAEDGSSRKMVVE 206
Query: 268 NGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI----QRVTPPGLHAF 323
GGWP W DE T+FFH++S EDDW S+YK +LP++ L ++ I +RVTPPG+HAF
Sbjct: 207 RGGWPTWSDERTIFFHKRSPEDDWWSIYKAVLPES-LEDLDAAKIDQAVERVTPPGVHAF 265
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS-S 382
TPA S +N +I VAT R ++ RHIELFDL K F+ +T + P+ HH NPF+S S +
Sbjct: 266 TPAASRTSN-WIVVATHRSNTTSRHIELFDLSKGSFLPVTLELHPELHHFNPFVSATSDT 324
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAF-VEF-- 438
+GYH+C R DG+ LE++ P DI+L R DG+FPS S G IA+ +F
Sbjct: 325 LIGYHRC-----RNDGSIVPTLEHVACPANNDITLVRIDGAFPSISSDGALIAYNTDFEA 379
Query: 439 --PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD- 495
GV V DGSNR+++ AF+T W+P + +YTS G FA E + V I+S+ D
Sbjct: 380 SDSGVMVAKLDGSNRKRILTGLAFTTCWNPCKPGTIYTSVGHIFAEERAMVHIVSLTFDV 439
Query: 496 ----------DVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
S+V+ L+ G NNAFPS SPDGK +VFRS R+G+KNLYIMDAE
Sbjct: 440 TALEDHSSSSSSTLESSVKVLSKPGTNNNAFPSCSPDGKNLVFRSGRSGHKNLYIMDAEL 499
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-Q 603
GE G+ LTEGPW DTM WSPDG WIAF+S RD P + F +YL+HP+G+ L ++ +
Sbjct: 500 GEDGGIRALTEGPWVDTMPCWSPDGNWIAFSSSRDGPSNEFFAIYLVHPDGSELHRVFPE 559
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
S + GR NH FSPD ++++FT+D GGISAEP+S +Q+QPYGE+F KLDGS+L+R T
Sbjct: 560 SSTRGRCNHVCFSPDSQTLLFTADCGGISAEPVSLANQFQPYGELFSCKLDGSELRRWTH 619
Query: 664 NSFEDGTPAWGPRFIRPVDVEEVKNEQCA-FEDCHWLNE-TPNQRDWGAA 711
N++EDGTP WGP + P + + E A F+DC WL+ T + + AA
Sbjct: 620 NAYEDGTPCWGPLRLDPSSISKQGQELHANFQDCLWLSAVTEKMKQYAAA 669
>gi|168057343|ref|XP_001780675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667943|gb|EDQ54561.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 710
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 307/701 (43%), Positives = 412/701 (58%), Gaps = 70/701 (9%)
Query: 25 DSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA---------NEIKITDGESVNFNGHF 75
D + +I F+TLGR +AFD+YT+ S E ++T GESVN+N
Sbjct: 23 DGDAGGTIGFSTLGRLSFAFDVYTVVFSQMGVLRGGGGGVGDFQETRVTLGESVNYNAQ- 81
Query: 76 PSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTR 135
L++ G D P L L+YV+E G+ +Y D
Sbjct: 82 ----------------LLEGSG----SDVPEL-LLYVSEVEGSPQLYLDV-------PLT 113
Query: 136 SRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSW 195
R A+++ S R+++ LN + + D+P + G+ I+VST E+ G P W
Sbjct: 114 GRFAIDRLPTRSSRRIELLADRLNAPSKAF--LNDRPSMIGDVFIFVSTEEDVGKPVQGW 171
Query: 196 AAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL 255
AVYS T + +RLTP G+ D+SPAVSPSG++ AV S +GW E+E L+ D+YIF
Sbjct: 172 NAVYSLNFITSVVKRLTPPGITDYSPAVSPSGEWVAVGSNEGRGWQREIEALNLDLYIFK 231
Query: 256 TRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV 315
DG+QR IV NGGWP W+D++T++FHR + +D W S++KV + T + +RV
Sbjct: 232 AEDGSQRRMIVRNGGWPTWMDDNTVYFHRIA-DDGWWSIFKV-----NVSDTSADQAERV 285
Query: 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNP 375
TP G+HAFTPA S + K+IAVATRR +S+RHIE+F+L KF LT ++P THH NP
Sbjct: 286 TPSGVHAFTPAASR-SGKWIAVATRR--ASFRHIEIFELESKKFFPLTALINPNTHHYNP 342
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLL---LENIKSPLPDISLFRFDGSFPSFSPKGDR 432
F+SP S+++GYH+CRG D + Q + +E KSPLP +SL R GSFPS SP G
Sbjct: 343 FVSPSSNKIGYHRCRG----LDQDAQTVDPQIEYQKSPLPGVSLARIKGSFPSISPDGSL 398
Query: 433 IAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
++FV+ + V+ DGS R ++ N F WDP + +Y S G FAS + V
Sbjct: 399 VSFVDSGNDSSTLAVMKLDGSENRVIHRSNVFGERWDP-KGKTIYASQGRVFASVKTVVR 457
Query: 489 IISINVDDVDGVSA------VRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
I++I D + A + LT G NNAFP SPDGK++VFRS RTG KNLYIMD
Sbjct: 458 IVAIQDSDTADLGADETSHNYKYLTKEGTGNNAFPCPSPDGKYVVFRSGRTGRKNLYIMD 517
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRK 600
A GGE L RLTEG W DTM WSPD EWIAF+S+R +P G SF +YLI PNGT L
Sbjct: 518 AAGGEEKYLRRLTEGRWRDTMPAWSPDNEWIAFSSNRAHPTGERSFSLYLIRPNGTDLHM 577
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
L+ +G G A H FSPD K I FTS++ G+SAEPIS PH YQPYG IF I +DG+ L R
Sbjct: 578 LLDTGVGGLAMHAVFSPDSKRIAFTSNWAGVSAEPISFPHAYQPYGTIFVINIDGTGLTR 637
Query: 661 LTQNSFEDGTPAWGPRFI-RPVDVEEVKNEQCAFEDCHWLN 700
LT N++EDGTP WG + +P + + C F+D +L+
Sbjct: 638 LTHNAYEDGTPTWGRLPLPKPAISSDGRRSSCDFDDVSFLS 678
>gi|449436369|ref|XP_004135965.1| PREDICTED: uncharacterized protein LOC101214858 [Cucumis sativus]
gi|449488783|ref|XP_004158170.1| PREDICTED: uncharacterized protein LOC101226808 [Cucumis sativus]
Length = 642
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 283/663 (42%), Positives = 402/663 (60%), Gaps = 82/663 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQ 90
+++FTT+G + Y FDI+++P++ + E ++TDG SVNFN F L NQ
Sbjct: 7 AVLFTTVGLNQYGFDIFSVPLN---SLTVERQLTDGISVNFNAQF-----------LNNQ 52
Query: 91 TLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTR 150
L +++++ER+G+S IY N+ + G+
Sbjct: 53 ----------------LSVVFISERSGSSRIYLS-----DSPNSSPKLLASAPGS----- 86
Query: 151 VQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELK-TGLTR 209
D+PI++ L+++S HENP P TSWAA+YST L
Sbjct: 87 ----------------CFHDRPIVTNGRLLFISAHENPHKPFTSWAALYSTPLDGHDSVT 130
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
RLTP G DFSPAVS SGK+ AVASYG++ W GE L+ +I +F + D QRV + G
Sbjct: 131 RLTPLGSVDFSPAVSESGKFVAVASYGSRSWGGEFHELNLEIVVFKSSDPGQRVVVAGRG 190
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS--IQRVTPPGLHAFTPAT 327
GWP W +ST+FFHRK+ +D W S++KV +P+ S SVS RVTP GLH FTPA
Sbjct: 191 GWPSWSGDSTVFFHRKA-DDGWWSIFKVEIPENLDSSRSSVSPVAIRVTPAGLHCFTPAA 249
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
+ + + VATRR S YRHIE+FD +FI +T+ ++P+ HH NPF+SPDS+ +GYH
Sbjct: 250 M-NDGRRVVVATRRADSKYRHIEIFDSELEEFIPITQKLNPEFHHYNPFVSPDSNFIGYH 308
Query: 388 KCRGGSTREDGNNQLL--LENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV 444
+ RG ST+ ++L+ L + SP+ ++ + R +GSFP+ SP GD IAF F G+ +V
Sbjct: 309 RFRGESTQ----SELIPYLYPVISPIKELQIIRVNGSFPTPSPDGDLIAFNPGFIGLQIV 364
Query: 445 NSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDI--ISINVDDVDGVS 501
DGS R V + AF W P + V+YTS GP F + ++ V I I+IN D D VS
Sbjct: 365 KFDGSKCRTVLKDRTAFCNSWSPTEKNVIYTSLGPIFGAVTATVQIARITINSGDSDEVS 424
Query: 502 AVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEGPW 558
++ T N NNAFP+ SPDGK++VFRS RTG+KNLYI+DA GE G L +LT+GPW
Sbjct: 425 NEVKILTKDNTGNNAFPACSPDGKFLVFRSGRTGHKNLYIVDAMKGEFEGELRQLTDGPW 484
Query: 559 SDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAG-------RA 610
DTM NWSP G+ I F+S+ NP + +F +Y+I P+G+GLR++ +G G R
Sbjct: 485 IDTMPNWSPRGDLIVFSSNMHNPKNTEAFSIYVIRPDGSGLRRVYVAGPEGSSEVDRERI 544
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
NH FS DG ++FT++ G++AEP+S P+Q+QPYG++F ++LDG+ L+RLT N++E+GT
Sbjct: 545 NHVCFSRDGNWLLFTANLSGVTAEPVSLPNQFQPYGDLFVVRLDGTGLRRLTCNAYENGT 604
Query: 671 PAW 673
P W
Sbjct: 605 PTW 607
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+S ++ L N +FP+ SPDG I F G+ L I+ +G + + +
Sbjct: 327 ISPIKELQIIRVNGSFPTPSPDGDLIAFNP---GFIGLQIVKFDGSKCRTVLKDRTA--- 380
Query: 560 DTMCN-WSPDGEWIAFASDRDNPGS--GSFEMYLIHPNG------TGLRKLIQSGSAGRA 610
CN WSP + + + S G+ + ++ I N + K++ + G
Sbjct: 381 --FCNSWSPTEKNVIYTSLGPIFGAVTATVQIARITINSGDSDEVSNEVKILTKDNTGNN 438
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P SPDGK +VF S G H+ + K + +G +L++LT + D
Sbjct: 439 AFPACSPDGKFLVFRSGRTG---------HKNLYIVDAMKGEFEG-ELRQLTDGPWIDTM 488
Query: 671 PAWGPR 676
P W PR
Sbjct: 489 PNWSPR 494
>gi|225437689|ref|XP_002279803.1| PREDICTED: uncharacterized protein LOC100264112 [Vitis vinifera]
Length = 677
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/669 (42%), Positives = 400/669 (59%), Gaps = 85/669 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN---EIKITDGESVNFNGHFPSPSSPFLSFLL 87
+I FTT+GR Y FD+++L + P N E ++T G S+NFNGHF L
Sbjct: 33 TIAFTTVGRPHYGFDLFSLNLD--PNLINHTSERRLTGGTSINFNGHF----------LD 80
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
NQTL+ YV+ER+G+ IY ++
Sbjct: 81 ENQTLV-----------------YVSERSGSPRIY-----------------------QI 100
Query: 148 STRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
V P L V G + D+PI+ L +VS HE P P SW+AVYST L
Sbjct: 101 RPGVTKPE-QLLSVPGSL--YHDRPIVKNGRLYFVSAHERPEKPFISWSAVYSTGLDDKA 157
Query: 208 TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE 267
+LTP+GV D+SPA+S SGK+ AVASYG++ W GE L TDI +F + +RV + E
Sbjct: 158 VVQLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRESEPEKRVVVCE 217
Query: 268 NGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327
GGWP W +S L+FHR++ +D W S++ V LP+ S+ S + +R+TPP +H FTPA
Sbjct: 218 RGGWPTWSGDSNLYFHRQA-DDGWWSIFSVNLPEGFQSSSISEAPRRITPPRVHCFTPAA 276
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
G+ + IAVATRR S++RHIE+FD+ KF +T ++P HH NPF+SP+ +GYH
Sbjct: 277 MQGSKR-IAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVSPECGFLGYH 335
Query: 388 KCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF-VEFP---GVY 442
+ RG S+ G + + L+ + SP+ ++ + R +GSFPSFSP GD IAF +F G+
Sbjct: 336 RFRGESS--PGESTIPHLDPVVSPINELRMLRLNGSFPSFSPAGDLIAFNHDFEAKGGLK 393
Query: 443 VVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV------D 495
+V SDGS R V + AF W P + V+YTS GP F S + V I I+ D
Sbjct: 394 IVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSVGPIFESVKATVQIARISFDPSYLDD 453
Query: 496 DVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-GYGLHR 552
D + + A ++ T + NNAFPS SPDGK +VFRS R+G KNLYI+DA GE G+ +
Sbjct: 454 DREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVNGELEGGIRQ 513
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKLIQSGSAG--- 608
LTEGPW DTM +WSPDG+ IAF+S+R NP + +F +Y+I P+G+ LR++ +GS G
Sbjct: 514 LTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVYVAGSEGSVD 573
Query: 609 ----RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
R NH FS D + ++F ++ GG++AEPIS P+Q+QPYG++F ++LDGS LKRLT N
Sbjct: 574 VDRERINHVCFSADCEWLLFAANLGGMTAEPISLPNQFQPYGDLFVVRLDGSGLKRLTWN 633
Query: 665 SFEDGTPAW 673
+E+GTPAW
Sbjct: 634 GYENGTPAW 642
>gi|147767869|emb|CAN71280.1| hypothetical protein VITISV_027089 [Vitis vinifera]
Length = 677
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 284/669 (42%), Positives = 395/669 (59%), Gaps = 85/669 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN---EIKITDGESVNFNGHFPSPSSPFLSFLL 87
+I FTT+GR Y FD+++L + P N E ++T G S+NFNGHF L
Sbjct: 33 TIAFTTVGRPHYGFDLFSLNLD--PNLINHTSERRLTGGTSINFNGHF----------LD 80
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
NQTL+ YV+E +G+ IY ++
Sbjct: 81 ENQTLV-----------------YVSEXSGSPRIY-----------------------QI 100
Query: 148 STRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
V P L V G + D+PI+ L +VS HE P P SW+AVYST L
Sbjct: 101 RPGVTKPE-QLLSVPGSL--YHDRPIVKNGRLYFVSAHERPEKPFISWSAVYSTGLDDKA 157
Query: 208 TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE 267
LTP+GV D+SPA+S SGK+ AVASYG++ W GE L TDI +F + +RV + E
Sbjct: 158 VVXLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFREXEPEKRVVVCE 217
Query: 268 NGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327
GGWP W +S L+FHR++ +D W S++ V LP+ S+ S + +R+TPP +H FTPA
Sbjct: 218 RGGWPTWSGDSNLYFHRQA-DDGWWSIFSVTLPEXFQSSSISEAPRRITPPRVHCFTPAA 276
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
G+ + IAVATRR S++RHIE+FD+ KF +T ++P HH NPF+SP+ +GYH
Sbjct: 277 MQGSKR-IAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVSPECGFLGYH 335
Query: 388 KCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF-VEFP---GVY 442
+ RG S+ G + + L+ + SP+ ++ + R +GSFP FSP GD IAF +F G+
Sbjct: 336 RFRGESS--PGESTIPHLDPVXSPINELRMLRLNGSFPXFSPAGDLIAFNHDFEAKGGLK 393
Query: 443 VVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV------D 495
+V SDGS R V + AF W P + V+YTS GP F S + V I I+ D
Sbjct: 394 IVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSXGPIFESVKATVQIARISFDPSYLDD 453
Query: 496 DVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-GYGLHR 552
D + + A ++ T + NNAFPS SPDGK +VFRS R+G KNLYI+DA GE G+ +
Sbjct: 454 DREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVNGELEGGIRQ 513
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKLIQSGSAG--- 608
LTEG W DTM +WSPDG+ IAF+S+R NP + +F +Y+I P+G+ LR++ +GS G
Sbjct: 514 LTEGXWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVYVAGSEGSVD 573
Query: 609 ----RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
R NH FS D + ++F ++ GG +AEPIS P+Q+QPYG++F ++LDGS LKRLT N
Sbjct: 574 VDRERINHVCFSADCEWLLFAANLGGXTAEPISLPNQFQPYGDLFVVRLDGSGLKRLTWN 633
Query: 665 SFEDGTPAW 673
+E+GTPAW
Sbjct: 634 GYENGTPAW 642
>gi|358347278|ref|XP_003637686.1| Protein tolB [Medicago truncatula]
gi|355503621|gb|AES84824.1| Protein tolB [Medicago truncatula]
Length = 650
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/666 (42%), Positives = 389/666 (58%), Gaps = 82/666 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQ 90
+I+F T+GR+ Y FD++ +++ N+ ++TDG SVNFN F + +Q
Sbjct: 7 TIVFNTVGRTQYGFDVFYTHLNN---NHNDHRLTDGISVNFNAQFTND----------HQ 53
Query: 91 TLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTR 150
T++ +V+ER G+ Y TRS E
Sbjct: 54 TIV-----------------FVSERTGSPRFYL----------TRSENKPE--------- 77
Query: 151 VQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELK-TGLTR 209
+ +P L N + +D PI+ + + STH+ P S +AVYST + TG
Sbjct: 78 LLLPSLPNNTL------FQDCPIIKNSKIYFSSTHDQPNALFKSASAVYSTAVDGTGTLT 131
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
RLTP+GV D+SPAVS +G AVASYG++ WDG+ L TDI +F RV + E G
Sbjct: 132 RLTPHGVVDYSPAVSLTGNLIAVASYGSRNWDGDFRELKTDIVVFEESVPENRVVVAERG 191
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP 329
GWP W+ +ST+FFHR + +D W S+++ L + L +S I R+TPPGLH FTPA
Sbjct: 192 GWPTWLGDSTVFFHRIA-DDGWWSIFRADLKDSNLTGIQSSPI-RITPPGLHCFTPAAIQ 249
Query: 330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKC 389
+N+ IAVATRR S YRHIE+FDL F ++T V+P HH NPF+SPDS +GYH+
Sbjct: 250 NSNR-IAVATRRKESDYRHIEIFDLETKTFQKITYSVNPDFHHYNPFVSPDSCYIGYHRF 308
Query: 390 RGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------FPGVYV 443
RG S + + + L+ +KSP+ DI L R +GSFPSFSP GD IAF GV +
Sbjct: 309 RGESVQGE-STYPHLDQVKSPVDDIRLLRLNGSFPSFSPDGDFIAFNHELDGNLNGGVKI 367
Query: 444 VNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD------D 496
+ S+GS R + + F W P + V+YTS GP F S + V I I + D
Sbjct: 368 IRSNGSKRWSLLKGRTCFGNSWSPTEKNVIYTSIGPIFESVTKTVQIARIEFEPDHLSKD 427
Query: 497 VDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY--GLHR 552
+ + ++ T + NNAFPS SPDGK+IVFRS RTG+KNLYI+DA GE GL R
Sbjct: 428 REEIPFTLKILTKYDSGNNAFPSCSPDGKFIVFRSGRTGFKNLYIVDAVNGEEVDGGLRR 487
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDR-DNPGSGSFEMYLIHPNGTGLRKL-IQSGSAG-- 608
LTEG W DTM WSP G+ IAF+S+R D S F +Y+++ +G+G+R++ I G G
Sbjct: 488 LTEGEWIDTMPCWSPKGDLIAFSSNRHDAKNSEVFGIYVVNVDGSGVRRVEIGKGVDGER 547
Query: 609 -RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
R NH FS DG+ ++FT++ GG+SAEP+ P+Q+QPYG++F +KLDGS L+RLT N++E
Sbjct: 548 ERLNHVCFSGDGEWLLFTANLGGVSAEPVGLPNQFQPYGDLFVVKLDGSGLRRLTCNAYE 607
Query: 668 DGTPAW 673
+GTP W
Sbjct: 608 NGTPTW 613
>gi|255548311|ref|XP_002515212.1| conserved hypothetical protein [Ricinus communis]
gi|223545692|gb|EEF47196.1| conserved hypothetical protein [Ricinus communis]
Length = 666
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/711 (38%), Positives = 405/711 (56%), Gaps = 91/711 (12%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPI-----SDRPTTANEIKITDGESVNFNGHFPSPSSPFL 83
+ +++FTT+GR Y FD++++ + S + ++E +TDG S+N+N F +
Sbjct: 5 KGTVVFTTVGRPSYGFDVFSIKLPSDLNSFHFSNSDEHCLTDGTSINYNAQFVTQQH--- 61
Query: 84 SFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQH 143
+NQ+++ Y++ER+G +Y
Sbjct: 62 ---HQNQSIV-----------------YISERSGFPAMYLSK------------------ 83
Query: 144 GAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL 203
+S Q+P + D+PI+ + L ++S HE P SW+A+YST+L
Sbjct: 84 -PNLSKPEQLP-------SAPESLFHDRPIIKNDRLYFISAHEKPDQLFRSWSALYSTDL 135
Query: 204 KTGLTR-----RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD 258
RLTP+GV DFSPA+S SG + AVASYG++ W GE L+TDI +F D
Sbjct: 136 SHSRREGDNVTRLTPFGVVDFSPAISLSGNFIAVASYGSRPWSGEFHELNTDIVVFKASD 195
Query: 259 GTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI-QRVTP 317
+R + E GGWP W +S ++FHR++ ED W S+++V P+ + SV+ RVTP
Sbjct: 196 PDKRAVVSERGGWPTWSLDSAIYFHRQA-EDGWWSIFQVKFPENMDDVSGSVNAPLRVTP 254
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+H FTPA + K IAVATRRP YRHIE+FDL F +T ++P HH NPF+
Sbjct: 255 PGVHCFTPAAM-HDGKRIAVATRRPDKKYRHIEIFDLASGTFYPVTELLNPSLHHYNPFV 313
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV- 436
S DS +GYH+ RGGS + + LE ++SP+ D+ + R +GSFPSFSP G+ +AF
Sbjct: 314 SADSLFIGYHRFRGGSGHGERTIR-NLEPVRSPIKDLRMLRLNGSFPSFSPDGNLMAFNP 372
Query: 437 ----EFPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
G+ VV S+GS R + + AF W P + V++TS GP F S + V I
Sbjct: 373 DFVDSSGGLKVVKSNGSKRWTLIKDRVAFCNSWSPTEKHVIFTSLGPIFESAKTTVQIAR 432
Query: 492 INVDDVDGVSAVRRLTTNGK--------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ D S ++ + K NNAFPS SPDG+ +VFRS R+G+KNLYI+DA
Sbjct: 433 VTFKPSDLKSDHNEVSCDVKILTREDTGNNAFPSCSPDGESLVFRSGRSGHKNLYIIDAV 492
Query: 544 GGE-GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKL 601
GE G+ +LTEGPW DTM +WSP G+ IAF+S+R NP + +F +Y+I P+G+GL+++
Sbjct: 493 EGEFNGGIRQLTEGPWIDTMPSWSPKGDLIAFSSNRHNPNNVNAFSIYVIRPDGSGLKRI 552
Query: 602 IQSGSA-------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+GS GR NH FS DG+ ++FT + G ++AEP+S P+Q+QPYG++ +LD
Sbjct: 553 HVAGSEGSSEGERGRINHVCFSRDGEWLLFTGNLGSVTAEPVSWPNQFQPYGDLHVTRLD 612
Query: 655 GSDLKRLTQNSFEDGTPAWGPRFIRPVDV----EEVKNEQCA-FEDCHWLN 700
GS L RLT N FE+GTPAW PR +D E+V+++ F+D W+N
Sbjct: 613 GSGLSRLTWNGFENGTPAWHPRSELELDSLCLDEDVEDKLTGQFDDPLWIN 663
>gi|326532988|dbj|BAJ89339.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/674 (40%), Positives = 387/674 (57%), Gaps = 89/674 (13%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN-----EIKITDGESVNFNGHFPSPSSPFLSF 85
+++F ++G + + FD++++ + P + + E + TDG SVNFN F
Sbjct: 10 TVVFASVGVTSFGFDVFSVAVPQTPESVSAAGLAERRHTDGVSVNFNAQFA--------- 60
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
D ++ +V+ER G++ ++ R E+
Sbjct: 61 -----------------DDVGEEVAFVSERTGSAGLFL------------CRPESER--- 88
Query: 146 EVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT 205
VPL V G + D+P + G L +VS+HE P SWAAVY+TEL +
Sbjct: 89 ------AVPL---PVVEGSL--FHDRPAVRGGRLYFVSSHEKPAAWFRSWAAVYATELGS 137
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI 265
T R+TP GVAD SPAVS SG+ AVASYG + W + L T++ +F D +RV +
Sbjct: 138 EETVRVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAVFRAADPARRVVV 197
Query: 266 VENGGWPCWVDESTLFFHRKSEEDDWISVYKV-ILPQTGLVSTESVSIQRVTPPGLHAFT 324
GGWP W E T+FFHR + +D W SV++V I P+T S + RVTPPG+H FT
Sbjct: 198 AARGGWPTWHGEGTVFFHRVA-DDGWWSVFRVDISPET---LEPSGAETRVTPPGVHCFT 253
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRV 384
PA + ++IAVATRR + RHIELFDL +F +T ++P+ HH NPF SP R+
Sbjct: 254 PAAAGRGCRWIAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHYNPFFSPSGGRL 313
Query: 385 GYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEFPG 440
GYH+ RG + D + L+ ++SP+ I + R GSFPSFSP A F + PG
Sbjct: 314 GYHRFRGAGVQGD-SMIPYLQPVRSPVSSIRMLRVHGSFPSFSPDAKHFALNGDFFKSPG 372
Query: 441 VYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD---- 495
V ++ +DGS R + + N F T W P VV+TS GP F + + V + I D
Sbjct: 373 VTILRADGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSEL 432
Query: 496 -----DVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
DVD AV+ LT N+AFP+VSP G+W+VFRS R+G+KNLYI+DA GE
Sbjct: 433 TDDRGDVD--VAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGE-ET 489
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGTGLRKLIQSGSAG 608
+ R+T+G W DTM +WSPDGE IAF+S+R P + + F +YL+ P+GTGLR++ +G AG
Sbjct: 490 IRRVTDGEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAG 549
Query: 609 -------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
R NH FSPDG+ ++FT++ GG+ AEPIS P+Q+QPYG+++ +LDGS + RL
Sbjct: 550 SAEADKERINHVCFSPDGQWLLFTANLGGVMAEPISGPNQFQPYGDLYVCRLDGSGVLRL 609
Query: 662 TQNSFEDGTPAWGP 675
T N++E+GTP WGP
Sbjct: 610 TCNAYENGTPTWGP 623
>gi|326491569|dbj|BAJ94262.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/674 (40%), Positives = 386/674 (57%), Gaps = 89/674 (13%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN-----EIKITDGESVNFNGHFPSPSSPFLSF 85
+++F ++G + + FD++++ + P + + E + TDG SVNFN F
Sbjct: 10 TVVFASVGVTSFGFDVFSVAVPQTPESVSAAGLAERRHTDGVSVNFNAQFA--------- 60
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
D ++ +V+ER G++ ++ R E+
Sbjct: 61 -----------------DDVGEEVAFVSERTGSAGLFL------------CRPESER--- 88
Query: 146 EVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT 205
VPL V G + D+P + G L +VS+HE P SWAAVY+TEL +
Sbjct: 89 ------AVPL---PVVEGSL--FHDRPAVRGGRLYFVSSHEKPAAWFRSWAAVYATELGS 137
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI 265
T R+TP GVAD SPAVS SG+ AVASYG + W + L T++ +F D +RV +
Sbjct: 138 EETVRVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAVFRAADPARRVVV 197
Query: 266 VENGGWPCWVDESTLFFHRKSEEDDWISVYKV-ILPQTGLVSTESVSIQRVTPPGLHAFT 324
GGWP W E T+FFHR + +D W SV++V I P+T S + RVTPPG+H FT
Sbjct: 198 AARGGWPTWHGEGTVFFHRVA-DDGWWSVFRVDISPET---LEPSGAETRVTPPGVHCFT 253
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRV 384
PA + ++IAVATRR + RHIELFDL +F +T ++P+ HH NPF SP R+
Sbjct: 254 PAAAGRGCRWIAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHYNPFFSPSGGRL 313
Query: 385 GYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEFPG 440
GYH+ RG + D + L+ ++SP+ I + R GSFPSFSP A F + PG
Sbjct: 314 GYHRFRGAGVQGD-SMIPYLQPVRSPVSSIRMLRVHGSFPSFSPDAKHFALNGDFFKSPG 372
Query: 441 VYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD---- 495
V ++ +DGS R + + N F T W P VV+TS GP F + + V + I D
Sbjct: 373 VTILRADGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSGL 432
Query: 496 -----DVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
DVD AV+ LT N+AFP+VSP G+W+VFRS R+G+KNLYI+DA GE
Sbjct: 433 TDDRGDVD--VAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGE-ET 489
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGTGLRKLIQSGSAG 608
+ R+T+G W DTM +WSPDGE IAF+S+R P + + F +YL+ P+GTGLR++ +G AG
Sbjct: 490 IRRVTDGEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAG 549
Query: 609 -------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
R NH FSPDG+ ++FT+ GG+ AEPIS P+Q+QPYG+++ +LDGS + RL
Sbjct: 550 SAEADKERINHVCFSPDGQWLLFTATLGGVMAEPISGPNQFQPYGDLYVCRLDGSGVLRL 609
Query: 662 TQNSFEDGTPAWGP 675
T N++E+GTP WGP
Sbjct: 610 TCNAYENGTPTWGP 623
>gi|414887818|tpg|DAA63832.1| TPA: putative WD40-like beta propeller repeat family protein [Zea
mays]
Length = 667
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 274/686 (39%), Positives = 383/686 (55%), Gaps = 99/686 (14%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTA---------NEIKITDGESVNFNGHFPSPSSP 81
+I+F ++G +++ FD+++ + PT+A +E + TDG SVNFN F
Sbjct: 6 TIVFASVGVTNFGFDVFSATVP-APTSAEAGVSAEDLDERRHTDGISVNFNAQFA----- 59
Query: 82 FLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE 141
D+ D + +V+ER G ++++ L
Sbjct: 60 -----------------DDAGD----AVAFVSERTGAASLF-----------------LS 81
Query: 142 QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYST 201
+ G+E L G + D+P + G + +VS HE P P SWAAVY+
Sbjct: 82 RPGSEPDP--------LPAAEGSL--FHDRPTVRGGRVYFVSAHEKPDRPFRSWAAVYAA 131
Query: 202 ELKTGLTR-------RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF 254
EL G R RLTP GV D SPAVS SG AVASYG++ W + L T++ +F
Sbjct: 132 ELGAGRERNPEPQPQRLTPRGVVDMSPAVSASGDLLAVASYGDRPWAFDFRALETEVAVF 191
Query: 255 LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR 314
D ++R + GGWP W ++ LFFHR ++ D W SV++V + L T +R
Sbjct: 192 RASDPSRRAVVAARGGWPAWHGDAALFFHRAAD-DGWWSVFRVGVSPDTLQPTGPE--RR 248
Query: 315 VTPPGLHAFTPAT-SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
VTPPGLH FTPA + G ++IAVATRR + RH+ELFDL +F LT +SP HH
Sbjct: 249 VTPPGLHCFTPAAPARGGGRWIAVATRRKGRAQRHVELFDLETQRFSPLTELLSPGLHHY 308
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
NPF +P RVGYH+ RG D + L+ ++SP+ I + R G+FPSFSP G I
Sbjct: 309 NPFFTPSGGRVGYHRFRGAGAPGD-SLVPHLQPVRSPVRSIRMLRVHGTFPSFSPDGAHI 367
Query: 434 A----FVEFPGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
A F PGV V+ SDGS R V + + F T W P VV+TS GP F + + V
Sbjct: 368 AVNGDFFSTPGVSVLRSDGSRRWTVSKEPDLFYTTWSPTERGVVFTSKGPIFETPKATVR 427
Query: 489 IISINVDDVDGV----------SAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
I + D D + VR LT N+AFP+VSP G+W+VFRS RTG+KNL
Sbjct: 428 IARVEFDPADLTDDGRGEGEVRATVRPLTRPEAGNDAFPAVSPCGRWLVFRSGRTGHKNL 487
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGT 596
Y++D GE G+ RLTEG W DTM +WSPDG IAF+S+R +P + + F +YL+ P+G+
Sbjct: 488 YVVDTARGEEGGVRRLTEGEWIDTMPSWSPDGSLIAFSSNRHDPANPAVFSIYLVRPDGS 547
Query: 597 GLRKLIQSGSAG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
GLR++ +G+ G R NH FSPD + ++FT++ G + AEPIS P+Q+QPYG+++
Sbjct: 548 GLRRVYVAGAEGSAEADKERINHVCFSPDSQWLLFTANLGSVVAEPISGPNQFQPYGDLY 607
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+LDGSDL+RLT N++E+GTP WGP
Sbjct: 608 VCRLDGSDLRRLTCNAYENGTPVWGP 633
>gi|115473615|ref|NP_001060406.1| Os07g0638100 [Oryza sativa Japonica Group]
gi|27261082|dbj|BAC45195.1| unknown protein [Oryza sativa Japonica Group]
gi|113611942|dbj|BAF22320.1| Os07g0638100 [Oryza sativa Japonica Group]
Length = 659
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 272/674 (40%), Positives = 386/674 (57%), Gaps = 84/674 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN-EIKITDGESVNFNGHFPSPSSPFLSFLLRN 89
+I+F T+G +++ FD+++ + P + E + TDG SVNFN F
Sbjct: 6 TIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQF-------------- 51
Query: 90 QTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVST 149
D ++ +V+ER G + ++ R R EQ + T
Sbjct: 52 ------------VDDGGEEVAFVSERGGAAGLF------------RCRPGPEQRAEPLPT 87
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR 209
V G + D+P + G L +VS HE P P SWAAVY+TE+ + T
Sbjct: 88 -----------VEGSL--FHDRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETV 134
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
R++P GV D SPAVS SG+ AVASYG++ W + +L T++ +F D +RV +V G
Sbjct: 135 RVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFRAADPARRVVVVGRG 194
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT-- 327
GWP W E T+FFHR + +D W SV++V + L T +RVTPPGLH FTPA
Sbjct: 195 GWPTWHGEGTVFFHRVA-DDGWWSVFRVDVSPETLEPTGGE--RRVTPPGLHCFTPAAVG 251
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
G ++IAVATRR + RH+ELFDL F LT ++P+ HH NPF SP RVGYH
Sbjct: 252 RGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPFFSPSGDRVGYH 311
Query: 388 KCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEFPGVYV 443
+ RG R D + L+ ++SP+ + + R G+FPSFSP +A F + PGV +
Sbjct: 312 RFRGAGARGD-SVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTI 370
Query: 444 VNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD------D 496
+ SDG+ R + + N F T W P V++TS GP F + + V I + D
Sbjct: 371 LRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARLEFDAGELTTG 430
Query: 497 VDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG----- 549
D V+A ++ T N+AFP+VSP GKW+VFRS R+G+KNLYI+DA GE G
Sbjct: 431 RDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGT 490
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGTGLRKLIQSGSAG 608
+ RLT+G W DTM +WSPDG IAF+S+R +P + + F +YL+ P+G+GLR++ +G AG
Sbjct: 491 IRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPDGSGLRRVHVAGPAG 550
Query: 609 -------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
R NH FSPD + ++FT+++GG+ AEPIS P+Q+QPYG+++ +LDGS L RL
Sbjct: 551 SAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRL 610
Query: 662 TQNSFEDGTPAWGP 675
T N++E+GTPAWGP
Sbjct: 611 TCNAYENGTPAWGP 624
>gi|357121777|ref|XP_003562594.1| PREDICTED: uncharacterized protein LOC100822199 [Brachypodium
distachyon]
Length = 674
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 274/688 (39%), Positives = 389/688 (56%), Gaps = 93/688 (13%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRP--TTANEIK---ITDGESVNFNGHFPSPSS 80
S +I F ++G + + FD++++ + P TTA E+ TDG SVNFN F
Sbjct: 7 SQPTGTIAFASVGVTSFGFDVFSVAVPQSPETTTAEELAERCHTDGVSVNFNAQF----- 61
Query: 81 PFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTAL 140
D ++ +V+ER G++ ++ R R+
Sbjct: 62 ------------------TDDEAGEEEEVAFVSERTGSAALFL------CRPGGRA---- 93
Query: 141 EQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENP-GTPRTSWAAVY 199
PL + E D+P L L +VS HE P G P SWAA+Y
Sbjct: 94 ------------TPLPAVEES-----LFHDRPTLRRGRLYFVSAHEKPPGAPFRSWAALY 136
Query: 200 STELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVE-MLSTDIYIFLTRD 258
+T+L++ T R+TP GV D SPAVSPSG+ AVASYG++ W E L TD+ +F +
Sbjct: 137 ATDLESQETSRVTPEGVVDMSPAVSPSGELVAVASYGDRPWAFEFRGALDTDVAVFRAAE 196
Query: 259 GTQRVKI--VENGGWPCWVDESTLFFHRKSEEDDWISVYKVIL-PQTGLVSTESVSIQRV 315
+RV + GWP W ES + F+R + D W SV++V L P+T +S + RV
Sbjct: 197 PARRVVVSAARGAGWPAWHGESAVLFNRVAP-DGWWSVFRVDLDPET--LSPSPAAETRV 253
Query: 316 TPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
TPPG+H FTP S NN ++IAVATRR S+R IELFDL ++F +T F++PK HH N
Sbjct: 254 TPPGVHCFTPTASGNNNHRWIAVATRRKGHSHRQIELFDLDTSQFTPITTFLNPKIHHYN 313
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
PF SP +R+GYH+ RG G +++ L +++P+ + + R GSFPSFSP +
Sbjct: 314 PFFSPSGNRLGYHRFRGHGA--PGESKIPYLNPVRTPVSSLRMLRVHGSFPSFSPDAKHL 371
Query: 434 A----FVEFPGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
A F + PGV V+ SDGS R V + F T W P VV+TS GP F S + V
Sbjct: 372 ALNGDFFKSPGVTVLKSDGSRRWVVADQPGLFYTSWSPTEPGVVFTSMGPIFESPKATVR 431
Query: 489 IISINVDDV-------DGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
I + D D V ++ T N+AFP+VSP G+W+VFRS R+G+KNLYI
Sbjct: 432 IARVEFDPAQLRDNNNDKVDVALKVLTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYI 491
Query: 540 MDAEGGEG----YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPN 594
+DA GE + RLT+G W DTM W+PDG+ +AF+S+R +PG+ + F +YL+ P+
Sbjct: 492 IDAAHGENEPATAPIQRLTDGEWIDTMPCWAPDGKLVAFSSNRHDPGNAAVFSIYLVRPD 551
Query: 595 GTGLRKLIQSGSAG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
GTGLR++ +G G R NH FSPDG+ ++FT++ GG++AEP+S P+Q+QPYG+
Sbjct: 552 GTGLRRVHVAGPPGSEEADKERINHVCFSPDGEWLLFTANLGGVNAEPVSGPNQFQPYGD 611
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ +LDGS L RLT N++E+GTPAWGP
Sbjct: 612 LYVCRLDGSGLVRLTCNAYENGTPAWGP 639
>gi|15234357|ref|NP_192096.1| tolB-related protein [Arabidopsis thaliana]
gi|4558556|gb|AAD22649.1|AC007138_13 predicted protein of unknown function [Arabidopsis thaliana]
gi|7268571|emb|CAB80680.1| predicted protein of unknown function [Arabidopsis thaliana]
gi|29824389|gb|AAP04154.1| unknown protein [Arabidopsis thaliana]
gi|110742479|dbj|BAE99158.1| hypothetical protein [Arabidopsis thaliana]
gi|332656688|gb|AEE82088.1| tolB-related protein [Arabidopsis thaliana]
Length = 652
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 279/674 (41%), Positives = 386/674 (57%), Gaps = 90/674 (13%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
+ +IIFTT+GR+ Y FD+++L I+ T+ E ++TDG SVNFN F + S
Sbjct: 5 KGTIIFTTVGRTHYGFDVFSLNIA----TSVERRLTDGVSVNFNAQFVNDKSD------- 53
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
+++V+ERNG++ IY TRS +S
Sbjct: 54 -------------------DVVFVSERNGSARIY----------KTRS---------GIS 75
Query: 149 TRVQVPLLDLNEVNGGVIS-MKDKPILS-GEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
Q+P G S D+PI++ L ++S HE P +W+A+Y+ EL +
Sbjct: 76 KPEQIP--------GAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSALYTVELNSA 127
Query: 207 LTR--RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK 264
R+TP ADFSPAVS SG + AVASYG + W GE ++TDI +F RV
Sbjct: 128 KREVTRVTPPDTADFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFKASKPETRVV 187
Query: 265 IVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAF 323
I E GGWP W +ST+FFH ++ +D W S+++V +P+ T+ ++ RVTP GLH F
Sbjct: 188 ICERGGWPTWSGDSTVFFHHQA-DDGWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCF 246
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSR 383
TPA + K IA+ATRR ++RHIE++DL F +T ++P HH NPF+SPDS
Sbjct: 247 TPAAF-RDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSEF 305
Query: 384 VGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEF 438
+GYH+ RG ST+ G + + +E+I SP+ + L R +GSFPS SP GD IA F
Sbjct: 306 LGYHRFRGESTQ--GESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDIN 363
Query: 439 PGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
G+ V SDGS R + + AF W P V+YTS GP F+ V I I D
Sbjct: 364 GGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARIKFDPS 423
Query: 498 DGVS-------AVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE--G 547
D + V+ LT N NNAFPS SPDGK IVFRS R+G+KNLYI+DA GE G
Sbjct: 424 DLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNG 483
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGS 606
G+ RLT+GPW DTM WSP G+ I F+S+R NP + F Y++ P+GTGLR++ SG
Sbjct: 484 GGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLRRIQISGP 543
Query: 607 AG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
G R NH F+ DG +VF ++ G++AEP++ P+Q+QPYG+++ +KLDG+ L+
Sbjct: 544 EGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVKLDGTGLR 603
Query: 660 RLTQNSFEDGTPAW 673
RLT N +EDGTP W
Sbjct: 604 RLTWNGYEDGTPTW 617
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 173/455 (38%), Gaps = 92/455 (20%)
Query: 272 PCWVDESTLFFHRKSEEDD-----WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
P + L+F E+ D W ++Y V L ++ + RVTPP F+PA
Sbjct: 92 PIITQNNRLYFISAHEQPDRYFKNWSALYTVEL------NSAKREVTRVTPPDTADFSPA 145
Query: 327 TSPGNNKFIAVA---TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN------PFI 377
S + F+AVA TR + I N I + + P+T + P
Sbjct: 146 VSQSGD-FLAVASYGTRSWGGEFHEI-------NTDITVFKASKPETRVVICERGGWPTW 197
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD------GSFPSFSPK-- 429
S DS+ +H+ +DG + +I + + F F+P
Sbjct: 198 SGDSTVFFHHQA------DDGWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCFTPAAF 251
Query: 430 --GDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV--------YTS---- 475
G RIA G N R + + +T + PV E++ + S
Sbjct: 252 RDGKRIALA-------TRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSE 304
Query: 476 --GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
G F ES++ + I N++ + VS ++ L N +FPS SP+G I S
Sbjct: 305 FLGYHRFRGESTQGESIVPNIESI--VSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDI 362
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD--NPGSGSFEMYLI 591
+ + ++G + + L + ++ +WSP + + S +P + ++ I
Sbjct: 363 NGGIKVSKSDGSKRWTLIKDRTAFYN----SWSPTERHVIYTSLGPIFSPARIAVQIARI 418
Query: 592 HPNGTGLR----------KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
+ + L K++ + G P SPDGKSIVF S G H+
Sbjct: 419 KFDPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSG---------HK 469
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ + +G ++RLT + D P W P+
Sbjct: 470 NLYIVDAVNGESNGGGIRRLTDGPWIDTMPCWSPK 504
>gi|297809975|ref|XP_002872871.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp.
lyrata]
gi|297318708|gb|EFH49130.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 279/675 (41%), Positives = 387/675 (57%), Gaps = 92/675 (13%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
+ +IIFTT+GR+ Y FD+++L I+ TA E ++TDG SVNFN F + S
Sbjct: 5 KGTIIFTTVGRTHYGFDVFSLHIA----TAVERRLTDGVSVNFNAQFVNDKSD------- 53
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
+++V+ERNG++ IY ++R +S
Sbjct: 54 -------------------DVVFVSERNGSARIY------------KTRPG-------IS 75
Query: 149 TRVQVPLLDLNEVNGGVIS-MKDKPILS-GEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
Q+P G S D+PI++ L ++S HE P +W+A+Y+ EL G
Sbjct: 76 EPEQLP--------GAPESYFHDRPIITQSNRLYFISAHEQPDRHFKNWSALYTVELN-G 126
Query: 207 LTR---RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
R R+TP ADFSPAVS SG + AVASYG++ W GE ++TDI +F + RV
Sbjct: 127 EEREVTRVTPLDTADFSPAVSQSGDFLAVASYGSRSWGGEFHEINTDITVFKASEPETRV 186
Query: 264 KIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT-GLVSTESVSIQRVTPPGLHA 322
I E GGWP W +ST+FFH ++ +D W S+++V +P+ S ++ RVTP GLH
Sbjct: 187 VICERGGWPTWSGDSTVFFHHQA-DDGWWSIFRVDIPENFKKYSDFPITPIRVTPSGLHC 245
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
FTPA + K IAVATRR ++RHIE++DL F +T ++P HH NPF+S +S
Sbjct: 246 FTPAAF-HDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFVSSNSE 304
Query: 383 RVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVE 437
+GYH+ RG ST+ G + + +E+I SP+ + L R +GSFPS SP GD IA F
Sbjct: 305 FLGYHRFRGESTQ--GESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDI 362
Query: 438 FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496
G+ V SDGS R + + AF W P V+YTS GP F V I I D
Sbjct: 363 NGGIKVAKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFRPAGIAVQIARIKFDP 422
Query: 497 VDGVSAVRRLTTNGK--------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-- 546
D + L + K NNAFPS SPDGK IVFRS R+G+KNLYI+DA GE
Sbjct: 423 SDLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESN 482
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKLIQSG 605
G G+ RLTEGPW DTM WSP G+ I F+S+R NP + +F Y++ P+G+GLR+++ SG
Sbjct: 483 GGGIRRLTEGPWIDTMPCWSPKGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLRRILISG 542
Query: 606 SAG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
G R NH F+ DG +VFT++ GI+AEP++ P+Q+QPYG+++ +KLDG+ L
Sbjct: 543 PEGSEEAARERVNHVSFNKDGDWLVFTANLCGITAEPVAMPNQFQPYGDLYVVKLDGTGL 602
Query: 659 KRLTQNSFEDGTPAW 673
+RLT N +EDGTP W
Sbjct: 603 RRLTWNGYEDGTPTW 617
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 170/454 (37%), Gaps = 90/454 (19%)
Query: 272 PCWVDESTLFFHRKSEEDD-----WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
P + L+F E+ D W ++Y V L + E + RVTP F+PA
Sbjct: 92 PIITQSNRLYFISAHEQPDRHFKNWSALYTVEL------NGEEREVTRVTPLDTADFSPA 145
Query: 327 TSPGNNKFIAVAT---RRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN------PFI 377
S + F+AVA+ R + I N I + + P+T + P
Sbjct: 146 VSQSGD-FLAVASYGSRSWGGEFHEI-------NTDITVFKASEPETRVVICERGGWPTW 197
Query: 378 SPDSSRVGYHKCRGG---STREDGNNQLLLENIK--SPLPDISLFRFDGSFPSFSPK--- 429
S DS+ +H+ G R D + EN K S P + F+P
Sbjct: 198 SGDSTVFFHHQADDGWWSIFRVD-----IPENFKKYSDFPITPIRVTPSGLHCFTPAAFH 252
Query: 430 -GDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV--------YTSGGPEF 480
G RIA G N R + + + PV E + + S EF
Sbjct: 253 DGKRIAVA-------TRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFVSSNSEF 305
Query: 481 AS------ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
ES++ + I N++ + VS ++ L N +FPS SP+G I S
Sbjct: 306 LGYHRFRGESTQGESIVPNIESI--VSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDIN 363
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD--NPGSGSFEMYLIH 592
+ + ++G + + L + ++ +WSP + + S P + ++ I
Sbjct: 364 GGIKVAKSDGSKRWTLIKDRTAFYN----SWSPTERHVIYTSLGPIFRPAGIAVQIARIK 419
Query: 593 PNGTGLR----------KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
+ + L K++ + G P SPDGKSIVF S G H+
Sbjct: 420 FDPSDLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSG---------HKN 470
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ + +G ++RLT+ + D P W P+
Sbjct: 471 LYIVDAVNGESNGGGIRRLTEGPWIDTMPCWSPK 504
>gi|20259480|gb|AAM13860.1| unknown protein [Arabidopsis thaliana]
Length = 657
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/674 (41%), Positives = 385/674 (57%), Gaps = 90/674 (13%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
+ +IIFTT+GR+ Y FD+++L I+ T+ E ++TDG SVNFN F + S
Sbjct: 10 KGTIIFTTVGRTHYGFDVFSLNIA----TSVERRLTDGVSVNFNAQFVNDKSD------- 58
Query: 89 NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
+++V+ERNG++ IY TRS +S
Sbjct: 59 -------------------DVVFVSERNGSARIY----------KTRS---------GIS 80
Query: 149 TRVQVPLLDLNEVNGGVIS-MKDKPILS-GEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
Q+P G S D+PI++ L ++S HE P +W+A+Y+ EL +
Sbjct: 81 KPEQIP--------GAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSALYTVELNSA 132
Query: 207 LTR--RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK 264
R+TP DFSPAVS SG + AVASYG + W GE ++TDI +F RV
Sbjct: 133 KREVTRVTPPDTTDFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFKASKPETRVV 192
Query: 265 IVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAF 323
I E GGWP W +ST+FFH ++ +D W S+++V +P+ T+ ++ RVTP GLH F
Sbjct: 193 ICERGGWPTWSGDSTVFFHHQA-DDGWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCF 251
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSR 383
TPA + K IA+ATRR ++RHIE++DL F +T ++P HH NPF+SPDS
Sbjct: 252 TPAAF-RDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSEF 310
Query: 384 VGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEF 438
+GYH+ RG ST+ G + + +E+I SP+ + L R +GSFPS SP GD IA F
Sbjct: 311 LGYHRFRGESTQ--GESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDIN 368
Query: 439 PGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
G+ V SDGS R + + AF W P V+YTS GP F+ V I I D
Sbjct: 369 GGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARIKFDPS 428
Query: 498 DGVS-------AVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE--G 547
D + V+ LT N NNAFPS SPDGK IVFRS R+G+KNLYI+DA GE G
Sbjct: 429 DLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNG 488
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGS 606
G+ RLT+GPW DTM WSP G+ I F+S+R NP + F Y++ P+GTGLR++ SG
Sbjct: 489 GGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLRRIQISGP 548
Query: 607 AG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
G R NH F+ DG +VF ++ G++AEP++ P+Q+QPYG+++ +KLDG+ L+
Sbjct: 549 EGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVKLDGTGLR 608
Query: 660 RLTQNSFEDGTPAW 673
RLT N +EDGTP W
Sbjct: 609 RLTWNGYEDGTPTW 622
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 173/455 (38%), Gaps = 92/455 (20%)
Query: 272 PCWVDESTLFFHRKSEEDD-----WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
P + L+F E+ D W ++Y V L ++ + RVTPP F+PA
Sbjct: 97 PIITQNNRLYFISAHEQPDRYFKNWSALYTVEL------NSAKREVTRVTPPDTTDFSPA 150
Query: 327 TSPGNNKFIAVA---TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN------PFI 377
S + F+AVA TR + I N I + + P+T + P
Sbjct: 151 VSQSGD-FLAVASYGTRSWGGEFHEI-------NTDITVFKASKPETRVVICERGGWPTW 202
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD------GSFPSFSPK-- 429
S DS+ +H+ +DG + +I + + F F+P
Sbjct: 203 SGDSTVFFHHQA------DDGWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCFTPAAF 256
Query: 430 --GDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV--------YTS---- 475
G RIA G N R + + +T + PV E++ + S
Sbjct: 257 RDGKRIALA-------TRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSE 309
Query: 476 --GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
G F ES++ + I N++ + VS ++ L N +FPS SP+G I S
Sbjct: 310 FLGYHRFRGESTQGESIVPNIESI--VSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDI 367
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD--NPGSGSFEMYLI 591
+ + ++G + + L + ++ +WSP + + S +P + ++ I
Sbjct: 368 NGGIKVSKSDGSKRWTLIKDRTAFYN----SWSPTERHVIYTSLGPIFSPARIAVQIARI 423
Query: 592 HPNGTGLR----------KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
+ + L K++ + G P SPDGKSIVF S G H+
Sbjct: 424 KFDPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSG---------HK 474
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ + +G ++RLT + D P W P+
Sbjct: 475 NLYIVDAVNGESNGGGIRRLTDGPWIDTMPCWSPK 509
>gi|358347274|ref|XP_003637684.1| Protein tolB [Medicago truncatula]
gi|355503619|gb|AES84822.1| Protein tolB [Medicago truncatula]
Length = 657
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 277/673 (41%), Positives = 384/673 (57%), Gaps = 85/673 (12%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSF 85
SS +I+F+T+GR+ Y FD++ + + + ++ +TDG S+NFN F
Sbjct: 2 SSPIGTIVFSTIGRAQYGFDVFYTNLKNH--SNHDHCLTDGISINFNAQFT--------- 50
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
D +++V+ER G+ Y L + G
Sbjct: 51 -----------------DDDQKTIVFVSERTGSPRFY-----------------LSKLGN 76
Query: 146 EVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT 205
E P L + +N + D+P + L +VSTHE P SW AVYST + +
Sbjct: 77 E-------PELLPSPLNAVFL---DRPTIRNGKLYFVSTHEQPNELFKSWTAVYSTAINS 126
Query: 206 GLTR---RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR 262
T RLTPYGV D+SPAVS +G AVASYG + W+GE+ L T+I +F R
Sbjct: 127 AGTSTFTRLTPYGVVDYSPAVSLTGSLIAVASYGTRRWNGEIRELETEIVVFEESVPENR 186
Query: 263 VKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHA 322
V + E GGWP W+ +STLFFH K ED W S++++ LP T L S+ RVTPPGLH
Sbjct: 187 VVVSERGGWPTWLGDSTLFFH-KIAEDGWWSIFRIDLPDTNLNGFPVPSV-RVTPPGLHC 244
Query: 323 FTP-ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
FTP A GN+ IA+ATRR S +RHIE+F+L F ++T ++P HH NPFIS DS
Sbjct: 245 FTPVAMHDGNH--IALATRRRESDFRHIEIFNLETQTFQKITETINPNFHHYNPFISRDS 302
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE---- 437
+GYH+ RG S++ + + L+ +KS P+I L R +GSFPSFSP GD IAF
Sbjct: 303 CYLGYHRFRGESSQGE-STYPHLDPVKSLDPNIQLLRLNGSFPSFSPNGDFIAFNHGFDV 361
Query: 438 --FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494
GV ++ S+GS R + + F W + ++YT+ GP F S V I I
Sbjct: 362 RNNSGVKIIKSNGSKRWNLIKGRMCFGHAWSATEKNIIYTTIGPIFQLVSKTVQIARIEF 421
Query: 495 DDVDGVS-------AVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
D V + ++ LT + NNAFPS SPDGK++VFRS R+G+KNLYI+DA GE
Sbjct: 422 DSVHLTNDQEEIPYTLKILTKDDSGNNAFPSCSPDGKFVVFRSGRSGFKNLYIVDAVNGE 481
Query: 547 -GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG-SGSFEMYLIHPNGTGLRKL-IQ 603
GL RLTEG W DTM WSP G+ IAF+S+R + G S +F +Y++ +G+GLR++ +
Sbjct: 482 FDGGLRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDGGNSQAFGIYVVRVDGSGLRRVEVG 541
Query: 604 SGSAGR---ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
G G NH FS DG+ ++FT + G++AEP S P+QYQPYG++F +KLDGS L+R
Sbjct: 542 KGVDGEREMLNHVRFSGDGEWLLFTGNLVGLTAEPASIPNQYQPYGDLFVVKLDGSGLRR 601
Query: 661 LTQNSFEDGTPAW 673
LT N++E+GTPAW
Sbjct: 602 LTCNAYENGTPAW 614
>gi|242046452|ref|XP_002461097.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor]
gi|241924474|gb|EER97618.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor]
Length = 669
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 269/686 (39%), Positives = 380/686 (55%), Gaps = 97/686 (14%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTA-------------NEIKITDGESVNFNGHFPS 77
+I+F ++G +++ FD++++ + PT A +E + TDG SVNFN F
Sbjct: 6 TIVFASVGVTNFGFDVFSVAV---PTPASAEAEAGVSAQELDERRHTDGVSVNFNAQFA- 61
Query: 78 PSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSR 137
D+ D + +V+ER G ++++
Sbjct: 62 ---------------------DDAGD----AVAFVSERTGAASLF--------------- 81
Query: 138 TALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAA 197
L + S R + L G + D+P + G + +VS HE P SWAA
Sbjct: 82 --LSRPPGSESDRPE----PLPAAEGSL--FHDRPTVRGGRVYFVSAHEKPDRTFQSWAA 133
Query: 198 VYSTEL--KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL 255
VY+ + + RLTP GV D SPAVS SG AVASYG++ W + +L T++ +F
Sbjct: 134 VYAARVGERKAEPERLTPRGVVDMSPAVSASGDLIAVASYGDRPWAFDFRVLETEVAVFR 193
Query: 256 TRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV 315
D ++R + GGWP W +S LFFHR ++ D W SV++V + L T +RV
Sbjct: 194 AADPSRRAVVAPRGGWPAWHGDSALFFHRVAD-DGWWSVFRVGVSPDTLQPTGPE--RRV 250
Query: 316 TPPGLHAFTPATSPGNN--KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
TPPGLH FTPA ++IAVATRR + RH+ELFDL +F LT ++P HH
Sbjct: 251 TPPGLHCFTPAAPAAAGGGRWIAVATRRKGRAQRHVELFDLEMERFSPLTELLNPGLHHY 310
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
NPF SP +R+GYH+ RG D L + ++SP+P I + R G+FPSFSP +
Sbjct: 311 NPFFSPSGARLGYHRFRGAGAPGDALVPHL-QPVRSPVPSIRMLRVYGTFPSFSPDAAHL 369
Query: 434 A----FVEFPGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
A F PG+ V+ SDGS R V + N F T W P VV+TS GP F + + V
Sbjct: 370 AVNGDFFMTPGIRVLRSDGSKRWTVSKEPNLFYTTWSPTEPGVVFTSMGPIFETTKATVR 429
Query: 489 IISINVDDVD----------GVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
I + D D GV+ VR LT N+AFP+VSP G+W+VFRS RTG+KNL
Sbjct: 430 IARVEFDPADLTDDDSRVEVGVATVRPLTRPEAGNDAFPAVSPCGRWLVFRSGRTGHKNL 489
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGT 596
Y++D GE G+ RLTEG W DTM +WSPDG IAF+S+R +P + + F +YL+ P+G+
Sbjct: 490 YVVDTARGEDGGVLRLTEGEWIDTMPSWSPDGSLIAFSSNRHDPANPAVFSIYLVRPDGS 549
Query: 597 GLRKLIQSGSAG-------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
GLR++ +G G R NH FSPD + ++FT++ G + AEPIS P+Q+QPYG+++
Sbjct: 550 GLRRVYVAGPEGSAEADKERINHVCFSPDSQWLLFTANLGSVVAEPISGPNQFQPYGDLY 609
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+LDGS L+RLT N++E+GTPAWGP
Sbjct: 610 VCRLDGSGLRRLTCNAYENGTPAWGP 635
>gi|356521141|ref|XP_003529216.1| PREDICTED: uncharacterized protein LOC100814036 [Glycine max]
Length = 656
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 382/670 (57%), Gaps = 85/670 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDR---PTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
+I+F T+GR Y FD++++ ++ + P + ++TDG S+NFN F +P +
Sbjct: 7 TIVFNTVGRVQYGFDVFSVDLNHQQPPPHATADHRLTDGVSINFNAQFINPQN------- 59
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
+++V+ER G+ +Y T+ +T+ +
Sbjct: 60 --------------------DVVFVSERTGSPR------FYITKPDTKPQP--------- 84
Query: 148 STRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL--KT 205
+P L N + D+PI+ L +VSTHE TSW+AVYST + T
Sbjct: 85 -----LPFLP-NAL------FHDRPIVKNGKLYFVSTHEENDAVFTSWSAVYSTAIDDST 132
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWD-GEVEMLSTDIYIFLTRDGTQRVK 264
+RLTP G D+SPAVS +GK+ VASY ++ W + L T+I +F D RV
Sbjct: 133 ATVKRLTPRGEVDYSPAVSLTGKFLGVASYRSRRWQTNDFRELQTEIVVFPESDPKNRVT 192
Query: 265 IVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT 324
+ E GGWP W +ST+FFHR +E D W S+++V L + L + + I RVTPPGLH FT
Sbjct: 193 VSERGGWPSWSQDSTIFFHRIAE-DGWWSIFRVDLTDSELSESRNSPI-RVTPPGLHCFT 250
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRV 384
PA + K +AVATRR S+ RH+E+FDL F +T ++P +H NPF+S DS +
Sbjct: 251 PAAF-HDGKRVAVATRRRESNLRHVEIFDLESQTFQRITEDINPNFNHYNPFVSLDSRHL 309
Query: 385 GYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------F 438
GYH+ RG S + + L + + SP+ D+ L R +GSFP+FSP GD IAF
Sbjct: 310 GYHRFRGESIQGEPIYPHL-DKVLSPVRDLQLLRLNGSFPTFSPDGDFIAFNHGLDGNVN 368
Query: 439 PGVYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
GV +V S+GS R + + F W P + V+YTS GP F S V I I D V
Sbjct: 369 GGVKIVKSNGSKRWTLLKGRTCFHNAWSPTEKNVIYTSVGPIFESVYKTVQIARIEFDPV 428
Query: 498 ----DGVSAVRRLTT----NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-GY 548
D +LT + NNAFPS SPDGK IVFRS R GYKNLYI+DA GE
Sbjct: 429 HLTNDREEVPFKLTILTREDTGNNAFPSCSPDGKSIVFRSGREGYKNLYIVDAVKGEFDG 488
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKL-IQSGS 606
G+ RLTEG W DTM WSP G+ IAF+S+R +P S F +YL+ PNG+GLR++ + G
Sbjct: 489 GIRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDPKNSEVFGIYLVGPNGSGLRRVEVAKGV 548
Query: 607 AG---RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
G R NH FS DG+ ++FT++ GG+SAEP+ P+Q+QPYG+++ ++LDGS L+RLT
Sbjct: 549 EGMKERLNHVCFSRDGEWLLFTANLGGVSAEPVGLPNQFQPYGDLYVVRLDGSGLRRLTC 608
Query: 664 NSFEDGTPAW 673
N++E+GTP W
Sbjct: 609 NAYENGTPTW 618
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 164/442 (37%), Gaps = 72/442 (16%)
Query: 275 VDESTLFFHRKSEEDD-----WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP 329
V L+F EE+D W +VY + + +++R+TP G ++PA S
Sbjct: 99 VKNGKLYFVSTHEENDAVFTSWSAVYSTA------IDDSTATVKRLTPRGEVDYSPAVSL 152
Query: 330 GNNKFIAVATRR----PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385
KF+ VA+ R T+ +R ++ +V + R V+ P S DS+
Sbjct: 153 -TGKFLGVASYRSRRWQTNDFRELQTEIVVFPESDPKNR-VTVSERGGWPSWSQDSTIFF 210
Query: 386 YHKCRGG---STREDGNNQLLLENIKSPL----PDISLFRFDGSFPSFSPKGDRIAFVEF 438
+ G R D + L E+ SP+ P + F P+ G R+A
Sbjct: 211 HRIAEDGWWSIFRVDLTDSELSESRNSPIRVTPPGLHCFT-----PAAFHDGKRVAVA-- 263
Query: 439 PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV--------VYTS------GGPEFASES 484
SN R V + S + + E + + S G F ES
Sbjct: 264 -----TRRRESNLRHVEIFDLESQTFQRITEDINPNFNHYNPFVSLDSRHLGYHRFRGES 318
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDA 542
+ + I ++D V +S VR L N +FP+ SPDG +I F G N + I+ +
Sbjct: 319 IQGEPIYPHLDKV--LSPVRDLQLLRLNGSFPTFSPDGDFIAFNHGLDGNVNGGVKIVKS 376
Query: 543 EGGEGYGLHR---LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
G + + L + WS T N F S E +H
Sbjct: 377 NGSKRWTLLKGRTCFHNAWSPTEKNVIYTSVGPIFESVYKTVQIARIEFDPVHLTNDREE 436
Query: 600 -----KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
++ G P SPDGKSIVF S G I + K + D
Sbjct: 437 VPFKLTILTREDTGNNAFPSCSPDGKSIVFRSGREGYKNLYIV---------DAVKGEFD 487
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
G ++RLT+ + D P W P+
Sbjct: 488 GG-IRRLTEGEWIDTMPCWSPK 508
>gi|125559315|gb|EAZ04851.1| hypothetical protein OsI_27029 [Oryza sativa Indica Group]
Length = 659
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 270/674 (40%), Positives = 384/674 (56%), Gaps = 84/674 (12%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN-EIKITDGESVNFNGHFPSPSSPFLSFLLRN 89
+I+F T+G +++ FD+++ + P + E + TDG SVNFN F
Sbjct: 6 TIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQF-------------- 51
Query: 90 QTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVST 149
D ++ +V+ER G + ++ R R EQ + T
Sbjct: 52 ------------VDDGGEEVAFVSERGGAAGLF------------RCRPGPEQRAEPLPT 87
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR 209
V G + D+P + G L +VS HE P P SWAAVY+TE+ + T
Sbjct: 88 -----------VEGSL--FHDRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETV 134
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
R++P GV D SPAVS SG+ AVASYG++ W + +L T++ +F D +RV +V G
Sbjct: 135 RVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFRAADPARRVVVVGRG 194
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP--AT 327
GWP W E T+FFHR + +D W SV++V + L T +RVTPPGLH FTP
Sbjct: 195 GWPTWHGEGTVFFHRVA-DDGWWSVFRVDVSPETLEPTGGE--RRVTPPGLHCFTPAAVG 251
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
G ++IA ATRR + RH+ELFDL F LT ++P+ HH NPF SP RVGYH
Sbjct: 252 RGGGGRWIAGATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPFFSPSGDRVGYH 311
Query: 388 KCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEFPGVYV 443
+ RG R D + L+ ++SP+ + + R G+FPSFSP +A F + PGV +
Sbjct: 312 RFRGAGARGD-SVVPYLQPVRSPVSSLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTI 370
Query: 444 VNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD------D 496
+ SDG+ R + + N F T W P V++TS GP F + + V I + D
Sbjct: 371 LRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARLEFDAGELTTG 430
Query: 497 VDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG----- 549
D V+A ++ T N+AFP+VSP GKW+VFRS R+G+KNLYI+DA GE G
Sbjct: 431 RDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGT 490
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS-FEMYLIHPNGTGLRKLIQSGSAG 608
+ RLT+G W DTM +WSPDG IAF+S+R +P + + F +YL+ P+G+GLR++ +G AG
Sbjct: 491 IRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPDGSGLRRVHVAGPAG 550
Query: 609 -------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
R NH FSPD + ++FT+++GG+ AEPIS P+Q+QPYG+++ +LDGS L RL
Sbjct: 551 SAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRL 610
Query: 662 TQNSFEDGTPAWGP 675
T N++E+GTPAWGP
Sbjct: 611 TCNAYENGTPAWGP 624
>gi|255548307|ref|XP_002515210.1| conserved hypothetical protein [Ricinus communis]
gi|223545690|gb|EEF47194.1| conserved hypothetical protein [Ricinus communis]
Length = 618
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 238/537 (44%), Positives = 326/537 (60%), Gaps = 33/537 (6%)
Query: 168 MKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT--GLTRRLTPYGVADFSPAVSP 225
D+PI+ L ++S H+ P SW A+Y+ +L RLTPYGV D+SPAVS
Sbjct: 36 FHDRPIIKDNRLYFISAHQEPDKLYKSWNALYAIDLNQEGNSVTRLTPYGVIDYSPAVSL 95
Query: 226 SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRK 285
SGKY AV SYG++ WD E +ML+TDI +F D RV + E GGWP W +ST++FHRK
Sbjct: 96 SGKYIAVGSYGSRIWDVEFQMLTTDIVVFKQSDPENRVVVCERGGWPTWSGDSTIYFHRK 155
Query: 286 SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSS 345
+++ W S+++V +S + RVTPPG+H TPA + K I VATRR
Sbjct: 156 ADDGFW-SIFQVNFSDD--LSELPCAPVRVTPPGVHCLTPAAM-HDGKRIVVATRRRGKV 211
Query: 346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL-L 404
+RHIE+FD+V F +T+ ++P H NPF+S DS +GYH+ RG S G + L
Sbjct: 212 HRHIEIFDIVSKTFYPVTQLINPSFQHYNPFVSQDSLFIGYHRFRGESA--PGETTIPNL 269
Query: 405 ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYFKN--AF 460
E +KSP+ I L R +GSF S+SP D IAF G+++V S+GS R ++ ++ AF
Sbjct: 270 EPVKSPIEGIRLLRLNGSFASYSPDSDYIAFNAGLSQGLHIVRSNGSKRWTLFSRDRTAF 329
Query: 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-------SAVRRLT-TNGKN 512
T W P + V+YT+ GP FA + V I + D D V+ LT + N
Sbjct: 330 YTSWSPTEKNVIYTTLGPVFAHVNRTVQIARVTFDPSDLKPDRNEIPCDVKMLTGEDSGN 389
Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEGPWSDTMCNWSPDGEW 571
NAFP+ SPDGK++VFRS R+G+KNLYIMDA GE G + LTEG DTM WSP G+
Sbjct: 390 NAFPACSPDGKYLVFRSGRSGHKNLYIMDAVEGEFKGDIRPLTEGACIDTMPCWSPKGDL 449
Query: 572 IAFASDRDNPGSGS-FEMYLIHPNGTGLRKLIQSGSAG----------RANHPYFSPDGK 620
IAF+S+R P + F +Y+I P+G+GLR++ GS R NH FS DG+
Sbjct: 450 IAFSSNRHKPEHANPFSIYVIKPDGSGLRRIHLEGSERLSEEEREWMERINHVTFSSDGE 509
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
++FT++ GG+SAEP++ P Q QPYG+I+ +LDGS L+RLT N +E+GTP W P F
Sbjct: 510 WLLFTANLGGLSAEPVAVPRQIQPYGDIYVARLDGSGLRRLTWNGYENGTPVWYPGF 566
>gi|384248424|gb|EIE21908.1| tricorn protease N-terminal domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 732
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 385/716 (53%), Gaps = 109/716 (15%)
Query: 18 FRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDR--PTTAN--EIKITDGESVNFNG 73
+ T D +R+++++ T+GR+ YAFDIYT + + P AN E ++TDG SVN+NG
Sbjct: 63 LKDTTTLDQQARTTVVYATVGRAQYAFDIYTKLMGNERDPELANAAETQLTDGVSVNYNG 122
Query: 74 HFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRN 133
F L++V+ER+G +Y
Sbjct: 123 AFAGDGEA---------------------------LLFVSERDGNMELY----------- 144
Query: 134 TRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGE-YLIYVSTHENPGTPR 192
+ H V+ + L L +++D+PI S + +I+VSTH+ PR
Sbjct: 145 -------KGHAEGVTGGHRPSLKRLTYSP----TLQDRPIYSPDGRIIFVSTHQPAKKPR 193
Query: 193 TSWAAVYSTELKTGLT-RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
W A+YS G T RRLTP D+SPA+S ++ A A+ G + +D+
Sbjct: 194 QGWTAIYSVSGVKGHTVRRLTPENETDYSPAISADEQWLAAAT-------GSGKTGKSDV 246
Query: 252 YIFLTRDGTQRVKIVENGGWPCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESV 310
+ + DG QR + +NGGWP + D ++FFHR++ E W S++ V L ES
Sbjct: 247 VVMRSADGLQRRIVAKNGGWPAFSRDGRSIFFHRQTPEG-WWSIFNVEL--------ESG 297
Query: 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT 370
+I R+TPPG+ FTPATS G + ++AVAT YR I + + + L++ + T
Sbjct: 298 NITRITPPGVDVFTPATSKGKD-WVAVATP-DQDGYRQIGVLRMDEGGEWALSQITNKTT 355
Query: 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKG 430
HH NPF+S D R+GYH+CR + + + +LE SPLP++ L R DG+FPSFS
Sbjct: 356 HHYNPFLSADGERLGYHRCRCADS-DTLEHIPVLERHSSPLPNVDLVRIDGAFPSFSDDD 414
Query: 431 DRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEV 487
I + E F GV V DGSN++ +Y AF T + R VV T+ GP FA+E V
Sbjct: 415 SYIVYNEGFTGVSVAERDGSNKKVIYKGPAFGTTASYHEGRH-VVATAQGPTFATEKDVV 473
Query: 488 DIISINVDDVDGVSA------VRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
DI+ + DG S V LT NG NNAFPS S DG IVFRS R+G+KNLYIM
Sbjct: 474 DILLL----ADGQSGDWHNTDVLTLTANGTGNNAFPSFSSDGSEIVFRSGRSGFKNLYIM 529
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD----NPGSGSFEMYLIHPNGT 596
EG E GL RLTEGPW DTM W+P WI FAS R+ N +G+F++++I +G+
Sbjct: 530 PTEG-EAAGLIRLTEGPWDDTMPGWTPASGWIVFASSREYVESNRPAGAFDIFMIRTDGS 588
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
GL+K+ S G ANHP+FSP S+VFT SAE ISTPHQ+QPYG++F I DG+
Sbjct: 589 GLQKVFDS-HGGLANHPHFSPSQTSVVFTR----YSAEEISTPHQFQPYGDLFAIDTDGT 643
Query: 657 DLKRLTQNSFEDGTPAWG----PRFIRPVDVEEVKNEQCAFED-CHWLNETPNQRD 707
+L+RLT + +E+GTPAWG PR + P E +C F D WL Q D
Sbjct: 644 NLRRLTHDPYENGTPAWGSEGTPRELSP----EGNVLKCDFADSVDWLKPRKRQAD 695
>gi|255557544|ref|XP_002519802.1| conserved hypothetical protein [Ricinus communis]
gi|223541041|gb|EEF42598.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 256/710 (36%), Positives = 369/710 (51%), Gaps = 97/710 (13%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSF 85
+ R SI F R DI++ + R + +E+ +TDG S N+N P + L
Sbjct: 2 AEKRGSIAFFATYRPPVPLDIFSCSVPPR-SRQDELHMTDGLSYNYNCQIIPPEA--LKT 58
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
+++ L D LI+V+ER+ A+ ++ R +
Sbjct: 59 IIKRPILASEAKEADVDSGRLTGLIFVSERDNNLETLQIALRFNDNRPS----------- 107
Query: 146 EVSTRVQVPLLDLNEVNG--GVISMKDKPILSGEY----------LIYVSTHENPGTPRT 193
V + +V G V+ M+D ++G Y LI+V+T + R
Sbjct: 108 -------VKVFSFADVYGTFDVVRMEDSGCIAGGYKIGNRIVDYSLIHVTTKDPSKDRRQ 160
Query: 194 SWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI 253
W VY T L+TG T RLTP GV D SP+VSPSG+ AVAS+ KGW+GE+E L TDIY+
Sbjct: 161 PWTVVYKTNLRTGRTERLTPPGVNDLSPSVSPSGRKVAVASFQGKGWNGEIEDLQTDIYV 220
Query: 254 F-LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI 312
+ + R+++++NGGWP W ++ +FFHRK E + SV++ + + E+
Sbjct: 221 MNVEKPPLGRMRVIKNGGWPTWGSDNIIFFHRKVGE--FWSVFRA-----DISNGETSET 273
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPT-------SSYRHIELFD-LVKNKFIELTR 364
RVTP G+ A TPA +A ++P + YRHIE+FD + I++T+
Sbjct: 274 LRVTPDGIDAITPAAINATKVAVATIRQKPKFNDIRVEAQYRHIEIFDSTAPQQSIQITQ 333
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP 424
PK H NPF+ R+GYH+C+ + + Q +KSP PD+ LFR G FP
Sbjct: 334 KTRPKADHFNPFVIDGGKRIGYHRCKSELLKSGDDIQRHFHKLKSPYPDVGLFRVSGVFP 393
Query: 425 SFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-----NAFSTVWDP-VREAVVYTSG 476
+FS G ++AFV EF V+V +SDG ++ F+ N FS VW ++ +Y
Sbjct: 394 TFSKDGSKLAFVDNEFKAVWVADSDG---MRIVFETKGPDNIFSPVWSQNPQDDTLYVCM 450
Query: 477 GPEF-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-- 533
GP F A ++ ++ I +V + RR T G NNAFPS SPDG +VFRSTR G
Sbjct: 451 GPSFNAGQTLQICAIP----NVASGARRRRQLTRGFNNAFPSTSPDGTKLVFRSTRDGGD 506
Query: 534 --YKNLYIM-DAEGGE-GYG-LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----- 583
YKNLYIM DA+ GE G G + RLT GPW+DT C WSP G+WI F+S RD P
Sbjct: 507 KQYKNLYIMEDAKVGEFGDGKITRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDAPDSD 566
Query: 584 -----GSFEMYLIHPNGTGLR-KLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEP 635
G F ++L+ N + ++I+SG AG NHP+FSPDG SI TSD +S +P
Sbjct: 567 NGLDPGYFAVFLVKVNDPSVVIRVIKSGDDLAGHVNHPFFSPDGMSIAVTSDLAAVSVDP 626
Query: 636 ISTP---HQYQPYGEIFKIKLDGSDL---------KRLTQNSFEDGTPAW 673
IS P H +PYG++F + +D SD+ R+T + +E+ TP W
Sbjct: 627 ISLPLFLHSVRPYGDLFVVDIDPSDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|255557554|ref|XP_002519807.1| conserved hypothetical protein [Ricinus communis]
gi|223541046|gb|EEF42603.1| conserved hypothetical protein [Ricinus communis]
Length = 711
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 260/711 (36%), Positives = 364/711 (51%), Gaps = 102/711 (14%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSF 85
+ R I F R DI++ P+ R T +E+ +TDG N+N P + L
Sbjct: 2 AEKRGCIAFFASYRPPVPLDIFSCPVPPR-TKQDEVHMTDGLFYNYNCQSIPPEA--LKT 58
Query: 86 LLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGA 145
++++ L+ D +I+V+ER + LE
Sbjct: 59 IIKHPKLVPEAKESDVDSGRLSGMIFVSER---------------------KNNLETLHI 97
Query: 146 EVSTRVQVPLLDLNEVNGGV--ISMKDKPILSGEY----------LIYVSTHENPGTPRT 193
+ +R +V + +V G + M+D ++G Y L+YV+T + R
Sbjct: 98 GLRSRDKVKVFSFADVYGTFNGVRMEDSGCIAGGYKVGDRIVDHSLVYVTTKDPSEDRRQ 157
Query: 194 SWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI 253
W VY T L+TG T RLTP GV D SP+VSPSG+ AVAS+ +GW+GE+E L TDIYI
Sbjct: 158 PWTVVYKTNLRTGKTERLTPSGVNDLSPSVSPSGRKVAVASFQGRGWNGEIEDLQTDIYI 217
Query: 254 F-LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI 312
+ + R K+++NGGWP W ++ +FFHRK E + V++ + + ++ I
Sbjct: 218 MNIEKPPLGRTKVIKNGGWPTWGSDNVIFFHRKVGE--FWGVFRA-----DISNGKASEI 270
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVKNKF-IEL 362
RVTP G A TPA +AVAT R S YRHIE+FDL K I++
Sbjct: 271 LRVTPDGFDAITPAAISAIK--VAVATIRQKSKFTDVRVEAQYRHIEVFDLTAPKQPIQI 328
Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422
T+ PK H NPF+ R+GYH+C+ + N Q + SP PD+ LFR G
Sbjct: 329 TQKTRPKDDHFNPFVIDGGKRIGYHRCKSDLLKNGDNIQRHFHKLDSPHPDVGLFRTSGV 388
Query: 423 FPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYF----KNAFSTVWDP-VREAVVYTS 475
FP+FS G ++AFV EF V++ +S G R VY N FS VW ++ +Y
Sbjct: 389 FPTFSKDGSKLAFVDNEFKAVWIDDSKG--LRSVYETKGPDNIFSPVWSQNPQDDTLYVC 446
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-- 533
GP F S S + I +I +V + RR T G NNAFPS +PDG +VFRSTR G
Sbjct: 447 MGPPFNSGES-LQICAI--PNVASGARQRRQLTRGFNNAFPSTNPDGTKLVFRSTRDGGD 503
Query: 534 --YKNLYIM-DAEGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---- 583
YKNLYIM DA GE YG + RLT GPW DT C WSP G WI F+S RD P
Sbjct: 504 KKYKNLYIMEDARVGE-YGDGKITRLTNGPWIDTHCQWSPRGNWIVFSSTRDKPKDAPET 562
Query: 584 ------GSFEMYLIHPNGTG-LRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAE 634
G F ++L+ N + + ++I+SG AG NHP+FSPDG SI TSD +S +
Sbjct: 563 DNGLDPGYFAVFLVKANDSSVVVRVIKSGDNIAGHVNHPFFSPDGMSIAVTSDLAAVSVD 622
Query: 635 PISTP---HQYQPYGEIFKIKLDGSDL---------KRLTQNSFEDGTPAW 673
P+S P H +PYG++F + +D D+ R+T + +E+ TP+W
Sbjct: 623 PVSLPHFLHSVRPYGDVFTLDIDPDDINKNKDLKKFNRITHSRYENATPSW 673
>gi|255566336|ref|XP_002524154.1| conserved hypothetical protein [Ricinus communis]
gi|223536572|gb|EEF38217.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 259/714 (36%), Positives = 369/714 (51%), Gaps = 105/714 (14%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGHFPSPSSPFLS 84
+ R SI F R DI++ + PT+ +E+ +TDG S N+N P + L
Sbjct: 2 AEKRGSIAFFATYRPPVPLDIFSCSVP--PTSRQDELHMTDGLSYNYNCQLIPPEA--LK 57
Query: 85 FLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHG 144
+++ L D LI+V+ER+ + A+ ++ +
Sbjct: 58 TIIKRPKLASEAKGSDVDSGRLSGLIFVSERDNNLETLHIALRFNDNPPS---------- 107
Query: 145 AEVSTRVQVPLLDLNEVNGGV--ISMKDKPILSGEY----------LIYVSTHENPGTPR 192
V + +V G + M+D ++G Y LIYV+T + R
Sbjct: 108 --------VKVFSFADVYGTFDGVRMEDSGCIAGGYKVGSRTADCSLIYVTTKDPSKDRR 159
Query: 193 TSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIY 252
W VY T LKTG T RLTP GV D SP+VSPSG+ AVAS+ KGW+GE+E L TDI+
Sbjct: 160 QPWTVVYKTNLKTGKTDRLTPSGVNDLSPSVSPSGRKVAVASFQGKGWNGEIEDLQTDIH 219
Query: 253 IF-LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
+ + + R+K+++NGGWP W ++ +FFHRK E + SV++ + + ++
Sbjct: 220 VMNVEKQPLGRMKVIKNGGWPTWGSDNVIFFHRKVGE--FWSVFRA-----DISNGQTSE 272
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFD-LVKNKFIE 361
RVTP G+ A TPA N+ +AVAT R S YRHIE+FD + I+
Sbjct: 273 TLRVTPDGIDAITPAAI--NSTKVAVATIRQKSKFSDIRVEAQYRHIEIFDSTAPQQPIQ 330
Query: 362 LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG 421
+T+ PK H NPF+ R+GYH+C+ + Q + SP PD+ LFR G
Sbjct: 331 ITQKTRPKADHYNPFVVDGGKRIGYHRCKSDLLNHGDDIQRHFHKLNSPHPDVGLFRVSG 390
Query: 422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-----NAFSTVWDP-VREAVVY 473
FP+FS G ++AFV EF V+V +SDG ++ F+ N FS VW ++ +Y
Sbjct: 391 VFPTFSKDGSKLAFVDNEFKAVWVADSDG---LRIVFETKGPDNIFSPVWSQNPQDDTLY 447
Query: 474 TSGGPEF-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
GP F A ++ ++ I +V + RR T G NNAFPS SPDG +VFRSTR
Sbjct: 448 VCMGPSFNAGQTLQICAIP----NVASGARRRRQLTKGFNNAFPSTSPDGTKLVFRSTRD 503
Query: 533 G----YKNLYIM-DAEGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS- 583
G YKNLYIM DA+ GE YG + RLT GPW+DT C WSP G+WI F+S RD P
Sbjct: 504 GGDKKYKNLYIMEDAQVGE-YGDGKVTRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDA 562
Query: 584 ---------GSFEMYLIHPNGTGLR-KLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGI 631
G F ++L+ N + ++I+ G AG NHP+FSPDG SI TSD +
Sbjct: 563 PETDNGLDPGYFAVFLVKVNDPSVVIRVIKGGDDLAGHVNHPFFSPDGMSIAVTSDLAAV 622
Query: 632 SAEPISTP---HQYQPYGEIFKIKLDGSDL---------KRLTQNSFEDGTPAW 673
SA+PIS P H +PYG++F + +D D+ R+T + +E+ TP W
Sbjct: 623 SADPISLPLFLHSVRPYGDVFTVDIDPDDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|255566348|ref|XP_002524160.1| conserved hypothetical protein [Ricinus communis]
gi|223536578|gb|EEF38223.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 261/704 (37%), Positives = 375/704 (53%), Gaps = 85/704 (12%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGHFPSPSSPFLS 84
+ R SI F R DI++ P+ PT+ +E+ +TDG S N+N P + L
Sbjct: 2 AEKRGSIAFFATYRPPVPLDIFSCPVP--PTSRQDELHMTDGLSYNYNCQVIPPEA--LK 57
Query: 85 FLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYY-DTRRNTRSRTALEQH 143
+++ L D LI+++ER+ + + A+ + D+ + + + + +
Sbjct: 58 VIIKRPKLASEAKESDVDSGRLSGLIFISERDNSLETLHIALRFNDSPPSVKVFSFADVY 117
Query: 144 GAEVSTRVQVPLLDLNEVNGGVIS--MKDKPILSGEYLIYVSTHENPGTPRTSWAAVYST 201
G R++ +GG I+ K LIYV+T + R W VY T
Sbjct: 118 GTYNGVRME---------DGGCIAGGYKVGNRTVDYSLIYVTTKDPSTDRRQPWTVVYKT 168
Query: 202 ELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF-LTRDGT 260
LKTG T RLTP GV D SP+VSPS + AVAS+ KGW+GE+E L TDIY+ + +
Sbjct: 169 NLKTGKTDRLTPSGVNDLSPSVSPSRRKIAVASFQGKGWNGEIEDLRTDIYVMNIEKPPL 228
Query: 261 QRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
R+++++NGGWP W ++ +FFHRK + + SV++ + + ++E+V VTP G+
Sbjct: 229 GRMRVIKNGGWPTWGSDNVIFFHRKVGK--FWSVFRADI--SNGQTSETVC---VTPDGI 281
Query: 321 HAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFD-LVKNKFIELTRFVSPKT 370
+A TPA N+ +AVAT R S YRHIE+FD + I++T+ K
Sbjct: 282 NAITPAAI--NSTKVAVATIRQESKFSDIRLEAQYRHIEIFDSTAPQQSIQITQKTRSKA 339
Query: 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKG 430
H NPFI R+GYH+C+ + + Q + SP PD+ LFR G FP+FS G
Sbjct: 340 DHFNPFIIDGGKRIGYHRCKSDLVKNGDDIQRHFHKLNSPHPDVGLFRVSGVFPTFSVDG 399
Query: 431 DRIAFV--EFPGVYVVNSDGSNRRQVYF----KNAFSTVWDP-VREAVVYTSGGPEF-AS 482
++AFV EF V+V +S+G R VY N FS VW ++ +Y GP F A
Sbjct: 400 SKLAFVDNEFKAVWVADSNG--LRIVYETKGPDNIFSPVWSQNPQDDTLYVCMGPSFNAG 457
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG----YKNLY 538
+S ++ I +V + RR T G NNAFPS SPDG +VFRSTR G YKNLY
Sbjct: 458 QSLQICAIP----NVASGARRRRQLTKGFNNAFPSTSPDGTKLVFRSTRDGGDKKYKNLY 513
Query: 539 IM-DAEGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------G 584
IM DA+ GE YG + RLT GPW+DT C WSP G+WI F+S RD P G
Sbjct: 514 IMEDAQVGE-YGDGKITRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDAPETDNGLDPG 572
Query: 585 SFEMYLIHPNGTGLR-KLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTP-- 639
F ++L+ N + ++I+SG AG NHP+FSPDG SI TSD +SA+PIS P
Sbjct: 573 YFAVFLVKVNDPSVVIRVIKSGDDLAGHVNHPFFSPDGMSIAVTSDLAAVSADPISLPLF 632
Query: 640 -HQYQPYGEIFKIKLDGSDL---------KRLTQNSFEDGTPAW 673
H +PYG++F + +D D+ R+T + +E+ TP W
Sbjct: 633 LHSVRPYGDVFTVDIDPDDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|115452667|ref|NP_001049934.1| Os03g0314500 [Oryza sativa Japonica Group]
gi|108707813|gb|ABF95608.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113548405|dbj|BAF11848.1| Os03g0314500 [Oryza sativa Japonica Group]
gi|125586045|gb|EAZ26709.1| hypothetical protein OsJ_10615 [Oryza sativa Japonica Group]
Length = 730
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 255/712 (35%), Positives = 367/712 (51%), Gaps = 100/712 (14%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR SI F R A DI+ P + + +E+ +TDG+S N+N P P + + +
Sbjct: 4 SRGSIAFFASYRPPVALDIFCCP-APPSSPKDELHLTDGDSYNYNCQ-PIPPAALKTVVE 61
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
R D L++V+ER + A+ ++ + + + +G +
Sbjct: 62 RLGVSRGDAVEGDIDSGRITGLVFVSEREHNLETLHIALRFNDDGEVQVFSLADAYGGD- 120
Query: 148 STRVQVPLLDLNEVNGGVIS---MKDKPILSG----------EYLIYVSTHENPGTPRTS 194
G+ S M+D ++G YL+YVST E R+
Sbjct: 121 ----------------GLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKEPVRERRSP 164
Query: 195 WAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF 254
W Y T L+TG T RLTP G D SP+VSPSGK AVASY K WDGE++ L+T+IY+
Sbjct: 165 WNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTNIYVM 224
Query: 255 LTRDGTQ-RVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ 313
+ +Q R +++ENGGWP W E +FFHRK + D S + V + L + E+V
Sbjct: 225 SLENPSQDRERVIENGGWPSWGSEDVIFFHRK-DGDGENSCWGVF--RHTLSTGETV--- 278
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVK-NKFIELT 363
RVTP + TPA + +AVA R S YRHIE+FD+ + +++T
Sbjct: 279 RVTPAAFDSVTPAAI--DETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQIT 336
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF 423
R PK H NPF+ +GYH+C+ + + ++SP D+ +FR G F
Sbjct: 337 RNTRPKADHFNPFVMDGGKFIGYHRCKSELLQHGDDLPRKFHKLQSPHEDVGVFRVSGVF 396
Query: 424 PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-----NAFSTVWDPVREAVVYTSG 476
P+FS G ++AFV EF V++ +S G +V FK + FS +W+ ++ ++Y
Sbjct: 397 PTFSKDGSQLAFVDNEFKSVWLADSQG---MRVVFKTDGPDSVFSPLWNSKKD-ILYVCM 452
Query: 477 GPEF-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-- 533
GP F ASE+ E+ I NV D S R+LT G NNAFPS +PDG VFRSTR G
Sbjct: 453 GPSFKASETLEIHSIH-NVSTGDRKS--RQLTFGGFNNAFPSTNPDGTKFVFRSTRDGGA 509
Query: 534 --YKNLYIM-DAEGGEGYG-----LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-- 583
KNLYIM DA+ GEG + R+T G W+DT C WSP+G+WI F+S+RD P
Sbjct: 510 KYSKNLYIMEDADAGEGEDGSQSTVTRMTAGEWTDTHCQWSPNGKWIVFSSNRDRPADAP 569
Query: 584 --------GSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISA 633
G F +YL+ + ++I+SG AG NHP FSPDG+SI TSD ++A
Sbjct: 570 ERDHGLDPGYFAVYLMDVASRSVVRVIRSGYDVAGHVNHPVFSPDGRSIAVTSDLAAVTA 629
Query: 634 EPISTP---HQYQPYGEIFKIKLDGSDLK---------RLTQNSFEDGTPAW 673
+P+S P H +PYG+IF + +D D+ R+T + +E+ TPAW
Sbjct: 630 DPMSLPLFLHSVRPYGDIFTVDIDPDDMARNEDVEGFVRVTHSRYENSTPAW 681
>gi|125543618|gb|EAY89757.1| hypothetical protein OsI_11300 [Oryza sativa Indica Group]
Length = 737
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 257/714 (35%), Positives = 367/714 (51%), Gaps = 104/714 (14%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR SI F R A DI+ P + + +E+ +TDG+S N+N P P + + +
Sbjct: 11 SRGSIAFFASYRPPVALDIFCCP-APPSSPKDELHLTDGDSYNYNCQ-PIPPAALKTVVE 68
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
R D L++V+ER + A+ ++ + + + +G +
Sbjct: 69 RLGVSRGDAIEGDIDSGRITGLVFVSEREHNLETLHIALRFNDDGEVQVFSLADAYGGD- 127
Query: 148 STRVQVPLLDLNEVNGGVIS---MKDKPILSG----------EYLIYVSTHENPGTPRTS 194
G+ S M+D ++G YL+YVST E R+
Sbjct: 128 ----------------GLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKEPVRERRSP 171
Query: 195 WAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF 254
W Y T L+TG T RLTP G D SP+VSPSGK AVASY K WDGE++ L+T+IY+
Sbjct: 172 WNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTNIYVM 231
Query: 255 LTRDGTQ-RVKIVENGGWPCWVDESTLFFHRK--SEEDDWISVYKVILPQTGLVSTESVS 311
+ +Q R +++ENGGWP W E +FFHRK E+ V++ L TG E+V
Sbjct: 232 SLENPSQDRERVIENGGWPSWGSEDVIFFHRKDGGGENSCWGVFRHTL-STG----ETV- 285
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVK-NKFIE 361
RVTP A TPA + +AVA R S YRHIE+FD+ + ++
Sbjct: 286 --RVTPAAFDAVTPAAI--DETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQ 341
Query: 362 LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG 421
+TR PK H NPF+ +GYH+C+ + + ++SP D+ +FR G
Sbjct: 342 ITRNTRPKADHFNPFVMDGGKFIGYHRCKSELLQHGDDLPRKFHKLQSPHEDVGVFRVSG 401
Query: 422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-----NAFSTVWDPVREAVVYT 474
FP+FS G ++AFV EF V++ +S G +V FK + FS +W+ ++ ++Y
Sbjct: 402 VFPTFSKDGSQLAFVDNEFKSVWLADSQG---MRVVFKTDGPDSVFSPLWNSKKD-ILYV 457
Query: 475 SGGPEF-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
GP F ASE+ E+ I NV D S R+LT G NNAFPS +PDG VFRSTR G
Sbjct: 458 CMGPSFKASETLEIHSIH-NVSTGDRKS--RQLTFGGFNNAFPSTNPDGTKFVFRSTRDG 514
Query: 534 ----YKNLYIM-DAEGGEGYG-----LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
KNLYIM DA+ GEG + R+T G W+DT C WSP+G+WI F+S+RD P
Sbjct: 515 GAKYSKNLYIMEDADAGEGEDGSQSTVTRMTAGEWTDTHCQWSPNGKWIVFSSNRDRPAD 574
Query: 584 ----------GSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGI 631
G F +YL+ + ++I+SG AG NHP FSPDG+SI TSD +
Sbjct: 575 APERDHGLDPGYFAVYLMDVASRSVVRVIRSGYDVAGHVNHPVFSPDGRSIAVTSDLAAV 634
Query: 632 SAEPISTP---HQYQPYGEIFKIKLDGSDLK---------RLTQNSFEDGTPAW 673
+A+P+S P H +PYG+IF + +D D+ R+T + +E+ TPAW
Sbjct: 635 TADPMSLPLFLHSVRPYGDIFTVDIDPDDMARNEDVEGFVRVTHSRYENSTPAW 688
>gi|302141778|emb|CBI18981.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 362 bits (929), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 247/409 (60%), Gaps = 69/409 (16%)
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
I+RVTPPGLHAFTPATSPGN FIAVATRR S YRHIELFDL+ N+F ELTR +SP+TH
Sbjct: 177 IERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTH 236
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
H NPFISPDS+R+GYH+CRG S + LLLEN+KSPLP+ISLFRFDGSFPSFSP GD
Sbjct: 237 HFNPFISPDSTRIGYHRCRGDSNGGK-SPHLLLENLKSPLPEISLFRFDGSFPSFSPGGD 295
Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
RIA+VEFPGVYVVN DGS RR+V+ AFST WD R+ VVYTS GP FA+ES++VDI+S
Sbjct: 296 RIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVS 355
Query: 492 INVDDVDGVS--------AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYI 539
INVDDVD S + RLT + + SPDG WIVF S R G LY+
Sbjct: 356 INVDDVDQPSYKKLTTGGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYV 415
Query: 540 MDAEGGEGYGLHRLTE-GPWSDTMCNW-SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
+ G GL ++ G T W SPDG+ I F SD
Sbjct: 416 IHP---NGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSD-------------------- 452
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ + A+H + P G V D GS
Sbjct: 453 -YAAVSAEPISNAHH--YQPYGDIFVVNLD---------------------------GSG 482
Query: 658 LKRLTQNSFEDGTPAWGPRFIRPVDVE-EVKNEQCAFEDCHWLNETPNQ 705
L RLT NS+EDGTPAW P+ IRPVDV+ +V C+FEDCHWL+ TPN
Sbjct: 483 LHRLTHNSYEDGTPAWAPKVIRPVDVKLQVDGPHCSFEDCHWLSNTPNH 531
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 141/238 (59%), Gaps = 46/238 (19%)
Query: 1 MKLQTIFCSLLYLLSAVFRATADEDS--SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA 58
M T+ L L+ +F A AD D +S +SIIFTTLGRSDYAFD+++LP T A
Sbjct: 9 MNRITLLFFFLSLVITLFSAAADHDGPTTSTTSIIFTTLGRSDYAFDVFSLPTLGPSTIA 68
Query: 59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGT 118
+E++ITDG+SVNFNGHF PSSP +S LL NQTL RNG+
Sbjct: 69 DELRITDGQSVNFNGHF--PSSPIIS-LLANQTL----------------------RNGS 103
Query: 119 SNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLN-EVNGGVISMKDKPILSGE 177
SNIY D +YYDT N+R R+AL E + RV+VPLL N E + G ISMKD+P L GE
Sbjct: 104 SNIYLDIIYYDTPTNSRRRSAL-----ETAVRVEVPLLGTNTEQSDGRISMKDRPSLVGE 158
Query: 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGK-YTAVAS 234
L+YVSTHE+ G PR + R+TP G+ F+PA SP K + AVA+
Sbjct: 159 DLVYVSTHEDSGVPRKM------------VIERVTPPGLHAFTPATSPGNKNFIAVAT 204
>gi|297722933|ref|NP_001173830.1| Os04g0278101 [Oryza sativa Japonica Group]
gi|255675272|dbj|BAH92558.1| Os04g0278101 [Oryza sativa Japonica Group]
Length = 378
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/402 (49%), Positives = 248/402 (61%), Gaps = 62/402 (15%)
Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTR 364
E+ S++R+TP G HAFTPA SPG +AVATR S YRHIE+ D+ KN + E+TR
Sbjct: 16 VEAASVERITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTR 75
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGS 422
V+P+ H NPFIS D +RVGYH+C G R +G++ LLLENIKSP+P SLFR DGS
Sbjct: 76 PVAPRVHRFNPFISLDGARVGYHRCWG---RGNGDSPLLLENIKSPVPADTFSLFRIDGS 132
Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV-VYTSGGPEFA 481
FP R S S R + V E ++TS GP+FA
Sbjct: 133 FPPSRTTARR-------------SRSSGCRGYLLRERLPDVVGLEEERRDIHTSIGPDFA 179
Query: 482 SESSEVDIISINV-DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
ES+EVD+++I++ DD D ++++LT +NNAFPS PDGKW+
Sbjct: 180 IESTEVDVVAISLGDDDDKTISMKKLTVGDENNAFPSPPPDGKWL--------------- 224
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
GE G+ RLTEGPWSDTMCNWSPD EWIAFASDR PGSGSF + ++HPNGTG
Sbjct: 225 ---DGEAGGIRRLTEGPWSDTMCNWSPDDEWIAFASDRHAPGSGSFAI-MVHPNGTG--- 277
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
D KS+VFTSDY +SAEP+S PH YQPYGEI+ + +DGS+++R
Sbjct: 278 ----------------SDSKSLVFTSDYAAVSAEPVSNPHHYQPYGEIYTVDIDGSNIRR 321
Query: 661 LTQNSFEDGTPAWGPRFIRPVDVEEV--KNEQCAFEDCHWLN 700
LT NSFEDGTP+W P F+ P DV E + +CAF+DCHWLN
Sbjct: 322 LTHNSFEDGTPSWTPYFLDPRDVGETLQASGRCAFQDCHWLN 363
>gi|242072218|ref|XP_002446045.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor]
gi|241937228|gb|EES10373.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor]
Length = 730
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 255/703 (36%), Positives = 362/703 (51%), Gaps = 82/703 (11%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR SI F R DI+++P + + +E+ +TDG S N+N P P S L
Sbjct: 4 SRGSIAFFATYRPPMPLDIFSVP-NPPSSIRDEVHLTDGVSYNYNCR-PIPKDALKSLLK 61
Query: 88 RNQTLIQSPGPQDSRDPPPLQ-LIYVTERNGTSNIYYDAVYYDT---RRNTRSRTALEQH 143
R + + + D + L++V+ER+G A+ +D ++ + + +
Sbjct: 62 RPKLVAEGGATDADVDSGRVSGLLFVSERDGGLETLRVALRFDDSGGKQTCKVFSLADVF 121
Query: 144 GAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL 203
GA T + L+ + GG M + + LIYVST E R+ W VY T L
Sbjct: 122 GAADFTGAR---LEDSGCIGGGYKMGSRSV--DHSLIYVSTKEPVEERRSPWTVVYKTNL 176
Query: 204 KTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
+TG T RLTP G D SPAVSPSGK A+A++ +GW+GE+E L TDI++ R
Sbjct: 177 RTGKTERLTPKGQFDLSPAVSPSGKKVAMATFRPEGWEGEIEDLQTDIFVMNVERPPMRK 236
Query: 264 KIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323
++++NGGWP W + +FFHRK D W V++ T + RVTP A
Sbjct: 237 RLIKNGGWPSWASDDVIFFHRKV-GDTW-GVFR--------HDTRTNETVRVTPEAFDAV 286
Query: 324 TPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVKNKF---IELTRFVSPKTH 371
TPA + +AVAT R S YRHIE+FD +++T+ PKT
Sbjct: 287 TPAAI--SETKVAVATIRQKSKFTDVRVEAQYRHIEIFDTAAGAGQPPLQITQKTRPKTD 344
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
H NPF+ D RVGYH+ R + + ++SP+ D+ FR G FP+ S G
Sbjct: 345 HFNPFVLDDGGRVGYHRARSDLLKHGDDVPRNFHKMESPVKDVGTFRVSGVFPTISNDGS 404
Query: 432 RIAFV--EFPGVYVVNSDGSNRRQVYF----KNAFSTVW--DPVREAVVYTSGGPEFASE 483
++AFV EF V+V +S G R VY N F+ +W +P ++ ++Y GP F +
Sbjct: 405 KLAFVDNEFKAVWVADSQG--LRVVYETKGPDNIFAPMWNQNPDKD-ILYVCMGPSF-NA 460
Query: 484 SSEVDIISI-NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG----YKNLY 538
++I +I NV G R+LT NNAFPS SPDG VFRSTR G +KNLY
Sbjct: 461 GKPLEICAIPNVS--SGTRQRRQLTKGKFNNAFPSSSPDGSRFVFRSTRDGGDKKHKNLY 518
Query: 539 IM-DAEGGE--GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP----------GSGS 585
I DAE GE G + RLT G W+DT C WSP G+WI F+S RD P SG
Sbjct: 519 IAEDAEVGEYSGGTVTRLTNGEWTDTHCQWSPRGDWIVFSSTRDKPKDAPELDNGLDSGY 578
Query: 586 FEMYLIH-PNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTP--- 639
+ ++++ + T + +++QSG G NHP FSPDG+SI T+D +SA+PIS P
Sbjct: 579 YAVFMVKVSDPTVVIRVVQSGDDLGGHVNHPVFSPDGRSIAMTADLAAVSADPISLPLFI 638
Query: 640 HQYQPYGEIFKIKLDGSDLK---------RLTQNSFEDGTPAW 673
H +PYG+IF + +D D + R+T + +E TPAW
Sbjct: 639 HSVRPYGDIFVVDIDPDDARKNKDVKKFHRVTHSRYEYSTPAW 681
>gi|242041123|ref|XP_002467956.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor]
gi|241921810|gb|EER94954.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor]
Length = 724
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 248/694 (35%), Positives = 363/694 (52%), Gaps = 70/694 (10%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR SI F T R A DI+ P+ + +E+ +TDG S N+N P P + + +
Sbjct: 4 SRGSIAFFTSYRPPVALDIFCCPVPPS-SKQDELHLTDGLSYNYNCR-PIPPAALKTIIK 61
Query: 88 RNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEV 147
R + ++ D L++V+ER + + A+ + + + + +G+++
Sbjct: 62 RLRLAPEAVIDDDVDSGHLTGLVFVSEREHSLETLHVALRFVANNEVKIFSLADIYGSDL 121
Query: 148 STRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
+ + L D + GG + + YL+YVST E R+ W VY T L+T
Sbjct: 122 FSGAR--LEDNGCIAGG---YEVDGSTNDHYLVYVSTKEPVQERRSPWNVVYKTNLRTSE 176
Query: 208 TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF-LTRDGTQRVKIV 266
T LTP G D SP+VSPSGK AVAS+ K WDGE++ L T+IY+ L +R +++
Sbjct: 177 TEHLTPPGTFDLSPSVSPSGKKIAVASFQGKTWDGEIKDLKTNIYLTSLENPPLERRRVI 236
Query: 267 ENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
ENGGWP W E+ +FFHRK D W V++ L + E+V RVTP A TPA
Sbjct: 237 ENGGWPSWGSENVIFFHRKV-GDIW-GVFRY-----NLSTGETV---RVTPEAFDAVTPA 286
Query: 327 TSPGNNKFIAVATRRPTS---------SYRHIELFDL-VKNKFIELTRFVSPKTHHLNPF 376
+ +AVAT R S YRHIE+FD + + +++T+ K H NPF
Sbjct: 287 AI--DETRVAVATIRQKSEFTDVRNEAQYRHIEIFDTSAQEQPLQITQNTRAKADHFNPF 344
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
+ D YH+C+ + + ++SP D+ +FR G FP+FS G ++AFV
Sbjct: 345 VM-DGGNTYYHRCKSDLLKHGDDVPRHFHKVQSPHEDVGVFRVSGVFPTFSKDGSKLAFV 403
Query: 437 --EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV---REAVVYTSGGPEF-ASESSEVDII 490
EF V++ +S G R V+ + +++ PV ++ ++Y GP F A+E+ E+ I
Sbjct: 404 DNEFKAVWLADSHG--LRVVFETDGPDSIFSPVWNQKKDILYVCMGPSFKANETLEIYAI 461
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG----YKNLYIM-DAEGG 545
R+LT NNAFP +PDG VFRSTR G YKNLYIM DAE G
Sbjct: 462 PDVSRGARARRHTRQLTKGKFNNAFPFTNPDGTKFVFRSTRDGGDKNYKNLYIMEDAEFG 521
Query: 546 E--GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------GSFEMYLIHP 593
E G + RLTEG W DT C WSPDG + FAS+RD P G F +YL++
Sbjct: 522 EVGGGKVTRLTEGSWIDTHCQWSPDGNLVVFASNRDKPADAPERDHGLDPGYFAVYLMNV 581
Query: 594 NGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTP---HQYQPYGEI 648
+ + ++I+SG +G NHP FSPDG+SI TSD +SA+P+S P H +PYG+I
Sbjct: 582 SDRSVVRVIRSGYDLSGHVNHPVFSPDGRSIAVTSDLAAVSADPMSLPTFLHSVRPYGDI 641
Query: 649 FKIKLDGSDLK---------RLTQNSFEDGTPAW 673
F + +D D++ R+T + +E+ TPAW
Sbjct: 642 FSVDIDPDDMEKNKDLDKFVRVTHSRYENSTPAW 675
>gi|413917762|gb|AFW57694.1| putative WD40-like beta propeller repeat family protein [Zea mays]
Length = 730
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 261/717 (36%), Positives = 361/717 (50%), Gaps = 110/717 (15%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR SI F R DI+++PI + +E+ +TDG S N+N P P S L
Sbjct: 4 SRGSIAFFATYRPPVPLDIFSVPIPPS-SIRDEVHLTDGVSYNYNCR-PIPKDALKSLLK 61
Query: 88 RNQTLIQSPGPQDSRDPPPLQ-LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
R + D + L++V+ER+ A+++ + E
Sbjct: 62 RPKLAADGGATDADVDSGRVSGLLFVSERDDGLETLRVALHF-------------KDSGE 108
Query: 147 VSTRVQVPLLDLNEVNGGV----ISMKDKPILSGEY----------LIYVSTHENPGTPR 192
+ +V L +V G + ++D + G Y LIYVST E R
Sbjct: 109 QACKV----FSLADVFGAADFSGVRLEDSGCVGGGYKVGSRTVDHSLIYVSTKEPVQERR 164
Query: 193 TSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIY 252
+ W VY T L+TG T RLTP G D SPAVSPSGK A+A++ +GW+GE+E L TDI+
Sbjct: 165 SPWTVVYKTNLRTGKTERLTPKGQFDLSPAVSPSGKKVAMATFRPEGWEGEIEDLQTDIF 224
Query: 253 IFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI 312
+ R +++ NGGWP W E +FFHRK E W V++ T +
Sbjct: 225 VMNVERPPMRKRLIRNGGWPSWASEDVIFFHRKVGE-TW-GVFR--------HDTRTNET 274
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVK---NKFI 360
RVTP A TPA ++ +AVAT R S YRHIE+FD +
Sbjct: 275 VRVTPEAFDAMTPAAI--SDTKVAVATIRQKSKFSDVRVEAQYRHIEIFDTAAAAGQPSV 332
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL--LENIKSPLPDISLFR 418
++T+ PK H NPF+ D RVGYH+ R + G++ L + I+SP+ D+ LFR
Sbjct: 333 QVTQKTRPKADHFNPFVLDDGVRVGYHRARSDLVKP-GDDVLSRNFDKIESPVKDVGLFR 391
Query: 419 FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYF----KNAFSTVW--DPVREA 470
G FP+ S G ++AFV EF V+V +S G R VY N FS +W +P ++
Sbjct: 392 VSGVFPTISKDGSKLAFVDNEFKAVWVADSQG--LRVVYETKGPDNIFSPMWNQNPDKD- 448
Query: 471 VVYTSGGPEFASESSEVDIISI-NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
++Y GP F + ++I +I NV G R+LT NNAFPS SPDG VFRS
Sbjct: 449 ILYVCMGPSF-NAGKPLEICAIPNVS--SGARQRRQLTKGKFNNAFPSSSPDGNRFVFRS 505
Query: 530 TRTG----YKNLYIMD-AEGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
TR G +KNLYI + AE GE YG + RLT G W+DT C WSP G+WI F+S RD P
Sbjct: 506 TRDGGDKKHKNLYIAENAEVGE-YGDGTVTRLTNGEWTDTHCQWSPSGDWIVFSSTRDKP 564
Query: 582 GS----------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDY 628
G F ++++ + T + ++I+SG G NHP FSPDG+SIV TSD
Sbjct: 565 KDAPELDNGLDPGYFAVFMVKASDPTVVIRVIRSGDDLGGHVNHPVFSPDGRSIVVTSDL 624
Query: 629 GGISAEPISTP---HQYQPYGEIFKIKLDGSD---------LKRLTQNSFEDGTPAW 673
+SA+PIS P H +PYG+IF + +D D R+T + +E TP W
Sbjct: 625 AAVSADPISLPLFIHSVRPYGDIFVVDIDPEDASKNKDVKKFHRVTHSRYEYSTPTW 681
>gi|357141326|ref|XP_003572184.1| PREDICTED: uncharacterized protein LOC100846313 [Brachypodium
distachyon]
Length = 765
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 258/727 (35%), Positives = 375/727 (51%), Gaps = 97/727 (13%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR +I F R DI++ P+ ++ +E+ +TDG S N++ P P+S + L
Sbjct: 5 SRGNIAFFATYRPPVPLDIFSSPVPPS-SSRDEVHLTDGVSYNYDCR-PIPASALKALLR 62
Query: 88 RNQTLIQSPGPQDSRDPPPLQ-LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
R + + D + L++V+ER+G A+ +D T+ + + G+
Sbjct: 63 RPKLAADGGATEADVDAGRVSGLVFVSERDGGLETLRIALRFDKDNKTKVFSLADVFGSG 122
Query: 147 VSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
+ + L+ + GG + + + LIYVST E R+ W VY T L+TG
Sbjct: 123 DFSGTR---LEDSGCFGGGYKVGSRTV--DHSLIYVSTKEPVKDRRSPWTVVYKTNLRTG 177
Query: 207 LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF-LTRDGTQRVKI 265
T RLTP G D SPAVSPSGK AVAS+ +GW GE+E L TDI++ + + R +
Sbjct: 178 KTERLTPKGAYDLSPAVSPSGKKVAVASFRAEGWQGEIENLKTDIFVMNVEKPPLGRKLL 237
Query: 266 VENGGWPCWVDESTLFFHRKSE--------EDDWISVYK--VILPQTGLVSTESVSIQ-- 313
V++GGWP W E+ +FFHR S+ E W +V++ V +T V+ E + +
Sbjct: 238 VKDGGWPSWGSENFVFFHRGSDKTLPSGMIETSW-AVFRLDVATGETVRVTPEGLDVATG 296
Query: 314 ---RVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVKN--KF 359
RVTP GL AFTPA + +AVAT R S YRHIE+FD+ +
Sbjct: 297 ETVRVTPEGLDAFTPAAI--SETKVAVATIRQKSKFSDVRVEAQYRHIEIFDVAAGGAQA 354
Query: 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF 419
++T+ PK H NPF+ +RVGYH+ R + + ++SPL D+ LFR
Sbjct: 355 QQITQKTRPKGDHYNPFVLDGGARVGYHRVRSDLLKPGDDVPRNFHKLESPLKDVGLFRV 414
Query: 420 DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNA----FSTVW--DPVREAV 471
G FP+ S G ++AFV EF V+V ++ G R VY FST+W +P ++ V
Sbjct: 415 SGVFPTISKDGSKLAFVDNEFKAVWVADAQG--LRIVYETKGPDSIFSTMWNQNPDKD-V 471
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRST 530
+Y GP F + ++I +I +V + RRL T GK NNAFPS SPDG VFRST
Sbjct: 472 LYVCMGPSF-NAGKPLEICAIP--NVSSGARQRRLLTKGKFNNAFPSSSPDGTRFVFRST 528
Query: 531 R------TGYKNLYIMD----AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
R +KNLYIM+ E GEG + RLT+G W+DT C WSP G+WI F+S RD
Sbjct: 529 RDHAKSERKHKNLYIMEDQEVGEYGEGGKVTRLTDGEWTDTHCQWSPSGDWIVFSSTRDK 588
Query: 581 PGS----------GSFEMYLIHPNGTGLR-KLIQSGS--AGRANHPYFSPDGKSIVFTSD 627
P + G F ++++ + + +++ SG +G NHP FSP+G+SI TSD
Sbjct: 589 PPTAAPLDHGLDPGYFAVFMVKASDPAVVIRVVGSGDDLSGHVNHPVFSPNGRSIAVTSD 648
Query: 628 YGGISAEPISTP---HQYQPYGEIFKIKLD-----GSD-------------LKRLTQNSF 666
+SA+PIS P H +PYG+IF + +D G D R+T + +
Sbjct: 649 LAAVSADPISLPLFLHSVRPYGDIFAVDIDDILRLGDDAEKLKKIKDLRRKFHRITHSRY 708
Query: 667 EDGTPAW 673
E TP W
Sbjct: 709 EYSTPEW 715
>gi|357147755|ref|XP_003574472.1| PREDICTED: uncharacterized protein LOC100838501 [Brachypodium
distachyon]
Length = 752
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 260/722 (36%), Positives = 376/722 (52%), Gaps = 100/722 (13%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLL 87
SR +I F R DI++ P+ ++ +E+ +TDG S N++ P P+S + L
Sbjct: 5 SRGNIAFFATYRPPVPLDIFSSPVPPS-SSRDEVHLTDGVSYNYDCR-PIPASALKALLR 62
Query: 88 RNQTLIQSPGPQDSRDPPPLQ-LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
R + + D + L++V+ER+G A+ +D T+ + + G+
Sbjct: 63 RPKLAADGGATEADVDAGRVSGLVFVSERDGGLETLRIALRFDKDNKTKVFSLADVFGSG 122
Query: 147 VSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG 206
+ + L+ + GG + + + LIYVST E R+ W VY T L+TG
Sbjct: 123 DFSGTR---LEDSGCFGGGYKVGSRTV--DHSLIYVSTKEPVKDRRSPWTVVYKTNLRTG 177
Query: 207 LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF-LTRDGTQRVKI 265
T RLTP G D SPAVSPSGK AVAS+ +GW GE+E L TDI++ + + R +
Sbjct: 178 KTERLTPKGAYDLSPAVSPSGKKVAVASFRAEGWQGEIENLKTDIFVMNVEKPPLGRKLL 237
Query: 266 VENGGWPCWVDESTLFFHRKSE--------EDDWISVYKVILPQTGLVSTESVSIQRVTP 317
V++GGWP W E+ +FFHR S+ E W +V+++ + + E+V RVTP
Sbjct: 238 VKDGGWPSWGSENFVFFHRGSDKTLPSGMIETSW-AVFRL-----DVATGETV---RVTP 288
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDLVKNKFI-ELTRFVS 367
GL AFTPA + +AVAT R S YRHIE+FD+ + ++T+
Sbjct: 289 EGLDAFTPAAI--SETKVAVATIRQKSKFSDVRVEAQYRHIEIFDVAAGAPVQQITQKTR 346
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS 427
PK H NPF+ +RVGYH+ R + + ++SPL D+ LFR G FP+ S
Sbjct: 347 PKGDHYNPFVLDGGARVGYHRVRSDLLKPGDDVPRNFHKLESPLKDVGLFRVSGVFPTIS 406
Query: 428 PKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNA----FSTVW--DPVREAVVYTSGGPE 479
G ++AFV EF V+V +S G R V+ FST+W +P ++ V+Y GP
Sbjct: 407 KDGSKLAFVDNEFKAVWVADSQG--LRIVHVTKGPDSIFSTMWNQNPDKD-VLYVCKGPS 463
Query: 480 F-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------T 532
F A + E+ I NV DG S R+LT NNAFPS SPDG VFRSTR
Sbjct: 464 FNAGKPLEIHAIP-NVSSGDGHS--RQLTKGKFNNAFPSSSPDGTRFVFRSTRDHAKSEK 520
Query: 533 GYKNLYIM-DAEGGE-GY-----GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-- 583
+KNLYIM D E GE GY + RLT+G W+DT C WSP G+WI F+S RD P +
Sbjct: 521 KHKNLYIMEDQEFGEYGYDTVVPKVTRLTDGEWTDTHCQWSPSGDWIVFSSTRDKPATAA 580
Query: 584 --------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGIS 632
G F ++++ + T + +++ SG +G NHP FSPDG++I T+D +S
Sbjct: 581 PTDHGLDPGYFAVFMVKASDPTVVIRVVGSGDDLSGHVNHPVFSPDGRTIAVTADLAAVS 640
Query: 633 AEPISTP---HQYQPYGEIFKIKLD-----GSDLK-------------RLTQNSFEDGTP 671
A+PIS P H +PYG+IF + +D G D++ R+T + +E TP
Sbjct: 641 ADPISLPLFLHSVRPYGDIFAVDIDDILRLGDDVEKLKKIKDLKKKFHRITHSRYEYSTP 700
Query: 672 AW 673
W
Sbjct: 701 EW 702
>gi|326520960|dbj|BAJ92843.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 261/723 (36%), Positives = 372/723 (51%), Gaps = 97/723 (13%)
Query: 25 DSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGH-FPSPS-SP 81
D S R SI F R DIY+ P P++ +E +TDG S N NG P+ +
Sbjct: 4 DDSGRGSIAFFGTYRPPVPLDIYSCPADPPPSSREDERHLTDGVSYNQNGRAIPAAALKE 63
Query: 82 FLSFL-LRNQTLIQSPG--PQDSRDPPPLQLIYVTERN-GTSNIYYDAVYYDTRRNTRSR 137
L+FL +N L G P D+ L++V+ER+ G ++ V + +
Sbjct: 64 LLTFLGKKNPALAAECGATPDDAEKGRVAGLVFVSERDKGLETLHVALVRPNGEGAVKVL 123
Query: 138 TALEQHGAEV--STRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSW 195
+ + +GA+ TR++ D V GG K L+YVST E RT W
Sbjct: 124 SLGDVYGADTFGGTRLE----DSGCVAGG---FKVGARAVSHSLVYVSTKEPVTKRRTPW 176
Query: 196 AAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF- 254
VY T L G T RLTP G D SPAVSPSGK AVA++ W GE+E L+TDI +
Sbjct: 177 TVVYRTNLADGKTERLTPPGQYDVSPAVSPSGKMVAVANFRGNKWTGEIERLNTDIAVMN 236
Query: 255 ---LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEED--DWISVYKVILPQTGLVSTES 309
+ G +R ++ +GGWP W ++ +FFHR + E +W +V++ + V
Sbjct: 237 VDKTAQGGLRRKVLIRDGGWPTWGSDNVIFFHRGTGESPTNW-AVFRYDIATKATV---- 291
Query: 310 VSIQRVTPPGLHAFTP----------ATSPGNNKFIAVATRRPTSSYRHIELFDLVK-NK 358
RVTP + A TP AT ++ A+ T R + YRHIE+FD+ ++
Sbjct: 292 ----RVTPEAIDAMTPAAISESRVAVATIRQKSRQAAMTTPREEAQYRHIEIFDVSSPDQ 347
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL----LENIKSPLPDI 414
+++++ + PK H NPF++ SR+GYH+ R GNN + + SP D+
Sbjct: 348 PMQISQKIRPKGDHYNPFVADAGSRIGYHRVRTDDL-VIGNNLSAPTKSFDKMHSPHTDV 406
Query: 415 SLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNA----FSTVW--DP 466
LFR G FP+ S G ++AFV EF V++ ++ G R VY K FST W +P
Sbjct: 407 GLFRVSGVFPTISKDGAKLAFVDNEFKAVWLADTQG--LRVVYEKRGSNAVFSTAWNQNP 464
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA---VRRLTTNGKNNAFPSVSPDGK 523
++ +Y GP F S + ++I +I+ + G SA V+RLT NNAFPS +P G
Sbjct: 465 DKD-TLYVCVGPSF-SAAKPLEIYAIS--NASGPSAGRKVQRLTDGNFNNAFPSSNPQGD 520
Query: 524 WIVFRSTRTG-----YKNLYIM-DAEGGE--GYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
VFRSTR G +KNLYIM DAE GE + RLT+GPW+DT C+WSP G+W+ F+
Sbjct: 521 KFVFRSTRDGGKEKFHKNLYIMEDAEVGEFSEGTVTRLTDGPWTDTHCSWSPRGDWVVFS 580
Query: 576 SDRDNPGS---------GSFEMYLIH-PNGTGLRKLIQSGS--AGRANHPYFSPDGKSIV 623
S R+ P S G F +YL+ + T + +++QS + AG NHP FSPD +SIV
Sbjct: 581 STREMPPSAPEMAFLDAGYFAVYLVKVSDPTAVVRVVQSSATLAGHVNHPIFSPDMRSIV 640
Query: 624 FTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSD----------LKRLTQNSFEDGT 670
F SD +S EPIS P H +PYG+I + L +D R+T + +E T
Sbjct: 641 FASDLAAVSNEPISMPVFLHSVRPYGDILSVDLRDTDDIAKNKDIQEFHRITHSRYEYST 700
Query: 671 PAW 673
P W
Sbjct: 701 PTW 703
>gi|125544252|gb|EAY90391.1| hypothetical protein OsI_11968 [Oryza sativa Indica Group]
Length = 744
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 258/731 (35%), Positives = 361/731 (49%), Gaps = 128/731 (17%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTA-NEIKITDGESVNFNGHFPSPSSPFLSFL 86
SR SI F R D+++ P++ P++ +E+ +TDG S N + P P++ L L
Sbjct: 5 SRGSIAFFATYRPPVPLDVFSCPVAPPPSSPRDELHLTDGVSYNHSCR-PIPAAA-LRAL 62
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
L+ L D L++V+ER+ + A+ +D +
Sbjct: 63 LQRPKLASEATTADVDAGRITGLVFVSERDSGLETLHVALRFDGGK-------------- 108
Query: 147 VSTRVQVPLLDLNEVNGGV-----ISMKDKPILSGEY----------LIYVSTHENPGTP 191
QV + L ++ G + M+D G Y L+YVST E
Sbjct: 109 -----QVKVFGLADIFGAGGDFSGVRMEDSGCFGGGYRERGRAVDHTLVYVSTREPVAAR 163
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKG--WDGEVEMLST 249
R+ W VY T L+TG T RLTP G D SPAVSPSGK AVAS+ K WDGE+E L T
Sbjct: 164 RSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWDGEIEDLRT 223
Query: 250 DIYIF------LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTG 303
DIY+ L R G +V+N GWP W + +FFHR+ W V++
Sbjct: 224 DIYVMNVHKPPLGRTG----PVVKNAGWPTWGSDDVIFFHRRVGT-TW-GVFR------- 270
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDL 354
S + RVTP A TPA + +AVAT R S YRHIE+FD+
Sbjct: 271 -FSMSTGEEARVTPEEFDAVTPAAI--SETKVAVATIRRKSQFSDVRVEEQYRHIEIFDV 327
Query: 355 VK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR--------GGSTREDGNNQLLLE 405
+ +++T+ PKT H NPF+ SR+GYH+C+ GG NN
Sbjct: 328 ASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGYHRCKSEQLHQNNGGGGSSVANN---FH 384
Query: 406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK----NA 459
++SP D+ LFR G P+ S G ++AFV EF V++ +S G R VY K +
Sbjct: 385 KLQSPHKDVGLFRVSGVCPTISKDGSKLAFVDNEFKAVWLADSHG--LRVVYEKKGPNSV 442
Query: 460 FSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
FST W+ +Y GP F+++ + I +I+ G RRLT NNAFPS
Sbjct: 443 FSTAWNQNTALDTLYVCVGPSFSAD-KPLQIYAIHDVSALGGRQQRRLTAGASNNAFPSS 501
Query: 519 SPDGKWIVFRSTR------TGYKNLYIM-DAEGGE-GYG-LHRLTEGPWSDTMCNWSP-- 567
SPDG +VFRSTR +KNLY+M DA GE G G + RLT G W+DT C+WSP
Sbjct: 502 SPDGGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGEFGTGKVTRLTSGAWTDTHCSWSPRE 561
Query: 568 DGEWIAFASDRDNPGS----------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHPY 614
+WI F+S RD P + G F ++L+ + T + ++++S AG NHP
Sbjct: 562 GSDWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRASDPTVVVRVVRSADSVAGHVNHPV 621
Query: 615 FSPDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSDL---------KRLT 662
FSPDG+SI T+D +SA+PIS P H +PYG+IF + +D D+ R+T
Sbjct: 622 FSPDGRSIAVTADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRVT 681
Query: 663 QNSFEDGTPAW 673
+ +E+ TPAW
Sbjct: 682 HSRYENSTPAW 692
>gi|115453447|ref|NP_001050324.1| Os03g0403400 [Oryza sativa Japonica Group]
gi|29788823|gb|AAP03369.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108708691|gb|ABF96486.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113548795|dbj|BAF12238.1| Os03g0403400 [Oryza sativa Japonica Group]
Length = 744
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 257/732 (35%), Positives = 361/732 (49%), Gaps = 130/732 (17%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTA-NEIKITDGESVNFNGHFPSPSSPFLSFL 86
SR SI F R D+++ P++ P++ +E+ +TDG S N + P P++ L L
Sbjct: 5 SRGSIAFFATYRPPVPLDVFSCPVAPPPSSPRDELHLTDGVSYNHSCR-PIPAAA-LRAL 62
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
L+ L D L++V+ER+ + A+ +D +
Sbjct: 63 LQRPKLASEATTADVDAGRITGLVFVSERDSGLETLHVALRFDGGK-------------- 108
Query: 147 VSTRVQVPLLDLNEVNGGV-----ISMKDKPILSGEY----------LIYVSTHENPGTP 191
QV + L ++ G + M+D G Y L+YVST E
Sbjct: 109 -----QVKVFGLADIFGAGGDFSGVRMEDSGCFGGGYRERGRAVDHTLVYVSTREPVAAR 163
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKG--WDGEVEMLST 249
R+ W VY T L+TG T RLTP G D SPAVSPSGK AVAS+ K WDGE+E L T
Sbjct: 164 RSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWDGEIEDLRT 223
Query: 250 DIYIF------LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTG 303
DIY+ L R G +V+N GWP W + +FFHR+ W V++
Sbjct: 224 DIYVMNVHKPPLGRTG----PVVKNAGWPTWGSDDVIFFHRRVGT-TW-GVFR------- 270
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDL 354
S + RVTP A TPA + +AVAT R S YRHIE+FD+
Sbjct: 271 -FSMSTGEEARVTPEEFDAVTPAAI--SETKVAVATIRRKSQFSDVRVEEQYRHIEIFDV 327
Query: 355 VK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR--------GGSTREDGNNQLLLE 405
+ +++T+ PKT H NPF+ SR+GYH+C+ GG NN
Sbjct: 328 ASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGYHRCKSEQLHQNNGGGGSSVANN---FH 384
Query: 406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK----NA 459
++SP D+ LFR G P+ S G ++AFV EF V++ +S G R VY K +
Sbjct: 385 KLQSPHKDVGLFRVSGVCPTISKDGSKLAFVDNEFKAVWLADSHG--LRVVYEKKGPNSV 442
Query: 460 FSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
FST W+ +Y GP F+++ + I +I+ G RRLT NNAFPS
Sbjct: 443 FSTAWNQNTALDTLYVCVGPSFSAD-KPLQIYAIHDVSALGGRQQRRLTAGASNNAFPSS 501
Query: 519 SPDGKWIVFRSTR------TGYKNLYIM-DAEGGEGYG---LHRLTEGPWSDTMCNWSP- 567
SPDG +VFRSTR +KNLY+M DA GE +G + RLT G W+DT C+WSP
Sbjct: 502 SPDGGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGE-FGTSKVTRLTSGAWTDTHCSWSPR 560
Query: 568 -DGEWIAFASDRDNPGS----------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHP 613
+WI F+S RD P + G F ++L+ + T + ++++S AG NHP
Sbjct: 561 EGSDWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRASDPTVVVRVVRSADSVAGHVNHP 620
Query: 614 YFSPDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSDL---------KRL 661
FSPDG+SI T+D +SA+PIS P H +PYG+IF + +D D+ R+
Sbjct: 621 VFSPDGRSIAVTADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRV 680
Query: 662 TQNSFEDGTPAW 673
T + +E+ TPAW
Sbjct: 681 THSRYENSTPAW 692
>gi|125601237|gb|EAZ40813.1| hypothetical protein OsJ_25290 [Oryza sativa Japonica Group]
Length = 594
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 230/666 (34%), Positives = 332/666 (49%), Gaps = 133/666 (19%)
Query: 31 SIIFTTLGRSDYAFDIYTLPISDRPTTAN-EIKITDGESVNFNGHFPSPSSPFLSFLLRN 89
+I+F T+G +++ FD+++ + P + E + TDG SVNFN F
Sbjct: 6 TIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQF-------------- 51
Query: 90 QTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVST 149
D ++ +V+ER G + ++ R R EQ + T
Sbjct: 52 ------------VDDGGEEVAFVSERGGAAGLF------------RCRPGPEQRAEPLPT 87
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR 209
V G + D+P + G L +VS HE P P SWAAVY+TE+ + T
Sbjct: 88 -----------VEGSL--FHDRPTVRGGRLYFVSAHEQPPAPFRSWAAVYATEIGSKETV 134
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
R++P GV D SPAVS SG+ AVASYG++ W + +L T++ +F D +RV +V G
Sbjct: 135 RVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFRAADPARRVVVVGRG 194
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT-- 327
GWP W E T+FFHR + +D W SV++V + L T +RVTPPGLH FTPA
Sbjct: 195 GWPTWHGEGTVFFHRVA-DDGWWSVFRVDVSPETLEPTGGE--RRVTPPGLHCFTPAAVG 251
Query: 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
G ++IAVATRR + RH+ELFDL F LT ++P+ HH NPF SP RVGYH
Sbjct: 252 RGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHYNPFFSPSGDRVGYH 311
Query: 388 KCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA----FVEFPGVYV 443
+ RG R D + L+ ++SP+ + + R G+FPSFSP +A F + PGV +
Sbjct: 312 RFRGAGARGD-SVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLAMNGDFFKTPGVTI 370
Query: 444 VNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD------D 496
+ SDG+ R + + N F T W P V++TS GP F + + V I + D
Sbjct: 371 LRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRIARLEFDAGELTTG 430
Query: 497 VDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVF-----RSTRTGYKNLYIMDAEGGEGYG 549
D V+A ++ T N+AFP+VSP GKW+VF R +G + +++ G
Sbjct: 431 RDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRIYLVRPDGSGLRRVHVAGPAGSAAAD 490
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R+ +C +SPD W+ F
Sbjct: 491 RERINH------VC-FSPDSRWLLF----------------------------------- 508
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
T+++GG+ AEPIS P+Q+QPYG+++ +LDGS L RLT N++E+G
Sbjct: 509 ---------------TANFGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRLTCNAYENG 553
Query: 670 TPAWGP 675
TPAWGP
Sbjct: 554 TPAWGP 559
>gi|326515644|dbj|BAK07068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 733
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 260/731 (35%), Positives = 364/731 (49%), Gaps = 116/731 (15%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPF---LS 84
SR SI F T R DI++ P + P+ +E+ +TDG S N NG P P++ L+
Sbjct: 4 SRGSIAFFTTYRPAVPLDIFSCPAT--PSPDDELSLTDGVSYNQNGR-PIPAAALKELLT 60
Query: 85 FL-LRNQTLIQSPG--PQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE 141
FL +N L G P D+ L++V+ER+ + A+ R T S
Sbjct: 61 FLGKKNPGLAAECGATPDDAGKGRVAGLLFVSERDNGLETLHVAL-----RCTASGAG-- 113
Query: 142 QHGAEVSTRVQVPLLDLNEVNG----GVISMKDKPILSGEY------LIYVSTHENPGTP 191
+ V +L L +V G G + M+D ++G + L+YVST E
Sbjct: 114 ------GVKAAVKVLRLADVYGADAFGGVRMEDSGCVAGGFDGVGHSLVYVSTKEPAKKR 167
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
R W VY T L G T RLTP D SPAVSPSGK AVA++ W GE+E L TDI
Sbjct: 168 RAPWTVVYKTSLADGKTERLTPPDQYDLSPAVSPSGKMVAVANFRWNQWTGEIEHLKTDI 227
Query: 252 YIF----LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVST 307
+ + G +R ++ +GGWP W ++ +FFHR ++ +LP +G+V T
Sbjct: 228 VVMNVDRWAQGGLRRKILIRDGGWPTWGSDNIIFFHRGVDK---------MLP-SGMVQT 277
Query: 308 E---------SVSIQRVTPPGLHAFTPATSPGNNKFIAVAT----------RRPTSSYRH 348
+ + RVTP G A TPA N + VAT R + YRH
Sbjct: 278 DWGVFRYDMTTKETIRVTPLGFDAVTPAAV--NETTVVVATIRQKSEKTGAHREVAEYRH 335
Query: 349 IELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN- 406
IE+FD+ K +++T P+ H NPFI + VGYH+CR + E+ N + N
Sbjct: 336 IEIFDVTAPYKPVQITIKSRPEVDHYNPFILHGGNCVGYHRCRTDNLLENNGNDGVQRNF 395
Query: 407 --IKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY----F 456
++SP + LFR G FP+ S G ++AFV+ F V++ +S G R+VY
Sbjct: 396 HKLQSPPSHAGVGLFRVSGVFPTTSKDGSKLAFVDNNFKAVWLADSHGI--RRVYEMRGT 453
Query: 457 KNAFSTVWDPVREA-VVYTSGGPEF-ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514
+ FST W+ ++ +Y GP F A + E+ IS NV G V RLT NNA
Sbjct: 454 NSIFSTSWNKNQDRDTLYVCIGPSFSAGKPLEIYAIS-NVSGPRGGRKVERLTDGHFNNA 512
Query: 515 FPSVSPDGKWIVFRSTRTG----YKNLYIM-DAEGGE--GYGLHRLTEGPWSDTMCNWSP 567
FPS +PDG VFRSTR G +KNLYIM DAE GE + RLT GPW+DT C+WSP
Sbjct: 513 FPSSNPDGTKFVFRSTRDGGAELHKNLYIMEDAEVGEFSEGTVRRLTNGPWTDTHCSWSP 572
Query: 568 DGEWIAFASDRDNPGS---------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHPYF 615
+WI F+S RD GSF ++++ + T + ++++S AG HP F
Sbjct: 573 KNDWIVFSSSRDKAAGAPKRDILDPGSFAVFMVMASDPTVVVRVMKSSDSVAGHVTHPMF 632
Query: 616 SPDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSD----------LKRLT 662
SPD +SIV +D +S EPIS P H +PYG+IF + L +D R+T
Sbjct: 633 SPDMRSIVVAADLAAVSTEPISMPQFLHSVRPYGDIFSVDLRDTDDMSKNKDIKEFHRIT 692
Query: 663 QNSFEDGTPAW 673
+ +E TP W
Sbjct: 693 HSRYEYATPEW 703
>gi|125586595|gb|EAZ27259.1| hypothetical protein OsJ_11196 [Oryza sativa Japonica Group]
Length = 744
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 255/729 (34%), Positives = 359/729 (49%), Gaps = 124/729 (17%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTA-NEIKITDGESVNFNGHFPSPSSPFLSFL 86
SR SI F R D+++ P++ P++ +E+ +TDG S N + P P++ L L
Sbjct: 5 SRGSIAFFATYRPPVPLDVFSCPVAPPPSSPRDELHLTDGVSYNHSCR-PIPAAA-LRAL 62
Query: 87 LRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
L+ L D L++V+ER+ + A+ +D +
Sbjct: 63 LQRPKLASEATTADVDAGRITGLVFVSERDSGLETLHVALRFDGGK-------------- 108
Query: 147 VSTRVQVPLLDLNEVNGGV-----ISMKDKPILSGEY----------LIYVSTHENPGTP 191
QV + L ++ G + M+D G Y L+YVST E
Sbjct: 109 -----QVKVFGLADIFGAGGDFSGVRMEDSGCFGGGYRERGRAVDHTLVYVSTREPVAAR 163
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKG--WDGEVEMLST 249
R+ W VY T L+TG T RLTP G D SPAVSPSGK AVAS+ K WDGE+E L T
Sbjct: 164 RSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWDGEIEDLRT 223
Query: 250 DIYIF------LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTG 303
DIY+ L R G +V+N GWP W + +FFHR+ W V++
Sbjct: 224 DIYVMNVHKPPLGRTG----PVVKNAGWPTWGSDDVIFFHRRVGT-TW-GVFR------- 270
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTS---------SYRHIELFDL 354
S + RVTP A TPA + +AVAT R S YRHIE+FD+
Sbjct: 271 -FSMSTGEEARVTPEEFDAVTPAAI--SETKVAVATIRRKSQFSDVRVEEQYRHIEIFDV 327
Query: 355 VK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-TREDGNNQLLLEN----IK 408
+ +++T+ PKT H NPF+ SR+G R S TR + + N ++
Sbjct: 328 ASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGSTGARASSFTRITVEARSSVANNFHKLQ 387
Query: 409 SPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK----NAFST 462
SP D+ LFR G P+ S G ++AFV EF V++ +S G R VY K + FST
Sbjct: 388 SPHKDVGLFRVSGVCPTISKDGSKLAFVDNEFKAVWLADSHG--LRVVYEKKGPNSVFST 445
Query: 463 VWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
W+ +Y GP F+++ + I +I+ G RRLT NNAFPS SPD
Sbjct: 446 AWNQNTALDTLYVCVGPSFSAD-KPLQIYAIHDVSALGGRQQRRLTAGASNNAFPSSSPD 504
Query: 522 GKWIVFRSTR------TGYKNLYIM-DAEGGEGYG---LHRLTEGPWSDTMCNWSP--DG 569
G +VFRSTR +KNLY+M DA GE +G + RLT G W+DT C+WSP
Sbjct: 505 GGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGE-FGTSKVTRLTSGAWTDTHCSWSPREGS 563
Query: 570 EWIAFASDRDNPGS----------GSFEMYLIHPNG-TGLRKLIQSGS--AGRANHPYFS 616
+WI F+S RD P + G F ++L+ + T + ++++S AG NHP FS
Sbjct: 564 DWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRASDPTVVVRVVRSADSVAGHVNHPVFS 623
Query: 617 PDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSDL---------KRLTQN 664
PDG+SI T+D +SA+PIS P H +PYG+IF + +D D+ R+T +
Sbjct: 624 PDGRSIAVTADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRVTHS 683
Query: 665 SFEDGTPAW 673
+E+ TPAW
Sbjct: 684 RYENSTPAW 692
>gi|357138465|ref|XP_003570812.1| PREDICTED: uncharacterized protein LOC100837266 [Brachypodium
distachyon]
Length = 728
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 228/667 (34%), Positives = 339/667 (50%), Gaps = 63/667 (9%)
Query: 32 IIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQT 91
I+F+ + +FDI++ P+S P++ E+ +TDG S N+NG P++ L LL+N
Sbjct: 8 IVFSRTNGTLVSFDIFSSPLS--PSSTYELPLTDGVSYNYNGQAIPPAA--LKTLLKNPK 63
Query: 92 LIQSPGPQDSRDPP--PLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTAL-EQHGAEVS 148
L D+ LI+V+ER+ Y A++++ N AL + GA
Sbjct: 64 LADKADANDADIDAGNVSGLIFVSERDNGLETLYIALHFNAGSNILKVIALADIFGAADF 123
Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
+ V+ L+ + GG S+ + + LIYVST E R+ W VY T L TG T
Sbjct: 124 SGVR---LEDSGCIGGGYSVGCRTV--DHCLIYVSTKEAAQERRSPWTVVYKTNLTTGKT 178
Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQ--RVKIV 266
RLTP GV D SPAVSPSG AVAS+ +K W+GE+E L TDIY+ Q R ++
Sbjct: 179 ERLTPQGVFDLSPAVSPSGMMVAVASFESKSWNGELENLKTDIYVMNVDSEGQLGRKLLI 238
Query: 267 ENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ---RVTPPGLHAF 323
+NGGWP W ++ +FFHR +E+ S ++++ V ++S Q +VTP L A
Sbjct: 239 KNGGWPSWGSDNIIFFHRGTEK-TLPSTSRMVVETAWGVFRYNISTQETVQVTPEELDAM 297
Query: 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSR 383
TPA +A + YRHIE+FD+ +++T+ SP+ H NPF+ R
Sbjct: 298 TPAAISETKVAVATIRQNVPVQYRHIEIFDMNAASPVQITQKTSPECDHYNPFMLDGGGR 357
Query: 384 VGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYV 443
+GYH+ R + ++SP D+ L+R G FP+ S G ++AFV+ V
Sbjct: 358 IGYHRSRTSRYHDK------FYKLESPSKDVGLYRASGMFPAISKDGSKLAFVDDKSKVV 411
Query: 444 VNSDGSNRRQVYFKNAFSTVWDPV-----REAVVYTSGGPEFASESSEVDIISI-NVDDV 497
+D R VY + +V+ PV + ++Y GP S ++I SI N+
Sbjct: 412 WLADSQGLRIVYEQTGSDSVFSPVWNQDSDKDILYICVGPSLESH-RPLEIYSITNISSS 470
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST-----------RTGYKNLYIM-DAEGG 545
DG VR+LT NNAFPS SPDG +VF+ST R ++NL+IM +A G
Sbjct: 471 DGGQEVRQLTCGKFNNAFPSSSPDGGKLVFQSTRDFWPKKAEDRRKKHRNLHIMLNAAAG 530
Query: 546 ---EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG------- 595
E + RLT+G W+DT C WSP G+WI F S RD + + L +P G
Sbjct: 531 ELDENCWVTRLTKGSWTDTQCQWSPRGDWIVFLSTRDRQLTSNHADELEYPVGYLSVFLV 590
Query: 596 -----TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
+ +++ SG+ P FSPDG+SI T+D+ +S +PIS P + IF
Sbjct: 591 KAYDPMVVVRIMDSGA-----DPVFSPDGRSIAVTADFSAVSVDPISLPKLARLCSNIFL 645
Query: 651 IKLDGSD 657
+ ++ D
Sbjct: 646 VDINTDD 652
>gi|115488384|ref|NP_001066679.1| Os12g0431300 [Oryza sativa Japonica Group]
gi|77554873|gb|ABA97669.1| expressed protein [Oryza sativa Japonica Group]
gi|113649186|dbj|BAF29698.1| Os12g0431300 [Oryza sativa Japonica Group]
gi|125536449|gb|EAY82937.1| hypothetical protein OsI_38155 [Oryza sativa Indica Group]
gi|125579178|gb|EAZ20324.1| hypothetical protein OsJ_35933 [Oryza sativa Japonica Group]
Length = 777
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 246/746 (32%), Positives = 356/746 (47%), Gaps = 125/746 (16%)
Query: 28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTA-NEIKITDGESVNFNGHFPSPSSPF---L 83
SR SI F R DI++ P + P +A +E+ +TDGES N NG P P++ L
Sbjct: 4 SRGSIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQ-PIPAAALKELL 62
Query: 84 SFL-LRNQTLIQSPG--PQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTAL 140
+FL +N L G P+D+ L++V+ER+ + A+ +
Sbjct: 63 TFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRF------------ 110
Query: 141 EQHGAEVSTRVQVPLLDLNEVNG----GVISMKDKPILSGEY----------LIYVSTHE 186
V+ QV +L L + G G + M+D ++G + L+YVST
Sbjct: 111 ------VAGGKQVKVLSLGNIYGADTFGGVRMEDSGCVAGGFKVGRTTVGHSLVYVSTKA 164
Query: 187 NPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEM 246
RT W VY T+L G T RLTP G D SPAVSPSGK AVA++ W+GE+E
Sbjct: 165 PVKARRTPWTVVYRTDLADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIEN 224
Query: 247 LSTDIYIFLTRDGTQ----RVKIVENGGWPCWVDESTLFFHR------KSEEDDWISVYK 296
L TDI + Q R ++++GGWP W ++ +FFHR S W V++
Sbjct: 225 LKTDIVVMNVDKRAQGRSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARW-GVFR 283
Query: 297 VILPQTGLVSTESVSIQRVTPPGLH--AFTPATSPGNNKFIAVATRRPTSSYRHIELFDL 354
+ SI +TP + AT +K + + R + YRHIE+FD
Sbjct: 284 FDIAAGKEERVTDESIDAMTPAAISETQVAVATVREKSKQVLMKVERVVTQYRHIEIFDT 343
Query: 355 VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN--------QLLLEN 406
+ +T+ P+ H NPF+ +RVGYH+CR + N Q +
Sbjct: 344 ASKTSVPITQKTRPEGDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDK 403
Query: 407 IKSP--LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY----FKN 458
++ P D+ LFR G FPS S G ++AFV EF V++ +DG R VY K+
Sbjct: 404 VQPPESHADVGLFRVTGVFPSVSKNGKKLAFVDNEFKAVWL--ADGRGLRVVYKVRATKS 461
Query: 459 AFSTVWDPVREA-VVYTSGGPEFASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515
FST W+ + +Y GP F+ + + I +++ +D + + LT N AF
Sbjct: 462 VFSTSWNQNDDLDTLYVCEGPAFSIDKPVQIMRIPNVSREDYENMETF-PLTDEEYNCAF 520
Query: 516 PSVSPDGKWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP- 567
PS + +G +VFRS+R +KNLYI+DAE GE G+ LT+GPW+DT C+WSP
Sbjct: 521 PSTNAEGTKLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPR 580
Query: 568 -DGEWIAFASD----------RDNPGS------GSFEMYLIHPNGTGLRK--------LI 602
+WI F+S +D P G F +YL+ N ++K +I
Sbjct: 581 EGCDWIVFSSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVI 638
Query: 603 QSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKL---- 653
S AG NHP FSPD KSIVF +D +SA+PIS P H +PYG+IF + L
Sbjct: 639 HSAPTIAGHINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTT 698
Query: 654 ------DGSDLKRLTQNSFEDGTPAW 673
D + R+T + +E TP W
Sbjct: 699 DMAKNRDIQEFHRITHSRYEYSTPTW 724
>gi|242094216|ref|XP_002437598.1| hypothetical protein SORBIDRAFT_10g030220 [Sorghum bicolor]
gi|241915821|gb|EER88965.1| hypothetical protein SORBIDRAFT_10g030220 [Sorghum bicolor]
Length = 769
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 237/729 (32%), Positives = 355/729 (48%), Gaps = 99/729 (13%)
Query: 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
R SI R +DI++ PI ++E+ ++DG S N NG P P++ + + +
Sbjct: 3 RGSIAAFASYRPPCQWDIFSCPIPPTGGGSDEVHLSDGVSYNHNGR-PIPAAALKALIAK 61
Query: 89 NQTLIQSPGP--QDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAE 146
L G D L++V+ER + A+ +D + S + +GA+
Sbjct: 62 KPELAAECGATADDVDTGRATGLVFVSEREEGLETLHVALRFDGKVKVLSLADI--YGAD 119
Query: 147 VSTRVQVPLLDLNEVNGGVI-SMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT 205
V+ + D GG+ D P + +YVST + RT W VY T L+T
Sbjct: 120 TFGGVR--MEDSGCFGGGLAPDAADDPCI-----VYVSTKKPVEKRRTPWTVVYRTNLRT 172
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLT--------- 256
G T RLTP G D SPAVSPSGK AVA + + W GE+E L TDI + +
Sbjct: 173 GETVRLTPDGEYDLSPAVSPSGKRVAVAKFSDNKWSGEIEHLKTDIVVMIMNVDRNAQGG 232
Query: 257 -RDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS--IQ 313
+ R +++ GWP W ++ +FFHR ++ D + + P G+ + + +
Sbjct: 233 GKPLDDRAVCIQDAGWPSWGSDNVIFFHRAVDKKDDPDSDR-LTPHWGVYRYDIAAGRTE 291
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSS----------YRHIELFDL-----VKNK 358
VTP ++A TPA + +AVAT R ++ +RHIE+FD+ +
Sbjct: 292 PVTPGNIYAMTPAAI--SETKVAVATIRQRTNQMGGARDADMFRHIEIFDVPGPGGTQQP 349
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED---GNNQLLLENIKSPLPDIS 415
+++T+ V PK H NPF+ + +GYH+ E+ N + ++S D+
Sbjct: 350 SVKITQVVWPKADHYNPFVLHGGACIGYHRATTERLLEETGKSNVARSFDKLQSVHKDVD 409
Query: 416 LFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK---NAFSTVW--DPVR 468
+FR G FP+ S G ++AFV EF V+V + R ++ + FST W DP +
Sbjct: 410 VFRVSGVFPTVSSDGSKLAFVDNEFKAVWVADEPRGLRVVWEWRRPNSVFSTAWNHDPDK 469
Query: 469 EAVVYTSGGPEFASESSEVDIISI-NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
+ V+Y GP F+++ S ++I +I N + +R+LT G NNAFPS +P G IVF
Sbjct: 470 D-VLYVCVGPAFSAD-SRLEIHAIFNASGDESQRQLRKLTAGGFNNAFPSSNPAGTKIVF 527
Query: 528 RSTRTG---------YKNLYIM-DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
RST+ KNLYIM DA GE G+ RLT+G W+DT C WSP G+WI F+S
Sbjct: 528 RSTKDAPPPPPGGFRQKNLYIMEDAMEGESAGVTRLTDGDWTDTHCQWSPSGDWIVFSSS 587
Query: 578 RDNPGS----------GSFEMYLIHPNG-TGLRKLIQS----------GSAGRANHPYFS 616
R P G F +YL++P + +++ S G NHP FS
Sbjct: 588 RHKPDGAPKTDNFLDPGYFGVYLVNPASPKAVVRVMTSALPPPVPTNVAGLGHVNHPMFS 647
Query: 617 PDGKSIVFTSDYGGISAEPISTP---HQYQPYGEIFKIKLDGSDL---------KRLTQN 664
PDG+SIV T+D +S EPIS P H +PYG+IF +D D+ R+T +
Sbjct: 648 PDGRSIVVTADLAAVSVEPISMPMFLHSVRPYGDIFSFDIDPVDMDKNKDIQKFHRVTHS 707
Query: 665 SFEDGTPAW 673
+E TP W
Sbjct: 708 RYEYATPVW 716
>gi|357151442|ref|XP_003575792.1| PREDICTED: uncharacterized protein LOC100821131 [Brachypodium
distachyon]
Length = 730
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 245/748 (32%), Positives = 365/748 (48%), Gaps = 94/748 (12%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHF--PSPSSPFL 83
+ S SI F R DI++LP + +P++A E ++TDG S N NG P+P L
Sbjct: 2 AHSGGSIAFFGTFRPLVPLDIFSLPANPQPSSA-EQRLTDGISYNHNGRAIPPAPLKELL 60
Query: 84 SFLLRNQTLIQSPG--PQDSRDPPPLQLIYVTER-NGTSNIYYDAVYYDTRRNTRSRTAL 140
+FL + ++ G P D ++ V+ER NG ++ DT T + +L
Sbjct: 61 AFLAKKDPPVKCGGATPDDVDSGLVTGIVLVSERDNGLETLHVALSVKDT--PTPTVLSL 118
Query: 141 EQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYS 200
T V + D GG ++ + + G L+YVST E RT W AVY
Sbjct: 119 RDIYGHDDTFSGVRMEDSGCFAGG-FTVGTRAV--GHSLVYVSTKEPAKARRTPWTAVYK 175
Query: 201 TELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF----LT 256
T L+ G T RLTP D +PAVSPSGK AVA++ W GE++ ++TDI +
Sbjct: 176 TSLEDGSTERLTPQYQYDINPAVSPSGKRVAVANFRFNQWTGEIDRINTDIVVMNVDRQA 235
Query: 257 RDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT 316
+ G +R ++++GGWP W ++ +FFHR ++ + Q + I +T
Sbjct: 236 QGGLRRRVVIKDGGWPTWGSDNVIFFHRGK----FVPGRRQPCWQVFRYDLTTNKIDAMT 291
Query: 317 PPGLHAFTPATSPGNNKFIAVATRRP-------------TSSYRHIELFDLVKNKFIELT 363
P + A TPA + NK ATR P +R IE+++ K +
Sbjct: 292 PENIDAMTPA-AIDENKVAVAATRAPFGLQAVAPEQRTAVGQFRQIEIYE--AGKPADPV 348
Query: 364 RFVSPKTHHLNPFI---SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFR 418
S KT H NPF+ ++ VG+H+CR DG+ + +KSP D++L+R
Sbjct: 349 VITSNKTDHYNPFLLQRGSSNTSVGFHRCR------DGDAEKKFSMLKSPPTHQDVALYR 402
Query: 419 FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVV 472
G FP+F+ KG +A+V +F VYV + G R VY S W+ + +
Sbjct: 403 GAGVFPTFTNKGSELAYVDNDFRTVYVADG-GVEPRAVYKHENSNKILSVTWNQ-KHDTL 460
Query: 473 YTSGGPEFASESSEVDIISI-NVDDVD-GVSAVRRLTTNGK--NNAFPSVSPDGKWIVFR 528
Y G F E+ I +I NV D D + ++LT + K NNAFPS + +G +VFR
Sbjct: 461 YCCIGTAFT--GGEIQIWAIYNVCDEDTNKQSWKQLTDDTKKYNNAFPSSNKEGDKLVFR 518
Query: 529 ST--RTG----YKNLYIMD--AEGGEGYG-LHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
S+ R+G +KNLYIM+ EG G + +LT+G W+DT C WSP +WI F+S RD
Sbjct: 519 SSCDRSGGDNKFKNLYIMEDATEGDSSAGKVTQLTKGDWTDTHCCWSPTDDWIVFSSSRD 578
Query: 580 N--PG-------SGSFEMYLI-HPNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSD 627
PG +G F ++++ + + + + +++ S AG HP FSPD KSIV TSD
Sbjct: 579 RAPPGTDPAILDAGCFSIFMVNYKDPSVVVRVMHSDMSLAGHVCHPVFSPDRKSIVVTSD 638
Query: 628 YGGISAEPISTP---HQYQPYGEIFKIKL----------DGSDLKRLTQNSFEDGTPAWG 674
+SA+P S P H +PYG+IF IKL D + R+T + +E+ TP W
Sbjct: 639 VAAVSADPASLPIFIHSVRPYGDIFTIKLRDPDCLEKNGDIVEFDRITHSRYENSTPTWT 698
Query: 675 PRFIRPVDVEEVKNEQCAFEDCHWLNET 702
P D+ A C +L+ T
Sbjct: 699 ELAADPNDLLTSSRTGHAAGPCPFLHST 726
>gi|125547561|gb|EAY93383.1| hypothetical protein OsI_15178 [Oryza sativa Indica Group]
Length = 470
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 137/170 (80%), Gaps = 3/170 (1%)
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G+KNLYIMDA+ GE G+ RLTEGPWSDTMCNWSP EWIAFASDR PGSGSF + ++H
Sbjct: 287 GHKNLYIMDAKDGEAGGIRRLTEGPWSDTMCNWSPHDEWIAFASDRHAPGSGSFAI-MVH 345
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
PNGTGLR+++ SG GR NHP+FS D KS+VFTSDY +SAEP+S PH YQPYGEI+ +
Sbjct: 346 PNGTGLRRVVHSGDGGRTNHPWFSSDFKSLVFTSDYAAVSAEPVSNPHHYQPYGEIYTVD 405
Query: 653 LDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEV--KNEQCAFEDCHWLN 700
+DGS+++RLT NSFEDGTP+W P F+ P DV E + +CAF+DCHWLN
Sbjct: 406 IDGSNIRRLTHNSFEDGTPSWTPYFLDPRDVGETLQASGRCAFQDCHWLN 455
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 85/121 (70%), Gaps = 7/121 (5%)
Query: 308 ESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTRF 365
E+ S++R+TP G HAFTPA SPG +AVATR S YRHIE+ D+ KN + E+TR
Sbjct: 151 EAASVERITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTRP 210
Query: 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSF 423
V+P+ H NPFIS D +RVGYH+C G R +G++ LLLENIKSP P SLFR DGSF
Sbjct: 211 VAPRVHRFNPFISLDGARVGYHQCWG---RGNGDSPLLLENIKSPGPADTFSLFRIDGSF 267
Query: 424 P 424
P
Sbjct: 268 P 268
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 85/203 (41%), Gaps = 53/203 (26%)
Query: 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRP-TTANEIKITDGESVNFNGHFPSPSSPFLS 84
S+S +I+FTTLGRS Y F I++LP+S P A E+ +TDG SVN+NG+F
Sbjct: 20 SASGGTIVFTTLGRSRYEFSIFSLPLSPSPHNPATELYLTDGVSVNYNGNF--------- 70
Query: 85 FLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHG 144
P D +++V++RNG+ N+Y V +R AL
Sbjct: 71 ------------APTSHSD----SILFVSKRNGSLNLYLSPVP-SSRHEALEAAALS--- 110
Query: 145 AEVSTRVQVPLLDLNEVNG--GVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTE 202
PLL N G S P LS T P R AA
Sbjct: 111 ---------PLLPGNPSRSRTGYRSHPTAPTLS--------TSPPPSPLRNRAAA----G 149
Query: 203 LKTGLTRRLTPYGVADFSPAVSP 225
++ R+TP G F+PA SP
Sbjct: 150 VEAASVERITPRGFHAFTPAASP 172
>gi|326522959|dbj|BAJ88525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 555
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 186/538 (34%), Positives = 270/538 (50%), Gaps = 51/538 (9%)
Query: 25 DSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTT-ANEIKITDGESVNFNGH-FPSPS-SP 81
D S R SI F R DIY+ P + P++ +E+ +TDG S N NG P+P+
Sbjct: 4 DDSGRGSIAFFGTYRPPVPLDIYSCPANPPPSSREDELHLTDGVSYNQNGRAIPAPALKD 63
Query: 82 FLSFL-LRNQTLIQSPG--PQDSRDPPPLQLIYVTER-NGTSNIYYDAVYYDTRRNTRSR 137
L+FL +N L G P D+ L++V+ER NG ++ V +
Sbjct: 64 LLAFLGKKNPGLATECGATPDDAEKGRVAGLVFVSERDNGLETLHVALVRPNGEGGAVKV 123
Query: 138 TAL-EQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWA 196
+L + +GA+ + L D + GG K G L+YVST E RT W
Sbjct: 124 LSLGDVYGADTFGGSR--LEDSGCIAGG---FKVGARAVGHLLVYVSTKEPVTRRRTPWT 178
Query: 197 AVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF-- 254
VY T L G T RLTP G D SPAVSPSGK AVA++ W GE+E L+TDI I
Sbjct: 179 VVYRTNLGDGKTERLTPPGQYDVSPAVSPSGKMVAVANFRGNRWTGEIERLNTDIVIMNV 238
Query: 255 --LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEED--DWISVYKVILPQTGLVSTESV 310
+ G R ++ +GGWP W ++ +FFHR + E +W +V++ + V V
Sbjct: 239 DKAAQGGRGRKILIRDGGWPTWGSDNVIFFHRGTGESPTNW-AVFRYDIATKKTVQVTPV 297
Query: 311 SIQRVTPPGLHAFTPATSPGNNKFI--AVATRRPTSSYRHIELFDLVKNK-FIELTRFVS 367
+I +TP + A + K + A+ T R + YRHIE+FD+ + +++++ +
Sbjct: 298 NIDAMTPAAISETRVAVATIRQKSMQAAMTTPREDAEYRHIEIFDVASPEPPVQISQKIR 357
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTRED---GNNQLL----LENIKSPLPDISLFRFD 420
PK H NPF+ SR+GYH+ R +D GNN + I SP D+ LFR
Sbjct: 358 PKADHYNPFVVDGGSRIGYHRVR----TDDLLIGNNVAAPTKSFDKIHSPHIDVGLFRVT 413
Query: 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK----NAFSTVW--DPVREAVV 472
G FP+ S G ++AFV EF V++ ++ G R VY K + FST W +P ++ +
Sbjct: 414 GVFPTISKDGSKLAFVDNEFKAVWLADTQG--LRVVYEKRGPNSVFSTAWNQNPDKD-TL 470
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSA---VRRLTTNGKNNAFPSVSPDGKWIVF 527
Y GP F S S ++I +I+ + G SA V+RLT NNAFPS + G + F
Sbjct: 471 YVCVGPSF-SASKPLEIYAIS--NASGPSAGRKVQRLTAGNFNNAFPSSNAQGDKLCF 525
>gi|361068097|gb|AEW08360.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|376337990|gb|AFB33551.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
gi|376337992|gb|AFB33552.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
Length = 152
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 108/153 (70%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD R VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S ++ T NNAFPS SPDGK++VFRS RTG+KNLYI
Sbjct: 60 ERTTVDIVAIYNADKEGISESEISYKILTKKDNNAFPSPSPDGKFVVFRSGRTGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMCNWSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|224056417|ref|XP_002298846.1| predicted protein [Populus trichocarpa]
gi|222846104|gb|EEE83651.1| predicted protein [Populus trichocarpa]
Length = 129
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 101/127 (79%), Gaps = 10/127 (7%)
Query: 151 VQVPLLDLNEVNGGVISMKDKPILSGEYLI------YVSTHENPGTPRTSWAAVYSTELK 204
++VPLL+ G ISMKDKP + G+YL+ Y+STHENPG PRTSWAAVY+TEL
Sbjct: 5 IKVPLLN----GKGGISMKDKPTVIGDYLVKKEILVYMSTHENPGEPRTSWAAVYATELT 60
Query: 205 TGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK 264
T +T+RLTP+G+ADFS AVSPSG YT VASYG +GW GEVE LSTDIYIFLTRDG+ RVK
Sbjct: 61 TRVTQRLTPHGIADFSLAVSPSGVYTVVASYGERGWSGEVEELSTDIYIFLTRDGSNRVK 120
Query: 265 IVENGGW 271
+VE+G W
Sbjct: 121 VVEHGDW 127
>gi|376337998|gb|AFB33555.1| hypothetical protein 2_7121_02, partial [Pinus mugo]
Length = 152
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 108/153 (70%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD R VVYTS GP F S
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFES 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S ++ T NNAFPS SPDGK++VFRS RTG+KNLYI
Sbjct: 60 ERTTVDIVAIYNADKEGISESEISYKILTKEDNNAFPSPSPDGKYVVFRSGRTGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMC+WSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCSWSPDGEWI 152
>gi|376337986|gb|AFB33549.1| hypothetical protein 2_7121_02, partial [Abies alba]
Length = 150
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 109/152 (71%), Gaps = 7/152 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E+ GVY + DGS RR+++ AF T WD R VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIEYSGVYSMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAV--RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
E + VDI++I D + +S + + LT G NNAFPS SPDGK++VFRS RTG+KNLYIM
Sbjct: 60 EKTTVDIVAIYNADREDISEISYKTLTKEG-NNAFPSPSPDGKFVVFRSGRTGHKNLYIM 118
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
DAE GE GL +LTEGPW+DTMCNWSPDGEWI
Sbjct: 119 DAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWI 150
>gi|376337988|gb|AFB33550.1| hypothetical protein 2_7121_02, partial [Larix decidua]
Length = 152
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 107/153 (69%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD R VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S + T NNAFPS SPDGK++VFRS RTG+KNLYI
Sbjct: 60 EKTTVDIVAIYNADSEGISESEISYKTLTKVDNNAFPSPSPDGKFVVFRSGRTGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMCNWSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|383136411|gb|AFG49274.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
Length = 152
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 108/153 (70%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD ++ VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWD-WKKGVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S ++ T NNAFPS SPDGK++VFRS RTG+KNLYI
Sbjct: 60 ERTTVDIVAIYNADKEGISESEISYKILTKEDNNAFPSPSPDGKYVVFRSGRTGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMC WSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCTWSPDGEWI 152
>gi|376337994|gb|AFB33553.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
gi|376337996|gb|AFB33554.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
Length = 152
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 107/153 (69%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD R VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S ++ T NNAFPS SPDGK++VFRS R G+KNLYI
Sbjct: 60 ERTTVDIVAIYNADKEGISESEISYKILTKKDNNAFPSPSPDGKFVVFRSGRNGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMCNWSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|361068095|gb|AEW08359.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136400|gb|AFG49263.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136401|gb|AFG49264.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136402|gb|AFG49265.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136403|gb|AFG49266.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136404|gb|AFG49267.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136405|gb|AFG49268.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136406|gb|AFG49269.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136407|gb|AFG49270.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136408|gb|AFG49271.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136409|gb|AFG49272.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136410|gb|AFG49273.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136412|gb|AFG49275.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136413|gb|AFG49276.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136414|gb|AFG49277.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136415|gb|AFG49278.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136416|gb|AFG49279.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136417|gb|AFG49280.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
Length = 152
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 107/153 (69%), Gaps = 7/153 (4%)
Query: 426 FSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
FSP G IA++ E GVYV+ DGS RR+++ AF T WD R VVYTS GP F +
Sbjct: 1 FSPNGSLIAYIPNIENTGVYVMRLDGSGRRKIFSGAAFGTAWDWKR-GVVYTSAGPGFET 59
Query: 483 ESSEVDIISINVDDVDGVSAVR---RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E + VDI++I D +G+S ++ T NNAFPS SPDGK++VFRS RTG+KNLYI
Sbjct: 60 ERTTVDIVAIYNADKEGISESEISYKILTKEDNNAFPSPSPDGKYVVFRSGRTGHKNLYI 119
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
MDAE GE GL +LTEGPW+DTMC WSPDGEWI
Sbjct: 120 MDAEEGEEGGLWQLTEGPWTDTMCTWSPDGEWI 152
>gi|58532048|emb|CAE05101.3| OSJNBa0009K15.21 [Oryza sativa Japonica Group]
gi|125589699|gb|EAZ30049.1| hypothetical protein OsJ_14105 [Oryza sativa Japonica Group]
Length = 139
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 2/97 (2%)
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+AG NHP+FS D KS+VFTSDY +SAEP+S PH YQPYGEI+ + +DGS+++RLT NS
Sbjct: 28 AAGPTNHPWFSSDSKSLVFTSDYAAVSAEPVSNPHHYQPYGEIYTVDIDGSNIRRLTHNS 87
Query: 666 FEDGTPAWGPRFIRPVDVEEV--KNEQCAFEDCHWLN 700
FEDGTP+W P F+ P DV E + +CAF+DCHWLN
Sbjct: 88 FEDGTPSWTPYFLDPRDVGETLQASGRCAFQDCHWLN 124
>gi|399073331|ref|ZP_10750379.1| periplasmic component of the Tol biopolymer transport system
[Caulobacter sp. AP07]
gi|398041697|gb|EJL34752.1| periplasmic component of the Tol biopolymer transport system
[Caulobacter sp. AP07]
Length = 602
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 160/551 (29%), Positives = 228/551 (41%), Gaps = 81/551 (14%)
Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY 235
G+++++ S R + +Y L RL D A+SP G+ A S
Sbjct: 74 GQWVLFTSR-------RAGTSDIYRAHLDGSGLERLVASPAYDDQAALSPDGRSLAFVSS 126
Query: 236 GNKGWDGEVEMLSTDIYIFLTRD--GTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWIS 293
D + L++ LT D G R +G W + + R E D +
Sbjct: 127 RGGQADIWILDLASKALRNLTHDPAGDFRPSWSPDGRWLAFSSDRVSEHPRIPEGDFTLR 186
Query: 294 VYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP-----TSSYR- 347
I +V + ++RVT G A +P SP +K A P T++ R
Sbjct: 187 HSTEIY----IVKVDGTELRRVTRDGQFAGSPTWSPDGSKLAFYAATLPEVRNITAARRL 242
Query: 348 ----HIELFDLVKNKFIELTRFVSPK-THHLNPFISPDSSRVGY---------------H 387
IE DL LT K + H +++PD R+GY
Sbjct: 243 RGVTQIEAVDLGTGASQVLTSGAGEKWSPH---WLAPD--RIGYVSGGPEGGVEATAGPS 297
Query: 388 KCRGG----STREDGNNQLLLENIKSPLPD----ISL-----FRFDGSFPSFSPKGDR-- 432
RG S DG + L + S P +SL R G FPS+SP GDR
Sbjct: 298 GARGEFNSPSWSPDGRHMLFHREVDSTWPPDRRWVSLDPRFGLRRVGIFPSYSPTGDRRV 357
Query: 433 ----IAFVEFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESS 485
A + V ++N+DGS ++ K+A + W + + + G +F
Sbjct: 358 SNDKTAGILHNSVLMMNADGSGASVLFGDAEKSALAPSWSRQGDRIAFGLG--QFFQGIK 415
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN-LYIMDAEG 544
I V D G ++ LT N FP S DG+ IV+R + G N L ++D +
Sbjct: 416 GPAQADIAVIDAQG-GGLKLLTKGTGNFGFPDWSGDGRHIVYR--QAGAANALDVVDLDS 472
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE H L GP WSP + IAF +D D G +E+Y I +G+GL++L +S
Sbjct: 473 GES---HVLLAGPAHYNFPAWSPTADVIAFTADID----GDYEIYSIRADGSGLKRLTRS 525
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G H +SPDGK I F S GG E + P QPYGEI+ ++ DGS+ LT
Sbjct: 526 --PGNDAHNAWSPDGKWIAFASARGGFKDEALLHPANPQPYGEIYVMRADGSEAHALTDE 583
Query: 665 SFEDGTPAWGP 675
FE GTPAW P
Sbjct: 584 PFEKGTPAWAP 594
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 14/186 (7%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG A L + + ++ S S DG+W++F S R G ++Y +G GL
Sbjct: 45 IFIADADGSHATAFLP-DAELDSNASFSSDGQWVLFTSRRAGTSDIYRAHLDGS---GLE 100
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
RL P D SPDG +AF S R G +++++ LR L +
Sbjct: 101 RLVASPAYDDQAALSPDGRSLAFVSSR----GGQADIWILDLASKALRNLTHDPAGD--F 154
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQY--QPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P +SPDG+ + F+SD +S P + + EI+ +K+DG++L+R+T++ G
Sbjct: 155 RPSWSPDGRWLAFSSDR--VSEHPRIPEGDFTLRHSTEIYIVKVDGTELRRVTRDGQFAG 212
Query: 670 TPAWGP 675
+P W P
Sbjct: 213 SPTWSP 218
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 137/573 (23%), Positives = 215/573 (37%), Gaps = 163/573 (28%)
Query: 109 LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISM 168
+++ + R GTS+IY R L+ G E V P D
Sbjct: 77 VLFTSRRAGTSDIY--------------RAHLDGSGLE--RLVASPAYD----------- 109
Query: 169 KDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPS 226
D+ LS G L +VS+ R A ++ +L + R LT DF P+ SP
Sbjct: 110 -DQAALSPDGRSLAFVSS-------RGGQADIWILDLASKALRNLTHDPAGDFRPSWSPD 161
Query: 227 GKYTAVAS----YGNKGWDGEVEML-STDIYIFLTRDGTQRVKIVENG---GWPCWV-DE 277
G++ A +S + +G+ + ST+IYI + DGT+ ++ +G G P W D
Sbjct: 162 GRWLAFSSDRVSEHPRIPEGDFTLRHSTEIYI-VKVDGTELRRVTRDGQFAGSPTWSPDG 220
Query: 278 STLFFHRKSEEDDWISVYKVILPQT----------GLVSTESVSI-----QRVTPPGLHA 322
S L F Y LP+ G+ E+V + Q +T
Sbjct: 221 SKLAF------------YAATLPEVRNITAARRLRGVTQIEAVDLGTGASQVLTSGAGEK 268
Query: 323 FTPA-TSPGNNKFIA-------VATRRPTSSY------------RHIELFDLVKNKFIEL 362
++P +P +++ AT P+ + RH+ V + +
Sbjct: 269 WSPHWLAPDRIGYVSGGPEGGVEATAGPSGARGEFNSPSWSPDGRHMLFHREVDSTWPPD 328
Query: 363 TRFVS--PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD 420
R+VS P+ I P S G + T +N +L+ N + +
Sbjct: 329 RRWVSLDPRFGLRRVGIFPSYSPTGDRRVSNDKTAGILHNSVLMMNADGSGASVLFGDAE 388
Query: 421 GSF--PSFSPKGDRIAF--------VEFPG---VYVVNSDGSNR---------------- 451
S PS+S +GDRIAF ++ P + V+++ G
Sbjct: 389 KSALAPSWSRQGDRIAFGLGQFFQGIKGPAQADIAVIDAQGGGLKLLTKGTGNFGFPDWS 448
Query: 452 --------RQVYFKNAFSTVWDPVREAVVYTSGGPE--FASESSEVDIISINVDDVDG-- 499
RQ NA V E+ V +G F + S D+I+ D +DG
Sbjct: 449 GDGRHIVYRQAGAANALDVVDLDSGESHVLLAGPAHYNFPAWSPTADVIAFTAD-IDGDY 507
Query: 500 --------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--------------L 537
S ++RLT + N+A + SPDGKWI F S R G+K+ +
Sbjct: 508 EIYSIRADGSGLKRLTRSPGNDAHNAWSPDGKWIAFASARGGFKDEALLHPANPQPYGEI 567
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
Y+M A+G E H LT+ P+ W+P G
Sbjct: 568 YVMRADGSEA---HALTDEPFEKGTPAWAPTGR 597
>gi|388515823|gb|AFK45973.1| unknown [Medicago truncatula]
Length = 97
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPV 681
+VFTSDY GISAEPIS PH YQPYGEIF ++LDGS L RLT NS+EDGTPAW P++I+PV
Sbjct: 1 MVFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGLTRLTHNSYEDGTPAWSPKYIKPV 60
Query: 682 DVEEVK-NEQCAFEDCHWLNETPN 704
+VE K C+FEDCHWLN PN
Sbjct: 61 NVEMPKGGPYCSFEDCHWLNNMPN 84
>gi|222628523|gb|EEE60655.1| hypothetical protein OsJ_14106 [Oryza sativa Japonica Group]
Length = 153
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 7/122 (5%)
Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTR 364
E+ S++R+TP G HAFTPA SPG +AVATR S YRHIE+ D+ KN + E+TR
Sbjct: 16 VEAASVERITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTR 75
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGS 422
V+P+ H NPFIS D +RVGYH+C G R +G++ LLLENIKSP P SLFR DGS
Sbjct: 76 PVAPRVHRFNPFISLDGARVGYHRCWG---RGNGDSPLLLENIKSPGPADTFSLFRIDGS 132
Query: 423 FP 424
FP
Sbjct: 133 FP 134
>gi|224161605|ref|XP_002338348.1| predicted protein [Populus trichocarpa]
gi|222872001|gb|EEF09132.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 96/146 (65%), Gaps = 3/146 (2%)
Query: 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG 269
RLTP+G D+SPA+S S + AVASYG++ W GE + TDI +F + + R+ + ++G
Sbjct: 31 RLTPHGAVDYSPAISLSANFIAVASYGSRSWGGEFHDMHTDIVVFKESNPSTRIVLSDHG 90
Query: 270 GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVS-TESVSIQRVTPPGLHAFTPATS 328
GW W +S+++FHR++ +D W SV++V LP+ S S RVTPPG+H FTPA
Sbjct: 91 GWLTWCGDSSIYFHRQA-DDGWWSVFQVTLPENFEDSELPKASPVRVTPPGVHCFTPAAF 149
Query: 329 PGNNKFIAVATRRPTSSYRHIELFDL 354
+ K IAVATRR SY H+E+FD+
Sbjct: 150 Q-DGKRIAVATRRKGKSYGHVEIFDV 174
>gi|116626608|ref|YP_828764.1| hypothetical protein Acid_7571 [Candidatus Solibacter usitatus
Ellin6076]
gi|116229770|gb|ABJ88479.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus
Ellin6076]
Length = 638
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 155/522 (29%), Positives = 226/522 (43%), Gaps = 86/522 (16%)
Query: 196 AAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVAS-------YGNKGWDGEVEMLS 248
A +++ +L TG R LT DF P+ SP GK+ A +S + + W+ +
Sbjct: 152 ANLWTMDLVTGRARALTSGPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWE---RLQL 208
Query: 249 TDIYIFLTRDGTQRVKIVENG---GWPCWV-DESTLFFHRKSEEDDWISVYKVILP--QT 302
+DIY+ + DG+ KI ++G G P W+ D S + + + E + P T
Sbjct: 209 SDIYV-IRPDGSGLKKITKSGNFCGSPKWMGDSSHVIAYCMTAEQTLANRRASPDPGNDT 267
Query: 303 GLVSTE---SVSIQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKNK 358
LVS + + S + T PG+ P+ PGN +I T P Y
Sbjct: 268 RLVSIDTGTAASTELNTGPGVK-INPSWLPGNETGYIRKDTADPGIYYSSGRR------- 319
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCR--------GGSTREDGNNQLLLENIKSP 410
P SPD V + CR GG+ R N ++
Sbjct: 320 --------GPAGQIRGASWSPDGKLVVF--CRRANTPRPAGGAKRTFSRNSKYELSLTGI 369
Query: 411 LPDIS---LFRFDGSFPSFSPKGDRIAFVEFP-GVYVVNSDGSNRRQVYFKNAFSTVWDP 466
LP S S PS +P+G I+ G+ V + NR N W P
Sbjct: 370 LPAFSPSGRELVTNSPPSATPRGSSISVTALETGISKVVYEDKNR------NVLVGGWSP 423
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDD------------VDGVSAVRRLTTNGKNNA 514
+++ G EFA+ + V D DG + + LT NNA
Sbjct: 424 DGRRIIFAIG--EFAAFFDGFHSRFLKVGDRAETGARLAIVNADG-TGLTELTAEPGNNA 480
Query: 515 FPSVSPDGKWIVFRS-TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
FPS SPDGK V+R+ T GY L IM+ E G L R D WSP G+ I
Sbjct: 481 FPSFSPDGKRFVYRTFTEDGY-GLRIMNLETKTGKILTRQY-----DNFPLWSPRGDLIT 534
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F+ + G++E+Y I P+G+ L++L + + G H +SPDG+ IVFTS G
Sbjct: 535 FSRQIE----GAYEIYTIKPDGSSLKRL--TFTKGNDAHMAWSPDGEYIVFTSSRMGFKD 588
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E ++ QPYGEIF ++ DG+ +++LT N +E+GTPAW P
Sbjct: 589 E-VAYTDAPQPYGEIFVMRYDGTGVEQLTDNQWEEGTPAWQP 629
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 25/179 (13%)
Query: 440 GVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
G++V SDGS+ + + W P ++V+TS + D+ +N D
Sbjct: 64 GLFVAASDGSDEHPLLASADTDYDPAWAPDGGSIVFTS------ERNGSADLFRVNPDG- 116
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEG 556
S +++LT + + + S D K + F STR G NL+ MD G LT G
Sbjct: 117 ---SGLKQLTADPAYDDQATFSSDSKQLAFVSTRGGGTANLWTMDLVTGRA---RALTSG 170
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFE------MYLIHPNGTGLRKLIQSGS 606
P D +WSPDG+WIAF+S RDNP SG +E +Y+I P+G+GL+K+ +SG+
Sbjct: 171 PGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERLQLSDIYVIRPDGSGLKKITKSGN 229
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P+ +PDG IVF S R G +L+ ++ +G GL +LT P D +S D + +AF
Sbjct: 88 PAWAPDGGSIVFTSERNGSADLFRVNPDGS---GLKQLTADPAYDDQATFSSDSKQLAFV 144
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
S R + + M L+ TG + + SG G P +SPDGK I F+S G + P
Sbjct: 145 STRGGGTANLWTMDLV----TGRARALTSGPGGDF-RPSWSPDGKWIAFSS--GRDNPVP 197
Query: 636 ISTPH-QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
++ + +I+ I+ DGS LK++T++ G+P W
Sbjct: 198 FASGRWERLQLSDIYVIRPDGSGLKKITKSGNFCGSPKW 236
>gi|218192691|gb|EEC75118.1| hypothetical protein OsI_11299 [Oryza sativa Indica Group]
Length = 189
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 19/184 (10%)
Query: 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQ-RVKIVENGGWPCWVD 276
D SP+VSPSGK AVASY K WDGE++ L+T+IY+ + +Q R +++ENGGWP W
Sbjct: 9 DISPSVSPSGKKVAVASYQGKKWDGEIKNLNTNIYVMSLENPSQDRERVIENGGWPSWGS 68
Query: 277 ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIA 336
E +FFHRK + D S + V + L + E+V RVTP + TPA + +A
Sbjct: 69 EDVIFFHRK-DGDGENSCWGVF--RHTLSTGETV---RVTPAAFDSVTPAAI--DETRVA 120
Query: 337 VATRRPTS---------SYRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGY 386
VA R S YRHIE+FD+ + +++TR PK H NPF+ +GY
Sbjct: 121 VAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQITRNTRPKADHFNPFVMDGGKFIGY 180
Query: 387 HKCR 390
H+C+
Sbjct: 181 HRCK 184
>gi|224159775|ref|XP_002338123.1| predicted protein [Populus trichocarpa]
gi|222870940|gb|EEF08071.1| predicted protein [Populus trichocarpa]
Length = 124
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 94/186 (50%), Gaps = 79/186 (42%)
Query: 162 NGGVISMKDKPILSGEYLI------YVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG 215
GG++ MKDKP +SG+YL+ Y+STHENP PRTSWAAVY T +T RL P+G
Sbjct: 12 QGGIL-MKDKPTVSGDYLVKKKRLVYLSTHENPCEPRTSWAAVYLTR----VTLRLAPHG 66
Query: 216 VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWV 275
+ADFS AVSPSG +VE+GGWP WV
Sbjct: 67 IADFSFAVSPSG-------------------------------------VVEHGGWPSWV 89
Query: 276 DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFI 335
DES + ++RVTPPGLHAFTP TSPGN KFI
Sbjct: 90 DESVI-------------------------------VERVTPPGLHAFTPDTSPGNKKFI 118
Query: 336 AVATRR 341
AVATRR
Sbjct: 119 AVATRR 124
>gi|229160030|ref|ZP_04288034.1| WD40-like Beta Propeller [Bacillus cereus R309803]
gi|228623467|gb|EEK80289.1| WD40-like Beta Propeller [Bacillus cereus R309803]
Length = 298
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 149/310 (48%), Gaps = 55/310 (17%)
Query: 382 SRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
S++ + R G+ DG+NQ + N +P D P++SP G +IAF
Sbjct: 33 SKIAFSSNRDGNFEIYVMNPDGSNQTNITN--NPDNDFE--------PTWSPDGQKIAFS 82
Query: 437 EFPG----VYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490
+YV+N+DGSN+ + + W P + + ++S F +SE+ ++
Sbjct: 83 SIRDGNIEIYVMNADGSNQTNITNNPNDDLEPAWSPDGQKIAFSS----FRDGNSEIYVM 138
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+VDG + R LT N +++ P+ SPDG+ I F S R G +Y+M+A G
Sbjct: 139 -----NVDGTNQTR-LTNNPASDSKPTWSPDGQKIAFSSNRNGPLEIYVMNANGSN---Q 189
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+T P D WSPDG+ IAF S R+ + E+Y+I+ +G+ +L + S G
Sbjct: 190 TNITNNPDGDFEPAWSPDGQKIAFTSVRNE----NLEIYVINVDGSNQTRL--TNSQGDN 243
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
+ P +SPDG+ I F+S G EI+ + DGS+ +T N D
Sbjct: 244 SLPTWSPDGQKIAFSSTRNG--------------NREIYVMNADGSNQTNITNNPAADSE 289
Query: 671 PAWGPRFIRP 680
PAW P F+RP
Sbjct: 290 PAWSP-FMRP 298
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 122/258 (47%), Gaps = 40/258 (15%)
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
+ F P SP K IA ++ R +IE++ ++ T + L P SPD
Sbjct: 66 NDFEPTWSPDGQK-IAFSSIRDG----NIEIY-VMNADGSNQTNITNNPNDDLEPAWSPD 119
Query: 381 SSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
++ + R G++ DG NQ L N +P D S P++SP G +IAF
Sbjct: 120 GQKIAFSSFRDGNSEIYVMNVDGTNQTRLTN--NPASD--------SKPTWSPDGQKIAF 169
Query: 436 VEFPG----VYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
+YV+N++GSN+ + F W P + + +TS +E+ E+ +
Sbjct: 170 SSNRNGPLEIYVMNANGSNQTNITNNPDGDFEPAWSPDGQKIAFTS----VRNENLEIYV 225
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
I +VDG S RLT + +N+ P+ SPDG+ I F STR G + +Y+M+A+G
Sbjct: 226 I-----NVDG-SNQTRLTNSQGDNSLPTWSPDGQKIAFSSTRNGNREIYVMNADGSN--- 276
Query: 550 LHRLTEGPWSDTMCNWSP 567
+T P +D+ WSP
Sbjct: 277 QTNITNNPAADSEPAWSP 294
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 44/268 (16%)
Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLF 417
T + + P SPD ++ + R G+ DG+NQ + N +P D+
Sbjct: 58 TNITNNPDNDFEPTWSPDGQKIAFSSIRDGNIEIYVMNADGSNQTNITN--NPNDDLE-- 113
Query: 418 RFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAV 471
P++SP G +IAF F +YV+N DG+N+ ++ A + W P + +
Sbjct: 114 ------PAWSPDGQKIAFSSFRDGNSEIYVMNVDGTNQTRLTNNPASDSKPTWSPDGQKI 167
Query: 472 VYTSG--GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
++S GP + I V + +G S +T N + P+ SPDG+ I F S
Sbjct: 168 AFSSNRNGP-----------LEIYVMNANG-SNQTNITNNPDGDFEPAWSPDGQKIAFTS 215
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
R +Y+++ +G RLT +++ WSPDG+ IAF+S R+ G+ E+Y
Sbjct: 216 VRNENLEIYVINVDGSN---QTRLTNSQGDNSLPTWSPDGQKIAFSSTRN----GNREIY 268
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+++ +G+ + + +A P +SP
Sbjct: 269 VMNADGSNQTNITNNPAADS--EPAWSP 294
>gi|395008490|ref|ZP_10392140.1| periplasmic component of the Tol biopolymer transport system
[Acidovorax sp. CF316]
gi|394313492|gb|EJE50504.1| periplasmic component of the Tol biopolymer transport system
[Acidovorax sp. CF316]
Length = 637
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 142/532 (26%), Positives = 224/532 (42%), Gaps = 86/532 (16%)
Query: 196 AAVYSTELKTGLTRRLTPY----GVAD-----FSPAVSPSGKYTAVASYGNKGWDGEVEM 246
A ++ +LK + LT G AD F P+ SP G++ A +S + W G
Sbjct: 136 ANIWMLDLKIRTLKNLTGVKGIQGRADSPNGFFRPSWSPDGQWLAFSSDRDTEWKGHHNG 195
Query: 247 L----STDIYIFLTR-DGTQRVKIVENG----GWPCWVDEST--LFFHRKSEEDDWISVY 295
+ ++ I++ R DGT KI G P W + +F+ ++E W+
Sbjct: 196 AGWEHTQELSIYVIRADGTGFRKISSRKDYCQGSPKWSADGKRIVFYETQAEYTYWVLRP 255
Query: 296 KVILP-QTGLVSTESVSIQRVTPPGLHAFTPA--TSP---GNNKFIAVATRRPTSSYRHI 349
++L + +VS + S +R H P SP G+++ + P
Sbjct: 256 DLLLKIDSQIVSVDVASGERTE----HTSGPGFKISPQYLGSDEIVYRRKGGPEDG---- 307
Query: 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
L+ K + + +T P SPD RV Y K + R NQ L
Sbjct: 308 -LYSTAAGK--AMVKIAGLRT----PAWSPDGKRVVYEKF---TWRGWKQNQALYS---- 353
Query: 410 PLPDISLFRFDGSFPSFSPKGDRI--AFVEFPGVYVVNSDGSNRRQVY------------ 455
+R+ +P+FS G + A E V V+ +DGS RR+VY
Sbjct: 354 -WEAGREYRYTDVWPAFSKDGWMVLTAKHEDGSVDVMRADGSERRRVYDVTKQSGLDLTL 412
Query: 456 ----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
AF VW P E +V+ G ++ + D S + +LT +
Sbjct: 413 VKRGLAGAFFPVWSPDGEWIVFGVGEWFTQRGKGRAKLMRVKRDG----SGLEQLTDDSV 468
Query: 512 NNA-FPSVSPDGKWIVFR-----STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
NA FPS S DGK +VFR + L +++ E + + +T G D M W
Sbjct: 469 FNAGFPSYSADGKEVVFRIANQDPSSASLGGLAVLNLETRQ---IRHITRG--YDNMPIW 523
Query: 566 SPDGEWIAFASDRDNPGS--GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
SPDG I F NP S +F++Y + P+G+ LR+L ++ HP ++ DGK I+
Sbjct: 524 SPDGSRILFNRGVRNPDSIWSNFDLYTVRPDGSDLRRLTDHPASD--GHPVWTADGKQIL 581
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ S G E +QPYG++F + DGS +++T + +ED TP + P
Sbjct: 582 YNSGQAGYRDEACHYDQTFQPYGQVFVMNADGSGKRQITDSIWEDSTPQYAP 633
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+++ N+DGSN R++ ++ + + +V+TS E + ++ D
Sbjct: 47 IFIANADGSNERKLIDSGTLDYNASFSADGQWIVFTS-------ERDGLGNSNLYRARTD 99
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAE--------GGEGYG 549
G + V RLT ++SPD + F STR G N++++D + G +G
Sbjct: 100 G-TQVERLTDGSIVEDAAALSPDASKVAFVSTRDGMLANIWMLDLKIRTLKNLTGVKG-- 156
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGL 598
+ + P +WSPDG+W+AF+SDRD G +Y+I +GTG
Sbjct: 157 IQGRADSPNGFFRPSWSPDGQWLAFSSDRDTEWKGHHNGAGWEHTQELSIYVIRADGTGF 216
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVF 624
RK I S P +S DGK IVF
Sbjct: 217 RK-ISSRKDYCQGSPKWSADGKRIVF 241
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + + DG S R+L +G + S S DG+WIVF S R G N + A +G +
Sbjct: 47 IFIANADG-SNERKLIDSGTLDYNASFSADGQWIVFTSERDGLGNSNLYRART-DGTQVE 104
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL---IHPNGTGLRKLIQSGSAG 608
RLT+G + SPD +AF S RD + + + L N TG++ G G
Sbjct: 105 RLTDGSIVEDAAALSPDASKVAFVSTRDGMLANIWMLDLKIRTLKNLTGVK-----GIQG 159
Query: 609 RAN------HPYFSPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
RA+ P +SPDG+ + F+SD ++ I+ I+ DG+ +++
Sbjct: 160 RADSPNGFFRPSWSPDGQWLAFSSDRDTEWKGHHNGAGWEHTQELSIYVIRADGTGFRKI 219
Query: 662 -TQNSFEDGTPAW 673
++ + G+P W
Sbjct: 220 SSRKDYCQGSPKW 232
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 41/263 (15%)
Query: 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395
+V R S R ++D+ K ++LT P SPD + + + R
Sbjct: 385 SVDVMRADGSERR-RVYDVTKQSGLDLTLVKRGLAGAFFPVWSPDGEWIVFGVGEWFTQR 443
Query: 396 EDGNNQLLLENIK------SPLPDISLFRFDGSFPSFSPKGDRIAF---------VEFPG 440
G +L+ +K L D S+F + FPS+S G + F G
Sbjct: 444 GKGRAKLM--RVKRDGSGLEQLTDDSVF--NAGFPSYSADGKEVVFRIANQDPSSASLGG 499
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
+ V+N + R + +W P +++ G S S D+ ++ D D
Sbjct: 500 LAVLNLETRQIRHITRGYDNMPIWSPDGSRILFNRGVRNPDSIWSNFDLYTVRPDGSD-- 557
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--------------LYIMDAEGGE 546
+RRLT + ++ P + DGK I++ S + GY++ +++M+A+G
Sbjct: 558 --LRRLTDHPASDGHPVWTADGKQILYNSGQAGYRDEACHYDQTFQPYGQVFVMNADGS- 614
Query: 547 GYGLHRLTEGPWSDTMCNWSPDG 569
G ++T+ W D+ ++P G
Sbjct: 615 --GKRQITDSIWEDSTPQYAPPG 635
Score = 38.9 bits (89), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
G + ++++ + +G+ RKLI SG+ + FS DG+ IVFTS+ G+
Sbjct: 41 GPSASQIFIANADGSNERKLIDSGTLD--YNASFSADGQWIVFTSERDGLGNS------- 91
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ + DG+ ++RLT S + A P
Sbjct: 92 -----NLYRARTDGTQVERLTDGSIVEDAAALSP 120
>gi|332530720|ref|ZP_08406649.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624]
gi|332039810|gb|EGI76207.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624]
Length = 638
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 216/503 (42%), Gaps = 83/503 (16%)
Query: 219 FSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENG---- 269
F P+ SP G++ A +S N W DG + ++ I++ R DGT ++
Sbjct: 169 FRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGLRRVASRKDHCL 228
Query: 270 GWPCWVDEST--LFFHRKSEEDDWISVYKVILP-QTGLVSTESVSIQRVTPPGLHAFTPA 326
G P W + +F+ +E W+ ++L + +VS + S R +H P
Sbjct: 229 GSPRWSGDGKRIVFYETLAEYTYWVLRPDLLLKIDSQIVSVDVDSGART----VHTEGPG 284
Query: 327 --TSP---GNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPD 380
SP GN++ + P L+ V + ++L +P S D
Sbjct: 285 FKISPQYIGNDEIVYRRKGGPAEG-----LYSTVPGRPVVKLEGLRTPA-------WSTD 332
Query: 381 SSRVGYHK--CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI--AFV 436
RV Y K RG + N L + P +R+ +P+F+ G + A
Sbjct: 333 GRRVVYEKFTWRGWTQ----NQALYSWDAGRP------YRYTDVWPAFAKDGTMVLTAKG 382
Query: 437 EFPGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSGGPEF 480
E V ++ DGS RR+VY AF VW P E +V+ G
Sbjct: 383 EDSSVDIMRPDGSARRRVYDVSRQSGLDPVLVKRGLAGAFFPVWSPDGEWIVFGVGEWFT 442
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYKN--- 536
++ + D S + +LT + NA FPS S DGK +VFR K+
Sbjct: 443 QRGRGRAKLMRVRRDG----SGLEQLTDDSIFNAGFPSYSADGKEVVFRIANEDPKSASL 498
Query: 537 --LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS--GSFEMYLIH 592
L +++ E + + R+T G D M WSPDG I F NP S +F++Y +
Sbjct: 499 GGLAVLNLETRQ---IRRITAG--YDNMPIWSPDGSRILFNRGVRNPNSIWSNFDLYTVR 553
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
P+G+ L++L ++ HP ++PDGK I++ S G E +QPYG++F +
Sbjct: 554 PDGSDLQRLTSHPASD--GHPVWTPDGKQILYNSGMAGYRDEACHYDQTFQPYGQLFVMD 611
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DG + +++T + +ED TP + P
Sbjct: 612 ADGRNKRQITDSIWEDSTPQYVP 634
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 39/210 (18%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP--EFASESSEVDIISINVDDVD 498
+Y+ N+DGSN R + ++S G F SE + ++ D
Sbjct: 46 LYIANADGSNERLLIDSGTLDY-------NASFSSDGQWIVFTSERDGLGNSNLYRARAD 98
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAE--------GGEGYG 549
G + V RLT + + SPDG + F STR G+ N++++D + G +G
Sbjct: 99 G-TQVERLTDSPAVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQ 157
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGL 598
L P +WSPDG+W+AF+SDR+ G +Y+I +GTGL
Sbjct: 158 ADDLQNSPSGFFRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGL 217
Query: 599 RKLIQSGSAGRANH----PYFSPDGKSIVF 624
R++ A R +H P +S DGK IVF
Sbjct: 218 RRV-----ASRKDHCLGSPRWSGDGKRIVF 242
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY--KNLYIMDAEGGEGYG 549
+ + + DG S R L +G + S S DG+WIVF S R G NLY A+G +
Sbjct: 46 LYIANADG-SNERLLIDSGTLDYNASFSSDGQWIVFTSERDGLGNSNLYRARADGTQ--- 101
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKL----I 602
+ RLT+ P D +SPDG +AF S RD + + + L N TG++ + +
Sbjct: 102 VERLTDSPAVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQADDL 161
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
Q+ +G P +SPDG+ + F+SD ++ I+ I++DG+ L+R+
Sbjct: 162 QNSPSG-FFRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGLRRV 220
Query: 662 -TQNSFEDGTPAW 673
++ G+P W
Sbjct: 221 ASRKDHCLGSPRW 233
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYI +A+G L + D ++S DG+WI F S+RD G G+ +Y +GT
Sbjct: 46 LYIANADGSN---ERLLIDSGTLDYNASFSSDGQWIVFTSERD--GLGNSNLYRARADGT 100
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-LDG 655
+ +L S + A FSPDG + F S G A Q + + IK +
Sbjct: 101 QVERLTDSPAVDDA--AVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQA 158
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
DL+ F P+W P
Sbjct: 159 DDLQNSPSGFFR---PSWSP 175
>gi|383135218|gb|AFG48601.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 504 RRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
R LT +G KNNAFPS SPDGK +VFRS R+G+KNLYIMDAE GE G+H LTEGPW DTM
Sbjct: 28 RILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHKNLYIMDAEKGEESGIHALTEGPWIDTM 87
Query: 563 CNWSPDGEWI 572
+WSPDGEWI
Sbjct: 88 PSWSPDGEWI 97
>gi|361068761|gb|AEW08692.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|376338658|gb|AFB33859.1| hypothetical protein CL1213Contig1_01, partial [Pinus mugo]
gi|376338660|gb|AFB33860.1| hypothetical protein CL1213Contig1_01, partial [Pinus mugo]
gi|383135224|gb|AFG48604.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 504 RRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
R LT +G KNNAFPS SPDGK +VFRS R+G+KNLYIMDAE GE G+H LTEGPW DTM
Sbjct: 28 RILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHKNLYIMDAEKGEEGGIHALTEGPWIDTM 87
Query: 563 CNWSPDGEWI 572
+WSPDGEWI
Sbjct: 88 PSWSPDGEWI 97
>gi|383135220|gb|AFG48602.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|383135222|gb|AFG48603.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|383135226|gb|AFG48605.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 504 RRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
R LT +G KNNAFPS SPDGK +VFRS R+G+KNLYIMDAE GE G+H LTEGPW DTM
Sbjct: 28 RILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHKNLYIMDAEEGEEGGIHALTEGPWIDTM 87
Query: 563 CNWSPDGEWI 572
+WSPDGEWI
Sbjct: 88 PSWSPDGEWI 97
>gi|361068759|gb|AEW08691.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 501 SAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
S VR LT +G KNNAFPS SPDGK +VFRS R+G+KNLYIMDAE GE G+ LTEGPW
Sbjct: 25 SEVRILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHKNLYIMDAEQGEEGGIRALTEGPWI 84
Query: 560 DTMCNWSPDGEWI 572
DTM +WSPDGEWI
Sbjct: 85 DTMPSWSPDGEWI 97
>gi|349701318|ref|ZP_08902947.1| hypothetical protein GeurL1_11025 [Gluconacetobacter europaeus LMG
18494]
Length = 614
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 227/558 (40%), Gaps = 99/558 (17%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVAD------ 218
S+ D +LS G L +VST A ++ +L+TG R LT
Sbjct: 106 SVDDAAVLSPDGTRLAFVSTRNG------YRANIWVMDLRTGKLRNLTGSARVQGDKAGP 159
Query: 219 ---FSPAVSPSGKYTAVASYGN---------KGWDGEVEMLSTDIYIFLTRDGTQRVKIV 266
F PA SP G++ A +S N +GW+ E+ IYI + DG +I
Sbjct: 160 DCFFRPAWSPDGRWLAFSSDRNTPWRGHDNGRGWEHTQEL---SIYI-IGADGRGFRRIA 215
Query: 267 ENG----GWPCWV-DESTLFFHRKSEEDDWIS-----VYKVILPQTGLVSTESVSIQRVT 316
G P W D + F+ E W + V V+ + IQ +
Sbjct: 216 ARPDYCLGSPKWSPDGRRVVFYEMLTESTWGARRPEGVASVVSQIVSVDVASGERIQHTS 275
Query: 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL-NP 375
PGL F +F+ T R +R ++ + T ++ L +P
Sbjct: 276 GPGLKVFP--------QFV---TARIIGYHRKGG-----PDEGLAYTTDIAAIHRVLRSP 319
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
SPD +V Y K S R NQ L P D +R FP S G ++
Sbjct: 320 AWSPDGRQVMYEKA---SFRPFAQNQPLYS--WDPERD---YRHTDVFPGLSRDG-KLVL 370
Query: 436 VEFP---GVYVVNSDGSNRRQVY---------------FKNAFSTVWDPVREAVVYTSGG 477
E + ++N DGS+R++++ AF+ W P + + + G
Sbjct: 371 TEKALNSSIAIMNPDGSDRQRIFDVSRTHLNQMQVAHGMAGAFAPAWSPDGQWIAFGLGQ 430
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
A + ++ + D SAV LT ++ FPS S DG+ +V+R L
Sbjct: 431 WFQARRTGRAVVMRMRRDG----SAVEPLTDGTVHSGFPSYSADGQQVVYRVWGENNMGL 486
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
I+D + LT D + WSPDG I F D+ +++++ I PNGTG
Sbjct: 487 RILDLPTRQ---TRVLTTA--YDNLPGWSPDGGRIVFTRRVDDE---NYDIFTIRPNGTG 538
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L++L SG+ H ++ DG+ I+++S G E + +QPYG+IF + DGS
Sbjct: 539 LKRLTTSGA--NDGHAVWTADGR-IMWSSGIYGFRDEAALYDNTFQPYGQIFIMNADGSH 595
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ LT + +ED P + P
Sbjct: 596 KRILTDSLWEDSMPLYVP 613
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 43/211 (20%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y+ N+DG + R N + + P +++++TS + + DI D D
Sbjct: 42 LYIANADGRDERPFLSGNGLDYHASFSPDGQSILFTSE----RNGLGQADIFRARPDGTD 97
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLT--- 554
V L ++ + +SPDG + F STR GY+ N+++MD G+ L LT
Sbjct: 98 ----VTPLISHPSVDDAAVLSPDGTRLAFVSTRNGYRANIWVMDLRTGK---LRNLTGSA 150
Query: 555 --EGPWSDTMC----NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTG 597
+G + C WSPDG W+AF+SDR+ P G +Y+I +G G
Sbjct: 151 RVQGDKAGPDCFFRPAWSPDGRWLAFSSDRNTPWRGHDNGRGWEHTQELSIYIIGADGRG 210
Query: 598 LRKLIQSGSAGRANH----PYFSPDGKSIVF 624
R++ A R ++ P +SPDG+ +VF
Sbjct: 211 FRRI-----AARPDYCLGSPKWSPDGRRVVF 236
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + + DG L+ NG + S SPDG+ I+F S R G I A +G +
Sbjct: 42 LYIANADGRDERPFLSGNGLD-YHASFSPDGQSILFTSERNGLGQADIFRARP-DGTDVT 99
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKL-----IQSG 605
L P D SPDG +AF S R+ + + M L TG LR L +Q
Sbjct: 100 PLISHPSVDDAAVLSPDGTRLAFVSTRNGYRANIWVMDLR----TGKLRNLTGSARVQGD 155
Query: 606 SAGRAN--HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE---------IFKIKLD 654
AG P +SPDG+ + F+SD +TP + G I+ I D
Sbjct: 156 KAGPDCFFRPAWSPDGRWLAFSSDR--------NTPWRGHDNGRGWEHTQELSIYIIGAD 207
Query: 655 GSDLKRLTQN-SFEDGTPAWGP 675
G +R+ + G+P W P
Sbjct: 208 GRGFRRIAARPDYCLGSPKWSP 229
>gi|224114962|ref|XP_002332273.1| predicted protein [Populus trichocarpa]
gi|222832038|gb|EEE70515.1| predicted protein [Populus trichocarpa]
Length = 89
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 71/139 (51%), Gaps = 52/139 (37%)
Query: 203 LKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR 262
L +TRRLTP+ +ADFS AVSPSG VASYG +GW
Sbjct: 3 LPIKVTRRLTPHEIADFSFAVSPSGVNIVVASYGERGWS--------------------- 41
Query: 263 VKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHA 322
VK+VE+GGWP WVDES + ++RVTP GLHA
Sbjct: 42 VKVVEHGGWPSWVDESVI-------------------------------VERVTPLGLHA 70
Query: 323 FTPATSPGNNKFIAVATRR 341
TPATSPGN KFIAVATRR
Sbjct: 71 LTPATSPGNKKFIAVATRR 89
>gi|224056419|ref|XP_002298847.1| predicted protein [Populus trichocarpa]
gi|222846105|gb|EEE83652.1| predicted protein [Populus trichocarpa]
Length = 64
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 54/64 (84%)
Query: 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337
STL+FHR+S ED+WISVYK LP G +S ESV ++RVTPPG HAFTPATSPGN KFIAV
Sbjct: 1 STLYFHRRSVEDNWISVYKATLPNHGSISIESVIVERVTPPGFHAFTPATSPGNKKFIAV 60
Query: 338 ATRR 341
ATRR
Sbjct: 61 ATRR 64
>gi|297171859|gb|ADI22848.1| periplasmic component of the Tol biopolymer transport system
[uncultured nuHF2 cluster bacterium HF0500_31B05]
Length = 848
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 132/535 (24%), Positives = 214/535 (40%), Gaps = 105/535 (19%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
+YS + +G T RLT + D PA SP G+ S + G E+ + D
Sbjct: 145 IYSVDTASGATTRLTNHEADDLEPAWSPDGRQLLFVSSRS----GNAEIYAADA------ 194
Query: 258 DGTQRVKIVEN---GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR 314
DG V + + G P W + T + S+ D +Y L+S + I+
Sbjct: 195 DGGNPVNVSTHEATDGSPSWSPDGTTIAY-TSDRDGNSDLY--------LMSAHAPEIEP 245
Query: 315 VT---PPGLHAFTPATSPGNNKFIAVATRRPTSSY----------RHIELFDLV------ 355
V FTP+ SP + + V+ R + + R +E D
Sbjct: 246 VNLTYDSAFDGFTPSWSPDSEQLTFVSNRSGNNDFEIYSMFVQPQRFLEELDQAGFPAWS 305
Query: 356 ---------------KNKF------IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394
K+ F IE+ + + P SPD+S + + R
Sbjct: 306 RNGNRLAVVAQGAVNKDIFVSDADGIEIDNLTTDAANERFPAWSPDASAIAFTSDR---- 361
Query: 395 REDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVE----FPGVYVVNSDGS 449
DGN+++ L + +P + F P +SP I FV +Y+V S
Sbjct: 362 --DGNDEIYLMSPDGMVPFELITDAANDFDPVWSPNESTIGFVTDRDGNEEIYLVRSGAE 419
Query: 450 NRRQVYFKNAFST---VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
+NA + W P + +V+ S + E+ I+++ D D +++ RL
Sbjct: 420 EEAINLTENAANDRDFAWSPDGDRLVFVSD----RDGNDEIYILTL-ADTTD--TSLLRL 472
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T N + + P+ SPD K I F S R G +LY + A+ + +G D + WS
Sbjct: 473 TNNTQRDGDPTWSPDAKEIAFTSDRDGGVDLYTLRADAASSEAIRLTEDGSVDDPV--WS 530
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
P+ IAF SDR +G E+Y I +G L S G P + PDG + F S
Sbjct: 531 PNATRIAFVSDR----TGDREIYSIDADGGTAVNL--SDHPGEDYAPTWFPDGSLLAFVS 584
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPV 681
+ G QP ++++++ DG ++ RLT+N E+ P+W P ++ V
Sbjct: 585 NRDG------------QP--DLYRMERDGDEVTRLTENEDEEDAPSWSPSGLQLV 625
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 57/290 (19%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGG 477
P +SP G R+AFV +Y +N DGS +++ A S W P + + S
Sbjct: 80 PDWSPDGLRLAFVSNRAFNNEIYTMNGDGSGVQRMTEHEAVDGSPAWAPDGSRIAFVSDR 139
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
E ++I S++ A RLT + ++ P+ SPDG+ ++F S+R+G +
Sbjct: 140 DE------NLEIYSVDT----ASGATTRLTNHEADDLEPAWSPDGRQLLFVSSRSGNAEI 189
Query: 538 YIMDAEGGE--GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
Y DA+GG H T+G S WSPDG IA+ SDRD G+ ++YL+ +
Sbjct: 190 YAADADGGNPVNVSTHEATDGSPS-----WSPDGTTIAYTSDRD----GNSDLYLMSAHA 240
Query: 596 TGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGG--------ISAEPISTPHQYQPYG 646
+ + + SA P +SPD + + F S+ G + +P + G
Sbjct: 241 PEIEPVNLTYDSAFDGFTPSWSPDSEQLTFVSNRSGNNDFEIYSMFVQPQRFLEELDQAG 300
Query: 647 ---------------------EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+IF DG ++ LT ++ + PAW P
Sbjct: 301 FPAWSRNGNRLAVVAQGAVNKDIFVSDADGIEIDNLTTDAANERFPAWSP 350
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/465 (23%), Positives = 188/465 (40%), Gaps = 66/465 (14%)
Query: 221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWV-DEST 279
PA SP +A+A ++ + E+ ++S D + + + N P W +EST
Sbjct: 346 PAWSPDA--SAIAFTSDRDGNDEIYLMSPDGMVPF-----ELITDAANDFDPVWSPNEST 398
Query: 280 LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVAT 339
+ F + ++ I + + + + TE+ + R A SP ++ + V+
Sbjct: 399 IGFVTDRDGNEEIYLVRSGAEEEAINLTENAANDR---------DFAWSPDGDRLVFVSD 449
Query: 340 RRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399
R I + L L R + +P SPD+ + + R DG
Sbjct: 450 R---DGNDEIYILTLADTTDTSLLRLTNNTQRDGDPTWSPDAKEIAFTSDR------DGG 500
Query: 400 NQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAFV-EFPG---VYVVNSDGSNRRQ 453
L + + DGS P +SP RIAFV + G +Y +++DG
Sbjct: 501 VDLYTLRADAASSEAIRLTEDGSVDDPVWSPNATRIAFVSDRTGDREIYSIDADGGTAVN 560
Query: 454 V--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+ + ++ W P + + S + + D+ + D V RLT N
Sbjct: 561 LSDHPGEDYAPTWFPDGSLLAFVS------NRDGQPDLYRMERDG----DEVTRLTENED 610
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
PS SP G +V+ S +G N+ ++ G +G R+T+ P +D WS G+
Sbjct: 611 EEDAPSWSPSGLQLVYASGSSGNLNIQLI---GSQGLVPRRVTDHPGADVCPTWSSSGDR 667
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IA+ S+RD G++E+Y+ + L + S A +P ++P ++F S+ G
Sbjct: 668 IAYMSNRD----GNYEIYVSKQDSLELAPTNLTSAPAADDRYPAWAPSRGELLFVSNRDG 723
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
EI+ + +GS+L RLT N ED W P
Sbjct: 724 --------------NNEIYLMDANGSNLVRLTDNPSEDLFATWSP 754
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
+LT + + P SPDG + F S R +Y M+ G+G G+ R+TE D
Sbjct: 69 QLTRHEAMDGEPDWSPDGLRLAFVSNRAFNNEIYTMN---GDGSGVQRMTEHEAVDGSPA 125
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
W+PDG IAF SDRD + E+Y + +L + P +SPDG+ ++F
Sbjct: 126 WAPDGSRIAFVSDRDE----NLEIYSVDTASGATTRLTNHEADDL--EPAWSPDGRQLLF 179
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S G EI+ DG + ++ + DG+P+W P
Sbjct: 180 VSSRSG--------------NAEIYAADADGGNPVNVSTHEATDGSPSWSP 216
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 120/486 (24%), Positives = 183/486 (37%), Gaps = 110/486 (22%)
Query: 253 IFLTRDGTQR--VKIVENGGWP---CWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVS 306
I+L R G + + + EN W D L F + +D I + L
Sbjct: 411 IYLVRSGAEEEAINLTENAANDRDFAWSPDGDRLVFVSDRDGNDEIYILT-------LAD 463
Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV 366
T S+ R+T P SP + K IA + R + D ++ I LT
Sbjct: 464 TTDTSLLRLTNNTQRDGDPTWSP-DAKEIAFTSDRDGGVDLYTLRADAASSEAIRLTEDG 522
Query: 367 SPKTHHLNPFISPDSSRVGYHKCRGG-----STREDGNNQLLLENIKSPLPDISLFRFDG 421
S +P SP+++R+ + R G S DG + L + P D +
Sbjct: 523 SVD----DPVWSPNATRIAFVSDRTGDREIYSIDADGGTAVNLSD--HPGEDYA------ 570
Query: 422 SFPSFSPKGDRIAFVEF----PGVYVVNSDGSN--RRQVYFKNAFSTVWDPVREAVVYTS 475
P++ P G +AFV P +Y + DG R + W P +VY S
Sbjct: 571 --PTWFPDGSLLAFVSNRDGQPDLYRMERDGDEVTRLTENEDEEDAPSWSPSGLQLVYAS 628
Query: 476 GG----------------------------PEFASESSEVDIIS-------INVDDVDGV 500
G P ++S + +S I V D +
Sbjct: 629 GSSGNLNIQLIGSQGLVPRRVTDHPGADVCPTWSSSGDRIAYMSNRDGNYEIYVSKQDSL 688
Query: 501 S-AVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
A LT+ ++ +P+ +P ++F S R G +Y+MDA G L RLT+ P
Sbjct: 689 ELAPTNLTSAPAADDRYPAWAPSRGELLFVSNRDGNNEIYLMDANGS---NLVRLTDNPS 745
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGL-----RKLIQSGSAGRA 610
D WSPDG + FASDR G F++Y L+ + + R+L G + +
Sbjct: 746 EDLFATWSPDGSQVVFASDR----GGRFDLYGMELVRDDQDNVTVVNQRRLTDFGISSTS 801
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
+ ++S + IVF SD G S +I L +RLT +S D +
Sbjct: 802 SISWYSV--RDIVFASDRDGTS-----------------RIYLRDITPERLTSSSGFDWS 842
Query: 671 PAWGPR 676
P W PR
Sbjct: 843 PTWSPR 848
>gi|444913614|ref|ZP_21233764.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
gi|444715738|gb|ELW56602.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
Length = 377
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
L T + N PSVSPDG +VF S+R G LY+M A+G + + RLT P D W
Sbjct: 169 LATAREGNFEPSVSPDGSRVVFVSSREGDPELYVMKADGTD---VRRLTHFPREDVAPRW 225
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+WI+F SDRD G +Y++ +GT LR + S + G P +SPDG+ + F
Sbjct: 226 SPDGQWISFLSDRD----GRTRLYVMKADGTELRPVSASATVGDEREPAWSPDGRRLAFV 281
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ S +P T I+ + + G + LT+ + PAW P
Sbjct: 282 A----ASKDPKET------KARIWVVDVAGGEPVALTRGQAVEDQPAWSP 321
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 125/337 (37%), Gaps = 91/337 (27%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
H+E LV + P+ NP +PD S + + Q + +
Sbjct: 107 HMEQLWLVPLDGGPRVKVTEPRGRARNPSWAPDGSWLVAES----------DAQGFSDVV 156
Query: 408 K-SPLPDISLFRF----DGSF-PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK 457
+ +P D + +G+F PS SP G R+ FV P +YV+ +DG++
Sbjct: 157 RQAPRADAEVLGLATAREGNFEPSVSPDGSRVVFVSSREGDPELYVMKADGTD------- 209
Query: 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517
VRRLT + + P
Sbjct: 210 ---------------------------------------------VRRLTHFPREDVAPR 224
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFAS 576
SPDG+WI F S R G LY+M A+G E + T G + WSPDG +AF +
Sbjct: 225 WSPDGQWISFLSDRDGRTRLYVMKADGTELRPVSASATVG--DEREPAWSPDGRRLAFVA 282
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
+P ++++ G L + + + P +SP+GK +VF S+ G
Sbjct: 283 ASKDPKETKARIWVVDVAGGEPVALTRGQAV--EDQPAWSPEGKHLVFASERTGDV---- 336
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
E+F ++ DGS LT + D P W
Sbjct: 337 ----------ELFLMRADGSGQTPLTTSRGADWLPRW 363
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 30/262 (11%)
Query: 294 VYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFD 353
V + + Q LV + +VT P A P+ +P + +A + + ++
Sbjct: 103 VQGLHMEQLWLVPLDGGPRVKVTEPRGRARNPSWAPDGSWLVAE-----SDAQGFSDVVR 157
Query: 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD 413
E+ + + + P +SPD SRV + S+RE +++ + +
Sbjct: 158 QAPRADAEVLGLATAREGNFEPSVSPDGSRVVFV-----SSREGDPELYVMKADGTDVRR 212
Query: 414 ISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV------ 463
++ F + P +SP G I+F+ +YV+ +DG+ R V +A +TV
Sbjct: 213 LTHFPREDVAPRWSPDGQWISFLSDRDGRTRLYVMKADGTELRPV---SASATVGDEREP 269
Query: 464 -WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P + + + AS+ + I V DV G V LT P+ SP+G
Sbjct: 270 AWSPDGRRLAFVA-----ASKDPKETKARIWVVDVAGGEPV-ALTRGQAVEDQPAWSPEG 323
Query: 523 KWIVFRSTRTGYKNLYIMDAEG 544
K +VF S RTG L++M A+G
Sbjct: 324 KHLVFASERTGDVELFLMRADG 345
>gi|168699850|ref|ZP_02732127.1| WD40 domain protein beta Propeller [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 32/236 (13%)
Query: 407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPG------VYVVNSDGSNRRQVYFKN 458
+K LP + FDG + SP G RI +V + G + V +DGS+ + +
Sbjct: 73 MKRLLPGHTEPHFDGHY---SPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHK 129
Query: 459 AF--STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516
AF S + P + V++ S + + D+ ++ G RRLT + + P
Sbjct: 130 AFEESPRFSPDGKTVLWVS------TRNKNPDLYAVTA----GGKGERRLTNDPAYDLHP 179
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+ SPDGK + F S R+G + +++M A +G G+ +LT+G + D+ W PDGE IAFAS
Sbjct: 180 AWSPDGKRVAFASGRSGRQKIHVMSA---DGTGVQKLTDGEFLDSWPVWHPDGERIAFAS 236
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
+R SG+++++L+ +G LR L +G + P ++PDGK + F S GG S
Sbjct: 237 NR----SGNYDIWLMTADGKALRNL--TGHKAQDTSPAWAPDGKKLAFVSTRGGGS 286
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 33/207 (15%)
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN-------AF---PSVSPDGKWIVFR 528
++ + + + + ++ DG + +G +N AF P SPDGK +++
Sbjct: 88 HYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEESPRFSPDGKTVLWV 147
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
STR +LY + A G G RLT P D WSPDG+ +AFAS R SG ++
Sbjct: 148 STRNKNPDLYAVTAGG---KGERRLTNDPAYDLHPAWSPDGKRVAFASGR----SGRQKI 200
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+++ +GTG++KL + P + PDG+ I F S+ G Y +I
Sbjct: 201 HVMSADGTGVQKLTDGEFLD--SWPVWHPDGERIAFASNRSG----------NY----DI 244
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + DG L+ LT + +D +PAW P
Sbjct: 245 WLMTADGKALRNLTGHKAQDTSPAWAP 271
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDT 561
RLT +G SPDGK ++ G L+IM A GGE + RL G P D
Sbjct: 31 RLTKDGSFKQNVQWSPDGKTLLLTRIHEGKMALWIMPAAGGE---MKRLLPGHTEPHFDG 87
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
++SPDG I + D+ G + + +G+ + LI + + P FSPDGK+
Sbjct: 88 --HYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEES--PRFSPDGKT 143
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ +ST ++ +++ + G +RLT + D PAW P
Sbjct: 144 VLW-----------VSTRNKNP---DLYAVTAGGKGERRLTNDPAYDLHPAWSP 183
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGG 477
P++SP G R+AF ++V+++DG+ +++ + VW P E + + S
Sbjct: 179 PAWSPDGKRVAFASGRSGRQKIHVMSADGTGVQKLTDGEFLDSWPVWHPDGERIAFAS-- 236
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ S DI + D A+R LT + + P+ +PDGK + F STR G ++
Sbjct: 237 ----NRSGNYDIWLMTADG----KALRNLTGHKAQDTSPAWAPDGKKLAFVSTRGGGSDI 288
Query: 538 YIMDAE 543
Y++D +
Sbjct: 289 YVLDVK 294
>gi|224107253|ref|XP_002314422.1| predicted protein [Populus trichocarpa]
gi|222863462|gb|EEF00593.1| predicted protein [Populus trichocarpa]
Length = 111
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 80/184 (43%), Gaps = 91/184 (49%)
Query: 164 GVISMKDKPILSGEYLI------YVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVA 217
G I MKDKP +SG+YL+ Y+STHENPG EL+T
Sbjct: 13 GGILMKDKPTVSGDYLVKKERLVYMSTHENPG------------ELRT------------ 48
Query: 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDE 277
S YIFLTRDGT RVK+VE+GGWP WVDE
Sbjct: 49 ------------------------------SWAAYIFLTRDGTNRVKVVEHGGWPTWVDE 78
Query: 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337
S + ++RV P GLHAFTPATSPGN KFIAV
Sbjct: 79 SVI-------------------------------VERVPPSGLHAFTPATSPGNKKFIAV 107
Query: 338 ATRR 341
A RR
Sbjct: 108 AMRR 111
>gi|398385341|ref|ZP_10543364.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
gi|397720685|gb|EJK81239.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
Length = 644
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 229/551 (41%), Gaps = 90/551 (16%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG----VAD-- 218
SM D +LS G L +VST A ++ ++K+G ++LT G AD
Sbjct: 130 SMDDAGVLSPDGRTLAFVSTRNGYR------ANIWVMDVKSGAMKQLTGIGDVRGKADSP 183
Query: 219 ---FSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGG 270
F PA SP GK+ A +S + W DG + ++ I++ R DGT ++ G
Sbjct: 184 DCYFRPAWSPDGKWIAFSSDRDTSWRGHDDGRGWEHTQELSIYVIRADGTGFRQVASRKG 243
Query: 271 W----PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325
W P W D + F+ + E W + + G V ++ VS+ T +
Sbjct: 244 WCLGSPAWSPDGKRIAFYELTTEATWGARRPEWI---GRVESQIVSVDVATGARIEHTNS 300
Query: 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPD 380
A F++ + E+ L+K E + S + +P S D
Sbjct: 301 AGLKVAPHFLS-----------NDEIGYLMKGGPEEGIAYTSGRPGFKRAGLRSPRWSAD 349
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF-- 438
V Y R LL+ + D +R FP S +G +AF E
Sbjct: 350 GKSVFYEVVAFRPVRP------LLKPLYGWDADYE-YRHMDVFPILSRQG-MLAFTEKQL 401
Query: 439 --PGVYVVNSDGSNRRQVY---------------FKNAFSTVWDPVREAVVYTSGGPEFA 481
+ + DGS+RR V+ AF W P E + + G FA
Sbjct: 402 GNSSIVSMKPDGSDRRVVFDASNKGLNPEMVKKGLSGAFQPAWSPDGEWIAFGMG-TWFA 460
Query: 482 SES-SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
S ++ ++ + D S+ LT ++ FPS S DGK IVFR K L ++
Sbjct: 461 ERSYAKATLMRVKADG----SSYEALTDGRVHSGFPSYSADGKEIVFRVWGDDEKGLRVL 516
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ + G+ + LT D + WSPDG+ I F R G+ +F++ I P+G+ L++
Sbjct: 517 NLDTGK---IRVLTTE--LDNLPGWSPDGKRIVFT--RKVNGT-TFQICTIAPDGSDLQQ 568
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
L + H +SPDG+ I+++ G E + +Q YG+I+ + DGSD K
Sbjct: 569 LTHGLES--DGHAVWSPDGR-IMWSGSAHGFRDEAALYDNTFQQYGQIYVMNADGSDKKM 625
Query: 661 LTQNSFEDGTP 671
LT + +ED P
Sbjct: 626 LTDSKWEDSMP 636
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 35/207 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y +DG+ R++ A+ + P + +++TS E + I++ D
Sbjct: 66 LYTAGADGAGERKLLADAAYDYNVTLSPKGDRIIFTS---ERNGDGQSDLFIALP----D 118
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLT--- 554
G S +R+L + +SPDG+ + F STR GY+ N+++MD + G + +LT
Sbjct: 119 G-SGIRQLAQGSSMDDAGVLSPDGRTLAFVSTRNGYRANIWVMDVKSG---AMKQLTGIG 174
Query: 555 --EGPWSDTMC----NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTG 597
G C WSPDG+WIAF+SDRD G +Y+I +GTG
Sbjct: 175 DVRGKADSPDCYFRPAWSPDGKWIAFSSDRDTSWRGHDDGRGWEHTQELSIYVIRADGTG 234
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R+ + S P +SPDGK I F
Sbjct: 235 FRQ-VASRKGWCLGSPAWSPDGKRIAF 260
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
R+L + + ++SP G I+F S R G +L+I +G G+ +L +G D
Sbjct: 77 RKLLADAAYDYNVTLSPKGDRIIFTSERNGDGQSDLFIALPDGS---GIRQLAQGSSMDD 133
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA-GRANHP--YF--- 615
SPDG +AF S R+ + ++++ +++L G G+A+ P YF
Sbjct: 134 AGVLSPDGRTLAFVSTRNGYRA---NIWVMDVKSGAMKQLTGIGDVRGKADSPDCYFRPA 190
Query: 616 -SPDGKSIVFTSDYG-GISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPA 672
SPDGK I F+SD ++ I+ I+ DG+ +++ ++ + G+PA
Sbjct: 191 WSPDGKWIAFSSDRDTSWRGHDDGRGWEHTQELSIYVIRADGTGFRQVASRKGWCLGSPA 250
Query: 673 WGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQ 705
W P R E W+ +Q
Sbjct: 251 WSPDGKRIAFYELTTEATWGARRPEWIGRVESQ 283
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 506 LTTNGKNNAF-PSVSPDGKWIVFRS----TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
+ G + AF P+ SPDG+WI F Y +M + +G LT+G
Sbjct: 431 MVKKGLSGAFQPAWSPDGEWIAFGMGTWFAERSYAKATLMRVKA-DGSSYEALTDGRVHS 489
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
++S DG+ I F D+ + +++ + +R L N P +SPDGK
Sbjct: 490 GFPSYSADGKEIVFRVWGDDEKG----LRVLNLDTGKIRVLTTE----LDNLPGWSPDGK 541
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
IVFT G + + I I DGSDL++LT DG W P
Sbjct: 542 RIVFTRKVNGTTFQ-------------ICTIAPDGSDLQQLTHGLESDGHAVWSP 583
>gi|406916525|gb|EKD55533.1| WD40-like protein Beta Propeller [uncultured bacterium]
Length = 1375
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 160/350 (45%), Gaps = 69/350 (19%)
Query: 342 PTSSYRHIEL-FDLVKNKFIELTRFVSPKTHHLNP-FISPD-----SSRVG---YHKCRG 391
PTSS EL F + K I + ++ K LN IS + SS +G ++ RG
Sbjct: 656 PTSSSTRYELPFTISSTKTI---KAIAIKNGMLNSDIISKEYKLTSSSYIGMIVFNSFRG 712
Query: 392 GS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVY 442
+ DG+NQ +P I+ D FPS+SP G +IAFV P +Y
Sbjct: 713 SNGEIYVMNPDGSNQ-------TP---ITFNSTDDVFPSWSPDGSKIAFVSVRNGNPEIY 762
Query: 443 VVNSDGSNRRQVYFK---NAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
++S+GSN++Q+ F N ST W P +VY ES++ I V +
Sbjct: 763 TMDSNGSNQKQLTFSTQSNCSSTYPKWSPDGSKIVY---------ESNKSGNFEIWVANF 813
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
G + RLT N ++ P SPDG I F S GY LYIM+++G + ++T
Sbjct: 814 TGTQS--RLTFNNASSRTPCWSPDGLRIAFTSNINGYHELYIMNSDGTN---MKQITNNK 868
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+WSPDG+ I F+S++D +E+Y+I N KL + P +SP
Sbjct: 869 AGCLNPSWSPDGQKILFSSNKDT--YDYYEIYVIDLNTNLQTKLTNLNYTSK--FPEWSP 924
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
DG I+F+S G I+ + DG ++ +LT +SF+
Sbjct: 925 DGSKILFSSLAGS--------------SQNIYVMDNDGKNINQLTNSSFD 960
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+T N ++ FPS SPDG I F S R G +Y MD+ G L T+ S T W
Sbjct: 730 ITFNSTDDVFPSWSPDGSKIAFVSVRNGNPEIYTMDSNGSNQKQLTFSTQSNCSSTYPKW 789
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG I + S++ SG+FE+++ + GT R + S + P +SPDG I FT
Sbjct: 790 SPDGSKIVYESNK----SGNFEIWVANFTGTQSRLTFNNAS---SRTPCWSPDGLRIAFT 842
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S+ G Y E++ + DG+++K++T N P+W P
Sbjct: 843 SNING--------------YHELYIMNSDGTNMKQITNNKAGCLNPSWSP 878
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
SPD S++ Y + + GN ++ + N ++ P +SP G RIAF
Sbjct: 790 SPDGSKIVYE------SNKSGNFEIWVANFTGTQSRLTFNNASSRTPCWSPDGLRIAFTS 843
Query: 438 ----FPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
+ +Y++NSDG+N +Q+ A + W P + ++++S + + E+ +I
Sbjct: 844 NINGYHELYIMNSDGTNMKQITNNKAGCLNPSWSPDGQKILFSSNKDTY--DYYEIYVID 901
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+N + +LT + FP SPDG I+F S +N+Y+MD +G ++
Sbjct: 902 LNTN------LQTKLTNLNYTSKFPEWSPDGSKILFSSLAGSSQNIYVMD---NDGKNIN 952
Query: 552 RLTEGPWSDTMCNWS 566
+LT + D +WS
Sbjct: 953 QLTNSSF-DYYASWS 966
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
IVF S R +Y+M+ +G +T D +WSPDG IAF S R+ G
Sbjct: 705 IVFNSFRGSNGEIYVMNPDGSNQ---TPITFNSTDDVFPSWSPDGSKIAFVSVRN----G 757
Query: 585 SFEMYLIHPNGTGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
+ E+Y + NG+ ++L + S + +P +SPDG IV+ S+ G
Sbjct: 758 NPEIYTMDSNGSNQKQLTFSTQSNCSSTYPKWSPDGSKIVYESNKSG------------- 804
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIR 679
EI+ G+ RLT N+ TP W P +R
Sbjct: 805 -NFEIWVANFTGTQ-SRLTFNNASSRTPCWSPDGLR 838
>gi|407915899|gb|EKG09397.1| Six-bladed beta-propeller TolB-like protein [Macrophomina
phaseolina MS6]
Length = 538
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 220/531 (41%), Gaps = 94/531 (17%)
Query: 198 VYSTELKTGLTRRLT-----------PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEM 246
++ TE++TG TR LT P G F+P+ SP G++ +S N W G +
Sbjct: 44 IWLTEIETGHTRNLTNQTGVTGIPESPSGF--FAPSWSPCGQWIVFSSDRNTNWTGHDDG 101
Query: 247 L----STDIYIFLTR-DGTQRVKIVENGGWPCWV--------DESTLFFHRKSEEDDW-- 291
+ + ++ I+ R DGT ++ + P + D + F+ + +D W
Sbjct: 102 IGWEHTQNLSIYAIRPDGTGFREVYND---PAYTHGSPKFSPDGKRIVFYEMTLQDTWDA 158
Query: 292 ISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351
S + V ++ + VS+ T G + S G + T+ +
Sbjct: 159 RSAFNV-----NSMTNQIVSVDFAT--GTNKIQHTNSSGCKLYPQYVTKD--------NI 203
Query: 352 FDLVKNKFIELTRFVSPKTHHLN-----PFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406
LVK E R+ S T ++ P SPD V Y K D ++ L +
Sbjct: 204 GYLVKGGTNEGIRYTSKNTTGISGGMRSPAWSPDGKFVVYEKT-------DWTSRPLEKK 256
Query: 407 IKSPLPDISLFRFDGSFPSFSPKGDRI---AFVEFPGVYVVNSDGSNRRQVY-------- 455
+ S P +RF +FP+ SP+G + + +N DGS+ + V+
Sbjct: 257 LYSWDPAWE-YRFIDTFPNLSPQGKLVYTSKQTSNSSIVTMNPDGSDYKLVFDVDQTNQV 315
Query: 456 --------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
AF W E + + G SS+ I + + D +LT
Sbjct: 316 DMLGVAQGSAGAFQPSWSYDGEWITFGLGTWFQGRYSSKAWIYRVRANGSD----YEQLT 371
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
N N+ FPS SPDG IV+R L ++D E L TE D + +SP
Sbjct: 372 GNTTNSGFPSYSPDGSKIVYR-VFLPEMGLRVLDLATRETTVL--TTE---RDNLPWFSP 425
Query: 568 DGEWIAFASDRDNPGSGSF---EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+GEW+ F + + G F E+ +I PNG+ L L + SA H ++ DG+ I++
Sbjct: 426 NGEWVLFTRNVTDAAQGYFSNYEICVIRPNGSDLTVL--TFSAANDAHATWTADGR-IMW 482
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ G AE + +QPYG I + +DGS+ LT + +ED P + P
Sbjct: 483 STGMWGFQAEAATYDQLFQPYGNIMIMNVDGSNKTMLTNSMWEDSMPLYIP 533
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 517 SVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLT------EGPWSDTMCNWSPDG 569
S+SPDGK+ + ST Y N+++ + E G L T E P +WSP G
Sbjct: 23 SISPDGKFAAYASTAGVYTSNIWLTEIETGHTRNLTNQTGVTGIPESPSGFFAPSWSPCG 82
Query: 570 EWIAFASDRDNPGSG-----------SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
+WI F+SDR+ +G + +Y I P+GTG R+ + + A P FSPD
Sbjct: 83 QWIVFSSDRNTNWTGHDDGIGWEHTQNLSIYAIRPDGTGFRE-VYNDPAYTHGSPKFSPD 141
Query: 619 GKSIVF 624
GK IVF
Sbjct: 142 GKRIVF 147
>gi|170693891|ref|ZP_02885048.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M]
gi|170141309|gb|EDT09480.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M]
Length = 642
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 203/534 (38%), Gaps = 98/534 (18%)
Query: 198 VYSTELKTGLTRRLT---------PYGVADFSPAVSPSGKYTAVASYGNKGWDGE----- 243
V++ L TG +T P+G F P+ SP GK+ A++S W G
Sbjct: 149 VWTLNLSTGALNNVTGSLGFDPTRPHGY--FRPSWSPDGKWLALSSDTGSDWRGHNLPTG 206
Query: 244 -VEMLSTDIYIFLTRDGTQRVKIVENGGW----PCWV-DESTLFFHRKSEEDDW-----I 292
+ IYI + DG+ KI G+ P W D + F+ E W
Sbjct: 207 WERTQESSIYI-VRPDGSGWKKIAGVSGYDEGSPSWSPDGKRVVFYETPVESTWGAHRPE 265
Query: 293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSS--YRHIE 350
S+ V + LVS + S+ R T F N +A + ++ Y
Sbjct: 266 SINSV---SSQLVSVDITSLSRTTLTSTAGFKVFPQYLNAATVAYHVKGGSTEGLYTTAG 322
Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410
F N I R+ SPD +++ Y K R +G
Sbjct: 323 TFHSTANTGIRSPRY------------SPDGTKLVYEKVAFSPARANGT----------- 359
Query: 411 LPDISLFRFDGS--------FPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVY---- 455
LF FD + FP S ++ + E + V N + S ++Y
Sbjct: 360 ----PLFSFDPAWKYIYLDVFPQLSRDRAKLVYTEKAINSSIAVANPNLSGYTRIYDPAT 415
Query: 456 -----------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504
AF W P R+ V + G F + I+ I D A
Sbjct: 416 SGLDPAAIAQGLAGAFQPAWSPDRQWVAFGVGNWFFTRSTGPAQIMRIRADGSMNGQA-E 474
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
LT N+ FPS SPDGK +V+R + L I+D LT G +D +
Sbjct: 475 ALTDGSINSGFPSYSPDGKKLVYRVWSDAVQGLRILDL---ATRSTTVLTSG--ADNLPG 529
Query: 565 WSPDGEWIAFAS---DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
WSPDG I F D NP +++++ I P+GTGL +L GS H ++ DG+
Sbjct: 530 WSPDGSRIVFTRKQIDATNPNRFNYDVFTIRPDGTGLTRLTTDGS--NQGHAVWTWDGR- 586
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I ++S G E + +QP G+ + + DGS+ + +T +E+ P + P
Sbjct: 587 IAYSSGTYGFRDELALYDNSFQPDGQNWVMNADGSNQRPITDTLWEEAMPLYIP 640
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 37/241 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYG 549
+ + + DG + R+L + + S S DG+W+VF S R G NLY + +G G
Sbjct: 53 LYISNADG-TGERKLIPSTGFDYHASFSKDGQWLVFTSERDGAGQSNLYRVKV---DGTG 108
Query: 550 LHRLTEGPWSDTMCNWSP-DGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
L RLT+ D +SP D IAF S R N G G+ ++ ++ + L + +GS
Sbjct: 109 LERLTDHIAVDDAAVFSPTDPNVIAFVSSRRGNDGFGTTNVWTLNLSTGALNNV--TGSL 166
Query: 608 G---RANHPYF----SPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
G H YF SPDGK + +SD G + T + I+ ++ DGS K
Sbjct: 167 GFDPTRPHGYFRPSWSPDGKWLALSSDTGSDWRGHNLPTGWERTQESSIYIVRPDGSGWK 226
Query: 660 RLTQNS-FEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQ 718
++ S +++G+P+W P R V ETP + WGA PE +
Sbjct: 227 KIAGVSGYDEGSPSWSPDGKRVV-----------------FYETPVESTWGAH-RPESIN 268
Query: 719 C 719
Sbjct: 269 S 269
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
S E+Y+ + +GTG RKLI S G H FS DG+ +VFTS+ G
Sbjct: 50 SSELYISNADGTGERKLIP--STGFDYHASFSKDGQWLVFTSERDGAGQS---------- 97
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++++K+DG+ L+RLT + D + P
Sbjct: 98 --NLYRVKVDGTGLERLTDHIAVDDAAVFSP 126
>gi|430747747|ref|YP_007206876.1| Tol biopolymer transport system periplasmic protein [Singulisphaera
acidiphila DSM 18658]
gi|430019467|gb|AGA31181.1| periplasmic component of the Tol biopolymer transport system
[Singulisphaera acidiphila DSM 18658]
Length = 311
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 36/267 (13%)
Query: 419 FDGSFPSFSPKGDRIAFVEFPG--------VYVVNSDGSNRRQVYFKNA--FSTVWDPVR 468
D PS++P G ++ F V + S S R++ + A ++ V+ P
Sbjct: 45 LDKQRPSWAPDGHQLLFARHESGGSRIWEYVLDLRSPSSPARRLTDRKAPEYNGVFSPDG 104
Query: 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528
VV+T+ + +D+ +I D G+ V N + +PS SPDG+ F
Sbjct: 105 SRVVFTA--ITLSGTQGNLDLAAIQADGT-GLKTVVADQGNLAHQDWPSWSPDGQRFAFS 161
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
ST G + +Y A+G + L RLT+ P D WSPDG+ IAFA+DR E+
Sbjct: 162 STHEGNQEIYTAKADGSD---LIRLTQSPGLDAHPCWSPDGQVIAFATDRWE----GLEL 214
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ P+GTGL++L +S G ++P FSPDG + F S+ G Q+ E+
Sbjct: 215 AAVRPDGTGLQRLTRS--PGLDDYPAFSPDGAWLAFVSNRDG----------QF----EV 258
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGS + +Q+ D P W P
Sbjct: 259 YLAGADGSAPRNFSQHPHRDTFPTWTP 285
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 96/215 (44%), Gaps = 26/215 (12%)
Query: 426 FSPKGDRIAFVEFP--------GVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTS 475
FSP G R+ F + + +DG+ + V N W ++
Sbjct: 100 FSPDGSRVVFTAITLSGTQGNLDLAAIQADGTGLKTVVADQGNLAHQDWP------SWSP 153
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G FA S+ I DG S + RLT + +A P SPDG+ I F + R ++
Sbjct: 154 DGQRFAFSSTHEGNQEIYTAKADG-SDLIRLTQSPGLDAHPCWSPDGQVIAFATDR--WE 210
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
L + A +G GL RLT P D +SPDG W+AF S+RD G FE+YL +G
Sbjct: 211 GLELA-AVRPDGTGLQRLTRSPGLDDYPAFSPDGAWLAFVSNRD----GQFEVYLAGADG 265
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ R Q R P ++PDG+ I F S+ G
Sbjct: 266 SAPRNFSQ--HPHRDTFPTWTPDGRGITFVSNRDG 298
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSD 560
V RLT +G + PS +PDG ++F +G + Y++D RLT+ +
Sbjct: 37 VVRLTHDGLDKQRPSWAPDGHQLLFARHESGGSRIWEYVLDLRSPSSPA-RRLTDRKAPE 95
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRANHPYFSPDG 619
+SPDG + F + + G+ ++ I +GTGL+ ++ G+ + P +SPDG
Sbjct: 96 YNGVFSPDGSRVVFTAITLSGTQGNLDLAAIQADGTGLKTVVADQGNLAHQDWPSWSPDG 155
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ F+S + G EI+ K DGSDL RLTQ+ D P W P
Sbjct: 156 QRFAFSSTHEGNQ--------------EIYTAKADGSDLIRLTQSPGLDAHPCWSP 197
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 101/268 (37%), Gaps = 37/268 (13%)
Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY 235
G L++ + HE+ G+ W V + RRLT +++ SP G +
Sbjct: 56 GHQLLF-ARHESGGS--RIWEYVLDLRSPSSPARRLTDRKAPEYNGVFSPDGSRVVFTAI 112
Query: 236 GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG------WPCWVDESTLFFHRKSEED 289
G G +++ + + DGT +V + G WP W + F + E
Sbjct: 113 TLSGTQGNLDLAA------IQADGTGLKTVVADQGNLAHQDWPSWSPDGQRFAFSSTHEG 166
Query: 290 DWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349
+ +Y + L I+ PGL A P SP + + IA AT R + +
Sbjct: 167 N-QEIYTAKADGSDL-------IRLTQSPGLDAH-PCWSP-DGQVIAFATDR----WEGL 212
Query: 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
EL V+ L R P SPD + + + R DG ++ L
Sbjct: 213 ELA-AVRPDGTGLQRLTRSPGLDDYPAFSPDGAWLAFVSNR------DGQFEVYLAGADG 265
Query: 410 PLP-DISLFRFDGSFPSFSPKGDRIAFV 436
P + S +FP+++P G I FV
Sbjct: 266 SAPRNFSQHPHRDTFPTWTPDGRGITFV 293
>gi|392373583|ref|YP_003205416.1| protein tolB [Candidatus Methylomirabilis oxyfera]
gi|258591276|emb|CBE67573.1| Protein tolB precursor [Candidatus Methylomirabilis oxyfera]
Length = 450
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
P +SP G +IA+ + P ++VV+ + R+++ + W P + +V++
Sbjct: 213 PRWSPDGKKIAYTSYRDHNPDLFVVDLETGRRQKISSNPGLNVAPAWSPNGKWLVFS--- 269
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + ++ I D + +R+LT + PS +P+G+ IVF S R G +
Sbjct: 270 ---MSSGTGTNLFLIRPD----ATGLRQLTQGPHIDISPSFAPNGRQIVFSSDRGGTPQI 322
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y+MD EG + RLT G ++ WSP G+ I F GSF+++LI+P+GT
Sbjct: 323 YLMDVEGTN---IRRLTFGVGDYSVSPRWSPRGDKITFVGRT----RGSFDIFLINPDGT 375
Query: 597 GLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL +L S R N P +S DG+ ++FTS G H++ ++ +K DG
Sbjct: 376 GLTQLT---SNSRNNEEPSWSADGRHLLFTSTRNG---------HRH-----LYVMKADG 418
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
SD ++LT+N E+ W P
Sbjct: 419 SDQRQLTKNGQENYLADWSP 438
>gi|295841255|dbj|BAJ07029.1| WD40-like beta propeller protein [uncultured bacterium]
Length = 328
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 127/266 (47%), Gaps = 36/266 (13%)
Query: 422 SFPSFSPKGDRIAFV----EFP-GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYT 474
S P++SP G IA+V EF +Y++ +DGSN ++ T WDP ++V++
Sbjct: 87 SKPAWSPDGKSIAYVVTDEEFNVDIYLMKADGSNPARLTTDRWVDTEPAWDPTGGSIVFS 146
Query: 475 SGGPEFAS--ESSEVDII---SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
S + + + +++ I V D +G S LT + + P+ SPDG I F+S
Sbjct: 147 SDRDSYLNIEDGKTYEMVYEFEIYVMDANG-SGQTNLTDSPGWDTAPAWSPDGGQIAFQS 205
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+R +Y+MDA+G LT P D WSPDG AF SDR +G F +Y
Sbjct: 206 SRDENPEIYMMDADGSRQV---NLTNHPEDDAAPAWSPDGSKTAFHSDR----TGVFNIY 258
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
++ +GTGL +L + S P ++PDG+ I F S G EI+
Sbjct: 259 VMETDGTGLVQL--TSSPDWDIQPAWAPDGQHIAFYSGQEGNF--------------EIY 302
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGS RLT + DG P W P
Sbjct: 303 VMNADGSCQMRLTYHGDFDGFPDWRP 328
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 362 LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFD 420
LTR + P SPD + Y T E+ N + L P ++ R+
Sbjct: 76 LTRLTHDEERLSKPAWSPDGKSIAYVV-----TDEEFNVDIYLMKADGSNPARLTTDRWV 130
Query: 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAF--------------STVWDP 466
+ P++ P G I F Y+ DG VY + S WD
Sbjct: 131 DTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYEFEIYVMDANGSGQTNLTDSPGWD- 189
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
A ++ G + A +SS + I + D DG V LT + +++A P+ SPDG
Sbjct: 190 --TAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQVN-LTNHPEDDAAPAWSPDGSKTA 246
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F S RTG N+Y+M+ +G GL +LT P D W+PDG+ IAF S ++ G+F
Sbjct: 247 FHSDRTGVFNIYVMET---DGTGLVQLTSSPDWDIQPAWAPDGQHIAFYSGQE----GNF 299
Query: 587 EMYLIHPNGTGLRKLIQSG 605
E+Y+++ +G+ +L G
Sbjct: 300 EIYVMNADGSCQMRLTYHG 318
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 480 FAS-ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NL 537
FAS E +I S+N D +A+ RLT + + + P+ SPDGK I + T + ++
Sbjct: 56 FASYRDGESEIYSVNADG----TALTRLTHDEERLSKPAWSPDGKSIAYVVTDEEFNVDI 111
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD---NPGSGS-------FE 587
Y+M A+G RLT W DT W P G I F+SDRD N G FE
Sbjct: 112 YLMKADGSN---PARLTTDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYEFE 168
Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
+Y++ NG+G L S G P +SPDG I F S P E
Sbjct: 169 IYVMDANGSGQTNLTDS--PGWDTAPAWSPDGGQIAFQSS------------RDENP--E 212
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+ + DGS LT + +D PAW P
Sbjct: 213 IYMMDADGSRQVNLTNHPEDDAAPAWSP 240
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+AFAS RD G E+Y ++ +GT L +L R + P +SPDGKSI +
Sbjct: 54 LAFASYRD----GESEIYSVNADGTALTRLTHDEE--RLSKPAWSPDGKSIAY------- 100
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ T ++ +I+ +K DGS+ RLT + + D PAW P
Sbjct: 101 ----VVTDEEFNV--DIYLMKADGSNPARLTTDRWVDTEPAWDP 138
>gi|374852052|dbj|BAL54994.1| TolB protein [uncultured planctomycete]
Length = 289
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 125/265 (47%), Gaps = 37/265 (13%)
Query: 378 SPDSSRVGYHKCRGGSTR----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
SPD SR+ + + G + QL + PD FD P++ P G R+
Sbjct: 40 SPDGSRIVFTRIHEGKMSLWLLHIASRQLTRLTSRDTGPD-----FD---PAWFPDGKRL 91
Query: 434 AFV--EFPG------VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
A+V + G +Y ++SDGSN + AF E + G S+
Sbjct: 92 AYVYDQLQGTDGKLFIYTLDSDGSNPTVLIPNKAFE-------ECPRVSPNGQHLLFVST 144
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I + DV G + +RRL+ + + P SPDGK I F S R+G ++++M+A+G
Sbjct: 145 RDGNQEIYLADVTGKN-IRRLSNHPAPDTHPCWSPDGKRIAFASARSGNWDIWVMNADGS 203
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
E RLT+ P D W+PDG +AF S+RD G++E+YLI P+GT L + S
Sbjct: 204 E---TRRLTDHPALDCWPVWAPDGRRLAFTSNRD----GNYEIYLIRPDGTALHNV--SH 254
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGG 630
S + +SPD + + F S G
Sbjct: 255 SPAWEHFATWSPDSRRLAFVSTCSG 279
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
V +S D ++ +RLT +G A + SPDG IVF G +L+++ +
Sbjct: 8 VGTVSFARSDQAYPTSWQRLTEDGDYKAHLAWSPDGSRIVFTRIHEGKMSLWLLHIASRQ 67
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L GP D W PDG+ +A+ D+ G +Y + +G+ LI + +
Sbjct: 68 LTRLTSRDTGP--DFDPAWFPDGKRLAYVYDQLQGTDGKLFIYTLDSDGSNPTVLIPNKA 125
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
P SP+G+ ++F S G EI+ + G +++RL+ +
Sbjct: 126 FEEC--PRVSPNGQHLLFVSTRDGNQ--------------EIYLADVTGKNIRRLSNHPA 169
Query: 667 EDGTPAWGP 675
D P W P
Sbjct: 170 PDTHPCWSP 178
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 50/204 (24%)
Query: 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI------ 407
L+ NK E VSP HL F+S TR DGN ++ L ++
Sbjct: 120 LIPNKAFEECPRVSPNGQHL-LFVS---------------TR-DGNQEIYLADVTGKNIR 162
Query: 408 ---KSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF 460
P PD + P +SP G RIAF ++V+N+DGS R++ A
Sbjct: 163 RLSNHPAPD--------THPCWSPDGKRIAFASARSGNWDIWVMNADGSETRRLTDHPAL 214
Query: 461 ST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
VW P + +TS + +I I D +A+ ++ + F +
Sbjct: 215 DCWPVWAPDGRRLAFTS------NRDGNYEIYLIRPDG----TALHNVSHSPAWEHFATW 264
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDA 542
SPD + + F ST +G ++Y++D
Sbjct: 265 SPDSRRLAFVSTCSGGYDIYVVDC 288
>gi|197119875|ref|YP_002140302.1| TolB-like biopolymer transport periplasmic beta-propeller repeat
protein [Geobacter bemidjiensis Bem]
gi|197089235|gb|ACH40506.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter bemidjiensis Bem]
Length = 407
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 48/260 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYV------VNSDGSNRRQVYFKNAFSTVWDPVREAVVY 473
P F+P G I + + P +Y + + S+R + A+S D + A+V
Sbjct: 182 PDFAPSGKEIIYTSYKKGNPDLYRRELFTGLEARISSRSGLNATGAYSP--DGSKIAMVM 239
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
+ G +SE+ +IS ++ RLT N + P+ SPDG IVF S R G
Sbjct: 240 SKDG------NSEIYLISREGKEL------ARLTNNHAIDVSPAWSPDGSRIVFVSDRLG 287
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
++IM+A+GG +HRLT + WSP G+ I +A G G F++Y I+
Sbjct: 288 KPQVFIMNADGGN---VHRLTANGAYNVTPRWSPKGDRIVYARQ----GGGGFQIYAINA 340
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+GT +L SAG HP FSPDG+ IVF+S G A I+ ++
Sbjct: 341 DGTQDTQLT---SAGSNEHPRFSPDGRFIVFSSTRDGAEA--------------IYLMRA 383
Query: 654 DGSDLKRLTQNSFEDGTPAW 673
DGS R++ N ++ P W
Sbjct: 384 DGSGQTRVSPNKSQNSHPTW 403
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 35/262 (13%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
QR+T G P +P + I + ++ ELF ++ R S +
Sbjct: 170 QRLTNNGSINLNPDFAPSGKEIIYTSYKKGNPDLYRRELFTGLE------ARISSRSGLN 223
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD S++ + DGN+++ L+ L ++ P++SP G
Sbjct: 224 ATGAYSPDGSKIAMVMSK------DGNSEIYLISREGKELARLTNNHAIDVSPAWSPDGS 277
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYT-SGGPEFASES 484
RI FV P V+++N+DG N ++ A++ W P + +VY GG F
Sbjct: 278 RIVFVSDRLGKPQVFIMNADGGNVHRLTANGAYNVTPRWSPKGDRIVYARQGGGGF---- 333
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I +IN D +LT+ G N P SPDG++IVF STR G + +Y+M A+G
Sbjct: 334 ---QIYAINADGTQDT----QLTSAGSNE-HPRFSPDGRFIVFSSTRDGAEAIYLMRADG 385
Query: 545 GEGYGLHRLTEGPWSDTMCNWS 566
G R++ ++ WS
Sbjct: 386 S---GQTRVSPNKSQNSHPTWS 404
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 34/195 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I V D DG + +RLT NG N P +P GK I++ S + G +LY + G
Sbjct: 159 IFVMDYDGHNP-QRLTNNGSINLNPDFAPSGKEIIYTSYKKGNPDLYRRELFTGL---EA 214
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
R++ + +SPDG IA +D G+ E+YLI G L +L N
Sbjct: 215 RISSRSGLNATGAYSPDGSKIAMVMSKD----GNSEIYLISREGKELARLTN-------N 263
Query: 612 H-----PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
H P +SPDG IVF SD G +P ++F + DG ++ RLT N
Sbjct: 264 HAIDVSPAWSPDGSRIVFVSDRLG------------KP--QVFIMNADGGNVHRLTANGA 309
Query: 667 EDGTPAWGPRFIRPV 681
+ TP W P+ R V
Sbjct: 310 YNVTPRWSPKGDRIV 324
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGS 583
I + + +G K +++MD +G + RLT + +++P G+ I + S + NP
Sbjct: 147 IAYVTKASGNKEIFVMDYDG---HNPQRLTNNGSINLNPDFAPSGKEIIYTSYKKGNPDL 203
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
E++ TGL I S S A Y SPDG I G S
Sbjct: 204 YRRELF------TGLEARISSRSGLNATGAY-SPDGSKIAMVMSKDGNS----------- 245
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
EI+ I +G +L RLT N D +PAW P R V V +
Sbjct: 246 ---EIYLISREGKELARLTNNHAIDVSPAWSPDGSRIVFVSD 284
>gi|253702172|ref|YP_003023361.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter sp. M21]
gi|251777022|gb|ACT19603.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp.
M21]
Length = 407
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 122/260 (46%), Gaps = 48/260 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYV------VNSDGSNRRQVYFKNAFSTVWDPVREAVVY 473
P F+P G I + + P +Y + + S+R + A+S D + A+V
Sbjct: 182 PDFAPSGKEIIYTSYKKGNPDLYRRELFTGLEARISSRNGLNAMGAYSP--DGGKIAMVM 239
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
+ G +SE+ +IS ++ RLT N + P+ SPDG I F S R G
Sbjct: 240 SKDG------NSEIYLISREGKELA------RLTNNHAIDVSPAWSPDGSRIAFVSDRLG 287
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+++M+A+GG L RLT + WSP G+ IA+A G G F+++ I+P
Sbjct: 288 KPQVFVMNADGGN---LRRLTTNGAYNVTPRWSPKGDRIAYARQ----GGGGFQIHAINP 340
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+GT + Q SAG HP FSPDG+ IVF+S G A I+ ++
Sbjct: 341 DGT---QDTQLTSAGSNEHPRFSPDGRFIVFSSTRDGAEA--------------IYLMRA 383
Query: 654 DGSDLKRLTQNSFEDGTPAW 673
DGS R++ N ++ P W
Sbjct: 384 DGSGQTRVSPNKAQNSHPTW 403
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 107/238 (44%), Gaps = 43/238 (18%)
Query: 448 GSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN----VDDVDGVSAV 503
GS++ +AFS D V AV G F + + V IS N V D DG +
Sbjct: 116 GSSKELRRMGHAFS---DEVLRAVTGEKG--PFTGKIAYVTKISGNKEIFVMDYDGRNP- 169
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
+RLT NG N P +P GK I++ S + G +LY + G R++ + M
Sbjct: 170 QRLTNNGSINLKPDFAPSGKEIIYTSYKKGNPDLYRRELFTGL---EARISSRNGLNAMG 226
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-----PYFSPD 618
+SPDG IA +D G+ E+YLI G L +L NH P +SPD
Sbjct: 227 AYSPDGGKIAMVMSKD----GNSEIYLISREGKELARLTN-------NHAIDVSPAWSPD 275
Query: 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
G I F SD G +P ++F + DG +L+RLT N + TP W P+
Sbjct: 276 GSRIAFVSDRLG------------KP--QVFVMNADGGNLRRLTTNGAYNVTPRWSPK 319
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 35/262 (13%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
QR+T G P +P + I + ++ ELF ++ R S +
Sbjct: 170 QRLTNNGSINLKPDFAPSGKEIIYTSYKKGNPDLYRRELFTGLE------ARISSRNGLN 223
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD ++ + DGN+++ L+ L ++ P++SP G
Sbjct: 224 AMGAYSPDGGKIAMVMSK------DGNSEIYLISREGKELARLTNNHAIDVSPAWSPDGS 277
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYT-SGGPEFASES 484
RIAFV P V+V+N+DG N R++ A++ W P + + Y GG F
Sbjct: 278 RIAFVSDRLGKPQVFVMNADGGNLRRLTTNGAYNVTPRWSPKGDRIAYARQGGGGF---- 333
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I +IN D +LT+ G +N P SPDG++IVF STR G + +Y+M A+G
Sbjct: 334 ---QIHAINPDGTQDT----QLTSAG-SNEHPRFSPDGRFIVFSSTRDGAEAIYLMRADG 385
Query: 545 GEGYGLHRLTEGPWSDTMCNWS 566
G R++ ++ WS
Sbjct: 386 S---GQTRVSPNKAQNSHPTWS 404
>gi|374853279|dbj|BAL56191.1| TolB protein [uncultured candidate division OP1 bacterium]
gi|374857082|dbj|BAL59935.1| TolB protein [uncultured candidate division OP1 bacterium]
Length = 280
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 43/265 (16%)
Query: 419 FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG-G 477
F+ P +SP G +I FV SD ++Y + V D R V S G
Sbjct: 27 FNDWAPDWSPDGTKIVFV---------SDRDGNSEIYLL-TLTPVTDLKRLTVQPGSDLG 76
Query: 478 PEFASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
P F+ + +++ S I + + DG S V RLT +G + P+ +PDGK I+ S
Sbjct: 77 PRFSPDGTKIAFYSSRDGNYEIYLMNADG-SGVTRLTQHGATDWDPNWTPDGK-ILLESF 134
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
R G+ +LY++D G L RLT+ PW + WSP + I FAS R+ GS+++Y
Sbjct: 135 RDGWPDLYLLDPLTGI---LERLTQDPWREAFPAWSPKNDKIVFASYRE----GSWDLYA 187
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
+ PNG +KL R+ P +S DG+ IVF + G S +I +
Sbjct: 188 MRPNGLVRQKLTDGNGIYRS--PTWSRDGRFIVFEAVRGDES--------------DIAR 231
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
I DG L LT++ + D +P+ P
Sbjct: 232 IDADGQHLTWLTRDIYRDSSPSLSP 256
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 499 GVSAVRRLTTNGK------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
G+S V L++ G+ N+ P SPDG IVF S R G +Y++ L R
Sbjct: 9 GMSVVLALSSLGQTQPKDFNDWAPDWSPDGTKIVFVSDRDGNSEIYLLTLT--PVTDLKR 66
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
LT P SD +SPDG IAF S RD G++E+YL++ +G+G+ +L Q G+
Sbjct: 67 LTVQPGSDLGPRFSPDGTKIAFYSSRD----GNYEIYLMNADGSGVTRLTQHGATDW--D 120
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
P ++PDGK ++ + G + +++ + L+RLTQ+ + + PA
Sbjct: 121 PNWTPDGKILLESFRDG---------------WPDLYLLDPLTGILERLTQDPWREAFPA 165
Query: 673 WGPR 676
W P+
Sbjct: 166 WSPK 169
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 114/289 (39%), Gaps = 64/289 (22%)
Query: 303 GLVSTESV-----SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357
GL+ SV S+ + P + + P SP K + V+ R S E++ L
Sbjct: 5 GLIVGMSVVLALSSLGQTQPKDFNDWAPDWSPDGTKIVFVSDRDGNS-----EIYLLTLT 59
Query: 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-----TREDG-------------- 398
+L R L P SPD +++ ++ R G+ DG
Sbjct: 60 PVTDLKRLTVQPGSDLGPRFSPDGTKIAFYSSRDGNYEIYLMNADGSGVTRLTQHGATDW 119
Query: 399 ------NNQLLLENIKSPLPDISLFR-------------FDGSFPSFSPKGDRIAFVEFP 439
+ ++LLE+ + PD+ L + +FP++SPK D+I F +
Sbjct: 120 DPNWTPDGKILLESFRDGWPDLYLLDPLTGILERLTQDPWREAFPAWSPKNDKIVFASYR 179
Query: 440 ----GVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFASESSEVDIISIN 493
+Y + +G R+++ N S W +V+ A E DI I
Sbjct: 180 EGSWDLYAMRPNGLVRQKLTDGNGIYRSPTWSRDGRFIVFE------AVRGDESDIARI- 232
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D DG + LT + ++ PS+SPDG+ IV+ S R + L I D
Sbjct: 233 --DADG-QHLTWLTRDIYRDSSPSLSPDGRRIVYTSLRGEHYRLVIKDV 278
>gi|49234796|gb|AAT57937.1| putative protein [Gossypium hirsutum]
Length = 109
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTL 280
P S + +ASYG++ W+G+ L TDI +F T D R+ + + GGWP W +ST+
Sbjct: 2 PLASYGSRLGPLASYGSRPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTI 61
Query: 281 FFHRKSEEDDWISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAFTPA 326
FFHR++ +D W S+++V P+ L +E V R+TPPGLH F+PA
Sbjct: 62 FFHRQT-DDGWWSIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPA 107
>gi|407916847|gb|EKG10177.1| Six-bladed beta-propeller TolB-like protein [Macrophomina
phaseolina MS6]
Length = 642
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 156/627 (24%), Positives = 241/627 (38%), Gaps = 132/627 (21%)
Query: 104 PPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNG 163
P +I+ TERNG N D R + T LE+ A S
Sbjct: 88 PDGQWIIFTTERNGDGNS-------DIYRVHTNGTGLEKLVASSS--------------- 125
Query: 164 GVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVAD--- 218
++D LS G L YVST G W +T +T LT + GVA
Sbjct: 126 ----VEDAGALSPDGTKLAYVSTAN--GYKANIWVKDLTTGTETNLTNTESVTGVATSPD 179
Query: 219 --FSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKIVENG-- 269
F PA SP G++ A +S N W G + ++ +++ + DGT K+
Sbjct: 180 GYFRPAWSPDGEWLAFSSDRNTAWTGHGNGTGWEHTQELSVYVIKPDGTGFRKLATKKDY 239
Query: 270 --GWPCWV-DESTLFFHRKSEEDDWISVYKVILPQT-GLVSTESVSIQRVTPPGLHAFTP 325
G P W D + ++ + E+ W P++ VS++ VS+ T T
Sbjct: 240 CLGSPKWSPDGKRVVYYEVTRENTW----GAHRPESVASVSSQIVSVDFATGTDRVEHTS 295
Query: 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-------PKTHHLNPFIS 378
+S + E+ LVK E + S K +P S
Sbjct: 296 GSS----------LKMFPQYVSDTEVGFLVKGGDEEGLNYTSYADGRAQVKASIRSPAWS 345
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF 438
PD +V Y K + +E D +RF FP S +G ++A +
Sbjct: 346 PDGKKVVYEKVDFAARP--------METKLYSWDDEWEYRFTDVFPMLSLQG-KLAITQK 396
Query: 439 ----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSGGP 478
+ +N DG+N V+ AF W P + + + G
Sbjct: 397 QLGNSSIVTMNPDGTNEFTVFDTYSTGEVDSSLVSQGLAGAFQPTWSPDGKWIAFGLG-Q 455
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGK----------NNAFPSVSPDGKWIVFR 528
F S ++ G + V R T+NG ++ FPS S DG+++VFR
Sbjct: 456 WFQSRAT-------------GKAKVYRATSNGSYYEALTDGTVHSGFPSYSADGRYLVFR 502
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
Y L I+D + + LT +D + WSPDGE I F + + +F++
Sbjct: 503 EWGVRY-GLRIIDLQDKS---MRFLTNA--TDNLPGWSPDGERIVFTRKMN---ATNFDV 553
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
I P+GT L+ L SG+ H ++ DG+ I F++ G E +QPYG+I
Sbjct: 554 CTIRPDGTDLQVLTSSGA--NDAHAVWTADGR-IAFSTGMYGFRDEAAIYDQTFQPYGQI 610
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGS + +T + +ED P + P
Sbjct: 611 MIMDADGSSKRLITDSIWEDSMPLYVP 637
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 30/205 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ +SDGSN R++ ++ + + P + +++T+ + DI ++ +
Sbjct: 60 LYIADSDGSNERKLLGNSSVFEYHASFSPDGQWIIFTTE----RNGDGNSDIYRVHTNG- 114
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHR---- 552
+ + +L + ++SPDG + + ST GYK N+++ D G L
Sbjct: 115 ---TGLEKLVASSSVEDAGALSPDGTKLAYVSTANGYKANIWVKDLTTGTETNLTNTESV 171
Query: 553 --LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGLR 599
+ P WSPDGEW+AF+SDR+ +G +Y+I P+GTG R
Sbjct: 172 TGVATSPDGYFRPAWSPDGEWLAFSSDRNTAWTGHGNGTGWEHTQELSVYVIKPDGTGFR 231
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
KL + P +SPDGK +V+
Sbjct: 232 KLATKKDYCLGS-PKWSPDGKRVVY 255
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 61/222 (27%)
Query: 519 SPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+PD K ++F + R G LYI D++G L L + ++SPDG+WI F +
Sbjct: 41 APDKKGVLFMN-RIGPSTSELYIADSDGSNERKL--LGNSSVFEYHASFSPDGQWIIFTT 97
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGS---AG------------------RAN---- 611
+R+ G G+ ++Y +H NGTGL KL+ S S AG +AN
Sbjct: 98 ERN--GDGNSDIYRVHTNGTGLEKLVASSSVEDAGALSPDGTKLAYVSTANGYKANIWVK 155
Query: 612 ---------------------------HPYFSPDGKSIVFTSDYG-GISAEPISTPHQYQ 643
P +SPDG+ + F+SD + T ++
Sbjct: 156 DLTTGTETNLTNTESVTGVATSPDGYFRPAWSPDGEWLAFSSDRNTAWTGHGNGTGWEHT 215
Query: 644 PYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGPRFIRPVDVE 684
++ IK DG+ ++L T+ + G+P W P R V E
Sbjct: 216 QELSVYVIKPDGTGFRKLATKKDYCLGSPKWSPDGKRVVYYE 257
>gi|418054432|ref|ZP_12692488.1| Protein tolB [Hyphomicrobium denitrificans 1NES1]
gi|353212057|gb|EHB77457.1| Protein tolB [Hyphomicrobium denitrificans 1NES1]
Length = 445
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P V+++N + R V + F+ + P + VV + G
Sbjct: 216 PRFSPTNQEITYMSYTSDQPKVFIMNLETGRRELVGDFPGMTFAPRFSPDGQRVVMSLGT 275
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ S E+D+ + RRLT + + PS SPDG+ IVF S R G + L
Sbjct: 276 PDGRSSIYEMDLRT---------RQSRRLTESNGIDTSPSYSPDGRQIVFESDRDGAQRL 326
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G H +++G S + WSP G++IAF G F + ++ P+G+G
Sbjct: 327 YVMNADGS---GAHPISQGGGSYSTPVWSPRGDYIAFTEQT----GGQFLIGVMKPDGSG 379
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F D + P +I+ + + G
Sbjct: 380 ERVLTE----GFHNEGPTWAPNGRVVMFWRDSQSTNGGP-----------KIYSVDITGF 424
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++T SF PAW P
Sbjct: 425 NERQVTTPSFAS-DPAWSP 442
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + RL T GK P SP + I + S + ++IM+ E G
Sbjct: 193 LAIMDQDGANV--RLLTQGKELVLTPRFSPTNQEITYMSYTSDQPKVFIMNLETGR---R 247
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ + P +SPDG+ + + + S +EM L R+L +S G
Sbjct: 248 ELVGDFPGMTFAPRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQS---RRLTESN--GID 302
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG+ IVF SD G ++ + DGS ++Q T
Sbjct: 303 TSPSYSPDGRQIVFESDRDGAQ--------------RLYVMNADGSGAHPISQGGGSYST 348
Query: 671 PAWGPR 676
P W PR
Sbjct: 349 PVWSPR 354
>gi|221212545|ref|ZP_03585522.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1]
gi|221167644|gb|EEE00114.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1]
Length = 640
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 122/283 (43%), Gaps = 32/283 (11%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVY---------------FKN 458
+RF FP S G + + E + V ++D S+ R +Y
Sbjct: 368 YRFVDVFPQLSRDGKSLVYTEKAVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGLAG 427
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPS 517
AF W P ++ VV+ G F I I D ++ + T+GK NA FPS
Sbjct: 428 AFQPTWSPDKQWVVFGVGSWFFTRAHMPGRIARIRADG--SMNGKPEILTDGKENAGFPS 485
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
SPDG IV+R K L I+D + LT P D + WSPDG I F
Sbjct: 486 YSPDGTRIVYRVWSETDKGLRILDLNTRK---TMVLTTEP--DNLPGWSPDGTRIVFTRK 540
Query: 578 RDNPGSGS---FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
NP + F++Y I P+GT +R+L G+ H ++ DG+ I ++S G E
Sbjct: 541 EVNPNDANKFHFDVYTIKPDGTDVRRLTPPGA--NQAHATWTWDGR-IAYSSGEYGFRDE 597
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
+QP G+ + + DGSD +T +ED P + P+
Sbjct: 598 LSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIPKL 640
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 39/240 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYG 549
+ + + DG S RL +G + S SPDGKW+VF S R G+ +LY + +G G
Sbjct: 50 LYIANADG-SDEHRLIASGGFDYHGSFSPDGKWVVFTSERDGLGHASLYRVRI---DGTG 105
Query: 550 LHRLTEGPW---SDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKL---- 601
L RLT+ W SD D + IAF S RDN G+ ++ ++ L +
Sbjct: 106 LQRLTD--WTGVSDAAVYDPADPDVIAFVSSRRDNDTWGTTNIWTLNLKTGALHNVTGDI 163
Query: 602 -IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE--IFKIKLDGSDL 658
P +SPDGK I F+SD G + P ++ E I++I+ DG+
Sbjct: 164 RFDPDKPHSFFRPSWSPDGKWIAFSSDL-GTEWRGHNLPVGWERTQETAIYEIRPDGTGF 222
Query: 659 KRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKV 717
+++ + + DG+P+W +Q F ETP + WGA PE +
Sbjct: 223 RQIAARAGYADGSPSW-----------SNDGKQIVFY------ETPVESTWGAH-RPEAI 264
>gi|89053466|ref|YP_508917.1| translocation protein TolB [Jannaschia sp. CCS1]
gi|119371046|sp|Q28TS0.1|TOLB_JANSC RecName: Full=Protein TolB; Flags: Precursor
gi|88863015|gb|ABD53892.1| Twin-arginine translocation pathway signal [Jannaschia sp. CCS1]
Length = 445
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 40/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNA----FSTVWDPVREAVVYTS 475
P FSP+GDRI + FP VY+++ RR + A FS + P ++VV++
Sbjct: 215 PRFSPQGDRILYTSYESGFPQVYIMDVATVQRRPLEAIPAETMTFSPRFSPSGQSVVFS- 273
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ S DI S+++ R+LT PS SPDG IVF S R+G +
Sbjct: 274 -----LVDGSNTDIYSLDL----ATGTRRQLTQAPSIETAPSFSPDGSQIVFESDRSGNQ 324
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+YIM A+GGE R++ G WSP G++IAF + G F + ++ +G
Sbjct: 325 QIYIMPADGGEA---RRVSAGTGRYGTPVWSPRGDYIAFTKQEN----GRFHIGVMRTDG 377
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ R L S+ P ++P+G+ I+FT + G P ++ + + G
Sbjct: 378 SDERLLT---SSFLDEGPTWAPNGRVIMFTRETPGDDGAP-----------AVYSVDISG 423
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+L+R+ PAW P
Sbjct: 424 RNLQRVATPGMAS-DPAWSP 442
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G I++ S +G+ +YIMD +
Sbjct: 192 LAIMDYDGAN-VQFLTDSRSIVLAPRFSPQGDRILYTSYESGFPQVYIMDVATVQ----R 246
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFA-SDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGS 606
R E ++TM +SP G+ + F+ D N S ++ TG R+ L Q+ S
Sbjct: 247 RPLEAIPAETMTFSPRFSPSGQSVVFSLVDGSNTDIYSLDL------ATGTRRQLTQAPS 300
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
A P FSPDG IVF SD G +I+ + DG + +R++ +
Sbjct: 301 IETA--PSFSPDGSQIVFESDRSGNQ--------------QIYIMPADGGEARRVSAGTG 344
Query: 667 EDGTPAWGPR 676
GTP W PR
Sbjct: 345 RYGTPVWSPR 354
>gi|300023930|ref|YP_003756541.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525751|gb|ADJ24220.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium
denitrificans ATCC 51888]
Length = 445
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P V+++N + R V + F+ + P + VV + G
Sbjct: 216 PRFSPTNQEITYMSYTSDQPKVFIMNLESGRRELVGDFPGMTFAPRFSPDGQRVVMSLGT 275
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ S E+D+ + RRLT + + PS SPDG+ IVF S R G + L
Sbjct: 276 PDGRSSIYEMDLRT---------RQPRRLTESSGIDTSPSYSPDGRQIVFESDRDGTQKL 326
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G H ++ G S + WSP G++IAF G F + ++ P+G+G
Sbjct: 327 YVMNADGS---GAHPISLGGGSYSTPVWSPRGDYIAFTQQ----AGGRFLIGVMKPDGSG 379
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F D S P +I+ + + G
Sbjct: 380 ERVLTE----GFHNEGPTWAPNGRVLMFWRDSQSTSGGP-----------KIYSVDITGF 424
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++T SF PAW P
Sbjct: 425 NERQVTTPSFAS-DPAWSP 442
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 88/227 (38%), Gaps = 66/227 (29%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGG----- 545
+ + D DG + RL T GK P SP + I + S + ++IM+ E G
Sbjct: 193 LAIMDQDGANV--RLLTQGKELVLTPRFSPTNQEITYMSYTSDQPKVFIMNLESGRRELV 250
Query: 546 --------------EGYGL-----------------------HRLTEGPWSDTMCNWSPD 568
+G + RLTE DT ++SPD
Sbjct: 251 GDFPGMTFAPRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQPRRLTESSGIDTSPSYSPD 310
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G I F SDRD G+ ++Y+++ +G+G + G G + P +SP G I FT
Sbjct: 311 GRQIVFESDRD----GTQKLYVMNADGSGAHPISLGG--GSYSTPVWSPRGDYIAFTQQA 364
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GG I +K DGS + LT+ F + P W P
Sbjct: 365 GGRFL--------------IGVMKPDGSGERVLTEG-FHNEGPTWAP 396
>gi|399991802|ref|YP_006572042.1| protein TolB [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398656357|gb|AFO90323.1| putative protein TolB [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 437
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P VVY+
Sbjct: 208 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYSQ- 266
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI ++N+D A RLT+ PS SPDG IVF S R+G
Sbjct: 267 -----SQGGNTDIFTMNID----TGARTRLTSAPSIETAPSFSPDGSQIVFESDRSGAPQ 317
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 318 LYVMAATGGEA---RRISFGAGRYGTPVWSPRGDMIAFTKQN----KGRFHIGVMRTDGS 370
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S + ++ + + G
Sbjct: 371 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGRAL-----------LYSVDVSGR 416
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D PAW P
Sbjct: 417 NLKPVRTPDGASD--PAWSP 434
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---------- 541
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D
Sbjct: 185 LAIMDYDGAN-VQYLTNSASIVLAPRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLS 243
Query: 542 -----------------------AEGG---------EGYGLHRLTEGPWSDTMCNWSPDG 569
++GG + RLT P +T ++SPDG
Sbjct: 244 ADNGIMSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGARTRLTSAPSIETAPSFSPDG 303
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ G R++ S AGR P +SP G I FT
Sbjct: 304 SQIVFESDR----SGAPQLYVMAATGGEARRI--SFGAGRYGTPVWSPRGDMIAFT---- 353
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++ DGS+ +RL SF D P W P
Sbjct: 354 ----------KQNKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWSP 388
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 39/186 (20%)
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-------SPLPDISLFRFDGSFPSFS 427
P +PD V Y + +G GN + NI + P I + PSFS
Sbjct: 253 PRFAPDGRTVVYSQSQG------GNTDIFTMNIDTGARTRLTSAPSIE------TAPSFS 300
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFA 481
P G +I F P +YV+ + G R++ F + VW P + + +T
Sbjct: 301 PDGSQIVFESDRSGAPQLYVMAATGGEARRISFGAGRYGTPVWSPRGDMIAFT------- 353
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR--TGYKNLY 538
I V DG + RL T + P+ SP+G+ I+F R T+ +G LY
Sbjct: 354 --KQNKGRFHIGVMRTDG--SEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRALLY 409
Query: 539 IMDAEG 544
+D G
Sbjct: 410 SVDVSG 415
>gi|159897506|ref|YP_001543753.1| WD40 domain-containing protein [Herpetosiphon aurantiacus DSM 785]
gi|159890545|gb|ABX03625.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus DSM
785]
Length = 316
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGG 477
P+ R+AFV G +++ +N Q+ F A W P G
Sbjct: 42 PTVGEAPQRLAFVANQINRGTIMISGLDANPPQLLNPDFPLAIDPTWSP---------DG 92
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
E A + D ++ + DG S + ++T ++ PS SPDG+ + F+S R+G L
Sbjct: 93 NELAFVVQDSDGFNMYISSADG-SNLFQVTNQPGDDQSPSWSPDGQQLAFQSNRSGNDEL 151
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR--DNPGSGSFEMYLIHPNG 595
Y+++ +G L +LT P D +WSPDG IAF SDR P + ++Y+I P+G
Sbjct: 152 YLINRDGSN---LRQLTNDPARDWQPSWSPDGSLIAFTSDRGAQTPDGWNDQLYVIQPDG 208
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL+ L + GRA HP +SPD + +V+ G + + I+ + DG
Sbjct: 209 QGLKYLTE--GFGRARHPAWSPDSQQLVYVVGGGDVGSN------------SIYTVNRDG 254
Query: 656 SDLKRLTQNSFEDGTPAW 673
SD L N+F+ P W
Sbjct: 255 SDPTLLYANAFD---PQW 269
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P+ SPDG + F + N+YI A+G L ++T P D +WSPDG+ +AF
Sbjct: 86 PTWSPDGNELAFVVQDSDGFNMYISSADGSN---LFQVTNQPGDDQSPSWSPDGQQLAFQ 142
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
S+R SG+ E+YLI+ +G+ LR+L + R P +SPDG I FTSD G
Sbjct: 143 SNR----SGNDELYLINRDGSNLRQL--TNDPARDWQPSWSPDGSLIAFTSDRGA----- 191
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
TP + +++ I+ DG LK LT+ PAW P
Sbjct: 192 -QTPDGWN--DQLYVIQPDGQGLKYLTEGFGRARHPAWSP 228
>gi|406934142|gb|EKD68537.1| Periplasmic component of the Tol biopolymer transport system,
partial [uncultured bacterium]
Length = 653
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 29/191 (15%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ I V D G S V LT N + SPDG IVF S R G +YIM+++G G
Sbjct: 490 LEIYVFDKTGGSLVN-LTNNPAADVTSKFSPDGSKIVFVSDRDGNNEIYIMNSDGS---G 545
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
L LT +DT N+SPDG+ I F+SDRD PG ++Y ++ +GTGL ++ G
Sbjct: 546 LANLTNNAKNDTDPNFSPDGKKIVFSSDRDGPG----QIYTMNADGTGLARITSGGL--N 599
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P +SPDG+ IVF++ +S G +F + DG+D K + +N+
Sbjct: 600 CFEPCYSPDGRKIVFSAYTSSLSD------------GGVFTVNPDGTDPKVILRNT---- 643
Query: 670 TPAWGPRFIRP 680
RFI P
Sbjct: 644 ---TALRFISP 651
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 32/241 (13%)
Query: 426 FSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
++ D + VE +Y NS+GS QV F + + + + + G + A
Sbjct: 102 YNTASDSNSLVE-SNIYSANSNGSGLTQVTFNDTTALIKAAI------SPDGTKIAYSGI 154
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I + V D+ RRLT+N ++ P + D I+F S R G LY M+A+G
Sbjct: 155 RDGNIELFVMDLKTYKK-RRLTSNSSSDDEPCFTADSSKIIFTSNREGNFELYSMNADGS 213
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
RLT + ++ + DG + + S+R+ G LI P L S
Sbjct: 214 S---QTRLTNNAYDESSPYVAKDGLMLLYTSNRN--GYDKVYASLIDPMSGALSDE-TSV 267
Query: 606 SAGRAN--HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD-GSDLKRLT 662
+ G N +P F G + F SD G+S ++F ++L GS+ K LT
Sbjct: 268 TVGEGNDRNPCF-ISGNRVAFESDRNGLS--------------QLFAVELSAGSEPKALT 312
Query: 663 Q 663
Sbjct: 313 S 313
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 553 LTEGPWSDTMC----NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
LT+ ++DT SPDG IA++ RD G+ E++++ R+L + S+
Sbjct: 126 LTQVTFNDTTALIKAAISPDGTKIAYSGIRD----GNIELFVMDLKTYKKRRLTSNSSSD 181
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
+ P F+ D I+FTS+ G E++ + DGS RLT N++++
Sbjct: 182 --DEPCFTADSSKIIFTSNREG--------------NFELYSMNADGSSQTRLTNNAYDE 225
Query: 669 GTP 671
+P
Sbjct: 226 SSP 228
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 72/188 (38%), Gaps = 37/188 (19%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRS-------------TRTGYKNLYIMDAEGGEG 547
S VR L N+ PSVSPDG I + S + ++Y + A GGE
Sbjct: 400 SLVRAL----NKNSAPSVSPDGTEIFYHSDIDNIGFFDIGQISSISMYDIYSVPAAGGER 455
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ + D ++P A + + E+Y+ G L L + +A
Sbjct: 456 VKITSAS----GDITGYYNPSYSSAAAKITATAKVNENLEIYVFDKTGGSLVNLTNNPAA 511
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+ FSPDG IVF SD G EI+ + DGS L LT N+
Sbjct: 512 DVTSK--FSPDGSKIVFVSDRDG--------------NNEIYIMNSDGSGLANLTNNAKN 555
Query: 668 DGTPAWGP 675
D P + P
Sbjct: 556 DTDPNFSP 563
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
I +FD + LT +P + F SPD S++ + R DGNN++ + N
Sbjct: 491 EIYVFDKTGGSLVNLTN--NPAADVTSKF-SPDGSKIVFVSDR------DGNNEIYIMNS 541
Query: 408 K-SPLPDISLFRFDGSFPSFSPKGDRIAFV---EFPG-VYVVNSDGSNRRQVYFK--NAF 460
S L +++ + + P+FSP G +I F + PG +Y +N+DG+ ++ N F
Sbjct: 542 DGSGLANLTNNAKNDTDPNFSPDGKKIVFSSDRDGPGQIYTMNADGTGLARITSGGLNCF 601
Query: 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
+ P +V+++ + S S+ + ++N D D +R T
Sbjct: 602 EPCYSPDGRKIVFSA----YTSSLSDGGVFTVNPDGTDPKVILRNTT 644
>gi|49234794|gb|AAT57936.1| putative protein [Gossypium hirsutum]
Length = 99
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 232 VASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDW 291
+ASYG++ W+G+ L TDI +F T D R+ + + GGWP W +ST+FFHR++ +D W
Sbjct: 3 LASYGSRPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTIFFHRQT-DDGW 61
Query: 292 ISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAFTPA 326
S+++V P+ L +E V R+TPPGLH F+PA
Sbjct: 62 WSIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPA 97
>gi|400753444|ref|YP_006561812.1| protein TolB [Phaeobacter gallaeciensis 2.10]
gi|398652597|gb|AFO86567.1| putative protein TolB [Phaeobacter gallaeciensis 2.10]
Length = 446
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P VVY+
Sbjct: 217 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYSQ- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI ++N+D A RLT+ PS SPDG IVF S R+G
Sbjct: 276 -----SQGGNTDIFTMNID----TGARTRLTSAPSIETAPSFSPDGSQIVFESDRSGAPQ 326
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 327 LYVMAATGGEA---RRISFGAGRYGTPVWSPRGDMVAFTKQN----KGRFHIGVMRTDGS 379
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S + ++ + + G
Sbjct: 380 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGRAL-----------LYSVDVSGR 425
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D PAW P
Sbjct: 426 NLKPVRTPDGASD--PAWSP 443
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---------- 541
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D
Sbjct: 194 LAIMDYDGAN-VQYLTNSASIVLAPRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLS 252
Query: 542 -----------------------AEGG---------EGYGLHRLTEGPWSDTMCNWSPDG 569
++GG + RLT P +T ++SPDG
Sbjct: 253 ADNGIMSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGARTRLTSAPSIETAPSFSPDG 312
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ G R++ S AGR P +SP G + FT
Sbjct: 313 SQIVFESDR----SGAPQLYVMAATGGEARRI--SFGAGRYGTPVWSPRGDMVAFT---- 362
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++ DGS+ +RL SF D P W P
Sbjct: 363 ----------KQNKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWSP 397
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-------SPLPDISLFRFDGSFPSFS 427
P +PD V Y + +G GN + NI + P I + PSFS
Sbjct: 262 PRFAPDGRTVVYSQSQG------GNTDIFTMNIDTGARTRLTSAPSIE------TAPSFS 309
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVVYTSGGPEFA 481
P G +I F P +YV+ + G R++ F + T VW P + V +T
Sbjct: 310 PDGSQIVFESDRSGAPQLYVMAATGGEARRISFGAGRYGTPVWSPRGDMVAFT------- 362
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR--TGYKNLY 538
I V DG + RL T + P+ SP+G+ I+F R T+ +G LY
Sbjct: 363 --KQNKGRFHIGVMRTDG--SEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRALLY 418
Query: 539 IMDAEG 544
+D G
Sbjct: 419 SVDVSG 424
>gi|442317383|ref|YP_007357404.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus stipitatus DSM 14675]
gi|441485025|gb|AGC41720.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus stipitatus DSM 14675]
Length = 343
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + P++SPDG+ + F +R G +Y+ A +G RLT D
Sbjct: 147 RLTQVKEGCFEPAISPDGQEVAFVCSREGDPEIYVAKA---DGTNERRLTAFHREDRAPV 203
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG+WI F SDR+N +YLI P+G+ LR + +G P FSPDGK +V+
Sbjct: 204 WSPDGKWIVFVSDREN----RERLYLIRPDGSDLRAVSGESFSGDEREPAFSPDGKHLVY 259
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+S EP + ++++ ++G LT+ D PAW P
Sbjct: 260 ------VSREP-------EARARLWRVPVEGGVPVALTEGQRRDDMPAWSP 297
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 34/285 (11%)
Query: 327 TSPGNNKFIAVATRRPTS-SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385
SP + VA R ++ + + L + L +P+ N +PD S +
Sbjct: 67 VSPDGKSLLVVAVREVDGLQFQQLRVQPLAGGDAVPLH---APRARARNAVWAPDGSWLS 123
Query: 386 YHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF-DGSF-PSFSPKGDRIAFV----EFP 439
+ G + ++ ++ +P++ L + +G F P+ SP G +AFV P
Sbjct: 124 AE------SDAQGFSDVVRLEPRADVPEVRLTQVKEGCFEPAISPDGQEVAFVCSREGDP 177
Query: 440 GVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+YV +DG+N R++ + + + VW P + +V+ S + +I + D+
Sbjct: 178 EIYVAKADGTNERRLTAFHREDRAPVWSPDGKWIVFVSD----RENRERLYLIRPDGSDL 233
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-TGYKNLYIMDAEGGEGYGLHRLTEG 556
VS + + P+ SPDGK +V+ S L+ + EGG LTEG
Sbjct: 234 RAVSG----ESFSGDEREPAFSPDGKHLVYVSREPEARARLWRVPVEGGVPVA---LTEG 286
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
D M WSPDG+++AF S+R+ G+ ++YL+ +G+G +L
Sbjct: 287 QRRDDMPAWSPDGKYLAFVSERE----GNTDVYLMRADGSGQTRL 327
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 508 TNGKNNAFPS-VSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
T G + +P VSPDGK ++ + R ++ L + GG+ LH P +
Sbjct: 56 TRGPEDDYPGPVSPDGKSLLVVAVREVDGLQFQQLRVQPLAGGDAVPLH----APRARAR 111
Query: 563 -CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W+PDG W++ SD G ++ + P + G P SPDG+
Sbjct: 112 NAVWAPDGSWLSAESD----AQGFSDVVRLEPRADVPEVRLTQVKEG-CFEPAISPDGQE 166
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ F G +P EI+ K DG++ +RLT ED P W P
Sbjct: 167 VAFVCSREG---DP-----------EIYVAKADGTNERRLTAFHREDRAPVWSP 206
>gi|269925257|ref|YP_003321880.1| hypothetical protein Tter_0136 [Thermobaculum terrenum ATCC
BAA-798]
gi|269788917|gb|ACZ41058.1| WD40 domain protein beta Propeller [Thermobaculum terrenum ATCC
BAA-798]
Length = 419
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 47/289 (16%)
Query: 393 STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDG 448
S R DG + L S FDG PS++P G++IAFV ++++NSDG
Sbjct: 172 SIRADGTGLVRLTGESS---------FDG-MPSWAPTGEQIAFVSDRTGSLQIWIMNSDG 221
Query: 449 SNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
SN Q+ + + W P + + YT G + I I + L
Sbjct: 222 SNPYQLTYGKIIAQDPDWSPDGKYIAYTLG--------RDTGIAKIPAKGGKPIV----L 269
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T + P+ SPDG I F Y +++M+A+G GL ++T P W
Sbjct: 270 TDLSYPQSAPAWSPDGSKITFMGKPGKYWQVFVMNADGS---GLRQITHDPTDHRFPRWM 326
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG+ I + + + G ++++++ +GT ++++ S + G P+ SPDG+ IVF S
Sbjct: 327 PDGKRIVYNTRKSEHVIG--QIFIMNADGTNVKQITMS-TEGENGRPFPSPDGRYIVFNS 383
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + EI+ ++ DGS++KRLT +D P W P
Sbjct: 384 N-------------RLDNNWEIYIMRPDGSEVKRLTNTIGDDFEPCWSP 419
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
DI SI D + + RLT + PS +P G+ I F S RTG ++IM+++G
Sbjct: 169 DIYSIRADG----TGLVRLTGESSFDGMPSWAPTGEQIAFVSDRTGSLQIWIMNSDGSNP 224
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
Y +LT G +WSPDG++IA+ RD + G + ++ + +
Sbjct: 225 Y---QLTYGKIIAQDPDWSPDGKYIAYTLGRDT--------GIAKIPAKGGKPIVLTDLS 273
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+ P +SPDG I F G Y ++F + DGS L+++T + +
Sbjct: 274 YPQSAPAWSPDGSKITFMGKPGK--------------YWQVFVMNADGSGLRQITHDPTD 319
Query: 668 DGTPAWGP 675
P W P
Sbjct: 320 HRFPRWMP 327
>gi|221196873|ref|ZP_03569920.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M]
gi|221203543|ref|ZP_03576562.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2]
gi|221177477|gb|EEE09905.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2]
gi|221183427|gb|EEE15827.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M]
Length = 640
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 121/283 (42%), Gaps = 32/283 (11%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVY---------------FKN 458
+RF FP S G + + E + V ++D S+ R +Y
Sbjct: 368 YRFVDVFPQLSRDGKSLVYTEKAVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGLAG 427
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPS 517
AF W P ++ V + G F I I D ++ + T+GK NA FPS
Sbjct: 428 AFQPTWSPDKQWVAFGVGSWFFTRAHMPGRIARIRADG--SMNGKPEILTDGKENAGFPS 485
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
SPDG IV+R K L I+D + LT P D + WSPDG I F
Sbjct: 486 YSPDGTRIVYRVWSETDKGLRILDLNTRK---TMVLTTEP--DNLPGWSPDGTRIVFTRK 540
Query: 578 RDNPGSGS---FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
NP + F++Y I P+GT +R+L G+ H ++ DG+ I ++S G E
Sbjct: 541 EVNPNDANKFHFDVYTIKPDGTDVRRLTPPGA--NQAHATWTWDGR-IAYSSGEYGFRDE 597
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
+QP G+ + + DGSD +T +ED P + P+
Sbjct: 598 LSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIPKL 640
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 39/240 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYG 549
+ + + DG S RL +G + S SPDGKW+VF S R G+ +LY + +G G
Sbjct: 50 LYIANADG-SDEHRLIASGGFDYHGSFSPDGKWVVFTSERDGLGHASLYRVRI---DGTG 105
Query: 550 LHRLTEGPW---SDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKL---- 601
L RLT+ W SD D + IAF S RDN G+ ++ ++ L +
Sbjct: 106 LQRLTD--WTGVSDAAVYDPADPDVIAFVSSRRDNDTWGTTNIWTLNLKTGALHNVTGDI 163
Query: 602 -IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE--IFKIKLDGSDL 658
P +SPDGK I F+SD G + P ++ E I++I+ DG+
Sbjct: 164 RFDPDKPHSFFRPSWSPDGKWIAFSSDL-GTEWRGHNLPVGWERTQETAIYEIRPDGTGF 222
Query: 659 KRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKV 717
+++ + + DG+P+W +Q F ETP + WGA PE +
Sbjct: 223 RQIAARAGYADGSPSW-----------SNDGKQIVFY------ETPVESTWGAH-RPEAI 264
>gi|49234792|gb|AAT57935.1| putative protein [Gossypium hirsutum]
Length = 99
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 232 VASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDW 291
+ASYG+ W+G+ L TDI +F T D R+ + + GGWP W +ST+FFHR++ +D W
Sbjct: 3 LASYGSSPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTIFFHRQT-DDGW 61
Query: 292 ISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAFTPA 326
S+++V P+ L +E V R+TPPGLH F+PA
Sbjct: 62 WSIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPA 97
>gi|372280292|ref|ZP_09516328.1| translocation protein TolB [Oceanicola sp. S124]
Length = 445
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P +YV++ RR + + AFS + P V+Y+
Sbjct: 217 PRFSPTGDRVLYTSYETGRPQIYVLDVASVGRRVLDTGSGDMAFSPRFAPDGRTVIYS-- 274
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ S DI +++ V RLT PS SPDG IVF S R+G +
Sbjct: 275 ----LTQGSNTDIYRMDLATGQSV----RLTDAASIETAPSFSPDGSRIVFESDRSGTQQ 326
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 327 LYIMPATGGEA---QRISFGEGRYGTPVWSPRGDLVAFTKQ----SKGRFHIGVMRTDGS 379
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L S P +SP+G+ I+F + G Q ++ + + G
Sbjct: 380 GERLLTAS---FLDEGPSWSPNGRVIMFARETQG-----------EQGASSLYTVDITGR 425
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LKR+ T + D PAWGP
Sbjct: 426 NLKRVDTPSGASD--PAWGP 443
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG +A + LT + P SP G +++ S TG +Y++D G
Sbjct: 194 LAIMDYDGANA-QFLTDSSSIVLAPRFSPTGDRVLYTSYETGRPQIYVLDVAS---VGRR 249
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
L G S M ++PDG + ++ + GS + + G +R + +A
Sbjct: 250 VLDTG--SGDMAFSPRFAPDGRTVIYSLTQ---GSNTDIYRMDLATGQSVRL---TDAAS 301
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P FSPDG IVF SD G +++ + G + +R++
Sbjct: 302 IETAPSFSPDGSRIVFESDRSGTQ--------------QLYIMPATGGEAQRISFGEGRY 347
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 348 GTPVWSPR 355
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 87/215 (40%), Gaps = 25/215 (11%)
Query: 295 YKVILPQTGLVSTESVSIQRV--TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352
Y+ PQ ++ SV +RV T G AF+P +P I T+ S I
Sbjct: 231 YETGRPQIYVLDVASVG-RRVLDTGSGDMAFSPRFAPDGRTVIYSLTQ---GSNTDIYRM 286
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP 412
DL + + LT S +T P SPD SR+ + R G+ ++
Sbjct: 287 DLATGQSVRLTDAASIETA---PSFSPDGSRIVFESDRSGT-----QQLYIMPATGGEAQ 338
Query: 413 DISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV---YFKNAFSTVWD 465
IS P +SP+GD +AF + + V+ +DGS R + + S W
Sbjct: 339 RISFGEGRYGTPVWSPRGDLVAFTKQSKGRFHIGVMRTDGSGERLLTASFLDEGPS--WS 396
Query: 466 PVREAVVYT--SGGPEFASESSEVDIISINVDDVD 498
P +++ + G + AS VDI N+ VD
Sbjct: 397 PNGRVIMFARETQGEQGASSLYTVDITGRNLKRVD 431
>gi|294505693|ref|YP_003569754.1| TolB protein [Salinibacter ruber M8]
gi|294342132|emb|CBH22796.1| TolB protein precursor [Salinibacter ruber M8]
Length = 543
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 143/328 (43%), Gaps = 80/328 (24%)
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGG--------STREDGNNQLLLENIKSPLPDIS 415
R V+ ++P SPD SR+ + GG + R DG++ L + P D+
Sbjct: 278 RQVTNSATGISPTWSPDGSRIAFTADGGGDDANDPIATIRPDGSD---LSPVTDPA-DVE 333
Query: 416 LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475
R P +SP GDRIAF P
Sbjct: 334 DGRIADVAPEWSPSGDRIAFSRDPDTT--------------------------------- 360
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
A +++E I +++ D D +R++ + P+ SPDG I F ST
Sbjct: 361 -----ARDTTEPRIYTVDPDGSD----LRQVAEDKAIGFNPTWSPDGSRIAF-STPADPS 410
Query: 536 NLYIMDAEGGEGYGLHRLTE-----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
++ + +G + L ++T+ G D WSPDG IAF SDRD G SF++Y
Sbjct: 411 VIFTIRPDGSD---LRQVTDRSDIDGNSGDLAPAWSPDGSRIAFQSDRD--GGSSFDIYT 465
Query: 591 IHPNGTGLRKLIQSGS-AGRANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
+ P+G+ L+++ +G R + P +SPDG IVF S+ G SA P +
Sbjct: 466 VDPDGSDLKQVTTAGDRDDRVDDISPAWSPDGSRIVFGSNRDG-SAVP-----------D 513
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+ I+ DGS+L+R+T N D PAW P
Sbjct: 514 IYTIRPDGSELERITNNDRLDFGPAWSP 541
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 25/115 (21%)
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
IAF+S+ G E+Y + P+G+ LR++ S + P +SPDG I FT+D GG
Sbjct: 254 IAFSSEDTG---GDAEIYTVRPDGSNLRQVTNSAT---GISPTWSPDGSRIAFTADGGGD 307
Query: 632 SA-EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS-FEDG-----TPAWGPRFIR 679
A +PI+T I+ DGSDL +T + EDG P W P R
Sbjct: 308 DANDPIAT------------IRPDGSDLSPVTDPADVEDGRIADVAPEWSPSGDR 350
>gi|404494654|ref|YP_006718760.1| biopolymer transport TolB-like protein [Pelobacter carbinolicus DSM
2380]
gi|404398084|gb|ABA90210.2| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Pelobacter carbinolicus DSM 2380]
Length = 430
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 50/304 (16%)
Query: 379 PDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
P SSR+ Y R G DG N L L + +S + + P FSP G +
Sbjct: 164 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLN----------PDFSPNGREV 213
Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
+ + P +Y ++ FK + A + G E A S
Sbjct: 214 IYTSYRRGNPDLYRKQLSTGQEARLAFKKGLNI-------AARFRPDGREIALTQSATGN 266
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + DG S RRLT++ + PS SP G + F S R G ++++MD GG+
Sbjct: 267 PELMLLGTDG-SRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQ--- 322
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RLT + WSPDG+ IAF G F++Y + P+GT R+L + G
Sbjct: 323 TARLTANGKYNATPAWSPDGKRIAFT----RLEKGVFDIYTVRPDGTDERRL--TFGPGN 376
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
HP +SPD + +V++SD G I+ ++ DG+ ++R++ +
Sbjct: 377 KEHPRWSPDSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQ 422
Query: 670 TPAW 673
PAW
Sbjct: 423 HPAW 426
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
H EL+ L+ R ++ LNP SP+ V Y R GN L + +
Sbjct: 178 HKELY-LMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYR------RGNPDLYRKQL 230
Query: 408 KSPLPDISLFRFDGSFPS-FSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAF 460
+ F+ + + F P G IA + P + ++ +DGS RR++ ++
Sbjct: 231 STGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDV 290
Query: 461 STVWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517
W P + + + S G P +D + G +A RLT NGK NA P+
Sbjct: 291 DPSWSPAGDRLAFVSDRQGNPHI-----------FVMDLLGGQTA--RLTANGKYNATPA 337
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
SPDGK I F G ++Y + +G + RLT GP + WSPD ++ ++SD
Sbjct: 338 WSPDGKRIAFTRLEKGVFDIYTVRPDGTDE---RRLTFGPGNKEHPRWSPDSRFLVYSSD 394
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
+D G +Y++ +GTG+R++ S G+ HP +S
Sbjct: 395 QD----GRKGIYIMRADGTGIRRI--SAGGGQCQHPAWS 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSN------RRQVYFKNAFSTVWDPVREAVVYTS-- 475
P RIA+++ +Y++++DG+N R + FS P V+YTS
Sbjct: 164 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLNPDFS----PNGREVIYTSYR 219
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G P+ + G A RL N PDG+ I + TG
Sbjct: 220 RGNPDLYRKQLST-----------GQEA--RLAFKKGLNIAARFRPDGREIALTQSATGN 266
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
L ++ G +G RLT D +WSP G+ +AF SDR G+ ++++
Sbjct: 267 PELMLL---GTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDR----QGNPHIFVMDLL 319
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G +L +G P +SPDGK I FT G+ +I+ ++ D
Sbjct: 320 GGQTARLTANGKYNAT--PAWSPDGKRIAFTRLEKGVF--------------DIYTVRPD 363
Query: 655 GSDLKRLTQNSFEDGTPAWGP--RFI 678
G+D +RLT P W P RF+
Sbjct: 364 GTDERRLTFGPGNKEHPRWSPDSRFL 389
>gi|119371048|sp|Q3A097.1|TOLB_PELCD RecName: Full=Protein TolB; Flags: Precursor
Length = 443
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 50/304 (16%)
Query: 379 PDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
P SSR+ Y R G DG N L L + +S + + P FSP G +
Sbjct: 177 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLN----------PDFSPNGREV 226
Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
+ + P +Y ++ FK + A + G E A S
Sbjct: 227 IYTSYRRGNPDLYRKQLSTGQEARLAFKKGLNI-------AARFRPDGREIALTQSATGN 279
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + DG S RRLT++ + PS SP G + F S R G ++++MD GG+
Sbjct: 280 PELMLLGTDG-SRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQ--- 335
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RLT + WSPDG+ IAF G F++Y + P+GT R+L + G
Sbjct: 336 TARLTANGKYNATPAWSPDGKRIAFT----RLEKGVFDIYTVRPDGTDERRL--TFGPGN 389
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
HP +SPD + +V++SD G I+ ++ DG+ ++R++ +
Sbjct: 390 KEHPRWSPDSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQ 435
Query: 670 TPAW 673
PAW
Sbjct: 436 HPAW 439
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
H EL+ L+ R ++ LNP SP+ V Y R GN L + +
Sbjct: 191 HKELY-LMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYR------RGNPDLYRKQL 243
Query: 408 KSPLPDISLFRFDGSFPS-FSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAF 460
+ F+ + + F P G IA + P + ++ +DGS RR++ ++
Sbjct: 244 STGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDV 303
Query: 461 STVWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517
W P + + + S G P +D + G +A RLT NGK NA P+
Sbjct: 304 DPSWSPAGDRLAFVSDRQGNPHI-----------FVMDLLGGQTA--RLTANGKYNATPA 350
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
SPDGK I F G ++Y + +G + RLT GP + WSPD ++ ++SD
Sbjct: 351 WSPDGKRIAFTRLEKGVFDIYTVRPDGTDE---RRLTFGPGNKEHPRWSPDSRFLVYSSD 407
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
+D G +Y++ +GTG+R++ S G+ HP +S
Sbjct: 408 QD----GRKGIYIMRADGTGIRRI--SAGGGQCQHPAWS 440
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSN------RRQVYFKNAFSTVWDPVREAVVYTS-- 475
P RIA+++ +Y++++DG+N R + FS P V+YTS
Sbjct: 177 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLNPDFS----PNGREVIYTSYR 232
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G P+ + G A RL N PDG+ I + TG
Sbjct: 233 RGNPDLYRKQLST-----------GQEA--RLAFKKGLNIAARFRPDGREIALTQSATGN 279
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
L ++ G +G RLT D +WSP G+ +AF SDR G+ ++++
Sbjct: 280 PELMLL---GTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDR----QGNPHIFVMDLL 332
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G +L +G P +SPDGK I FT G+ +I+ ++ D
Sbjct: 333 GGQTARLTANGKYNAT--PAWSPDGKRIAFTRLEKGVF--------------DIYTVRPD 376
Query: 655 GSDLKRLTQNSFEDGTPAWGP--RFI 678
G+D +RLT P W P RF+
Sbjct: 377 GTDERRLTFGPGNKEHPRWSPDSRFL 402
>gi|158339964|ref|YP_001521134.1| WD-40-like beta propeller repeat-containing protein [Acaryochloris
marina MBIC11017]
gi|158310205|gb|ABW31820.1| WD40-like Beta Propeller, putative [Acaryochloris marina MBIC11017]
Length = 344
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSN--RRQVYFKNAFSTVWDPVREAVVYTSGG 477
P +SP G R+AF+ +Y++N DGS R + W P + + + S
Sbjct: 69 PVWSPDGTRLAFISDRNGQSDLYLINLDGSQLTRLTSHAARDEDPAWSPDSQHITFVSKR 128
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+I +N+ D S ++RLT + ++ PS SPDG+ IVF +L
Sbjct: 129 DANQQHPYNTEIYLLNIKD----SEIKRLTEHVGEDSSPSWSPDGQQIVFSRKIQDNADL 184
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
++M EG E +LT+ P D +WSPDG+ I F S R N + ++Y+I+ +G+
Sbjct: 185 FLMTPEGTE---FKQLTDDPNDDWNADWSPDGQQIVFTSGRSN----NVDLYVINADGSN 237
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTS------------------------DYGGISA 633
L++L Q N +SP G I + S D ++
Sbjct: 238 LKRLTQDPED--ENQGRWSPSGHRIAYISLSQNQWDLYTILPNGTGRTRVTNDDALELAF 295
Query: 634 E--PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ P S ++ I++ + GS +++T N +DG+P W P
Sbjct: 296 DWLPNSNKILFESKDGIYQANVIGSKKQQMTDNP-KDGSPTWKP 338
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 43/244 (17%)
Query: 441 VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
++++ +DGSNR+++ + +S VW P + + S + + D+ IN+D
Sbjct: 46 IFLMTADGSNRKRLTTHPGEDWSPVWSPDGTRLAFIS------DRNGQSDLYLINLDG-- 97
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN------LYIMDAEGGEGYGLHR 552
S + RLT++ + P+ SPD + I F S R + +Y+++ + E + R
Sbjct: 98 --SQLTRLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIKDSE---IKR 152
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
LTE D+ +WSPDG+ I F+ +DN +++L+ P GT ++L +
Sbjct: 153 LTEHVGEDSSPSWSPDGQQIVFSRKIQDNA-----DLFLMTPEGTEFKQLTDDPNDDW-- 205
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+ +SPDG+ IVFTS G S +++ I DGS+LKRLTQ+ ++
Sbjct: 206 NADWSPDGQQIVFTS---GRSNNV-----------DLYVINADGSNLKRLTQDPEDENQG 251
Query: 672 AWGP 675
W P
Sbjct: 252 RWSP 255
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 24/190 (12%)
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+++++M A+G RLT P D WSPDG +AF SDR +G ++YLI+ +
Sbjct: 44 RDIFLMTADGS---NRKRLTTHPGEDWSPVWSPDGTRLAFISDR----NGQSDLYLINLD 96
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ L +L + A R P +SPD + I F S P +T EI+ + +
Sbjct: 97 GSQLTRL--TSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNT--------EIYLLNIK 146
Query: 655 GSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAF------EDCHWLNETPNQRDW 708
S++KRLT++ ED +P+W P + V ++++ F + L + PN DW
Sbjct: 147 DSEIKRLTEHVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEFKQLTDDPND-DW 205
Query: 709 GAALEPEKVQ 718
A P+ Q
Sbjct: 206 NADWSPDGQQ 215
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 26/280 (9%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
L++ + + +R+T ++P SP + ++ R S I L +LT
Sbjct: 48 LMTADGSNRKRLTTHPGEDWSPVWSPDGTRLAFISDRNGQSDLYLINL------DGSQLT 101
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGS 422
R S +P SPDS + + R + + N ++ L NIK S + ++ + S
Sbjct: 102 RLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIKDSEIKRLTEHVGEDS 161
Query: 423 FPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSG 476
PS+SP G +I F + ++++ +G+ +Q+ + ++ W P + +V+TSG
Sbjct: 162 SPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEFKQLTDDPNDDWNADWSPDGQQIVFTSG 221
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ VD+ IN D S ++RLT + ++ SP G I + S +
Sbjct: 222 ------RSNNVDLYVINADG----SNLKRLTQDPEDENQGRWSPSGHRIAYISLSQNQWD 271
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
LY + G G R+T + +W P+ I F S
Sbjct: 272 LYTI---LPNGTGRTRVTNDDALELAFDWLPNSNKILFES 308
>gi|149202852|ref|ZP_01879823.1| translocation protein TolB precursor [Roseovarius sp. TM1035]
gi|149143398|gb|EDM31434.1| translocation protein TolB precursor [Roseovarius sp. TM1035]
Length = 441
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +YV++ RR++ ++A F+ + P VVY+
Sbjct: 212 PRFSPTGDRVLYTSYETGFPRIYVLDVANVGRRELPTQDATMSFAPRFAPNGRTVVYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ ++++ G A RLTT PS SPDG IVF S R+G
Sbjct: 270 ----LTQGGNTDLYTMDI----GSGASTRLTTAPSIETAPSYSPDGSQIVFESDRSGTPQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 322 LYIMSAGGGEA---RRISFGEGRYGTPVWSPRGDLVAFTKQ----SKGRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+FT + G Q ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWAPNGRVIMFTRETQG-----------EQGQASLYSVDITGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK++ N+ P+W P
Sbjct: 421 NLKQVPTNTGAS-DPSWSP 438
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 66/255 (25%)
Query: 480 FASESSEVDIIS--INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F +ES D + + + D DG + V+ LT + P SP G +++ S TG+ +
Sbjct: 175 FVAESGPKDQRAKRLGIMDYDGAN-VQYLTDSTSIVLAPRFSPTGDRVLYTSYETGFPRI 233
Query: 538 YIMDA---------------------------------EGGE--------GYGLH-RLTE 555
Y++D +GG G G RLT
Sbjct: 234 YVLDVANVGRRELPTQDATMSFAPRFAPNGRTVVYSLTQGGNTDLYTMDIGSGASTRLTT 293
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +T ++SPDG I F SDR SG+ ++Y++ G R++ S GR P +
Sbjct: 294 APSIETAPSYSPDGSQIVFESDR----SGTPQLYIMSAGGGEARRI--SFGEGRYGTPVW 347
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP G + FT Q + I ++ DGS+ +RL SF D P W P
Sbjct: 348 SPRGDLVAFT--------------KQSKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 392
Query: 676 RFIRPVDVEEVKNEQ 690
+ E + EQ
Sbjct: 393 NGRVIMFTRETQGEQ 407
>gi|268326068|emb|CBH39656.1| conserved hypothetical secreted protein, containing WD40-like beta
propeller repeats [uncultured archaeon]
gi|268326194|emb|CBH39782.1| conserved hypothetical secreted protein, containing WD40-like beta
propeller repeats [uncultured archaeon]
Length = 303
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 55/317 (17%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLL-----ENIKSPLPDISLFRFDGSFPSFS 427
L P ++ D + G ++ DGNN++ + N+ DI+ + P +
Sbjct: 22 LMPVMAADENVTGRIAF---TSNMDGNNEIYVMDADGTNVTRLTNDIA----NDINPEWH 74
Query: 428 PKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTS---GGP 478
PKG +IAF +Y+++ DG+N Q+ W P + ++S G P
Sbjct: 75 PKGCKIAFTSDRDGDLEIYLMDVDGTNITQLTNNTVADGCQCWSPNGSRIAFSSDRDGDP 134
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
E I V D +G + V RLT N + P SPDG I F S R G +Y
Sbjct: 135 E------------IYVMDAEGTN-VTRLTDNTCLDINPHWSPDGSKIAFSSGRVGDTEIY 181
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+MD G +LT+ D+ W+ D + F+SDRD G FE+YL+ +GT +
Sbjct: 182 VMDVNGANK---EQLTDNNKWDSPGEWASDSNKLLFSSDRD----GDFEVYLMDADGTKV 234
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L + + P ++ G+ IVF + +Y+ EI+ + DG+++
Sbjct: 235 TQLTNNAEY-QEGSPAWALGGEKIVFVA-------------GRYKGDFEIYMMDSDGTNI 280
Query: 659 KRLTQNSFEDGTPAWGP 675
++T N ++ P W P
Sbjct: 281 TQMTTNFADESDPVWAP 297
>gi|294633938|ref|ZP_06712495.1| tat pathway signal sequence domain-containing protein [Streptomyces
sp. e14]
gi|292830190|gb|EFF88542.1| tat pathway signal sequence domain-containing protein [Streptomyces
sp. e14]
Length = 646
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 205/490 (41%), Gaps = 79/490 (16%)
Query: 219 FSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKIVENGGW-- 271
F P+ SP G++ A +S N W G + ++ I++ R DGT ++ G+
Sbjct: 189 FRPSWSPDGQWIAFSSDRNTVWRGHGNGTGWEHTQELSIYVIRPDGTGFRQVASRDGYCQ 248
Query: 272 --PCWV-DESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
P W D S + F+ + ED W + + + ++ +VS + S R +H P
Sbjct: 249 GSPKWSPDGSRIVFYELTVEDTWGAHRPEDIGIAESQIVSVDVASGART----VHTSGPN 304
Query: 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP-----KTHHLNPFISPDS 381
+ VA + +S+ E+ LVK E +VS K +P +PD
Sbjct: 305 --------LKVAPQYVSST----EIGYLVKGGPDEGLAYVSGTLPSVKRSLRSPVWTPDG 352
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
V Y K D + L + S D +RF FP+ S G R+A
Sbjct: 353 RSVIYEK-------PDYTTRALDAPLYSWDADWD-YRFCDVFPALSKDG-RLAITNKQLG 403
Query: 439 -PGVYVVNSDGSNRRQVY---------------FKNAFSTVWDPVREAVVYTSGGPEFAS 482
+ + +DG++++ V+ AF W + + + GG
Sbjct: 404 NSSIVTMKADGTDQKVVFDTAASGLDPALVAKGLAGAFRPTWSHDAKWIAFGVGGWFQTR 463
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN-LYIMD 541
++ ++ + D S+ LT N FPS S DG IV+R G +N L ++D
Sbjct: 464 ATNTAVLVRVPSDG----SSYEVLTDGSTNAGFPSYSEDGNKIVYRVW--GQENGLRVLD 517
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
+ L SD + +WS DG+ I F + +F++ I P+GTGL+ L
Sbjct: 518 LKTRTTTVLTTE-----SDNLPDWSWDGKLILFTR---RTSATNFDVCTIKPDGTGLKVL 569
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
SG+ H ++ DG+ I++ S G E +QPYG+IF + DGSD + L
Sbjct: 570 TSSGA--NDAHAVWNYDGR-ILYNSGMYGFREEAALYDDTFQPYGQIFSMNADGSDKRML 626
Query: 662 TQNSFEDGTP 671
T + +ED P
Sbjct: 627 TDSQWEDSMP 636
>gi|310823648|ref|YP_003956006.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|309396720|gb|ADO74179.1| Protein TolB [Stigmatella aurantiaca DW4/3-1]
Length = 424
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 31/190 (16%)
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFD-GSFPSFSPKGDRIA 434
SPD R+ Y + +G ST Q+ + N+ S I+ + S PS+SP G R+A
Sbjct: 244 FSPDGKRIAYAQAQGEST------QIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLA 297
Query: 435 FVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVD 488
FV P +YV+N DG+N R++ F+ ++ W P + + +T+ E + D
Sbjct: 298 FVSNRGGSPQIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTA-----RDERNAFD 352
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG---- 544
+ ++NVD + RLT + NN P SP+G+ I+F STRTG L++M AEG
Sbjct: 353 LFTVNVD----TGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGTPQLFVMTAEGNNPL 408
Query: 545 ----GEGYGL 550
G+G GL
Sbjct: 409 ALPMGKGGGL 418
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 39/259 (15%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ P G +AF + P +Y+ +G R + +T V ++ G
Sbjct: 199 LPALGPDGT-VAFTSYRRGQPDLYL-QKEGGEARPIVQNGQMAT-------GVAFSPDGK 249
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A ++ + I V +VDG A R T N+ PS SPDGK + F S R G +Y
Sbjct: 250 RIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVSNRGGSPQIY 309
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
+M+ +G RLT +G ++ T +WSP G+ IAF A D N +F+++ ++ +
Sbjct: 310 VMNVDGTNA---RRLTFQGNYNQT-PDWSPRGDLIAFTARDERN----AFDLFTVNVDTG 361
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q S P FSP+G+ I+F+S G TP ++F + +G+
Sbjct: 362 KITRLTQDQS--NNEEPVFSPNGRLILFSSTRTG-------TP-------QLFVMTAEGN 405
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 406 NPLALPMGKGGGLTPDWAP 424
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D DG +A R LTT G N P++ PDG + F S R G +LY+ EGGE + +
Sbjct: 182 DWDGNNA-RALTTGGIN-LLPALGPDGT-VAFTSYRRGQPDLYLQK-EGGEA---RPIVQ 234
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
T +SPDG+ IA+A + S ++Y+ + +G+ +++ + G + P +
Sbjct: 235 NGQMATGVAFSPDGKRIAYAQAQGE----STQIYVANVDGSDAKRITDT-PYGINSSPSW 289
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDGK + F S+ GG +P +I+ + +DG++ +RLT + TP W P
Sbjct: 290 SPDGKRLAFVSNRGG-------SP-------QIYVMNVDGTNARRLTFQGNYNQTPDWSP 335
Query: 676 R 676
R
Sbjct: 336 R 336
>gi|115378912|ref|ZP_01466048.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|115364091|gb|EAU63190.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
Length = 366
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 31/190 (16%)
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFD-GSFPSFSPKGDRIA 434
SPD R+ Y + +G ST Q+ + N+ S I+ + S PS+SP G R+A
Sbjct: 186 FSPDGKRIAYAQAQGEST------QIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLA 239
Query: 435 FVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVD 488
FV P +YV+N DG+N R++ F+ ++ W P + + +T+ E + D
Sbjct: 240 FVSNRGGSPQIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTA-----RDERNAFD 294
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG---- 544
+ ++NVD + RLT + NN P SP+G+ I+F STRTG L++M AEG
Sbjct: 295 LFTVNVD----TGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGTPQLFVMTAEGNNPL 350
Query: 545 ----GEGYGL 550
G+G GL
Sbjct: 351 ALPMGKGGGL 360
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 39/259 (15%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ P G +AF + P +Y+ +G R + +T V ++ G
Sbjct: 141 LPALGPDGT-VAFTSYRRGQPDLYL-QKEGGEARPIVQNGQMAT-------GVAFSPDGK 191
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A ++ + I V +VDG A R T N+ PS SPDGK + F S R G +Y
Sbjct: 192 RIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVSNRGGSPQIY 251
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
+M+ +G RLT +G ++ T +WSP G+ IAF A D N +F+++ ++ +
Sbjct: 252 VMNVDGTNA---RRLTFQGNYNQT-PDWSPRGDLIAFTARDERN----AFDLFTVNVDTG 303
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q S P FSP+G+ I+F+S G TP ++F + +G+
Sbjct: 304 KITRLTQDQS--NNEEPVFSPNGRLILFSSTRTG-------TP-------QLFVMTAEGN 347
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 348 NPLALPMGKGGGLTPDWAP 366
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D DG +A R LTT G N P++ PDG + F S R G +LY+ EGGE + +
Sbjct: 124 DWDGNNA-RALTTGGIN-LLPALGPDGT-VAFTSYRRGQPDLYLQK-EGGEA---RPIVQ 176
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
T +SPDG+ IA+A + S ++Y+ + +G+ +++ + G + P +
Sbjct: 177 NGQMATGVAFSPDGKRIAYAQAQGE----STQIYVANVDGSDAKRITDT-PYGINSSPSW 231
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDGK + F S+ GG +P +I+ + +DG++ +RLT + TP W P
Sbjct: 232 SPDGKRLAFVSNRGG-------SP-------QIYVMNVDGTNARRLTFQGNYNQTPDWSP 277
Query: 676 R 676
R
Sbjct: 278 R 278
>gi|83950088|ref|ZP_00958821.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM]
gi|83837987|gb|EAP77283.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM]
Length = 440
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP VYV++ +RR + ++ +F+ + P VVY+
Sbjct: 212 PRFSPTGDRVLYTSYESGFPRVYVLDVASVSRRLLESQDGTMSFAPRFSPDGRTVVYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI ++++ A +RLT PS SPDG+ IVF S R+G
Sbjct: 270 ----LIQGGNTDIYTMDI----ATGASQRLTNAPSIETAPSFSPDGRQIVFESDRSGTNQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+GGE R++ G WSP G++IAF G F + ++ NG
Sbjct: 322 IYVMNAQGGEA---RRISGGTGQYGTPVWSPRGDYIAFTKQ----SKGRFHIGVMRVNGE 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G Q ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGA-----------QGQSRLWSVDITGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+L+++ Q P+W P
Sbjct: 421 NLRQV-QTPGGASDPSWSP 438
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 40/227 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+++ D DG + ++ LT + P SP G +++ S +G+ +Y++D
Sbjct: 189 LSIMDYDGAN-LKYLTDSSSIVLAPRFSPTGDRVLYTSYESGFPRVYVLDVASVS----R 243
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RL E TM +SPDG + ++ + G+ ++Y + ++L + S
Sbjct: 244 RLLESQ-DGTMSFAPRFSPDGRTVVYSLIQ----GGNTDIYTMDIATGASQRLTNAPSIE 298
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
A P FSPDG+ IVF SD G + +I+ + G + +R++ + +
Sbjct: 299 TA--PSFSPDGRQIVFESDRSGTN--------------QIYVMNAQGGEARRISGGTGQY 342
Query: 669 GTPAWGPR-----FIRP------VDVEEVKNEQCAFEDCHWLNETPN 704
GTP W PR F + + V V E+ +L+E P
Sbjct: 343 GTPVWSPRGDYIAFTKQSKGRFHIGVMRVNGEEERLLTASFLDEGPT 389
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 88/255 (34%), Gaps = 75/255 (29%)
Query: 370 THHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLLLENIKSPLPDISLFRFDGSF 423
T P SPD V Y +GG+T G +Q L + P I +
Sbjct: 252 TMSFAPRFSPDGRTVVYSLIQGGNTDIYTMDIATGASQRL-----TNAPSIE------TA 300
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
PSFSP G +I F SD S Q+Y NA GG
Sbjct: 301 PSFSPDGRQIVF---------ESDRSGTNQIYVMNA---------------QGGE----- 331
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
RR++ P SP G +I F G ++ +M
Sbjct: 332 -------------------ARRISGGTGQYGTPVWSPRGDYIAFTKQSKGRFHIGVMRVN 372
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKLI 602
G E RL + D WSP+G I F R+ G+ G ++ + G LR
Sbjct: 373 GEE----ERLLTASFLDEGPTWSPNGRVIMFT--RETQGAQGQSRLWSVDITGRNLR--- 423
Query: 603 QSGSAGRANHPYFSP 617
Q + G A+ P +SP
Sbjct: 424 QVQTPGGASDPSWSP 438
>gi|347838124|emb|CCD52696.1| similar to prolyl oligopeptidase [Botryotinia fuckeliana]
Length = 688
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 159/636 (25%), Positives = 244/636 (38%), Gaps = 136/636 (21%)
Query: 104 PPPLQLIYVTERNG--TSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEV 161
P +I+ TERNG S+IY R ++ G E + V+ P
Sbjct: 117 PDGKYVIFTTERNGDGQSDIY--------------RVKVDGTGLE--SLVETP------- 153
Query: 162 NGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--PYGVA 217
S +D +LS G L YVST N A ++ +L TG+ LT P
Sbjct: 154 -----SFEDAGVLSPDGTTLAYVSTQGNFT------ANIWVKDLTTGVAFNLTNTPTTAG 202
Query: 218 D-------FSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKI 265
D F P+ SP G++ A +S N W G + ++ ++ R +G+ ++
Sbjct: 203 DNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFSQV 262
Query: 266 VENGGW----PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
V G+ P W D S + F+ + E+ Y + T+ S+ T GL
Sbjct: 263 VTKAGYSLGSPKWSPDGSRIIFYEMTREN----TYNAHMTSVDSAETQIASVDVAT--GL 316
Query: 321 HAFTPATSPG---NNKFI---AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
+ G N +F+ V S+ +I + + + N
Sbjct: 317 DYVYHTSGVGCKVNGQFVTADVVGFNTKGSTDDNIG----INYNGTGAANYTTILGDMRN 372
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---LFRFDGSFPSFSPKGD 431
P SPD + V Y K R ++ PL +RF FP S K +
Sbjct: 373 PAWSPDGTLVIYEKTDFDPVRP----------MEKPLYSWDGDYEYRFTDVFPMLS-KQN 421
Query: 432 RIAFVEF----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAV 471
++A + + +N DG++ V+ AF W E +
Sbjct: 422 KLAITQKQLGNSSIVTMNPDGTDLDLVFDVFSTNQTSSAGTSSGLAGAFQPSWTADGEWI 481
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFR 528
+ G F I + + S +LT N FPS SPDG IV+R
Sbjct: 482 TFGLGYWFFERSIEPGWIYRVAANG----SYYEQLTFGEAGVSNAGFPSYSPDGTKIVYR 537
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGP---WSDTMCN---WSPDGEWIAFASDR---- 578
G LY + G + L +G +DT N WSPDGE I F
Sbjct: 538 --ECGPAPLYCI------GLRILNLADGTVTNLTDTWDNTPGWSPDGERIVFTRRNHLNF 589
Query: 579 -DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637
D + S+++Y I PNGTGL ++ SG+ H +S DG+ I+++S G E
Sbjct: 590 DDLSSTDSYDVYTIFPNGTGLTQVTTSGA--NDAHAVWSADGR-ILYSSGMYGFREESPL 646
Query: 638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ +QPYG+I + DGS+ LT + +ED P +
Sbjct: 647 YDNAFQPYGQIISMNFDGSNKTMLTDSMWEDSMPLY 682
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ N+DGSN R++ ++ + + P + V++T+ + + DI + VD
Sbjct: 89 LYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTE----RNGDGQSDIYRVKVDG- 143
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTEG 556
+ + L +SPDG + + ST+ + N+++ D G + L
Sbjct: 144 ---TGLESLVETPSFEDAGVLSPDGTTLAYVSTQGNFTANIWVKDLTTGVAFNLTNTPTT 200
Query: 557 PWSDTMCN------WSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGLR 599
+ + + +SPDGEWIAF+SDR+ +G +Y I PNG+
Sbjct: 201 AGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFS 260
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
+++ + P +SPDG I+F
Sbjct: 261 QVVTKAGYSLGS-PKWSPDGSRIIF 284
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 15/209 (7%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGE 546
+ ++ + + DG + L + + + SPDGK+++F + R G ++Y + +
Sbjct: 86 VSTLYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTERNGDGQSDIYRVKV---D 142
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G GL L E P + SPDG +A+ S + N + + L G +
Sbjct: 143 GTGLESLVETPSFEDAGVLSPDGTTLAYVSTQGNFTANIWVKDLT--TGVAFNLTNTPTT 200
Query: 607 AGRAN------HPYFSPDGKSIVFTSDYG-GISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
AG P FSPDG+ I F+SD + T ++ ++KI+ +GSD
Sbjct: 201 AGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFS 260
Query: 660 R-LTQNSFEDGTPAWGPRFIRPVDVEEVK 687
+ +T+ + G+P W P R + E +
Sbjct: 261 QVVTKAGYSLGSPKWSPDGSRIIFYEMTR 289
>gi|99082205|ref|YP_614359.1| translocation protein TolB [Ruegeria sp. TM1040]
gi|118574598|sp|Q1GE19.1|TOLB_SILST RecName: Full=Protein TolB; Flags: Precursor
gi|99038485|gb|ABF65097.1| TolB-like protein [Ruegeria sp. TM1040]
Length = 441
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P + +VY+
Sbjct: 212 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQ- 270
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ D+ S++++ + +RLT+ PS SPDG IVF S R+G
Sbjct: 271 -----SQGGNTDLFSMDINSGN----PQRLTSAPSIETAPSFSPDGSQIVFESDRSGTSQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G++IAF +G F + ++ +G+
Sbjct: 322 LYVMSASGGEA---KRISFGQGRYGTPVWSPRGDYIAFTKQN----AGRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S + ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGQ-----------ARLYSVDISGR 420
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D P+W P
Sbjct: 421 NLKPVKTPDGASD--PSWSP 438
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 111/254 (43%), Gaps = 48/254 (18%)
Query: 428 PKGDR---IAFVEFPGV---YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
PK DR +A +++ G Y+ NSD + FS P + V+YTS
Sbjct: 181 PKNDRKKRLAIMDYDGANVQYLTNSDA-----IVLAPRFS----PTGDRVLYTS------ 225
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
E I+V DV V NG + P +P+G+ IV+ ++ G +L+ MD
Sbjct: 226 ---YESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQSQGGNTDLFSMD 282
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
G RLT P +T ++SPDG I F SDR SG+ ++Y++ +G G K
Sbjct: 283 INSGN---PQRLTSAPSIETAPSFSPDGSQIVFESDR----SGTSQLYVMSASG-GEAKR 334
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
I G GR P +SP G I FT G I ++ DGS+ +RL
Sbjct: 335 ISFGQ-GRYGTPVWSPRGDYIAFTKQNAG--------------RFHIGVMRTDGSE-ERL 378
Query: 662 TQNSFEDGTPAWGP 675
SF D P W P
Sbjct: 379 LTASFLDEGPTWSP 392
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D G
Sbjct: 189 LAIMDYDGAN-VQYLTNSDAIVLAPRFSPTGDRVLYTSYESGFPQIHVLDV----GRVQR 243
Query: 552 R-LTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R L+ G S + ++P+G+ I ++ + G+ +++ + N ++L + S
Sbjct: 244 RVLSAGNGSMSFAPRFAPNGQTIVYSQSQ----GGNTDLFSMDINSGNPQRLTSAPSIET 299
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
A P FSPDG IVF SD G S +++ + G + KR++ G
Sbjct: 300 A--PSFSPDGSQIVFESDRSGTS--------------QLYVMSASGGEAKRISFGQGRYG 343
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 344 TPVWSPR 350
>gi|354593767|ref|ZP_09011810.1| translocation protein TolB [Commensalibacter intestini A911]
gi|353672878|gb|EHD14574.1| translocation protein TolB [Commensalibacter intestini A911]
Length = 453
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 27/207 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP ++IAF+ + P VY+ N +R + + +F+ + P +VV +
Sbjct: 222 PRFSPVSNQIAFMSYVNDRPRVYLFNLQTGQQRILGDFSGISFAPRFSPDGRSVVMS--- 278
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + DI +++ + R+LT++G + P SPDG IVF S R G + L
Sbjct: 279 ---VTRGAGSDIYVVDLAS----GSKRQLTSSGAIDTSPCYSPDGSKIVFSSDRGGKQQL 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG G HR++ G S WSP G+ IAF SG F M ++ P+GTG
Sbjct: 332 YIMSASGG---GAHRISYGSGSYASPVWSPRGDVIAFVRI-----SGGFSMGVMAPDGTG 383
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 384 ERILTQGFT---VESPTFCPNGRVLAF 407
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG+ +V TR ++Y++D G +LT DT +SPDG I F+
Sbjct: 266 PRFSPDGRSVVMSVTRGAGSDIYVVDLASGS---KRQLTSSGAIDTSPCYSPDGSKIVFS 322
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
SDR G ++Y++ +G G ++ S +G P +SP G I F GG S
Sbjct: 323 SDR----GGKQQLYIMSASGGGAHRI--SYGSGSYASPVWSPRGDVIAFVRISGGFS 373
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG ++ RL T+GK P SP I F S +Y+ + + G+ L
Sbjct: 199 LAVMDYDGANS--RLLTSGKWLVLTPRFSPVSNQIAFMSYVNDRPRVYLFNLQTGQQRIL 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ ++ +SPDG + + R G+GS ++Y++ R+L SG+
Sbjct: 257 GDFSGISFAP---RFSPDGRSVVMSVTR---GAGS-DIYVVDLASGSKRQLTSSGAID-- 307
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF+SD GG +++ + G R++ S +
Sbjct: 308 TSPCYSPDGSKIVFSSDRGGKQ--------------QLYIMSASGGGAHRISYGSGSYAS 353
Query: 671 PAWGPR 676
P W PR
Sbjct: 354 PVWSPR 359
>gi|154290642|ref|XP_001545913.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10]
Length = 674
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 159/636 (25%), Positives = 244/636 (38%), Gaps = 136/636 (21%)
Query: 104 PPPLQLIYVTERNG--TSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEV 161
P +I+ TERNG S+IY R ++ G E + V+ P
Sbjct: 103 PDGKYVIFTTERNGDGQSDIY--------------RVKVDGTGLE--SLVETP------- 139
Query: 162 NGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--PYGVA 217
S +D +LS G L YVST N A ++ +L TG+ LT P
Sbjct: 140 -----SFEDAGVLSPDGTTLAYVSTQGNFT------ANIWVKDLTTGVAFNLTNTPTTAG 188
Query: 218 D-------FSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKI 265
D F P+ SP G++ A +S N W G + ++ ++ R +G+ ++
Sbjct: 189 DNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFSQV 248
Query: 266 VENGGW----PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
V G+ P W D S + F+ + E+ Y + T+ S+ T GL
Sbjct: 249 VTKAGYSLGSPKWSPDGSRIIFYEMTREN----TYNAHMTSVDSAETQIASVDVAT--GL 302
Query: 321 HAFTPATSPG---NNKFI---AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
+ G N +F+ V S+ +I + + + N
Sbjct: 303 DYVYHTSGVGCKVNGQFVTADVVGFNTKGSTDDNIG----INYNGTGAANYTTILGDMRN 358
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---LFRFDGSFPSFSPKGD 431
P SPD + V Y K R ++ PL +RF FP S K +
Sbjct: 359 PAWSPDGTLVIYEKTDFDPVRP----------MEKPLYSWDGDYEYRFTDVFPMLS-KQN 407
Query: 432 RIAFVEF----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAV 471
++A + + +N DG++ V+ AF W E +
Sbjct: 408 KLAITQKQLGNSSIVTMNPDGTDLDLVFDVFSTNQTSSAGTSSGLAGAFQPSWTADGEWI 467
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFR 528
+ G F I + + S +LT N FPS SPDG IV+R
Sbjct: 468 TFGLGYWFFERSIEPGWIYRVAANG----SYYEQLTFGEAGVSNAGFPSYSPDGTKIVYR 523
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGP---WSDTMCN---WSPDGEWIAFASDR---- 578
G LY + G + L +G +DT N WSPDGE I F
Sbjct: 524 --ECGPAPLYCI------GLRILNLADGTVTNLTDTWDNTPGWSPDGERIVFTRRNHLNF 575
Query: 579 -DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637
D + S+++Y I PNGTGL ++ SG+ H +S DG+ I+++S G E
Sbjct: 576 DDLSSTDSYDVYTIFPNGTGLTQVTTSGA--NDAHAVWSADGR-ILYSSGMYGFREESPL 632
Query: 638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ +QPYG+I + DGS+ LT + +ED P +
Sbjct: 633 YDNAFQPYGQIISMNFDGSNKTMLTDSMWEDSMPLY 668
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ N+DGSN R++ ++ + + P + V++T+ + + DI + VD
Sbjct: 75 LYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTE----RNGDGQSDIYRVKVDG- 129
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTEG 556
+ + L +SPDG + + ST+ + N+++ D G + L
Sbjct: 130 ---TGLESLVETPSFEDAGVLSPDGTTLAYVSTQGNFTANIWVKDLTTGVAFNLTNTPTT 186
Query: 557 PWSDTMCN------WSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGLR 599
+ + + +SPDGEWIAF+SDR+ +G +Y I PNG+
Sbjct: 187 AGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFS 246
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
+++ + P +SPDG I+F
Sbjct: 247 QVVTKAGYSLGS-PKWSPDGSRIIF 270
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 15/209 (7%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGE 546
+ ++ + + DG + L + + + SPDGK+++F + R G ++Y + +
Sbjct: 72 VSTLYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTERNGDGQSDIYRVKV---D 128
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G GL L E P + SPDG +A+ S + N + + L G +
Sbjct: 129 GTGLESLVETPSFEDAGVLSPDGTTLAYVSTQGNFTANIWVKDLT--TGVAFNLTNTPTT 186
Query: 607 AGRAN------HPYFSPDGKSIVFTSDYG-GISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
AG P FSPDG+ I F+SD + T ++ ++KI+ +GSD
Sbjct: 187 AGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFS 246
Query: 660 R-LTQNSFEDGTPAWGPRFIRPVDVEEVK 687
+ +T+ + G+P W P R + E +
Sbjct: 247 QVVTKAGYSLGSPKWSPDGSRIIFYEMTR 275
>gi|94970959|ref|YP_593007.1| Xaa-Pro aminopeptidase-like protein [Candidatus Koribacter
versatilis Ellin345]
gi|94553009|gb|ABF42933.1| WD40-like beta Propeller [Candidatus Koribacter versatilis
Ellin345]
Length = 298
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 34/268 (12%)
Query: 370 THHLNPFISPDSSRVGYHKCRGGSTRE-----DGNNQLLLENIKSPLPDISLFRFDGSFP 424
T +++P SPD + Y G + DG N L L + D P
Sbjct: 35 TQNMDPTFSPDGKEMIYISVVAGKEQLFRVGLDGKNPLQLTRDDA----------DHEDP 84
Query: 425 SFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGP 478
++SP G +AFV + +++++ DG N + K + W P V++ +
Sbjct: 85 AWSPDGKHVAFVLIHEKVEQIHLMDPDGGNVTPLTPKESKTIHPSWSPDSRRVIFCTDDD 144
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ ++ DI+++++ +L + G N FP SPDG + FR G +N
Sbjct: 145 LAPPKKNDSDILAMDI----ATHETTKLISGGVN-TFPVWSPDGTKLAFRRM-LGERNSE 198
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ A G LT P D WSPDG+ IAFAS+R G+ E+++++ +G+G+
Sbjct: 199 VFLANE-NGSDPKNLTNDPAFDGWPAWSPDGKQIAFASNR----RGNHEIFVMNADGSGV 253
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTS 626
RK + S GRA P +S DGK + FT+
Sbjct: 254 RK--AANSEGRATSPKWSKDGKKLYFTN 279
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN----------NAFPSVSPDGKWIVF 527
P F+ + E+ IS+ V G + R+ +GKN + P+ SPDGK + F
Sbjct: 40 PTFSPDGKEMIYISV----VAGKEQLFRVGLDGKNPLQLTRDDADHEDPAWSPDGKHVAF 95
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD--NPGSGS 585
+ +++MD +GG + LT +WSPD + F +D D P
Sbjct: 96 VLIHEKVEQIHLMDPDGGN---VTPLTPKESKTIHPSWSPDSRRVIFCTDDDLAPPKKND 152
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
++ + KLI S G P +SPDG + F G +
Sbjct: 153 SDILAMDIATHETTKLI---SGGVNTFPVWSPDGTKLAFRRMLG-------------ERN 196
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E+F +GSD K LT + DG PAW P
Sbjct: 197 SEVFLANENGSDPKNLTNDPAFDGWPAWSP 226
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P+FSP G + ++ ++ V DG N Q+ +A W P + V +
Sbjct: 40 PTFSPDGKEMIYISVVAGKEQLFRVGLDGKNPLQLTRDDADHEDPAWSPDGKHVAFV--- 96
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST------R 531
E E I++ D DG V LT PS SPD + ++F + +
Sbjct: 97 --LIHEKVE----QIHLMDPDG-GNVTPLTPKESKTIHPSWSPDSRRVIFCTDDDLAPPK 149
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
++ MD E L ++ G +T WSPDG +AF R G + E++L
Sbjct: 150 KNDSDILAMDIATHETTKL--ISGG--VNTFPVWSPDGTKLAF---RRMLGERNSEVFLA 202
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ NG+ + L + P +SPDGK I F S+ G EIF +
Sbjct: 203 NENGSDPKNL--TNDPAFDGWPAWSPDGKQIAFASNRRG--------------NHEIFVM 246
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
DGS +++ + +P W
Sbjct: 247 NADGSGVRKAANSEGRATSPKW 268
>gi|440749201|ref|ZP_20928449.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
gi|436482206|gb|ELP38329.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
Length = 331
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 14/160 (8%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
V LT N + + S SPDGK+I+F S R G +Y MDA+G L+ P +D +
Sbjct: 81 VNNLTQNKALDFWSSWSPDGKYILFYSNRDGNNEIYRMDADGSNP---TNLSNHPANDYL 137
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPDG+ IAF S+RD S + E+Y++ +G+ +R+L + P +SP+GK I
Sbjct: 138 PAWSPDGKTIAFTSNRD---SDNREIYIMAIDGSNVRRLTHNDLFEEV--PTWSPNGKQI 192
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
VFT + + + T + GE+F + +DG + KRLT
Sbjct: 193 VFTRQLEEM-VDTVKTTN-----GELFVMDIDGKNEKRLT 226
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 22/151 (14%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
+ F +TR G +Y M+A+G E ++ LT+ D +WSPDG++I F S+RD G
Sbjct: 59 LAFLTTRDGNFEVYTMNADGRE---VNNLTQNKALDFWSSWSPDGKYILFYSNRD----G 111
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
+ E+Y + +G+ L S P +SPDGK+I FTS+ + E
Sbjct: 112 NNEIYRMDADGSNPTNL--SNHPANDYLPAWSPDGKTIAFTSNRDSDNRE---------- 159
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+ + +DGS+++RLT N + P W P
Sbjct: 160 ---IYIMAIDGSNVRRLTHNDLFEEVPTWSP 187
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 120/265 (45%), Gaps = 45/265 (16%)
Query: 425 SFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGP 478
S+SP G I F +Y +++DGSN + + N + W P + + +TS
Sbjct: 95 SWSPDGKYILFYSNRDGNNEIYRMDADGSNPTNLSNHPANDYLPAWSPDGKTIAFTSNR- 153
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR--------ST 530
S++ E+ I++I DG S VRRLT N P+ SP+GK IVF +
Sbjct: 154 --DSDNREIYIMAI-----DG-SNVRRLTHNDLFEEVPTWSPNGKQIVFTRQLEEMVDTV 205
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+T L++MD +G RLT D+ +SP+G+ IAF S +FE++
Sbjct: 206 KTTNGELFVMDIDGKNE---KRLTFREGYDSGGKFSPNGKKIAFYG---QDSSKNFEIFT 259
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
++ +GT + L + P +SPDGK I +TS T QY +++
Sbjct: 260 MNADGTDVVNL--TNDILEDYSPDWSPDGKWIAYTS----------GTSKQY----DVWV 303
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
I L RLT + TP W P
Sbjct: 304 IHLKSLKKFRLTTEPKRNETPVWRP 328
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 26/252 (10%)
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFV 436
SPD + ++ R DGNN++ + P ++S + P++SP G IAF
Sbjct: 97 SPDGKYILFYSNR------DGNNEIYRMDADGSNPTNLSNHPANDYLPAWSPDGKTIAFT 150
Query: 437 -----EFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDI 489
+ +Y++ DGSN R++ + F V W P + +V+T E ++ +
Sbjct: 151 SNRDSDNREIYIMAIDGSNVRRLTHNDLFEEVPTWSPNGKQIVFTRQLEEMV-DTVKTTN 209
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGY 548
+ V D+DG + +RLT ++ SP+GK I F + ++ M+A+G +
Sbjct: 210 GELFVMDIDGKNE-KRLTFREGYDSGGKFSPNGKKIAFYGQDSSKNFEIFTMNADGTD-- 266
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
+ LT D +WSPDG+WIA+ S S +++++IH L+K +
Sbjct: 267 -VVNLTNDILEDYSPDWSPDGKWIAYTSGT----SKQYDVWVIHL--KSLKKFRLTTEPK 319
Query: 609 RANHPYFSPDGK 620
R P + PD K
Sbjct: 320 RNETPVWRPDQK 331
>gi|404498380|ref|YP_006722486.1| biopolymer transport TolB-like protein [Geobacter metallireducens
GS-15]
gi|418067067|ref|ZP_12704419.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
metallireducens RCH3]
gi|119371044|sp|Q39PS9.1|TOLB_GEOMG RecName: Full=Protein TolB; Flags: Precursor
gi|78195978|gb|ABB33745.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter metallireducens GS-15]
gi|373559428|gb|EHP85725.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
metallireducens RCH3]
Length = 429
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 116/261 (44%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNS-DGSNRRQVYFKNAFST-VWDPVREAVVYTSGG 477
P FSP G I F + P ++ G+ R ++ +T W P + + T
Sbjct: 205 PDFSPSGKEIIFTSYRQGNPDLFRRELFTGAEARISSYRGINATGAWSPDGKTIALT--- 261
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +I +I+ D + RLT P+ SPD + IVF S R G +
Sbjct: 262 ---LSKDGNSEIYTISRDGKN----PHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQI 314
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
+IM+A+G G+ RLT + WSP G+ I ++ G F++Y I+P+GT
Sbjct: 315 FIMNADG---TGVRRLTTSGNYNVSPRWSPKGDRIVYSRQ-----EGGFQIYAINPDGTN 366
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE-IFKIKLDGS 656
+L GS HP +SPDG+ I F+S GG GE I+ ++ DGS
Sbjct: 367 DTRLTSEGSN---EHPRWSPDGRFITFSSTRGG---------------GEGIYVMRADGS 408
Query: 657 DLKRLTQNSFEDGTPAWGPRF 677
R++ D P W PR+
Sbjct: 409 GQTRVSGGKGRDSHPTWSPRW 429
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 42/275 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---- 359
L+ + ++Q++T P SP + I + R+ ELF + +
Sbjct: 184 LMDYDGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNPDLFRRELFTGAEARISSYR 243
Query: 360 -IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR 418
I T SP + +S D + Y R DG N L N + ++S
Sbjct: 244 GINATGAWSPDGKTIALTLSKDGNSEIYTISR------DGKNPHRLTNTSAI--EVS--- 292
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVV 472
P++SP +I FV P ++++N+DG+ R++ + S W P + +V
Sbjct: 293 -----PAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTTSGNYNVSPRWSPKGDRIV 347
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
Y+ + I +IN D + RLT+ G +N P SPDG++I F STR
Sbjct: 348 YSR-------QEGGFQIYAINPDGTNDT----RLTSEG-SNEHPRWSPDGRFITFSSTRG 395
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
G + +Y+M A+G G R++ G D+ WSP
Sbjct: 396 GGEGIYVMRADGS---GQTRVSGGKGRDSHPTWSP 427
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-NPGS 583
I F STR G K +++MD +G+ + +LT+ + ++SP G+ I F S R NP
Sbjct: 170 IAFVSTRAGAKAIFLMDY---DGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNPDL 226
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
E++ TG I S A + SPDGK+I T G S
Sbjct: 227 FRRELF------TGAEARISSYRGINATGAW-SPDGKTIALTLSKDGNS----------- 268
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
EI+ I DG + RLT S + +PAW P + V V +
Sbjct: 269 ---EIYTISRDGKNPHRLTNTSAIEVSPAWSPDVRKIVFVSD 307
>gi|89068040|ref|ZP_01155457.1| translocation protein TolB precursor [Oceanicola granulosus
HTCC2516]
gi|89046279|gb|EAR52336.1| translocation protein TolB precursor [Oceanicola granulosus
HTCC2516]
Length = 446
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP + ++ +R+Q+ + AFS + V+Y+
Sbjct: 217 PRFSPTGDRVIYTSWDSGFPRINAIDVGTVSRQQIPVQAGEMAFSPRFSRDGRQVIYS-- 274
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
SE +DI ++ +RLT+ PS+SPDG+ IVF S R+G +
Sbjct: 275 ----LSEGGNIDIWRTDIT----TGQHQRLTSAPSIETAPSLSPDGQRIVFESDRSGSQQ 326
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M GGE R++ G WSP G+ IAF +G F + ++ +G+
Sbjct: 327 LYVMPVTGGEP---QRISFGEGRYGSPVWSPRGDMIAFTKQH----AGRFHIGVMRTDGS 379
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ ++F+ + G P I+ + + G
Sbjct: 380 EERLLTAS---FLDEGPTWSPNGRVLMFSRETQGADGAP-----------AIYSVDVSGR 425
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+L+R+T +F P+WGP
Sbjct: 426 NLRRVTTPAFAS-DPSWGP 443
>gi|300310549|ref|YP_003774641.1| periplasmic protein of the Tol biopolymer transport system protein
[Herbaspirillum seropedicae SmR1]
gi|300073334|gb|ADJ62733.1| periplasmic component of the Tol biopolymer transport system
protein [Herbaspirillum seropedicae SmR1]
Length = 428
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 136/307 (44%), Gaps = 57/307 (18%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y GG R D + + ++S P IS PS+SP G ++A+V
Sbjct: 164 STRISYVTKSGGEYRLEVADADGEGTQVALRSNEPIIS--------PSWSPDGTKVAYVS 215
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDI 489
F P VY+ N R V FK + S W P R AV T G +
Sbjct: 216 FEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDG-----------L 264
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ V + DG S +RRLT + + P SPDG I F S R+G +Y + +GG
Sbjct: 265 TQVYVINADG-SGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQVYKVGLDGGSP-- 321
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAG 608
R+T + SPDG+ +AF S RD G F++Y + NG +R + GS
Sbjct: 322 -QRVTFNGSYNISPRISPDGKTLAFISRRD----GQFQLYALDLTNGQEIR--LSDGS-- 372
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
R P F+P+GK I++ ++ G G + + +DG +RLT + +
Sbjct: 373 RDQSPSFAPNGKYIMYATEAG--------------RRGSLAVVSVDGRIKQRLTTQAGDI 418
Query: 669 GTPAWGP 675
P WGP
Sbjct: 419 REPTWGP 425
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD ++V Y E + ++N+ + I + F+ S P++SP G
Sbjct: 200 ISPSWSPDGTKVAYVSF------EMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGS 253
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A VYV+N+DGS R++ T + P ++ +TS GGP+
Sbjct: 254 RLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQ--- 310
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ + +D + +R+T NG N P +SPDGK + F S R G LY +D
Sbjct: 311 ------VYKVGLDG----GSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDL 360
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
G+ RL++G D +++P+G++I +A++ GS
Sbjct: 361 TNGQEI---RLSDGS-RDQSPSFAPNGKYIMYATEAGRRGS 397
>gi|254461647|ref|ZP_05075063.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium HTCC2083]
gi|206678236|gb|EDZ42723.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae
bacterium HTCC2083]
Length = 439
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +YV+ RR + ++ +F+ + P VVY+
Sbjct: 210 PRFSPTGDRVLYTSYETGFPRIYVLEVGSVKRRVLESQDGSMSFAPRFSPDGRTVVYS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI ++V V RLT+ PS SPDG IVF S R+G +
Sbjct: 268 ----LARGGNTDIFRMDVASGSSV----RLTSGPAIETAPSYSPDGSRIVFESDRSGSQQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+YIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 320 IYIMSANGGEA---KRISFGKGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRTDGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G + ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGSAGS-----------ASLYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LKR+ T+ D P+W P
Sbjct: 419 NLKRIPTEGGASD--PSWSP 436
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 31/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S TG+ +Y+++ G
Sbjct: 187 LAIMDYDGAN-VQYLTGSEHLVLAPRFSPTGDRVLYTSYETGFPRIYVLEV----GSVKR 241
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSA 607
R+ E +M +SPDG + ++ R G+ +++ + +G+ +R + SG A
Sbjct: 242 RVLESQ-DGSMSFAPRFSPDGRTVVYSLAR----GGNTDIFRMDVASGSSVR--LTSGPA 294
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P +SPDG IVF SD G +I+ + +G + KR++
Sbjct: 295 -IETAPSYSPDGSRIVFESDRSGSQ--------------QIYIMSANGGEAKRISFGKGR 339
Query: 668 DGTPAWGPR 676
GTP W PR
Sbjct: 340 YGTPVWSPR 348
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 91/252 (36%), Gaps = 69/252 (27%)
Query: 370 THHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFRFDGSFPSF 426
+ P SPD V Y RGG+T R D + + P + + PS+
Sbjct: 250 SMSFAPRFSPDGRTVVYSLARGGNTDIFRMDVASGSSVRLTSGPAIETA--------PSY 301
Query: 427 SPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSE 486
SP G RI F SD S +Q+Y +A +GG
Sbjct: 302 SPDGSRIVF---------ESDRSGSQQIYIMSA---------------NGG--------- 328
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
+R++ P SP G I F G ++ +M +G E
Sbjct: 329 ---------------EAKRISFGKGRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRTDGSE 373
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-GSFEMYLIHPNGTGLRKLIQSG 605
RL + D WSP+G I F R+ GS GS +Y + +G L+++ G
Sbjct: 374 ----ERLLTASFLDEGPTWSPNGRVIMFT--RETQGSAGSASLYSVDISGRNLKRIPTEG 427
Query: 606 SAGRANHPYFSP 617
A+ P +SP
Sbjct: 428 G---ASDPSWSP 436
>gi|21673468|ref|NP_661533.1| TolB protein [Chlorobium tepidum TLS]
gi|32699704|sp|Q8KEQ0.1|TOLB_CHLTE RecName: Full=Protein TolB; Flags: Precursor
gi|21646573|gb|AAM71875.1| tolB protein, putative [Chlorobium tepidum TLS]
Length = 434
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 127/282 (45%), Gaps = 47/282 (16%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG N + L N +S ISL P+ SP G IA+ ++ P +Y+ N + G+
Sbjct: 191 DGENVVQLTNSRS----ISLT------PAVSPDGTYIAWTDYTSGKPNLYIKNIATGAKV 240
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
S W P +V T S + D+ I D + RRLT G
Sbjct: 241 SVNKHGVCISPAWRPGTNTLVTT------LSYEGDQDLYLIRADG----TVERRLTKGGG 290
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
+ P+ SPDG + F STR G ++I D G+ + RLT +T +WSP+G+
Sbjct: 291 IDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQ---VRRLTYSGIYNTQPSWSPNGDK 347
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
I ++S + SG ++ I+ +G+GL +L SGS G HP +SPDG IVF+S G
Sbjct: 348 ILYSSMQK---SGEINIFSINVDGSGLLQLT-SGS-GNNEHPSWSPDGSMIVFSSTRDGR 402
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
++ + DGS+ + L E P+W
Sbjct: 403 R--------------RLYVMNADGSNQRPLLNMQGEQQQPSW 430
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG------ 545
I + D DG + V+ LT + + P+VSPDG +I + +G NLYI + G
Sbjct: 185 IYMCDFDGENVVQ-LTNSRSISLTPAVSPDGTYIAWTDYTSGKPNLYIKNIATGAKVSVN 243
Query: 546 ----------------------------------EGYGLHRLTEGPWSDTMCNWSPDGEW 571
+G RLT+G D +SPDG
Sbjct: 244 KHGVCISPAWRPGTNTLVTTLSYEGDQDLYLIRADGTVERRLTKGGGIDVSPTFSPDGSK 303
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+AF S R G ++++ N +R+L SG P +SP+G I+++S
Sbjct: 304 MAFVSTRQ----GGPQIFIQDMNSGQVRRLTYSGIYN--TQPSWSPNGDKILYSS----- 352
Query: 632 SAEPISTPHQYQPYGEI--FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q GEI F I +DGS L +LT S + P+W P
Sbjct: 353 ----------MQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSP 388
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 33/266 (12%)
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
RT +Y + +LT +PAVSP G Y A Y + + ++ ++T
Sbjct: 179 RTGNKEIYMCDFDGENVVQLTNSRSISLTPAVSPDGTYIAWTDYTSGKPNLYIKNIATGA 238
Query: 252 YIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
+ + + G V I P W + S E D +Y L+ +
Sbjct: 239 KVSVNKHG---VCIS-----PAWRPGTNTLVTTLSYEGDQ-DLY--------LIRADGTV 281
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
+R+T G +P SP +K V+TR+ I + D+ ++ R +
Sbjct: 282 ERRLTKGGGIDVSPTFSPDGSKMAFVSTRQGGP---QIFIQDMNSG---QVRRLTYSGIY 335
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSFPSFSPKG 430
+ P SP+ ++ Y S ++ G + N+ S L ++ + PS+SP G
Sbjct: 336 NTQPSWSPNGDKILYS-----SMQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSPDG 390
Query: 431 DRIAFVEFPG----VYVVNSDGSNRR 452
I F +YV+N+DGSN+R
Sbjct: 391 SMIVFSSTRDGRRRLYVMNADGSNQR 416
>gi|254501514|ref|ZP_05113665.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia
alexandrii DFL-11]
gi|222437585|gb|EEE44264.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia
alexandrii DFL-11]
Length = 449
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++N + R V + F+ + P ++VV +
Sbjct: 221 PRFSPTSQEITYMSYAGADPSVYLLNIETGQREIVGNFPGMTFAPRFSPDGQSVVMS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ S +I +++ RLT + + PS SPD + IVF S R G + L
Sbjct: 278 ---LQQGSNANIFKMDLRS----RQTTRLTNSAAIDTSPSFSPDSQRIVFESDRGGSQQL 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG+ R++ GP + WSP G+ IAF G F + ++ P+G G
Sbjct: 331 YVMSASGGQA---QRISFGPGRYSTPVWSPRGDLIAFTKQH----QGRFMIGVMRPDGKG 383
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P +SP+G+ +VF D G + P +++ + L G
Sbjct: 384 ERVLTE----GYHNEGPAWSPNGRVLVFFRDTPGANGGP-----------QVWTVDLTGY 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +RL +F P+W P
Sbjct: 429 NEQRLETPAFAS-DPSWSP 446
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 26/199 (13%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F E+ D + + + D DG + VR LT P SP + I + S ++
Sbjct: 184 FVDETGPKDKRVKRLALMDQDGAN-VRYLTRGDDLVLTPRFSPTSQEITYMSYAGADPSV 242
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+++ E G+ + P +SPDG+ + S + + F+M L T
Sbjct: 243 YLLNIETGQREIVGNF---PGMTFAPRFSPDGQSVVM-SLQQGSNANIFKMDLRSRQTTR 298
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L + SA P FSPD + IVF SD GG +++ + G
Sbjct: 299 L-----TNSAAIDTSPSFSPDSQRIVFESDRGGSQ--------------QLYVMSASGGQ 339
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 340 AQRISFGPGRYSTPVWSPR 358
>gi|344198374|ref|YP_004782700.1| protein tolB [Acidithiobacillus ferrivorans SS3]
gi|343773818|gb|AEM46374.1| Protein tolB [Acidithiobacillus ferrivorans SS3]
Length = 423
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 141/339 (41%), Gaps = 61/339 (17%)
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFI--------SPDSSRVGYHKCRGGSTREDGNNQLLL 404
+L+ +F + HH+ I P +SR+ Y R+ G N LL
Sbjct: 126 ELIAKRFTCSAAELHMTAHHVADVIYQAFTGKPGPFASRIAY-------VRQTGENYELL 178
Query: 405 ---ENIKSPLPDISLFRFDGSFPSFSP----KGDRIAFVEFP---GVYVVNSDGSNRRQV 454
+ +P P + G P FSP R+A+ + V V + RRQ
Sbjct: 179 VAESDGWNPHPIVR-----GIMPVFSPVWSPDNHRLAYTTYANARAVIYVQDLATGRRQS 233
Query: 455 YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514
+ A ++ G E A S + V ++ R+LT + N
Sbjct: 234 IAPGG------EIVSAPAFSPNGEELAYARSSGGHTELYVANLR-TGQRRKLTNDDAINT 286
Query: 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
P+ SPDG I+F S R G +Y M+A GG G+HRL+ + +SP G IAF
Sbjct: 287 SPTWSPDGSQIIFVSDRAGGPQIYGMNASGG---GIHRLSYAGGYNAGPVYSPAGNAIAF 343
Query: 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
+G + + +++P+G+G+R L + G +HP F+ +G+ I++ + GG
Sbjct: 344 IHRT----AGVYALAVMNPDGSGVRVL---DAQGNCDHPSFAGNGQMILYGTHRGG---- 392
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + ++ LDG + L N+ ED PAW
Sbjct: 393 ----------HKVLAEVSLDGKTMAILHSNAGEDSQPAW 421
>gi|328953807|ref|YP_004371141.1| protein tolB [Desulfobacca acetoxidans DSM 11109]
gi|328454131|gb|AEB09960.1| Protein tolB [Desulfobacca acetoxidans DSM 11109]
Length = 427
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 121/281 (43%), Gaps = 41/281 (14%)
Query: 401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF 456
+L + +I ++ +R PS+SP G + F FP +Y VN + R++
Sbjct: 179 ELYVMDIGGTPKQLTRYRTLTLTPSWSPDGQEVFFCSYRGGFPALYAVNPGSGSIRKLST 238
Query: 457 KNAFSTVWDPVREAVVYTSGGPE--FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514
+ V +GGP A+ ++ I + D G + +RLT + +
Sbjct: 239 HGTLN----------VTPAGGPRGLLAATLNKSGDQEIYLLDRQG-NIKQRLTQSPGIDI 287
Query: 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
P+ SPDG + F S R G +YI+ GG+ RLT G + WSP G+ IA+
Sbjct: 288 SPTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQ---PRRLTFGGTYNVSPAWSPRGDLIAY 344
Query: 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
AS G F++++I P G G R++ + GS P +SPDG I +S GG SA
Sbjct: 345 ASRT----GGGFQIFVISPQGGGARQITREGS---NESPTWSPDGSFIACSSTRGGTSA- 396
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+ + + RLT PAW P
Sbjct: 397 -------------IYLVNVKTGTATRLTTMPGAQTQPAWAP 424
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 408 KSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAF--S 461
+SP DIS P+FSP G ++AFV P +Y+V++ G R++ F + S
Sbjct: 281 QSPGIDIS--------PTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQPRRLTFGGTYNVS 332
Query: 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
W P + + Y S I I+ R++T G N + P+ SPD
Sbjct: 333 PAWSPRGDLIAYAS------RTGGGFQIFVISPQG----GGARQITREGSNES-PTWSPD 381
Query: 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
G +I STR G +Y+++ + G RLT P + T W+P G+
Sbjct: 382 GSFIACSSTRGGTSAIYLVNVKTGTA---TRLTTMPGAQTQPAWAPGGK 427
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 31/215 (14%)
Query: 467 VREAVVYTSG-----GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
V E V++ +G A S D+ + V D+ G ++LT PS SPD
Sbjct: 150 VNEVVLFLTGERGVPQGRLAFISGGTDVRELYVMDIGGTP--KQLTRYRTLTLTPSWSPD 207
Query: 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
G+ + F S R G+ LY ++ G + +L+ + N +P G + N
Sbjct: 208 GQEVFFCSYRGGFPALYAVNPGSGS---IRKLS----THGTLNVTPAGGPRGLLAATLNK 260
Query: 582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
SG E+YL+ G ++L QS G P FSPDG + F S+ GG P
Sbjct: 261 -SGDQEIYLLDRQGNIKQRLTQS--PGIDISPTFSPDGAQVAFVSNRGG---NP------ 308
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+I+ + G +RLT + +PAW PR
Sbjct: 309 -----QIYIVSTGGGQPRRLTFGGTYNVSPAWSPR 338
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 30/218 (13%)
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
R + A+Y+ +G R+L+ +G + +PA P G A NK D E+ +L
Sbjct: 217 RGGFPALYAVNPGSGSIRKLSTHGTLNVTPAGGPRGLLAATL---NKSGDQEIYLLD--- 270
Query: 252 YIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
R G + ++ ++ G +D S F + ++S + PQ +VST
Sbjct: 271 -----RQGNIKQRLTQSPG----IDISPT-FSPDGAQVAFVS-NRGGNPQIYIVSTGGGQ 319
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
+R+T G + +PA SP IA A+R T I + ++TR +
Sbjct: 320 PRRLTFGGTYNVSPAWSP-RGDLIAYASR--TGGGFQIFVISPQGGGARQITR----EGS 372
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
+ +P SPD S + RGG++ + L N+K+
Sbjct: 373 NESPTWSPDGSFIACSSTRGGTS------AIYLVNVKT 404
>gi|405373187|ref|ZP_11028040.1| tolB protein precursor [Chondromyces apiculatus DSM 436]
gi|397087951|gb|EJJ18968.1| tolB protein precursor [Myxococcus sp. (contaminant ex DSM 436)]
Length = 430
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 32/201 (15%)
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD R+ Y G S + DG+ L + L + P+FSP G R
Sbjct: 246 SPDGKRIAYSLAEGESAQIHVANVDGSGNRALTDTPYGL---------NTSPTFSPDGKR 296
Query: 433 IAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSE 486
IAFV P VYV+N+DG++ R++ F+ ++ W P + +V+T+ E +
Sbjct: 297 IAFVSNRGGSPQVYVMNADGTSVRRLTFQGNYNQTPDWSPRGDLIVFTA-----RDERNA 351
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
D+ +INV+ V RLT + +N P+ SP+G+ IVF STR G LY+M A+G
Sbjct: 352 FDLFTINVE----TGKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGNN 407
Query: 547 GYGLHRLTEGPWSDTMCNWSP 567
L R +G + +WSP
Sbjct: 408 QLPL-RAEKGVYQ--TPDWSP 425
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 118/260 (45%), Gaps = 40/260 (15%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P SP G ++AF + P +YV S G R V +T ++ G
Sbjct: 199 LPGLSPDGTQVAFTTYRKNRPDIYV-QSPGGEARAVISGGQMAT-------GAAFSPDGK 250
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
A +E + I+V +VDG S R LT T N P+ SPDGK I F S R G +
Sbjct: 251 RIAYSLAEGESAQIHVANVDG-SGNRALTDTPYGLNTSPTFSPDGKRIAFVSNRGGSPQV 309
Query: 538 YIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNG 595
Y+M+A+G + RLT +G ++ T +WSP G+ I F A D N +F+++ I+
Sbjct: 310 YVMNADG---TSVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN----AFDLFTINVET 361
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ +L Q G P FSP+G+ IVFTS G S +++ + DG
Sbjct: 362 GKVTRLTQD--QGSNEEPAFSPNGRLIVFTSTRNGGS--------------QLYVMTADG 405
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++ L TP W P
Sbjct: 406 NNQLPLRAEKGVYQTPDWSP 425
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG +A R T G N P +SPDG + F + R ++Y+ + GGE +
Sbjct: 180 VADWDGGNA--RALTKGGINILPGLSPDGTQVAFTTYRKNRPDIYVQ-SPGGEA---RAV 233
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613
G T +SPDG+ IA++ S ++++ + +G+G R L + G P
Sbjct: 234 ISGGQMATGAAFSPDGKRIAYSLAEGE----SAQIHVANVDGSGNRALTDT-PYGLNTSP 288
Query: 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
FSPDGK I F S+ GG +P +++ + DG+ ++RLT + TP W
Sbjct: 289 TFSPDGKRIAFVSNRGG-------SP-------QVYVMNADGTSVRRLTFQGNYNQTPDW 334
Query: 674 GPRFIRPVDVEEVKNEQCAFE 694
PR + V ++E+ AF+
Sbjct: 335 SPR--GDLIVFTARDERNAFD 353
>gi|410672132|ref|YP_006924503.1| WD40-like beta propeller protein [Methanolobus psychrophilus R15]
gi|409171260|gb|AFV25135.1| WD40-like beta propeller protein [Methanolobus psychrophilus R15]
Length = 357
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 57/249 (22%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE--FA 481
PS+SP G ++ + G++V+N+DGS +++Y A+S DP V+ G + +A
Sbjct: 51 PSWSPDGKKLTYAYNQGIWVMNADGSGTKKIYDTLAWSG--DP-----VFNHDGSKIYYA 103
Query: 482 SESS---EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ES IS++V + DG + V+ T ++ PSVSPD + I + S +G +++
Sbjct: 104 TESRTAYSARYISLHVMNADGSNNVK--LTGTSDSKEPSVSPDDRSIAYVSKISGNYDIW 161
Query: 539 IMDA-----------EGGEG------------YGLH--------------RLTEGPWSDT 561
IMD +G E Y L RLT+ +++
Sbjct: 162 IMDISSRKSVQVTDDKGDEASPSWSPDGTRLLYSLEGDIYTQEPDAVKATRLTDDEFNNI 221
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+SP G+ I F+SDRD GS++++++ +GTG++KL S R+ P +SP+G
Sbjct: 222 EPAYSPQGDMIVFSSDRD----GSYDLWIMRTDGTGMKKLTMEKSNERS--PAWSPEGSR 275
Query: 622 IVFTSDYGG 630
I + S+ GG
Sbjct: 276 IAYISNEGG 284
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 27/178 (15%)
Query: 420 DGSFPSFSPKGDRIAFV-EFPGVY-VVNSDGSNRRQVYFKN----AFSTVWDPVREAVVY 473
D PS SP IA+V + G Y + D S+R+ V + S W P ++Y
Sbjct: 135 DSKEPSVSPDDRSIAYVSKISGNYDIWIMDISSRKSVQVTDDKGDEASPSWSPDGTRLLY 194
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
+ G + E D V A R LT + NN P+ SP G IVF S R G
Sbjct: 195 SLEGDIYTQEP-------------DAVKATR-LTDDEFNNIEPAYSPQGDMIVFSSDRDG 240
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
+L+IM +G G+ +LT ++ WSP+G IA+ S+ G + ++++
Sbjct: 241 SYDLWIMRTDGT---GMKKLTMEKSNERSPAWSPEGSRIAYISNE----GGEYNLWVL 291
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 41/198 (20%)
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWS-DTMCNW 565
T+GK PS SPDGK + + + +++M+A+G G ++ + WS D + N
Sbjct: 43 TDGKGYNHPSWSPDGKKLTYAYN----QGIWVMNADGS---GTKKIYDTLAWSGDPVFN- 94
Query: 566 SPDGEWIAFASDRDNPGSGSF-EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
DG I +A++ S + +++++ +G+ KL + + P SPD +SI +
Sbjct: 95 -HDGSKIYYATESRTAYSARYISLHVMNADGSNNVKLTGTSDS---KEPSVSPDDRSIAY 150
Query: 625 TS----------------------DYGGISAEPISTPH----QYQPYGEIFKIKLDGSDL 658
S D G A P +P Y G+I+ + D
Sbjct: 151 VSKISGNYDIWIMDISSRKSVQVTDDKGDEASPSWSPDGTRLLYSLEGDIYTQEPDAVKA 210
Query: 659 KRLTQNSFEDGTPAWGPR 676
RLT + F + PA+ P+
Sbjct: 211 TRLTDDEFNNIEPAYSPQ 228
>gi|255262012|ref|ZP_05341354.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium
sp. R2A62]
gi|255104347|gb|EET47021.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium
sp. R2A62]
Length = 441
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP + +++ R+Q+ + AFS + V+Y+
Sbjct: 212 PRFSPNGDRVLYTSYETGFPRINILDVASVGRQQLATADGEMAFSPRFSRDGRQVIYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI D G +A RLT+ PS SPDG IVF S R+G +
Sbjct: 270 ----IANGGNTDIY--RSDLASGSNA--RLTSAPSIETAPSFSPDGSQIVFESDRSGTQQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ +AF +G F + ++ +G+
Sbjct: 322 LYIMSASGGEP---RRISFGDGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G P ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGADGAP-----------ALYSVDITGR 420
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LKR+ T N+ D P+WGP
Sbjct: 421 NLKRVTTSNAASD--PSWGP 438
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---------- 541
+ + D DG + V+ LT + P SP+G +++ S TG+ + I+D
Sbjct: 189 LAIMDYDGAN-VQFLTDSASIVLAPRFSPNGDRVLYTSYETGFPRINILDVASVGRQQLA 247
Query: 542 -----------------------AEGGE--------GYGLH-RLTEGPWSDTMCNWSPDG 569
A GG G + RLT P +T ++SPDG
Sbjct: 248 TADGEMAFSPRFSRDGRQVIYSIANGGNTDIYRSDLASGSNARLTSAPSIETAPSFSPDG 307
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ +G R++ S GR P +SP G + FT
Sbjct: 308 SQIVFESDR----SGTQQLYIMSASGGEPRRI--SFGDGRYGTPVWSPRGDLVAFTKQNA 361
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G I ++ DGS+ +RL SF D P W P
Sbjct: 362 G--------------RFHIGVMRTDGSE-ERLLTASFLDEGPTWSP 392
>gi|148262286|ref|YP_001228992.1| WD40 domain-containing protein [Geobacter uraniireducens Rf4]
gi|146395786|gb|ABQ24419.1| WD40 domain protein beta Propeller [Geobacter uraniireducens Rf4]
Length = 427
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 156/381 (40%), Gaps = 60/381 (15%)
Query: 318 PGLHAFTPATSPGNNKFIAVA-TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF 376
PG F P + G N + T S L+D+ + K + R+ S K L
Sbjct: 86 PGEFDFAPWQAAGANLLVKSGYTVSADSLTIEFRLYDVARGKELAAKRY-SGKRADLRKI 144
Query: 377 ISP--DSSRVGYHKCRGGSTRED-------GNNQLLLENIKSPLPDISLFRFDGSF---P 424
+ D + RG T + GN ++ L + ++ +GS P
Sbjct: 145 VHTFGDEIMLAVTGERGPFTGKTAFVSTATGNKEICLMDYDGY--NVQRLTKNGSINLNP 202
Query: 425 SFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDP-VREAVVYTSGGPE 479
FSP G + + + P +Y RR+++ P + ++ G +
Sbjct: 203 DFSPNGKELIYTSYKRRNPDLY--------RRELFSGTEARLSARPGINVTGAWSPDGSK 254
Query: 480 FA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
A S+ +I +I+ D + +LT N P+ SPDG I F S R G
Sbjct: 255 IALAMSKDGNSEIYTISKDG----KQLAKLTNNSAIEVSPAWSPDGSRIAFVSDRLGKPQ 310
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
++IM+A+G + RLT + WSP G+ IA+ G F++Y+I+ +G+
Sbjct: 311 VFIMNADGSN---VSRLTTSGTYNVSPRWSPKGDRIAYCRQH----GGGFQIYVINADGS 363
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+L GS HP +SPDG+ I F+S GG A I+ ++ DGS
Sbjct: 364 SDVQLTSEGSN---EHPRWSPDGRFITFSSTRGGKEA--------------IYVMRSDGS 406
Query: 657 DLKRLTQNSFEDGTPAWGPRF 677
R+++ D PAW PR+
Sbjct: 407 GQTRVSRGKGADSHPAWSPRW 427
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 47/278 (16%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
L+ + ++QR+T G P SP + I + +R ELF +
Sbjct: 181 LMDYDGYNVQRLTKNGSINLNPDFSPNGKELIYTSYKRRNPDLYRRELFSGTE------A 234
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFR 418
R + ++ SPD S++ + G++ +DG L N + ++S
Sbjct: 235 RLSARPGINVTGAWSPDGSKIALAMSKDGNSEIYTISKDGKQLAKLTN--NSAIEVS--- 289
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVV 472
P++SP G RIAFV P V+++N+DGSN ++ + S W P + +
Sbjct: 290 -----PAWSPDGSRIAFVSDRLGKPQVFIMNADGSNVSRLTTSGTYNVSPRWSPKGDRIA 344
Query: 473 YT---SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
Y GG I V + DG S V+ LT+ G +N P SPDG++I F S
Sbjct: 345 YCRQHGGG------------FQIYVINADGSSDVQ-LTSEG-SNEHPRWSPDGRFITFSS 390
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
TR G + +Y+M ++G G R++ G +D+ WSP
Sbjct: 391 TRGGKEAIYVMRSDGS---GQTRVSRGKGADSHPAWSP 425
>gi|254477250|ref|ZP_05090636.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp.
R11]
gi|214031493|gb|EEB72328.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp.
R11]
Length = 446
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P VVY+
Sbjct: 217 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSSDNGIMSFAPRFAPDGRTVVYSQ- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ DI +++++ A +RLT+ PS SPDG IVF S R+G
Sbjct: 276 -----AQGGNTDIYTLDINS----GARQRLTSAPSIETAPSYSPDGSQIVFESDRSGAPQ 326
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 327 LYVMPASGGEA---RRISFGAGRYGTPVWSPRGDLIAFTKQN----KGRFHIGVMRTDGS 379
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G + + ++ + + G
Sbjct: 380 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGENGRAL-----------LYSVDITGR 425
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D PAW P
Sbjct: 426 NLKPVRTPDGASD--PAWSP 443
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D +
Sbjct: 194 LAIMDYDGAN-VQYLTNSASIVLAPRFSPTGDRVLYTSYESGFPQIHVLDVGS-----VQ 247
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R + M ++PDG + ++ + G+ ++Y + N ++L + S
Sbjct: 248 RRVLSSDNGIMSFAPRFAPDGRTVVYSQAQ----GGNTDIYTLDINSGARQRLTSAPSIE 303
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
A P +SPDG IVF SD G +++ + G + +R++ +
Sbjct: 304 TA--PSYSPDGSQIVFESDRSGAP--------------QLYVMPASGGEARRISFGAGRY 347
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 348 GTPVWSPR 355
>gi|126725523|ref|ZP_01741365.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2150]
gi|126704727|gb|EBA03818.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2150]
Length = 444
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P +Y ++ +RR + + A FS + P + VV++
Sbjct: 215 PRFSPTGDRVLYTSYETGSPRIYALDVASVSRRVLDSQAATLSFSPRFAPDGDTVVFSR- 273
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S++ DI +++V A +RLT++ + PS SPDGK IVF S R+G +
Sbjct: 274 -----SQNGNSDIYTMSVRG----GAQKRLTSSPAIDTGPSYSPDGKQIVFESDRSGNQQ 324
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M A GGE R++ G WSP G++IAF G F + ++ +G+
Sbjct: 325 IYVMPAGGGE---PKRISFGAGRYGTPVWSPRGDYIAFTKQN----KGRFHIGVMRTDGS 377
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P ++P+G+ I+F + G + ++ + L G
Sbjct: 378 EERLLT---SSFLDEGPTWAPNGRVIMFMRETSGANGT-----------SSLYSVDLTGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LKR+ PAW P
Sbjct: 424 NLKRVP-TPLGASDPAWSP 441
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V+ LT + P SP G +++ S TG +Y +D +
Sbjct: 192 LAVMDYDGAN-VQYLTDSTSIVLGPRFSPTGDRVLYTSYETGSPRIYALDVAS-----VS 245
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R + T+ ++PDG+ + F+ ++ G+ ++Y + G ++L S +
Sbjct: 246 RRVLDSQAATLSFSPRFAPDGDTVVFSRSQN----GNSDIYTMSVRGGAQKRLTSSPAID 301
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P +SPDGK IVF SD G +I+ + G + KR++ +
Sbjct: 302 --TGPSYSPDGKQIVFESDRSGNQ--------------QIYVMPAGGGEPKRISFGAGRY 345
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 346 GTPVWSPR 353
>gi|162146628|ref|YP_001601087.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5]
gi|161785203|emb|CAP54749.1| protein tolB precursor [Gluconacetobacter diazotrophicus PAl 5]
Length = 462
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP D++AF+ + P VY++N + R+Q+ + +F+ + P AV+ +
Sbjct: 231 PRFSPTSDQLAFMSYANNRPRVYMLNL-ATGRQQLLGDFEGISFAPRFAPDGRAVILS-- 287
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
A+ + DI S+++ A R++T++G + P SPDG IVF S R G
Sbjct: 288 ----ATRGAGSDIYSVDLV----TRAKRQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQ 339
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GG+ R++ G WSP G+ IAF +GSF + ++ P+GT
Sbjct: 340 LYIMSAGGGDA---RRISYGNGVYGSPVWSPRGDLIAFT----RIANGSFSLGVMAPDGT 392
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF 624
G R + Q + P F P+G+ I F
Sbjct: 393 GERIMTQGFT---VESPTFCPNGRVIAF 417
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
++PDG + ++ R G+GS ++Y + R++ SG+ P +SPDG IVF
Sbjct: 277 FAPDGRAVILSATR---GAGS-DIYSVDLVTRAKRQITSSGAID--TSPCYSPDGSQIVF 330
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD GG +P +++ + G D +R++ + G+P W PR
Sbjct: 331 NSDRGG-------SP-------QLYIMSAGGGDARRISYGNGVYGSPVWSPR 368
>gi|257095752|ref|YP_003169393.1| translocation protein TolB [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257048276|gb|ACV37464.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 430
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 126/262 (48%), Gaps = 48/262 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYT 474
PS+SP G R+A+V F P VYV +S S +R V FK + S W P + AVV +
Sbjct: 204 PSWSPDGGRLAYVSFENKKPIVYV-HSLASGKRIVAANFKGSNSAPAWSPDGRKLAVVLS 262
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G I ++N D S V+RLTT N P+ SPDG+++ F S R G
Sbjct: 263 KDGGS--------QIFTVNADG----SGVQRLTTASAINTEPNFSPDGQYVYFTSDRGGS 310
Query: 535 KNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y + GG+ R++ EG ++ T SPDG+ +AF S RD GSF + ++
Sbjct: 311 PQIYRVGVGGGDA---QRVSFEGSYNVT-PRLSPDGKSMAFISRRD----GSFRLSVMDL 362
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
++ L S + P FSP+G+ I+ ++ GG G + + +
Sbjct: 363 ASKQVQVLTDS---HKDESPSFSPNGRMILIATEQGG--------------RGVLSAVSI 405
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG +RL+ ++ + PAW P
Sbjct: 406 DGRIKQRLSISAGDVREPAWSP 427
>gi|328542544|ref|YP_004302653.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1]
gi|326412290|gb|ADZ69353.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1]
Length = 449
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P V+++N + R V + F+ + P + V+ +
Sbjct: 221 PRFSPTSQEITYMSFGSGDPSVFLLNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I +++ A RLT + PS SPDG+ IVF S R G + L
Sbjct: 278 ---LQQGGNANIFVMDLRS----RATTRLTNTPAIDTSPSYSPDGRQIVFESDRGGSQQL 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G R++ GP + WSP G+ IAF G F + ++ P+G G
Sbjct: 331 YVMNADGSNA---QRISFGPGRYSTPVWSPRGDLIAFTKQH----QGRFMIGVMRPDGKG 383
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ +VF D G + P +I+ + L G
Sbjct: 384 ERILTE----GYHNEGPSWAPNGRVLVFFRDTPGANGGP-----------QIWTVDLTGY 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+T +F P+W P
Sbjct: 429 NEQRVTTPAFAS-DPSWSP 446
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + +R LT + P SP + I + S +G ++++++ E G+ +
Sbjct: 198 LAIMDQDGAN-MRYLTRGDELVLTPRFSPTSQEITYMSFGSGDPSVFLLNIETGQREIVG 256
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + + G+ ++++ +L + +
Sbjct: 257 NF---PGMTFAPRFSPDGQRVIMSLQQ----GGNANIFVMDLRSRATTRLTNTPAID--T 307
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG+ IVF SD GG +++ + DGS+ +R++ TP
Sbjct: 308 SPSYSPDGRQIVFESDRGGSQ--------------QLYVMNADGSNAQRISFGPGRYSTP 353
Query: 672 AWGPR 676
W PR
Sbjct: 354 VWSPR 358
>gi|209543380|ref|YP_002275609.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5]
gi|209531057|gb|ACI50994.1| Tol-Pal system beta propeller repeat protein TolB
[Gluconacetobacter diazotrophicus PAl 5]
Length = 462
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 28/208 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKN-AFSTVWDPVREAVVYTSG 476
P FSP D++AF+ + P VY++N + R+Q+ F+ +F+ + P AV+ +
Sbjct: 231 PRFSPTSDQLAFMSYANNRPRVYMLNL-ATGRQQLLGDFEGISFAPRFAPDGRAVILS-- 287
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
A+ + DI S+++ A R++T++G + P SPDG IVF S R G
Sbjct: 288 ----ATRGAGSDIYSVDLV----TRAKRQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQ 339
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GG+ R++ G WSP G+ IAF +GSF + ++ P+GT
Sbjct: 340 LYIMSAGGGDA---RRISYGNGVYGSPVWSPRGDLIAFT----RIANGSFSLGVMAPDGT 392
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF 624
G R + Q + P F P+G+ I F
Sbjct: 393 GERIMTQGFT---VESPTFCPNGRVIAF 417
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
++PDG + ++ R G+GS ++Y + R++ SG+ P +SPDG IVF
Sbjct: 277 FAPDGRAVILSATR---GAGS-DIYSVDLVTRAKRQITSSGAID--TSPCYSPDGSQIVF 330
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD GG +P +++ + G D +R++ + G+P W PR
Sbjct: 331 NSDRGG-------SP-------QLYIMSAGGGDARRISYGNGVYGSPVWSPR 368
>gi|320160892|ref|YP_004174116.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1]
gi|319994745|dbj|BAJ63516.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1]
Length = 287
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 32/213 (15%)
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P + + Y S + DI +N D + V+ LT ++ P+ SPD
Sbjct: 107 AWSPDGKYLAYAS------NREGTYDIWRMNSDGSNRVN----LTPGDGDDGLPAWSPDS 156
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+ IVF S R G +LYI GGE L ++T D M WSPDG+ IAF S RD
Sbjct: 157 QRIVFSSNRNGNYDLYIASVNGGE---LEQITSDEADDIMPAWSPDGKKIAFVSKRD--- 210
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
G+ E+YL G+ L ++ P + PDG I+F S+ ++
Sbjct: 211 -GNSEIYLYDIASKGVTNLTKNPYNDET--PAWYPDGSRILFVSE-------------RF 254
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ +K DGS+++RLT + ++ P W P
Sbjct: 255 DNQWDVYSMKPDGSEVRRLTHDELQEFHPMWRP 287
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 37/248 (14%)
Query: 447 DGSNRRQVYFKNA----FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502
D SN + + N F W P + +TS S +DI ++
Sbjct: 43 DTSNDKLLNLSNKSSDDFWQTWAPDGRYLAFTS------DRSGNLDIWILDTQK----EV 92
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
V T N ++ +P+ SPDGK++ + S R G +++ M+++G LT G D +
Sbjct: 93 VFNYTNNPEDEGWPAWSPDGKYLAYASNREGTYDIWRMNSDGSNRVN---LTPGDGDDGL 149
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPD + I F+S+R+ G++++Y+ NG L + I S A P +SPDGK I
Sbjct: 150 PAWSPDSQRIVFSSNRN----GNYDLYIASVNGGELEQ-ITSDEADDI-MPAWSPDGKKI 203
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVD 682
F S G S EI+ + + LT+N + D TPAW P R +
Sbjct: 204 AFVSKRDGNS--------------EIYLYDIASKGVTNLTKNPYNDETPAWYPDGSRILF 249
Query: 683 VEEVKNEQ 690
V E + Q
Sbjct: 250 VSERFDNQ 257
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 36/257 (14%)
Query: 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDE 277
DF +P G+Y A S ++ + ++ +L T + E+ GWP W +
Sbjct: 59 DFWQTWAPDGRYLAFTS--DRSGNLDIWILDTQKEVVFNYTNNP-----EDEGWPAWSPD 111
Query: 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337
+ + E Y + ++++ + +TP PA SP + + +
Sbjct: 112 GKYLAYASNRE----GTYDIW-----RMNSDGSNRVNLTPGDGDDGLPAWSPDSQRIVFS 162
Query: 338 ATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397
+ R + +L+ N EL + S + + P SPD ++ + ++ D
Sbjct: 163 SNRN-----GNYDLYIASVNGG-ELEQITSDEADDIMPAWSPDGKKIAF------VSKRD 210
Query: 398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFV--EFPG---VYVVNSDGSNR 451
GN+++ L +I S + +++ ++ P++ P G RI FV F VY + DGS
Sbjct: 211 GNSEIYLYDIASKGVTNLTKNPYNDETPAWYPDGSRILFVSERFDNQWDVYSMKPDGSEV 270
Query: 452 RQVYFK--NAFSTVWDP 466
R++ F +W P
Sbjct: 271 RRLTHDELQEFHPMWRP 287
>gi|84501652|ref|ZP_00999824.1| translocation protein TolB precursor [Oceanicola batsensis
HTCC2597]
gi|84390273|gb|EAQ02832.1| translocation protein TolB precursor [Oceanicola batsensis
HTCC2597]
Length = 443
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +YV++ RR + +F+ + P + VVY+
Sbjct: 214 PRFSPTGDRVLYTSYETGFPKIYVLDVASVGRRTLNTPEGTMSFAPRFHPDGQTVVYS-- 271
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ DI S++++ G S RLT PS SPDG IVF S R+G +
Sbjct: 272 ----LTQGGNTDIFSLDINS--GQST--RLTQAPSIETAPSFSPDGSQIVFESDRSGTQQ 323
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 324 LYIMPVGGGE---PTRISFGQGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRTDGS 376
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+FT + G Q ++ + + G
Sbjct: 377 EERLLTAS---FLDEGPTWAPNGRVIMFTRETQG-----------EQGSASLYSVDISGR 422
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LKR+ T+ + D P+W P
Sbjct: 423 NLKRVRTEGAASD--PSWSP 440
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 95/243 (39%), Gaps = 64/243 (26%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ + D DG + V+ LT + P SP G +++ S TG+ +Y++D
Sbjct: 191 LAIMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRVLYTSYETGFPKIYVLDVASVGRRTLN 249
Query: 543 --EGGEGYG--LH-----------------------------RLTEGPWSDTMCNWSPDG 569
EG + H RLT+ P +T ++SPDG
Sbjct: 250 TPEGTMSFAPRFHPDGQTVVYSLTQGGNTDIFSLDINSGQSTRLTQAPSIETAPSFSPDG 309
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y I P G G I G GR P +SP G I FT
Sbjct: 310 SQIVFESDR----SGTQQLY-IMPVGGGEPTRISFGQ-GRYGTPVWSPRGDLIAFT---- 359
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNE 689
Q + I ++ DGS+ +RL SF D P W P + E + E
Sbjct: 360 ----------KQSKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAPNGRVIMFTRETQGE 408
Query: 690 QCA 692
Q +
Sbjct: 409 QGS 411
>gi|74318224|ref|YP_315964.1| translocation protein TolB [Thiobacillus denitrificans ATCC 25259]
gi|119371065|sp|Q3SGT4.1|TOLB_THIDA RecName: Full=Protein TolB; Flags: Precursor
gi|74057719|gb|AAZ98159.1| probable tolB-related transport protein [Thiobacillus denitrificans
ATCC 25259]
Length = 427
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 137/309 (44%), Gaps = 61/309 (19%)
Query: 381 SSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
SSR+ Y + +G DG N + ++S P IS P FSP G R+A+
Sbjct: 166 SSRIAYVQKQGKRYELRVADADGQNPRTI--VRSLEPLIS--------PMFSPDGTRLAY 215
Query: 436 VEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEV 487
V F P VYV + RR+V FK + S W P + AVV T G
Sbjct: 216 VSFEDKKPVVYVQSLQQGGRRKVAAFKGSNSAPAWSPDGRQLAVVLTRDGAS-------- 267
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I INVD S + RL +G + P SPDG+ + F S R G +Y + GG+
Sbjct: 268 QIYLINVDG----SGLTRLMRSGDIDTEPVFSPDGQTLYFTSDRGGSPQIYRVAKSGGDA 323
Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
R++ EG + + SPDG ++A+ S RD G F + L R L ++
Sbjct: 324 ---KRVSFEGSY-NVSPTISPDGRYLAYIS-RDG---GRFRVVLQELASGQTRVLTET-- 373
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
R P F+P+G+++++ + GG G + + LDG RL+++
Sbjct: 374 -TRDEAPSFAPNGQAVLYATVQGG--------------RGVLGTVTLDGKTRARLSESGV 418
Query: 667 EDGTPAWGP 675
+ PAWGP
Sbjct: 419 DAREPAWGP 427
>gi|85706711|ref|ZP_01037803.1| translocation protein TolB precursor [Roseovarius sp. 217]
gi|85668769|gb|EAQ23638.1| translocation protein TolB precursor [Roseovarius sp. 217]
Length = 440
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +YV++ RR++ + +F+ + P VVY+
Sbjct: 211 PRFSPTGDRVLYTSYETGFPRIYVLDVANVGRRELPTLDGTMSFAPRFAPNGRTVVYS-- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ +++V G A RLTT PS +PDG IVF S R+G
Sbjct: 269 ----LTQGGNTDLYTMDV----GSGASTRLTTAPSIETAPSYNPDGSQIVFESDRSGTPQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 321 LYVMSAGGGEA---RRISFGEGRYGTPVWSPRGDLVAFTKQ----SKGRFHIGVMRTDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+FT + G Q ++ + + G
Sbjct: 374 EERLLTAS---FLDEGPTWAPNGRVIMFTRETQGA-----------QGQASLYSVDITGR 419
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK + N+ P+W P
Sbjct: 420 NLKAVPTNTGAS-DPSWSP 437
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 31/202 (15%)
Query: 480 FASESSEVDIIS--INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F +ES D + + + D DG + + LT + P SP G +++ S TG+ +
Sbjct: 174 FVAESGPKDQRAKRLAIMDYDGAN-TQYLTDSASIVLAPRFSPTGDRVLYTSYETGFPRI 232
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y++D + R TM ++P+G + ++ + G+ ++Y +
Sbjct: 233 YVLDVAN-----VGRRELPTLDGTMSFAPRFAPNGRTVVYSLTQ----GGNTDLYTMDVG 283
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+L + S A P ++PDG IVF SD G TP +++ +
Sbjct: 284 SGASTRLTTAPSIETA--PSYNPDGSQIVFESDRSG-------TP-------QLYVMSAG 327
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
G + +R++ GTP W PR
Sbjct: 328 GGEARRISFGEGRYGTPVWSPR 349
>gi|39995136|ref|NP_951087.1| biopolymer transport TolB-like protein [Geobacter sulfurreducens
PCA]
gi|409910610|ref|YP_006889075.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related [Geobacter sulfurreducens KN400]
gi|67461990|sp|Q74H67.1|TOLB_GEOSL RecName: Full=Protein TolB; Flags: Precursor
gi|39981898|gb|AAR33360.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter sulfurreducens PCA]
gi|298504166|gb|ADI82889.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related [Geobacter sulfurreducens KN400]
Length = 432
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGP 478
P FSP G +A+ + P ++ RR+++ A + + ++ G
Sbjct: 208 PDFSPNGRELAYTSYRRGNPDLF--------RREIFTGTEAVVSSHRGINVTGTWSPDGK 259
Query: 479 EFA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ A S +I +I+ D D RRLTT+ + P+ SPDGK I F S R G
Sbjct: 260 QLALAMSRDGNSEIYAISRDGRD----PRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKP 315
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++IM+A+G + + RLT + WSP G+ + + G F++Y I +G
Sbjct: 316 QVFIMNADGSD---VRRLTTSGAYNVSPRWSPKGDRLVYCRQ-----EGGFQIYSIATDG 367
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
TG +L GS HP +SPDG+ + F+S G A I+ ++ DG
Sbjct: 368 TGDTRLTSEGS---NEHPRWSPDGRFLTFSSTRDGGEA--------------IYVMRSDG 410
Query: 656 SDLKRLTQNSFEDGTPAWGPRF 677
S R+ ++ + P W PR+
Sbjct: 411 SGQTRVYRSKGKASHPTWSPRW 432
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 48/309 (15%)
Query: 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP 379
+ T P K V+T S + I L D + LT+ ++ +LNP SP
Sbjct: 159 MQTMTGERGPFTGKIAFVSTE---SGNKEIYLMDYDGHNVQRLTK---NRSINLNPDFSP 212
Query: 380 DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEF 438
+ + Y R GN L I + +S R ++SP G ++A
Sbjct: 213 NGRELAYTSYR------RGNPDLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMS 266
Query: 439 ----PGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTS---GGPEFASESSEVDI 489
+Y ++ DG + R++ A S W P + + + S G P+ +
Sbjct: 267 RDGNSEIYAISRDGRDPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQ---------V 317
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+N D D VRRLTT+G N P SP G +V+ G++ I +G G
Sbjct: 318 FIMNADGSD----VRRLTTSGAYNVSPRWSPKGDRLVYCRQEGGFQIYSIAT----DGTG 369
Query: 550 LHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RLT EG S+ WSPDG ++ F+S RD G +Y++ +G+G ++ + S G
Sbjct: 370 DTRLTSEG--SNEHPRWSPDGRFLTFSSTRD----GGEAIYVMRSDGSGQTRVYR--SKG 421
Query: 609 RANHPYFSP 617
+A+HP +SP
Sbjct: 422 KASHPTWSP 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 28/205 (13%)
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ A S+E I + D DG + V+RLT N N P SP+G+ + + S R G +L+
Sbjct: 172 KIAFVSTESGNKEIYLMDYDGHN-VQRLTKNRSINLNPDFSPNGRELAYTSYRRGNPDLF 230
Query: 539 IMDAEGGEGYGL--HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+ G + HR + WSPDG+ +A A RD G+ E+Y I +G
Sbjct: 231 RREIFTGTEAVVSSHRGI-----NVTGTWSPDGKQLALAMSRD----GNSEIYAISRDGR 281
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R+L + + P +SPDGK I F SD G +P ++F + DGS
Sbjct: 282 DPRRLTTHQAIDVS--PAWSPDGKRIAFVSDRLG------------KP--QVFIMNADGS 325
Query: 657 DLKRLTQNSFEDGTPAWGPRFIRPV 681
D++RLT + + +P W P+ R V
Sbjct: 326 DVRRLTTSGAYNVSPRWSPKGDRLV 350
>gi|381207848|ref|ZP_09914919.1| Tol-Pal system beta propeller repeat-containing protein TolB
[SAR324 cluster bacterium JCVI-SC AAA005]
Length = 420
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 125/266 (46%), Gaps = 44/266 (16%)
Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV-VYTSGGPEFA 481
P +SP ++ + G+ ++ N D +R TSGG +
Sbjct: 185 LPRWSPDSTKLIYTTV---------GNRGTTIWMHNVLKNKADELRRGEDGVTSGGTWYG 235
Query: 482 SESSEVDIISINVD----DVDGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ S V IS+N + D+D S +RLT + + P++SPD +VF S RTG +
Sbjct: 236 NGSRVVATISMNANVDLYDIDIESGRTQRLTRHSSIDTAPTLSPDNHNLVFVSDRTGREQ 295
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+ D E G ++RLT +S++ WSPDG I F+ + G +++L+ P G
Sbjct: 296 IYMRDMESGS---IYRLTFDGFSNSDPVWSPDGTRIVFSRSVN----GRNQIFLMDPFGD 348
Query: 597 GLRKLIQSGSAGR--ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
++L + GR + P +SPDG+ IVF +D GI +++ + +D
Sbjct: 349 DYQQL----TFGRFDSEKPTWSPDGRQIVFAADRTGIF--------------KLYVMFVD 390
Query: 655 GSDLKRLTQN--SFEDGTPAWGPRFI 678
G+ L+RLT FE+ +W R +
Sbjct: 391 GTGLRRLTSTPRGFEETGASWSRRAV 416
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 15/154 (9%)
Query: 305 VSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR 364
+ ES QR+T P SP N+ + V+ R + I + D+ LT
Sbjct: 255 IDIESGRTQRLTRHSSIDTAPTLSPDNHNLVFVSDR---TGREQIYMRDMESGSIYRLT- 310
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP 424
+ +P SPD +R+ + + G N L++ ++ RFD P
Sbjct: 311 --FDGFSNSDPVWSPDGTRIVFSRSVNGR-----NQIFLMDPFGDDYQQLTFGRFDSEKP 363
Query: 425 SFSPKGDRIAFVE----FPGVYVVNSDGSNRRQV 454
++SP G +I F +YV+ DG+ R++
Sbjct: 364 TWSPDGRQIVFAADRTGIFKLYVMFVDGTGLRRL 397
>gi|256393088|ref|YP_003114652.1| WD40 domain-containing protein beta Propeller [Catenulispora
acidiphila DSM 44928]
gi|256359314|gb|ACU72811.1| WD40 domain protein beta Propeller [Catenulispora acidiphila DSM
44928]
Length = 647
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 136/556 (24%), Positives = 214/556 (38%), Gaps = 88/556 (15%)
Query: 161 VNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVAD-- 218
+ G + P G L ++ST + W +E T LT G ++
Sbjct: 125 ITGSAVDDTGVPSPDGTKLAFMSTRSADHLAQI-WVKNLKSEALTNLTGTAALKGGSNSP 183
Query: 219 ---FSPAVSPSGKYTAVASYGNKGWDGE--------VEMLSTDIYIFLTRDGTQRVKIVE 267
F PA SP ++ A +S N W G + LS IYI + DGT ++
Sbjct: 184 DGHFRPAWSPDSQWIAFSSDRNTAWTGHGNGTGWEHTQELS--IYI-IKADGTGFRQVAT 240
Query: 268 NGGW----PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHA 322
G+ P W D + + +++ + ED W + G ++ S+ T A
Sbjct: 241 KPGYCLGSPSWSPDGTRIVYYQLTREDTWAAHRP---EDIGQCESQICSVNVAT----GA 293
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK---NKFIELTRFVSP---KTHHLNPF 376
T TS N + V+ R + E+ L+K N+ I P + +P
Sbjct: 294 TTQLTSTAN--VLKVSPRY----VNNTEVGYLIKGGPNEGIAYVNGTLPTVLRAGMRSPI 347
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
+PD + Y R + + + S D +RF FP S +G R+A
Sbjct: 348 WTPDGKSIIYDVPDADPVRT------IDQTLYSWDSDWD-YRFMDVFPVLSKQG-RLAIT 399
Query: 437 E------FPGVYVVNSDGSNRRQVY--------------FKNAFSTVWDPVREAVVYTSG 476
+ + + DG+++ VY AF W P + + + G
Sbjct: 400 QKQTGAAISSIVTMKPDGTDQVTVYNAASDGDPILEAEGLVGAFRPSWSPDGQWLAFGMG 459
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
G F ++ ++ D G+ A LT N FP SPDG +++R
Sbjct: 460 G-WFQMRATMTAVVYRVKSDGTGLEA---LTDGSTNAGFPCFSPDGTKLLYR-VWGAEDG 514
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
L I+D W D + +WS D I F + SF++ I+P+GT
Sbjct: 515 LRILDLAT-----RTTTALTDWPDNVPDWSDDNV-ILFTR---KTSATSFDICTINPDGT 565
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKS-IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL++L SG ANH + +G I++ S G E +QPYG+IF + DG
Sbjct: 566 GLKQLTVSG----ANHAHAVWNGTGRILYNSGDAGFREEAALYDDTFQPYGQIFSMNADG 621
Query: 656 SDLKRLTQNSFEDGTP 671
SD LT + +ED P
Sbjct: 622 SDNTMLTDSQWEDSMP 637
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 31/230 (13%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEG-GEG 547
++ + D+DG + RRL N + S++ DGK I F + R G N +Y G G+G
Sbjct: 60 TLYIADIDGKNE-RRLLQNSAFDRHASITADGKTIYFTTERAGDGNSSIYWASLNGSGQG 118
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL-----I 602
G+ G D SPDG +AF S R ++++ + L L +
Sbjct: 119 VGVQPSITGSAVDDTGVPSPDGTKLAFMSTRS--ADHLAQIWVKNLKSEALTNLTGTAAL 176
Query: 603 QSGSAGRANH--PYFSPDGKSIVFTSDYG-GISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
+ GS H P +SPD + I F+SD + T ++ I+ IK DG+ +
Sbjct: 177 KGGSNSPDGHFRPAWSPDSQWIAFSSDRNTAWTGHGNGTGWEHTQELSIYIIKADGTGFR 236
Query: 660 RL-TQNSFEDGTPAWGP---RFI-------------RPVDVEEVKNEQCA 692
++ T+ + G+P+W P R + RP D+ + +++ C+
Sbjct: 237 QVATKPGYCLGSPSWSPDGTRIVYYQLTREDTWAAHRPEDIGQCESQICS 286
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 52/218 (23%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP-EFASESSEVDIISINVDDVDG 499
+Y+ + DG N R++ +AF R A + G F +E + DG
Sbjct: 61 LYIADIDGKNERRLLQNSAFD------RHASITADGKTIYFTTERAG-----------DG 103
Query: 500 VSAVRRLTTNGKNNAF---PSV-----------SPDGKWIVFRSTRTG-------YKNLY 538
S++ + NG PS+ SPDG + F STR+ KNL
Sbjct: 104 NSSIYWASLNGSGQGVGVQPSITGSAVDDTGVPSPDGTKLAFMSTRSADHLAQIWVKNLK 163
Query: 539 IMDAEGGEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG-----------SF 586
G L + P WSPD +WIAF+SDR+ +G
Sbjct: 164 SEALTNLTGTAALKGGSNSPDGHFRPAWSPDSQWIAFSSDRNTAWTGHGNGTGWEHTQEL 223
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+Y+I +GTG R+ + + P +SPDG IV+
Sbjct: 224 SIYIIKADGTGFRQ-VATKPGYCLGSPSWSPDGTRIVY 260
>gi|119356690|ref|YP_911334.1| WD40 domain-containing protein [Chlorobium phaeobacteroides DSM
266]
gi|119354039|gb|ABL64910.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides DSM
266]
Length = 442
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 117/255 (45%), Gaps = 38/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P +SP G +AF ++ P +++ S + V KN S DP G E
Sbjct: 217 PGYSPDGRYLAFTDYTTGRPALHI-RSLSDRKDTVLEKNGVSI--DPGWR------NGRE 267
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A+ S + + VDG + RRLTT+ + P+ SPDG + F S+R G ++I
Sbjct: 268 LATTLSYEGDQELYLCKVDG-TVSRRLTTSKGIDLSPTFSPDGSRMAFVSSRNGLPQIFI 326
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
MD G RLT +T +WSP G+ IA+++ SG ++ I+ +GTGL+
Sbjct: 327 MDVSSGL---TRRLTYSGRYNTQPSWSPGGDKIAYSTWEK---SGEINIFTINADGTGLK 380
Query: 600 KLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
KL S R N P +SPDG IVF S+ Q ++F + G +
Sbjct: 381 KLT---SGSRENEAPSWSPDGSMIVFASN--------------RQGNKKLFVMGSGGENQ 423
Query: 659 KRLTQNSFEDGTPAW 673
KRL Q E P+W
Sbjct: 424 KRLLQMDGEQMQPSW 438
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 84/223 (37%), Gaps = 74/223 (33%)
Query: 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA------ 575
G IVF S +TG+K +Y D G + +LT +SPDG ++AF
Sbjct: 179 GSKIVFVSNKTGFKEIYQCDFNG---QNIEQLTSTKSISLTPGYSPDGRYLAFTDYTTGR 235
Query: 576 --------SDRDN-----------PG-------------SGSFEMYLIHPNGTGLRKLIQ 603
SDR + PG G E+YL +GT R+L
Sbjct: 236 PALHIRSLSDRKDTVLEKNGVSIDPGWRNGRELATTLSYEGDQELYLCKVDGTVSRRLTT 295
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGI----------------------SAEPISTP-- 639
S G P FSPDG + F S G+ + +P +P
Sbjct: 296 S--KGIDLSPTFSPDGSRMAFVSSRNGLPQIFIMDVSSGLTRRLTYSGRYNTQPSWSPGG 353
Query: 640 -----HQYQPYGEI--FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ GEI F I DG+ LK+LT S E+ P+W P
Sbjct: 354 DKIAYSTWEKSGEINIFTINADGTGLKKLTSGSRENEAPSWSP 396
>gi|298676136|ref|YP_003727885.1| APHP domain-containing protein [Methanohalobium evestigatum Z-7303]
gi|298289124|gb|ADI75089.1| APHP domain protein [Methanohalobium evestigatum Z-7303]
Length = 1914
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 138/286 (48%), Gaps = 57/286 (19%)
Query: 405 ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFK-N 458
E++ + LP+I P +SP G++I + + + V+++NSDGS++ +
Sbjct: 535 ESVLTNLPNIE------GHPRWSPDGNKILYKKDNTNGWYNVWIMNSDGSSQTALTNDAQ 588
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEV--DIISINVDDVDGVSAVRRLTTNGKNNAFP 516
+ VW P +VY S++S++ D+I +N D G + LT N F
Sbjct: 589 SECAVWSPSGSKIVYKH------SDNSDLPEDVIIMNPD---GSNKETILTGQKYANRF- 638
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMCNWSPDG 569
S SPDG I S G + + I++A+G GL +++G PW + WSPDG
Sbjct: 639 SWSPDGSKIAV-SGHIGNQGIRIINADGS---GLTEISQGYFRPQTQPWQSQI--WSPDG 692
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I + SD + G+ ++Y I+ +GT +L + ++ + +FSPDG IVF S+
Sbjct: 693 SKIVYHSDEN----GNRDIYTINIDGTDRTQL--TTNSAKDTDSFFSPDGSKIVFVSNRE 746
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +I+ + +DGS+ +LT NS +D P W P
Sbjct: 747 G--------------NNDIWMMNVDGSNKTQLTVNSADDMYPTWNP 778
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 425 SFSPKGDRIAF---VEFPGVYVVNSDGSNRRQV---YFKNAF----STVWDPVREAVVYT 474
S+SP G +IA + G+ ++N+DGS ++ YF+ S +W P +VY
Sbjct: 639 SWSPDGSKIAVSGHIGNQGIRIINADGSGLTEISQGYFRPQTQPWQSQIWSPDGSKIVYH 698
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S E+ DI +IN+D D +LTTN + SPDG IVF S R G
Sbjct: 699 S------DENGNRDIYTINIDGTDRT----QLTTNSAKDTDSFFSPDGSKIVFVSNREGN 748
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
++++M+ +G +LT D W+PDG IAF+S+R +G+++++LI
Sbjct: 749 NDIWMMNVDGSNK---TQLTVNSADDMYPTWNPDGTKIAFSSNR----AGNYDIWLIE 799
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 48/274 (17%)
Query: 375 PFISPDSSRVGYHKCRGGS------TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
P SPD +++ Y K DG++Q L N +SP
Sbjct: 548 PRWSPDGNKILYKKDNTNGWYNVWIMNSDGSSQTALTN-----------DAQSECAVWSP 596
Query: 429 KGDRIAF-----VEFP-GVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGP 478
G +I + + P V ++N DGSN+ + + N FS W P +
Sbjct: 597 SGSKIVYKHSDNSDLPEDVIIMNPDGSNKETILTGQKYANRFS--WSPDGSKIA------ 648
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV--SPDGKWIVFRSTRTGYKN 536
+ I IN D G++ + + + + S SPDG IV+ S G ++
Sbjct: 649 -VSGHIGNQGIRIINADG-SGLTEISQGYFRPQTQPWQSQIWSPDGSKIVYHSDENGNRD 706
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y ++ +G + +LT DT +SPDG I F S+R+ G+ ++++++ +G+
Sbjct: 707 IYTINIDGTD---RTQLTTNSAKDTDSFFSPDGSKIVFVSNRE----GNNDIWMMNVDGS 759
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+L + + +P ++PDG I F+S+ G
Sbjct: 760 NKTQLTVNSADDM--YPTWNPDGTKIAFSSNRAG 791
>gi|399017583|ref|ZP_10719774.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. CF444]
gi|398103181|gb|EJL93354.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. CF444]
Length = 433
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 132/306 (43%), Gaps = 55/306 (17%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + + + ++S P IS PS+SP G ++A+V
Sbjct: 169 STRIAYVTRSGKEYRLEVADADGEGVQVALRSNEPIIS--------PSWSPDGGKVAYVS 220
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDI 489
F P +Y+ N R V FK + S W P R AV T G +
Sbjct: 221 FEAKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGSRLAVALTRDG-----------L 269
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + + DG S +RRLT + P SPDG ++ F S R+G +Y + GGE
Sbjct: 270 TQVYIINADG-SGLRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYKVSPNGGEA-- 326
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R+T G + SPDG+ +AF S R+ G F++Y + ++L +
Sbjct: 327 -QRVTFGGSYNISPRISPDGKTLAFISRRE----GKFQLYALDLTNGQEQRL---SDTVK 378
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P FSP+GK I++ ++ G G + + +DG +RLT +
Sbjct: 379 DESPSFSPNGKYIMYATESG--------------RRGSLAIVSVDGRIKQRLTTQVGDIR 424
Query: 670 TPAWGP 675
P WGP
Sbjct: 425 EPTWGP 430
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 33/221 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
++P SPD +V Y E + ++N+ + ++ F+ S P+++P G
Sbjct: 205 ISPSWSPDGGKVAYVSF------EAKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGS 258
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A VY++N+DGS R++ T + P V +TS GGP+
Sbjct: 259 RLAVALTRDGLTQVYIINADGSGLRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYK 318
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S +G A +R+T G N P +SPDGK + F S R G LY +D
Sbjct: 319 VSP------------NGGEA-QRVTFGGSYNISPRISPDGKTLAFISRREGKFQLYALDL 365
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
G+ RL++ D ++SP+G++I +A++ GS
Sbjct: 366 TNGQE---QRLSD-TVKDESPSFSPNGKYIMYATESGRRGS 402
>gi|237746665|ref|ZP_04577145.1| TolB protein [Oxalobacter formigenes HOxBLS]
gi|229378016|gb|EEO28107.1| TolB protein [Oxalobacter formigenes HOxBLS]
Length = 429
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 143/352 (40%), Gaps = 71/352 (20%)
Query: 350 ELFDLVKNKFIELTRFVSPK-----THH---------LNPFISPDSSRVGYHKCRGGSTR 395
LFDL K + V+P T H L ++R+ Y G R
Sbjct: 120 RLFDLGKASQLSALSMVAPAPMTRVTAHKIADDIYEKLTGIKGMFATRIAYVVKAGNEYR 179
Query: 396 -----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNS 446
DG + L ++S P IS PS+SP G ++A+V F P VYV N
Sbjct: 180 LEIADSDGEGRQLA--LRSKEPIIS--------PSWSPDGTKVAYVSFEAKKPVVYVQNL 229
Query: 447 DGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504
R V Y N + W P G + A S+ I + +G S +R
Sbjct: 230 VTRARTVVANYKGNNSAPSWSP---------DGTKLAVALSKNGYTQIYTVNANGGS-LR 279
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
+LT N P S DGKWI F S R+G +Y + GG R+T G +
Sbjct: 280 QLTQTRSINTEPQFSADGKWIYFTSDRSGGPQIYKIGVNGGNA---QRVTFGSNYNISPR 336
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
SPDG+ +A+ S R+ G F++YL+ NG +R R P FSP+G+ I+
Sbjct: 337 VSPDGKSLAYISRRN----GGFQLYLMDLENGQEMRL----SDTARDESPSFSPNGQFIM 388
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + G G + + +DG +RLT + + P+WGP
Sbjct: 389 YATGSG--------------RRGVLSVVSVDGRVRQRLTMKAADVREPSWGP 426
>gi|384085957|ref|ZP_09997132.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 422
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 34/253 (13%)
Query: 424 PSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
P +SP R+A+V + + V + +RQ + A ++ G E
Sbjct: 199 PVWSPNNHRLAYVTYANARAIIYVQDLATGKRQSIAPGG------EIVSAPAFSPNGQEI 252
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
A S + V ++ R+LT + N P+ SP+G IVF S R G +Y M
Sbjct: 253 AYARSSGGHTELYVANLQ-TGQRRQLTNDDAINTSPTWSPNGSQIVFVSDRAGGPQIYAM 311
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+A GG +HRLT + +SP G IAF D G + + ++ PNG+GLR
Sbjct: 312 NANGGN---IHRLTYSGGYNAGPEYSPTGNAIAFIHRTD----GVYALAVMDPNGSGLRV 364
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
L + G +HP F+ +G+ I++ + GG + ++ LDG +
Sbjct: 365 L---DAQGNCDHPSFAGNGQMILYGTHRGGRKV--------------LAEVSLDGKTMAI 407
Query: 661 LTQNSFEDGTPAW 673
L + +D PAW
Sbjct: 408 LHSDVGQDSQPAW 420
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 44/243 (18%)
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN-PFISPDS 381
F+P SP N++ V +Y + V++ + ++P ++ P SP+
Sbjct: 197 FSPVWSPNNHRLAYV-------TYANARAIIYVQDLATGKRQSIAPGGEIVSAPAFSPNG 249
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG--SFPSFSPKGDRIAFVE-- 437
+ Y + GG T +L + N+++ L D + P++SP G +I FV
Sbjct: 250 QEIAYARSSGGHT------ELYVANLQTGQRR-QLTNDDAINTSPTWSPNGSQIVFVSDR 302
Query: 438 --FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII----- 490
P +Y +N++G N ++ + ++ GPE++ + + I
Sbjct: 303 AGGPQIYAMNANGGNIHRLTYSGGYNA--------------GPEYSPTGNAIAFIHRTDG 348
Query: 491 --SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
++ V D +G S +R L G N PS + +G+ I++ + R G K L + +G
Sbjct: 349 VYALAVMDPNG-SGLRVLDAQG-NCDHPSFAGNGQMILYGTHRGGRKVLAEVSLDGKTMA 406
Query: 549 GLH 551
LH
Sbjct: 407 ILH 409
>gi|110679376|ref|YP_682383.1| translocation protein TolB [Roseobacter denitrificans OCh 114]
gi|118574597|sp|Q167Z6.1|TOLB_ROSDO RecName: Full=Protein TolB; Flags: Precursor
gi|109455492|gb|ABG31697.1| TolB protein, putative [Roseobacter denitrificans OCh 114]
Length = 443
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP G RI + FP +YV++ RR + + +F+ + P + +V++
Sbjct: 214 PRFSPDGQRILYTSYETGFPRIYVLDVTSLQRRGLESQEGTMSFAPRFAPDGQTIVFS-- 271
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI +NV+ G SA R LT+ PS SPDG IVF S R+G +
Sbjct: 272 ----LSQGGNTDIYRMNVN---GGSATR-LTSAPSIETAPSYSPDGTQIVFESDRSGSQQ 323
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ GP WSP G+ +AF +G F + ++ +G+
Sbjct: 324 LYVMPANGGEA---RRISFGPGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRLDGS 376
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+F+ + G Q ++ + + G
Sbjct: 377 EERLLTAS---FLDEGPTWSPNGRVIMFSRETQGA-----------QGRATLYSVDITGR 422
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+ + + E G+ P+W P
Sbjct: 423 NLRPV--RTPEGGSDPSWSP 440
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SPDG+ I++ S TG+ +Y++D + GL
Sbjct: 191 LAIMDYDGAN-VKYLTDSSSIVLAPRFSPDGQRILYTSYETGFPRIYVLDVTSLQRRGLE 249
Query: 552 ------------------------------------------RLTEGPWSDTMCNWSPDG 569
RLT P +T ++SPDG
Sbjct: 250 SQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLTSAPSIETAPSYSPDG 309
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SGS ++Y++ NG R++ S GR P +SP G + FT
Sbjct: 310 TQIVFESDR----SGSQQLYVMPANGGEARRI--SFGPGRYGTPVWSPRGDLVAFTKQNA 363
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G I ++LDGS+ +RL SF D P W P
Sbjct: 364 G--------------RFHIGVMRLDGSE-ERLLTASFLDEGPTWSP 394
>gi|148656049|ref|YP_001276254.1| WD40 domain-containing protein [Roseiflexus sp. RS-1]
gi|148568159|gb|ABQ90304.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1]
Length = 567
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 19/166 (11%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGG 477
PS+SP GDRI F +YV+ +DGS+ R++ A+ W P + +TS
Sbjct: 69 PSWSPAGDRIVFASRRASNWDLYVMRADGSDLRRLTEHPAYDGEPAWSPDGRQIAFTS-- 126
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
++DI ++++D D +RR+T++ ++ P+ +PDG+ + F S R + +
Sbjct: 127 ----MRDGQLDIYTLDLDSGD----LRRITSHPSADSQPTWAPDGRRLAFTSWRDSNQEI 178
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
YI D EG + LT P D WSPDG +IAF SDRD G+
Sbjct: 179 YITDVEGST---IVNLTNHPAPDHSPAWSPDGRFIAFISDRDGGGN 221
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
FA+ + I D+ G V LT + + PS SP G IVF S R +LY+
Sbjct: 34 FAASRGDGGAFDIFSADLAGERVVN-LTADPHPDRSPSWSPAGDRIVFASRRASNWDLYV 92
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M A+G + L RLTE P D WSPDG IAF S RD G ++Y + + LR
Sbjct: 93 MRADGSD---LRRLTEHPAYDGEPAWSPDGRQIAFTSMRD----GQLDIYTLDLDSGDLR 145
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
++ SA + P ++PDG+ + FTS EI+ ++GS +
Sbjct: 146 RITSHPSAD--SQPTWAPDGRRLAFTS--------------WRDSNQEIYITDVEGSTIV 189
Query: 660 RLTQNSFEDGTPAWGP--RFI 678
LT + D +PAW P RFI
Sbjct: 190 NLTNHPAPDHSPAWSPDGRFI 210
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
S W P + +V+ S +S D+ + D D +RRLT + + P+ SP
Sbjct: 68 SPSWSPAGDRIVFAS------RRASNWDLYVMRADGSD----LRRLTEHPAYDGEPAWSP 117
Query: 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
DG+ I F S R G ++Y +D + G+ L R+T P +D+ W+PDG +AF S RD+
Sbjct: 118 DGRQIAFTSMRDGQLDIYTLDLDSGD---LRRITSHPSADSQPTWAPDGRRLAFTSWRDS 174
Query: 581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ E+Y+ G+ + L + + P +SPDG+ I F SD G
Sbjct: 175 ----NQEIYITDVEGSTIVNLTNHPAPD--HSPAWSPDGRFIAFISDRDG 218
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
IVF ++R I A+ G + LT P D +WSP G+ I FAS R +
Sbjct: 32 IVFAASRGDGGAFDIFSADLA-GERVVNLTADPHPDRSPSWSPAGDRIVFASRR----AS 86
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
++++Y++ +G+ LR+L + + P +SPDG+ I FTS G
Sbjct: 87 NWDLYVMRADGSDLRRLTEHPAYD--GEPAWSPDGRQIAFTSMRDGQL------------ 132
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+I+ + LD DL+R+T + D P W P
Sbjct: 133 --DIYTLDLDSGDLRRITSHPSADSQPTWAP 161
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 38/243 (15%)
Query: 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
+ P +HA A G + + A+R ++ I DL + + LT P +
Sbjct: 16 IVPAKVHA---AQQDGQGRIVFAASRGDGGAF-DIFSADLAGERVVNLTADPHPDR---S 68
Query: 375 PFISPDSSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK 429
P SP R+ + R + R DG++ L + +DG P++SP
Sbjct: 69 PSWSPAGDRIVFASRRASNWDLYVMRADGSDLRRLTEHPA---------YDGE-PAWSPD 118
Query: 430 GDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASE 483
G +IAF +Y ++ D + R++ + + W P + +TS +
Sbjct: 119 GRQIAFTSMRDGQLDIYTLDLDSGDLRRITSHPSADSQPTWAPDGRRLAFTS----WRDS 174
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ E I + DV+G S + LT + + P+ SPDG++I F S R G NL+I D
Sbjct: 175 NQE-----IYITDVEG-STIVNLTNHPAPDHSPAWSPDGRFIAFISDRDGGGNLHIADLV 228
Query: 544 GGE 546
GE
Sbjct: 229 TGE 231
>gi|338737859|ref|YP_004674821.1| protein tolB [Hyphomicrobium sp. MC1]
gi|337758422|emb|CCB64247.1| protein tolB precursor [Hyphomicrobium sp. MC1]
Length = 448
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 41/261 (15%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P V+++N + R V + F+ + P + V+ + G
Sbjct: 217 PRFSPTNQEITYMAYMADGQPKVFIMNLETGQRELVGDFPNMTFAPRFSPDGQRVIMSLG 276
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
P+ S+ E+D+ S RRLT + + PS SPDG IVF S R G +
Sbjct: 277 RPDGGSDIYEMDLRS---------RQPRRLTQSNGIDTSPSYSPDGSQIVFESDRGGRQQ 327
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
L++M+++G H ++ G + + WSP G++IAF G F + ++ P+G+
Sbjct: 328 LWVMNSDGSN---QHPISGGDGTYSTPVWSPRGDYIAFTKQ----AGGQFIIGVMKPDGS 380
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDY-GGISAEPISTPHQYQPYGEIFKIKLD 654
G R+L ++G N P ++P+G+ ++F D G S P I+ + +
Sbjct: 381 GERQL----TSGFHNEGPTWAPNGRVLMFFRDVSNGESGGP-----------RIYSVDIT 425
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + + + SF PAW P
Sbjct: 426 GYNEREVKTPSFAS-DPAWSP 445
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS-TRTGYKNLYIMDAEG 544
E I + + D DG + VR LT + P SP + I + + G ++IM+ E
Sbjct: 188 ERRIKRLAIMDQDGAN-VRLLTQGNELVLTPRFSPTNQEITYMAYMADGQPKVFIMNLET 246
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G+ + + P +SPDG+ + + R + GS +EM L R+L QS
Sbjct: 247 GQ---RELVGDFPNMTFAPRFSPDGQRVIMSLGRPDGGSDIYEMDL---RSRQPRRLTQS 300
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G P +SPDG IVF SD GG +++ + DGS+ ++
Sbjct: 301 N--GIDTSPSYSPDGSQIVFESDRGGRQ--------------QLWVMNSDGSNQHPISGG 344
Query: 665 SFEDGTPAWGPR 676
TP W PR
Sbjct: 345 DGTYSTPVWSPR 356
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
F P SP + I ++ RP E+ DL + LT+ T +P SPD S
Sbjct: 260 FAPRFSPDGQRVI-MSLGRPDGGSDIYEM-DLRSRQPRRLTQSNGIDT---SPSYSPDGS 314
Query: 383 RVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAF 435
++ + RGG + DG+NQ + DG++ P +SP+GD IAF
Sbjct: 315 QIVFESDRGGRQQLWVMNSDGSNQHPISG------------GDGTYSTPVWSPRGDYIAF 362
Query: 436 VEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-------TSGGPEFAS 482
+ G + V+ DGS RQ+ F N T W P +++ SGGP S
Sbjct: 363 TKQAGGQFIIGVMKPDGSGERQLTSGFHNEGPT-WAPNGRVLMFFRDVSNGESGGPRIYS 421
Query: 483 ESSEVDIISINVDDV 497
VDI N +V
Sbjct: 422 ----VDITGYNEREV 432
>gi|254486268|ref|ZP_05099473.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp.
GAI101]
gi|214043137|gb|EEB83775.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp.
GAI101]
Length = 430
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDRI + FP +YV++ RR + + +F+ + P + VVY+
Sbjct: 201 PRFSPTGDRILYTSYESGFPRIYVLDIGSVQRRVLESADGTMSFAPRFSPSGQTVVYS-- 258
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ DI +++++ V RLT PS SPDG IVF S R+G +
Sbjct: 259 ----LTQGGNTDIYTMDINTGQSV----RLTNTPAIETAPSYSPDGSRIVFESDRSGTQQ 310
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 311 LYIMPASGGEA---QRISFGEGRYGTPVWSPRGDLVAFTKQN----KGRFHIGVMRLDGS 363
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+F + G ++ + + G
Sbjct: 364 EERLLTAS---FLDEGPTWAPNGRVIMFARETQGAGGSS-----------SLYSVDISGR 409
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + TQ D P+W P
Sbjct: 410 NLKPVRTQEGGSD--PSWSP 427
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------E 543
+ V D DG + VR LT + P SP G I++ S +G+ +Y++D E
Sbjct: 178 LAVMDYDGAN-VRYLTDSTSIVLAPRFSPTGDRILYTSYESGFPRIYVLDIGSVQRRVLE 236
Query: 544 GGEG----------------YGLH------------------RLTEGPWSDTMCNWSPDG 569
+G Y L RLT P +T ++SPDG
Sbjct: 237 SADGTMSFAPRFSPSGQTVVYSLTQGGNTDIYTMDINTGQSVRLTNTPAIETAPSYSPDG 296
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ +G +++ S GR P +SP G + FT
Sbjct: 297 SRIVFESDR----SGTQQLYIMPASGGEAQRI--SFGEGRYGTPVWSPRGDLVAFT---- 346
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++LDGS+ +RL SF D P W P
Sbjct: 347 ----------KQNKGRFHIGVMRLDGSE-ERLLTASFLDEGPTWAP 381
>gi|338536875|ref|YP_004670209.1| tolB protein [Myxococcus fulvus HW-1]
gi|337262971|gb|AEI69131.1| tolB protein [Myxococcus fulvus HW-1]
Length = 428
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 29/179 (16%)
Query: 377 ISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD R+ Y G S + DG+ L + L + P++SP G
Sbjct: 245 FSPDGKRIAYSLAEGESAQVYVANADGSGARALTDTPYGL---------NTSPTWSPDGK 295
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
RIAFV P VYV+N+DGS+ R++ F+ ++ W P + +V+T+ E +
Sbjct: 296 RIAFVSNRGGSPQVYVMNADGSSVRRLTFQGNYNQTPDWSPRGDLIVFTA-----RDERN 350
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
D+ +INV+ V RLT + +N P+ SP+G+ IVF STR G LY+M A+G
Sbjct: 351 AFDLFTINVE----TGKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSRLYVMTADG 405
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ SP G ++AF + P +YV + G + V +T ++ G
Sbjct: 199 LPALSPDGAQVAFTTYRKNRPDIYV-QAPGGAAKAVISGGQMAT-------GASFSPDGK 250
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A +E + + V + DG A T N P+ SPDGK I F S R G +Y
Sbjct: 251 RIAYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVY 310
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
+M+A+G + RLT +G ++ T +WSP G+ I F A D N +F+++ I+
Sbjct: 311 VMNADGSS---VRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN----AFDLFTINVETG 362
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q G P FSP+G+ IVFTS G S ++ + DG+
Sbjct: 363 KVTRLTQ--DQGSNEEPAFSPNGRLIVFTSTRNGGS--------------RLYVMTADGN 406
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 407 NQLPLRAEKGVYQTPDWAP 425
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG +A R T G N P++SPDG + F + R ++Y+ A GG +
Sbjct: 180 VADWDGGNA--RALTKGGINILPALSPDGAQVAFTTYRKNRPDIYVQ-APGGAA---KAV 233
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613
G T ++SPDG+ IA++ S ++Y+ + +G+G R L + G P
Sbjct: 234 ISGGQMATGASFSPDGKRIAYSLAEGE----SAQVYVANADGSGARALTDT-PYGLNTSP 288
Query: 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+SPDGK I F S+ GG +P +++ + DGS ++RLT + TP W
Sbjct: 289 TWSPDGKRIAFVSNRGG-------SP-------QVYVMNADGSSVRRLTFQGNYNQTPDW 334
Query: 674 GPRFIRPVDVEEVKNEQCAFE 694
PR + V ++E+ AF+
Sbjct: 335 SPR--GDLIVFTARDERNAFD 353
>gi|339502785|ref|YP_004690205.1| protein TolB [Roseobacter litoralis Och 149]
gi|338756778|gb|AEI93242.1| protein TolB precursor [Roseobacter litoralis Och 149]
Length = 443
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP G R+ + FP +YV++ RR + + +F+ + P E +V++
Sbjct: 214 PRFSPDGQRVLYTSYETGFPRIYVLDVTSVQRRALESQEGTMSFAPRFAPDGETIVFS-- 271
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI +NV+ RLT PS SPDG IVF S R+G +
Sbjct: 272 ----LSQGGNTDIYRMNVNG----GPATRLTAAPSIETAPSYSPDGTQIVFESDRSGSQQ 323
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ GP WSP G+ +AF +G F + ++ +G+
Sbjct: 324 LYVMPASGGEA---RRISFGPGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRLDGS 376
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+F+ + G Q ++ + + G
Sbjct: 377 EERLLTAS---FLDEGPTWSPNGRVIMFSRETQGA-----------QGRATLYSVDITGR 422
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+ + + E G+ P+W P
Sbjct: 423 NLRPV--RTPEGGSDPSWSP 440
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---------- 541
+ + D DG + V+ LT + P SPDG+ +++ S TG+ +Y++D
Sbjct: 191 LAIMDYDGAN-VKYLTDSSSIVLAPRFSPDGQRVLYTSYETGFPRIYVLDVTSVQRRALE 249
Query: 542 -----------------------AEGG---------EGYGLHRLTEGPWSDTMCNWSPDG 569
++GG G RLT P +T ++SPDG
Sbjct: 250 SQEGTMSFAPRFAPDGETIVFSLSQGGNTDIYRMNVNGGPATRLTAAPSIETAPSYSPDG 309
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SGS ++Y++ +G R++ S GR P +SP G + FT
Sbjct: 310 TQIVFESDR----SGSQQLYVMPASGGEARRI--SFGPGRYGTPVWSPRGDLVAFTKQNA 363
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G I ++LDGS+ +RL SF D P W P
Sbjct: 364 G--------------RFHIGVMRLDGSE-ERLLTASFLDEGPTWSP 394
>gi|358375722|dbj|GAA92300.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 659
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 239/583 (40%), Gaps = 107/583 (18%)
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
RV+ DL E+ +++D ++S G YVST N A ++ +L+TG
Sbjct: 129 RVRTNGSDLQELVA-TPAVEDSVVISPNGRLAAYVSTANNMK------ANIWVLDLQTGA 181
Query: 208 TRRLT--PYGVADFS-------PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD 258
LT P A+ S PA SP G++ A +S N WDG E FL R
Sbjct: 182 QWNLTNTPSTAANSSLVESYLRPAWSPDGEWIAFSSDRNTQWDGHGEP------TFLGRT 235
Query: 259 G---TQRVKIVE---NG--------------GWPCW-VDESTLFFHRKSEEDDWISVYKV 297
G TQ + + NG G P W D + ++ + ED Y
Sbjct: 236 GWETTQELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYYEMTRED----TYNA 291
Query: 298 ILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYR----HIELF 352
P+T ++T + +I V G G +F R T +Y E F
Sbjct: 292 HRPET--ITTANSTIMSVDFATGTDVRVEVAGSGVKQFPQYLDRNGTIAYTLKGGTSEGF 349
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK----CRGGSTREDGNNQLLLENIK 408
++ T +P SPD +V Y K R G + +
Sbjct: 350 YTTAGLYVNTT-----SATLRSPAWSPDGKQVVYEKTTWSIRAG-----------YKKLY 393
Query: 409 SPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVW 464
S D +RF FP S + +RIA + + +N+ G++ + VY + V
Sbjct: 394 SWDSDWD-YRFTDVFPQISHQ-ERIAITQKQLGNSSIVTLNTTGADLQLVYDPSTADFVS 451
Query: 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGK 523
D E ++ P + S E + + + + V++ +T +G NN FPS SPDGK
Sbjct: 452 D--NETTGLSAYQPSW-SPCGEWLVFGVYSEVL--VNSSYSITEDGALNNGFPSFSPDGK 506
Query: 524 WIVFR---STRTGYKN-----LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
+V+R + Y N L ++D E L TE W D + +SPDGE I F
Sbjct: 507 KVVYRVWGADTATYGNASEIGLRVLDLETRNTTVL--TTE--W-DNLPQFSPDGELILFT 561
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
+ ++++ I P+GT LR L SG+ H +S DG+ I++++ G E
Sbjct: 562 R---KTSTYNYDVCTIRPDGTDLRVLTSSGA--NDAHAVWSQDGR-IMWSTGMYGFRFEC 615
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFI 678
+QPYG+I + DG + K +T + +ED P + PR +
Sbjct: 616 ALYDDTFQPYGQIMIMDKDGGNKKLMTNSMWEDSMPLFLPREV 658
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 60/276 (21%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
+Y+ N+DGSN R + + DPV E S E+ + +SE + DG
Sbjct: 81 LYIANTDGSNERPL--------LSDPVFEYHASFSPDGEWITFTSE--------RNGDGN 124
Query: 501 SAVRRLTTNGKN----NAFPSV------SPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG 549
S + R+ TNG + A P+V SP+G+ + ST K N++++D + G +
Sbjct: 125 SDIYRVRTNGSDLQELVATPAVEDSVVISPNGRLAAYVSTANNMKANIWVLDLQTGAQWN 184
Query: 550 LHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSGSFE---------------- 587
L + ++ WSPDGEWIAF+SDR+ G E
Sbjct: 185 LTNTPSTAANSSLVESYLRPAWSPDGEWIAFSSDRNTQWDGHGEPTFLGRTGWETTQELS 244
Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF-----TSDYGGISAEPISTPHQY 642
+Y I PNG+ R++I S P +S DGK IV+ Y E I+T +
Sbjct: 245 LYAIRPNGSDFRQII-SKPYYSLGSPKWSADGKRIVYYEMTREDTYNAHRPETITTANST 303
Query: 643 Q-----PYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
G ++++ GS +K+ Q +GT A+
Sbjct: 304 IMSVDFATGTDVRVEVAGSGVKQFPQYLDRNGTIAY 339
>gi|260062320|ref|YP_003195400.1| tolB protein [Robiginitalea biformata HTCC2501]
gi|88783882|gb|EAR15053.1| tolB protein [Robiginitalea biformata HTCC2501]
Length = 303
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 120/257 (46%), Gaps = 44/257 (17%)
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESS 485
+IAFV P VY+++ DG+N + ++ FS W ++ + ++
Sbjct: 34 KIAFVTDRDGNPEVYIMDGDGANPENLTRHDSLDFSPSWSADGTSLSF------YSKRDG 87
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEG 544
+I +++ + RLT + + P SPDG I+F S R +N+Y+MD +G
Sbjct: 88 NAEIYRMDLQ----TRQLTRLTNHPATDVLPVPSPDGSQILFMSDRDSLSRNVYVMDKDG 143
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAF------ASDRDNPGSGSFEMYLIHPNGTGL 598
G+ +LT + WSPDG IAF +SD + G+G E++L+ G G+
Sbjct: 144 S---GIRQLTRNAAYEESPEWSPDGSQIAFTRQLRDSSDTSHAGNG--EIFLMDAQGGGV 198
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
++L G + FSPDG I F YG + Q+ +++ I DG+ L
Sbjct: 199 KRLTDK--EGYDSGAKFSPDGSKIAF---YG-------AQEDQW----DLYTINADGTGL 242
Query: 659 KRLTQNSFEDGTPAWGP 675
+ LT ++ E +P W P
Sbjct: 243 QNLTNDAIECYSPDWSP 259
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 34/200 (17%)
Query: 485 SEVDIISINV--DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR--------STRTGY 534
S+ D +S NV D DG S +R+LT N P SPDG I F ++ G
Sbjct: 127 SDRDSLSRNVYVMDKDG-SGIRQLTRNAAYEESPEWSPDGSQIAFTRQLRDSSDTSHAGN 185
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+++MDA+GG G+ RLT+ D+ +SPDG IAF +++ +++Y I+ +
Sbjct: 186 GEIFLMDAQGG---GVKRLTDKEGYDSGAKFSPDGSKIAFYGAQED----QWDLYTINAD 238
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
GTGL+ L + A P +SPDG+ +V+T+ G Y I+KI +
Sbjct: 239 GTGLQNL--TNDAIECYSPDWSPDGEWLVYTAGSKG----------NYN----IWKINIR 282
Query: 655 GSDLKRLTQNSFEDGTPAWG 674
+ RLT+ S + P+WG
Sbjct: 283 TKERVRLTRTSGRNEAPSWG 302
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 109/271 (40%), Gaps = 31/271 (11%)
Query: 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNP 375
+ PG+ A T G F+ P + + D LTR S +P
Sbjct: 19 SKPGVSADQAETGSGKIAFVTDRDGNP-----EVYIMDGDGANPENLTRHDS---LDFSP 70
Query: 376 FISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
S D + + ++ R G+ R D + L P D+ P SP G +
Sbjct: 71 SWSADGTSLSFYSKRDGNAEIYRMDLQTRQLTRLTNHPATDV--------LPVPSPDGSQ 122
Query: 433 IAFVE-----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFASESS 485
I F+ VYV++ DGS RQ+ A+ S W P + +T + +S++S
Sbjct: 123 ILFMSDRDSLSRNVYVMDKDGSGIRQLTRNAAYEESPEWSPDGSQIAFTRQLRD-SSDTS 181
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I + D G V+RLT ++ SPDG I F + +LY ++A+G
Sbjct: 182 HAGNGEIFLMDAQG-GGVKRLTDKEGYDSGAKFSPDGSKIAFYGAQEDQWDLYTINADG- 239
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
GL LT +WSPDGEW+ + +
Sbjct: 240 --TGLQNLTNDAIECYSPDWSPDGEWLVYTA 268
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 125/333 (37%), Gaps = 87/333 (26%)
Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENGGW--------------PCW-VDESTLFFHRKSE 287
+ E S I RDG V I++ G P W D ++L F+ S+
Sbjct: 27 QAETGSGKIAFVTDRDGNPEVYIMDGDGANPENLTRHDSLDFSPSWSADGTSLSFY--SK 84
Query: 288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYR 347
D +Y++ L ++ + R+T P SP ++ + ++ R S R
Sbjct: 85 RDGNAEIYRMDL--------QTRQLTRLTNHPATDVLPVPSPDGSQILFMSDRDSLS--R 134
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY-HKCRGGS-TREDGNNQLLLE 405
++ + D + +LTR + + +P SPD S++ + + R S T GN ++ L
Sbjct: 135 NVYVMDKDGSGIRQLTRNAA---YEESPEWSPDGSQIAFTRQLRDSSDTSHAGNGEIFLM 191
Query: 406 NIK----SPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFS 461
+ + L D + S FSP G +IAF
Sbjct: 192 DAQGGGVKRLTDKEGY---DSGAKFSPDGSKIAF-------------------------- 222
Query: 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
+ ++ + D+ +IN D + ++ LT + P SPD
Sbjct: 223 ------------------YGAQEDQWDLYTINADG----TGLQNLTNDAIECYSPDWSPD 260
Query: 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
G+W+V+ + G N++ ++ E L R +
Sbjct: 261 GEWLVYTAGSKGNYNIWKINIRTKERVRLTRTS 293
>gi|84687705|ref|ZP_01015578.1| translocation protein TolB precursor [Maritimibacter alkaliphilus
HTCC2654]
gi|84664288|gb|EAQ10779.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2654]
Length = 444
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYT-- 474
P FS GDR+ + + P +YV+ + RR + AFS + P ++++
Sbjct: 215 PRFSKSGDRVLYTSYETGQPQIYVLEVGSAQRRALGTGGGNMAFSPRFSPDGNGLIFSLE 274
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
GG +SE+ + +N + +LT + + PS SPDG IVF S R+G
Sbjct: 275 QGG------NSEIYRMDLNG------GGLVQLTNSPAIDTAPSFSPDGSRIVFESDRSGT 322
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+ +Y+M A GGE R++ GP WSP G+ IAF +G F + ++ +
Sbjct: 323 QQIYVMSANGGE---PQRISFGPGRYGTPVWSPRGDLIAFTKQN----AGRFHIGVMRTD 375
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ R L S P ++P+G+ I+FT + G P ++ + +
Sbjct: 376 GSEERLLTAS---FLDEGPTWAPNGRVIMFTRESQGAEGAP-----------GLYSVDIS 421
Query: 655 GSDLKRL-TQNSFEDGTPAWGP 675
G +L+R+ T ++ D P+WGP
Sbjct: 422 GRNLRRVPTPDAASD--PSWGP 441
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V+ LT + P S G +++ S TG +Y+++ +
Sbjct: 192 LAVMDYDGAN-VKYLTDSESLLLAPRFSKSGDRVLYTSYETGQPQIYVLEVGSAQ----- 245
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R G M +SPDG + F+ ++ G+ E+Y + NG GL +L S +
Sbjct: 246 RRALGTGGGNMAFSPRFSPDGNGLIFSLEQ----GGNSEIYRMDLNGGGLVQLTNSPAID 301
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
A P FSPDG IVF SD G +I+ + +G + +R++
Sbjct: 302 TA--PSFSPDGSRIVFESDRSGTQ--------------QIYVMSANGGEPQRISFGPGRY 345
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 346 GTPVWSPR 353
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 96/233 (41%), Gaps = 25/233 (10%)
Query: 277 ESTLFFHRKSEEDDWI--SVYKVILPQTGLVSTESVSIQRV-TPPGLHAFTPATSPGNNK 333
ES L R S+ D + + Y+ PQ ++ S + + T G AF+P SP N
Sbjct: 209 ESLLLAPRFSKSGDRVLYTSYETGQPQIYVLEVGSAQRRALGTGGGNMAFSPRFSPDGNG 268
Query: 334 FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393
I + S I DL ++LT SP P SPD SR+ + R G+
Sbjct: 269 LIFSLEQGGNS---EIYRMDLNGGGLVQLTN--SPAIDTA-PSFSPDGSRIVFESDRSGT 322
Query: 394 TREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDG 448
Q+ + + P IS P +SP+GD IAF + + V+ +DG
Sbjct: 323 ------QQIYVMSANGGEPQRISFGPGRYGTPVWSPRGDLIAFTKQNAGRFHIGVMRTDG 376
Query: 449 SNRRQVY--FKNAFSTVWDPVREAVVYT--SGGPEFASESSEVDIISINVDDV 497
S R + F + T W P +++T S G E A VDI N+ V
Sbjct: 377 SEERLLTASFLDEGPT-WAPNGRVIMFTRESQGAEGAPGLYSVDISGRNLRRV 428
>gi|423482349|ref|ZP_17459039.1| hypothetical protein IEQ_02127 [Bacillus cereus BAG6X1-2]
gi|401143653|gb|EJQ51187.1| hypothetical protein IEQ_02127 [Bacillus cereus BAG6X1-2]
Length = 143
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 24/157 (15%)
Query: 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
+I F S R G +Y+M+A+G +T P DT +WSPDG+ IAF S RD
Sbjct: 11 YINFPSIRDGNNEIYVMNADGSN---QTNITNSPGGDTQPSWSPDGQKIAFTSVRD---- 63
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
G+ E+Y+++ +G+ L + ++ P +SPDG+ I FTS+ G
Sbjct: 64 GNLEIYVMNADGSNQIPLTNNPNSDS--EPTWSPDGQKIAFTSNRDG------------- 108
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
EI+ + DGS+ RLT N D PAW P F P
Sbjct: 109 -NNEIYVMNADGSNQSRLTINLTPDSNPAWSP-FTSP 143
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 435 FVEFPGV-------YVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++ FP + YV+N+DGSN+ + T W P + + +TS
Sbjct: 11 YINFPSIRDGNNEIYVMNADGSNQTNITNSPGGDTQPSWSPDGQKIAFTS------VRDG 64
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
++I +N D + + LT N +++ P+ SPDG+ I F S R G +Y+M+A+G
Sbjct: 65 NLEIYVMNADGSNQIP----LTNNPNSDSEPTWSPDGQKIAFTSNRDGNNEIYVMNADGS 120
Query: 546 EGYGLHRLTEGPWSDTMCNWSP 567
RLT D+ WSP
Sbjct: 121 N---QSRLTINLTPDSNPAWSP 139
>gi|302882872|ref|XP_003040341.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI
77-13-4]
gi|256721219|gb|EEU34628.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI
77-13-4]
Length = 629
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 147/609 (24%), Positives = 236/609 (38%), Gaps = 128/609 (21%)
Query: 140 LEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAA 197
++ +G+E+ T VQ S +D +LS G L YVST N A
Sbjct: 76 VKPNGSELETLVQTD------------SFEDAGVLSPDGTTLAYVSTQGNYT------AN 117
Query: 198 VYSTELKTGLTRRLT-----------PYGVADFSPAVSPSGKYTAVASYGNKGW----DG 242
++ +L+TG+ + LT P G F PA SP G++ A +S N W DG
Sbjct: 118 IWVKDLRTGIAKNLTNTASTRGDRSSPQG--HFRPAWSPDGEWIAFSSDRNTEWTGHSDG 175
Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENG-----GWPCWV-DESTLFFHRKSEEDDWISVYK 296
+ + I++ R + V + G P W D S + + S ED + +
Sbjct: 176 TGWEHTQTLSIYIIRPNGSDFRAVASKPGYALGSPQWSPDGSRILYSSISTEDTYGA--H 233
Query: 297 VILPQTGLVSTESVSIQRVTPPGLHAFTPATSP---------GNNKFIAVATRRPTSSYR 347
+ Q +S + S+ T GL + P GN I + S
Sbjct: 234 GVSNQMEALSGQIESVDIAT--GLDIVEHTSGPYLKVGQHYIGNGDNIGYVVKAGPSEGI 291
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
+ D F+ ++ NP SPD ++V Y ++ ++
Sbjct: 292 NYTKSDASHTAFL--------RSGVRNPSWSPDGTKVVY--------------EVSSWDV 329
Query: 408 KSPLPDI------SLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-- 455
+SP + +RF FP ++ +R+ F + V ++ ++ ++V+
Sbjct: 330 RSPAKKLFSWDEEWEYRFMDVFPQYNKATERLVFTQKQLGNSSVVTSTTEYTDLKEVFDV 389
Query: 456 ------------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
AF W P + G F S+ I N
Sbjct: 390 YDVWSTDNETEVGIVKSGLGGAFQPTWSPDGSQIAVGFGVWFFNRNSNPASIYLANATG- 448
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK---NLYIMDAEGGEGYGLHRLT 554
DG + + T+ N FPS SPDG +V+R + K L I+D G+ LT
Sbjct: 449 DGFYNMTDIETD-LNAGFPSFSPDGTKLVYRLWNSKDKIPLGLRILDLTTGK---TTNLT 504
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGS-GS------FEMYLIHPNGTGLRKLIQSGSA 607
G W D WSPDGE I F + GS F++ I P+G+ L ++ S
Sbjct: 505 SG-W-DNTPGWSPDGERIVFTRQVNWTSEYGSRWYEDRFDIMTIRPDGSDLTQVTDS--P 560
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
H +S DG+ I++++ G E + +QPYG+I + DGS+ + LT + +E
Sbjct: 561 ANDAHAVWSYDGR-ILWSTGMYGFRDESSQYENTFQPYGQIMVMDADGSNKRMLTDSMWE 619
Query: 668 DGTPAWGPR 676
D P + PR
Sbjct: 620 DSMPLYVPR 628
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 521 DGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
DGK +F R LY+ +A+G + L + D +WSP G+WI F+S+R
Sbjct: 7 DGKRGIFYLNRIAPSGSLLYVANADGSDAKPLMNNGSAAF-DFHASWSPGGKWIVFSSER 65
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
G ++Y + PNG+ L L+Q+ S A SPDG ++ + S G +A
Sbjct: 66 --RADGQSDIYRVKPNGSELETLVQTDSFEDAG--VLSPDGTTLAYVSTQGNYTA 116
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAF---PSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGY 548
V + DG A + L NG + AF S SP GKWIVF S R G ++Y + G E
Sbjct: 27 VANADGSDA-KPLMNNG-SAAFDFHASWSPGGKWIVFSSERRADGQSDIYRVKPNGSE-- 82
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
L L + + SPDG +A+ S + N + + L TG+ K + + ++
Sbjct: 83 -LETLVQTDSFEDAGVLSPDGTTLAYVSTQGNYTANIWVKDLR----TGIAKNLTNTAST 137
Query: 609 RAN--------HPYFSPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
R + P +SPDG+ I F+SD + T ++ I+ I+ +GSD +
Sbjct: 138 RGDRSSPQGHFRPAWSPDGEWIAFSSDRNTEWTGHSDGTGWEHTQTLSIYIIRPNGSDFR 197
Query: 660 RLTQN-SFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRD 707
+ + G+P W P D + + ED + + NQ +
Sbjct: 198 AVASKPGYALGSPQWSP------DGSRILYSSISTEDTYGAHGVSNQME 240
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 15/102 (14%)
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
DG+ F +R P SGS +Y+ + +G+ + L+ +GSA H +SP GK IVF+S+
Sbjct: 7 DGKRGIFYLNRIAP-SGSL-LYVANADGSDAKPLMNNGSAAFDFHASWSPGGKWIVFSSE 64
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ-NSFED 668
+ +I+++K +GS+L+ L Q +SFED
Sbjct: 65 ------------RRADGQSDIYRVKPNGSELETLVQTDSFED 94
>gi|145237008|ref|XP_001391151.1| hypothetical protein ANI_1_1414064 [Aspergillus niger CBS 513.88]
gi|134075616|emb|CAK39282.1| unnamed protein product [Aspergillus niger]
Length = 681
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 153/597 (25%), Positives = 240/597 (40%), Gaps = 117/597 (19%)
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
RV+ DL E+ +++D ++S G YVST N A ++ +L+TG
Sbjct: 129 RVRTNGSDLQELVA-TPAVEDSVVISPNGRLAAYVSTANNMK------ANIWILDLQTGA 181
Query: 208 TRRLT--PYGVADFS-------PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD 258
LT P A+ S PA SP G++ A +S N WDG + FL R
Sbjct: 182 QWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGH------GVPTFLGRT 235
Query: 259 G---TQRVKIVE---NG--------------GWPCW-VDESTLFFHRKSEEDDWISVYKV 297
G TQ + + NG G P W D + ++ + ED Y
Sbjct: 236 GWETTQELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYYEMTRED----TYNA 291
Query: 298 ILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYR----HIELF 352
P+T ++T + +I V G G +F + T +Y E F
Sbjct: 292 HRPET--ITTANSTIMSVDFETGTDVRVEVAGSGVKQFPQYLDKNGTIAYTLKGGTSEGF 349
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP 412
++ T +P SPD +V Y K + G QL +
Sbjct: 350 YTTAGLYVNTT-----SATLRSPAWSPDGKQVVYEKSTW--SIRSGYKQLYSWDSDWD-- 400
Query: 413 DISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY------------- 455
+RF FP S + +R+A + + +N+ G + + VY
Sbjct: 401 ----YRFTDVFPQVSHQ-ERVAITQKQLGNSSIVTLNTTGGDLQLVYDPSTADFVSDDET 455
Query: 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG------VSAVRRLTT 508
+A+ W P E +V+ G F E+ E I +G V++ +T
Sbjct: 456 TGLSAYQPSWSPCGEWLVFGVG---FWFETREASGGWIVRATANGSYSEVLVNSSYSITE 512
Query: 509 NGK-NNAFPSVSPDGKWIVFR---STRTGYKN-----LYIMDAEGGEGYGLHRLTEGPWS 559
+G N+ FPS SPDGK +V+R + Y N L ++D E + L TE W
Sbjct: 513 DGALNSGFPSFSPDGKKVVYRVWGADTATYGNASEIGLRVLDLETRKTTVL--TTE--W- 567
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
D + +SPDGE I F + ++++ I P+GT LR L SG+ H +S DG
Sbjct: 568 DNLPQFSPDGELILFTR---KTSTYNYDVCTIRPDGTDLRVLTSSGA--NDAHAVWSQDG 622
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ I++++ G E +QPYG++ + DG + K +T + +ED P + PR
Sbjct: 623 R-IMWSTGMYGFRFECALYGDTFQPYGQVMIMDADGGNKKLMTNSMWEDSMPLFLPR 678
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 62/277 (22%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD-DVDG 499
+Y+ N+DGSN R + + +PV E AS S +V+ I+ + + DG
Sbjct: 81 LYIANTDGSNERPL--------LSNPVYEY---------HASFSPDVEWITFTSERNGDG 123
Query: 500 VSAVRRLTTNGKN----NAFPSV------SPDGKWIVFRSTRTGYK-NLYIMDAEGGEGY 548
S + R+ TNG + A P+V SP+G+ + ST K N++I+D + G +
Sbjct: 124 NSDIYRVRTNGSDLQELVATPAVEDSVVISPNGRLAAYVSTANNMKANIWILDLQTGAQW 183
Query: 549 GLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSG----------------SF 586
L + ++ WSPDGEWIAF+SDR+ G
Sbjct: 184 NLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQEL 243
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF-----TSDYGGISAEPISTPHQ 641
+Y I PNG+ R++I S P +S DGK IV+ Y E I+T +
Sbjct: 244 SLYAIRPNGSDFRQII-SKPYYSLGSPKWSADGKRIVYYEMTREDTYNAHRPETITTANS 302
Query: 642 YQ-----PYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
G ++++ GS +K+ Q ++GT A+
Sbjct: 303 TIMSVDFETGTDVRVEVAGSGVKQFPQYLDKNGTIAY 339
>gi|259417642|ref|ZP_05741561.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp.
TrichCH4B]
gi|259346548|gb|EEW58362.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp.
TrichCH4B]
Length = 441
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P +VY+
Sbjct: 212 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRILSAGNGSMSFAPRFAPNGHTIVYSQ- 270
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S D+ S++++ + +RLT+ PS SPDG +VF S R+G
Sbjct: 271 -----SAGGNTDLFSMDINSGN----PQRLTSAPSIETAPSFSPDGSQLVFESDRSGTSQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M GGE R++ G WSP G++IAF +G F + ++ +G+
Sbjct: 322 LYVMPVSGGEA---KRISFGQGRYGTPVWSPRGDYIAFTKQN----AGRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S + ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGQ-----------ARLYSVDISGR 420
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D P+W P
Sbjct: 421 NLKPVKTPDGASD--PSWSP 438
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D G
Sbjct: 189 LAIMDYDGAN-VQYLTNSESIVLAPRFSPTGDRVLYTSYESGFPQIHVLDV----GRVQR 243
Query: 552 R-LTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R L+ G S + ++P+G I ++ G+ +++ + N ++L + S
Sbjct: 244 RILSAGNGSMSFAPRFAPNGHTIVYSQS----AGGNTDLFSMDINSGNPQRLTSAPSIET 299
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
A P FSPDG +VF SD G S +++ + + G + KR++ G
Sbjct: 300 A--PSFSPDGSQLVFESDRSGTS--------------QLYVMPVSGGEAKRISFGQGRYG 343
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 344 TPVWSPR 350
>gi|409405009|ref|ZP_11253482.1| periplasmic component of the Tol biopolymer transport system
protein [Herbaspirillum sp. GW103]
gi|386435776|gb|EIJ48600.1| periplasmic component of the Tol biopolymer transport system
protein [Herbaspirillum sp. GW103]
Length = 432
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 133/307 (43%), Gaps = 57/307 (18%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + + ++S P IS P++SP G ++A+V
Sbjct: 168 STRISYVTKSGNEYRLEVADADGEGTQVALRSNEPIIS--------PAWSPDGTKVAYVS 219
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDI 489
F P VY+ N R V FK + S W P R AV T G +
Sbjct: 220 FEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDG-----------L 268
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + + DG S +RRLT + + P SPDG I F S R+G +Y + +GG
Sbjct: 269 TQVYLINADG-SGLRRLTNSSGIDTEPQFSPDGGSIYFTSDRSGGPQIYKVGLDGGTP-- 325
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAG 608
R+T + SPDG+ +AF S RD G F++Y + NG +R G
Sbjct: 326 -QRVTFNGSYNISPRISPDGKTLAFISRRD----GLFQLYALDLTNGQEIRL----SDGG 376
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
R P F+P+GK I++ ++ G G + + +DG +RLT + +
Sbjct: 377 RDQSPSFAPNGKYIMYATESG--------------RRGSLAVVSVDGRVKQRLTTQAGDI 422
Query: 669 GTPAWGP 675
P WGP
Sbjct: 423 REPTWGP 429
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD ++V Y E + ++N+ + I + F+ S P++SP G
Sbjct: 204 ISPAWSPDGTKVAYVSF------EMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGS 257
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A VY++N+DGS R++ + T + P ++ +TS GGP+
Sbjct: 258 RLAVALTRDGLTQVYLINADGSGLRRLTNSSGIDTEPQFSPDGGSIYFTSDRSGGPQ--- 314
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I + +D +R+T NG N P +SPDGK + F S R G LY +D
Sbjct: 315 ------IYKVGLDG----GTPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDL 364
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
G+ RL++G D +++P+G++I +A++ GS
Sbjct: 365 TNGQEI---RLSDG-GRDQSPSFAPNGKYIMYATESGRRGS 401
>gi|350635334|gb|EHA23695.1| hypothetical protein ASPNIDRAFT_180130 [Aspergillus niger ATCC
1015]
Length = 681
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 156/596 (26%), Positives = 239/596 (40%), Gaps = 117/596 (19%)
Query: 150 RVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGL 207
RV+ DL E+ +++D ++S G YVST N A ++ +L+TG
Sbjct: 129 RVRTNGSDLQELVA-TPAVEDSVVISPNGRLAAYVSTANNMK------ANIWILDLQTGA 181
Query: 208 TRRLT--PYGVADFS-------PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD 258
LT P A+ S PA SP G++ A +S N WDG + FL R
Sbjct: 182 QWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGH------GVPTFLGRT 235
Query: 259 G---TQRVKIVE---NG--------------GWPCW-VDESTLFFHRKSEEDDWISVYKV 297
G TQ + + NG G P W D + ++ + ED Y
Sbjct: 236 GWETTQELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYYEMTRED----TYNA 291
Query: 298 ILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYR----HIELF 352
P+ ++T + +I V G G +F + T +Y E F
Sbjct: 292 HRPEA--ITTANSTIMSVDFETGTDVRVEVAGSGVKQFPQYLDKNGTIAYTLKGGTSEGF 349
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP 412
++ T +P SPD +V Y K S R G QL +
Sbjct: 350 YTTAGLYVNTT-----SATLRSPAWSPDGKQVVYEKTTW-SIRA-GYKQLYSWDSDWD-- 400
Query: 413 DISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY------------- 455
+RF FP S + +RIA + + +N+ G + + VY
Sbjct: 401 ----YRFTDVFPQVSHQ-ERIAITQKQLGNSSIVTLNTTGGDLQLVYDPSTADFVSDDET 455
Query: 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG------VSAVRRLTT 508
+A+ W P E +V+ G F E+ E I +G V++ +T
Sbjct: 456 TGLSAYQPSWSPCGEWLVFGVG---FWFETREASGGWIVRATANGSYAEVLVNSSYSITE 512
Query: 509 NGK-NNAFPSVSPDGKWIVFR---STRTGYKN-----LYIMDAEGGEGYGLHRLTEGPWS 559
+G NN FPS SPDGK +V+R + Y N L ++D E + L TE W
Sbjct: 513 DGALNNGFPSFSPDGKKVVYRVWGADTASYGNASEIGLRVLDLETRKTTVL--TTE--W- 567
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
D + +SPDGE I F + ++++ I P+GT LR L SG+ H +S DG
Sbjct: 568 DNLPQFSPDGELILFTR---KTSTYNYDVCTIRPDGTDLRVLTSSGA--NDAHAVWSQDG 622
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ I++++ G E +QPYG+I + DG + K +T + +ED P + P
Sbjct: 623 R-IMWSTGMYGFRFECALYDDTFQPYGQIMIMDADGGNKKLMTNSMWEDSMPLFLP 677
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 131/302 (43%), Gaps = 71/302 (23%)
Query: 422 SFPSFSPKG----DRIAFVEFPG---VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYT 474
S PS KG +RIA PG +Y+ N+DGSN R + + +PV E
Sbjct: 59 STPSVGQKGVFMMNRIA----PGTSELYIANTDGSNERPL--------LSNPVYEYHASF 106
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN----NAFPSV------SPDGKW 524
S E+ + +SE + DG S + R+ TNG + A P+V SP+G+
Sbjct: 107 SPDGEWITFTSE--------RNGDGNSDIYRVRTNGSDLQELVATPAVEDSVVISPNGRL 158
Query: 525 IVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTMCN------WSPDGEWIAFASD 577
+ ST K N++I+D + G + L + ++ WSPDGEWIAF+SD
Sbjct: 159 AAYVSTANNMKANIWILDLQTGAQWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSD 218
Query: 578 RDNPGSG----------------SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
R+ G +Y I PNG+ R++I S P +S DGK
Sbjct: 219 RNTQWDGHGVPTFLGRTGWETTQELSLYAIRPNGSDFRQII-SKPYYSLGSPKWSADGKR 277
Query: 622 IVF-----TSDYGGISAEPISTPHQYQ-----PYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
IV+ Y E I+T + G ++++ GS +K+ Q ++GT
Sbjct: 278 IVYYEMTREDTYNAHRPEAITTANSTIMSVDFETGTDVRVEVAGSGVKQFPQYLDKNGTI 337
Query: 672 AW 673
A+
Sbjct: 338 AY 339
>gi|169785140|ref|XP_001827031.1| hypothetical protein AOR_1_786034 [Aspergillus oryzae RIB40]
gi|83775778|dbj|BAE65898.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 647
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 137/558 (24%), Positives = 222/558 (39%), Gaps = 97/558 (17%)
Query: 177 EYLIYVSTHENPG-----TPRTSWAA--------VYSTELKTGLTRRLTPY-GVAD---- 218
E L+ S+ E+ G + +W + V+ +LKTG R LT GV
Sbjct: 123 EKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTSLEGVKGDPTK 182
Query: 219 ----FSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKIVENG 269
F P+ SP G++ A +S N W G + ++ +++ R DGT KI
Sbjct: 183 PNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASRE 242
Query: 270 GW----PCWV-DESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVS----IQRVTPP 318
GW P W D S + F+ + E+ W + V + +VS + + IQ
Sbjct: 243 GWSLGSPRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGT 302
Query: 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378
G+ + N ++ Y V N + +P S
Sbjct: 303 GVKVSPQYVTADNIGYLIKGGSSEGIHYTAESSTGTVINGTMR------------SPSWS 350
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF 438
PD V Y K + + + + + S P+ +RF FP S +G R+A +
Sbjct: 351 PDGKSVVYEKS-------EFEARPMEKKLYSWDPEWE-YRFTDVFPDLSQQG-RLAITQK 401
Query: 439 ----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSGGP 478
+ + DG +++ V+ AF W P E + + G
Sbjct: 402 QLGNSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAFGIGA- 460
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYKNL 537
F S ++ I+ D + + TNG NA FPS S DG+++V+R T + L
Sbjct: 461 WFQSRATGKGYIARAKAD----GSYHEILTNGTINAGFPSYSLDGRYLVYRVWGTEF-GL 515
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
IMD + LT D + +SPDG+ I F +F++ I P+G+
Sbjct: 516 RIMDLTDKS---VRVLTTT--RDNLPFYSPDGQRIVFTR---RTSYTNFDVCTIRPDGSD 567
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L+ L SG+ H ++ DG+ I++ S G E + +QPYG+IF + DGS+
Sbjct: 568 LKVLTSSGA--NDAHATWTADGR-ILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADGSN 624
Query: 658 LKRLTQNSFEDGTPAWGP 675
LT + +ED + P
Sbjct: 625 KTILTDSIWEDSMALYLP 642
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+YV N DGSN R++ N+ + + P + + +TS + D+ D
Sbjct: 65 LYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSE----RNGDGNSDLYRCRADG- 119
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEG 556
S + +L +SPD + + ST GY N+++MD + GE L L EG
Sbjct: 120 ---SGLEKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTSL-EG 175
Query: 557 PWSDTMC-------NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGL 598
D +WSPDGEWIAF+SDR+ G +Y+I P+GT
Sbjct: 176 VKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDF 235
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVF 624
RK I S P +SPDG I+F
Sbjct: 236 RK-IASREGWSLGSPRWSPDGSRIIF 260
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLH 551
V ++DG + + L N + + S SPDG+WI F S R G N LY A+G GL
Sbjct: 67 VANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRADGS---GLE 123
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+L + SPD +A+ S + + + M L L L G G
Sbjct: 124 KLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTSL--EGVKGDPT 181
Query: 612 HP--YF----SPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQ 663
P YF SPDG+ I F+SD T ++ ++ I+ DG+D +++ ++
Sbjct: 182 KPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASR 241
Query: 664 NSFEDGTPAWGP 675
+ G+P W P
Sbjct: 242 EGWSLGSPRWSP 253
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 127/334 (38%), Gaps = 88/334 (26%)
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDG 421
P+TH +P V G S+ E DG+N+ L S RFD
Sbjct: 36 PRTHSARGLPAPGKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNS--------RFD- 86
Query: 422 SFPSFSPKGDRIAFV-EFPG-----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVY 473
SFSP G I F E G +Y +DGS ++ ++ + V P V +
Sbjct: 87 YHASFSPDGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAW 146
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-- 531
S + + +D+ + ++ + V+ T PS SPDG+WI F S R
Sbjct: 147 VSTANGYTTNVWVMDLKTGEQRNLTSLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNT 206
Query: 532 --------TGYKN-----LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF---- 574
TG+++ +Y++ +G + + EG WS WSPDG I F
Sbjct: 207 EWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIAS-REG-WSLGSPRWSPDGSRIIFYEIT 264
Query: 575 ------ASDRDNPGSGSFEMYLI----------HPNGTGLR------------KLIQSGS 606
A ++ S + ++ + H NGTG++ LI+ GS
Sbjct: 265 TENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGS 324
Query: 607 A----------------GRANHPYFSPDGKSIVF 624
+ G P +SPDGKS+V+
Sbjct: 325 SEGIHYTAESSTGTVINGTMRSPSWSPDGKSVVY 358
>gi|429861172|gb|ELA35872.1| WD40 domain protein beta propeller [Colletotrichum gloeosporioides
Nara gc5]
Length = 641
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 55/288 (19%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPG---VYVVNSDGSNRRQVY----------------FK 457
+R FP S +G + + G + +N DGS+ + V+
Sbjct: 375 YRSTDVFPQLSLQGRLVITQKQLGNSSIVSMNPDGSDLKLVFDSYSTGELDSALVAKGLA 434
Query: 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK------ 511
AF W E VV+ G F S ++ G + V R T+NG
Sbjct: 435 GAFQPAWSADGEWVVFGLG-SWFQSRAT-------------GKARVYRATSNGSYYEALT 480
Query: 512 ----NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
++ FPS SPDG+++ FR Y + I+D E E L T D + WSP
Sbjct: 481 DGTVHSGFPSYSPDGRYVAFREWGLRY-GIRILDLETREVRSLTNAT-----DNLPFWSP 534
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
DGE + F S +F++ I P+GT L+ L SG+ H ++ DG+ I+++S
Sbjct: 535 DGERLVFTR---KVSSTNFDVATIRPDGTDLQILTSSGA--NDAHAVWTADGR-ILYSSG 588
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G E +QPYG+I + DGS+ + LT + +ED P + P
Sbjct: 589 MYGFRDEAAIYDQTFQPYGQIIVMDADGSNKRMLTDSLWEDSMPLYVP 636
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ N+DG+N R++ ++ + + P + VV+T+ +S++ ++
Sbjct: 65 LYIANADGTNERKLLGNSSSFEYHASFSPDGQWVVFTT--ERNGDGNSDLYRCRVSAAAN 122
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEG 556
S + +L ++SPDG + F ST GYK N+++ D GE L E
Sbjct: 123 GTCSDLEKLIATPSVEDAGALSPDGTQLAFVSTENGYKTNIWVQDLATGERRNLTNTAEI 182
Query: 557 PWSDTMC-------NWSPDGEWIAFASDRDNP----GSGS-------FEMYLIHPNGTGL 598
D + +WSPDGEWIAFASDR+ G+G+ +Y I P+GTG
Sbjct: 183 A-GDPLLPDGYFRPSWSPDGEWIAFASDRNTAWRGHGNGTGWEHTQELSVYAIRPDGTGF 241
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVF 624
R+ + + S P +S DGK +V+
Sbjct: 242 RE-VATKSGYCLGSPKWSTDGKRVVY 266
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LY---IMDAEGGE 546
+ + + DG + + L + S SPDG+W+VF + R G N LY + A G
Sbjct: 65 LYIANADGTNERKLLGNSSSFEYHASFSPDGQWVVFTTERNGDGNSDLYRCRVSAAANGT 124
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L +L P + SPDG +AF S + G + TG R+ + + +
Sbjct: 125 CSDLEKLIATPSVEDAGALSPDGTQLAFVSTEN----GYKTNIWVQDLATGERRNLTNTA 180
Query: 607 AGRAN--------HPYFSPDGKSIVFTSDYG-GISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ P +SPDG+ I F SD T ++ ++ I+ DG+
Sbjct: 181 EIAGDPLLPDGYFRPSWSPDGEWIAFASDRNTAWRGHGNGTGWEHTQELSVYAIRPDGTG 240
Query: 658 LKRL-TQNSFEDGTPAW---GPRFI-RPVDVEEVKNEQ 690
+ + T++ + G+P W G R + + VE+ N
Sbjct: 241 FREVATKSGYCLGSPKWSTDGKRVVYYEITVEDTWNAH 278
>gi|115526695|ref|YP_783606.1| translocation protein TolB [Rhodopseudomonas palustris BisA53]
gi|115520642|gb|ABJ08626.1| transport system periplasmic component [Rhodopseudomonas palustris
BisA53]
Length = 450
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 223 PRFSPTTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS +PDG I F S R G + +
Sbjct: 280 ---MQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYAPDGSRICFESDRGGKQQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G + + WSP G++IAF G G F + ++ P+GTG
Sbjct: 333 YVMPAGGG---GAQRISFGEGNYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGTG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG ++ + + G
Sbjct: 386 ERLL----TSGYHNEGPTFAPNGRVLMFFRDPGGNGGP------------SLYTVDISGR 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ F PAW P
Sbjct: 430 NEQKVPTPGFAS-DPAWSP 447
>gi|82523864|emb|CAI78812.3| TolB protein [uncultured candidate division WS3 bacterium]
Length = 464
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 192/453 (42%), Gaps = 102/453 (22%)
Query: 250 DIYIFLTRDGTQRVKIVENGGWPCWVDEST---------LFFHRKSEEDDWISVYKVILP 300
+IY+ + G QR++++ VDE T + H+ SE + + L
Sbjct: 48 EIYLGIHTTGAQRIQLL--------VDEFTCETGPLSIRVLAHQASE------ILRNDLD 93
Query: 301 QTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI----ELFDLVK 356
+GL+ T S R GL T +F A R T I EL+D+
Sbjct: 94 TSGLIQTTGGSTLR-QELGLQTLTSVDL--KKRFDAATQGRLTVEGSDIVVEAELYDVPT 150
Query: 357 NKFIELTR-------FVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE------------D 397
K + R F S + F+ + G + + RE D
Sbjct: 151 EKMVASFRRRASESTFRSTIHQMADHFLRTLTGETGIAETKIAVVREIGGRMDICAMDYD 210
Query: 398 GNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
G+N + L+EN DI+L P++SP G+ +A+ + P +YV+N + R+
Sbjct: 211 GHNLVPLVEN-----GDINLL------PAWSPLGNEVAYTSYVGGEPALYVLNLETGVRK 259
Query: 453 QVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
++ +T W P +++ + A+ + +I + D + + ++T +
Sbjct: 260 RLATPGGLNTSAAWSPDGKSLAFA------ATRGKDPEIFVVRRDG----TVLDQITFHP 309
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDG 569
+ P+ SP+G I F S R+G +Y+M A+G + RLT EG +SD+ WSP G
Sbjct: 310 AIDCSPTWSPNGHEIAFTSDRSGTPQIYVMSADG---TNVRRLTYEGNYSDSPA-WSPSG 365
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ IAF S G F + +I G + L + G +P ++PDG+ + + S+ G
Sbjct: 366 DRIAFTSRI----GGRFRICVIAAQGGPVYPL--TDGPGDHENPAWAPDGRHVAYVSNEG 419
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+SA ++ + DG++ +R++
Sbjct: 420 GMSA--------------VYVVNADGTNRRRIS 438
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 463 VWDPVREAVVYTS--GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
W P+ V YTS GG E + +N++ GV +RL T G N + SP
Sbjct: 228 AWSPLGNEVAYTSYVGG--------EPALYVLNLET--GVR--KRLATPGGLNTSAAWSP 275
Query: 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
DGK + F +TR ++++ +G L ++T P D WSP+G IAF SDR
Sbjct: 276 DGKSLAFAATRGKDPEIFVVRRDGTV---LDQITFHPAIDCSPTWSPNGHEIAFTSDR-- 330
Query: 581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH 640
SG+ ++Y++ +GT +R+L G+ ++ P +SP G I FTS GG
Sbjct: 331 --SGTPQIYVMSADGTNVRRLTYEGN--YSDSPAWSPSGDRIAFTSRIGG---------- 376
Query: 641 QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I I G + LT + PAW P
Sbjct: 377 ----RFRICVIAAQGGPVYPLTDGPGDHENPAWAP 407
Score = 38.9 bits (89), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 96/261 (36%), Gaps = 73/261 (27%)
Query: 197 AVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLT 256
A+Y L+TG+ +RL G + S A SP GK A A+ +G D E+ +
Sbjct: 247 ALYVLNLETGVRKRLATPGGLNTSAAWSPDGKSLAFAA--TRGKDPEI--------FVVR 296
Query: 257 RDGTQRVKIVENGGWPC---WVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ 313
RDGT +I + C W H + D + PQ ++S + +++
Sbjct: 297 RDGTVLDQITFHPAIDCSPTWSPNG----HEIAFTSD-----RSGTPQIYVMSADGTNVR 347
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
R+T G ++ +PA SP ++ T R +R I + LT P H
Sbjct: 348 RLTYEGNYSDSPAWSPSGDRI--AFTSRIGGRFR-ICVIAAQGGPVYPLTD--GPGDHE- 401
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
NP +PD V Y GG
Sbjct: 402 NPAWAPDGRHVAYVSNEGG----------------------------------------- 420
Query: 434 AFVEFPGVYVVNSDGSNRRQV 454
VYVVN+DG+NRR++
Sbjct: 421 ----MSAVYVVNADGTNRRRI 437
>gi|163745825|ref|ZP_02153184.1| translocation protein TolB precursor [Oceanibulbus indolifex
HEL-45]
gi|161380570|gb|EDQ04980.1| translocation protein TolB precursor [Oceanibulbus indolifex
HEL-45]
Length = 448
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +YV++ RR + AF+ + P + VVY+
Sbjct: 219 PRFSPTGDRVLYTSYESGFPRIYVLDIGTVQRRALQSAEGSMAFAPRFSPSGQTVVYS-- 276
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI S++++ V RLT PS SPDG IVF S R+G
Sbjct: 277 ----LSQGGNTDIFSMDINSGQSV----RLTNTPAIETAPSFSPDGSRIVFESDRSGSPQ 328
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 329 LYVMPATGGEA---TRISFGEGRYGTPVWSPRGDLVAFTKQN----KGRFHIGVMRLDGS 381
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+F + G ++ + + G
Sbjct: 382 EERLLTAS---FLDEGPTWAPNGRVIMFARETQGAGGS-----------SSLYSVDISGR 427
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+LK + + E G+ P+W P
Sbjct: 428 NLKPV--RTPEGGSDPSWSP 445
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 99/248 (39%), Gaps = 71/248 (28%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VVY S GP+ A + + V D DG + ++ LT +G P SP G +++ S
Sbjct: 180 VVYVSETGPKDARQKR------LAVMDYDGAN-LKYLTESGSIVLAPRFSPTGDRVLYTS 232
Query: 530 TRTGYKNLYIMD-----------AEGGEGYGLH--------------------------- 551
+G+ +Y++D AEG +
Sbjct: 233 YESGFPRIYVLDIGTVQRRALQSAEGSMAFAPRFSPSGQTVVYSLSQGGNTDIFSMDINS 292
Query: 552 ----RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
RLT P +T ++SPDG I F SDR SGS ++Y++ G ++ S
Sbjct: 293 GQSVRLTNTPAIETAPSFSPDGSRIVFESDR----SGSPQLYVMPATGGEATRI--SFGE 346
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
GR P +SP G + FT Q + I ++LDGS+ +RL SF
Sbjct: 347 GRYGTPVWSPRGDLVAFT--------------KQNKGRFHIGVMRLDGSE-ERLLTASFL 391
Query: 668 DGTPAWGP 675
D P W P
Sbjct: 392 DEGPTWAP 399
>gi|118574595|sp|Q20X63.2|TOLB_RHOPB RecName: Full=Protein TolB; Flags: Precursor
Length = 447
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + V+ +
Sbjct: 220 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRVIMS--- 276
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS +PDG I F S R G +
Sbjct: 277 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYAPDGSKICFESDRGGKPQI 329
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 330 YVMPAGGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 382
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +F + + G
Sbjct: 383 ERLL----TSGYHNEGPTFAPNGRVLMFFRDPGGNGGP------------SLFTVDISGR 426
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ F PAW P
Sbjct: 427 NEQKVPTPGFAS-DPAWSP 444
>gi|90426222|ref|YP_534592.1| translocation protein TolB [Rhodopseudomonas palustris BisB18]
gi|90108236|gb|ABD90273.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris BisB18]
Length = 450
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + V+ +
Sbjct: 223 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRVIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS +PDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYAPDGSKICFESDRGGKPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 333 YVMPAGGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +F + + G
Sbjct: 386 ERLL----TSGYHNEGPTFAPNGRVLMFFRDPGGNGGP------------SLFTVDISGR 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ F PAW P
Sbjct: 430 NEQKVPTPGFAS-DPAWSP 447
>gi|296535985|ref|ZP_06898130.1| tol-Pal system beta propeller repeat protein TolB, partial
[Roseomonas cervicalis ATCC 49957]
gi|296263689|gb|EFH10169.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas
cervicalis ATCC 49957]
Length = 434
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
Query: 417 FRFDGSF----PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWD 465
F DGSF P F P +IAF+ + P VY+ N D S R++V + S +
Sbjct: 189 FLTDGSFQVLTPRFHPNARQIAFMSYFNNQPRVYLFNLD-SGRQEVLGNFQGMTLSPRFS 247
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P +VV +S + + +I +++ R+LT+ G + PS SPDG I
Sbjct: 248 PDGRSVVLSS------ARGGDANIYVVDLAS----RRERQLTSGGGLDVSPSYSPDGSQI 297
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
VF S R G + LY+MDA GG G R++ G WSP G+ IAF G
Sbjct: 298 VFNSDRGGDQQLYVMDAGGG---GARRISFGNGRYATPVWSPRGDLIAFT----RISGGR 350
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
F + ++ P+G+G R L + S P F+P+G+ + F
Sbjct: 351 FGIGVMRPDGSGERILSEGWS---MEGPSFAPNGRVLAF 386
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG+ +V S R G N+Y++D +LT G D ++SPDG I F
Sbjct: 244 PRFSPDGRSVVLSSARGGDANIYVVDLASRR---ERQLTSGGGLDVSPSYSPDGSQIVFN 300
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
SDR G ++Y++ G G R++ S GR P +SP G I FT GG
Sbjct: 301 SDR----GGDQQLYVMDAGGGGARRI--SFGNGRYATPVWSPRGDLIAFTRISGG 349
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 42/263 (15%)
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFS------TVWDPVREAVVYTSGGPE-- 479
P+GDR A +EF ++ V+S+ + Y NA + + D + E ++ G +
Sbjct: 103 PQGDR-ARIEFR-LWEVSSEQQLQGTAYTANAANWRQIAHVISDVIYERMLGEKGYFDTR 160
Query: 480 --FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ +ES D + + +D R T+G P P+ + I F S
Sbjct: 161 IVYVAESGPRDRRTRRLAIMDQDGENHRFLTDGSFQVLTPRFHPNARQIAFMSYFNNQPR 220
Query: 537 LYIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y+ + + G L +T P +SPDG + +S R G +Y++
Sbjct: 221 VYLFNLDSGRQEVLGNFQGMTLSP------RFSPDGRSVVLSSAR----GGDANIYVVDL 270
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
R+L G G P +SPDG IVF SD GG +++ +
Sbjct: 271 ASRRERQLTSGG--GLDVSPSYSPDGSQIVFNSDRGGDQ--------------QLYVMDA 314
Query: 654 DGSDLKRLTQNSFEDGTPAWGPR 676
G +R++ + TP W PR
Sbjct: 315 GGGGARRISFGNGRYATPVWSPR 337
>gi|391874363|gb|EIT83259.1| hypothetical protein Ao3042_11485 [Aspergillus oryzae 3.042]
Length = 647
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 137/560 (24%), Positives = 222/560 (39%), Gaps = 101/560 (18%)
Query: 177 EYLIYVSTHENPG-----TPRTSWAA--------VYSTELKTGLTRRLT----------- 212
E L+ S+ E+ G + +W + V+ +LKTG R LT
Sbjct: 123 EKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTK 182
Query: 213 PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKIVE 267
P G F P+ SP G++ A +S N W G + ++ +++ R DGT KI
Sbjct: 183 PNGY--FRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIAS 240
Query: 268 NGGW----PCWV-DESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVS----IQRVT 316
GW P W D S + F+ + E+ W + V + +VS + + IQ
Sbjct: 241 REGWSLGSPRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTN 300
Query: 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF 376
G+ + N ++ Y V N + +P
Sbjct: 301 GTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESSTGTVINGTMR------------SPS 348
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
SPD V Y K + + + + + S P+ +RF FP S +G R+A
Sbjct: 349 WSPDGKSVVYEKS-------EFEARPMEKKLYSWDPEWE-YRFTDVFPDLSQQG-RLAIT 399
Query: 437 EF----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSG 476
+ + + DG +++ V+ AF W P E + + G
Sbjct: 400 QKQLGNSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAFGIG 459
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYK 535
F S ++ I+ D + + TNG NA FPS S DG+++V+R T +
Sbjct: 460 A-WFQSRATGKGYIARAKAD----GSYHEILTNGTINAGFPSYSLDGRYLVYRVWGTEF- 513
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
L IMD + LT D + +SPDG+ I F +F++ I P+G
Sbjct: 514 GLRIMDLTDKS---VRVLTTT--RDNLPFYSPDGQRIVFTR---RTSYTNFDVCTIRPDG 565
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ L+ L SG+ H ++ DG+ I++ S G E + +QPYG+IF + DG
Sbjct: 566 SDLKVLTSSGA--NDAHATWTADGR-ILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADG 622
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
S+ LT + +ED + P
Sbjct: 623 SNKTILTDSIWEDSMALYLP 642
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+YV N DGSN R++ N+ + + P + + +TS + D+ D
Sbjct: 65 LYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSE----RNGDGNSDLYRCRADG- 119
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEG 556
S + +L +SPD + + ST GY N+++MD + GE L L EG
Sbjct: 120 ---SGLEKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNL-EG 175
Query: 557 PWSDTMC-------NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGL 598
D +WSPDGEWIAF+SDR+ G +Y+I P+GT
Sbjct: 176 VKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDF 235
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVF 624
RK I S P +SPDG I+F
Sbjct: 236 RK-IASREGWSLGSPRWSPDGSRIIF 260
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLH 551
V ++DG + + L N + + S SPDG+WI F S R G N LY A+G GL
Sbjct: 67 VANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRADGS---GLE 123
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+L + SPD +A+ S + + + M L L L G G
Sbjct: 124 KLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNL--EGVKGDPT 181
Query: 612 HP--YF----SPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQ 663
P YF SPDG+ I F+SD T ++ ++ I+ DG+D +++ ++
Sbjct: 182 KPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASR 241
Query: 664 NSFEDGTPAWGP 675
+ G+P W P
Sbjct: 242 EGWSLGSPRWSP 253
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 127/334 (38%), Gaps = 88/334 (26%)
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDG 421
P+TH +P V G S+ E DG+N+ L S RFD
Sbjct: 36 PRTHSARGLPAPGKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNS--------RFD- 86
Query: 422 SFPSFSPKGDRIAFV-EFPG-----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVY 473
SFSP G I F E G +Y +DGS ++ ++ + V P V +
Sbjct: 87 YHASFSPDGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAW 146
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-- 531
S + + +D+ + ++ + V+ T PS SPDG+WI F S R
Sbjct: 147 VSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNT 206
Query: 532 --------TGYKN-----LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF---- 574
TG+++ +Y++ +G + + EG WS WSPDG I F
Sbjct: 207 EWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIAS-REG-WSLGSPRWSPDGSRIIFYEIT 264
Query: 575 ------ASDRDNPGSGSFEMYLI----------HPNGTGLR------------KLIQSGS 606
A ++ S + ++ + H NGTG++ LI+ GS
Sbjct: 265 TENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGS 324
Query: 607 A----------------GRANHPYFSPDGKSIVF 624
+ G P +SPDGKS+V+
Sbjct: 325 SEGIHYTAESSTGTVINGTMRSPSWSPDGKSVVY 358
>gi|198282216|ref|YP_002218537.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665098|ref|YP_002424581.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198246737|gb|ACH82330.1| Tol-Pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517311|gb|ACK77897.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 422
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 140/335 (41%), Gaps = 53/335 (15%)
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFI--------SPDSSRVGYHKCRGGSTREDGNNQLLL 404
+L ++F + HH+ I P +SR+ Y R+ G N LL
Sbjct: 125 ELTAHRFTCSAAELHMTAHHVADVIYQAFTGKPGPFASRIAY-------VRQTGANYELL 177
Query: 405 ---ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQVYFKN 458
+ +P P I R P +SP R+A+V + V V + +RQ
Sbjct: 178 VAESDGWNPHP-IVRGRMPVFSPVWSPDNRRLAYVTYANARAVIYVQDLATGQRQSIAPG 236
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
+ A ++ G E A S + V ++ R+LT + N P+
Sbjct: 237 G------EIVSAPAFSPNGTELAYARSSGGHTELYVANLQ-TGQRRQLTHDDAINTSPTW 289
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
SPDG I+F S R G +Y M+A GG HRL+ + +SP G IAF R
Sbjct: 290 SPDGSRIIFVSDRAGGPQIYAMNASGGAA---HRLSYDGSYNASPVYSPAGNAIAFI-HR 345
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
N G + + +++P+G+G+R L + G +HP F+ +G+ I++ + GG
Sbjct: 346 TN---GVYALAVMNPDGSGVRVL---DAQGNCDHPSFAGNGQMILYGTQRGGRKV----- 394
Query: 639 PHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ ++ LDG + L N+ ED PAW
Sbjct: 395 ---------LAEVSLDGKTMAILHSNAGEDSQPAW 420
>gi|255020130|ref|ZP_05292200.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340783543|ref|YP_004750150.1| tolB protein [Acidithiobacillus caldus SM-1]
gi|254970423|gb|EET27915.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340557694|gb|AEK59448.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus SM-1]
Length = 424
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 41/312 (13%)
Query: 370 THHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLL---ENIKSPLPDISLFRFDGSFPS 425
HH+ I + + G R R+ GN LL + +P P + R P
Sbjct: 144 AHHVADLIYKTFTGKAGPFAARIAYVRQIGNEYTLLVAESDGWNPHP-VVRGRMPVFSPV 202
Query: 426 FSPKGDRIAFVEFP---GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
+SP R+A+V + + V + +RQ + A ++ G E A
Sbjct: 203 WSPDNRRLAYVTYHDARAIIYVQDLATGQRQAVAPAG------EIVSAPAFSPDGRELAY 256
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
+E +I V VD + RR T+G N PS +PDG+ +VF S R G +Y MD
Sbjct: 257 ARAEGGATNIFV--VDLATGQRRQLTHGSAINTSPSWAPDGRHLVFVSDRAGSPQIYSMD 314
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
++GG+ +HRLT + +SP G+ IAF D G + + ++ +G+G+R L
Sbjct: 315 SDGGD---VHRLTFSGNYNASPVYSPTGQDIAFIHRTD----GVYALAVMRADGSGMRVL 367
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ G +HP F+ +G+ I++ + GG + + +DG L L
Sbjct: 368 ---DAQGNCDHPSFAGNGQMILYGTQRGGRKV--------------LAEASVDGKTLAVL 410
Query: 662 TQNSFEDGTPAW 673
+ ED PAW
Sbjct: 411 RGTAGEDSQPAW 422
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN-PFISPDS 381
F+P SP N + V +Y V++ + V+P ++ P SPD
Sbjct: 199 FSPVWSPDNRRLAYV-------TYHDARAIIYVQDLATGQRQAVAPAGEIVSAPAFSPDG 251
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE---- 437
+ Y + GG+T N +++ ++ + PS++P G + FV
Sbjct: 252 RELAYARAEGGAT-----NIFVVDLATGQRRQLTHGSAINTSPSWAPDGRHLVFVSDRAG 306
Query: 438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
P +Y ++SDG + ++ F ++ + VY+ G + A + ++ V
Sbjct: 307 SPQIYSMDSDGGDVHRLTFSGNYNA-------SPVYSPTGQDIAFIHRTDGVYALAVMRA 359
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
DG S +R L G N PS + +G+ I++ + R G K L + G+ + R T G
Sbjct: 360 DG-SGMRVLDAQG-NCDHPSFAGNGQMILYGTQRGGRKVLAEASVD-GKTLAVLRGTAG- 415
Query: 558 WSDTMCNWS 566
D+ WS
Sbjct: 416 -EDSQPAWS 423
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIA 573
P SPD + + + + +Y+ D G+ R P + + +SPDG +A
Sbjct: 201 PVWSPDNRRLAYVTYHDARAIIYVQDLATGQ-----RQAVAPAGEIVSAPAFSPDGRELA 255
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
+A G+ ++++ TG R+ + GSA + P ++PDG+ +VF SD G
Sbjct: 256 YARAE----GGATNIFVVD-LATGQRRQLTHGSAINTS-PSWAPDGRHLVFVSDRAG--- 306
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+P +I+ + DG D+ RLT + + +P + P
Sbjct: 307 ----SP-------QIYSMDSDGGDVHRLTFSGNYNASPVYSP 337
>gi|126728386|ref|ZP_01744202.1| translocation protein TolB precursor [Sagittula stellata E-37]
gi|126711351|gb|EBA10401.1| translocation protein TolB precursor [Sagittula stellata E-37]
Length = 432
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP G ++ + FP +++++ R + +F+ + P VVY+
Sbjct: 204 PRFSPTGGQVLYTSYATGFPRIHILDVGAVQSRILQANEGVMSFAPRFSPDGRMVVYS-- 261
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ S DI +++V A RRLT+ PS SPDG IVF S R+G +
Sbjct: 262 ----MTQGSNTDIWAMDVAS----GATRRLTSTPAIETAPSFSPDGSRIVFESDRSGTQQ 313
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGEG R++ G WSP G+ IAF G F + +++ +G+
Sbjct: 314 LYVMPASGGEG---TRISFGEGRYGTPVWSPRGDRIAFTKQN----KGRFHIGVMNTDGS 366
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ I+F+ + G Q ++ + + G
Sbjct: 367 EERLLTAS---FLDEGPTWAPNGRVIMFSRETQGA-----------QGASALYSVDISGR 412
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+R+ T D P+WGP
Sbjct: 413 NLRRVRTPAGASD--PSWGP 430
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------E 543
+ + D DG + V+ LT + P SP G +++ S TG+ ++I+D +
Sbjct: 181 LAIMDYDGAN-VQYLTDSSSIVLAPRFSPTGGQVLYTSYATGFPRIHILDVGAVQSRILQ 239
Query: 544 GGEGY----------------------------------GLHRLTEGPWSDTMCNWSPDG 569
EG RLT P +T ++SPDG
Sbjct: 240 ANEGVMSFAPRFSPDGRMVVYSMTQGSNTDIWAMDVASGATRRLTSTPAIETAPSFSPDG 299
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ +G ++ S GR P +SP G I FT
Sbjct: 300 SRIVFESDR----SGTQQLYVMPASGGEGTRI--SFGEGRYGTPVWSPRGDRIAFT---- 349
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I + DGS+ +RL SF D P W P
Sbjct: 350 ----------KQNKGRFHIGVMNTDGSE-ERLLTASFLDEGPTWAP 384
>gi|83859800|ref|ZP_00953320.1| translocation protein TolB precursor [Oceanicaulis sp. HTCC2633]
gi|83852159|gb|EAP90013.1| translocation protein TolB precursor [Oceanicaulis sp. HTCC2633]
Length = 448
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 34/261 (13%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P++SP +I +V F Y+ + + + R++ F + S + + + G
Sbjct: 211 LPNYSPSAQQITYVSFRDGRATSYLYDLE-TGRQEALFDSGPSLASEGQSLSARFHPNGR 269
Query: 479 EF---ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
E A S D+ ++ +R+LTT+ ++ PS +PDG+ +VF S+R G
Sbjct: 270 ELVVSAERHSGHDLFKFDLRS----RTLRQLTTHPADDVEPSYAPDGEQVVFSSSRGGQS 325
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LY+M+A+G + R+T G T WSP G+ IAF R SG F + ++ +G
Sbjct: 326 QLYVMNADGTDP---QRITFGEGRYTTPVWSPRGDLIAFTKQR----SGQFMLGVVAADG 378
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+G +++ G + P +SP+G+ ++FT G + E + I+ I L G
Sbjct: 379 SGEERILYEGYF--VDTPAWSPNGRVLLFTR--GDRTREGTTY--------SIWSIDLAG 426
Query: 656 SDLKRL-TQNSFEDGTPAWGP 675
+L+RL TQ D PAW P
Sbjct: 427 FNLRRLPTQGEASD--PAWSP 445
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 480 FASESSEVDIISINVDDVDGVSA--VRRLTT---NGKNNAF----------PSVSPDGKW 524
ES D + V + DG + +RRL +G N +F P+ SP +
Sbjct: 161 LTGESGYFDTRIVYVSEGDGPNGEPIRRLAVMDQDGANPSFLTDRSYMALLPNYSPSAQQ 220
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCNWSPDGEWIAFASDRD 579
I + S R G Y+ D E G L GP + P+G + +++R
Sbjct: 221 ITYVSFRDGRATSYLYDLETGRQEAL--FDSGPSLASEGQSLSARFHPNGRELVVSAERH 278
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ +++ LR+L + P ++PDG+ +VF+S GG S
Sbjct: 279 S----GHDLFKFDLRSRTLRQL--TTHPADDVEPSYAPDGEQVVFSSSRGGQS------- 325
Query: 640 HQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+++ + DG+D +R+T TP W PR
Sbjct: 326 -------QLYVMNADGTDPQRITFGEGRYTTPVWSPR 355
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 352 FDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411
FDL +LT + + P +PD +V + RGG + QL + N
Sbjct: 286 FDLRSRTLRQLT---THPADDVEPSYAPDGEQVVFSSSRGGQS------QLYVMNADGTD 336
Query: 412 PDISLFRFDGSF--PSFSPKGDRIAFV-EFPGVY---VVNSDGSNRRQVYFKNAF--STV 463
P F +G + P +SP+GD IAF + G + VV +DGS ++ ++ F +
Sbjct: 337 PQRITFG-EGRYTTPVWSPRGDLIAFTKQRSGQFMLGVVAADGSGEERILYEGYFVDTPA 395
Query: 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
W P +++T G + E + I SI D+ G + +RRL T G+ + P+ SP
Sbjct: 396 WSPNGRVLLFTRG--DRTREGTTYSIWSI---DLAGFN-LRRLPTQGEASD-PAWSP 445
>gi|118581723|ref|YP_902973.1| WD40 domain-containing protein [Pelobacter propionicus DSM 2379]
gi|118504433|gb|ABL00916.1| WD-40 repeat-containing protein [Pelobacter propionicus DSM 2379]
Length = 435
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 148/354 (41%), Gaps = 69/354 (19%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFIS--PDSSRVGYHKCRGGSTREDGNNQLLLE 405
LFDL K + R++ KT L F D + RG T +
Sbjct: 126 EFRLFDLANRKMMTARRYLG-KTKDLRRFAHSFADEILLAMTGERGCFT-----THIAFV 179
Query: 406 NIKSPLPDISLFRFDGS-------------FPSFSPKGDRIAFVEF----PGVYV----- 443
+ +S +I++ +DG P FSP G I F + P +Y
Sbjct: 180 STRSGNKEIAIMDWDGHDTRQLTRNHSINLNPDFSPNGREIIFTSYKRHNPDLYRRPLSS 239
Query: 444 -VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502
V S+R + A+S D R A+ + G +SE+ I+ DG S
Sbjct: 240 PVEVAVSHREGLNITGAWSP--DGSRIALALSKDG------NSEIYTIA-----RDGSSP 286
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
VR LT++ P+ SP+G I F S R G ++IM+A +G G+ RLT +
Sbjct: 287 VR-LTSHPAIEISPTWSPNGSQIAFVSDRLGKPQIFIMNA---DGTGVRRLTTNGGYNVN 342
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSP G+ IA+A G F+++ I+ NG+ +L SGS + +P +SPDG+ I
Sbjct: 343 PRWSPKGDKIAYARME----GGGFQIHTINVNGSDDTQLTSSGS---SENPAWSPDGRLI 395
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
F+ G EI+ ++ DGS R+++ PAW PR
Sbjct: 396 AFSGRRGSGD--------------EIYVMRADGSGETRVSKVGGRSTQPAWQPR 435
>gi|349687686|ref|ZP_08898828.1| translocation protein TolB [Gluconacetobacter oboediens 174Bp2]
Length = 455
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P +AF+ + P VY+ N + +R + + +F+ + P +VV +
Sbjct: 224 PRFNPANSELAFMSYANYRPRVYLFNLNTGQQRLLGDFSGISFAPRFAPDGRSVVLS--- 280
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ S DI ++++ + A R++T++G + PS SPDG IVF S R G L
Sbjct: 281 ---VTRGSGSDIYTVDLATM----ARRQITSSGAIDTSPSYSPDGSQIVFNSDRGGSPQL 333
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G WSP G+ IAF+ +GSF + ++ P+GTG
Sbjct: 334 YIMSAAGGDA---KRISYGHGHYGSPVWSPRGDLIAFS----RIANGSFSLGVMAPDGTG 386
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 387 ERILTQGFT---VESPTFCPNGRVLAF 410
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 489 IISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+ + + D DG + R TNG+ P +P + F S +Y+ + G+
Sbjct: 198 VTRLAIMDQDGADS--RYLTNGQWLTLTPRFNPANSELAFMSYANYRPRVYLFNLNTGQ- 254
Query: 548 YGLHRLTEGPWSDT--MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
RL G +S ++PDG + + R GSGS ++Y + R++ SG
Sbjct: 255 ---QRLL-GDFSGISFAPRFAPDGRSVVLSVTR---GSGS-DIYTVDLATMARRQITSSG 306
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+ P +SPDG IVF SD GG +P +++ + G D KR++
Sbjct: 307 AI--DTSPSYSPDGSQIVFNSDRGG-------SP-------QLYIMSAAGGDAKRISYGH 350
Query: 666 FEDGTPAWGPR 676
G+P W PR
Sbjct: 351 GHYGSPVWSPR 361
>gi|146276614|ref|YP_001166773.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17025]
gi|166229985|sp|A4WQ04.1|TOLB_RHOS5 RecName: Full=Protein TolB; Flags: Precursor
gi|145554855|gb|ABP69468.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 444
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 37/258 (14%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P FSP GDRI F + S G R +Y + S + E + P FA +
Sbjct: 215 PRFSPTGDRILFTSY-------STGFPR--IYLMDVGSLATRSLAEQPGTMTFAPRFAPD 265
Query: 484 SSEVDII-----SINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYKNL 537
V + ++ +D S RR TN + PS SPDG IVF S R+G + L
Sbjct: 266 GRTVAFSLEQGGNTDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 326 YIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGSE 378
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L S P ++P+G+ ++FT + G +P ++ + + G +
Sbjct: 379 ERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGRN 424
Query: 658 LKRLTQNSFEDGTPAWGP 675
LK++ S PAW P
Sbjct: 425 LKKVPL-SVPASDPAWSP 441
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 192 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDV---GSLATR 247
Query: 552 RLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L E P + T ++PDG +AF+ ++ G+ ++Y + R+L S S A
Sbjct: 248 SLAEQPGTMTFAPRFAPDGRTVAFSLEQ----GGNTDIYTLDTASGTRRQLTNSPSIETA 303
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF SD G +++ + G + +R++ + GT
Sbjct: 304 --PSYSPDGSQIVFESDRSGGQ--------------QLYIMPAGGGEPRRISNGAGRYGT 347
Query: 671 PAWGPR 676
P W PR
Sbjct: 348 PVWSPR 353
>gi|114771186|ref|ZP_01448606.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2255]
gi|114548111|gb|EAU50998.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2255]
Length = 441
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 40/257 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P FSP + I + + P VY++N D N+R + + F+ + P VV +
Sbjct: 213 PRFSPNNEEIVYTSYETGVPKVYLMNVDTLNKRVLDDQPGMTFAPRFSPDGRNVVMS--- 269
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
++ DI S+ ++ RLT+ + PS SPDGK IVF S R G + +
Sbjct: 270 ---LTDRGNTDIYSVVLES----RRKTRLTSGPSIDTAPSFSPDGKQIVFESDRGGRQQI 322
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM + GG+ R++ G S WSP G+ IAF G F + ++ +G+
Sbjct: 323 YIMSSSGGDA---TRISFGKGSYGTPVWSPRGDMIAFT----KISQGRFHIGVMRTDGSN 375
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L S P +SP+G+ I+F + G + P EIF + + G +
Sbjct: 376 ERLLTAS---FLDEGPTWSPNGRVIMFFRESAGTNGAP-----------EIFSVDVTGRN 421
Query: 658 LKRLTQNSFEDGT-PAW 673
LKR+ + ++G+ P+W
Sbjct: 422 LKRV--KTIQNGSDPSW 436
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VVY S GP+ A + + + D DG ++ R LT + P SP+ + IV+ S
Sbjct: 174 VVYISEQGPKNARKKR------LTIMDYDGANS-RFLTDDNDIVLAPRFSPNNEEIVYTS 226
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA-SDRDNPGSGSFEM 588
TG +Y+M+ + L + P +SPDG + + +DR G+ ++
Sbjct: 227 YETGVPKVYLMNV---DTLNKRVLDDQPGMTFAPRFSPDGRNVVMSLTDR-----GNTDI 278
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
Y + +L S A P FSPDGK IVF SD GG +I
Sbjct: 279 YSVVLESRRKTRLTSGPSIDTA--PSFSPDGKQIVFESDRGG--------------RQQI 322
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ + G D R++ GTP W PR
Sbjct: 323 YIMSSSGGDATRISFGKGSYGTPVWSPR 350
>gi|258545747|ref|ZP_05705981.1| TolB protein [Cardiobacterium hominis ATCC 15826]
gi|258518992|gb|EEV87851.1| TolB protein [Cardiobacterium hominis ATCC 15826]
Length = 425
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 44/234 (18%)
Query: 413 DISLFRFDGSFPSFSPKGDRIAFVEFPG---------VYVVNSDGSNRRQVYFKNA--FS 461
D L+R G F G ++A+V G + V + DG+NRR++Y N S
Sbjct: 140 DWILYRLTGKRGVF---GTQLAYVLEQGGAKGARRYSLLVSDVDGANRREIYSSNEPILS 196
Query: 462 TVWDPVREAVVYTSGGPEFASESSEVDIISIN-----VDDVDGVSAVRRLTTNGKNNAFP 516
W P +AV + + +A+ ++V I +I V DG+S+ P
Sbjct: 197 PSWAPNGQAVAFVT----YANHHAQVVIQNIGGGSRVVAQGDGISSA------------P 240
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+ SPDG ++ F + ++Y+++ G RLT+ DT +SPDG +I F S
Sbjct: 241 AFSPDGNYLAFVQSENNNPDIYLLNLASGA---KSRLTDHAAIDTEPAFSPDGNYIYFTS 297
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
DR SGS ++Y + NG G +++ SGS AN SPDG S+V T GG
Sbjct: 298 DR----SGSPQIYRMSRNGGGAERVV-SGSGYSANSD-LSPDGSSLVLTRQSGG 345
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 80/304 (26%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
L+P +P+ V + T + + Q++++NI ++ S P+FSP G+
Sbjct: 195 LSPSWAPNGQAVAF------VTYANHHAQVVIQNIGGGSRVVAQGDGISSAPAFSPDGNY 248
Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
+AFV+ SE++ DI +
Sbjct: 249 LAFVQ--------------------------------------------SENNNPDIYLL 264
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
N+ A RLT + + P+ SPDG +I F S R+G +Y M GG G R
Sbjct: 265 NL----ASGAKSRLTDHAAIDTEPAFSPDGNYIYFTSDRSGSPQIYRMSRNGG---GAER 317
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
+ G + SPDG + R + G Y + K + ++GR +
Sbjct: 318 VVSGSGYSANSDLSPDGSSLVLT--RQSGGGYQIGTYDL------ASKRFDALTSGRLDE 369
Query: 613 -PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
F+P+G+ I++ + GG S + I G + L+ ++ P
Sbjct: 370 GASFAPNGQLIIYATKEGGRSVLKV--------------INSKGGVAQTLSDSNGRLRDP 415
Query: 672 AWGP 675
AWGP
Sbjct: 416 AWGP 419
>gi|347760559|ref|YP_004868120.1| secretion system type I outer membrane protein [Gluconacetobacter
xylinus NBRC 3288]
gi|347579529|dbj|BAK83750.1| secretion system type I outer membrane protein [Gluconacetobacter
xylinus NBRC 3288]
Length = 456
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 30/209 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVY--TS 475
P F+P +AF+ + P VY+ N + +R + + +F+ + P +V+ T
Sbjct: 225 PRFNPANSELAFMSYANYRPRVYLFNLNTGQQRLLGDFSGISFAPRFSPDGRSVILSVTR 284
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
GG S+ VD+ S++ R+LT +G + PS SPDG IVF S R G
Sbjct: 285 GG---GSDIYLVDLASMSR---------RQLTASGAIDTSPSFSPDGSQIVFNSDRGGSP 332
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LY+M A GGE R++ G WSP G+ IAF+ +GSF + ++ P+G
Sbjct: 333 QLYVMSAAGGEA---KRISYGHGQYGSPVWSPRGDLIAFS----RIANGSFSLGVMAPDG 385
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
TG R L Q + P F P+G+ + F
Sbjct: 386 TGERILTQGFT---VESPTFCPNGRVLAF 411
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + R TNG+ P +P + F S +Y+ + G+
Sbjct: 202 LAIMDQDGADS--RYLTNGQWLTLTPRFNPANSELAFMSYANYRPRVYLFNLNTGQ---- 255
Query: 551 HRLTEGPWSDT--MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RL G +S +SPDG + + R G GS ++YL+ R+L SG+
Sbjct: 256 QRLL-GDFSGISFAPRFSPDGRSVILSVTR---GGGS-DIYLVDLASMSRRQLTASGAID 310
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P FSPDG IVF SD GG +P +++ + G + KR++ +
Sbjct: 311 --TSPSFSPDGSQIVFNSDRGG-------SP-------QLYVMSAAGGEAKRISYGHGQY 354
Query: 669 GTPAWGPR 676
G+P W PR
Sbjct: 355 GSPVWSPR 362
>gi|452752921|ref|ZP_21952660.1| TolB protein precursor [alpha proteobacterium JLT2015]
gi|451959743|gb|EMD82160.1| TolB protein precursor [alpha proteobacterium JLT2015]
Length = 446
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 45/265 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKN-AFSTVWDPVREAVVYTSGG 477
P F+P +A++ + P +Y+ + + GS R F N +F+ + P +V++
Sbjct: 219 PRFAPNQQTVAYLSYAQNRPRIYIYDIASGSQRLIGDFPNMSFAPRFSPDGSTLVFSQ-- 276
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + DI +NV+ + V RLT+ + PS SPDG+ IVF S R G + L
Sbjct: 277 ----ARAGNTDIYKMNVNGGN----VVRLTSGPGIDTAPSYSPDGRRIVFESDRGGTQQL 328
Query: 538 YIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
Y+M+A+G G R++ EG T WSP G+ IAF G G F + ++ P+G
Sbjct: 329 YVMNADGS---GQQRISFGEGARYGTPV-WSPRGDLIAFT----KIGGGKFRIGVMRPDG 380
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+G R L A + P +SP+G+ I+F G A ++ + L G
Sbjct: 381 SGERLLTD---AWQDEGPTWSPNGRVIMFFRSRRGGGA-------------DLHSVDLTG 424
Query: 656 SDLKRLTQNSFEDGTPAWGPRFIRP 680
+ +R+ E PAW P +RP
Sbjct: 425 INERRI-PTPLEGSDPAWSP--LRP 446
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 42/236 (17%)
Query: 323 FTPATSPGNN--KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
TP +P +++ A RP I ++D+ + F P SPD
Sbjct: 217 LTPRFAPNQQTVAYLSYAQNRP-----RIYIYDIASGSQRLIGDF---PNMSFAPRFSPD 268
Query: 381 SSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S + + + R G+T + + N ++ P D + PS+SP G RI F
Sbjct: 269 GSTLVFSQARAGNTDIYKMNVNGGNVVRLTSGPGIDTA--------PSYSPDGRRIVFES 320
Query: 438 FPG----VYVVNSDGSNRRQVYFKNAF---STVWDPVREAVVYTS-GGPEFASESSEVDI 489
G +YV+N+DGS ++++ F + VW P + + +T GG +F
Sbjct: 321 DRGGTQQLYVMNADGSGQQRISFGEGARYGTPVWSPRGDLIAFTKIGGGKF--------- 371
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV-FRSTRTGYKNLYIMDAEG 544
I V DG RL T+ + P+ SP+G+ I+ FRS R G +L+ +D G
Sbjct: 372 -RIGVMRPDGSG--ERLLTDAWQDEGPTWSPNGRVIMFFRSRRGGGADLHSVDLTG 424
>gi|39934195|ref|NP_946471.1| translocation protein TolB [Rhodopseudomonas palustris CGA009]
gi|192289721|ref|YP_001990326.1| translocation protein TolB [Rhodopseudomonas palustris TIE-1]
gi|67461966|sp|Q6NAR1.1|TOLB_RHOPA RecName: Full=Protein TolB; Flags: Precursor
gi|39648043|emb|CAE26563.1| putative tolB protein precursor, periplasmic protein involved in
the tonb-independent uptake of group A colicins
[Rhodopseudomonas palustris CGA009]
gi|192283470|gb|ACE99850.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas
palustris TIE-1]
Length = 444
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 217 PRFSPTNQEITYMEFGQGEPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQRIIMS--- 273
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ A RLT + PS +PDG I F S R G +
Sbjct: 274 ---LQQGGNSNLFVMDLRS----KATTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQI 326
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 327 YIMPASGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 379
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +A P +F + + G
Sbjct: 380 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLFTVDVSGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 424 NELRVPTPGYAS-DPAWSP 441
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES D + + + D DG + VR LT P SP + I + G +
Sbjct: 180 FIDESGPADRRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPTNQEITYMEFGQGEPRV 238
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 239 YLFNVETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLFVMDLRSKA 291
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P ++PDG I F SD GG +P +I+ + G
Sbjct: 292 TTRLTDTPAI--DTSPSYAPDGSRICFESDRGG------------KP--QIYIMPASGGQ 335
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 336 AQRI---SFGDGSYSTPVWSPR 354
>gi|193212307|ref|YP_001998260.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Chlorobaculum parvum NCIB 8327]
gi|193085784|gb|ACF11060.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum
parvum NCIB 8327]
Length = 434
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 124/286 (43%), Gaps = 49/286 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG N L N KS ISL PS SP G +A+ +F P +Y+ N S GS
Sbjct: 191 DGTNIRQLTNTKS----ISLT------PSVSPDGRFLAWTDFSSGRPDLYIKNLSTGSTV 240
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
S W P T + E S+ D+ I D + RRLT
Sbjct: 241 SVKKQGVCISPAWRPGTNECATT-----LSYEGSQ-DLYLIRADG----TVARRLTRGHS 290
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
PS SPDG + F STR G ++I D G + RLT +T +WSP G+
Sbjct: 291 IEVSPSFSPDGSKMAFVSTREGPPQIFIQDLSSGS---VRRLTYSGTYNTQPSWSPSGDK 347
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGG 630
I ++S + N G +++I+ +G+ L+Q S R N +P +SPDG IVF+S G
Sbjct: 348 ILYSSLQKN---GEINIFMINVDGS---NLLQLTSGARNNEYPSWSPDGSMIVFSSTRAG 401
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+++ + +DG++ + L E P+W R
Sbjct: 402 SR--------------KLYVMNVDGTNQRPLLNMKGEQQQPSWSIR 433
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 40/282 (14%)
Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY 235
G +++VS T +Y + R+LT +P+VSP G++ A +
Sbjct: 170 GTKMVFVSNS-------TGQKEIYMCDFDGTNIRQLTNTKSISLTPSVSPDGRFLAWTDF 222
Query: 236 GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVY 295
+ D ++ LST + + + G + + W +E + +D +
Sbjct: 223 SSGRPDLYIKNLSTGSTVSVKKQG-----VCISPAWRPGTNECATTLSYEGSQDLY---- 273
Query: 296 KVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV 355
L+ + +R+T +P+ SP +K V+TR I + DL
Sbjct: 274 --------LIRADGTVARRLTRGHSIEVSPSFSPDGSKMAFVSTREGPP---QIFIQDLS 322
Query: 356 KNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDI 414
+ R T++ P SP ++ Y S +++G + + N+ S L +
Sbjct: 323 SG---SVRRLTYSGTYNTQPSWSPSGDKILYS-----SLQKNGEINIFMINVDGSNLLQL 374
Query: 415 SLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
+ + +PS+SP G I F +YV+N DG+N+R
Sbjct: 375 TSGARNNEYPSWSPDGSMIVFSSTRAGSRKLYVMNVDGTNQR 416
>gi|189500640|ref|YP_001960110.1| WD40 domain-containing protein beta Propeller [Chlorobium
phaeobacteroides BS1]
gi|189496081|gb|ACE04629.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides
BS1]
Length = 444
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 33/239 (13%)
Query: 315 VTPPGLHAFTPATSPGNNK--FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
VT G A TPA S ++ ++ RP +++ DL K + +TR K
Sbjct: 209 VTRTGGLALTPALSSDGSQLAYLTYTRGRP-----DLQIKDLSKKTVVSVTR----KGVK 259
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGD 431
++P S+ + + DGN ++ L+ S + ++ R PSFSP G
Sbjct: 260 IDPAWRKGSTELAT------TFSFDGNQEIYLVRKNGSIVRRLTRDRGIDLSPSFSPDGR 313
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
+AFV P V++++ + + +++ FK ++T W PV + + +T+ ++
Sbjct: 314 YMAFVSSRHGLPQVFIMDLNSGSTKRLTFKGKYNTQPAWSPVNDKIAFTT-----MQKNG 368
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E+DI ++N D + +++LT + N PS SPDG IVF S+R G LY+M+A+G
Sbjct: 369 EIDIFTVNADG----TGLKQLTYRARQNEAPSWSPDGTMIVFSSSRGGASKLYVMNADG 423
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
S VRRLT + + PS SPDG+++ F S+R G ++IMD G RLT +
Sbjct: 291 SIVRRLTRDRGIDLSPSFSPDGRYMAFVSSRHGLPQVFIMDLNSGS---TKRLTFKGKYN 347
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T WSP + IAF + + N G +++ ++ +GTGL++L A P +SPDG
Sbjct: 348 TQPAWSPVNDKIAFTTMQKN---GEIDIFTVNADGTGLKQLTYRARQNEA--PSWSPDGT 402
Query: 621 SIVFTSDYGGIS 632
IVF+S GG S
Sbjct: 403 MIVFSSSRGGAS 414
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y++ G + RLT D ++SPDG ++AF S R G +++++
Sbjct: 279 GNQEIYLVRKNGSI---VRRLTRDRGIDLSPSFSPDGRYMAFVSSRH----GLPQVFIMD 331
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI--FK 650
N ++L G P +SP I FT+ Q GEI F
Sbjct: 332 LNSGSTKRLTFKGKYN--TQPAWSPVNDKIAFTT---------------MQKNGEIDIFT 374
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG+ LK+LT + ++ P+W P
Sbjct: 375 VNADGTGLKQLTYRARQNEAPSWSP 399
>gi|430762629|ref|YP_007218486.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430012253|gb|AGA35005.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 429
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 151/349 (43%), Gaps = 69/349 (19%)
Query: 333 KFIAVATRRPTSSYRHIE--LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
+++ + +RP IE +FD++ N+ + R P PD R G H+
Sbjct: 99 EYLVIGRKRPEQGQILIEFHVFDVLANQRLGGFRIPVP----------PDMMRRGAHRV- 147
Query: 391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN 450
+ ++ E I D F ++ + +GD+ F + V +SDG+N
Sbjct: 148 ---------SDIVYEEITG---DKGAFSARIAYVGVAGEGDQRRFT----LEVADSDGAN 191
Query: 451 RRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
R ++ + S W P +VY S F + SEV NV+ A R+
Sbjct: 192 PRTLFRSSEPLMSPDWSPDGRDLVYVS----FENRRSEV--FRQNVE----TGARERIAA 241
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
N+ P SPDG+ I +R G N+Y+++ GE L + DT WSPD
Sbjct: 242 FKGINSAPVWSPDGRRIALTLSREGTANIYVLELASGE---LTPVVRSNAIDTEPAWSPD 298
Query: 569 GEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT-S 626
G+ + F SDR +GS ++Y + P GT R ++ SAG P SPDGKS+V+ +
Sbjct: 299 GDSLYFTSDR----AGSPQVYQVRLPGGTPQRLTFEATSAG---APTVSPDGKSVVYVHA 351
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GG+ + ++ LD + LT+ + D +P++ P
Sbjct: 352 GDGGL---------------RLARLDLDSRRVTLLTRGRY-DKSPSFAP 384
>gi|126737227|ref|ZP_01752962.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6]
gi|126721812|gb|EBA18515.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6]
Length = 445
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVY--T 474
P FSP GDR+ + FP ++V++ RR + F+ + P VVY T
Sbjct: 216 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSADQGIMTFAPRFAPDGRTVVYSQT 275
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
+GG D+ ++++ + + +RLT+ PS SPDG IVF S R+G
Sbjct: 276 AGG--------NTDLFTMDIAN----GSRKRLTSAPSIETAPSFSPDGSQIVFESDRSGS 323
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+ LY+M A GGE R++ G WSP G+ IAF G F + ++ +
Sbjct: 324 QQLYVMPASGGEA---RRISFGKGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRTD 376
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ R L S P +SP+G+ I+FT + G + + ++ + +
Sbjct: 377 GSEERLLTAS---FLDEGPSWSPNGRVIMFTRETQGANGRAL-----------LYSVDIL 422
Query: 655 GSDLKRL-TQNSFEDGTPAWGP 675
G +LK + T + D PAW P
Sbjct: 423 GRNLKPVRTPDGASD--PAWSP 442
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D +
Sbjct: 193 LAIMDYDGAN-VQYLTDSSALVLAPRFSPTGDRVLYTSYESGFPQIHVLDVGR-----VQ 246
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R M ++PDG + ++ G+ +++ + ++L + S
Sbjct: 247 RRVLSADQGIMTFAPRFAPDGRTVVYS----QTAGGNTDLFTMDIANGSRKRLTSAPSIE 302
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
A P FSPDG IVF SD G +++ + G + +R++
Sbjct: 303 TA--PSFSPDGSQIVFESDRSGSQ--------------QLYVMPASGGEARRISFGKGRY 346
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 347 GTPVWSPR 354
>gi|444918916|ref|ZP_21238970.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
gi|444709199|gb|ELW50222.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
Length = 429
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 23/176 (13%)
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFD-GSFPSFSPKGDRIA 434
SPD RV Y +D + Q+ + N ++ RF + P++SP G RIA
Sbjct: 248 FSPDGKRVAYALA------DDESAQIWVANANGEGARQLTDTRFGINTSPAWSPDGKRIA 301
Query: 435 FVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVD 488
FV P VYV+N+DGS R++ F+ ++ W P + + +T+ E + D
Sbjct: 302 FVSNRGGSPQVYVMNADGSAVRRLTFQGNYNQTPNWSPRGDLIAFTA-----RDERNAFD 356
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ +++VD + RLT + NN PS SP+G+ ++F STR G L++M AEG
Sbjct: 357 LFTVHVD----TGKISRLTQDQANNEEPSFSPNGRLVLFTSTRNGPSQLFVMTAEG 408
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 43/261 (16%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ P G ++ + + P +YV S G R + +T + ++ G
Sbjct: 202 LPALGPDG-QLGYTSYQQGKPDLYVRKSGGDTIRLKTNEGQMAT-------GIAFSPDGK 253
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A ++ + I V + +G A + T N P+ SPDGK I F S R G +Y
Sbjct: 254 RVAYALADDESAQIWVANANGEGARQLTDTRFGINTSPAWSPDGKRIAFVSNRGGSPQVY 313
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
+M+A+G + RLT +G ++ T NWSP G+ IAF A D N +F+++ +H +
Sbjct: 314 VMNADGS---AVRRLTFQGNYNQT-PNWSPRGDLIAFTARDERN----AFDLFTVHVDTG 365
Query: 597 GLRKLIQSGSAGRANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+ +L Q +AN+ P FSP+G+ ++FTS G S ++F + +
Sbjct: 366 KISRLTQD----QANNEEPSFSPNGRLVLFTSTRNGPS--------------QLFVMTAE 407
Query: 655 GSD-LKRLTQNSFEDGTPAWG 674
G++ L Q+ TP WG
Sbjct: 408 GNNPLPLPVQDKAAITTPDWG 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG +A R T G N P++ PDG+ + + S + G +LY+ + GG+ L +
Sbjct: 183 VADWDGRNA--RQVTQGGINLLPALGPDGQ-LGYTSYQQGKPDLYVRKS-GGDTIRL-KT 237
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613
EG + T +SPDG+ +A+A D S ++++ + NG G R+L + G P
Sbjct: 238 NEGQMA-TGIAFSPDGKRVAYALADDE----SAQIWVANANGEGARQLTDT-RFGINTSP 291
Query: 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+SPDGK I F S+ GG +P +++ + DGS ++RLT + TP W
Sbjct: 292 AWSPDGKRIAFVSNRGG-------SP-------QVYVMNADGSAVRRLTFQGNYNQTPNW 337
Query: 674 GPR 676
PR
Sbjct: 338 SPR 340
>gi|159043660|ref|YP_001532454.1| translocation protein TolB [Dinoroseobacter shibae DFL 12]
gi|189035981|sp|A8LHQ6.1|TOLB_DINSH RecName: Full=Protein TolB; Flags: Precursor
gi|157911420|gb|ABV92853.1| Tol-Pal system beta propeller repeat TolB [Dinoroseobacter shibae
DFL 12]
Length = 446
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 48/264 (18%)
Query: 424 PSFSPKGDRIAFVEFP---------GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVY- 473
P FSP GDR+ + + V V S G Q + +F+ + P +VV+
Sbjct: 216 PRFSPTGDRVLYTSYATGRPQITLLDVNSVRSQGLGSAQ-GGEMSFAPRFSPDGRSVVFS 274
Query: 474 -TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
T+GG DI ++ A RLT PS SPDG+ IVF S R+
Sbjct: 275 LTNGG--------NSDIYRRDLSS----GAQTRLTATPAIETAPSFSPDGRQIVFESDRS 322
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + LY+M A GGE R++ GP WSP G+ IAF G F + ++
Sbjct: 323 GSQQLYVMSATGGEA---RRISFGPGRYGTPVWSPRGDLIAFTKQNQ----GRFHIGVMR 375
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+G+ R L S+ P +SP+G+ I+FT + G P ++ +
Sbjct: 376 TDGSEERLLT---SSFLDESPTWSPNGRVIMFTRETSGAGGAP-----------SLYSVD 421
Query: 653 LDGSDLKRL-TQNSFEDGTPAWGP 675
+ G +L+R+ T + D PAW P
Sbjct: 422 ISGRNLRRVPTPGAASD--PAWSP 443
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S TG + ++D GL
Sbjct: 193 LAIMDYDGAN-VQFLTDSSAIVLAPRFSPTGDRVLYTSYATGRPQITLLDVNSVRSQGLG 251
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-- 609
G S +SPDG + F+ G+ ++Y R+ + SG+ R
Sbjct: 252 SAQGGEMS-FAPRFSPDGRSVVFSLTN----GGNSDIY---------RRDLSSGAQTRLT 297
Query: 610 -----ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
P FSPDG+ IVF SD G +++ + G + +R++
Sbjct: 298 ATPAIETAPSFSPDGRQIVFESDRSGSQ--------------QLYVMSATGGEARRISFG 343
Query: 665 SFEDGTPAWGPR 676
GTP W PR
Sbjct: 344 PGRYGTPVWSPR 355
>gi|226226607|ref|YP_002760713.1| hypothetical protein GAU_1201 [Gemmatimonas aurantiaca T-27]
gi|226089798|dbj|BAH38243.1| hypothetical protein GAU_1201 [Gemmatimonas aurantiaca T-27]
Length = 997
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 22/226 (9%)
Query: 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
DG F ++ G + FP +Y+ N++ R T +P E + + P
Sbjct: 328 DGKFITYIGYGSLLRGEVFPEMYLANAETGKR----ITRLVKTTTNPDFEQLRFIYSQPS 383
Query: 480 FASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
F+ + ++ + + DV + V+R+ PS SPDG+ +VF R
Sbjct: 384 FSLDGKQLAFTGQRGGRDVLYIMDVKSRNIVKRIDLELDQVLSPSFSPDGRKVVFSGMRH 443
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR------DNPGSGSF 586
G +LY++ + G +L + + D M WSPDG+ IAF SDR D G++
Sbjct: 444 GSSDLYVVSLDAP---GYTQLMKDQYGDLMPQWSPDGKTIAFISDRGPDTDLDILKIGAW 500
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
++ + I G GRA +P ++PDGKS+ + +D GI+
Sbjct: 501 KVVTFDLETQQM--TILPGQGGRAINPQWAPDGKSLAYVTDRTGIA 544
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 35/246 (14%)
Query: 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406
R L N E RF+ + P S D ++ + RGG + L + +
Sbjct: 359 RITRLVKTTTNPDFEQLRFI-----YSQPSFSLDGKQLAFTGQRGG------RDVLYIMD 407
Query: 407 IKSP--LPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAF 460
+KS + I L PSFSP G ++ F +YVV+ D Q+ K+ +
Sbjct: 408 VKSRNIVKRIDLELDQVLSPSFSPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQL-MKDQY 466
Query: 461 STV---WDPVREAVVYTSG-GPEFASESSEVDIISINVDDVDG----VSAVRRLTTNGKN 512
+ W P + + + S GP+ +++DI+ I V + L G
Sbjct: 467 GDLMPQWSPDGKTIAFISDRGPD-----TDLDILKIGAWKVVTFDLETQQMTILPGQGGR 521
Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR----LTEGPWSDTMCNWSPD 568
P +PDGK + + + RTG N+++ D + E Y L +T +W+ +
Sbjct: 522 AINPQWAPDGKSLAYVTDRTGIANIFLYDFDAKEHYQLTNVAGAVTAVAEQSPAISWARE 581
Query: 569 GEWIAF 574
+ +AF
Sbjct: 582 ADIMAF 587
>gi|385810460|ref|YP_005846856.1| TolB protein [Ignavibacterium album JCM 16511]
gi|383802508|gb|AFH49588.1| TolB protein [Ignavibacterium album JCM 16511]
Length = 349
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 48/290 (16%)
Query: 415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVV 472
+ F FDG F D + + ++ +N DGS+++ V +T + P E ++
Sbjct: 49 AYFSFDGKKLIFQATVDTLKCDQ---IFTMNIDGSDKKMVSTGKGRTTCAYFYPDGEKIL 105
Query: 473 YTSGG--------PEFASES---SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
Y S P S+ D I + D DG + V+ LT +GK +A ++SP
Sbjct: 106 YASTHHFDENCPPPPDRSKGYVWKLYDSYDIFMADKDGKNLVQ-LTNSGKYDAEATISPK 164
Query: 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
G I+F STR LY+M+ +G RLT D +S DG I F + R
Sbjct: 165 GDKIIFTSTRDNDPELYVMNLDGSNQ---TRLTFEKGYDGGAFFSADGSKIVFRASRPKT 221
Query: 582 GSG----------------SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
+ + E++++ +G ++++ G A A P+F PDGK I+F+
Sbjct: 222 EAQLADYDELVKFGYVRPTALEIFVMDSDGKNMKQVTNLGKASFA--PFFHPDGKRIIFS 279
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S+YG + + +F I +DG+ LK++T N DG P + P
Sbjct: 280 SNYGSENGRDFN----------LFMINIDGTGLKQITFNPTFDGFPMFSP 319
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 25/177 (14%)
Query: 425 SFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGGP 478
+ SPKGD+I F P +YV+N DGSN+ ++ F+ + + +V+ + P
Sbjct: 160 TISPKGDKIIFTSTRDNDPELYVMNLDGSNQTRLTFEKGYDGGAFFSADGSKIVFRASRP 219
Query: 479 EFASESSEVD-----------IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
+ ++ ++ D + I V D DG + ++++T GK + P PDGK I+F
Sbjct: 220 KTEAQLADYDELVKFGYVRPTALEIFVMDSDGKN-MKQVTNLGKASFAPFFHPDGKRIIF 278
Query: 528 RSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
S NL++++ +G GL ++T P D +SPDG+++ F S+R N
Sbjct: 279 SSNYGSENGRDFNLFMINIDGT---GLKQITFNPTFDGFPMFSPDGKYLVFGSNRFN 332
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGP 557
+ +R LT G+N A S DGK ++F++T K ++ M+ +G + ++ G
Sbjct: 34 LKNIRMLTEVGEN-AEAYFSFDGKKLIFQATVDTLKCDQIFTMNIDGSDK---KMVSTGK 89
Query: 558 WSDTMCNWSPDGEWIAFAS----DRDNP-----GSG-------SFEMYLIHPNGTGLRKL 601
T + PDGE I +AS D + P G S+++++ +G L +L
Sbjct: 90 GRTTCAYFYPDGEKILYASTHHFDENCPPPPDRSKGYVWKLYDSYDIFMADKDGKNLVQL 149
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
SG SP G I+FTS P E++ + LDGS+ RL
Sbjct: 150 TNSGKYDA--EATISPKGDKIIFTS------------TRDNDP--ELYVMNLDGSNQTRL 193
Query: 662 TQNSFEDG 669
T FE G
Sbjct: 194 T---FEKG 198
>gi|77464240|ref|YP_353744.1| translocation protein TolB [Rhodobacter sphaeroides 2.4.1]
gi|126463082|ref|YP_001044196.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17029]
gi|332559129|ref|ZP_08413451.1| translocation protein TolB [Rhodobacter sphaeroides WS8N]
gi|429206213|ref|ZP_19197481.1| tolB protein precursor, periplasmic protein [Rhodobacter sp. AKP1]
gi|119371057|sp|Q3J041.1|TOLB_RHOS4 RecName: Full=Protein TolB; Flags: Precursor
gi|166229984|sp|A3PM58.1|TOLB_RHOS1 RecName: Full=Protein TolB; Flags: Precursor
gi|77388658|gb|ABA79843.1| Probable TolB protein precursor [Rhodobacter sphaeroides 2.4.1]
gi|126104746|gb|ABN77424.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC
17029]
gi|332276841|gb|EGJ22156.1| translocation protein TolB [Rhodobacter sphaeroides WS8N]
gi|428190934|gb|EKX59478.1| tolB protein precursor, periplasmic protein [Rhodobacter sp. AKP1]
Length = 444
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P FSP GDRI F FP +Y+++ R + + F+ + P V ++
Sbjct: 215 PRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFS-- 272
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI +++ G R+LT + PS SPDG IVF S R+G +
Sbjct: 273 ----LEQGGNTDIYTLDT----GSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 324
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 325 LYIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGS 377
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G +P ++ + + G
Sbjct: 378 EERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK++ S PAW P
Sbjct: 424 NLKKVPL-SVPASDPAWSP 441
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 192 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLA 250
Query: 543 ------------------------EGGE--------GYGLHR-LTEGPWSDTMCNWSPDG 569
+GG G G R LT P +T ++SPDG
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDG 310
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG ++Y I P G G + I +G AGR P +SP G I FT
Sbjct: 311 SQIVFESDR----SGGQQLY-IMPAGGGEPRRISNG-AGRYGTPVWSPRGDLIAFT---- 360
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+Q I ++ DGS+ +RL SF D P W P
Sbjct: 361 ----------KQHQGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 395
>gi|238507612|ref|XP_002385007.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|220688526|gb|EED44878.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
Length = 647
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 137/560 (24%), Positives = 221/560 (39%), Gaps = 101/560 (18%)
Query: 177 EYLIYVSTHENPG-----TPRTSWAA--------VYSTELKTGLTRRLT----------- 212
E L+ S+ E+ G + +W + V+ +LKTG R LT
Sbjct: 123 EKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTK 182
Query: 213 PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEML----STDIYIFLTR-DGTQRVKIVE 267
P G F P+ SP G++ A +S N W G + ++ +++ R DGT KI
Sbjct: 183 PNGY--FRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIAS 240
Query: 268 NGGW----PCWV-DESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVS----IQRVT 316
GW P W D S + F+ + E+ W + V + +VS + + IQ
Sbjct: 241 REGWSLGSPRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTN 300
Query: 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF 376
G+ + N ++ Y V N + +P
Sbjct: 301 GTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESSTGTVINGTMR------------SPS 348
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
SPD V Y K + + + + + S P+ +RF FP S +G R+A
Sbjct: 349 WSPDGKSVVYEKS-------EFEARPMEKKLYSWDPEWE-YRFTDVFPDLSQQG-RLAIT 399
Query: 437 EF----PGVYVVNSDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSG 476
+ + + DG ++ V+ AF W P E + + G
Sbjct: 400 QKQLGNSSIVTMRPDGLDQTLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAFGIG 459
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYK 535
F S ++ I+ D + + TNG NA FPS S DG+++V+R T +
Sbjct: 460 A-WFQSRATGKGYIARAKAD----GSYHEILTNGTINAGFPSYSLDGRYLVYRVWGTEF- 513
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
L IMD + LT D + +SPDG+ I F +F++ I P+G
Sbjct: 514 GLRIMDLTDKS---VRVLTTT--RDNLPFYSPDGQRIVFTR---RTSYTNFDVCTIRPDG 565
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ L+ L SG+ H ++ DG+ I++ S G E + +QPYG+IF + DG
Sbjct: 566 SDLKVLTSSGA--NDAHATWTADGR-ILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADG 622
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
S+ LT + +ED + P
Sbjct: 623 SNKTILTDSIWEDSMALYLP 642
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+YV N DGSN R++ N+ + + P + + +TS + D+ D
Sbjct: 65 LYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSE----RNGDGNSDLYRCRADG- 119
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEG 556
S + +L +SPD + + ST GY N+++MD + GE L L EG
Sbjct: 120 ---SGLEKLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNL-EG 175
Query: 557 PWSDTMC-------NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGTGL 598
D +WSPDGEWIAF+SDR+ G +Y+I P+GT
Sbjct: 176 VKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDF 235
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVF 624
RK I S P +SPDG I+F
Sbjct: 236 RK-IASREGWSLGSPRWSPDGSRIIF 260
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLH 551
V ++DG + + L N + + S SPDG+WI F S R G N LY A+G GL
Sbjct: 67 VANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRADGS---GLE 123
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+L + SPD +A+ S + + + M L L L G G
Sbjct: 124 KLVATSSVEDAGVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNL--EGVKGDPT 181
Query: 612 HP--YF----SPDGKSIVFTSDYGG-ISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQ 663
P YF SPDG+ I F+SD T ++ ++ I+ DG+D +++ ++
Sbjct: 182 KPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASR 241
Query: 664 NSFEDGTPAWGP 675
+ G+P W P
Sbjct: 242 EGWSLGSPRWSP 253
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 127/334 (38%), Gaps = 88/334 (26%)
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDG 421
P+TH +P V G S+ E DG+N+ L S RFD
Sbjct: 36 PRTHSARGLPAPGKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNS--------RFD- 86
Query: 422 SFPSFSPKGDRIAFV-EFPG-----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVY 473
SFSP G I F E G +Y +DGS ++ ++ + V P V +
Sbjct: 87 YHASFSPDGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAW 146
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-- 531
S + + +D+ + ++ + V+ T PS SPDG+WI F S R
Sbjct: 147 VSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNT 206
Query: 532 --------TGYKN-----LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF---- 574
TG+++ +Y++ +G + + EG WS WSPDG I F
Sbjct: 207 EWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIAS-REG-WSLGSPRWSPDGSRIIFYEIT 264
Query: 575 ------ASDRDNPGSGSFEMYLI----------HPNGTGLR------------KLIQSGS 606
A ++ S + ++ + H NGTG++ LI+ GS
Sbjct: 265 TENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGS 324
Query: 607 A----------------GRANHPYFSPDGKSIVF 624
+ G P +SPDGKS+V+
Sbjct: 325 SEGIHYTAESSTGTVINGTMRSPSWSPDGKSVVY 358
>gi|297183216|gb|ADI19356.1| periplasmic component of the tol biopolymer transport system
[uncultured Chloroflexi bacterium HF0500_03M05]
Length = 284
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 113/258 (43%), Gaps = 46/258 (17%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P +SP RIA++ G +YV+N++G+ ++V P E ++ G
Sbjct: 65 PQWSPNDIRIAYIAENGEETYLYVINANGTQPM------LLTSV--PGNEIGGWSPDGTS 116
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP----DGKWIVFRSTRTGYK 535
SE + I + + DGV+ RR T P SP D + I F S R G
Sbjct: 117 VVFAVSEGEEQGIYIRNPDGVNEFRRTDT-------PDFSPVWSTDSERIAFLSRRDGNP 169
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M+ +G + RLTE + +WSP+GE + F S+RD G+ E+Y+
Sbjct: 170 EIYVMNTDGSNQF---RLTETEALEYDISWSPNGERLLFVSERD----GNAEIYIAELES 222
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+L + + HP +SP+G I FTS EIF + DG
Sbjct: 223 DSQVRLTH--NEVKDEHPVWSPNGDKIAFTS--------------HLDADTEIFIMDSDG 266
Query: 656 SDLKRLTQNSFEDGTPAW 673
+ RLT N ED P+W
Sbjct: 267 DNQTRLTNNESEDTNPSW 284
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
L T+ N SPDG +VF + + +YI + +G + R T+ P D W
Sbjct: 98 LLTSVPGNEIGGWSPDGTSVVFAVSEGEEQGIYIRNPDGVNEF---RRTDTP--DFSPVW 152
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
S D E IAF S RD G+ E+Y+++ +G+ +L ++ +SP+G+ ++F
Sbjct: 153 STDSERIAFLSRRD----GNPEIYVMNTDGSNQFRLTET--EALEYDISWSPNGERLLFV 206
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S+ G EI+ +L+ RLT N +D P W P
Sbjct: 207 SERDG--------------NAEIYIAELESDSQVRLTHNEVKDEHPVWSP 242
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 51/224 (22%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG------GEGYG 549
D DG SA R LT + + P VS DGK + F S L +M+ G G
Sbjct: 2 DSDGTSA-RNLTKSAIDEFSPVVSSDGKLVAFLSGSGDNIALEVMEVSGTSRQVLASASG 60
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
HR + WSP+ IA+ ++ G ++ +Y+I+ NGT + ++ + G
Sbjct: 61 THRDPQ---------WSPNDIRIAYIAEN---GEETY-LYVINANGT--QPMLLTSVPGN 105
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG----------------------- 646
+ SPDG S+VF G I P +
Sbjct: 106 EIGGW-SPDGTSVVFAVSEGEEQGIYIRNPDGVNEFRRTDTPDFSPVWSTDSERIAFLSR 164
Query: 647 -----EIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
EI+ + DGS+ RLT+ + +W P R + V E
Sbjct: 165 RDGNPEIYVMNTDGSNQFRLTETEALEYDISWSPNGERLLFVSE 208
>gi|316932664|ref|YP_004107646.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Rhodopseudomonas palustris DX-1]
gi|315600378|gb|ADU42913.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas
palustris DX-1]
Length = 444
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 217 PRFSPTTQEITYMEFGQGEPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQKIIMS--- 273
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ A RLT + PS +PDG I F S R G +
Sbjct: 274 ---LQQGGNSNLFVMDLRS----KATTRLTDTPAIDTSPSYAPDGSRICFESDRGGRPQI 326
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 327 YIMPAGGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 379
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG A P +F + + G
Sbjct: 380 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-KAGP-----------SLFTVDVSGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 424 NELRVPTPGYAS-DPAWSP 441
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 30/198 (15%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S +E + + + D DG + VR LT P SP + I + G +Y+ +
Sbjct: 184 SGPAERRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPTTQEITYMEFGQGEPRVYLFN 242
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
E G+ + P +SPDG+ I + + G+ ++++ +L
Sbjct: 243 VETGQ---REIVGNFPGMSFAPRFSPDGQKIIMSLQQ----GGNSNLFVMDLRSKATTRL 295
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + P ++PDG I F SD GG +P +I+ + G +R+
Sbjct: 296 TDTPAI--DTSPSYAPDGSRICFESDRGG------------RP--QIYIMPAGGGQAQRI 339
Query: 662 TQNSFEDG---TPAWGPR 676
SF DG TP W PR
Sbjct: 340 ---SFGDGSYSTPVWSPR 354
>gi|197121110|ref|YP_002133061.1| TolB domain-containing protein [Anaeromyxobacter sp. K]
gi|226705865|sp|B4UDE1.1|TOLB_ANASK RecName: Full=Protein TolB; Flags: Precursor
gi|196170959|gb|ACG71932.1| TolB domain protein [Anaeromyxobacter sp. K]
Length = 434
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P G A SE ++ + V DGV A R+LT++
Sbjct: 239 PLGRHRNAFGGVYSP---------DGSRIAFTVSEGNVTDLWVMSADGVGA-RKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVSPDSGAINRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G HR G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRHRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGVGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>gi|85714380|ref|ZP_01045368.1| TolB [Nitrobacter sp. Nb-311A]
gi|85698827|gb|EAQ36696.1| TolB [Nitrobacter sp. Nb-311A]
Length = 441
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 214 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFAPRFAPDGQRIIMS--- 270
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 271 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDGARICFESDRGGKPQI 323
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + +I P+G+G
Sbjct: 324 YVMGASGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIIKPDGSG 376
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG ++ I + G
Sbjct: 377 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGGAGGP------------SLYTIDVSGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++ F PAW P
Sbjct: 421 NELKVPTPGFAS-DPAWSP 438
>gi|86139146|ref|ZP_01057716.1| translocation protein TolB precursor [Roseobacter sp. MED193]
gi|85823990|gb|EAQ44195.1| translocation protein TolB precursor [Roseobacter sp. MED193]
Length = 446
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + +F+ + P VVY+
Sbjct: 217 PRFSPTGDRVLYTSYESGFPQIHVLDVGKVQRRVLSADKGIMSFAPRFAPDGNTVVYSQ- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+E D+ ++++ A +RLT PS SPDG IVF S R+G
Sbjct: 276 -----AEGGNTDLYTMDI----ATGARQRLTRAPSIETAPSYSPDGSQIVFESDRSGTPQ 326
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 327 LYVMPATGGEA---RRISFGKGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRLDGS 379
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G + + ++ + + G
Sbjct: 380 EERLLTAS---FLDEGPSWSPNGRVIMFTRETQGANGRAL-----------LYSVDILGR 425
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D PAW P
Sbjct: 426 NLKPVRTPDGASD--PAWSP 443
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---------- 541
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D
Sbjct: 194 LAIMDYDG-AGVQYLTNSSALVLAPRFSPTGDRVLYTSYESGFPQIHVLDVGKVQRRVLS 252
Query: 542 -----------------------AEGG--EGYGL-------HRLTEGPWSDTMCNWSPDG 569
AEGG + Y + RLT P +T ++SPDG
Sbjct: 253 ADKGIMSFAPRFAPDGNTVVYSQAEGGNTDLYTMDIATGARQRLTRAPSIETAPSYSPDG 312
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG+ ++Y++ G R++ S GR P +SP G I FT
Sbjct: 313 SQIVFESDR----SGTPQLYVMPATGGEARRI--SFGKGRYGTPVWSPRGDLIAFT---- 362
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++LDGS+ +RL SF D P+W P
Sbjct: 363 ----------KQSKGRFHIGVMRLDGSE-ERLLTASFLDEGPSWSP 397
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 111/289 (38%), Gaps = 52/289 (17%)
Query: 281 FFHRKSEEDDWISVYKVILPQTG----------LVSTESVSIQRVTPPGLHAFTPATSPG 330
+ R + E + V + +TG ++ + +Q +T P SP
Sbjct: 163 IYSRITGESGYFDSRVVFVSETGPKNDRRKRLAIMDYDGAGVQYLTNSSALVLAPRFSPT 222
Query: 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
++ + + S + I + D+ K + L+ P +PD + V Y +
Sbjct: 223 GDRVLYTSYE---SGFPQIHVLDVGKVQRRVLS--ADKGIMSFAPRFAPDGNTVVYSQAE 277
Query: 391 GGSTR------EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPG 440
GG+T G Q L P I + PS+SP G +I F P
Sbjct: 278 GGNTDLYTMDIATGARQRLTR-----APSIE------TAPSYSPDGSQIVFESDRSGTPQ 326
Query: 441 VYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+YV+ + G R++ F K + T VW P + + +T I V +D
Sbjct: 327 LYVMPATGGEARRISFGKGRYGTPVWSPRGDLIAFT---------KQSKGRFHIGVMRLD 377
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR--TGYKNLYIMDAEG 544
G + RL T + PS SP+G+ I+F R T+ G LY +D G
Sbjct: 378 G--SEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRALLYSVDILG 424
>gi|339022588|ref|ZP_08646516.1| secretion system type I outer membrane protein TolB [Acetobacter
tropicalis NBRC 101654]
gi|338750402|dbj|GAA09820.1| secretion system type I outer membrane protein TolB [Acetobacter
tropicalis NBRC 101654]
Length = 454
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P FSP D++AF+ + P VY+ + GS R+Q+ + A F+ + P +VV +
Sbjct: 222 PRFSPVKDQVAFMSYANNRPRVYLFDL-GSGRQQILGEFAGISFAPRFSPDGRSVVLS-- 278
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + D+ +++ + R++T +G + PS SPDG IVF S R G
Sbjct: 279 ----VTRNGGSDLFVVDLAS----GSRRQITASGAIDTSPSYSPDGSQIVFNSDRGGSPQ 330
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GG G R++ G + WSP G+ IAF +GSF + +++P+GT
Sbjct: 331 LYIMSASGG---GARRISYGNGTYGSPVWSPRGDLIAFT----RIANGSFSLGVMNPDGT 383
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF 624
G R + + + P F P+G+ + +
Sbjct: 384 GERIMTEGFT---VESPSFCPNGRVLAY 408
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG +A R LT P SP + F S +Y+ D G
Sbjct: 199 LAIMDQDGANA-RMLTAGNWLTLTPRFSPVKDQVAFMSYANNRPRVYLFDLGSGR---QQ 254
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L E +SPDG + + R+ G +++++ R++ SG+
Sbjct: 255 ILGEFAGISFAPRFSPDGRSVVLSVTRN----GGSDLFVVDLASGSRRQITASGAI--DT 308
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG IVF SD GG +P +++ + G +R++ + G+P
Sbjct: 309 SPSYSPDGSQIVFNSDRGG-------SP-------QLYIMSASGGGARRISYGNGTYGSP 354
Query: 672 AWGPR 676
W PR
Sbjct: 355 VWSPR 359
>gi|237748799|ref|ZP_04579279.1| TolB [Oxalobacter formigenes OXCC13]
gi|229380161|gb|EEO30252.1| TolB [Oxalobacter formigenes OXCC13]
Length = 423
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 56/287 (19%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
DG N+L+ ++S P IS PS+SP G R+A+V F P VYV N R
Sbjct: 182 DGGNKLVA--LRSKEPIIS--------PSWSPDGTRVAYVSFEAKKPVVYVQNLVTRQRT 231
Query: 453 QV--YFKNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
V Y N + W P R AV + G ++V +S N A++++T
Sbjct: 232 MVANYKGNNSAPSWSPDGSRLAVALSKDG------YTQVYTVSANG------GALKQITQ 279
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
N P SPDG+WI F S R+G +Y + GG R+T + SPD
Sbjct: 280 TRSINTEPQFSPDGQWIYFTSDRSGGPQIYKVGVNGGN---PQRVTFHGNYNISPRVSPD 336
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ +A+ S R G +++YL+ ++L R P FSP+G+ I++ ++
Sbjct: 337 GKSLAYISRR-----GGYQLYLLDLTNGQEQRL---SDTSRDESPSFSPNGQFIMYATNG 388
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G G + + +DG +RL+ + + P+WGP
Sbjct: 389 G---------------RGALSVVSVDGRVKQRLSMKASDVREPSWGP 420
>gi|300786706|ref|YP_003766997.1| TolB-related protein [Amycolatopsis mediterranei U32]
gi|384150037|ref|YP_005532853.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|399538589|ref|YP_006551251.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|299796220|gb|ADJ46595.1| TolB-related protein [Amycolatopsis mediterranei U32]
gi|340528191|gb|AEK43396.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|398319359|gb|AFO78306.1| TolB-related protein [Amycolatopsis mediterranei S699]
Length = 1342
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 23/178 (12%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
DG +LT + + P++SPDG+ + F S RTG + L+++ G +G GL ++T GP
Sbjct: 106 DGAPTALQLTNDDAVDLHPALSPDGRTVAFASERTGSRKLFVI---GVDGRGLRQVTSGP 162
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+D +WSPDG +AF+S RD+P ++Y + +G +L +A P + P
Sbjct: 163 ATDDSPSWSPDGTRLAFSSTRDDPAG---DIYTVGVDGGTPARLTTDPAAD--TQPAWGP 217
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I FT+ ++ P G++ + G + R + + PAW P
Sbjct: 218 --ARIAFTT-------------TRFHPAGDVVLMAEAGGAVTRAVPDPGDSSEPAWSP 260
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 119/309 (38%), Gaps = 70/309 (22%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFS 427
L+P +SPD V + R GS + DG L + P D S PS+S
Sbjct: 122 LHPALSPDGRTVAFASERTGSRKLFVIGVDGRG--LRQVTSGPATDDS--------PSWS 171
Query: 428 PKGDRIAFV---EFPG--VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYT------ 474
P G R+AF + P +Y V DG ++ A T W P R A T
Sbjct: 172 PDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTDPAADTQPAWGPARIAFTTTRFHPAG 231
Query: 475 -------SGG--------PEFASESS----------------EVDIISINVDDVDGVSAV 503
+GG P +SE + D+ I + V +SA+
Sbjct: 232 DVVLMAEAGGAVTRAVPDPGDSSEPAWSPDGRLAFTTRAKDPSGDVRQIVGETVTDISAL 291
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM- 562
+ + P+ DG+ + +G +++ DA GG+ LT P +D
Sbjct: 292 KDI-----GETEPTFRSDGRPVFTELRASGTTDIWSADAAGGD---RRDLTNRPGADEFD 343
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRANHPYFSPDGKS 621
+S DG +A+ S + E+ + + +G+G R L + R HP +SPD +
Sbjct: 344 PAFSADGSQLAYTQGGRG-DSVATEIIVANADGSGPRPLTGPTDGTKRERHPAWSPDATA 402
Query: 622 IVFTSDYGG 630
I FT GG
Sbjct: 403 IAFTVTVGG 411
>gi|219847846|ref|YP_002462279.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485]
gi|219542105|gb|ACL23843.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM
9485]
Length = 629
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 129/310 (41%), Gaps = 75/310 (24%)
Query: 331 NNKFIAVATRRPTSSYRHIELFDLV------KNKFIELTR------------------FV 366
N + +AV +RR YR + L + V + TR +
Sbjct: 358 NRQMLAVDSRREQPVYRQVYLLNSVAASDGEQASAATATRISSVDMRDLWYYPGGPDELI 417
Query: 367 SPKTHHLNPFISPDSSRVGYHKCRGGS------TREDGNNQLLLENIKSPLPDISLFRFD 420
S + NP +SPD +R+ R + D N+ + + P
Sbjct: 418 SKTVNEFNPMVSPDGTRLLVISERVDRPDLMLWSIADTNSLTIPSRLTRDQPACHY---- 473
Query: 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
P++SP G RI +V + DG YF +Y S P +
Sbjct: 474 -ETPAWSPDGRRI-------YWVSDCDG------YF--------------AIY-SAEPSY 504
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
S +++ + +S +R+L+ N+ F VSPDGK I F S R G +Y+M
Sbjct: 505 RPYSLRNNLVGF----IAELSNIRKLSNQNANDRFARVSPDGKQIAFASDRDGNWEIYVM 560
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLR 599
+++G + RLT P +D WSPDG +AFASDRD G FE+Y+++ +GT +
Sbjct: 561 NSDGSN---VRRLTNNPATDDAPTWSPDGRQLAFASDRD----GDFEIYILNVSDGTITQ 613
Query: 600 KLIQSGSAGR 609
++ Q+ + R
Sbjct: 614 QVTQNTAQDR 623
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 36/202 (17%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGKWIVFRSTRTGYKNLYIMDAEG- 544
D++ ++ D + ++ RLT + + P+ SPDG+ I + S GY +Y +
Sbjct: 446 DLMLWSIADTNSLTIPSRLTRDQPACHYETPAWSPDGRRIYWVSDCDGYFAIYSAEPSYR 505
Query: 545 ------------GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
E + +L+ +D SPDG+ IAFASDRD G++E+Y+++
Sbjct: 506 PYSLRNNLVGFIAELSNIRKLSNQNANDRFARVSPDGKQIAFASDRD----GNWEIYVMN 561
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+G+ +R+L + + A P +SPDG+ + F SD G EI+ +
Sbjct: 562 SDGSNVRRLTNNPATDDA--PTWSPDGRQLAFASDRDGDF--------------EIYILN 605
Query: 653 L-DGSDLKRLTQNSFEDGTPAW 673
+ DG+ +++TQN+ +D P W
Sbjct: 606 VSDGTITQQVTQNTAQDRWPLW 627
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 95/246 (38%), Gaps = 57/246 (23%)
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV----DGVSAVRRLT 507
RQVY N+ V S G E AS ++ I S+++ D+ G + T
Sbjct: 374 RQVYLLNS------------VAASDG-EQASAATATRISSVDMRDLWYYPGGPDELISKT 420
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTEGPWSDTMCN-- 564
N N P VSPDG ++ S R +L + + RLT C+
Sbjct: 421 VNEFN---PMVSPDGTRLLVISERVDRPDLMLWSIADTNSLTIPSRLTR---DQPACHYE 474
Query: 565 ---WSPDGEWIAFASDRDN-----PGSGSFEMYLIHPNGTG-------LRKLIQSGSAGR 609
WSPDG I + SD D S+ Y + N G +RKL + R
Sbjct: 475 TPAWSPDGRRIYWVSDCDGYFAIYSAEPSYRPYSLRNNLVGFIAELSNIRKLSNQNANDR 534
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
SPDGK I F SD G EI+ + DGS+++RLT N D
Sbjct: 535 FAR--VSPDGKQIAFASDRDG--------------NWEIYVMNSDGSNVRRLTNNPATDD 578
Query: 670 TPAWGP 675
P W P
Sbjct: 579 APTWSP 584
>gi|221640124|ref|YP_002526386.1| translocation protein TolB [Rhodobacter sphaeroides KD131]
gi|221160905|gb|ACM01885.1| Protein tolB precursor [Rhodobacter sphaeroides KD131]
Length = 435
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P FSP GDRI F FP +Y+++ R + + F+ + P V ++
Sbjct: 206 PRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFS-- 263
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI +++ G R+LT + PS SPDG IVF S R+G +
Sbjct: 264 ----LEQGGNTDIYTLDT----GSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 315
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 316 LYIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGS 368
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G +P ++ + + G
Sbjct: 369 EERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGR 414
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK++ S PAW P
Sbjct: 415 NLKKVPL-SVPASDPAWSP 432
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 183 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLA 241
Query: 543 ------------------------EGGE--------GYGLHR-LTEGPWSDTMCNWSPDG 569
+GG G G R LT P +T ++SPDG
Sbjct: 242 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDG 301
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG ++Y I P G G + I +G AGR P +SP G I FT
Sbjct: 302 SQIVFESDR----SGGQQLY-IMPAGGGEPRRISNG-AGRYGTPVWSPRGDLIAFT---- 351
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+Q I ++ DGS+ +RL SF D P W P
Sbjct: 352 ----------KQHQGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 386
>gi|91772443|ref|YP_565135.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM
6242]
gi|91711458|gb|ABE51385.1| protein with TolB-like beta propeller domains [Methanococcoides
burtonii DSM 6242]
Length = 354
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 39/256 (15%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG-PEFAS 482
P++SP DRI + ++ +NSDG+N+ ++Y S VWD E V T G FAS
Sbjct: 49 PAWSPDSDRIVYSSEQTIWTMNSDGTNKNEIY----DSIVWD--GEPVFNTDGDRLYFAS 102
Query: 483 ESSE---VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
E ISI+V D+DG++ R T + P+VSPDG + + S +G +++
Sbjct: 103 EHVNPYSAKFISIHVVDIDGLN--RTQITKNADMRAPAVSPDGTQLAYLSKLSGNYEIWV 160
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
MD +G ++T+ + + WSPDG+ I ++ + G+ I P +
Sbjct: 161 MDIDGSNQ---TQITDSDIDEGVPAWSPDGKHIIYSLE------GNIWKVNIGPKVPSIL 211
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
K + + +P F+P+G + + + G+ +I+ + DG K
Sbjct: 212 K----ENYYTSYNPVFNPEGTKVAYVLETNGVK--------------DIWIMNADGKGTK 253
Query: 660 RLTQNSFEDGTPAWGP 675
+LT + ++ PAW P
Sbjct: 254 QLTFSDQDEIDPAWSP 269
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
T G N P+ SPD IV+ S +T ++ M+++G + + + D ++
Sbjct: 41 TEGINQVAPAWSPDSDRIVYSSEQT----IWTMNSDGTNK---NEIYDSIVWDGEPVFNT 93
Query: 568 DGEWIAFASDRDNPGSGSF-EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
DG+ + FAS+ NP S F ++++ +G R I + RA P SPDG + + S
Sbjct: 94 DGDRLYFASEHVNPYSAKFISIHVVDIDGLN-RTQITKNADMRA--PAVSPDGTQLAYLS 150
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G Y EI+ + +DGS+ ++T + ++G PAW P
Sbjct: 151 KLSG----------NY----EIWVMDIDGSNQTQITDSDIDEGVPAWSP 185
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 420 DGSFPSFSPKGDRIAFV-EFPG---VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVY 473
D P+ SP G ++A++ + G ++V++ DGSN+ Q+ + V W P + ++Y
Sbjct: 133 DMRAPAVSPDGTQLAYLSKLSGNYEIWVMDIDGSNQTQITDSDIDEGVPAWSPDGKHIIY 192
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
S E +I +N+ G L N + P +P+G + + G
Sbjct: 193 ----------SLEGNIWKVNI----GPKVPSILKENYYTSYNPVFNPEGTKVAYVLETNG 238
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
K+++IM+A+G G +LT + WSPDG+ IA++S++ +G F ++
Sbjct: 239 VKDIWIMNADGK---GTKQLTFSDQDEIDPAWSPDGKSIAYSSNK----AGEFNIW 287
>gi|453052656|gb|EMF00134.1| hypothetical protein H340_12652 [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 344
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 60/282 (21%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSD-------GSNRRQVYFK-----------NAFSTVWD 465
P+FSP G + F F Y + G RRQ + N T W+
Sbjct: 65 PAFSPDGSSLLFTVFHDGYNAGAAALRTLPLGGARRQAAPRTLLDESDRAAVNLPGTSWN 124
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGK 523
P S G FAS+ + D + + + R+T + + + PS SPDG+
Sbjct: 125 P--------SAGVTFASDRAGRDEVWV----LRPGGRPERVTEHDGDTGYLEPSFSPDGR 172
Query: 524 WIVFRST------RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT---MCNWSPDGEWIAF 574
WIVF+ + G +L+ + +G G RL +GP + T NWSP G+ + F
Sbjct: 173 WIVFQESTEREGGSGGDGSLWKVRRDG---TGRTRLVDGPGTHTDNRQPNWSPAGDRLVF 229
Query: 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
R GS + +Y++ +G GLR+L G G P +SPDGK +VF+S GG+
Sbjct: 230 QRRRQ--GSDEWRLYVMDADGGGLRELPVQGD-GEHTDPSWSPDGKWVVFSSTAGGLELP 286
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQ-NSFEDGTPAWGP 675
+IF + + G R+T+ +S DG P+W P
Sbjct: 287 ------------QIFAVPVTGGRPVRVTRHDSSYDGAPSWSP 316
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 498 DGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRL 553
DG R + G +N P+ SP G +VF+ R G LY+MDA+GG GL L
Sbjct: 198 DGTGRTRLVDGPGTHTDNRQPNWSPAGDRLVFQRRRQGSDEWRLYVMDADGG---GLREL 254
Query: 554 -TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH--PNGTGLRKLIQSGSAGRA 610
+G T +WSPDG+W+ F+S +G E+ I P G + +
Sbjct: 255 PVQGDGEHTDPSWSPDGKWVVFSST-----AGGLELPQIFAVPVTGGRPVRVTRHDSSYD 309
Query: 611 NHPYFSPDGKSIVFTSDYGG 630
P +SPDGK I F S GG
Sbjct: 310 GAPSWSPDGKWIAFESHPGG 329
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 424 PSFSPKGDRIAFVEFP----------GVYVVNSDGSNRRQVYFKNAFST-----VWDPVR 468
PSFSP G I F E ++ V DG+ R ++ T W P
Sbjct: 165 PSFSPDGRWIVFQESTEREGGSGGDGSLWKVRRDGTGRTRLVDGPGTHTDNRQPNWSPAG 224
Query: 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVF 527
+ +V F D + V D DG +R L G + PS SPDGKW+VF
Sbjct: 225 DRLV-------FQRRRQGSDEWRLYVMDADG-GGLRELPVQGDGEHTDPSWSPDGKWVVF 276
Query: 528 RSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
ST G + ++ + GG + R D +WSPDG+WIAF S
Sbjct: 277 SSTAGGLELPQIFAVPVTGGRPVRVTRHDSS--YDGAPSWSPDGKWIAFES 325
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 370 THHLNPFISPDSSRVGYHKC--RGGSTREDGNNQLLLENI--KSPLPDISLFRFDGSFPS 425
T +L P SPD + + + R G + DG+ + + ++ L D D P+
Sbjct: 160 TGYLEPSFSPDGRWIVFQESTEREGGSGGDGSLWKVRRDGTGRTRLVDGPGTHTDNRQPN 219
Query: 426 FSPKGDRIAFVEFPG------VYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSG 476
+SP GDR+ F +YV+++DG R++ + W P + VV
Sbjct: 220 WSPAGDRLVFQRRRQGSDEWRLYVMDADGGGLRELPVQGDGEHTDPSWSPDGKWVV---- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
F+S + +++ I V G VR + + PS SPDGKWI F S
Sbjct: 276 ---FSSTAGGLELPQIFAVPVTGGRPVRVTRHDSSYDGAPSWSPDGKWIAFES 325
>gi|209517620|ref|ZP_03266458.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
H160]
gi|209501916|gb|EEA01934.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
H160]
Length = 430
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 149/373 (39%), Gaps = 64/373 (17%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y G + D + Q + SP P IS P++SP
Sbjct: 154 KLMGNRGAFATRLSYVIKTGNKYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P+ SPDG+WI F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPTYSPDGQWIYFTSDRGGAPQIYKMPA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+G R+T +T SPDG+ +A+ S G+F++YL G L
Sbjct: 316 QGESAGSAQRVTFTGSYNTSPRVSPDGKELAYISRV----GGAFKLYLQDLQGGSATGLT 371
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ P F+ +G+ I++ + G G + + DG + L+
Sbjct: 372 DT---AHDESPSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQVLS 414
Query: 663 QNSFEDGTPAWGP 675
P+WGP
Sbjct: 415 VQGGNVREPSWGP 427
>gi|108760781|ref|YP_633893.1| tolB protein [Myxococcus xanthus DK 1622]
gi|32699694|sp|Q84FF7.1|TOLB_MYXXA RecName: Full=Protein TolB; AltName: Full=Adventurous gliding
motility protein W; Flags: Precursor
gi|118574586|sp|Q1D0D0.1|TOLB_MYXXD RecName: Full=Protein TolB; Flags: Precursor
gi|27804811|gb|AAO22855.1| adventurous gliding motility protein W [Myxococcus xanthus]
gi|108464661|gb|ABF89846.1| tolB protein [Myxococcus xanthus DK 1622]
Length = 431
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 377 ISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD R+ Y G S + DG+ L + L + P++SP G
Sbjct: 246 FSPDGKRIAYSLAEGESAQVYVANADGSGARALTDTPYGL---------NTSPTWSPDGK 296
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
RIAFV P VY++N+DG+ R++ F+ ++ W P + +V+T+ E +
Sbjct: 297 RIAFVSNRGGSPQVYIMNADGTGVRRLTFQGNYNQTPDWSPRGDLIVFTA-----RDERN 351
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
D+ +++V+ V RLT + +N P+ SP+G+ IVF STR G LY+M A+G
Sbjct: 352 AFDLFTVSVE----TGKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGN 407
Query: 546 EGYGLHRLTEGPWSDTMCNWSP 567
L R +G + +WSP
Sbjct: 408 NQLPL-RTEKGTYQ--TPDWSP 426
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ S G ++AF + P +YV S G + V +T ++ G
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYV-QSPGGEAKAVISGGQMAT-------GAAFSPDGK 251
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A +E + + V + DG A T N P+ SPDGK I F S R G +Y
Sbjct: 252 RIAYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVY 311
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
IM+A +G G+ RLT +G ++ T +WSP G+ I F A D N +F+++ +
Sbjct: 312 IMNA---DGTGVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN----AFDLFTVSVETG 363
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q G P FSP+G+ IVFTS G S +++ + DG+
Sbjct: 364 KVTRLTQ--DQGSNEEPAFSPNGRLIVFTSTRNGGS--------------QLYVMTADGN 407
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 408 NQLPLRTEKGTYQTPDWSP 426
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R T G N P++S DG + F + R ++Y+ + GGE
Sbjct: 179 VYVADWDGGNA--RALTKGGINILPALSQDGSQVAFTTYRKNRPDIYVQ-SPGGEA---K 232
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ G T +SPDG+ IA++ S ++Y+ + +G+G R L + G
Sbjct: 233 AVISGGQMATGAAFSPDGKRIAYSLAEGE----SAQVYVANADGSGARALTDT-PYGLNT 287
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK I F S+ GG +P +++ + DG+ ++RLT + TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG-------SP-------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 672 AWGPRFIRPVDVEEVKNEQCAFE 694
W PR + V ++E+ AF+
Sbjct: 334 DWSPR--GDLIVFTARDERNAFD 354
>gi|189346278|ref|YP_001942807.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Chlorobium limicola DSM 245]
gi|189340425|gb|ACD89828.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium
limicola DSM 245]
Length = 444
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 125/271 (46%), Gaps = 44/271 (16%)
Query: 411 LPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDP 466
+ ++ FR P FSP G R+A+ + P +Y+ S N KN S DP
Sbjct: 206 IQQLTNFRSISLTPVFSPDGTRLAYTSYTSGKPTLYI-RSMSDNSIAAVGKNGVSV--DP 262
Query: 467 VREAVVYTSGGPEFASESS---EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
G E A+ S + +I I D G+S RRLT + + P+ SPDGK
Sbjct: 263 GWR------NGSEVATTLSFEGDQEIYLIRSDG--GIS--RRLTNSRGIDVSPTFSPDGK 312
Query: 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
+ F S+R G +++ D + G+ RLT +T +WSP G+ IA+++ S
Sbjct: 313 QMAFVSSRNGMPQIFVQDVQSGQ---TRRLTYSGRYNTQPSWSPSGDKIAYSTWEK---S 366
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
G +++I+ +G+G+++L S R N P +SPDG IVFTS+
Sbjct: 367 GEINIFVINADGSGVKRLT---SGVRENESPSWSPDGSMIVFTSN--------------R 409
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
Q +++ + G +RL Q E P+W
Sbjct: 410 QGGKKLYVMSSTGGSQRRLLQMDGEQMQPSW 440
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG------------STREDGNNQLLLE--- 405
+LT F ++ L P SPD +R+ Y G S G N + ++
Sbjct: 208 QLTNF---RSISLTPVFSPDGTRLAYTSYTSGKPTLYIRSMSDNSIAAVGKNGVSVDPGW 264
Query: 406 ----NIKSPLP-----DISLFRFDGSF-------------PSFSPKGDRIAFVE----FP 439
+ + L +I L R DG P+FSP G ++AFV P
Sbjct: 265 RNGSEVATTLSFEGDQEIYLIRSDGGISRRLTNSRGIDVSPTFSPDGKQMAFVSSRNGMP 324
Query: 440 GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
++V + R++ + ++T W P + + Y++ +S E++I IN D
Sbjct: 325 QIFVQDVQSGQTRRLTYSGRYNTQPSWSPSGDKIAYST-----WEKSGEINIFVINADG- 378
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
S V+RLT+ + N PS SPDG IVF S R G K LY+M + GG
Sbjct: 379 ---SGVKRLTSGVRENESPSWSPDGSMIVFTSNRQGGKKLYVMSSTGG 423
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 52/258 (20%)
Query: 430 GDRIAFVE----FPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASE 483
G +I FV +Y + DG +Q+ + + + V+ P + YTS + S
Sbjct: 181 GSKIVFVSNKTGSKEIYQCDFDGQGIQQLTNFRSISLTPVFSPDGTRLAYTS----YTSG 236
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP---DGKWIVFRSTRTGYKNLYIM 540
+ I S++ + + V GKN SV P +G + + G + +Y++
Sbjct: 237 KPTLYIRSMSDNSIAAV---------GKNGV--SVDPGWRNGSEVATTLSFEGDQEIYLI 285
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
++GG RLT D +SPDG+ +AF S R+ G ++++ R+
Sbjct: 286 RSDGGIS---RRLTNSRGIDVSPTFSPDGKQMAFVSSRN----GMPQIFVQDVQSGQTRR 338
Query: 601 LIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI--FKIKLDGSD 657
L SG R N P +SP G I +++ ++ GEI F I DGS
Sbjct: 339 LTYSG---RYNTQPSWSPSGDKIAYST---------------WEKSGEINIFVINADGSG 380
Query: 658 LKRLTQNSFEDGTPAWGP 675
+KRLT E+ +P+W P
Sbjct: 381 VKRLTSGVRENESPSWSP 398
>gi|114570966|ref|YP_757646.1| TolB domain-containing protein [Maricaulis maris MCS10]
gi|114341428|gb|ABI66708.1| TolB, N-terminal domain protein [Maricaulis maris MCS10]
Length = 453
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 46/289 (15%)
Query: 410 PLPDISLFRFDGSFPSF-------------SPKGDRIAFVEF----PGVYVVNSDGSNRR 452
P+ ++L DG+ PSF SP I +V F Y+ N + + R+
Sbjct: 185 PIRQLALMDQDGANPSFLTDRSYMALLPNYSPSAQEITYVSFLDGQATTYLYNLE-TGRQ 243
Query: 453 QVYFKN----AFSTVWDPVREAVV--YTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
+ F + A S V DP +++ ++ G E A I++ D+ ++RL
Sbjct: 244 EALFASGGAGAASQV-DPDGQSLSARFSPDGSELAVSIETRSGHDIHLFDLQ-TRNLQRL 301
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T + ++ PS +PDG+ IVF S R G LY+M+ +G + + R+T G T WS
Sbjct: 302 TQHPADDVEPSFAPDGERIVFSSARGGGSQLYVMNRDGSD---VQRITFGSGRYTTPVWS 358
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
P G+ IAF G F + ++ +G+G+ +++ G + P +SP+G+ ++FT
Sbjct: 359 PRGDLIAFTKQV----GGQFSLGVVRADGSGIERILFEGYF--VDTPAWSPNGRVLLFT- 411
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E + +Y EI+ + L G +L+RL PAW P
Sbjct: 412 -----RGEQRANGTRY----EIWSVDLAGFNLRRLATGGMAS-DPAWSP 450
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
+V P G + G+ +++ TR S I LFDL L R +
Sbjct: 257 QVDPDGQSLSARFSPDGSELAVSIETR----SGHDIHLFDLQTRN---LQRLTQHPADDV 309
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
P +PD R+ + RGG G+ ++ S + I+ + P +SP+GD I
Sbjct: 310 EPSFAPDGERIVFSSARGG-----GSQLYVMNRDGSDVQRITFGSGRYTTPVWSPRGDLI 364
Query: 434 AFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFASESSEV 487
AF + G + VV +DGS ++ F+ F + W P +++T G E + +
Sbjct: 365 AFTKQVGGQFSLGVVRADGSGIERILFEGYFVDTPAWSPNGRVLLFTRG--EQRANGTRY 422
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
+I S+++ + +RRL T G + P+ SP
Sbjct: 423 EIWSVDLAGFN----LRRLATGGMASD-PAWSP 450
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 33/214 (15%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
+VY S G E I + + D DG + LT P+ SP + I + S
Sbjct: 172 IVYVSEGRGIEGEP----IRQLALMDQDGANP-SFLTDRSYMALLPNYSPSAQEITYVSF 226
Query: 531 RTGYKNLYIMDAEGGE--------GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
G Y+ + E G G G + +SPDG +A + + +
Sbjct: 227 LDGQATTYLYNLETGRQEALFASGGAGAASQVDPDGQSLSARFSPDGSELAVSIETRS-- 284
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
+++L L++L Q + P F+PDG+ IVF+S GG S
Sbjct: 285 --GHDIHLFDLQTRNLQRLTQHPADD--VEPSFAPDGERIVFSSARGGGS---------- 330
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+++ + DGSD++R+T S TP W PR
Sbjct: 331 ----QLYVMNRDGSDVQRITFGSGRYTTPVWSPR 360
>gi|410478708|ref|YP_006766345.1| Tol biopolymer transport system periplasmic protein [Leptospirillum
ferriphilum ML-04]
gi|424868629|ref|ZP_18292368.1| Putative TolB protein [Leptospirillum sp. Group II 'C75']
gi|124514218|gb|EAY55733.1| putative TolB protein [Leptospirillum rubarum]
gi|387221186|gb|EIJ75774.1| Putative TolB protein [Leptospirillum sp. Group II 'C75']
gi|406773960|gb|AFS53385.1| periplasmic component of the Tol biopolymer transport system
[Leptospirillum ferriphilum ML-04]
Length = 447
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 26/179 (14%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
V RLT + NN PS SPDG IVF S R G+ +++MD++G HR++ +
Sbjct: 293 VHRFERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNE---HRISFTGFY 349
Query: 560 DTMCNWSPDGEWIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ +WSP G+ IA+ ++R P ++ L P TG R L + +G+ + P +SP
Sbjct: 350 NVSPSWSPRGDAIAYVCMNERHRP-----KICLTTP--TGDRSLQLTHGSGQDDSPDWSP 402
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
DG++I+FT HQ + + I K+ LDG+ + RL TP W R
Sbjct: 403 DGRTILFT--------------HQVKGHSYIEKMFLDGTHVHRLGAFPHSVITPVWAVR 447
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 50/273 (18%)
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH----IELFDLVKNKFIELTRFVS 367
I R+T + A+TPA S + + +SY H I +DL + L RF
Sbjct: 205 IHRLTWDRVLAYTPAWSLSRHLIVY-------TSYLHSEPQILSYDLSTGRRAPLARFPG 257
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD------- 420
LN I+P+ SR S + N + D+ + RF+
Sbjct: 258 -----LN--ITPNFSRNSAMLAMALSKSQTSQNTEIYSY------DMKVHRFERLTYSHS 304
Query: 421 -GSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVY 473
PS+SP G +I FV P ++V++SDGSN ++ F + S W P +A+ Y
Sbjct: 305 NNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRISFTGFYNVSPSWSPRGDAIAY 364
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
+E I + G +++ +G++++ P SPDG+ I+F G
Sbjct: 365 VC--------MNERHRPKICLTTPTGDRSLQLTHGSGQDDS-PDWSPDGRTILFTHQVKG 415
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
+ + M +G +HRL P S W+
Sbjct: 416 HSYIEKMFLDGTH---VHRLGAFPHSVITPVWA 445
>gi|75676901|ref|YP_319322.1| translocation protein TolB [Nitrobacter winogradskyi Nb-255]
gi|118574589|sp|Q3SP21.1|TOLB_NITWN RecName: Full=Protein TolB; Flags: Precursor
gi|74421771|gb|ABA05970.1| TolB [Nitrobacter winogradskyi Nb-255]
Length = 450
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 223 PRFSPSTQEVTYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFAPDGQRIIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDGARICFESDRGGKPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + +I P+G+G
Sbjct: 333 YVMGATGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIIKPDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
R L ++G N P F+P+G+ ++F D GG
Sbjct: 386 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG 415
>gi|188584485|ref|YP_001927930.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium populi BJ001]
gi|179347983|gb|ACB83395.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
populi BJ001]
Length = 446
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P +SP G IAF+ + P V +++ + R+ V + + S + P +V +
Sbjct: 216 PRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKRQTVGNFASMSASPRFSPDGRRLVMS-- 273
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI+++++ G A +T + PS SPDG IVF S R G +
Sbjct: 274 ----VQQGGNADIVTVDL----GSKAQTPVTQGLAIDTSPSYSPDGSQIVFESDRGGSQQ 325
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M G +G RL+ G S + WSP G+ IAF R G F + ++ P+G+
Sbjct: 326 IYVM---GADGSNPRRLSFGEGSASQPAWSPRGDLIAFTRQR----KGGFAICVMKPDGS 378
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L + G N P F+P+G+ ++F D GG Q G+++ + + G
Sbjct: 379 GERVLTE----GFHNESPTFAPNGQYVMFFRDPGG------------QGGGKLYMVDITG 422
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+ + SF P W P
Sbjct: 423 KVEQPVPTPSFAS-DPTWSP 441
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG 549
+ V D DG + VR LT G + P SP G+ I F + G + + ++D E G+
Sbjct: 192 LMVMDQDGAN-VRALTGGGDVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGK--- 247
Query: 550 LHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R T G ++ + +SPDG + + + G+ ++ + G+ + + G A
Sbjct: 248 --RQTVGNFASMSASPRFSPDGRRLVMSVQQ----GGNADIVTVD-LGSKAQTPVTQGLA 300
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P +SPDG IVF SD GG +I+ + DGS+ +RL+
Sbjct: 301 -IDTSPSYSPDGSQIVFESDRGGSQ--------------QIYVMGADGSNPRRLSFGEGS 345
Query: 668 DGTPAWGPR 676
PAW PR
Sbjct: 346 ASQPAWSPR 354
>gi|350559530|ref|ZP_08928370.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781798|gb|EGZ36081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 431
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 154/379 (40%), Gaps = 83/379 (21%)
Query: 333 KFIAVATRRPTSSYRHI----ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
+++ + +RP + +FD++ N+ + R P D R G H+
Sbjct: 99 EYLVIGRQRPEPEQEQVLIEFHVFDVLANQRLGGFRIPVPL----------DMMRRGAHR 148
Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
+ ++ E I D F ++ + +GDR F + V +SDG
Sbjct: 149 V----------SDIVYEEITG---DKGAFSARIAYVGVAGEGDRRRFT----LEVADSDG 191
Query: 449 SNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
+N R ++ +A S W P +VY S F + SEV NV+ A +R+
Sbjct: 192 ANPRTLFRSSAPLMSPDWSPDGRELVYVS----FENRRSEV--FRQNVE----TGARQRI 241
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
N+ P SPDG+ I +R G N+Y+++ + GE L + DT WS
Sbjct: 242 AAFQGINSAPVWSPDGRRIALTLSRDGTANIYMLELDSGE---LTPVVRSNAIDTEPAWS 298
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
PDG+ + F SDR +GS ++Y + P GT R ++ SAG P SPDGKS+V+
Sbjct: 299 PDGDTLYFTSDR----AGSPQVYQLQLPGGTPRRLTFEATSAG---APTVSPDGKSLVYV 351
Query: 626 -SDYGGISAEPISTPHQ---------------YQPYGEIF-------------KIKLDGS 656
+ GG+ + + + P G + + DG
Sbjct: 352 HAGDGGLRLARLDLESRRVTLLTRGRYDKSPSFAPNGSMVIYSTTDRGRGILGSVSRDGQ 411
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+RL S E PAW P
Sbjct: 412 VHQRLAARSGEVREPAWSP 430
>gi|349701037|ref|ZP_08902666.1| translocation protein TolB [Gluconacetobacter europaeus LMG 18494]
Length = 456
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P +AF+ + P VY+ N + +R + + +F+ + P +VV +
Sbjct: 225 PRFNPANSELAFMSYANYRPRVYLFNLNTGQQRLLGDFSGISFAPRFAPDGRSVVLS--- 281
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ DI ++++ + A R++T++G + PS SPDG IVF S R G L
Sbjct: 282 ---VTRGGGSDIYTVDLTTM----ARRQITSSGAIDTSPSYSPDGSQIVFNSDRGGSPQL 334
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G WSP G+ IAF+ +GSF + ++ P+GTG
Sbjct: 335 YIMSAAGGDA---KRISYGHGYYGSPVWSPRGDLIAFS----RIANGSFSLGVMAPDGTG 387
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 388 ERILTQGFT---VESPTFCPNGRVLAF 411
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 489 IISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG + R TNG+ P +P + F S +Y+ + G+
Sbjct: 199 ITRLAIMDQDGADS--RYLTNGQWLTLTPRFNPANSELAFMSYANYRPRVYLFNLNTGQ- 255
Query: 548 YGLHRLTEGPWSDTMC--NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
RL G +S ++PDG + + R G GS ++Y + R++ SG
Sbjct: 256 ---QRLL-GDFSGISFAPRFAPDGRSVVLSVTR---GGGS-DIYTVDLTTMARRQITSSG 307
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+ P +SPDG IVF SD GG +P +++ + G D KR++
Sbjct: 308 AI--DTSPSYSPDGSQIVFNSDRGG-------SP-------QLYIMSAAGGDAKRISYGH 351
Query: 666 FEDGTPAWGPR 676
G+P W PR
Sbjct: 352 GYYGSPVWSPR 362
>gi|425765624|gb|EKV04294.1| hypothetical protein PDIP_88020 [Penicillium digitatum Pd1]
gi|425779074|gb|EKV17164.1| hypothetical protein PDIG_16510 [Penicillium digitatum PHI26]
Length = 676
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 144/567 (25%), Positives = 227/567 (40%), Gaps = 95/567 (16%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--PYGVAD---- 218
+ +D ++S G+ YVST N A ++ +L+TG +T P D
Sbjct: 143 AAEDSVVISPNGKLAAYVSTANNYN------ANIWVKDLETGAEWNITDTPANRPDEDMM 196
Query: 219 ---FSPAVSPSGKYTAVASYGNKGWDGEVEML---------STDIYIFLTRDGTQRVKIV 266
F PA SP G + A +S N WDG + + ++ I++ R ++ V
Sbjct: 197 HGNFRPAWSPDGNWLAFSSDRNTKWDGHGNLTYLGLAGWEHTQELSIYIIRPDGSDLRRV 256
Query: 267 ENGGWPC-----WV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
N + C W D + L F+ + + W P+ +V+ + +I V G
Sbjct: 257 ANRTYHCLGSPKWSPDGNRLIFYEMTRNETW----DAHRPE--IVADANSTIVSVEINGQ 310
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
G + T T Y H++ D + + LT +P SPD
Sbjct: 311 DRRVEVGGAGVKTYPQYVTNS-TIGY-HLKGGD---KEGLYLTNGTYLNVTIRSPSWSPD 365
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF----- 435
V Y K D + + L + + S D +RF FP S DR+A
Sbjct: 366 GKYVVYEKI-------DWSIRPLFKKLYSWDSDWE-YRFTDVFPQLSSD-DRVALTERQL 416
Query: 436 ------------VEFPGVYVVNSDG---SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
+E +Y N + Q A+S W P E VV+ G
Sbjct: 417 GNSSIATFHLEDMELSLLYKPNDTSLLDTTLIQEGLGGAYSPSWSPDGEWVVFGVGAWFE 476
Query: 481 ASESSEVDIISINVD----DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR-----STR 531
A + I+ +V S++ + N FPS S DGK +V+R + +
Sbjct: 477 ARDWRGGWIVRSTATGSYVEVLTTSSLWINESKNLNTGFPSFSHDGKQVVYRVWGADTAK 536
Query: 532 TGYKN---LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
G + L I+D + E + +LT G W D + ++SPDGE+I F S ++E+
Sbjct: 537 YGDETEIGLRILDLDTRE---ITQLTSG-W-DNLPSFSPDGEFIVFTR---KVSSSNYEV 588
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
I P+GT R L SG+ H + DGK I+++S G E +QPYG+I
Sbjct: 589 CTIRPDGTDFRILTSSGA--NDAHAVWRQDGK-IMWSSGMYGFQYECALYDDTFQPYGQI 645
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGS+ + LT + +ED P + P
Sbjct: 646 MIMDSDGSNKRALTNSIWEDSMPLFLP 672
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV 454
R+ G L N LP ++ F S +P A G+ ++N ++
Sbjct: 24 RDAGTKVDHLANPHGQLPSDTILSKSTDFVSPTPS----AAAGKKGLLLMNRIAPGTSEL 79
Query: 455 YFKNAFSTVWDPVREAVVYTSGGPEFASE-SSEVDIISINVD-DVDGVSAVRRLTTNGKN 512
Y NA D E + G E+ +E S + + IS + D DG S + R+ +G +
Sbjct: 80 YIANA-----DGTDERPLLADPGYEYHAEFSPDGNWISFTSERDGDGNSDIWRVRPDGSD 134
Query: 513 --------NAFPSV--SPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL-TEGPWSD 560
A SV SP+GK + ST Y N+++ D E G + + P D
Sbjct: 135 LQPIVKSPAAEDSVVISPNGKLAAYVSTANNYNANIWVKDLETGAEWNITDTPANRPDED 194
Query: 561 TMCN-----WSPDGEWIAFASDRDNPGSG----------------SFEMYLIHPNGTGLR 599
M WSPDG W+AF+SDR+ G +Y+I P+G+ LR
Sbjct: 195 MMHGNFRPAWSPDGNWLAFSSDRNTKWDGHGNLTYLGLAGWEHTQELSIYIIRPDGSDLR 254
Query: 600 KLIQSGSAGRANH----PYFSPDGKSIVF 624
++ A R H P +SPDG ++F
Sbjct: 255 RV-----ANRTYHCLGSPKWSPDGNRLIF 278
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
SPDG WI F S R G N I +G L + + P ++ SP+G+ A+ S
Sbjct: 105 SPDGNWISFTSERDGDGNSDIWRVRP-DGSDLQPIVKSPAAEDSVVISPNGKLAAYVSTA 163
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--------PYFSPDGKSIVFTSD--- 627
+N + + L TG I A R + P +SPDG + F+SD
Sbjct: 164 NNYNANIWVKDL----ETGAEWNITDTPANRPDEDMMHGNFRPAWSPDGNWLAFSSDRNT 219
Query: 628 ----YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED-GTPAWGPRFIRPVD 682
+G ++ ++ Q I+ I+ DGSDL+R+ ++ G+P W P R +
Sbjct: 220 KWDGHGNLTYLGLAGWEHTQEL-SIYIIRPDGSDLRRVANRTYHCLGSPKWSPDGNRLIF 278
Query: 683 VEEVKNE 689
E +NE
Sbjct: 279 YEMTRNE 285
>gi|392382488|ref|YP_005031685.1| periplasmic protein of the Tol-Pal system [Azospirillum brasilense
Sp245]
gi|356877453|emb|CCC98287.1| periplasmic protein of the Tol-Pal system [Azospirillum brasilense
Sp245]
Length = 450
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 37/259 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N D S R++V + F+ + P VV +
Sbjct: 219 PRFSPATQEITYMSYFNKKPRVYLFNID-SGRQEVLGDFVGMTFAPRFSPDGNKVVMS-- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+++ DI ++++ +LT + + PS SPDG+ IVF S R G +
Sbjct: 276 ----MAQNGNTDIYALDLR----TRRQTQLTDSPGIDTGPSYSPDGQRIVFESDRGGSQQ 327
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM+A+G G RLT G WSP G+ IAF R + SF + +I P+GT
Sbjct: 328 LYIMNADGS---GQKRLTFGEGRYGTPVWSPRGDLIAFTRQRGS----SFALGVIRPDGT 380
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L +S P ++P+G+ + F D S +++ I + G+
Sbjct: 381 GERILTES---FHVEGPTWAPNGRVLSFFRDVPAGDGRGRSA--------KLYTIDVTGA 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ + PAW P
Sbjct: 430 NERRVI-TPLDGSDPAWSP 447
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + + T+GKN P SP + I + S +Y+ + + G L
Sbjct: 196 LAIMDQDGEN--HQFLTDGKNLVLTPRFSPATQEITYMSYFNKKPRVYLFNIDSGRQEVL 253
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++ +SPDG + + ++ G+ ++Y + R+ + S G
Sbjct: 254 GDFVGMTFA---PRFSPDGNKVVMSMAQN----GNTDIYALDLRTR--RQTQLTDSPGID 304
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG+ IVF SD GG +++ + DGS KRLT GT
Sbjct: 305 TGPSYSPDGQRIVFESDRGGSQ--------------QLYIMNADGSGQKRLTFGEGRYGT 350
Query: 671 PAWGPR 676
P W PR
Sbjct: 351 PVWSPR 356
>gi|330991878|ref|ZP_08315827.1| Protein tolB [Gluconacetobacter sp. SXCC-1]
gi|329760899|gb|EGG77394.1| Protein tolB [Gluconacetobacter sp. SXCC-1]
Length = 456
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P +AF+ + P VY+ N + +R + + +F+ + P +V+ +
Sbjct: 225 PRFNPANSELAFMSYANYRPRVYLFNLNTGQQRLLGDFSGISFAPRFAPDGRSVILS--- 281
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ DI +++ ++ + R+LT +G + PS SPDG IVF S R G L
Sbjct: 282 ---VTRGGGSDIYLVDLANM----SRRQLTASGAIDTSPSFSPDGSQIVFNSDRGGSPQL 334
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G WSP G+ IAF+ +GSF + ++ P+GTG
Sbjct: 335 YIMSASGGDA---KRISYGHGQYGSPVWSPRGDLIAFS----RIANGSFSLGVMAPDGTG 387
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 388 ERILTQGFT---VESPAFCPNGRVLAF 411
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + R TNG+ P +P + F S +Y+ + G+ L
Sbjct: 202 LAIMDQDGADS--RYLTNGQWLTLTPRFNPANSELAFMSYANYRPRVYLFNLNTGQQRLL 259
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ ++ ++PDG + + R G GS ++YL+ R+L SG+
Sbjct: 260 GDFSGISFAP---RFAPDGRSVILSVTR---GGGS-DIYLVDLANMSRRQLTASGAID-- 310
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P FSPDG IVF SD GG +P +++ + G D KR++ + G+
Sbjct: 311 TSPSFSPDGSQIVFNSDRGG-------SP-------QLYIMSASGGDAKRISYGHGQYGS 356
Query: 671 PAWGPR 676
P W PR
Sbjct: 357 PVWSPR 362
>gi|206602338|gb|EDZ38819.1| Putative TolB protein [Leptospirillum sp. Group II '5-way CG']
Length = 447
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + NN PS SPDG IVF S R G+ +++MD++G HR++ + + +
Sbjct: 298 RLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNE---HRISFTGFYNVSPS 354
Query: 565 WSPDGEWIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSP G+ IA+ ++R P ++ L P TG R L + +G+ + P +SPDG++I
Sbjct: 355 WSPRGDAIAYVCMNERHRP-----KICLTTP--TGDRSLQLTHGSGQDDSPDWSPDGRTI 407
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+FT HQ + + I K+ LDG+ + RL TP W R
Sbjct: 408 LFT--------------HQVKGHSYIEKMFLDGTHVHRLGSYPHSVITPVWAVR 447
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGG 477
PS+SP G +I FV P ++V++SDGSN ++ F + S W P +A+ Y
Sbjct: 309 PSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRISFTGFYNVSPSWSPRGDAIAYVC-- 366
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+E I + G +++ +G++++ P SPDG+ I+F G+ +
Sbjct: 367 ------MNERHRPKICLTTPTGDRSLQLTHGSGQDDS-PDWSPDGRTILFTHQVKGHSYI 419
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
M +G +HRL P S W+
Sbjct: 420 EKMFLDGTH---VHRLGSYPHSVITPVWA 445
>gi|358639281|dbj|BAL26578.1| translocation protein TolB [Azoarcus sp. KH32C]
Length = 429
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 156/356 (43%), Gaps = 75/356 (21%)
Query: 348 HIELFDLVK-NKFIELTRFVSPKT-----HHLNPFISPD--------SSRVGYHKCRGGS 393
LFD K N+ LT ++P H + F+ S+R+ Y + GS
Sbjct: 118 RFRLFDTQKLNELGGLTMRMAPAQNRAIGHKIADFVYEKLTGQPGYFSTRIAY-VVKSGS 176
Query: 394 TRE----DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN 445
E D + Q + S P IS P+++P G R+A+V F P +YV +
Sbjct: 177 RYELQIADADGQNSATALASREPIIS--------PAWAPDGQRLAYVSFESKKPVIYV-H 227
Query: 446 SDGSNRRQVY--FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
+ + +RQV FK + S W P R AVV T G + + +N D
Sbjct: 228 TLATGQRQVVANFKGSNSAPTWSPDGQRLAVVLTKDG--------QSQLYVLNADG---- 275
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWS 559
S VRRL T+ + P+ SPDG+WI F S R G +Y A GG R+T EG ++
Sbjct: 276 SGVRRLATSSGIDTEPAWSPDGEWIYFTSDRGGSPQIYRSPANGGSA---QRVTFEGSYN 332
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
T + DG +AF + R+N G F++ ++ R+ + R P F+P+G
Sbjct: 333 VT-PRPAADGSSLAFIT-RNN---GRFQVAIMD---LATRQTTILTDSTRDESPSFAPNG 384
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ I++ ++ GG G + + DG +RL+ + + PAWGP
Sbjct: 385 RMILYATESGG--------------RGVLAAVSSDGRVKQRLSVQAADVREPAWGP 426
>gi|126733593|ref|ZP_01749340.1| translocation protein TolB precursor [Roseobacter sp. CCS2]
gi|126716459|gb|EBA13323.1| translocation protein TolB precursor [Roseobacter sp. CCS2]
Length = 438
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
P FSP GDR+ + F P + V+N R+Q+ + AFS + V+Y+
Sbjct: 209 PRFSPNGDRVLYTSFESGFPRINVLNVANVGRQQLQTAPGEMAFSPRFSRDGRQVIYS-- 266
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S DI ++ V RLT+ PS+SPDG IVF S R+G +
Sbjct: 267 ----LSNGGNTDIYRTDLSTGQHV----RLTSAPSIETAPSLSPDGSQIVFESDRSGNQQ 318
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ +AF +G F + ++ +G+
Sbjct: 319 LYVMSANGGEA---RRISFGQGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRIDGS 371
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P +SP+G+ I+F+ + G ++ + + G
Sbjct: 372 EERLLT---SSFLDEGPTWSPNGRVIMFSRETQGAGGT-----------SSMYSVDISGR 417
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + Q D P+WGP
Sbjct: 418 NLKAVPLQGGASD--PSWGP 435
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 27/200 (13%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP+G +++ S +G+ +
Sbjct: 172 FVSESGPKDNRQKRLAIMDFDGAN-VQFLTDSSSIVLAPRFSPNGDRVLYTSFESGFPRI 230
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+++ G +L P +S DG + ++ G+ ++Y +
Sbjct: 231 NVLNVAN---VGRQQLQTAPGEMAFSPRFSRDGRQVIYSLSN----GGNTDIYRTDLSTG 283
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+L + S A P SPDG IVF SD G +++ + +G
Sbjct: 284 QHVRLTSAPSIETA--PSLSPDGSQIVFESDRSGNQ--------------QLYVMSANGG 327
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
+ +R++ GTP W PR
Sbjct: 328 EARRISFGQGRYGTPVWSPR 347
>gi|56476928|ref|YP_158517.1| translocation protein TolB [Aromatoleum aromaticum EbN1]
gi|67461905|sp|Q5P4Z6.1|TOLB_AROAE RecName: Full=Protein TolB; Flags: Precursor
gi|56312971|emb|CAI07616.1| tolB protein precursor, periplasmic component of the Tol biopolymer
transport system [Aromatoleum aromaticum EbN1]
Length = 426
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 48/262 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYT 474
P+++P G R+A+V F P VYV ++ + +R V FK + S W P R AVV T
Sbjct: 200 PAWAPDGQRLAYVSFEAKKPVVYV-HTLATGQRHVVANFKGSNSAPTWAPDGQRLAVVLT 258
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G + + +N D S +RR+ T+ + P+ SPDG+WI F S R G
Sbjct: 259 KDG--------QSQLYVLNADG----SGLRRMATSPGIDTEPAWSPDGEWIYFSSDRGGS 306
Query: 535 KNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y + A GG R+T EG ++ T SPDG +AF + R+N G F++ ++
Sbjct: 307 AQIYRIPASGGSA---QRVTFEGNYNVT-PRLSPDGRSLAFIT-RNN---GRFQVAVMD- 357
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
R+ + R P F+P+G+ I++ ++ GG G + +
Sbjct: 358 --LATRQTTILTDSSRDESPSFAPNGRMILYATESGG--------------RGVLAAVSS 401
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG +RL+ + + P+WGP
Sbjct: 402 DGRVKQRLSVQAADVREPSWGP 423
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 414 ISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPV 467
++ F+ S P+++P G R+A V +YV+N+DGS R++ T W P
Sbjct: 234 VANFKGSNSAPTWAPDGQRLAVVLTKDGQSQLYVLNADGSGLRRMATSPGIDTEPAWSPD 293
Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
E + ++S I I G SA +R+T G N P +SPDG+ + F
Sbjct: 294 GEWIYFSS------DRGGSAQIYRI---PASGGSA-QRVTFEGNYNVTPRLSPDGRSLAF 343
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+ G + +MD + L + D +++P+G I +A++ G
Sbjct: 344 ITRNNGRFQVAVMDLATRQTTILTDSSR----DESPSFAPNGRMILYATESGGRG 394
>gi|114706798|ref|ZP_01439698.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506]
gi|114537746|gb|EAU40870.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506]
Length = 441
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + FS + P + VV +
Sbjct: 214 PRFSPNRQEITYMSFGNGEPRVYLLQLETGQREIVGNFPGMTFSPRFSPDGQKVVMS--- 270
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ A +RLT + PS SPDG IVF S R G + L
Sbjct: 271 ---LQQDGNANIYAMDLRS----RATQRLTNTAAIDTSPSYSPDGGRIVFESDRGGRQQL 323
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M+A+G R++ G S + WSP G+ IAF G F++ ++ P+G+G
Sbjct: 324 YTMNADGSN---QQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGQFQIGVMRPDGSG 376
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F D G E++ I L G
Sbjct: 377 ERIL----TTGYHNEGPTWAPNGRVLMFFRDQRGGGGP------------ELWSIDLSGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ N F PAW P
Sbjct: 421 NEQKVPTNGFAS-DPAWSP 438
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES + + + D DG + +R LT P SP+ + I + S G +
Sbjct: 177 FVSESGNKANRVKRLAIMDQDGAN-LRYLTEGQDLVLTPRFSPNRQEITYMSFGNGEPRV 235
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y++ E G+ + P +SPDG+ + + +D G+ +Y +
Sbjct: 236 YLLQLETGQ---REIVGNFPGMTFSPRFSPDGQKVVMSLQQD----GNANIYAMDLRSRA 288
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
++L + +A P +SPDG IVF SD GG +++ + DGS+
Sbjct: 289 TQRL--TNTAAIDTSPSYSPDGGRIVFESDRGGRQ--------------QLYTMNADGSN 332
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 333 QQRI---SFGDGSYSTPVWSPR 351
>gi|58040119|ref|YP_192083.1| translocation protein TolB [Gluconobacter oxydans 621H]
gi|67461870|sp|Q5FQB9.1|TOLB_GLUOX RecName: Full=Protein TolB; Flags: Precursor
gi|58002533|gb|AAW61427.1| TolB protein [Gluconobacter oxydans 621H]
Length = 453
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P F+P D+IAF+ + P VY+ + S R+Q+ + A F+ + P +VV +
Sbjct: 220 PRFNPVRDQIAFMSYANNRPRVYLFDL-ASGRQQILGEFAGISFAPRFSPTGGSVVLS-- 276
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
A+ DI +++ A R++T +NG + P SPDG IVF S R G
Sbjct: 277 ----ATRGGGSDIFVVDLAS----RAKRQITNSNGAIDTSPCFSPDGSQIVFNSDRGGSP 328
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LYIM A GG R++ G WSP G+ IAF GSG F + +++P+G
Sbjct: 329 QLYIMSASGGAA---KRISYGSGQYGSPVWSPRGDLIAFT----RIGSGGFSLGVMNPDG 381
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
TG R L Q + A F P+G+ + F
Sbjct: 382 TGERILTQGFTVDGAT---FCPNGRVLAF 407
>gi|254464281|ref|ZP_05077692.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium Y4I]
gi|206685189|gb|EDZ45671.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium Y4I]
Length = 441
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN----AFSTVWDPVREAVVYTS 475
P FSP GDR+ + FP ++V++ G +R+V +F+ + P +VY+
Sbjct: 212 PRFSPAGDRVLYTSYESGFPQIHVLDV-GQVQRKVLSSGDGTMSFAPRFAPDGRTIVYSQ 270
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
++ D+ +++++ A RLT+ PS SPDG IVF S R+G +
Sbjct: 271 ------TQGGNTDLFAMDIE----TGAKTRLTSAPSIETAPSFSPDGSQIVFESDRSGSQ 320
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LY+M A GGE R++ G WSP G+ +AF G F + ++ +G
Sbjct: 321 QLYVMPAGGGEA---RRISFGEGRYGTPVWSPRGDMVAFTKQN----KGRFHIGVMRTDG 373
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ R L S P ++P+G+ I+FT + G S + ++ + + G
Sbjct: 374 SEERLLTAS---FLDEGPTWAPNGRVIMFTRESQGSSGRAL-----------LYSVDITG 419
Query: 656 SDLKRL-TQNSFEDGTPAWGP 675
+LK + T + D P+W P
Sbjct: 420 RNLKPVKTPDGASD--PSWSP 438
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 90/226 (39%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ V D DG + V+ LT + P SP G +++ S +G+ ++++D
Sbjct: 189 LAVMDYDGAN-VQYLTNSASIVLAPRFSPAGDRVLYTSYESGFPQIHVLDVGQVQRKVLS 247
Query: 543 ------------------------EGG---------EGYGLHRLTEGPWSDTMCNWSPDG 569
+GG E RLT P +T ++SPDG
Sbjct: 248 SGDGTMSFAPRFAPDGRTIVYSQTQGGNTDLFAMDIETGAKTRLTSAPSIETAPSFSPDG 307
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SGS ++Y++ P G G + I G GR P +SP G + FT
Sbjct: 308 SQIVFESDR----SGSQQLYVM-PAGGGEARRISFGE-GRYGTPVWSPRGDMVAFT---- 357
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++ DGS+ +RL SF D P W P
Sbjct: 358 ----------KQNKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 392
>gi|90418976|ref|ZP_01226887.1| tolB protein, periplasmic component, biopolymer transport system
[Aurantimonas manganoxydans SI85-9A1]
gi|90337056|gb|EAS50761.1| tolB protein, periplasmic component, biopolymer transport system
[Aurantimonas manganoxydans SI85-9A1]
Length = 436
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + FS + P + V+ +
Sbjct: 209 PRFSPSRQEVTYMSFGNGEPRVYLLQLETGQREIVGNFPGMTFSPRFSPDGQKVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ A RLT+ + PS SPDG+ IVF S R G + L
Sbjct: 266 ---LQQEGNANIYAMDLRS----RATTRLTSTTAIDTSPSYSPDGRRIVFESDRGGRQQL 318
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F++ ++ P+G+G
Sbjct: 319 YVM---GADGSGQQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGQFQIGVMRPDGSG 371
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F D G +++ I L G
Sbjct: 372 ERIL----TSGFHNEGPTWAPNGRVVMFFRDQRGGGGP------------QLYSIDLTGY 415
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ S+ PAW P
Sbjct: 416 NEQKIPTPSYAS-DPAWSP 433
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F +ES D + + + D DG + +R LT + P SP + + + S G +
Sbjct: 172 FVAESGTKDKRVKRLAIMDQDGAN-LRYLTDGSELVLTPRFSPSRQEVTYMSFGNGEPRV 230
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y++ E G+ + P +SPDG+ + + ++ G+ +Y +
Sbjct: 231 YLLQLETGQ---REIVGNFPGMTFSPRFSPDGQKVIMSLQQE----GNANIYAMDLRSRA 283
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG+ IVF SD GG +++ + DGS
Sbjct: 284 TTRL--TSTTAIDTSPSYSPDGRRIVFESDRGGRQ--------------QLYVMGADGSG 327
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 328 QQRI---SFGDGSYSTPVWSPR 346
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 38/183 (20%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR S +P
Sbjct: 247 PGM-TFSPRFSPDGQKVIMSLQQEGNANIYAMDL------RSRATTRLTSTTAIDTSPSY 299
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD R+ + RGG + DG+ Q + DGS+ P +SP+G
Sbjct: 300 SPDGRRIVFESDRGGRQQLYVMGADGSGQQRISF------------GDGSYSTPVWSPRG 347
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ DGS R + F N T W P V++ GGP+
Sbjct: 348 DLIAFTKQSGGQFQIGVMRPDGSGERILTSGFHNEGPT-WAPNGRVVMFFRDQRGGGGPQ 406
Query: 480 FAS 482
S
Sbjct: 407 LYS 409
>gi|407799319|ref|ZP_11146212.1| TolB [Oceaniovalibus guishaninsula JLT2003]
gi|407058504|gb|EKE44447.1| TolB [Oceaniovalibus guishaninsula JLT2003]
Length = 442
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
P FSP GDRI + FP +Y ++ +R + F+ + P + V+++
Sbjct: 214 PRFSPTGDRILYTSYETGFPQIYQLDVGNVSRVSLPVPAESMTFAPRYAPDGQTVIFS-- 271
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
A+ DI + +LT PS SPDG IVF S R+G
Sbjct: 272 ----AAMGGNTDIFRLRPG-----GGPEKLTNAPSIETAPSYSPDGSQIVFESDRSGTPQ 322
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIMDA GGE R++ G WSP G+ IAF + G F + ++ +G+
Sbjct: 323 LYIMDANGGEP---RRISFGQGRYGTPVWSPRGDLIAFTKQNE----GRFHIGVMRTDGS 375
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G +P ++ + + G
Sbjct: 376 EERLLTAS---FLDEGPTWAPNGRVLMFTRESAGAEGQP-----------ALYSVDISGR 421
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+++ T S D PAW P
Sbjct: 422 NLRKVPTPQSASD--PAWSP 439
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V+ LT P SP G I++ S TG+ +Y +D +
Sbjct: 191 LAVMDYDGAN-VQYLTDAASIVLAPRFSPTGDRILYTSYETGFPQIYQLDVGN-----VS 244
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R++ +++M ++PDG+ + F++ G+ +++ + P G G KL + S
Sbjct: 245 RVSLPVPAESMTFAPRYAPDGQTVIFSAAM----GGNTDIFRLRPGG-GPEKLTNAPSIE 299
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
A P +SPDG IVF SD G TP +++ + +G + +R++
Sbjct: 300 TA--PSYSPDGSQIVFESDRSG-------TP-------QLYIMDANGGEPRRISFGQGRY 343
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 344 GTPVWSPR 351
>gi|153005706|ref|YP_001380031.1| WD40 domain-containing protein [Anaeromyxobacter sp. Fw109-5]
gi|152029279|gb|ABS27047.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. Fw109-5]
Length = 357
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 114/266 (42%), Gaps = 50/266 (18%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDI--------- 489
+YV+ +DGS R+V T + P E +VY+S A + D
Sbjct: 83 LYVMGADGSGLRRVSRGKGRVTCGYFFPGGERIVYSSTHASAAECPPKPDHSKGYVWALY 142
Query: 490 -ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
+ DG GK NA +VS DG WIVF STR G LY M +G
Sbjct: 143 DYQLYTARPDGSDLAPLAPAPGKYNAEATVSKDG-WIVFTSTRDGDLELYKMRLDGS--- 198
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------------GSFEMYLIH 592
GL RLT P D +S DG I F + R + G E++ ++
Sbjct: 199 GLVRLTHTPGYDGGAFFSADGRRIVFRASRPTTEAELADYRALLGEGLVRPGKLELFTMN 258
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+G+ +R++ + G+A A P+F PDG+ IVF S+ G P G F +
Sbjct: 259 ADGSDVRQVTRLGAASFA--PFFHPDGRRIVFASNVG-------------DPRGRNFDLY 303
Query: 653 L---DGSDLKRLTQNSFEDGTPAWGP 675
+ DG+ L+R+T N DG P + P
Sbjct: 304 VVNDDGTGLERITTNETFDGFPMFSP 329
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 28/152 (18%)
Query: 497 VDGVSAVRRLTTNGKNN-AFPSVSPDGKWIVFRSTRT--------------------GYK 535
+DG VR T G + AF S DG+ IVFR++R G
Sbjct: 195 LDGSGLVRLTHTPGYDGGAF--FSADGRRIVFRASRPTTEAELADYRALLGEGLVRPGKL 252
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
L+ M+A+G + + RL ++ + PDG I FAS+ +P +F++Y+++ +G
Sbjct: 253 ELFTMNADGSDVRQVTRLGAASFAPF---FHPDGRRIVFASNVGDPRGRNFDLYVVNDDG 309
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
TGL ++ + + P FSPDGK +VF S+
Sbjct: 310 TGLERITTNETF--DGFPMFSPDGKRLVFASN 339
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRST--RTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
VR+LT G+N A S DG+ +VF++T G LY+M G +G GL R++ G
Sbjct: 48 VRQLTFGGEN-AEAYFSFDGRELVFQATPEGAGCDQLYVM---GADGSGLRRVSRGKGRV 103
Query: 561 TMCNWSPDGEWIAFASDRDNPGSG---------------SFEMYLIHPNGTGLRKLIQSG 605
T + P GE I ++S + +++Y P+G+ L L +
Sbjct: 104 TCGYFFPGGERIVYSSTHASAAECPPKPDHSKGYVWALYDYQLYTARPDGSDLAPLAPA- 162
Query: 606 SAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G+ N S DG IVFTS G E++K++LDGS L RLT
Sbjct: 163 -PGKYNAEATVSKDGW-IVFTSTRDGDL--------------ELYKMRLDGSGLVRLTHT 206
Query: 665 SFEDG 669
DG
Sbjct: 207 PGYDG 211
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF- 624
S DG WI F S RD G E+Y + +G+GL +L + G +FS DG+ IVF
Sbjct: 173 SKDG-WIVFTSTRD----GDLELYKMRLDGSGLVRLTHT--PGYDGGAFFSADGRRIVFR 225
Query: 625 ---------TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+DY + E + P + E+F + DGSD++++T+ P + P
Sbjct: 226 ASRPTTEAELADYRALLGEGLVRPGKL----ELFTMNADGSDVRQVTRLGAASFAPFFHP 281
Query: 676 RFIRPVDVEEVKNEQCAFEDCHWLNE 701
R V V + + D + +N+
Sbjct: 282 DGRRIVFASNVGDPRGRNFDLYVVND 307
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTS--GGPEFASESSEVDIISINVDD 496
++ +N+DGS+ RQV A F+ + P +V+ S G P D+ +N D
Sbjct: 254 LFTMNADGSDVRQVTRLGAASFAPFFHPDGRRIVFASNVGDPR----GRNFDLYVVNDDG 309
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMD 541
+ + R+TTN + FP SPDGK +VF S R G N++I D
Sbjct: 310 ----TGLERITTNETFDGFPMFSPDGKRLVFASNRNASRPGETNVFIAD 354
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST----RTGYKNLYIMD 541
++++ ++N D D VR++T G + P PDG+ IVF S R +LY+++
Sbjct: 251 KLELFTMNADGSD----VRQVTRLGAASFAPFFHPDGRRIVFASNVGDPRGRNFDLYVVN 306
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+G GL R+T D +SPDG+ + FAS+R+ G +++
Sbjct: 307 DDG---TGLERITTNETFDGFPMFSPDGKRLVFASNRNASRPGETNVFI 352
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 176 GEYLIYVSTH----ENPGTPRTSWA---AVYSTELKTGLTRRLTPYGVADFSPAVSPSGK 228
GE ++Y STH E P P S A+Y +L T P G +D +P GK
Sbjct: 112 GERIVYSSTHASAAECPPKPDHSKGYVWALYDYQLYTA-----RPDG-SDLAPLAPAPGK 165
Query: 229 YTAVASYGNKGWDGEVEMLSTDIYIFLTR-DGTQRVKIVE----NGGWPCWVDESTLFFH 283
Y A A+ GW D+ ++ R DG+ V++ +GG D + F
Sbjct: 166 YNAEATVSKDGWIVFTSTRDGDLELYKMRLDGSGLVRLTHTPGYDGGAFFSADGRRIVFR 225
Query: 284 --RKSEEDDWISVYKVILPQTGLV----------STESVSIQRVTPPGLHAFTPATSPGN 331
R + E + ++ Y+ +L + GLV + + +++VT G +F P P +
Sbjct: 226 ASRPTTEAE-LADYRALLGE-GLVRPGKLELFTMNADGSDVRQVTRLGAASFAPFFHP-D 282
Query: 332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391
+ I A+ R+ +L+ +V + L R + +T P SPD R+ + R
Sbjct: 283 GRRIVFASNVGDPRGRNFDLY-VVNDDGTGLERITTNETFDGFPMFSPDGKRLVFASNRN 341
Query: 392 GS 393
S
Sbjct: 342 AS 343
>gi|296117355|ref|ZP_06835945.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769]
gi|295976121|gb|EFG82909.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769]
Length = 457
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 418 RFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAV 471
++D P F+P +AF+ + P VY+ N + +R + + +F+ + P +AV
Sbjct: 220 QWDTITPRFNPANSELAFMSYINNRPRVYLFNLNTGQQRMLGEFSGMSFAPRFSPRGDAV 279
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
V + + S D+ S+++ + + ++T +G + P SPDG IVF S R
Sbjct: 280 VLS------VTRGSGSDLYSVDLSSM----SRHQITASGAIDTSPCYSPDGSQIVFNSDR 329
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G LY+M A GG+ R++ G WSP G+ IAF+ +GSF + ++
Sbjct: 330 GGSPQLYVMPATGGDA---KRISYGHGHYGSPVWSPRGDLIAFS----RIANGSFSLGVM 382
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
P+GTG R L Q + P F P+G+ + F
Sbjct: 383 APDGTGERILTQGFT---VESPTFCPNGRVLAF 412
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + R LT+ + P +P + F S +Y+ + G+ L
Sbjct: 203 LAIMDQDGADS-RYLTSGQWDTITPRFNPANSELAFMSYINNRPRVYLFNLNTGQQRMLG 261
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ ++ +SP G+ + + R GSGS ++Y + + ++ SG+
Sbjct: 262 EFSGMSFAP---RFSPRGDAVVLSVTR---GSGS-DLYSVDLSSMSRHQITASGAI--DT 312
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG IVF SD GG +P +++ + G D KR++ G+P
Sbjct: 313 SPCYSPDGSQIVFNSDRGG-------SP-------QLYVMPATGGDAKRISYGHGHYGSP 358
Query: 672 AWGPR 676
W PR
Sbjct: 359 VWSPR 363
>gi|288957825|ref|YP_003448166.1| TolB protein [Azospirillum sp. B510]
gi|288910133|dbj|BAI71622.1| TolB protein [Azospirillum sp. B510]
Length = 450
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 37/259 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N D + R++V + F+ + P V+ +
Sbjct: 219 PRFSPTSQEITYMSYFNKKPRVYLFNID-TGRQEVLGDFPGMTFAPRFSPDGNKVIMS-- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+++ DI ++++ +LT + PS SPDG+ IVF S R G +
Sbjct: 276 ----MAQNGNTDIYTLDLR----TRRQTQLTDAPGIDTAPSYSPDGQRIVFESDRGGTQQ 327
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM G +G G+ RLT G WSP G+ IAF R + SF + +I P+GT
Sbjct: 328 LYIM---GADGSGVKRLTFGEGRYGTPVWSPRGDLIAFTRQRGS----SFAVGVIRPDGT 380
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L + A P ++P+G+ ++F D + + +++ I + G+
Sbjct: 381 GERILTE---AFHVEGPTWAPNGRVLMFFKD--------LPSGDGRGRNAKLYSIDITGA 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R++ + PAW P
Sbjct: 430 NERRVS-TPVDASDPAWSP 447
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLY 538
+ +ES + + +D SA + T+G+ P SP + I + S +Y
Sbjct: 182 YVAESGPANARKKQLAIMDQDSANHQFLTDGQTLVLTPRFSPTSQEITYMSYFNKKPRVY 241
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ + + G L + P +SPDG + + ++ G+ ++Y +
Sbjct: 242 LFNIDTGR---QEVLGDFPGMTFAPRFSPDGNKVIMSMAQN----GNTDIYTLDLRTR-- 292
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
R+ + + G P +SPDG+ IVF SD GG +++ + DGS +
Sbjct: 293 RQTQLTDAPGIDTAPSYSPDGQRIVFESDRGGTQ--------------QLYIMGADGSGV 338
Query: 659 KRLTQNSFEDGTPAWGPR 676
KRLT GTP W PR
Sbjct: 339 KRLTFGEGRYGTPVWSPR 356
>gi|254294964|ref|YP_003060987.1| hypothetical protein Hbal_2615 [Hirschia baltica ATCC 49814]
gi|254043495|gb|ACT60290.1| WD40 domain protein beta Propeller [Hirschia baltica ATCC 49814]
Length = 648
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 214/547 (39%), Gaps = 93/547 (17%)
Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--------PYGVADF-SPAVSPS 226
G+ + +VST E ++ V+ +L+TG LT P F P+ SP
Sbjct: 142 GKKIAFVSTREG------YFSNVWIKDLETGELTNLTGAEHIQGDPMLPNSFLRPSWSPD 195
Query: 227 GKYTAVASYGNKGWDGE--------VEMLSTDIYIFLTRDGTQRVKIVE----NGGWPCW 274
GK+ A +S N W G + LS IY+ + DG ++V + G P W
Sbjct: 196 GKWIAFSSDRNTNWRGHDYPIGWEHTQELS--IYV-IGADGQNFRRLVSKPEMSYGSPSW 252
Query: 275 V-DESTLFFHRKSEEDDW-ISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPG-- 330
D + F+ + ED W Y ++ T +++ V R SP
Sbjct: 253 SPDGKRISFYAITTEDTWGARRYNLVQDTTSQIASVDVETGRDYIEHTSGKGVKISPVYI 312
Query: 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP--KTHHLNPFISPDSSRVGYHK 388
+N I + P +N+ I T +P K + P + D S+V Y +
Sbjct: 313 SNDKIGYVNKGP-------------ENEGIYYTDGSTPILKKNVREPIWTQDGSQVIYEQ 359
Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE---FPGVYVVN 445
+ R DG ++ S P+ D FP S + D I + + V++
Sbjct: 360 V-DHTRRPDG------VDLYSWDPEWEYKHID-VFPLLSSQ-DEIVISDKKNIGNLVVLD 410
Query: 446 SDGSNRRQVY----------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
DG N R +Y A+ W E V + G + + +
Sbjct: 411 RDGKNPRTIYEVTKESTKTPYLLGTGLVGAYQPSWSRDGEWVTFCVGTFFYKRYDAPARV 470
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + D + +R +T +N FPS S DGK IV+R L I + E E
Sbjct: 471 MMVRRDG----TGLREVTHGEENAGFPSFSADGKEIVYRVWDKENIGLRIYNIEKDE--- 523
Query: 550 LHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
HR LTE D + +SPDG I F G +++Y I P+GT L +L S
Sbjct: 524 -HRVLTET--GDNLPAYSPDGTRILFTRRH---GHADYDLYTIKPDGTDLVRLTTHPSGD 577
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
H +S DG I+++ G E +Q YG+I+ + DGS+ +T + +ED
Sbjct: 578 --GHAVWSNDGSKIMWSGSVYGFRDEAALYDDTFQQYGQIWVMNADGSNKHMVTDSKWED 635
Query: 669 GTPAWGP 675
P + P
Sbjct: 636 SMPLYVP 642
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
+Y+ N+DG+N R++ +N TV++ Y++ E AS+ + V S + DG
Sbjct: 66 LYISNADGTNERKLLGEN---TVFE-------YSA---ELASDGTSVYFTSER--NGDGN 110
Query: 501 SAVRRLTTNGKN----------NAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYG 549
S + + +G N S+SPDGK I F STR GY N++I D E GE
Sbjct: 111 SELFKANIDGSNIEEVVSSSSVEDAVSISPDGKKIAFVSTREGYFSNVWIKDLETGE--- 167
Query: 550 LHRLT--EGPWSDTMC-------NWSPDGEWIAFASDRDNPGSG-----------SFEMY 589
L LT E D M +WSPDG+WIAF+SDR+ G +Y
Sbjct: 168 LTNLTGAEHIQGDPMLPNSFLRPSWSPDGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIY 227
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+I +G R+L+ + P +SPDGK I F
Sbjct: 228 VIGADGQNFRRLVSKPEMSYGS-PSWSPDGKRISF 261
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 21/195 (10%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
+ + DG + + L N ++ DG + F S R G N + A +G + +
Sbjct: 68 ISNADGTNERKLLGENTVFEYSAELASDGTSVYFTSERNGDGNSELFKANI-DGSNIEEV 126
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-- 611
+ + SPDG+ IAF S R+ G F I TG + + +
Sbjct: 127 VSSSSVEDAVSISPDGKKIAFVSTRE----GYFSNVWIKDLETGELTNLTGAEHIQGDPM 182
Query: 612 ------HPYFSPDGKSIVFTSD----YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
P +SPDGK I F+SD + G PI H + I+ I DG + +RL
Sbjct: 183 LPNSFLRPSWSPDGKWIAFSSDRNTNWRG-HDYPIGWEHTQEL--SIYVIGADGQNFRRL 239
Query: 662 TQN-SFEDGTPAWGP 675
G+P+W P
Sbjct: 240 VSKPEMSYGSPSWSP 254
>gi|347526632|ref|YP_004833379.1| TolB protein [Sphingobium sp. SYK-6]
gi|345135313|dbj|BAK64922.1| TolB protein [Sphingobium sp. SYK-6]
Length = 447
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 45/261 (17%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGG 477
P +SP IA+V + G +Y+ + D +R + N F+ W P ++Y+
Sbjct: 220 PRWSPDYKSIAYVSYVGKTVRIYIYDVDQGRQRAILETNNAVFAPRWSPDGRTLLYS--- 276
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ DI I V+ V RLT N S SPDG IVF S R+G + +
Sbjct: 277 ---MASGGNTDIYKIGVNGGRPV----RLTNTPGINVGGSFSPDGARIVFESDRSGGQQI 329
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G + R++ G WSP G+ IAF +G+F + ++ P+G G
Sbjct: 330 YVMNADGSD---QRRISFGGGRYATPEWSPRGDLIAFTKI-----AGNFRIGVMSPSG-G 380
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF---TSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+L+ +G A P +SP+G+ + F + GG S+ I+++ L
Sbjct: 381 NERLLTNGWQDEA--PTWSPNGRVLQFFRTSQGRGGRSS--------------IWQVDLT 424
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +L+++ Q + PAWGP
Sbjct: 425 GVNLRQI-QTPVDGSDPAWGP 444
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ A P SPD K I + S +YI D + G +
Sbjct: 197 LAIMDSDG--ANHRFITNGQSLALTPRWSPDYKSIAYVSYVGKTVRIYIYDVDQGRQRAI 254
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++ WSPDG + ++ G+ ++Y I NG R + + + G
Sbjct: 255 LETNNAVFAP---RWSPDGRTLLYSM----ASGGNTDIYKIGVNGG--RPVRLTNTPGIN 305
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
FSPDG IVF SD G +I+ + DGSD +R++ T
Sbjct: 306 VGGSFSPDGARIVFESDRSGGQ--------------QIYVMNADGSDQRRISFGGGRYAT 351
Query: 671 PAWGPR 676
P W PR
Sbjct: 352 PEWSPR 357
>gi|220915811|ref|YP_002491115.1| TolB domain-containing protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|254764837|sp|B8JD21.1|TOLB_ANAD2 RecName: Full=Protein TolB; Flags: Precursor
gi|219953665|gb|ACL64049.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 434
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P + +T SE ++ + V DG A R+LT++
Sbjct: 239 PLGRHRNAFGGVYSPDGSRIAFTV---------SEGNVTDLWVMSADGAGA-RKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVSPDSGAINRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G HR G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRHRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGAGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>gi|92118972|ref|YP_578701.1| translocation protein TolB [Nitrobacter hamburgensis X14]
gi|118574587|sp|Q1QHQ6.1|TOLB_NITHX RecName: Full=Protein TolB; Flags: Precursor
gi|91801866|gb|ABE64241.1| TolB-like protein [Nitrobacter hamburgensis X14]
Length = 450
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 223 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFAPDGQRIIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDGGRICFESDRGGRPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + +I P+G+G
Sbjct: 333 YVMGATGGAA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIIKPDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG S ++ I + G
Sbjct: 386 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGGNSGP------------SLYTIDVSGR 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++ F PAW P
Sbjct: 430 NELKVPTPGFAS-DPAWSP 447
>gi|148258089|ref|YP_001242674.1| translocation protein TolB [Bradyrhizobium sp. BTAi1]
gi|146410262|gb|ABQ38768.1| protein tolB precursor [Bradyrhizobium sp. BTAi1]
Length = 462
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY++N + R V + +FS + P + ++ +
Sbjct: 235 PRFSPSSQEITYMEFGQGDPKVYLLNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 291
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + P SPDG I F S R G +
Sbjct: 292 ---LQQGGNSNLFVMDLRS----RTTTRLTDTPAIDTSPCYSPDGNQICFESDRGGKPQI 344
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 345 YVMPANGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 397
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPIST 638
R L ++G N P FSP+G+ ++F D GG + + T
Sbjct: 398 ERIL----TSGFHNEGPTFSPNGRVLMFFRDPGGTAGPSLYT 435
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 198 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSSQEITYMEFGQGDPKV 256
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+++ E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 257 YLLNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRT 309
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG I F SD GG +P +I+ + +G
Sbjct: 310 TTRLTDTPAI--DTSPCYSPDGNQICFESDRGG------------KP--QIYVMPANGGG 353
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 354 AQRISFGEGSYSTPVWSPR 372
>gi|414175500|ref|ZP_11429904.1| protein tolB [Afipia broomeae ATCC 49717]
gi|410889329|gb|EKS37132.1| protein tolB [Afipia broomeae ATCC 49717]
Length = 465
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 43/259 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + +V +
Sbjct: 240 PRFSPSTQEITYMEFGQGDPRVYLFNVETGQREIVGNFPGMSFSPRFSPDGQRIVMS--- 296
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ ++ RLT + PS +PDG I F S R G +
Sbjct: 297 ---MQQGGNSNLFVMDLRS----KSMTRLTDTPAIDTSPSYAPDGGRICFESDRGGKPQI 349
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 350 YVMGANGGAA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 402
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F + GG + ++ + + G
Sbjct: 403 ERIL----TSGFHNEGPTFAPNGRVVMFFREAGGGPS--------------LYTVDISGR 444
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ F PAW P
Sbjct: 445 NEQKVPTPGFAS-DPAWSP 462
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F E+ D + + + D DG + VR LT P SP + I + G +
Sbjct: 203 FVDETGPKDRRVKRLAMMDQDGAN-VRYLTRGADLVLTPRFSPSTQEITYMEFGQGDPRV 261
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 262 YLFNVETGQREIVGNF---PGMSFSPRFSPDGQRIVMSMQQ----GGNSNLFVMDLRSKS 314
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ +L + + P ++PDG I F SD GG +P +I+ + +G
Sbjct: 315 MTRLTDTPAID--TSPSYAPDGGRICFESDRGG------------KP--QIYVMGANGGA 358
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 359 AQRISFGEGSYSTPVWSPR 377
>gi|374291388|ref|YP_005038423.1| periplasmic protein of the Tol-Pal system [Azospirillum lipoferum
4B]
gi|357423327|emb|CBS86177.1| Periplasmic protein of the Tol-Pal system [Azospirillum lipoferum
4B]
Length = 450
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 37/259 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N D + R++V + F+ + P V+ +
Sbjct: 219 PRFSPTSQEITYMSYFNKKPRVYLFNID-TGRQEVLGDFPGMTFAPRFSPDGNKVIMS-- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+++ DI ++++ +LT + PS SPDG+ IVF S R G +
Sbjct: 276 ----MAQNGNTDIYTLDLR----TRRQTQLTDAPGIDTAPSYSPDGQRIVFESDRGGTQQ 327
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M G +G G+ RLT G WSP G+ IAF R + SF + +I P+GT
Sbjct: 328 LYVM---GADGSGVKRLTFGEGRYGTPVWSPRGDLIAFTRQRGS----SFAVGVIRPDGT 380
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L + A P ++P+G+ ++F D + + +++ I + G+
Sbjct: 381 GERILTE---AFHVEGPTWAPNGRVLMFFKD--------LPSGDGRGRNAKLYSIDITGA 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R++ + + PAW P
Sbjct: 430 NERRVS-SPVDASDPAWSP 447
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLY 538
+ +ES + + +D SA + T+G+ P SP + I + S +Y
Sbjct: 182 YVAESGPANARKKQLAIMDQDSANHQFLTDGQTLVLTPRFSPTSQEITYMSYFNKKPRVY 241
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ + + G L + P +SPDG + + ++ G+ ++Y +
Sbjct: 242 LFNIDTGR---QEVLGDFPGMTFAPRFSPDGNKVIMSMAQN----GNTDIYTLDLRTR-- 292
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
R+ + + G P +SPDG+ IVF SD GG +++ + DGS +
Sbjct: 293 RQTQLTDAPGIDTAPSYSPDGQRIVFESDRGGTQ--------------QLYVMGADGSGV 338
Query: 659 KRLTQNSFEDGTPAWGPR 676
KRLT GTP W PR
Sbjct: 339 KRLTFGEGRYGTPVWSPR 356
>gi|319943002|ref|ZP_08017285.1| TolB protein [Lautropia mirabilis ATCC 51599]
gi|319743544|gb|EFV95948.1| TolB protein [Lautropia mirabilis ATCC 51599]
Length = 425
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 55/266 (20%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VW--DPVREAVVYTS 475
P++SP G R+A+V F P VYV + R+ V FK + S W D AV T
Sbjct: 198 PAWSPDGKRLAYVSFETKKPVVYVHDLASGQRKAVAKFKGSNSAPAWSHDGRSLAVTLTR 257
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G S++ +S DG + RRLT + + P SPDGK++ F S R G
Sbjct: 258 DG------GSQIYQVS-----ADGGESARRLTQSSSIDTEPVYSPDGKFLYFTSDRGGAP 306
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y M + GG R+T G + SPDG+ +A+ + R+ G F + L
Sbjct: 307 QIYRMPSNGGAA---SRVTFGSSYNVSPRISPDGQQMAYVTQRN----GRFLIAL----- 354
Query: 596 TGLRKLIQSG------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
K +QSG G P F+P+G+ +++T+ GG +Y +
Sbjct: 355 ----KDLQSGDETLLTDTGEEESPSFAPNGQWVMYTTRAGG---------REY-----LM 396
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG +RL+ ++ PAWGP
Sbjct: 397 AVSTDGRVKQRLSSSTSSVREPAWGP 422
>gi|350630406|gb|EHA18778.1| hypothetical protein ASPNIDRAFT_42599 [Aspergillus niger ATCC 1015]
Length = 675
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 424 PSFSPKGDRIAFVEFPGV---YVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGG 477
P KG + PG+ YV N+DGSN R + + + W P E +V+TS
Sbjct: 42 PVAGKKGAMLMNRIAPGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTS-- 99
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-N 536
E A + + D+ + + D ++ + T+ ++SP+G + F T YK N
Sbjct: 100 -ERAGDG-QSDLYRVRPNGTD----LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSN 153
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSG------ 584
++I D E G + + TE T+ + WSPDGEW+ F SDR+ P G
Sbjct: 154 IWIQDLETGALWNVTNSTEVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISG 213
Query: 585 -----SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+Y I P+GTG R++ + + P FSPDG IVF
Sbjct: 214 WEHTQELSIYAIRPDGTGFRRVANRTGYCQGS-PKFSPDGNRIVF 257
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 58/345 (16%)
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFD 420
R S +H +P SPD + Y R I PL S +RF
Sbjct: 349 RNASLVGYHRSPAWSPDGRHMVYEHVEWDPVRP----------INKPLYSWSKDWEYRFT 398
Query: 421 GSFPSFSPKGDRIAFVEFPGV----YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
FP S +G ++ + V +N+DG+ ++ + F PVR T+G
Sbjct: 399 DVFPQMSAQG-KVVYTSQQTVNSSLVTMNADGTGSNDIFDGSRF-----PVRVNSSNTNG 452
Query: 477 GPEFASESSEVDIISINVDD--------------VDGVSAVRRLTTNGKNNA-FPSVSPD 521
+ S + +++++ + D V + R TNG NA FP++SPD
Sbjct: 453 TFQ-GSWRGDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPD 511
Query: 522 GKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-EWIAF 574
G+W+V+R L MD G+ L W +T ++PDG I F
Sbjct: 512 GRWLVWREFAYSASEDPIPLGLRRMDLTTGDVVAL----SSSWDNTPM-FAPDGSNRIVF 566
Query: 575 ASDRDNPGSG----SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
P SG ++++ + +G+ +R+L + A H ++ +GK I + + G
Sbjct: 567 TRRTSWPISGPLDDNYDVMTMAVDGSDVRQLTK--LACNDAHAVWTHEGK-IAWATGMFG 623
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E + QPY I +++ DGS+ LTQ+ +ED P + P
Sbjct: 624 FQDEATIYDNNQQPYPFIMQMEADGSNWTVLTQSRWEDTMPLYIP 668
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 21/209 (10%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGE 546
I + V + DG + L + SPDG+WIVF S R G +LY + G +
Sbjct: 59 ISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTD 118
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L + P + SP+G +AFA N S + I TG + + +
Sbjct: 119 ---LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIW----IQDLETGALWNVTNST 171
Query: 607 AGRANH--------PYFSPDGKSIVFTSDYGG--ISAEPISTPHQYQPYGEIFKIKLDGS 656
++ P +SPDG+ +VFTSD IS Q I+ I+ DG+
Sbjct: 172 EVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQEL-SIYAIRPDGT 230
Query: 657 DLKRLTQNS-FEDGTPAWGPRFIRPVDVE 684
+R+ + + G+P + P R V E
Sbjct: 231 GFRRVANRTGYCQGSPKFSPDGNRIVFYE 259
>gi|119896708|ref|YP_931921.1| translocation protein TolB [Azoarcus sp. BH72]
gi|166229974|sp|A1K2H9.1|TOLB_AZOSB RecName: Full=Protein TolB; Flags: Precursor
gi|119669121|emb|CAL93034.1| putative translocation protein TolB [Azoarcus sp. BH72]
Length = 427
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYT 474
P++SP G R+A+V F P +Y V++ + +RQV FK + S W P + +VV T
Sbjct: 200 PAWSPDGGRLAYVSFEAKKPIIY-VHTLATGQRQVVANFKGSNSAPAWSPDGQQLSVVLT 258
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G + + V + DG S VRRL ++ + P+ SPDG+WI F S R G
Sbjct: 259 KDG-----------LSQLYVLNADG-SGVRRLASSSGIDTEPAWSPDGQWIYFTSDRGGS 306
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y + GG R+T + S DG +AF + R+N G F++ + +
Sbjct: 307 PQIYRIPTAGGAA---QRVTFDGTYNVTARPSADGRLLAFIT-RNN---GRFQVAV--QD 357
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
T + I + SA R P F+P+G+ I++ +D GG G + + D
Sbjct: 358 LTTRQTTILTDSA-RDESPSFAPNGRMILYATDAGG--------------RGVLAAVSSD 402
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +RL+ + + PAWGP
Sbjct: 403 GRVKQRLSVQAADVREPAWGP 423
>gi|312115991|ref|YP_004013587.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Rhodomicrobium vannielii ATCC 17100]
gi|311221120|gb|ADP72488.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium
vannielii ATCC 17100]
Length = 435
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 123/305 (40%), Gaps = 79/305 (25%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLL-LENIKSPLPDISLFRFDGSFPSFSPKGD 431
L P P S + Y R G R N + E + P++S P FSP+GD
Sbjct: 205 LTPRFHPLSQEITYTAYRNGEPRVMLRNIMTGQEEVLGDFPNMSFA------PRFSPQGD 258
Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
R+ V + GS+ N F E+D+ S
Sbjct: 259 RV-------VMSLQEGGSS-------NIF-------------------------ELDVRS 279
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ RLT + P SPDG+ IVF S R G + LY+M+A+G G
Sbjct: 280 ---------RRMMRLTQTNAIDTAPCYSPDGRQIVFESDREGKQQLYVMNADGS---GQR 327
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
R+T G + WSP G+ IAF G F + +I P+G+G R L + G N
Sbjct: 328 RITFGDGRYSTPVWSPRGDLIAFTKQV----PGGFAIGVIRPDGSGERVLTE----GYHN 379
Query: 612 H-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SP+G+ I+F + GG + ++F I L G + +++ SF
Sbjct: 380 EGPTWSPNGRVILFFRESGGANGG-----------AKLFSIDLTGYNERQMPTPSF-GSD 427
Query: 671 PAWGP 675
PAW P
Sbjct: 428 PAWSP 432
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+ + + D DG + RL T G+ P P + I + + R G + + + G+
Sbjct: 181 VKRLAIMDQDGANL--RLLTQGRELVLTPRFHPLSQEITYTAYRNGEPRVMLRNIMTGQE 238
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
L + P +SP G+ + + GS ++ + + +L Q+ +
Sbjct: 239 ---EVLGDFPNMSFAPRFSPQGDRVVMSLQE----GGSSNIFELDVRSRRMMRLTQTNAI 291
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
A P +SPDG+ IVF SD G +++ + DGS +R+T
Sbjct: 292 DTA--PCYSPDGRQIVFESDREGKQ--------------QLYVMNADGSGQRRITFGDGR 335
Query: 668 DGTPAWGPR 676
TP W PR
Sbjct: 336 YSTPVWSPR 344
>gi|260576644|ref|ZP_05844631.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp.
SW2]
gi|259021129|gb|EEW24438.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp.
SW2]
Length = 445
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P FSP GDRI F FP +Y+++ R + + F+ + P VV++
Sbjct: 216 PRFSPSGDRILFTSYTSGFPQIYLMDVGSLQTRSLEEQPGTMTFAPRFAPDGRTVVFS-- 273
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
DI +++ + +LT PS SPDG IVF S R+G +
Sbjct: 274 ----LERGGNTDIYTVDTQS----GTLSQLTDAPSIETAPSYSPDGSKIVFESDRSGTQQ 325
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G++IAF + G F + ++ +G+
Sbjct: 326 LYVMSAGGGE---PRRISNGAGRYGTPVWSPRGDYIAFTKQNE----GRFHIGVMLTDGS 378
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ L S P ++P+G+ I+FT + G +P ++ + + G
Sbjct: 379 EEKLLTAS---FLDEGPTWAPNGRVIMFTREQAGEGGQP-----------ALYSVDISGR 424
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+++ T+ D PAW P
Sbjct: 425 NLRQISTETPASD--PAWSP 442
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V LT + P SP G I+F S +G+ +Y+MD +
Sbjct: 193 LGVMDYDGAN-VAYLTDSASIVLAPRFSPSGDRILFTSYTSGFPQIYLMDVGSLQ---TR 248
Query: 552 RLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L E P + T ++PDG + F+ +R G+ ++Y + L +L + S A
Sbjct: 249 SLEEQPGTMTFAPRFAPDGRTVVFSLER----GGNTDIYTVDTQSGTLSQLTDAPSIETA 304
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF SD G +++ + G + +R++ + GT
Sbjct: 305 --PSYSPDGSKIVFESDRSGTQ--------------QLYVMSAGGGEPRRISNGAGRYGT 348
Query: 671 PAWGPR 676
P W PR
Sbjct: 349 PVWSPR 354
>gi|83943918|ref|ZP_00956375.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36]
gi|83954491|ref|ZP_00963202.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1]
gi|83840775|gb|EAP79946.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1]
gi|83845165|gb|EAP83045.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36]
Length = 440
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 116/263 (44%), Gaps = 47/263 (17%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDRI + FP +YV++ RR + +F+ + P VVY+
Sbjct: 211 PRFSPSGDRILYTSYESGFPRIYVLDIGSVQRRVLESAEGTMSFAPRFSPSGNTVVYS-- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ DI +++++ RLT PS SPDG IVF S R+G +
Sbjct: 269 ----LTQGGNTDIYTMDIN----TGQSTRLTNTPAIETAPSYSPDGSRIVFESDRSGSQQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ +AF G F + ++ +G+
Sbjct: 321 LYIMPATGGEA---TRISFGEGRYGTPVWSPRGDLVAFTKQN----KGRFHIGVMRLDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF---TSDYGGISAEPISTPHQYQPYGEIFKIKL 653
R L S P ++P+G+ I+F T GG S+ ++ + +
Sbjct: 374 EERLLTAS---FLDEGPTWAPNGRVIMFARETQGAGGASS--------------LYSVDI 416
Query: 654 DGSDLKRL-TQNSFEDGTPAWGP 675
G +LK + TQ D P+W P
Sbjct: 417 SGRNLKPVRTQEGGSD--PSWSP 437
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 90/226 (39%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------E 543
+ V D DG + VR LT + P SP G I++ S +G+ +Y++D E
Sbjct: 188 LAVMDYDGAN-VRYLTDSSSIVLAPRFSPSGDRILYTSYESGFPRIYVLDIGSVQRRVLE 246
Query: 544 GGEG----------------YGL------------------HRLTEGPWSDTMCNWSPDG 569
EG Y L RLT P +T ++SPDG
Sbjct: 247 SAEGTMSFAPRFSPSGNTVVYSLTQGGNTDIYTMDINTGQSTRLTNTPAIETAPSYSPDG 306
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SGS ++Y++ G ++ S GR P +SP G + FT
Sbjct: 307 SRIVFESDR----SGSQQLYIMPATGGEATRI--SFGEGRYGTPVWSPRGDLVAFT---- 356
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I ++LDGS+ +RL SF D P W P
Sbjct: 357 ----------KQNKGRFHIGVMRLDGSE-ERLLTASFLDEGPTWAP 391
>gi|254512269|ref|ZP_05124336.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae
bacterium KLH11]
gi|221535980|gb|EEE38968.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae
bacterium KLH11]
Length = 439
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P +Y+++ R+++ + +FS + P ++VY+
Sbjct: 210 PRFSPSGDRLLYTSYETGQPRIYLLDVGRVQRQELPTEAGTMSFSPRFSPDGRSIVYS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ D+ +++ V RLT PS SPDG IVF S R+G
Sbjct: 268 ----LSQGGNTDLWKMDLATRQSV----RLTNTPAIETAPSYSPDGSQIVFESDRSGSPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ NG
Sbjct: 320 LYIMPATGGEA---TRISFGQGRYGTPVWSPRGDLIAFTKQN----KGRFHIGVMRTNGD 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGR-----------SALYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + T + D P+WGP
Sbjct: 419 NLRPVRTPDGGSD--PSWGP 436
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 91/240 (37%), Gaps = 66/240 (27%)
Query: 480 FASESSEVDI--ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP G +++ S TG +
Sbjct: 173 FVSESGPKDQRRKRLAIMDYDGAN-VQYLTDSAAIVLAPRFSPSGDRLLYTSYETGQPRI 231
Query: 538 YIMDA----------EGGEG--------------YGLH------------------RLTE 555
Y++D E G Y L RLT
Sbjct: 232 YLLDVGRVQRQELPTEAGTMSFSPRFSPDGRSIVYSLSQGGNTDLWKMDLATRQSVRLTN 291
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +T ++SPDG I F SDR SGS ++Y++ G ++ S GR P +
Sbjct: 292 TPAIETAPSYSPDGSQIVFESDR----SGSPQLYIMPATGGEATRI--SFGQGRYGTPVW 345
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP G I FT Q + I ++ +G D +RL SF D P W P
Sbjct: 346 SPRGDLIAFT--------------KQNKGRFHIGVMRTNG-DEERLLTASFLDEGPTWSP 390
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 106/255 (41%), Gaps = 40/255 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVA--TRRPTSSYRHIELFDLVKNKFIE 361
++ + ++Q +T P SP ++ + + T +P I L D+ + + E
Sbjct: 189 IMDYDGANVQYLTDSAAIVLAPRFSPSGDRLLYTSYETGQP-----RIYLLDVGRVQRQE 243
Query: 362 LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFR 418
L T +P SPD + Y +GG+T + D + + +P + +
Sbjct: 244 LP--TEAGTMSFSPRFSPDGRSIVYSLSQGGNTDLWKMDLATRQSVRLTNTPAIETA--- 298
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVV 472
PS+SP G +I F P +Y++ + G ++ F + + T VW P + +
Sbjct: 299 -----PSYSPDGSQIVFESDRSGSPQLYIMPATGGEATRISFGQGRYGTPVWSPRGDLIA 353
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR 531
+T + ++ N D+ RL T + P+ SP+G+ I+F R T+
Sbjct: 354 FTKQN----KGRFHIGVMRTNGDE-------ERLLTASFLDEGPTWSPNGRVIMFTRETQ 402
Query: 532 --TGYKNLYIMDAEG 544
+G LY +D G
Sbjct: 403 GASGRSALYSVDISG 417
>gi|407787512|ref|ZP_11134653.1| translocation protein TolB [Celeribacter baekdonensis B30]
gi|407199790|gb|EKE69805.1| translocation protein TolB [Celeribacter baekdonensis B30]
Length = 452
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P + +++ R ++ F+ + P ++VY+
Sbjct: 223 PRFSPTGDRVLYTSYETGRPQITMLDVGTVTRTRLPVPAEAVTFAPRFAPDGRSIVYS-- 280
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S + D+ +++ G S RLT PS SPDG IVF S R+G +
Sbjct: 281 ----MSTGTNTDLYRMDI--ASGQST--RLTNTPAIETAPSFSPDGSQIVFESDRSGTQQ 332
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF + G F + ++ +G+
Sbjct: 333 LYIMPAGGGEA---RRISNGKGRYGTPIWSPRGDLIAFTKQNE----GRFHIGVMRTDGS 385
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSD---YGGISAEPISTPHQYQPYGEIFKIKL 653
R L S P ++P+G+ I+FT + GG SA ++ + +
Sbjct: 386 EERLLTAS---FLDEGPSWAPNGRVIMFTRESQGAGGASA--------------LYSVDI 428
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G +LKR+ N+ PAW P
Sbjct: 429 SGRNLKRVPTNAGAS-DPAWSP 449
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 39/193 (20%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + ++ LT + P SP G +++ S TG + ++D G
Sbjct: 200 LAVMDYDG-AGLQYLTDDSYIVFAPRFSPTGDRVLYTSYETGRPQITMLDV------GTV 252
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL-IQSGSAGRA 610
T P ++P R P S + T L ++ I SG + R
Sbjct: 253 TRTRLPVPAEAVTFAP----------RFAPDGRSIVYSMSTGTNTDLYRMDIASGQSTRL 302
Query: 611 NH-------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
+ P FSPDG IVF SD G +++ + G + +R++
Sbjct: 303 TNTPAIETAPSFSPDGSQIVFESDRSGTQ--------------QLYIMPAGGGEARRISN 348
Query: 664 NSFEDGTPAWGPR 676
GTP W PR
Sbjct: 349 GKGRYGTPIWSPR 361
>gi|402848941|ref|ZP_10897187.1| tolB protein precursor protein [Rhodovulum sp. PH10]
gi|402500817|gb|EJW12483.1| tolB protein precursor protein [Rhodovulum sp. PH10]
Length = 444
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 43/259 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++N + R V + FS + P + V+ +
Sbjct: 219 PRFSPTTQEITYMSFGQSEPSVYLLNVETGQREIVGNFPGMTFSPRFSPDGQRVIMS--- 275
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + ++ +++ A RLT + P SPDG I F S R G + +
Sbjct: 276 ---LQQGANSNLFVMDLRS----KATTRLTDTPAIDTAPCFSPDGSRICFESDRGGSQQV 328
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G F + +I P+G+G
Sbjct: 329 YVMGAGGGNA---RRISFGQGSYSTPVWSPRGDFIAFTKQE----QGKFGIGIIKPDGSG 381
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P F+P+G+ ++F D G A ++ I + G
Sbjct: 382 ERLLTE----GYHNEGPTFAPNGRVLMFFRDLGAGPA--------------LYTIDVTGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ F PAW P
Sbjct: 424 NEQRVPTPGFAS-DPAWSP 441
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES E + + + D DG + VR LT P SP + I + S ++
Sbjct: 182 FVDESGPKERRVKRLALMDQDGAN-VRYLTRGDDLVLTPRFSPTTQEITYMSFGQSEPSV 240
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+++ E G+ + P +SPDG+ + S + S F M L T
Sbjct: 241 YLLNVETGQREIVGNF---PGMTFSPRFSPDGQRV-IMSLQQGANSNLFVMDLRSKATTR 296
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L +A P FSPDG I F SD GG +++ + G +
Sbjct: 297 LTDTPAIDTA-----PCFSPDGSRICFESDRGGSQ--------------QVYVMGAGGGN 337
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 338 ARRISFGQGSYSTPVWSPR 356
>gi|365901242|ref|ZP_09439093.1| Protein tolB precursor [Bradyrhizobium sp. STM 3843]
gi|365418009|emb|CCE11635.1| Protein tolB precursor [Bradyrhizobium sp. STM 3843]
Length = 459
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 43/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 232 PRFSPSSQEITYMEFGQGDPKVYLFNIENGQREIVGNFPGMSFSPRFSPDGQRIIMS--- 288
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + P SPDG + F S R G +
Sbjct: 289 ---LQQGGNSNLFVMDLRS----RTTTRLTDTPAIDTSPCYSPDGSQLCFESDRGGKPQI 341
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG+ R++ G + + WSP G++IAF G G F + +I P+G+G
Sbjct: 342 YVMPAGGGQA---QRISFGDGTYSTPVWSPRGDYIAFTKQ----GGGQFSIGVIKPDGSG 394
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG- 655
R L +AG N P F+P+G+ ++F D GG +A P ++ I + G
Sbjct: 395 ERIL----TAGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLYSIDISGR 438
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++LK T D PAW P
Sbjct: 439 NELKVPTPGYASD--PAWSP 456
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 88/239 (36%), Gaps = 65/239 (27%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 195 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSSQEITYMEFGQGDPKV 253
Query: 538 YIMDAEGGE--------GYGLH---------------------------------RLTEG 556
Y+ + E G+ G RLT+
Sbjct: 254 YLFNIENGQREIVGNFPGMSFSPRFSPDGQRIIMSLQQGGNSNLFVMDLRSRTTTRLTDT 313
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
P DT +SPDG + F SDR G ++Y++ P G G + I G G + P +S
Sbjct: 314 PAIDTSPCYSPDGSQLCFESDR----GGKPQIYVM-PAGGGQAQRISFGD-GTYSTPVWS 367
Query: 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P G I FT GG Q+ I IK DGS +R+ F + P + P
Sbjct: 368 PRGDYIAFTKQGGG----------QF----SIGVIKPDGSG-ERILTAGFHNEGPTFAP 411
>gi|297539676|ref|YP_003675445.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylotenera versatilis 301]
gi|297259023|gb|ADI30868.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera
versatilis 301]
Length = 439
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 55/287 (19%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
DG N L + + K P+ IS P++SP+G++IA+V F P +YV G
Sbjct: 197 DGANPLTMVSSKEPI--IS--------PAWSPEGNKIAYVSFEKKKPIIYVQTLSGQRTV 246
Query: 453 QVYFK-NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
FK N + W P + A+V T G + + +IN D S + R+T
Sbjct: 247 LAGFKGNNSAPAWSPDGSKLAIVLTYG--------ANSQVYTINADG----SGLSRITKG 294
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPD 568
+ P+ S D KWI F S R G +Y + A GG+ R+T EG + + +SPD
Sbjct: 295 NAIDTEPTWSSDAKWIYFTSDRGGKPQIYKVSANGGDP---QRVTFEGAY-NVSPRFSPD 350
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ +A + G F + L TG +L+ GS + P F+P+G+ I++ +
Sbjct: 351 GKSLAMIRND----GGKFRVAL-QDLTTGQVQLLSEGS--QDESPSFAPNGRVILYATRS 403
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +G + + DG +RL ++ + PAWGP
Sbjct: 404 SG--------------HGALAAVSADGRVKQRLNESGGDIREPAWGP 436
>gi|410943001|ref|ZP_11374742.1| translocation protein TolB [Gluconobacter frateurii NBRC 101659]
Length = 454
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 21/205 (10%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P F+P D++AF+ + P VY+ + GS R+Q+ + +D + A ++ G
Sbjct: 221 PRFNPARDQVAFMSYANNRPRVYLFDL-GSGRQQMLGE------FDGISFAPRFSPDGSR 273
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
++ I V D+ S + ++ G + P SPDG IVF S R G LYI
Sbjct: 274 VVLSATRGGGSDIFVVDLGSRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDRGGSPQLYI 333
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M A GG G R++ G WSP G+ IAF G G F + +++P+GTG R
Sbjct: 334 MGASGG---GARRISYGSGQYGSPVWSPRGDLIAFT----RIGHGGFSLGVMNPDGTGER 386
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
L Q + P F P+G+ + F
Sbjct: 387 ILTQGFT---VESPTFCPNGRVLAF 408
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I + + D DG ++ R LT P +P + F S +Y+ D G
Sbjct: 195 ITRLALMDQDGFNS-RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSGR-- 251
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
L E +SPDG + ++ R G GS +++++ ++ SG A
Sbjct: 252 -QQMLGEFDGISFAPRFSPDGSRVVLSATR---GGGS-DIFVVDLGSRSKHQITSSGGA- 305
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P FSPDG IVF SD GG +P +++ + G +R++ S +
Sbjct: 306 IDTSPCFSPDGSQIVFNSDRGG-------SP-------QLYIMGASGGGARRISYGSGQY 351
Query: 669 GTPAWGPR 676
G+P W PR
Sbjct: 352 GSPVWSPR 359
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 33/214 (15%)
Query: 323 FTPATSPGNNK--FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
TP +P ++ F++ A RP + LFDL + L F P SPD
Sbjct: 219 LTPRFNPARDQVAFMSYANNRP-----RVYLFDLGSGRQQMLGEF---DGISFAPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLE-NIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-- 437
SRV RGG G++ +++ +S S + P FSP G +I F
Sbjct: 271 GSRVVLSATRGG-----GSDIFVVDLGSRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDR 325
Query: 438 --FPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493
P +Y++ + G R++ + + S VW P + + +T G S+
Sbjct: 326 GGSPQLYIMGASGGGARRISYGSGQYGSPVWSPRGDLIAFTRIGHGG---------FSLG 376
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
V + DG R+ T G P+ P+G+ + F
Sbjct: 377 VMNPDGTG--ERILTQGFTVESPTFCPNGRVLAF 408
>gi|222054198|ref|YP_002536560.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter daltonii FRC-32]
gi|221563487|gb|ACM19459.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
daltonii FRC-32]
Length = 425
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 42/275 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
L+ + ++QR+T G P SP + I + +R EL +
Sbjct: 180 LMDYDGYNVQRLTKNGSINLNPDFSPSGKELIYTSYKRRNPDLYRRELLTGAE------A 233
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFR 418
R S ++ SPD +R+ + G++ +DG + L K+ D+S
Sbjct: 234 RISSHPGINVTGAWSPDGTRIALAMSKDGNSEIYTISKDGKQVVRL--TKNEAIDVS--- 288
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVV 472
P++SP G RIAFV P ++V+N+DGS+ ++ + S W P +
Sbjct: 289 -----PAWSPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTSGTYNVSPRWSPKGNTIA 343
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
Y F I+V +VDG + ++ LT++G +N P SPDG++IVF S+R
Sbjct: 344 YCRQEGGF----------QIHVINVDGSNDIK-LTSDG-SNEHPRWSPDGRFIVFSSSRA 391
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
G + +Y+M +G G R++ G +D+ WSP
Sbjct: 392 GKEGIYVMR---NDGTGQVRVSRGSSADSHPTWSP 423
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 59/215 (27%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A R++++ N + SPDG I ++ G +Y + +G + + RLT+ D
Sbjct: 231 AEARISSHPGINVTGAWSPDGTRIALAMSKDGNSEIYTISKDGKQ---VVRLTKNEAIDV 287
Query: 562 MCNWSPDGEWIAFASDR---------DNPGS----------------------------- 583
WSPDG IAF SDR + GS
Sbjct: 288 SPAWSPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTSGTYNVSPRWSPKGNTIAYCRQ 347
Query: 584 -GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
G F++++I+ +G+ KL GS HP +SPDG+ IVF+S G
Sbjct: 348 EGGFQIHVINVDGSNDIKLTSDGS---NEHPRWSPDGRFIVFSSSRAGKEG--------- 395
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
I+ ++ DG+ R+++ S D P W PR+
Sbjct: 396 -----IYVMRNDGTGQVRVSRGSSADSHPTWSPRW 425
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 37/157 (23%)
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGSG 584
F ST +G K +Y+MD +G Y + RLT+ + ++SP G+ + + S R NP
Sbjct: 167 AFVSTASGNKEIYLMDYDG---YNVQRLTKNGSINLNPDFSPSGKELIYTSYKRRNP--- 220
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHP------YFSPDGKSIVFTSDYGGISAEPIST 638
++Y R+L+ A ++HP +SPDG I G S
Sbjct: 221 --DLY--------RRELLTGAEARISSHPGINVTGAWSPDGTRIALAMSKDGNS------ 264
Query: 639 PHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
EI+ I DG + RLT+N D +PAW P
Sbjct: 265 --------EIYTISKDGKQVVRLTKNEAIDVSPAWSP 293
>gi|152980804|ref|YP_001354157.1| periplasmic component of the Tol biopolymer transport system
[Janthinobacterium sp. Marseille]
gi|151280881|gb|ABR89291.1| periplasmic component of the Tol biopolymer transport system
[Janthinobacterium sp. Marseille]
Length = 423
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 36/256 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
PS+SP G ++A+V F P VY+ D +R++ N + A + G
Sbjct: 197 PSWSPDGTKVAYVSFENKKPVVYI--QDLVSRKRTVAAN-----FKGSNSAPSWAPDGNR 249
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A S + + V + DG + +RRL+++ + P S DG+ I F S R+G +Y
Sbjct: 250 LAVALSRDGLTQVYVVNADG-TGLRRLSSSNGIDTEPQFSADGQSIFFTSDRSGGPQIYK 308
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M A GGE R+T + SPDG+++A+ S R+ G F+++L+ +
Sbjct: 309 MGANGGEA---RRVTFSGSYNISPRISPDGKYLAYISRRE----GKFQLFLLDLTNGQEQ 361
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
+L + P FSP+GK +++ ++ G G + + +DG +
Sbjct: 362 RL---SDTVKDESPSFSPNGKYLMYATESG--------------RRGTLAVVSVDGQVKQ 404
Query: 660 RLTQNSFEDGTPAWGP 675
RLT + + P WGP
Sbjct: 405 RLTTQAGDIREPTWGP 420
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 39/255 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGD 431
++P SPD ++V Y E+ + ++++ S ++ F+ S PS++P G+
Sbjct: 195 ISPSWSPDGTKVAYVSF------ENKKPVVYIQDLVSRKRTVAANFKGSNSAPSWAPDGN 248
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A VYVVN+DG+ R++ N T + +++ +TS GGP+
Sbjct: 249 RLAVALSRDGLTQVYVVNADGTGLRRLSSSNGIDTEPQFSADGQSIFFTSDRSGGPQIYK 308
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ +G A RR+T +G N P +SPDGK++ + S R G L+++D
Sbjct: 309 MGA------------NGGEA-RRVTFSGSYNISPRISPDGKYLAYISRREGKFQLFLLDL 355
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ RL++ D ++SP+G+++ +A++ G+ + ++ +G ++L
Sbjct: 356 TNGQE---QRLSD-TVKDESPSFSPNGKYLMYATESGRRGT----LAVVSVDGQVKQRL- 406
Query: 603 QSGSAGRANHPYFSP 617
+ AG P + P
Sbjct: 407 -TTQAGDIREPTWGP 420
>gi|383458213|ref|YP_005372202.1| TolB protein [Corallococcus coralloides DSM 2259]
gi|380734508|gb|AFE10510.1| TolB protein [Corallococcus coralloides DSM 2259]
Length = 429
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 29/178 (16%)
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD R+ Y G S + DG+ + + L + P++SP G R
Sbjct: 245 SPDGKRIAYALAEGESAQIYVASADGSGAKAITDTPYGL---------NTSPTWSPDGKR 295
Query: 433 IAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSE 486
IAFV P VYV+N+DGS +++ F+ ++ W P + + +T+ E +
Sbjct: 296 IAFVSNRGGSPQVYVMNADGSGVKRLTFQGNYNQTPDWSPRGDLIAFTA-----RDERNA 350
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
D+ ++NVD V RLT + NN P+ SP+G+ I+F + R G +L++M +EG
Sbjct: 351 FDLFTVNVD----TGKVTRLTQDQGNNEEPTFSPNGRLIIFSTNRNGGAHLWVMTSEG 404
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ SP G ++AF + P +YV S G + + + +T V Y+ G
Sbjct: 199 LPTLSPSG-QVAFTSYRKNRPDIYV-QSPGGEAKPLVTEGQMAT-------GVAYSPDGK 249
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A +E + I V DG A T N P+ SPDGK I F S R G +Y
Sbjct: 250 RIAYALAEGESAQIYVASADGSGAKAITDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVY 309
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
+M+A+G G+ RLT +G ++ T +WSP G+ IAF A D N +F+++ ++ +
Sbjct: 310 VMNADGS---GVKRLTFQGNYNQT-PDWSPRGDLIAFTARDERN----AFDLFTVNVDTG 361
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ +L Q G P FSP+G+ I+F+++ G
Sbjct: 362 KVTRLTQ--DQGNNEEPTFSPNGRLIIFSTNRNG 393
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 26/185 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG++A + T G + P++SP G+ + F S R ++Y+ + GGE L
Sbjct: 178 VYVADWDGMNA--QALTKGGTHILPTLSPSGQ-VAFTSYRKNRPDIYVQ-SPGGEAKPL- 232
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+TEG + T +SPDG+ IA+A S ++Y+ +G+G K I G
Sbjct: 233 -VTEGQMA-TGVAYSPDGKRIAYALAEGE----SAQIYVASADGSGA-KAITDTPYGLNT 285
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK I F S+ GG +P +++ + DGS +KRLT + TP
Sbjct: 286 SPTWSPDGKRIAFVSNRGG-------SP-------QVYVMNADGSGVKRLTFQGNYNQTP 331
Query: 672 AWGPR 676
W PR
Sbjct: 332 DWSPR 336
>gi|209965095|ref|YP_002298010.1| translocation protein TolB [Rhodospirillum centenum SW]
gi|209958561|gb|ACI99197.1| protein TolB precursor [Rhodospirillum centenum SW]
Length = 451
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 122/259 (47%), Gaps = 36/259 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N D + R+++ + F+ + P V+ +
Sbjct: 219 PRFSPTAQEITYLSYFNNKPRVYLFNID-TGRQELLGDFPGMTFAPRFSPDGNQVIMS-- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++S DI ++++ RLT + + PS SPDGK IVF S R G +
Sbjct: 276 ----LAQSGNTDIYTLDLR----TRRQTRLTDHPGIDTAPSYSPDGKQIVFESDRGGTQQ 327
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY M+A+G + R+T G WSP G+ IAF R N G F + +I P+GT
Sbjct: 328 LYTMNADGSN---VKRITFGQGRYATPVWSPRGDLIAFT--RLN--GGRFYIGVIRPDGT 380
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L + A P ++P+G+ +++ + +P+ + Q +F I L G
Sbjct: 381 GERLLTE---AFHVEGPTWAPNGRVLMYFKE------KPVGAGAR-QRQSRLFTIDLTGV 430
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ + + PAW P
Sbjct: 431 NERQMV-TATDASDPAWSP 448
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 503 VRRLTT---NGKNNAF----------PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
V+RL +G+NN F P SP + I + S +Y+ + + G
Sbjct: 193 VKRLAIMDQDGENNRFLTDGRVLVLTPRFSPTAQEITYLSYFNNKPRVYLFNIDTGRQ-- 250
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
L + P +SPDG + + + SG+ ++Y + +L + G
Sbjct: 251 -ELLGDFPGMTFAPRFSPDGNQVIMSLAQ----SGNTDIYTLDLRTRRQTRL--TDHPGI 303
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P +SPDGK IVF SD GG +++ + DGS++KR+T
Sbjct: 304 DTAPSYSPDGKQIVFESDRGGTQ--------------QLYTMNADGSNVKRITFGQGRYA 349
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 350 TPVWSPR 356
>gi|118588325|ref|ZP_01545734.1| translocation protein TolB precursor [Stappia aggregata IAM 12614]
gi|118439031|gb|EAV45663.1| translocation protein TolB precursor [Stappia aggregata IAM 12614]
Length = 189
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 24/172 (13%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + + PS SPDG IVF S R G + LY+M A GG G R++ GP +
Sbjct: 38 RLTNDAAIDTSPSFSPDGSQIVFESDRGGTQQLYVMSAGGG---GAQRISFGPGRYSTPV 94
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIV 623
WSP G+ IAF G F + ++ P+G G R L + G N P +SP+G+ +V
Sbjct: 95 WSPRGDLIAFTKQH----QGRFMIGVMRPDGKGERILTE----GYHNEGPAWSPNGRVLV 146
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F D G + P +++ + L G + +R+ +F P+W P
Sbjct: 147 FFRDTPGANGGP-----------QVWTVDLTGYNEQRVETPAFAS-DPSWSP 186
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG+ +V + G N++ MD + RLT DT ++SPDG I F
Sbjct: 5 PRFSPDGQSVVMSLQQGGNANIFKMDLRSRQ---TTRLTNDAAIDTSPSFSPDGSQIVFE 61
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
SDR G+ ++Y++ G G +++ S GR + P +SP G I FT
Sbjct: 62 SDR----GGTQQLYVMSAGGGGAQRI--SFGPGRYSTPVWSPRGDLIAFT---------- 105
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+Q I ++ DG + LT+ +G PAW P
Sbjct: 106 ----KQHQGRFMIGVMRPDGKGERILTEGYHNEG-PAWSP 140
>gi|357385484|ref|YP_004900208.1| TolB protein [Pelagibacterium halotolerans B2]
gi|351594121|gb|AEQ52458.1| TolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Pelagibacterium halotolerans B2]
Length = 438
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P SP G +A++ G+++VN + + + + +F+ + P +V++
Sbjct: 210 PRMSPDGQSVAYMVLDGSTSSGIFIVNMASGQSQSIGRFGQMSFAPRFSPDGRRLVFSV- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + +I D+ G ++LTT + PS SPDG+ + F S R G
Sbjct: 269 --------TNGAVTNIYAMDLAG-GQPQQLTTGSAIDTSPSYSPDGQRLTFESDRGGRPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M A GG G R++ G S + WSP G+ IAF G F + ++ P+G+
Sbjct: 320 IYVMSAAGG---GAERISYGDGSYSTPVWSPKGDLIAFTRQS----GGQFSIGIMGPDGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L S A P ++P+G+ +++ D GG +++ I + G
Sbjct: 373 GERILATS---YHAEGPTWAPNGRVLMYFRDPGGNDGA------------QLYSIDIWGR 417
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ F PAWGP
Sbjct: 418 NERRIPTEGFAS-DPAWGP 435
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR----STRTGYKNLYIMDAEGGEG 547
+ + D DG + +R L+ + P +SPDG+ + + ST +G ++I++ G+
Sbjct: 187 LAIMDQDGAN-IRYLSDGAQQILTPRMSPDGQSVAYMVLDGSTSSG---IFIVNMASGQS 242
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ R + ++ +SPDG + F+ +Y + G G + + +GSA
Sbjct: 243 QSIGRFGQMSFA---PRFSPDGRRLVFSVTN----GAVTNIYAMDLAG-GQPQQLTTGSA 294
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P +SPDG+ + F SD GG +P +I+ + G +R++
Sbjct: 295 -IDTSPSYSPDGQRLTFESDRGG------------RP--QIYVMSAAGGGAERISYGDGS 339
Query: 668 DGTPAWGPR 676
TP W P+
Sbjct: 340 YSTPVWSPK 348
>gi|347754745|ref|YP_004862309.1| periplasmic component of the Tol biopolymer transport system
[Candidatus Chloracidobacterium thermophilum B]
gi|347587263|gb|AEP11793.1| Periplasmic component of the Tol biopolymer transport system
[Candidatus Chloracidobacterium thermophilum B]
Length = 355
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 53/292 (18%)
Query: 415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREA--VV 472
+ F FDG F D A + +YV+++ G+ +R V +T +R+ ++
Sbjct: 58 AYFSFDGKQLVFQSTRDGRACDQ---IYVMDATGARQRMVSTGLGRTTCAYFLRDGRHII 114
Query: 473 YTSGG---------PEFA-----SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
Y+S P+F+ + DI ++D + RLT +A +V
Sbjct: 115 YSSTHLAQRECPPRPDFSRGYVWALYPGYDIFKASLDG----KRLVRLTDAPGYDAEATV 170
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
SPDGK IVF S R+G LYIMD +G L +LT P D +S DG+ I + + R
Sbjct: 171 SPDGKHIVFTSDRSGDLELYIMDTDGKN---LRQLTHTPGYDGGAFFSHDGKQIVWRASR 227
Query: 579 DNPGS---------------GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
++Y+++ +G+ +R+L +G A A P+F+PD + ++
Sbjct: 228 PEGAELEEYRALLREHLIRPSRLDIYVMNVDGSNVRRLTNNGKANFA--PFFTPDDRKVI 285
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F+S+ E++ + LDG+ L+R+T DG P + P
Sbjct: 286 FSSNMDDPQGRNF----------ELYLVNLDGTGLERVTYEETFDGFPMFSP 327
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 425 SFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV-----YFKNAF------STVWDPVR- 468
+ SP G I F +Y++++DG N RQ+ Y AF VW R
Sbjct: 169 TVSPDGKHIVFTSDRSGDLELYIMDTDGKNLRQLTHTPGYDGGAFFSHDGKQIVWRASRP 228
Query: 469 ---EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
E Y + E S +DI +NVD S VRRLT NGK N P +PD + +
Sbjct: 229 EGAELEEYRALLREHLIRPSRLDIYVMNVDG----SNVRRLTNNGKANFAPFFTPDDRKV 284
Query: 526 VFRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
+F S + LY+++ +G GL R+T D +SPDG+ + FAS+R+
Sbjct: 285 IFSSNMDDPQGRNFELYLVNLDGT---GLERVTYEETFDGFPMFSPDGKKLVFASNRNGR 341
Query: 582 GSGSFEMYL 590
G +++
Sbjct: 342 ARGETNIFI 350
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 25/160 (15%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------TGYK-------- 535
+ + + D DG + +R+LT + S DGK IV+R++R Y+
Sbjct: 187 LELYIMDTDGKN-LRQLTHTPGYDGGAFFSHDGKQIVWRASRPEGAELEEYRALLREHLI 245
Query: 536 -----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
++Y+M+ +G + RLT ++ ++PD + F+S+ D+P +FE+YL
Sbjct: 246 RPSRLDIYVMNVDGSN---VRRLTNNGKANFAPFFTPDDRKVIFSSNMDDPQGRNFELYL 302
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++ +GTGL ++ + P FSPDGK +VF S+ G
Sbjct: 303 VNLDGTGLERVTYEETFD--GFPMFSPDGKKLVFASNRNG 340
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 36/187 (19%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGP 557
++ +R+LT G+N A S DGK +VF+STR G +Y+MDA G R+
Sbjct: 43 LANLRQLTFGGEN-AEAYFSFDGKQLVFQSTRDGRACDQIYVMDATGAR----QRMVSTG 97
Query: 558 WSDTMCNW-SPDGEWIAFAS----DRDNPGSGSFE---MYLIHP-------NGTGLRKLI 602
T C + DG I ++S R+ P F ++ ++P + G R +
Sbjct: 98 LGRTTCAYFLRDGRHIIYSSTHLAQRECPPRPDFSRGYVWALYPGYDIFKASLDGKRLVR 157
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ + G SPDGK IVFTSD G E++ + DG +L++LT
Sbjct: 158 LTDAPGYDAEATVSPDGKHIVFTSDRSGDL--------------ELYIMDTDGKNLRQLT 203
Query: 663 QNSFEDG 669
DG
Sbjct: 204 HTPGYDG 210
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 48/258 (18%)
Query: 173 ILSGEYLIYVSTH----ENPGTPRTS----WAA-----VYSTELKTGLTRRLTPYGVADF 219
+ G ++IY STH E P P S WA ++ L RLT D
Sbjct: 107 LRDGRHIIYSSTHLAQRECPPRPDFSRGYVWALYPGYDIFKASLDGKRLVRLTDAPGYDA 166
Query: 220 SPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDEST 279
VSP GK+ S ++ D E+ ++ TD G ++ G+ +
Sbjct: 167 EATVSPDGKHIVFTS--DRSGDLELYIMDTD--------GKNLRQLTHTPGY-----DGG 211
Query: 280 LFFHRKSEEDDW---------ISVYKVILPQ---------TGLVSTESVSIQRVTPPGLH 321
FF ++ W + Y+ +L + +++ + +++R+T G
Sbjct: 212 AFFSHDGKQIVWRASRPEGAELEEYRALLREHLIRPSRLDIYVMNVDGSNVRRLTNNGKA 271
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
F P +P + K I ++ R+ EL+ LV L R +T P SPD
Sbjct: 272 NFAPFFTPDDRKVI-FSSNMDDPQGRNFELY-LVNLDGTGLERVTYEETFDGFPMFSPDG 329
Query: 382 SRVGYHKCRGGSTREDGN 399
++ + R G R + N
Sbjct: 330 KKLVFASNRNGRARGETN 347
>gi|298292994|ref|YP_003694933.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Starkeya novella DSM 506]
gi|296929505|gb|ADH90314.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella
DSM 506]
Length = 452
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV-YFKN-AFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++N + R V F N +FS + P + V+ +
Sbjct: 225 PRFSPTSQEITYMSYGRGEPRVYLLNIENGQREVVGNFPNMSFSPRFAPDGQRVILS--- 281
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +I +++ A RLT + P SPDG I F S R G +
Sbjct: 282 ---LQQGADSNIFVMDLRS----KATTRLTDTPAIDTAPCYSPDGSQICFESDRGGGSQI 334
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+ +G HR++ G + WSP G+ IAF G F + L+ P+G G
Sbjct: 335 YVMNPDGSN---QHRISFGEGRYSTPVWSPRGDVIAFTKQ----AQGRFAIGLMRPDGQG 387
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P F+P+G+ I+F D GG +++ + + G
Sbjct: 388 ERILTE----GYHNEGPTFAPNGRVIMFFRDLGGNGGP------------QLYTVDVTGY 431
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ S+ PAW P
Sbjct: 432 NEQRVPTPSYAS-DPAWSP 449
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES E + + + D DG + V LT P SP + I + S G +
Sbjct: 188 FVDESGPKEKRVKRLAIMDQDGAN-VTYLTRGDDLVLTPRFSPTSQEITYMSYGRGEPRV 246
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+++ E G+ + +S ++PDG+ + S + S F M L T
Sbjct: 247 YLLNIENGQREVVGNFPNMSFS---PRFAPDGQRVIL-SLQQGADSNIFVMDLRSKATTR 302
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L +A P +SPDG I F SD GG S +I+ + DGS+
Sbjct: 303 LTDTPAIDTA-----PCYSPDGSQICFESDRGGGS--------------QIYVMNPDGSN 343
Query: 658 LKRLTQNSFEDGTPAWGPR 676
R++ TP W PR
Sbjct: 344 QHRISFGEGRYSTPVWSPR 362
>gi|440749758|ref|ZP_20929004.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
gi|436482044|gb|ELP38190.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
Length = 761
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
+ +L+ + N+ F +S DGK +VFRS R+GY ++Y+ + LT+ D
Sbjct: 588 IEKLSDSPYNDGFGDISEDGK-MVFRSGRSGYFDIYLKTNDE-----TINLTQDSHRDNF 641
Query: 563 CNWSPDGEWIAFASDR--DNPGSGSFEMYL--IHPNGTGLRKLIQSGSAGRANHPYFSPD 618
S G+ I F+SDR + +++L + P+GT I S +G+ H +FSPD
Sbjct: 642 PAISKQGDKIVFSSDRLRTEQEYKTMDIFLMSLKPDGTWTEPEIISIGSGQNAHAHFSPD 701
Query: 619 GKSIVFTSDYGGISAE-PISTPHQYQP--YGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
G+ +++T++ GI+ E + P + P YGEI + + RLT N +E+GTP W
Sbjct: 702 GEWVIYTTEGYGINDEQALIQPIIFSPQMYGEIVAYNVQTKERIRLTHNKWEEGTPLW 759
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
+SPDGKW+VF S R+G LY+ +G Y L + +SPDG +AF +
Sbjct: 64 ISPDGKWVVFTSERSGIPQLYVQAIDG--NYPPSLLIKSKSFQDQATFSPDGSQLAFVAS 121
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR--ANH------PYFSPDGKSIVFTSDYG 629
+ G+ E+YLI L IQ + NH P FSPDG+ I F+SD
Sbjct: 122 HE----GNSEIYLI----PFLPDSIQDIQIAKNLTNHPSGDFRPAFSPDGQRIAFSSDRD 173
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
P Q G+I+ + + G + RLT + F DG+P W
Sbjct: 174 HEIVPHPQFPFARQRIGDIYSVDISGENPTRLTNSEFWDGSPRW 217
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 427 SPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA- 481
SP G + F P +YV DG+ + K+ ++ ++ G + A
Sbjct: 65 SPDGKWVVFTSERSGIPQLYVQAIDGNYPPSLLIKSK------SFQDQATFSPDGSQLAF 118
Query: 482 ----SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS-------- 529
+SE+ +I D + + + LT + + P+ SPDG+ I F S
Sbjct: 119 VASHEGNSEIYLIPFLPDSIQDIQIAKNLTNHPSGDFRPAFSPDGQRIAFSSDRDHEIVP 178
Query: 530 ------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
R ++Y +D G RLT + D WS DG I F S R+ S
Sbjct: 179 HPQFPFARQRIGDIYSVDISGENP---TRLTNSEFWDGSPRWSADGAKIIFYSGRNGQNS 235
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
FEM +G+ ++I+ +G A P + PDG +IVFT+
Sbjct: 236 -IFEM---DADGSNQHQIIE--FSGPAVSPDYLPDG-TIVFTT 271
>gi|340777305|ref|ZP_08697248.1| translocation protein TolB [Acetobacter aceti NBRC 14818]
Length = 456
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 39/237 (16%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N +L + ++ LP +FSP D+IAF+ + P +YV + ++
Sbjct: 213 QDGANCRILSSTQTKLP------------AFSPVRDQIAFLSYASTVPRIYVFDLASGHQ 260
Query: 452 RQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
R + N + P +++ ++ S D+ S+N+ A R++T++
Sbjct: 261 RIIGDFNGVPLGPHYSPDGNSLIVP------VAKGSGSDLYSVNIAS----GAKRQITSS 310
Query: 510 GKN-NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
G N PS SPDG IVF S + G LYIM A GG L G + D++ WSP
Sbjct: 311 GGAINVSPSFSPDGSQIVFNSDKGGSPALYIMSASGGAARRLS-FGSGNYGDSV--WSPR 367
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
G+ I F G F + +++P+GTG R + Q + P F P+G+ + F+
Sbjct: 368 GDLIGFTRIS----GGQFSLGIMNPDGTGERIMTQGYT---VESPSFCPNGRVLAFS 417
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 29/189 (15%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + V D DG + +T K P+ SP I F S + +Y+ D G
Sbjct: 206 MRLAVMDQDGANCRILSSTQTK---LPAFSPVRDQIAFLSYASTVPRIYVFDLASG---- 258
Query: 550 LHRLTEGPWSDTMC--NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
H+ G ++ ++SPDG + + GSGS ++Y ++ R++ SG A
Sbjct: 259 -HQRIIGDFNGVPLGPHYSPDGNSLIVPVAK---GSGS-DLYSVNIASGAKRQITSSGGA 313
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+ P FSPDG IVF SD GG A ++ + G +RL+ S
Sbjct: 314 INVS-PSFSPDGSQIVFNSDKGGSPA--------------LYIMSASGGAARRLSFGSGN 358
Query: 668 DGTPAWGPR 676
G W PR
Sbjct: 359 YGDSVWSPR 367
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 33/144 (22%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT--S 475
PSFSP G +I F P +Y++++ G R++ F N +VW P + + +T S
Sbjct: 318 PSFSPDGSQIVFNSDKGGSPALYIMSASGGAARRLSFGSGNYGDSVWSPRGDLIGFTRIS 377
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR---- 531
GG +F S+ + + DG R+ T G PS P+G+ + F +
Sbjct: 378 GG-QF----------SLGIMNPDGTG--ERIMTQGYTVESPSFCPNGRVLAFSRSGASGG 424
Query: 532 --------TGYKNLYIMDAEGGEG 547
TG+ L I EGG G
Sbjct: 425 AAIHTIDITGFHELAIPTPEGGSG 448
>gi|84516652|ref|ZP_01004011.1| translocation protein TolB precursor [Loktanella vestfoldensis
SKA53]
gi|84509688|gb|EAQ06146.1| translocation protein TolB precursor [Loktanella vestfoldensis
SKA53]
Length = 438
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
P FSP+GD++ + F P + +++ RRQ+ + +FS + V+Y+
Sbjct: 209 PRFSPRGDQVLYTSFESGFPRINLLDVADVARRQIATAPGEMSFSPRFSRDGRQVIYS-- 266
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S + DI ++D V RLT + PS+SPDG IVF S R+G +
Sbjct: 267 ----LSNGATTDIYRTDLDTGQHV----RLTATPSIDTAPSLSPDGSQIVFESDRSGSQQ 318
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM + GG+ R++ G + WSP G+ +AF +G F + ++ +G+
Sbjct: 319 LYIMSSTGGDA---RRISFGEGRYSTPVWSPRGDLVAFTKQN----AGRFHIGVMRTDGS 371
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P +SP+G+ I+FT + G ++ + + G
Sbjct: 372 EERLLT---SSFLDEAPTWSPNGRVIMFTRETQGADGA-----------SALYSVDISGR 417
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + Q++ D + WGP
Sbjct: 418 NLRAVPIQSAASDAS--WGP 435
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 299 LPQTGLVSTESVSIQRV-TPPGLHAFTPATSPGNNKFI-AVATRRPTSSYRHIELFDLVK 356
P+ L+ V+ +++ T PG +F+P S + I +++ T YR DL
Sbjct: 227 FPRINLLDVADVARRQIATAPGEMSFSPRFSRDGRQVIYSLSNGATTDIYRT----DLDT 282
Query: 357 NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDIS 415
+ + LT S T P +SPD S++ + R GS QL ++ + IS
Sbjct: 283 GQHVRLTATPSIDTA---PSLSPDGSQIVFESDRSGS------QQLYIMSSTGGDARRIS 333
Query: 416 LFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF---STVWDPVR 468
S P +SP+GD +AF + + V+ +DGS R ++F + W P
Sbjct: 334 FGEGRYSTPVWSPRGDLVAFTKQNAGRFHIGVMRTDGSEER--LLTSSFLDEAPTWSPNG 391
Query: 469 EAVVYT--SGGPEFASESSEVDIISINVDDV 497
+++T + G + AS VDI N+ V
Sbjct: 392 RVIMFTRETQGADGASALYSVDISGRNLRAV 422
>gi|156744050|ref|YP_001434179.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941]
gi|156235378|gb|ABU60161.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM
13941]
Length = 572
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 85/169 (50%), Gaps = 25/169 (14%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTS-- 475
PS+SP + + F G +YV+ +DGS+ R++ A+ W P V +TS
Sbjct: 74 PSWSPDANHVVFASRRGDNWDLYVMRADGSDLRRLTNHPAYDGEPSWSPDGRRVAFTSMR 133
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G PE + +D+I + RR+TT+ +A P+ SPDG+ I F S R G
Sbjct: 134 DGNPEIYT----LDLIGGDA---------RRITTHPAADAQPTWSPDGRRIAFTSWRDGN 180
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
+ +YI DAE G + LT P D WSPDG IAF SDRD G+
Sbjct: 181 QEIYIADAESG---AVINLTNHPAPDHSPAWSPDGGRIAFISDRDGGGN 226
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 88/196 (44%), Gaps = 24/196 (12%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
FA+ + I D+ G A LT + + PS SPD +VF S R +LY+
Sbjct: 39 FAAARGDNGAFDIFSADLAGERAAN-LTADPYPDRSPSWSPDANHVVFASRRGDNWDLYV 97
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M A+G + L RLT P D +WSPDG +AF S RD G+ E+Y + G R
Sbjct: 98 MRADGSD---LRRLTNHPAYDGEPSWSPDGRRVAFTSMRD----GNPEIYTLDLIGGDAR 150
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
++ +A P +SPDG+ I FTS G EI+ + +
Sbjct: 151 RITTHPAAD--AQPTWSPDGRRIAFTSWRDGNQ--------------EIYIADAESGAVI 194
Query: 660 RLTQNSFEDGTPAWGP 675
LT + D +PAW P
Sbjct: 195 NLTNHPAPDHSPAWSP 210
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 26/162 (16%)
Query: 516 PSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P++ G+ I+F + R G +++ D G LT P+ D +WSPD +
Sbjct: 29 PALPGQGR-ILFAAARGDNGAFDIFSADLAGERA---ANLTADPYPDRSPSWSPDANHVV 84
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
FAS R + ++++Y++ +G+ LR+L + P +SPDG+ + FTS G
Sbjct: 85 FASRRGD----NWDLYVMRADGSDLRRL--TNHPAYDGEPSWSPDGRRVAFTSMRDGNP- 137
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
EI+ + L G D +R+T + D P W P
Sbjct: 138 -------------EIYTLDLIGGDARRITTHPAADAQPTWSP 166
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 107/260 (41%), Gaps = 42/260 (16%)
Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
PG + + A R ++ I DL + LT P +P SPD++ V +
Sbjct: 32 PGQGRILFAAARGDNGAF-DIFSADLAGERAANLTADPYPDR---SPSWSPDANHVVFAS 87
Query: 389 CRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----P 439
RG + R DG++ L N + +DG PS+SP G R+AF P
Sbjct: 88 RRGDNWDLYVMRADGSDLRRLTNHPA---------YDGE-PSWSPDGRRVAFTSMRDGNP 137
Query: 440 GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y ++ G + R++ A W P + +TS + + E+ I
Sbjct: 138 EIYTLDLIGGDARRITTHPAADAQPTWSPDGRRIAFTS----WRDGNQEIYIADAES--- 190
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
AV LT + + P+ SPDG I F S R G NL+I D GE L GP
Sbjct: 191 ---GAVINLTNHPAPDHSPAWSPDGGRIAFISDRDGGGNLHIRDLITGE-----ELRAGP 242
Query: 558 WSDTMCN--WSPDGEWIAFA 575
+ + + W+P G +A A
Sbjct: 243 DNLGLRDPAWTPGGGLMAVA 262
>gi|86748935|ref|YP_485431.1| translocation protein TolB [Rhodopseudomonas palustris HaA2]
gi|118574594|sp|Q2IZ40.1|TOLB_RHOP2 RecName: Full=Protein TolB; Flags: Precursor
gi|86571963|gb|ABD06520.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris HaA2]
Length = 449
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 222 PRFSPSTQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMSFAPRFSPDGQRIIMS--- 278
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPD I F S R G +
Sbjct: 279 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 332 YVMPASGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 384
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +A P +F + + G
Sbjct: 385 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLFTVDVSGR 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 429 NELRVPTPGYAS-DPAWSP 446
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES D + + + D DG + VR LT P SP + I + G +
Sbjct: 185 FIDESGPADRRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPKV 243
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 244 YLFNIETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLFVMDLRSKS 296
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPD I F SD GG +P +I+ + G
Sbjct: 297 TTRLTDTPAI--DTSPSYSPDAARICFESDRGG------------KP--QIYVMPASGGQ 340
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 341 AQRI---SFGDGSYSTPVWSPR 359
>gi|86157087|ref|YP_463872.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|119371034|sp|Q2INP9.1|TOLB_ANADE RecName: Full=Protein TolB; Flags: Precursor
gi|85773598|gb|ABC80435.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C]
Length = 434
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P + +T SE ++ + V DG S R+LT++
Sbjct: 239 PLGRQRNAFGGVYSPDGSRIAFTV---------SEGNVTDLWVMSADG-SGARKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVAPDSGAISRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G R G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRQRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G+G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGSGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>gi|86135211|ref|ZP_01053793.1| putative TolB protein [Polaribacter sp. MED152]
gi|85822074|gb|EAQ43221.1| putative TolB protein [Polaribacter sp. MED152]
Length = 365
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D++G + V++LT +A P+VSP G IVF STR+G LY M+ +G +
Sbjct: 150 DSFDIFVADLEG-NIVKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGTD- 207
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T+ D +SPDG I F S R D G E+Y+
Sbjct: 208 --VKQITDELGYDGGAFFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEMELYIC 265
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ LR+L G+A + P+F P GK I+F+S++ P + ++ I
Sbjct: 266 NADGSDLRQLTDLGNANWS--PFFHPSGKKILFSSNFEAERGFPFN----------LYLI 313
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
+DG +L+R+T D P +
Sbjct: 314 DIDGKNLERVTHGETFDAFPVF 335
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 37/194 (19%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV-----YFKNAFSTVWDPVREAVVYT 474
P+ SPKGD+I F +Y +N DG++ +Q+ Y AF + P +++
Sbjct: 177 PTVSPKGDKIVFTSTRSGDLELYTMNIDGTDVKQITDELGYDGGAF---FSPDGTKIIFR 233
Query: 475 SGGP--------------EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
S P E E +E+++ N D D +R+LT G N P P
Sbjct: 234 SSRPKTEEEIKAYKDLLAEGLVEPTEMELYICNADGSD----LRQLTDLGNANWSPFFHP 289
Query: 521 DGKWIVFRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
GK I+F S + NLY++D +G L R+T G D +S DG+ +AF+S
Sbjct: 290 SGKKILFSSNFEAERGFPFNLYLIDIDGK---NLERVTHGETFDAFPVFSNDGKKLAFSS 346
Query: 577 DRDNPGSGSFEMYL 590
+R+N G +++
Sbjct: 347 NRNNGGGRDTNLFI 360
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +V+TS + S ++++ ++N+D D V+++T + SPDG I
Sbjct: 181 PKGDKIVFTS------TRSGDLELYTMNIDGTD----VKQITDELGYDGGAFFSPDGTKI 230
Query: 526 VFRSTR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+FRS+R YK+L YI +A+G + L L WS +
Sbjct: 231 IFRSSRPKTEEEIKAYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANWSPF---F 287
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
P G+ I F+S+ + F +YLI +G L + + G A P FS DGK + F+
Sbjct: 288 HPSGKKILFSSNFEAERGFPFNLYLIDIDGKNLER-VTHGETFDA-FPVFSNDGKKLAFS 345
Query: 626 SD 627
S+
Sbjct: 346 SN 347
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 27/152 (17%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++++ D EG + +LT D SP G+ I F S R SG E+Y ++ +G
Sbjct: 153 DIFVADLEGNI---VKQLTNEVGYDAEPTVSPKGDKIVFTSTR----SGDLELYTMNIDG 205
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD----------YGGISAEPISTPHQYQPY 645
T ++++ + G +FSPDG I+F S Y + AE + P +
Sbjct: 206 TDVKQI--TDELGYDGGAFFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEM--- 260
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
E++ DGSDL++LT + G W P F
Sbjct: 261 -ELYICNADGSDLRQLT----DLGNANWSPFF 287
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 45/212 (21%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLH-RLTEGPWS 559
R T G +NA S D K +VF+S T G +++M+A+ + ++ G
Sbjct: 49 RQVTFGGDNAEAYWSFDDKQLVFQSNYTKWNVGCDQMFLMNADENFKNSMPPMISTGKGR 108
Query: 560 DTMCNWSPDGEWIAFASD------------RDN-----PGSGSFEMYLIHPNGTGLRKLI 602
T + PD + I +AS R N P SF++++ G +++L
Sbjct: 109 TTCAYFLPDNKHIIYASTHLVDEECPEVPLRKNGKYIWPVYDSFDIFVADLEGNIVKQL- 167
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ G P SP G IVFTS G E++ + +DG+D+K++T
Sbjct: 168 -TNEVGYDAEPTVSPKGDKIVFTSTRSGDL--------------ELYTMNIDGTDVKQIT 212
Query: 663 QNSFEDGTPAWGP-------RFIRPVDVEEVK 687
DG + P R RP EE+K
Sbjct: 213 DELGYDGGAFFSPDGTKIIFRSSRPKTEEEIK 244
>gi|170691331|ref|ZP_02882496.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
graminis C4D1M]
gi|170143536|gb|EDT11699.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
graminis C4D1M]
Length = 430
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 154/384 (40%), Gaps = 86/384 (22%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGAFATRLSYVIKSGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + P+ SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSSIDTEPTFSPDGQSIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A+G G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 308 PQIYKMSAQGESAGGAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQ 363
Query: 595 G---TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
G TGL S P F+ +G+ I++ + G G + +
Sbjct: 364 GGTATGLTDTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAV 403
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ P+WGP
Sbjct: 404 STDGRTRQVLSVQGGSVREPSWGP 427
>gi|146338269|ref|YP_001203317.1| protein tolB [Bradyrhizobium sp. ORS 278]
gi|146191075|emb|CAL75080.1| Protein tolB precursor [Bradyrhizobium sp. ORS 278]
Length = 376
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 149 PRFSPSSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 205
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + P SPDG I F S R G +
Sbjct: 206 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPCYSPDGSQICFESDRGGKPQI 258
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 259 YVMSASGGNA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 311
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPIST 638
R L +AG N P FSP+G+ ++F D GG + + T
Sbjct: 312 ERIL----TAGFHNEGPTFSPNGRVLMFFRDPGGTAGPSLYT 349
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 112 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPSSQEITYMEFGQGDPKV 170
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 171 YLFNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRS 223
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG I F SD GG +P +I+ + G +
Sbjct: 224 TTRLTDTPAI--DTSPCYSPDGSQICFESDRGG------------KP--QIYVMSASGGN 267
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 268 AQRISFGEGSYSTPVWSPR 286
>gi|358375519|dbj|GAA92100.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 650
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 37/218 (16%)
Query: 431 DRIAFVEFPGV---YVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASES 484
+RIA PG+ YV N+DGSN R++ + + W P E +V+TS E A +
Sbjct: 28 NRIA----PGISELYVANADGSNPRRLLGNESTFDYHAQWSPDGEWIVFTS---ERAGDG 80
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAE 543
+ D+ + D D ++ + T+ ++SP+G + F T YK N++I + E
Sbjct: 81 -QSDLYRVRPDGTD----LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIWIQNLE 135
Query: 544 GGEGYGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSG-----------SF 586
G + + +E T+ + WSPDGEW+ F SDR+ P G
Sbjct: 136 TGALWNVTNSSEVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQEL 195
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+Y I P+GTG R+ + + + P FSPDG IVF
Sbjct: 196 SIYAIRPDGTGFRR-VSNRTGYCQGSPKFSPDGSRIVF 232
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 141/350 (40%), Gaps = 68/350 (19%)
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFD 420
R S +H +P SPD + Y R + PL S +RF
Sbjct: 324 RNASLVGYHRSPAWSPDGRHMVYEHVEWDPVRP----------VNKPLYSWSKDWEYRFT 373
Query: 421 GSFPSFSPKGDRIAFVEFPGV----YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
FP S +G ++ + V +N+DG+ ++ + F PVR T+G
Sbjct: 374 DVFPQMSAQG-KVVYTSQQTVNSSLVTMNADGTGLNDIFDGSRF-----PVRVNSSNTNG 427
Query: 477 GPEFASESSEVDIISINVDD--------------VDGVSAVRRLTTNGKNNA-FPSVSPD 521
+ S + +++++ + D V + R TNG NA FP++SPD
Sbjct: 428 TFQ-GSWRGDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPD 486
Query: 522 GKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG------ 569
G+W+V+R L MD GE L W +T ++PDG
Sbjct: 487 GRWLVWREFAYSASEDPIPLGLRRMDLTTGEVVAL----SSSWDNTPM-FAPDGSNRIVF 541
Query: 570 ----EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
W F DN +++ + +G+G+++L + A H ++ +GK I +
Sbjct: 542 TRRTSWPIFGPLDDN-----YDVMTMAVDGSGVKQL--TTLACNDAHAVWTHEGK-IAWA 593
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G E + QPY I +++ DGS+ LTQ+ +ED P + P
Sbjct: 594 TGMFGFQDEATIYDNNQQPYPFIMQMEADGSNWTVLTQSRWEDTMPLYIP 643
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGE 546
I + V + DG + R L + SPDG+WIVF S R G +LY + +G +
Sbjct: 34 ISELYVANADGSNPRRLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPDGTD 93
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L + P + SP+G +AFA N S + I TG + + S
Sbjct: 94 ---LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIW----IQNLETGALWNVTNSS 146
Query: 607 AGRANH--------PYFSPDGKSIVFTSDYGG--ISAEPISTPHQYQPYGEIFKIKLDGS 656
++ P +SPDG+ +VFTSD IS Q I+ I+ DG+
Sbjct: 147 EVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQEL-SIYAIRPDGT 205
Query: 657 DLKRLTQNS-FEDGTPAWGPRFIRPVDVE 684
+R++ + + G+P + P R V E
Sbjct: 206 GFRRVSNRTGYCQGSPKFSPDGSRIVFYE 234
>gi|299134178|ref|ZP_07027371.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp.
1NLS2]
gi|298590925|gb|EFI51127.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp.
1NLS2]
Length = 447
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 47/261 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYT--S 475
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 222 PRFSPSTQEITYMEFGGGDPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQRIIMSLQQ 281
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
GG +S + ++ + + RLT + PS +PDG I F S R G
Sbjct: 282 GG------NSNLYVMDLRS------KSTTRLTDTPAIDTSPSYAPDGSRICFESDRGGKP 329
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G
Sbjct: 330 QIYVMAAGGGAA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDG 382
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L ++G N P F+P+G+ ++F D G + PH +F + +
Sbjct: 383 SGERIL----TSGFHNEGPTFAPNGRVVMFFRDLG-------AGPH-------LFTVDIS 424
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 425 GRNELQVPTPGFAS-DPAWSP 444
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES ++ + + + D DG + VR LT P SP + I + G +
Sbjct: 185 FVDESGPAQRRVKRLTIMDQDGAN-VRYLTRGADLVLTPRFSPSTQEITYMEFGGGDPRV 243
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ +Y++
Sbjct: 244 YLFNVETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLYVMDLRSKS 296
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P ++PDG I F SD GG +P +I+ + G
Sbjct: 297 TTRLTDTPAI--DTSPSYAPDGSRICFESDRGG---KP-----------QIYVMAAGGGA 340
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 341 AQRI---SFGDGSYSTPVWSPR 359
>gi|94494977|ref|ZP_01301558.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58]
gi|94425243|gb|EAT10263.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58]
Length = 978
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFAS 482
S SP G +A ++++ + G R++ YF +A VW P ++Y FA
Sbjct: 42 SASPDGKWLAVDLQGSLWIIPAAGGKARRITDYFNDARQPVWAPDGSHLLY------FAY 95
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D+ +I D D +RRLT ++ P SPDGK I F S R+G +++ MD
Sbjct: 96 RDGGYDLWTIKPDGSD----MRRLTQGAYDDREPVYSPDGKTIAFSSDRSGNYDIWTMDV 151
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + +++ P D M WSPDG +A+A G + L + L+K+
Sbjct: 152 ATG---AMKQISSNPREDRMPTWSPDGRRVAYAGAEGMMGGALYVTDLATGQESLLKKV- 207
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G+A+ P F P G D G
Sbjct: 208 ----EGKADAPSFGPGGALAYVVQDASG 231
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 76/208 (36%), Gaps = 60/208 (28%)
Query: 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
+ P SP G RIAFV +Y+V+S G G PE
Sbjct: 310 THPRLSPDGSRIAFVALGDLYIVSSKG---------------------------GTPE-- 340
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIM 540
LT + +A SPDG+ IVF S R G L+I
Sbjct: 341 -----------------------NLTKDAALDADADWSPDGRRIVFSSDRVGGLPQLFIK 377
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
D + G+ L + P WSPDG+ IAF D G + +G
Sbjct: 378 DLKTGKDRQLTNMDTQPLG---AAWSPDGKQIAFI---DVDGRWGVAGVCVVDVASGKVT 431
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDY 628
+Q+ S G+ P +S DGK +V + Y
Sbjct: 432 RLQT-SLGQPGSPSWSADGKYVVISLSY 458
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 26/111 (23%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+W+A D GS +++I G R++ + R P ++PDG +++
Sbjct: 44 SPDGKWLAV----DLQGS----LWIIPAAGGKARRITDYFNDAR--QPVWAPDGSHLLYF 93
Query: 626 SDYGGISAEPISTPHQYQPYG-EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ Y+ G +++ IK DGSD++RLTQ +++D P + P
Sbjct: 94 A---------------YRDGGYDLWTIKPDGSDMRRLTQGAYDDREPVYSP 129
>gi|154246985|ref|YP_001417943.1| beta-propeller repeat-containing to-pal system protein TolB
[Xanthobacter autotrophicus Py2]
gi|154161070|gb|ABS68286.1| Tol-Pal system beta propeller repeat TolB [Xanthobacter
autotrophicus Py2]
Length = 450
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P V+++N + R V + +FS + P + V+ +
Sbjct: 223 PRFSPTSQEITYMSYGAGDPKVFLLNIETGQREIVGNFPGMSFSPRFAPDGQRVIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I +++ A RLT + P SPDG+ I F S R G +
Sbjct: 280 ---LQQGGNSNIFVMDLRS----RATTRLTDTAAIDTAPCYSPDGRQICFESDRGGTSQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G + WSP G+WIA+ + G F + ++ +G+G
Sbjct: 333 YVMNADGS---GARRISFGNARYSTPVWSPKGDWIAYTRQAE----GRFAIGVMRTDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P F+P+G+ I+F D GG S ++ + + G
Sbjct: 386 ERVLTE----GYHNEGPTFAPNGRVIMFFRDPGGASGP------------SLYSVDVTGY 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ S+ PAW P
Sbjct: 430 NEQRVPTPSYAS-DPAWSP 447
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SP + I + S G +++++ E G+ + P ++PDG+ + +
Sbjct: 223 PRFSPTSQEITYMSYGAGDPKVFLLNIETGQ---REIVGNFPGMSFSPRFAPDGQRVIMS 279
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
+ G+ ++++ +L + + A P +SPDG+ I F SD GG S
Sbjct: 280 LQQ----GGNSNIFVMDLRSRATTRLTDTAAIDTA--PCYSPDGRQICFESDRGGTS--- 330
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+I+ + DGS +R++ + TP W P+
Sbjct: 331 -----------QIYVMNADGSGARRISFGNARYSTPVWSPK 360
>gi|163854156|ref|YP_001642199.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium extorquens PA1]
gi|218533101|ref|YP_002423917.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium extorquens CM4]
gi|240141615|ref|YP_002966095.1| protein tolB [Methylobacterium extorquens AM1]
gi|418061456|ref|ZP_12699314.1| Protein tolB [Methylobacterium extorquens DSM 13060]
gi|163665761|gb|ABY33128.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
extorquens PA1]
gi|218525404|gb|ACK85989.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
extorquens CM4]
gi|240011592|gb|ACS42818.1| protein tolB precursor [Methylobacterium extorquens AM1]
gi|373564987|gb|EHP91058.1| Protein tolB [Methylobacterium extorquens DSM 13060]
Length = 446
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 44/261 (16%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P +SP G IAF+ + P V +++ + R+ V + + S + P +V +
Sbjct: 216 PRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKRQTVGNFASMSASPRFSPDGRRLVMS-- 273
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYK 535
+ DI+++++ S + T G + PS +PDG IVF S R G +
Sbjct: 274 ----VQQGGNADIVTVDI-----ASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQ 324
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M G +G RL+ G S + WSP G+ IAF R G F + ++ P+G
Sbjct: 325 QIYVM---GADGSNPRRLSFGEGSASQPAWSPRGDLIAFTRQR----KGGFAICVMKPDG 377
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L + G N P F+P+G+ ++F D GG Q G+++ + +
Sbjct: 378 SGERVLTE----GFHNESPTFAPNGQYVMFFRDPGG------------QGGGKLYMVDIT 421
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + + SF P W P
Sbjct: 422 GKVEQPVPTPSFAS-DPTWSP 441
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG 549
+ V D DG + VR LT G + P SP G+ I F + G + + ++D E G+
Sbjct: 192 LMVMDQDGAN-VRALTGGGDVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGK--- 247
Query: 550 LHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R T G ++ + +SPDG + + + G+ ++ + + Q +
Sbjct: 248 --RQTVGNFASMSASPRFSPDGRRLVMSVQQ----GGNADIVTVDIASKAQTPVTQGLAI 301
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P ++PDG IVF SD GG +I+ + DGS+ +RL+
Sbjct: 302 --DTSPSYAPDGSQIVFESDRGGSQ--------------QIYVMGADGSNPRRLSFGEGS 345
Query: 668 DGTPAWGPR 676
PAW PR
Sbjct: 346 ASQPAWSPR 354
>gi|414168774|ref|ZP_11424737.1| protein tolB [Afipia clevelandensis ATCC 49720]
gi|410887510|gb|EKS35320.1| protein tolB [Afipia clevelandensis ATCC 49720]
Length = 470
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + +V +
Sbjct: 245 PRFSPSTQEITYMEFGKGDPRVYLFNVETGQREIVGNFPGMSFSPRFSPDGQRIVMS--- 301
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ ++ RLT + PS +PDG I F S R G +
Sbjct: 302 ---MQQGGNSNLFVMDLRS----KSMTRLTDTPAIDTSPSYAPDGSRISFESDRGGKPQI 354
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 355 YVMGANGGAA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 407
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
R L ++G N P F+P+G+ ++F + GG
Sbjct: 408 ERIL----TSGFHNEGPTFAPNGRVVMFFRESGG 437
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS-----FPSFS 427
+P SPD R+ S ++ GN+ L + +++S S+ R + PS++
Sbjct: 287 FSPRFSPDGQRIVM------SMQQGGNSNLFVMDLRSK----SMTRLTDTPAIDTSPSYA 336
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVVYT-SGGPEF 480
P G RI+F P +YV+ ++G +++ F + ++ST VW P + + +T GG +F
Sbjct: 337 PDGSRISFESDRGGKPQIYVMGANGGAAQRISFGEGSYSTPVWSPRGDYIAFTKQGGGQF 396
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
SI + DG R+ T+G +N P+ +P+G+ ++F G +LY +
Sbjct: 397 ----------SIGIMKPDGSG--ERILTSGFHNEGPTFAPNGRVVMFFRESGGGPSLYTV 444
Query: 541 DAEG 544
D G
Sbjct: 445 DISG 448
>gi|82523888|emb|CAI78611.1| tolB protein [uncultured delta proteobacterium]
Length = 437
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDT 561
+ RLT + + P+ SPDGK I F S R G N+Y M++ G + RLT EG + +T
Sbjct: 283 ISRLTRSNSIDISPTWSPDGKKIAFVSDRGGNPNIYTMNSNGQN---VRRLTFEGTY-NT 338
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+WSP G+ I F + RDN G F++Y I P+G+GL ++ + ++ P +SPDG+
Sbjct: 339 SPDWSPKGDNIVF-TGRDN--LGYFQIYTIRPDGSGLCQI--TFNSADNEEPSWSPDGRF 393
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
IV++S G S I+ + +G+ ++L + E P W PR
Sbjct: 394 IVYSSTIEGKSG--------------IYIMLFNGTGRRKLINLNGEQTYPVWSPRL 435
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 24/151 (15%)
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
++ GY ++Y+M+ G + RLT D WSPDG+ IAF SDR G+ +Y
Sbjct: 266 SKDGYPDIYLMNTNGNI---ISRLTRSNSIDISPTWSPDGKKIAFVSDR----GGNPNIY 318
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
++ NG +R+L G+ + P +SP G +IVFT Y +I+
Sbjct: 319 TMNSNGQNVRRLTFEGTYNTS--PDWSPKGDNIVFTG-------------RDNLGYFQIY 363
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP--RFI 678
I+ DGS L ++T NS ++ P+W P RFI
Sbjct: 364 TIRPDGSGLCQITFNSADNEEPSWSPDGRFI 394
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 408 KSPLPDISLFRFDGSF-------------PSFSPKGDRIAFVE----FPGVYVVNSDGSN 450
K PDI L +G+ P++SP G +IAFV P +Y +NS+G N
Sbjct: 267 KDGYPDIYLMNTNGNIISRLTRSNSIDISPTWSPDGKKIAFVSDRGGNPNIYTMNSNGQN 326
Query: 451 RRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
R++ F+ ++T W P + +V+T + I DG S + ++T
Sbjct: 327 VRRLTFEGTYNTSPDWSPKGDNIVFTG--------RDNLGYFQIYTIRPDG-SGLCQITF 377
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
N +N PS SPDG++IV+ ST G +YIM G G +L T WSP
Sbjct: 378 NSADNEEPSWSPDGRFIVYSSTIEGKSGIYIMLFNGT---GRRKLINLNGEQTYPVWSP 433
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 33/231 (14%)
Query: 398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRR 452
GN L L N+ + + IS F+ S+S K IA +P +Y++N++G+
Sbjct: 225 GNPDLYLHNLLTGRIYKISGFKGINLSASWSDKHQMIATSLSKDGYPDIYLMNTNGNIIS 284
Query: 453 QVYFKNAF--STVWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
++ N+ S W P + + + S G P + +S VRRLT
Sbjct: 285 RLTRSNSIDISPTWSPDGKKIAFVSDRGGNPNIYTMNSNG-------------QNVRRLT 331
Query: 508 TNGKNNAFPSVSPDGKWIVFRST-RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
G N P SP G IVF GY +Y + +G GL ++T + +WS
Sbjct: 332 FEGTYNTSPDWSPKGDNIVFTGRDNLGYFQIYTIRPDGS---GLCQITFNSADNEEPSWS 388
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
PDG +I ++S + G +Y++ NGTG RKLI G +P +SP
Sbjct: 389 PDGRFIVYSSTIE----GKSGIYIMLFNGTGRRKLINLN--GEQTYPVWSP 433
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391
+K +AT Y I L + N LTR + ++P SPD ++ + RG
Sbjct: 256 DKHQMIATSLSKDGYPDIYLMNTNGNIISRLTR---SNSIDISPTWSPDGKKIAFVSDRG 312
Query: 392 GSTREDGNNQLLLENIKSPLPDISLFRFDGSF---PSFSPKGDRIAF-----VEFPGVYV 443
G+ + + S ++ F+G++ P +SPKGD I F + + +Y
Sbjct: 313 GNPN--------IYTMNSNGQNVRRLTFEGTYNTSPDWSPKGDNIVFTGRDNLGYFQIYT 364
Query: 444 VNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS 475
+ DGS Q+ F +A + W P +VY+S
Sbjct: 365 IRPDGSGLCQITFNSADNEEPSWSPDGRFIVYSS 398
>gi|338972043|ref|ZP_08627422.1| TolB protein precursor [Bradyrhizobiaceae bacterium SG-6C]
gi|338234937|gb|EGP10048.1| TolB protein precursor [Bradyrhizobiaceae bacterium SG-6C]
Length = 470
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + +V +
Sbjct: 245 PRFSPSTQEITYMEFGKGDPRVYLFNVETGQREIVGNFPGMSFSPRFSPDGQRIVMS--- 301
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ ++ RLT + PS +PDG I F S R G +
Sbjct: 302 ---MQQGGNSNLFVMDLRS----KSMTRLTDTPAIDTSPSYAPDGSRISFESDRGGKPQI 354
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 355 YVMGANGGAA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 407
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
R L ++G N P F+P+G+ ++F + GG
Sbjct: 408 ERIL----TSGFHNEGPTFAPNGRVVMFFRESGG 437
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS-----FPSFS 427
+P SPD R+ S ++ GN+ L + +++S S+ R + PS++
Sbjct: 287 FSPRFSPDGQRIVM------SMQQGGNSNLFVMDLRSK----SMTRLTDTPAIDTSPSYA 336
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVVYT-SGGPEF 480
P G RI+F P +YV+ ++G +++ F + ++ST VW P + + +T GG +F
Sbjct: 337 PDGSRISFESDRGGKPQIYVMGANGGAAQRISFGEGSYSTPVWSPRGDYIAFTKQGGGQF 396
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
SI + DG R+ T+G +N P+ +P+G+ ++F G +LY +
Sbjct: 397 ----------SIGIMKPDGSG--ERILTSGFHNEGPTFAPNGRVVMFFRESGGGPSLYTV 444
Query: 541 DAEG 544
D G
Sbjct: 445 DISG 448
>gi|95929959|ref|ZP_01312699.1| TolB-like [Desulfuromonas acetoxidans DSM 684]
gi|95133928|gb|EAT15587.1| TolB-like [Desulfuromonas acetoxidans DSM 684]
Length = 433
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 37/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGP 478
P FSP G + F + P +Y R+++Y K A + + + + Y G
Sbjct: 207 PDFSPLGREVIFTSYRQGNPDLY--------RKEIYTGKEARISRYKGLNISGRYRHDGR 258
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
E A S I ++ + G +R+T + + PS SP G +VF S R G NL+
Sbjct: 259 ELALTLSRDGNAEIYLESLSG-QLHKRVTNSWAIDVDPSWSPIGDQLVFVSNRQGNPNLF 317
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ D G+ + RLT + WSPDG+ I F+ G+F ++ I +G
Sbjct: 318 VADLIDGQ---VRRLTYNGKYNATPAWSPDGKRIVFS----RLEGGAFNLFSIGVDGKEE 370
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
R+L + AG HP +SPDG+ IV+++D G A I+ ++ DGS
Sbjct: 371 RQL--TFGAGNKEHPRWSPDGRFIVYSNDISGKKA--------------IYVMRADGSGQ 414
Query: 659 KRLTQNSFEDGTPAW 673
+R++ + PAW
Sbjct: 415 RRISTLDADCSHPAW 429
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 464 WDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520
W P+ + +V+ S G P D +DG VRRLT NGK NA P+ SP
Sbjct: 297 WSPIGDQLVFVSNRQGNPNL-----------FVADLIDG--QVRRLTYNGKYNATPAWSP 343
Query: 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
DGK IVF G NL+ + +G E +LT G + WSPDG +I +++D
Sbjct: 344 DGKRIVFSRLEGGAFNLFSIGVDGKEE---RQLTFGAGNKEHPRWSPDGRFIVYSNDI-- 398
Query: 581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
SG +Y++ +G+G R++ S +HP +S
Sbjct: 399 --SGKKAIYVMRADGSGQRRI--STLDADCSHPAWS 430
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 107/263 (40%), Gaps = 57/263 (21%)
Query: 432 RIAFVE----FPGVYVVNSDG------SNRRQVYFKNAFSTVWDPVREAVVYTS---GGP 478
RIAF+ +Y++ SDG +N R + FS P+ V++TS G P
Sbjct: 171 RIAFISNQSGHKELYLMESDGYDPKRITNHRSLVLNPDFS----PLGREVIFTSYRQGNP 226
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ + I +S + L +G+ DG+ + +R G +Y
Sbjct: 227 DLYRKE-------IYTGKEARISRYKGLNISGR------YRHDGRELALTLSRDGNAEIY 273
Query: 539 IMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
+ G LH+ W+ D +WSP G+ + F S+R G+ +++
Sbjct: 274 LESLSGQ----LHKRVTNSWAIDVDPSWSPIGDQLVFVSNR----QGNPNLFVADLIDGQ 325
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+R+L +G P +SPDGK IVF+ GG +F I +DG +
Sbjct: 326 VRRLTYNGKYNAT--PAWSPDGKRIVFSRLEGGAF--------------NLFSIGVDGKE 369
Query: 658 LKRLTQNSFEDGTPAWGP--RFI 678
++LT + P W P RFI
Sbjct: 370 ERQLTFGAGNKEHPRWSPDGRFI 392
>gi|149915620|ref|ZP_01904146.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b]
gi|149810512|gb|EDM70355.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b]
Length = 440
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP G ++ + FP +YV+ + RR + ++ +F+ + P VVY+
Sbjct: 211 PRFSPDGRQVLYTSYESGFPRIYVLQVGSAQRRVLEQQDGTMSFAPRFAPDGRRVVYS-- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S D+ +++ G RLT PS SPDG IVF S R+G
Sbjct: 269 ----LSSGGNTDLYMMDI----GSGTSTRLTNAPSIETAPSFSPDGSRIVFESDRSGSPQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM + GGE R++ G WSP G+ IAF G F + +I +G+
Sbjct: 321 LYIMPSAGGEA---QRISFGQGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVIRTDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G Q ++ + + G
Sbjct: 374 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGA-----------QGSASLYSVDISGR 419
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+++ T+ D P+W P
Sbjct: 420 NLRKVPTEAGGSD--PSWSP 437
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 91/229 (39%), Gaps = 64/229 (27%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD------- 541
I + + D DG + V LT + P SPDG+ +++ S +G+ +Y++
Sbjct: 185 IKRLAIMDYDGAN-VSYLTDSASIVLAPRFSPDGRQVLYTSYESGFPRIYVLQVGSAQRR 243
Query: 542 --------------------------AEGGE--------GYGLH-RLTEGPWSDTMCNWS 566
+ GG G G RLT P +T ++S
Sbjct: 244 VLEQQDGTMSFAPRFAPDGRRVVYSLSSGGNTDLYMMDIGSGTSTRLTNAPSIETAPSFS 303
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG I F SDR SGS ++Y I P+ G + I G GR P +SP G I FT
Sbjct: 304 PDGSRIVFESDR----SGSPQLY-IMPSAGGEAQRISFGQ-GRYGTPVWSPRGDLIAFT- 356
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q + I I+ DGS+ +RL SF D P W P
Sbjct: 357 -------------KQSKGRFHIGVIRTDGSE-ERLLTASFLDEGPTWSP 391
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 370 THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-------LPDISLFRFDGS 422
T P +PD RV Y G GN L + +I S P I +
Sbjct: 251 TMSFAPRFAPDGRRVVYSLSSG------GNTDLYMMDIGSGTSTRLTNAPSIE------T 298
Query: 423 FPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVVYTSG 476
PSFSP G RI F P +Y++ S G +++ F + + T VW P + + +T
Sbjct: 299 APSFSPDGSRIVFESDRSGSPQLYIMPSAGGEAQRISFGQGRYGTPVWSPRGDLIAFT-- 356
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR--TG 533
I V DG + RL T + P+ SP+G+ I+F R T+ G
Sbjct: 357 -------KQSKGRFHIGVIRTDG--SEERLLTASFLDEGPTWSPNGRVIMFTRETQGAQG 407
Query: 534 YKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSP 567
+LY +D G L ++ TE SD +WSP
Sbjct: 408 SASLYSVDI---SGRNLRKVPTEAGGSD--PSWSP 437
>gi|85858720|ref|YP_460922.1| tolB protein [Syntrophus aciditrophicus SB]
gi|85721811|gb|ABC76754.1| tolB protein [Syntrophus aciditrophicus SB]
Length = 496
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGG 477
P +SP G +AF + P ++VV+ GS +++ + W P +++ T
Sbjct: 265 PRWSPDGRYLAFSSYRDGKPDIFVVSPSGSGLKKIVSFQGLNLPGAWSPDGRSLLLT--- 321
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +I ++V VRRLT N + P SPDG+ I F S +G +
Sbjct: 322 ---LSKDGNEEIYVMDVRS----GQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQI 374
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+GG+ + RLT +T WSP G IA+ GSG ++++ I +G
Sbjct: 375 YVMNADGGD---VRRLTYSGNYNTTPAWSPRGGKIAYEG---KVGSG-YQIFSIDEDGGN 427
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+R+L + AG P +SPDG+ + F+ GG S I + + +
Sbjct: 428 VRQL--TSGAGDHEFPSWSPDGRFLTFSLRSGGRS--------------RINILNANTLE 471
Query: 658 LKRLTQNSFEDGTPAWGPRF 677
++ L +++ PAW PR
Sbjct: 472 VRTLYESTDRCLGPAWSPRL 491
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G L R+ P WSPDG ++AF+S RD G +++++ P+G+GL+K++
Sbjct: 248 DGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRD----GKPDIFVVSPSGSGLKKIV--- 300
Query: 606 SAGRANHP-YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
S N P +SPDG+S++ T G EI+ + + ++RLT+N
Sbjct: 301 SFQGLNLPGAWSPDGRSLLLTLSKDGNE--------------EIYVMDVRSGQVRRLTRN 346
Query: 665 SFEDGTPAWGP 675
S D +P W P
Sbjct: 347 SAIDVSPVWSP 357
>gi|320107208|ref|YP_004182798.1| WD40-like beta Propeller containing protein [Terriglobus saanensis
SP1PR4]
gi|319925729|gb|ADV82804.1| WD40-like beta Propeller containing protein [Terriglobus saanensis
SP1PR4]
Length = 444
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 34/256 (13%)
Query: 424 PSFSPKGDRIAFVEF--PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
P SP RIAF G + R + F A T P +++ G + A
Sbjct: 214 PRISPDNSRIAFSSLGREGFQIRVFSLLLNRMIAFPAAAGTNLSPA-----WSANGAQIA 268
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIM 540
SS I + D +G S RR+T+ + P +P G I + S RTG LY M
Sbjct: 269 YSSSRSGDPEIWIADSNG-SGPRRVTSFRGPDVSPVWNPKTGSQIAWISGRTGLPQLYTM 327
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-NPGS-GSFEMYLIHPNGTGL 598
DA+G G+ R+T+G ++ T +WSP+G+++ FA DR PG+ G ++Y++
Sbjct: 328 DADGA---GVTRMTDGGYA-TSPSWSPNGQFLTFAWDRKYGPGAPGGQDIYVME---IAS 380
Query: 599 RKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
++ IQ + GR + P +SPDG+ IV+ S+ GG EI+ + DG+
Sbjct: 381 KRWIQLTHDTGRCDFPSWSPDGRHIVYASNAGG--------------RWEIWTMLADGTQ 426
Query: 658 LKRLTQNSFEDGTPAW 673
+L+ N D P W
Sbjct: 427 RHKLSTNGAND-MPNW 441
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 42/257 (16%)
Query: 368 PKTH----HLNPFISPDSSRVGYHKCRGGSTREDGNNQL--LLENIKSPLPDISLFRFDG 421
P TH L+P ISPD+SR+ + RE ++ LL N P +
Sbjct: 203 PVTHLGTVSLSPRISPDNSRIAFSSL----GREGFQIRVFSLLLNRMIAFPAAAGTNLS- 257
Query: 422 SFPSFSPKGDRIAFVEF----PGVYVVNSDGSN-RRQVYFKNA-FSTVWDPVREAVVYTS 475
P++S G +IA+ P +++ +S+GS RR F+ S VW+P
Sbjct: 258 --PAWSANGAQIAYSSSRSGDPEIWIADSNGSGPRRVTSFRGPDVSPVWNP--------K 307
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--- 532
G + A S + + D DG R T+G PS SP+G+++ F R
Sbjct: 308 TGSQIAWISGRTGLPQLYTMDADGAGVTR--MTDGGYATSPSWSPNGQFLTFAWDRKYGP 365
Query: 533 ---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
G +++Y+M+ +LT +WSPDG I +AS+ G +E++
Sbjct: 366 GAPGGQDIYVMEIASKR---WIQLTHDTGRCDFPSWSPDGRHIVYASN----AGGRWEIW 418
Query: 590 LIHPNGTGLRKLIQSGS 606
+ +GT KL +G+
Sbjct: 419 TMLADGTQRHKLSTNGA 435
>gi|42521812|ref|NP_967192.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
HD100]
gi|67461965|sp|Q6MRB2.1|TOLB_BDEBA RecName: Full=Protein TolB; Flags: Precursor
gi|39574342|emb|CAE77846.1| Adventurous gliding motility protein W [Bdellovibrio bacteriovorus
HD100]
Length = 461
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 58/272 (21%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV---REAVVYTSG---G 477
P++SP G +IA+ + R F+NA + D R + Y G G
Sbjct: 221 PAWSPDGKKIAYTSY----------VKRVGAKFRNADMLLLDLTTGKRSLISYRQGINSG 270
Query: 478 PEFASESSEV----------DIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWI 525
F+++ + DI + +D + V ++T G N P+VSP G +
Sbjct: 271 ASFSADGKHIYLTISQGNSPDIYKMGLDG----TLVGKITNGPAGALNVEPTVSPQG-LL 325
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
F S R G +Y DA G + R+T ++ +WSPDG+ IAFA DN +
Sbjct: 326 SFSSDRAGRPMIYTADAAGNN---VKRITFAGVFNSSPSWSPDGKKIAFAGQSDN----N 378
Query: 586 FEMYLIHPNGTGLRKLIQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
F++++++ +GTG+ +L + G P FSPDG+ +++TS+ G + IST
Sbjct: 379 FDIFVMNADGTGMIRLTSAKKPNGRMASNEDPSFSPDGRFVMYTSNRTGKNQIYIST--- 435
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+DG++ +R+T ++ P W
Sbjct: 436 -----------VDGTEERRVTNDNNNYYKPKW 456
>gi|340788589|ref|YP_004754054.1| periplasmic protein involved in uptake [Collimonas fungivorans
Ter331]
gi|340553856|gb|AEK63231.1| periplasmic protein involved in uptake [Collimonas fungivorans
Ter331]
Length = 427
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 40/258 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VYV N R V Y + + W P G
Sbjct: 201 PAWSPDGTKVAYVSFEAKKPVVYVQNLITKQRIVVANYKGSNSAPSWSP---------DG 251
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ A + + + V + DG +RRLT + P S DG+ I F S R+G +
Sbjct: 252 SKLAIALARDGLTQVYVVNSDG-GGLRRLTQTNGIDTEPQFSADGQNIYFTSDRSGGPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A GG+ R+T G + SPDG+ +A+ S R G F++Y +
Sbjct: 311 YKMSASGGDA---QRVTFGGTYNISPRISPDGKTLAYISQR----GGRFQLYALDLTNGQ 363
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
++L + + P FSP+GK I++ ++ G G + + +DG
Sbjct: 364 EQRLSDTV---KDESPSFSPNGKYIMYATESG--------------RRGSLAVVSVDGRV 406
Query: 658 LKRLTQNSFEDGTPAWGP 675
+RLT + + P WGP
Sbjct: 407 KQRLTMQAGDIREPTWGP 424
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
++P SPD ++V Y N + + I ++ ++ S PS+SP G +
Sbjct: 199 ISPAWSPDGTKVAYVSFEAKKPVVYVQNLITKQRIV-----VANYKGSNSAPSWSPDGSK 253
Query: 433 IAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFASE 483
+A VYVVNSDG R++ N T + + + +TS GGP+
Sbjct: 254 LAIALARDGLTQVYVVNSDGGGLRRLTQTNGIDTEPQFSADGQNIYFTSDRSGGPQIYKM 313
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
S+ G A +R+T G N P +SPDGK + + S R G LY +D
Sbjct: 314 SAS------------GGDA-QRVTFGGTYNISPRISPDGKTLAYISQRGGRFQLYALDLT 360
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G+ RL++ D ++SP+G++I +A++ GS + ++ +G ++L
Sbjct: 361 NGQE---QRLSD-TVKDESPSFSPNGKYIMYATESGRRGS----LAVVSVDGRVKQRLTM 412
Query: 604 SGSAGRANHPYFSP 617
AG P + P
Sbjct: 413 --QAGDIREPTWGP 424
>gi|426402172|ref|YP_007021143.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425858840|gb|AFX99875.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 461
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 58/272 (21%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV---REAVVYTSG---G 477
P++SP G +IA+ + R F+NA + D R + Y G G
Sbjct: 221 PAWSPDGKKIAYTSY----------VKRVGAKFRNADMLLLDLTTGKRSLISYRQGINSG 270
Query: 478 PEFASESSEV----------DIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWI 525
F+++ + DI + +D + V ++T G N P+VSP G +
Sbjct: 271 ASFSADGKHIYLTISQGNSPDIYKMGLDG----TLVGKITNGPAGALNVEPTVSPQG-LL 325
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
F S R G +Y DA G + R+T ++ +WSPDG+ IAFA DN +
Sbjct: 326 SFSSDRAGRPMIYTADAAGNN---VKRITFAGVFNSSPSWSPDGKKIAFAGQSDN----N 378
Query: 586 FEMYLIHPNGTGLRKLIQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
F++++++ +GTG+ +L + G P FSPDG+ +++TS+ G + IST
Sbjct: 379 FDIFVMNADGTGMIRLTSAKKPNGRMASNEDPSFSPDGRFVMYTSNRTGKNQIYIST--- 435
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+DG++ +R+T ++ P W
Sbjct: 436 -----------VDGTEERRVTNDNNNYYKPKW 456
>gi|357030734|ref|ZP_09092678.1| translocation protein TolB [Gluconobacter morbifer G707]
gi|356415428|gb|EHH69071.1| translocation protein TolB [Gluconobacter morbifer G707]
Length = 453
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 29/209 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P F+P D++AF+ + P VY+ + S R+QV + +F+ + P VV +
Sbjct: 220 PRFNPVRDQVAFLSYANNRPRVYLFDL-ASGRQQVLGEFNGISFAPRFSPDGSRVVLS-- 276
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYK 535
A+ S DI +++ + R++T++G + P SPDG IVF S R G
Sbjct: 277 ----ATRGSGSDIYVVDLAS----GSKRQITSSGGAIDTSPCFSPDGSQIVFNSDRGGSP 328
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LYIM A GG G R++ G WSP G+ IAF GSG F + +++P+G
Sbjct: 329 QLYIMSASGG---GAKRISYGSGQYGSPVWSPRGDLIAFT----RIGSGGFSLGVMNPDG 381
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
TG R L Q + A+ F P+G+ + F
Sbjct: 382 TGERILTQGFTVEGAS---FCPNGRVLAF 407
>gi|170747178|ref|YP_001753438.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium radiotolerans JCM 2831]
gi|170653700|gb|ACB22755.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
radiotolerans JCM 2831]
Length = 445
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 44/261 (16%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSG 476
P +SP IAF+ P V ++N + +R+ + ++ S + P +V +
Sbjct: 215 PRYSPATQDIAFMAQATGHQPRVQMINLETGSRQALGNVDSMSASPRFSPDGRKIVMS-- 272
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYK 535
+ DI+++++ S +R TNG + P+ SPDG I F S R G +
Sbjct: 273 ----VQQGGNADIVTMDL-----ASKAQRSITNGMAIDTSPTYSPDGSQIAFESDRGGSQ 323
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M G +G HR+T GP S + +SP G+ IA+ R+ G F + + P+G
Sbjct: 324 QVYVM---GADGSNPHRITFGPGSASQPAFSPRGDLIAYTRQRN----GGFAICVSKPDG 376
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L + G N P F+P+G+ ++F D GG Q G++F + +
Sbjct: 377 SGERVLTE----GFHNEGPTFAPNGQYVLFFRDPGG------------QGGGKLFMVDIT 420
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + + ++ P W P
Sbjct: 421 GKVEQPVPTPAYAS-DPTWSP 440
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGL 550
+ V D DG + VR +TT + P SP + I F + TG++ + +++ E G L
Sbjct: 192 LMVMDQDGAN-VRAITTGEMSIVAPRYSPATQDIAFMAQATGHQPRVQMINLETGSRQAL 250
Query: 551 -----------------------------------------HRLTEGPWSDTMCNWSPDG 569
+T G DT +SPDG
Sbjct: 251 GNVDSMSASPRFSPDGRKIVMSVQQGGNADIVTMDLASKAQRSITNGMAIDTSPTYSPDG 310
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
IAF SDR GS ++Y++ +G+ ++ + G A+ P FSP G I +T
Sbjct: 311 SQIAFESDR----GGSQQVYVMGADGSNPHRI--TFGPGSASQPAFSPRGDLIAYTRQRN 364
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G A +S P DGS + LT+ F + P + P
Sbjct: 365 GGFAICVSKP--------------DGSGERVLTEG-FHNEGPTFAP 395
>gi|399156090|ref|ZP_10756157.1| WD40 domain-containing protein [SAR324 cluster bacterium SCGC
AAA001-C10]
Length = 453
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 132/280 (47%), Gaps = 38/280 (13%)
Query: 411 LPDISLFRFDGSFPSFSPKGDRIAFVEFP--GVYVVNSD-----GSNRRQVYFKNAFSTV 463
L +S +F PS+SPKGD I + G ++ +D G R V ++ +
Sbjct: 196 LAAVSRNKFINLLPSWSPKGDAIVYTTLSRRGTAIMFNDCLKVVGCKYRPVKILSS-NIS 254
Query: 464 WDPVREAVVYTSGGPEFASESSEVDIIS----INVDDVDGVS-AVRRLTTNGKNNAFPSV 518
+ + ++ SGG F++ + +S ++ + D + V R+TT+ + P +
Sbjct: 255 AAGISKNILSVSGGTWFSNGHKLIVTLSRKGNSDLYEFDRLKRKVIRMTTHRAIDTVPDL 314
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
SPD + ++F S R+G++ +Y + + +LT G S + WSPDG IAF+
Sbjct: 315 SPDNQHLIFVSDRSGHEQIYYLKLGTKISF---QLTFGRGSSSDPVWSPDGTLIAFS--- 368
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
SG +++L+ P TG + G + P +SPDG+ IVF S G+
Sbjct: 369 -KISSGHSQIHLMDPF-TGEDNFLTRGRFN-SEQPSWSPDGRQIVFVSSSTGVD------ 419
Query: 639 PHQYQPYGEIFKIKLDGSDLKRLTQN--SFEDGTPAWGPR 676
+++ + +DG+ +RLT+ FE+G P+W R
Sbjct: 420 --------KLYIMFIDGTGRRRLTRTPRDFEEGGPSWTAR 451
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 39/187 (20%)
Query: 387 HKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNS 446
HK +R+ ++ + +K + ++ R + P SP + FV S
Sbjct: 275 HKLIVTLSRKGNSDLYEFDRLKRKVIRMTTHRAIDTVPDLSPDNQHLIFV---------S 325
Query: 447 DGSNRRQVYF-----KNAFST----------VWDPVREAVVYTSGGPEFASESSEVDIIS 491
D S Q+Y+ K +F VW P + ++ + +S S++ ++
Sbjct: 326 DRSGHEQIYYLKLGTKISFQLTFGRGSSSDPVWSPDGTLIAFS----KISSGHSQIHLM- 380
Query: 492 INVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
D + T G+ N+ PS SPDG+ IVF S+ TG LYIM +G G
Sbjct: 381 ------DPFTGEDNFLTRGRFNSEQPSWSPDGRQIVFVSSSTGVDKLYIMFIDGT---GR 431
Query: 551 HRLTEGP 557
RLT P
Sbjct: 432 RRLTRTP 438
>gi|295675612|ref|YP_003604136.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1002]
gi|295435455|gb|ADG14625.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1002]
Length = 430
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 150/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y G + D + Q + SP P IS P++SP
Sbjct: 154 KLMGNRGVFATRLSYVIKSGNRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P+ SPDG+WI F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPTYSPDGQWIYFTSDRGGAPQIYKMPA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGESAGNAQRVTFTGSYNTSPRVSPDGKELAYISRV----GGGFKLYIQDLQGGTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTSHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>gi|220924307|ref|YP_002499609.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium nodulans ORS 2060]
gi|219948914|gb|ACL59306.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
nodulans ORS 2060]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P +SP I ++ + P V V+N + R+ + K ST + ++ G
Sbjct: 211 PRYSPATQDITYMSQITGQQPRVQVINLETGARQVIPTKAEMST-------SPRFSPDGR 263
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ SI V D+ + R N + + PS SPDG+ IVF S R G + +Y
Sbjct: 264 RLVMSDQDGGNASIYVMDLASKAQTRVTNANAIDTS-PSFSPDGREIVFESDRGGQQQIY 322
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+M G +G R++ G S + WSP G++IAF R GSF + ++ P+G+G
Sbjct: 323 VM---GADGSNPRRISFGEGSASQPAWSPRGDYIAFTRQR----KGSFAICIMKPDGSGE 375
Query: 599 RKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L + G N P ++P+G+ ++F D GG Q G+++ + + G
Sbjct: 376 RVLTE----GFHNEGPTWAPNGQYVLFFRDPGG------------QAGGKLYMVDITGRV 419
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ + S+ P+W P
Sbjct: 420 EQPVPTPSYAS-DPSWSP 436
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 25/196 (12%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIM 540
S S E + + D DG + VR LT+ P SP + I + S TG + + ++
Sbjct: 178 SGSKERRRKRLAIMDQDGAN-VRYLTSGEAAVVAPRYSPATQDITYMSQITGQQPRVQVI 236
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ E G + E T +SPDG + SD+D G+ +Y++ +
Sbjct: 237 NLETGARQVIPTKAE---MSTSPRFSPDGRRLVM-SDQDG---GNASIYVMDLASKAQTR 289
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
+ + + P FSPDG+ IVF SD GG +I+ + DGS+ +R
Sbjct: 290 VTNANAID--TSPSFSPDGREIVFESDRGGQQ--------------QIYVMGADGSNPRR 333
Query: 661 LTQNSFEDGTPAWGPR 676
++ PAW PR
Sbjct: 334 ISFGEGSASQPAWSPR 349
>gi|251772667|gb|EES53231.1| putative TolB protein [Leptospirillum ferrodiazotrophum]
Length = 438
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 35/211 (16%)
Query: 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
D R AV + G P S+ +++ + + ++ RLT + NN P+ SP G
Sbjct: 258 DGKRLAVALSRGRP---SQHTQIYLYAFATKHLE------RLTYSRSNNLSPTFSPSGNA 308
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA--SDRDNPG 582
+ F S R G+ +++MD++G +HRLT + WSP G+WIA+ +D P
Sbjct: 309 LAFVSDRDGHPQIFLMDSDGSN---VHRLTFNGSYNVAPAWSPRGDWIAYVCMNDMHRP- 364
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
++ LI P+GT R +I G GR + P +SPDG+ +V+T Q
Sbjct: 365 ----KICLISPDGTS-RVMITQG-PGRDDSPSWSPDGRFLVYT--------------RQI 404
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + ++ KI +DG + L S TP+W
Sbjct: 405 RGHSKLAKIWIDGHGREFLGNYSRSVLTPSW 435
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 51/262 (19%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTS---GGPEFAS 482
RIAF+ ++ ++ DG N R++ F N AF+ W + ++Y + G P+
Sbjct: 173 RIAFIGRTSHGYDLFTMDFDGENTRRMTFDNVLAFNPAWSHNKHHILYVTYLHGEPQ--- 229
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTR---TGYKNLY 538
+ D D V R L + N P+ SPDGK + +R + + +Y
Sbjct: 230 -----------IIDYDLVRGQRHLLFSYPGLNITPTFSPDGKRLAVALSRGRPSQHTQIY 278
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ L RLT ++ +SP G +AF SDRD G +++L+ +G+ +
Sbjct: 279 LYAFATKH---LERLTYSRSNNLSPTFSPSGNALAFVSDRD----GHPQIFLMDSDGSNV 331
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L +GS A P +SP G I + + ++P +I I DG+
Sbjct: 332 HRLTFNGSYNVA--PAWSPRGDWIAY-----------VCMNDMHRP--KICLISPDGTSR 376
Query: 659 KRLTQNSFEDGTPAWGP--RFI 678
+TQ D +P+W P RF+
Sbjct: 377 VMITQGPGRDDSPSWSPDGRFL 398
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH----IELFDLVKNKFIELTRFVSP 368
+R+T + AF PA S + + V +Y H I +DLV+ + L F P
Sbjct: 197 RRMTFDNVLAFNPAWSHNKHHILYV-------TYLHGEPQIIDYDLVRGQRHLL--FSYP 247
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFS 427
+ + P SPD R+ RG R + Q+ L + L ++ R + P+FS
Sbjct: 248 GLN-ITPTFSPDGKRLAVALSRG---RPSQHTQIYLYAFATKHLERLTYSRSNNLSPTFS 303
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFA 481
P G+ +AFV P +++++SDGSN ++ F +++ W P + + Y
Sbjct: 304 PSGNALAFVSDRDGHPQIFLMDSDGSNVHRLTFNGSYNVAPAWSPRGDWIAYVC------ 357
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL--YI 539
+++ I + DG S V G++++ PS SPDG+++V+ G+ L
Sbjct: 358 --MNDMHRPKICLISPDGTSRVMITQGPGRDDS-PSWSPDGRFLVYTRQIRGHSKLAKIW 414
Query: 540 MDAEGGEGYG 549
+D G E G
Sbjct: 415 IDGHGREFLG 424
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG---PEF 480
P+FSP G R+A V + S Q+Y AF+T E + Y+ P F
Sbjct: 253 PTFSPDGKRLA------VALSRGRPSQHTQIYLY-AFAT---KHLERLTYSRSNNLSPTF 302
Query: 481 ASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
+ + + +S I + D DG S V RLT NG N P+ SP G WI +
Sbjct: 303 SPSGNALAFVSDRDGHPQIFLMDSDG-SNVHRLTFNGSYNVAPAWSPRGDWIAYVCMNDM 361
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
++ + + G + +T+GP D +WSPDG ++ +
Sbjct: 362 HRPKICLISPDGTSRVM--ITQGPGRDDSPSWSPDGRFLVY 400
>gi|145219969|ref|YP_001130678.1| WD40 domain-containing protein [Chlorobium phaeovibrioides DSM 265]
gi|145206133|gb|ABP37176.1| WD-40 repeat-containing protein [Chlorobium phaeovibrioides DSM
265]
Length = 442
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 113/260 (43%), Gaps = 40/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVYTSGGP 478
P SP G +A+ ++ P + +++ G RR V N+ W E S
Sbjct: 216 PVLSPDGQHLAYTDYASGRPRLSILDLAGGKRRSVARSGNSIDPGWRSNAEVATTLS--- 272
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
F + +I + D S RR+T + + PS SPDG + F S+RT ++
Sbjct: 273 -FQGDQ---EIYLVRPDG----SLARRVTNSRGIDLSPSFSPDGNKMAFVSSRTSAPQIF 324
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
I+D + G+ RLT +T +WSP G+ IA+++ N G ++ I+ +G+ L
Sbjct: 325 ILDLQTGQ---TKRLTYNGSYNTQPSWSPQGDKIAYSTMEKN---GEINIFTINTDGSSL 378
Query: 599 RKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R+L S R N P +SP G IVFTS Q ++F + G
Sbjct: 379 RQLT---SGSRQNESPSWSPGGDMIVFTSS--------------RQGQKKLFVMNAAGGG 421
Query: 658 LKRLTQNSFEDGTPAWGPRF 677
+RL Q E P+W R
Sbjct: 422 QRRLLQLEGEQMQPSWSLRL 441
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 31/173 (17%)
Query: 413 DISLFRFDGSF-------------PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY 455
+I L R DGS PSFSP G+++AFV P +++++ +++
Sbjct: 278 EIYLVRPDGSLARRVTNSRGIDLSPSFSPDGNKMAFVSSRTSAPQIFILDLQTGQTKRLT 337
Query: 456 FKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513
+ +++T W P + + Y++ ++ E++I +IN D S++R+LT+ + N
Sbjct: 338 YNGSYNTQPSWSPQGDKIAYST-----MEKNGEINIFTINTDG----SSLRQLTSGSRQN 388
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
PS SP G IVF S+R G K L++M+A GG G RL + +WS
Sbjct: 389 ESPSWSPGGDMIVFTSSRQGQKKLFVMNAAGG---GQRRLLQLEGEQMQPSWS 438
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 49/218 (22%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG +R++T P +SPDG+ + + +G L I+D GG+ +
Sbjct: 193 IYMCDYDG-HGMRQMTNTRSLALTPVLSPDGQHLAYTDYASGRPRLSILDLAGGKRRSVA 251
Query: 552 RLTEGPWSDTMCNWSPDGE---WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R G D W + E ++F D+ E+YL+ P+G+ R++ + S G
Sbjct: 252 R--SGNSIDP--GWRSNAEVATTLSFQGDQ--------EIYLVRPDGSLARRV--TNSRG 297
Query: 609 RANHPYFSPDGKSIVFTSDY----------------------GGISAEPISTPH------ 640
P FSPDG + F S G + +P +P
Sbjct: 298 IDLSPSFSPDGNKMAFVSSRTSAPQIFILDLQTGQTKRLTYNGSYNTQPSWSPQGDKIAY 357
Query: 641 -QYQPYGE--IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ GE IF I DGS L++LT S ++ +P+W P
Sbjct: 358 STMEKNGEINIFTINTDGSSLRQLTSGSRQNESPSWSP 395
>gi|347757949|ref|YP_004865511.1| tol-Pal system beta propeller repeat-containing protein TolB
[Micavibrio aeruginosavorus ARL-13]
gi|347590467|gb|AEP09509.1| tol-Pal system beta propeller repeat protein TolB [Micavibrio
aeruginosavorus ARL-13]
Length = 443
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 42/267 (15%)
Query: 420 DGSF----PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVR 468
DGS+ P FSP +A++ + P VY+ N D + R++V + FS + P
Sbjct: 205 DGSYMVLTPRFSPNTQTVAYLAYYNKKPRVYIYNID-TGRQEVLGDFPGMTFSPRFSPDG 263
Query: 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528
V+ + +E+ +I ++++ +RLT N + PS SPDG+ + F
Sbjct: 264 SKVIMS------LAENGNTEIYTMDLKS----RRTQRLTNNAAIDTAPSFSPDGQQVAFE 313
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
S R G + LY+M A GGE R++ G WSP G+ IAF G F +
Sbjct: 314 SDRGGTQQLYVMSANGGEA---KRISFGEGRYASPVWSPRGDLIAFTKLY----KGQFYI 366
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
++ P+G G R + +A P +SP+G+ + F + P+S + +
Sbjct: 367 GVMRPDGQGERIIT---TAYHVEGPSWSPNGRVLTFFKE------SPMSGGGK---TARL 414
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ I + G + +R+ + + PAW P
Sbjct: 415 YTIDITGYN-ERVLKTPSDASDPAWSP 440
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SP+ + + + + +YI + + G L + P +SPDG + +
Sbjct: 213 PRFSPNTQTVAYLAYYNKKPRVYIYNIDTGRQ---EVLGDFPGMTFSPRFSPDGSKVIMS 269
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
+ G+ E+Y + ++L + + A P FSPDG+ + F SD GG
Sbjct: 270 LAEN----GNTEIYTMDLKSRRTQRLTNNAAIDTA--PSFSPDGQQVAFESDRGGTQ--- 320
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+++ + +G + KR++ +P W PR
Sbjct: 321 -----------QLYVMSANGGEAKRISFGEGRYASPVWSPR 350
>gi|384920060|ref|ZP_10020079.1| translocation protein TolB [Citreicella sp. 357]
gi|384466080|gb|EIE50606.1| translocation protein TolB [Citreicella sp. 357]
Length = 481
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA-----FSTVWDPVREAVVYT 474
P FSP GDR+ + + P V+++N GS + Q+ NA F+ + P VVY+
Sbjct: 253 PRFSPNGDRVLYTSYQTGEPRVHILNV-GSVQSQI-LPNASGVMSFAPRFSPDGSKVVYS 310
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
+ S DI +++ A R+LT + PS SPDG IVF S R+G
Sbjct: 311 ------VTTGSNTDIYLMDIAG----GAPRQLTFTPSIDTAPSFSPDGSRIVFESDRSGA 360
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+ LYIM GGE R++ G WSP G+ IAF SG F + ++ +
Sbjct: 361 QQLYIMPVGGGE---PTRISFGQGRYGTPVWSPRGDLIAFTKQL----SGRFHIGVMRTD 413
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ R L S P ++P+G+ I+F+ + G Q ++ + +
Sbjct: 414 GSEERLLTAS---PLDEGPTWAPNGRVIMFSRETLGA-----------QGTSSLYSVDVA 459
Query: 655 GSDLKRL-TQNSFEDGTPAWGP 675
G L R+ T + D PAWGP
Sbjct: 460 GRKLTRVRTPDGGSD--PAWGP 479
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 31/202 (15%)
Query: 480 FASESSEVDIIS--INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + + D DG + V+ LT + P SP+G +++ S +TG +
Sbjct: 216 FVSESGPKDKRAKRLAIMDYDGAN-VQYLTDSRSIVLAPRFSPNGDRVLYTSYQTGEPRV 274
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+I++ + L S M +SPDG + ++ GS + ++YL+
Sbjct: 275 HILNVGSVQSQILPNA-----SGVMSFAPRFSPDGSKVVYSV---TTGSNT-DIYLMDIA 325
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G R+L + S A P FSPDG IVF SD G +++ + +
Sbjct: 326 GGAPRQLTFTPSIDTA--PSFSPDGSRIVFESDRSGAQ--------------QLYIMPVG 369
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
G + R++ GTP W PR
Sbjct: 370 GGEPTRISFGQGRYGTPVWSPR 391
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 295 YKVILPQTGLVSTESVSIQRV-TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFD 353
Y+ P+ +++ SV Q + G+ +F P SP +K + T T S I L D
Sbjct: 267 YQTGEPRVHILNVGSVQSQILPNASGVMSFAPRFSPDGSKVVYSVT---TGSNTDIYLMD 323
Query: 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD 413
+ +LT S T P SPD SR+ + R G+ QL + + P
Sbjct: 324 IAGGAPRQLTFTPSIDTA---PSFSPDGSRIVFESDRSGA------QQLYIMPVGGGEPT 374
Query: 414 -ISLFRFDGSFPSFSPKGDRIAFV-EFPGVY---VVNSDGSNRR 452
IS + P +SP+GD IAF + G + V+ +DGS R
Sbjct: 375 RISFGQGRYGTPVWSPRGDLIAFTKQLSGRFHIGVMRTDGSEER 418
>gi|118574600|sp|Q2LRP7.2|TOLB_SYNAS RecName: Full=Protein TolB; Flags: Precursor
Length = 452
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGG 477
P +SP G +AF + P ++VV+ GS +++ + W P +++ T
Sbjct: 221 PRWSPDGRYLAFSSYRDGKPDIFVVSPSGSGLKKIVSFQGLNLPGAWSPDGRSLLLT--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +I ++V VRRLT N + P SPDG+ I F S +G +
Sbjct: 278 ---LSKDGNEEIYVMDVRS----GQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQI 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+GG+ + RLT +T WSP G IA+ GSG ++++ I +G
Sbjct: 331 YVMNADGGD---VRRLTYSGNYNTTPAWSPRGGKIAYEG---KVGSG-YQIFSIDEDGGN 383
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+R+L + AG P +SPDG+ + F+ GG S I + + +
Sbjct: 384 VRQL--TSGAGDHEFPSWSPDGRFLTFSLRSGGRS--------------RINILNANTLE 427
Query: 658 LKRLTQNSFEDGTPAWGPRF 677
++ L +++ PAW PR
Sbjct: 428 VRTLYESTDRCLGPAWSPRL 447
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G L R+ P WSPDG ++AF+S RD G +++++ P+G+GL+K++
Sbjct: 204 DGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRD----GKPDIFVVSPSGSGLKKIV--- 256
Query: 606 SAGRANHP-YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
S N P +SPDG+S++ T G EI+ + + ++RLT+N
Sbjct: 257 SFQGLNLPGAWSPDGRSLLLTLSKDGNE--------------EIYVMDVRSGQVRRLTRN 302
Query: 665 SFEDGTPAWGP 675
S D +P W P
Sbjct: 303 SAIDVSPVWSP 313
>gi|393769225|ref|ZP_10357753.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. GXF4]
gi|392725466|gb|EIZ82803.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. GXF4]
Length = 448
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 44/261 (16%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSG 476
P +SP IAF+ P V V+N + R+ + ++ S + P +V +
Sbjct: 218 PRYSPATQDIAFMSQATGHQPRVQVINLETGARQALGNVDSMSASPRFSPDGRRLVMS-- 275
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYK 535
+ DI+++++ + + TNG + P+ +PDG I F S R G +
Sbjct: 276 ----VQQGGNADIVTMDI-----ATKAQHSVTNGMAIDTSPTYAPDGSQIAFESDRGGSQ 326
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M G +G HR+T G S + WSP G+ IA+ R+ G F + + P+G
Sbjct: 327 QVYVM---GADGSNPHRITFGAGSASQPAWSPRGDLIAYTRQRN----GGFAICVSKPDG 379
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
TG R L + G N P F+P+G+ ++F D GG Q G++F + +
Sbjct: 380 TGERVLTE----GYHNEGPTFAPNGQYVLFFRDPGG------------QGGGKLFMVDIT 423
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + + S+ P W P
Sbjct: 424 GKVEQPIPTPSYAS-DPTWSP 443
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGL 550
+ V D DG + VR +T+ + P SP + I F S TG++ + +++ E G L
Sbjct: 195 LMVMDQDGAN-VRAITSGETSIVAPRYSPATQDIAFMSQATGHQPRVQVINLETGARQAL 253
Query: 551 HRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ D+M +SPDG + + + G+ ++ + T + + +G A
Sbjct: 254 GNV------DSMSASPRFSPDGRRLVMSVQQ----GGNADIVTMD-IATKAQHSVTNGMA 302
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P ++PDG I F SD GG +++ + DGS+ R+T +
Sbjct: 303 -IDTSPTYAPDGSQIAFESDRGGSQ--------------QVYVMGADGSNPHRITFGAGS 347
Query: 668 DGTPAWGPR 676
PAW PR
Sbjct: 348 ASQPAWSPR 356
>gi|148284009|ref|YP_001248099.1| translocation protein TolB [Orientia tsutsugamushi str. Boryong]
gi|226705886|sp|A5CBX4.1|TOLB_ORITB RecName: Full=Protein TolB; Flags: Precursor
gi|146739448|emb|CAM79084.1| protein precursor [Orientia tsutsugamushi str. Boryong]
Length = 453
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 25/211 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P FSPK ++I +V + P V + + + N + + N FS + P ++ ++
Sbjct: 221 PVFSPKNNQILYVSYHNKIPTVRIHDLNSGNNKILASFNGITFSPRFSPDGNKILVSNSS 280
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + E+++++ +++LT N PS SPDG I F S R+G +
Sbjct: 281 TKNVTHIYEINLLT---------GKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM+ +GG + RLT P + T WSP +IAF +G F + +I +G+
Sbjct: 332 YIMNDQGG---NIKRLTSQPGAYTTPAWSPTNNYIAFTKIE----AGEFSIGVIKLDGSN 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
R + + P ++PDGK+I+F+ Y
Sbjct: 385 KRII---ATKYLVEGPSWAPDGKTIIFSRAY 412
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 30/206 (14%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
+VY S S SS I I + D DG A TNGKN+ P SP I++ S
Sbjct: 182 IVYVS-----ESNSSNRKIRRIAIMDQDG--ANHNYITNGKNHVITPVFSPKNNQILYVS 234
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+ I D G L +S +SPDG I ++ + +E+
Sbjct: 235 YHNKIPTVRIHDLNSGNNKILASFNGITFSP---RFSPDGNKILVSNSSTKNVTHIYEIN 291
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
L+ TG K + G + + P +SPDG I F SD G + +I+
Sbjct: 292 LL----TGKIKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGST--------------QIY 332
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G ++KRLT TPAW P
Sbjct: 333 IMNDQGGNIKRLTSQPGAYTTPAWSP 358
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 107/263 (40%), Gaps = 39/263 (14%)
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
H TP SP NN+ + V+ + R I + NK + ++ +P SPD
Sbjct: 217 HVITPVFSPKNNQILYVSYHNKIPTVR-IHDLNSGNNKILASFNGIT-----FSPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--- 437
+++ + LL IK S+ + PS+SP G +IAFV
Sbjct: 271 GNKILVSNSSTKNVTHIYEINLLTGKIKQLTKGQSI----NTSPSYSPDGSKIAFVSDRS 326
Query: 438 -FPGVYVVNSDGSNRRQVYFK-NAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINV 494
+Y++N G N +++ + A++T W P + +T E+ E I I +
Sbjct: 327 GSTQIYIMNDQGGNIKRLTSQPGAYTTPAWSPTNNYIAFT------KIEAGEFSIGVIKL 380
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-------RSTRTGYKNLYIMDAEGGEG 547
D + + G PS +PDGK I+F +ST T K LY +D G
Sbjct: 381 DGSNKRIIATKYLVEG-----PSWAPDGKTIIFSRAYKATKSTSTKVK-LYSVDYTGYN- 433
Query: 548 YGLHRLTEGPWSDTMCNWSPDGE 570
R + P + + NWS + E
Sbjct: 434 ---EREIQTPENASDPNWSNEYE 453
>gi|254564124|ref|YP_003071219.1| protein tolB [Methylobacterium extorquens DM4]
gi|254271402|emb|CAX27415.1| protein tolB precursor [Methylobacterium extorquens DM4]
Length = 446
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 44/261 (16%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P +SP G IAF+ + P V +++ + R+ V + + S + P +V +
Sbjct: 216 PRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKRQTVGNFASMSASPRFSPDGRRLVMS-- 273
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYK 535
+ DI+++++ S + T G + PS +PDG IVF S R G +
Sbjct: 274 ----VQQGGNADIVTVDL-----ASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQ 324
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M G +G RL+ G S + WSP G+ IAF R G F + ++ P+G
Sbjct: 325 QIYVM---GADGSNPRRLSFGEGSASQPAWSPRGDLIAFTRQR----KGGFAICVMKPDG 377
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L + G N P F+P+G+ ++F D GG Q G+++ + +
Sbjct: 378 SGERVLTE----GFHNESPTFAPNGQYVMFFRDPGG------------QGGGKLYMVDIT 421
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + + SF P W P
Sbjct: 422 GKVEQPVPTPSFAS-DPTWSP 441
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG 549
+ V D DG + VR LT G + P SP G+ I F + G + + ++D E G+
Sbjct: 192 LMVMDQDGAN-VRALTGGGDVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGK--- 247
Query: 550 LHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R T G ++ + +SPDG + + + G+ ++ + + Q +
Sbjct: 248 --RQTVGNFASMSASPRFSPDGRRLVMSVQQ----GGNADIVTVDLASKAQTPVTQGLAI 301
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P ++PDG IVF SD GG +I+ + DGS+ +RL+
Sbjct: 302 --DTSPSYAPDGSQIVFESDRGGSQ--------------QIYVMGADGSNPRRLSFGEGS 345
Query: 668 DGTPAWGPR 676
PAW PR
Sbjct: 346 ASQPAWSPR 354
>gi|91776691|ref|YP_546447.1| TolB-like protein [Methylobacillus flagellatus KT]
gi|91710678|gb|ABE50606.1| TolB-like protein [Methylobacillus flagellatus KT]
Length = 415
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G + V +SDG N + V + S VW P + Y S F +
Sbjct: 152 RIAYVSKSGGRYALQVADSDGYNPQTVVSSAEPIISPVWSPDGTKLAYVS----FEKKKP 207
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ + S+ VS R + N K NN+ P+ SPDGK + T +Y ++A+G
Sbjct: 208 IIYVQSL-------VSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHAANSQIYSINADG 260
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GL +LT DT WSPDG +I F SDR GS ++Y + +G ++
Sbjct: 261 ---TGLQQLTRTTAIDTEPTWSPDGRYIYFTSDR----GGSPQIYRMPSSGGEASRMTFE 313
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG----------------ISAEPISTPHQYQPYGEI 648
GS P SPDGKS+ + GG +S P + P G +
Sbjct: 314 GS--YVVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVLSDGPKDESPSFAPNGRM 371
Query: 649 F-------------KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG +RL+++ + PAWGP
Sbjct: 372 LLHATRVGGRGALAAVSADGRVKQRLSESGGDVREPAWGP 411
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 37/262 (14%)
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP 424
VS ++P SPD +++ Y + Q L+ ++ L + F+ + S P
Sbjct: 178 VVSSAEPIISPVWSPDGTKLAYVSFE--KKKPIIYVQSLVSGQRTVLAN---FKGNNSAP 232
Query: 425 SFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS--- 475
++SP G R+A V +Y +N+DG+ +Q+ A T W P + +TS
Sbjct: 233 AWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDRG 292
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G P+ S S R+T G P +SPDGK + + G
Sbjct: 293 GSPQIYRMPSSGGEAS-------------RMTFEGSYVVSPRLSPDGKSLAYIRRDGGQF 339
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+ + D + G+ + L++GP D +++P+G + A+ G+ + + +G
Sbjct: 340 RVALQDLQTGQ---VQVLSDGP-KDESPSFAPNGRMLLHATRVGGRGA----LAAVSADG 391
Query: 596 TGLRKLIQSGSAGRANHPYFSP 617
++L +SG G P + P
Sbjct: 392 RVKQRLSESG--GDVREPAWGP 411
>gi|365891497|ref|ZP_09429910.1| Protein tolB precursor [Bradyrhizobium sp. STM 3809]
gi|365332539|emb|CCE02441.1| Protein tolB precursor [Bradyrhizobium sp. STM 3809]
Length = 376
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 28/217 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 149 PRFSPSSQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 205
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + P SPDG I F S R G +
Sbjct: 206 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPCYSPDGSQICFESDRGGKPQI 258
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 259 YVMSANGGNA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 311
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISA 633
R L +AG N P FSP+G+ ++F D GG +
Sbjct: 312 ERIL----TAGFHNEGPTFSPNGRVLMFFRDPGGTAG 344
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 112 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSSQEITYMEFGQGDPRV 170
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 171 YLFNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRS 223
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG I F SD GG +P +I+ + +G +
Sbjct: 224 TTRLTDTPAI--DTSPCYSPDGSQICFESDRGG------------KP--QIYVMSANGGN 267
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 268 AQRISFGEGSYSTPVWSPR 286
>gi|218780986|ref|YP_002432304.1| hypothetical protein Dalk_3146 [Desulfatibacillum alkenivorans
AK-01]
gi|218762370|gb|ACL04836.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans
AK-01]
Length = 442
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 38/257 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST-VWDPVREAVVYTSGGP 478
P++S G +A+V + P +++ N +V +K T WDP R A+ T
Sbjct: 214 PAWSGDGTHMAYVSYADGPPEIFIRNLAQKRGVKVAYKGINVTPAWDPTRFALAAT---- 269
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
S + + +I S+ + +++LT N + PS SPDGK + F S R G +Y
Sbjct: 270 --LSLNGDQEIYSLTGNG----KIIKKLTNNWGIDVSPSYSPDGKRMAFVSNRGGSPQIY 323
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
IM+ + G+ R+T ++ +SP G+ IA+ D G+F+++ + +GT L
Sbjct: 324 IMELDTGQ---TSRVTFDGKYNSAPAFSPRGDRIAYCGMVD----GTFDVFTVRTDGTDL 376
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
++L + G P +SPDG I F++ G + + T H G+D
Sbjct: 377 QRL--TDHPGDDEEPSWSPDGTLIAFSTTREGKAKIYVMTSH--------------GTDQ 420
Query: 659 KRLTQNSFEDGTPAWGP 675
++L + PAW P
Sbjct: 421 RKLLELEGAQTQPAWSP 437
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 63/221 (28%)
Query: 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
E++ L N I + + + ++P SPD R+ + RGGS Q+ + + +
Sbjct: 277 EIYSLTGNGKI-IKKLTNNWGIDVSPSYSPDGKRMAFVSNRGGSP------QIYIMELDT 329
Query: 410 PLPDISLFRFDGSF---PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDP 466
S FDG + P+FSP+GDRIA Y DG+
Sbjct: 330 G--QTSRVTFDGKYNSAPAFSPRGDRIA-------YCGMVDGT----------------- 363
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
D+ ++ D D ++RLT + ++ PS SPDG I
Sbjct: 364 --------------------FDVFTVRTDGTD----LQRLTDHPGDDEEPSWSPDGTLIA 399
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
F +TR G +Y+M + G + +L E + T WSP
Sbjct: 400 FSTTREGKAKIYVMTSHGTD---QRKLLELEGAQTQPAWSP 437
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
++LT+ K P+ S DG + + S G ++I + + G+ +G
Sbjct: 202 QQLTSGSKIALSPAWSGDGTHMAYVSYADGPPEIFIRNL--AQKRGVKVAYKG------I 253
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
N +P + FA +G E+Y + NG ++KL + + G P +SPDGK +
Sbjct: 254 NVTPAWDPTRFALAATLSLNGDQEIYSLTGNGKIIKKL--TNNWGIDVSPSYSPDGKRMA 311
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
F S+ GG +P +I+ ++LD R+T + + PA+ PR
Sbjct: 312 FVSNRGG-------SP-------QIYIMELDTGQTSRVTFDGKYNSAPAFSPR 350
>gi|118574585|sp|Q1GYT1.2|TOLB_METFK RecName: Full=Protein TolB; Flags: Precursor
Length = 433
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G + V +SDG N + V + S VW P + Y S F +
Sbjct: 170 RIAYVSKSGGRYALQVADSDGYNPQTVVSSAEPIISPVWSPDGTKLAYVS----FEKKKP 225
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ + S+ VS R + N K NN+ P+ SPDGK + T +Y ++A+G
Sbjct: 226 IIYVQSL-------VSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHAANSQIYSINADG 278
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GL +LT DT WSPDG +I F SDR GS ++Y + +G ++
Sbjct: 279 ---TGLQQLTRTTAIDTEPTWSPDGRYIYFTSDR----GGSPQIYRMPSSGGEASRMTFE 331
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG----------------ISAEPISTPHQYQPYGEI 648
GS P SPDGKS+ + GG +S P + P G +
Sbjct: 332 GS--YVVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVLSDGPKDESPSFAPNGRM 389
Query: 649 F-------------KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG +RL+++ + PAWGP
Sbjct: 390 LLHATRVGGRGALAAVSADGRVKQRLSESGGDVREPAWGP 429
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPS 425
VS ++P SPD +++ Y + Q L+ ++ L + F+ + S P+
Sbjct: 197 VSSAEPIISPVWSPDGTKLAYVSFE--KKKPIIYVQSLVSGQRTVLAN---FKGNNSAPA 251
Query: 426 FSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---G 476
+SP G R+A V +Y +N+DG+ +Q+ A T W P + +TS G
Sbjct: 252 WSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDRGG 311
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
P+ S S R+T G P +SPDGK + + G
Sbjct: 312 SPQIYRMPSSGGEAS-------------RMTFEGSYVVSPRLSPDGKSLAYIRRDGGQFR 358
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+ + D + G+ + L++GP D +++P+G + A+ G+ + + +G
Sbjct: 359 VALQDLQTGQ---VQVLSDGP-KDESPSFAPNGRMLLHATRVGGRGA----LAAVSADGR 410
Query: 597 GLRKLIQSGSAGRANHPYFSP 617
++L +SG G P + P
Sbjct: 411 VKQRLSESG--GDVREPAWGP 429
>gi|310816577|ref|YP_003964541.1| translocation protein TolB precursor [Ketogulonicigenium vulgare
Y25]
gi|385234189|ref|YP_005795531.1| translocation protein TolB [Ketogulonicigenium vulgare WSH-001]
gi|308755312|gb|ADO43241.1| translocation protein TolB precursor [Ketogulonicigenium vulgare
Y25]
gi|343463100|gb|AEM41535.1| Translocation protein TolB [Ketogulonicigenium vulgare WSH-001]
Length = 442
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP G +I + + P + +++ ++ RQ+ + AFS + +V+Y+
Sbjct: 213 PRFSPTGAQILYTSYQSGAPRINLLDVASASARQLPTEVGEMAFSPRFSRDGGSVIYS-- 270
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI ++ RLT PS+SPDG IVF S R+G
Sbjct: 271 ----LANGGNTDIYRTDIR----TGGHTRLTNAPSIETSPSLSPDGSQIVFESDRSGTTQ 322
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF + G F + ++ +G+
Sbjct: 323 LYVMGANGGEA---RRISFGDGRYGTPVWSPRGDMIAFTKQQ----GGRFHIGVMRTDGS 375
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P ++P+G+ ++FT + G + P I+ + + G
Sbjct: 376 EERLLT---SSFLDEGPTWAPNGRMLMFTRETQGETGGP-----------SIYSVDISGR 421
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+L+++ SF P+WGP
Sbjct: 422 NLRQVATGSFAS-DPSWGP 439
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F +ES D + + + D DG + V+ LT P SP G I++ S ++G +
Sbjct: 176 FVAESGPKDNRLKRVAIMDYDGAN-VQYLTDANSLVLAPRFSPTGAQILYTSYQSGAPRI 234
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
++D L TE +S DG + ++ G+ ++Y G
Sbjct: 235 NLLDVASASARQLP--TEVGEMAFSPRFSRDGGSVIYSL----ANGGNTDIYRTDIRTGG 288
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + S P SPDG IVF SD G + +++ + +G +
Sbjct: 289 HTRLTNAPSI--ETSPSLSPDGSQIVFESDRSGTT--------------QLYVMGANGGE 332
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ GTP W PR
Sbjct: 333 ARRISFGDGRYGTPVWSPR 351
>gi|134095584|ref|YP_001100659.1| TolB periplasmic protein [Herminiimonas arsenicoxydans]
gi|133739487|emb|CAL62538.1| Protein TolB precursor [Herminiimonas arsenicoxydans]
Length = 423
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 36/256 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P++SP G ++A+V F P VY+ D +R++ N + A ++ G
Sbjct: 197 PAWSPDGTKVAYVSFENKKPVVYI--QDLVSRKRTVAAN-----FKGSNSAPSWSPDGSR 249
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A S + + V + DG + RRL+ + + P S DG+ I F S R+G +Y
Sbjct: 250 LAVALSRDGLTQVYVVNADGTNP-RRLSNSNGIDTEPQYSADGQSIYFTSDRSGGPQIYK 308
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M + GGE R+T + SPDG+++A+ S R+ G F+++++ N +
Sbjct: 309 MGSNGGEA---RRVTFAGSYNISPRISPDGKFLAYISRRE----GKFQLFILDLNNGQEQ 361
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
+L + P FSP+GK +++ ++ G G + + +DG +
Sbjct: 362 RL---SDTVKDESPSFSPNGKYLMYATESG--------------RRGTLAVVSVDGQVKQ 404
Query: 660 RLTQNSFEDGTPAWGP 675
RLT S + P WGP
Sbjct: 405 RLTTQSGDIREPTWGP 420
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 33/221 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGD 431
++P SPD ++V Y E+ + ++++ S ++ F+ S PS+SP G
Sbjct: 195 ISPAWSPDGTKVAYVSF------ENKKPVVYIQDLVSRKRTVAANFKGSNSAPSWSPDGS 248
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A VYVVN+DG+N R++ N T + +++ +TS GGP+
Sbjct: 249 RLAVALSRDGLTQVYVVNADGTNPRRLSNSNGIDTEPQYSADGQSIYFTSDRSGGPQIYK 308
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S +G A RR+T G N P +SPDGK++ + S R G L+I+D
Sbjct: 309 MGS------------NGGEA-RRVTFAGSYNISPRISPDGKFLAYISRREGKFQLFILDL 355
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
G+ RL++ D ++SP+G+++ +A++ G+
Sbjct: 356 NNGQE---QRLSD-TVKDESPSFSPNGKYLMYATESGRRGT 392
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 126/315 (40%), Gaps = 69/315 (21%)
Query: 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---------RFDG 421
H ++ I D R GY K T N+Q+ L + KS D + RFD
Sbjct: 52 HQVSAIIKADLLRSGYFKVIDTGTVLTENSQVNLADWKSRGADALVVGSVSRLPDGRFDV 111
Query: 422 SFPSFSPKGDRIAFVEFPGVYVVN------------SDGSNRRQVYFKNAFSTVWDPVRE 469
+ F D I + + + N +D + + AF+T R
Sbjct: 112 KYRLF----DTIKQAQLSSLALANQPQFIRVSAHKIADDIYEKLTGIRGAFAT-----RI 162
Query: 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
A V T G EF E + D DG L +N + P+ SPDG + + S
Sbjct: 163 AYV-TKAGKEFRLE----------IADSDGEGTQVALRSN-EPIISPAWSPDGTKVAYVS 210
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
+YI D R + S++ +WSPDG +A A RD G +
Sbjct: 211 FENKKPVVYIQDL-----VSRKRTVAANFKGSNSAPSWSPDGSRLAVALSRD----GLTQ 261
Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
+Y+++ +GT R+L S S G P +S DG+SI FTSD G P +
Sbjct: 262 VYVVNADGTNPRRL--SNSNGIDTEPQYSADGQSIYFTSDRSG-------GP-------Q 305
Query: 648 IFKIKLDGSDLKRLT 662
I+K+ +G + +R+T
Sbjct: 306 IYKMGSNGGEARRVT 320
>gi|346991827|ref|ZP_08859899.1| translocation protein TolB [Ruegeria sp. TW15]
Length = 439
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P +YV++ R+++ + +FS + P ++VY+
Sbjct: 210 PRFSPTGDRLLYTSYETGQPRIYVLDVGRVKRQELPTQEGTMSFSPRFSPDGRSIVYS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ +++ V RLT PS SPDG IVF S R+G
Sbjct: 268 ----LTQGGNTDLWKMDLASGQSV----RLTNTPAIETAPSYSPDGGQIVFESDRSGTPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 320 LYIMPANGGEA---TRISFGQGRYGTPVWSPRGDLIAFTKQN----KGRFHIGVMRTDGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGAGGR-----------STLYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + T + D P+WGP
Sbjct: 419 NLRPVRTPDGGSD--PSWGP 436
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 92/240 (38%), Gaps = 66/240 (27%)
Query: 480 FASESSEVDI--ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP G +++ S TG +
Sbjct: 173 FVSESGPKDQRRKRLAIMDYDGAN-VQYLTDSAAIVLAPRFSPTGDRLLYTSYETGQPRI 231
Query: 538 YIMDA-----------EGGEGYGLH-------------------------------RLTE 555
Y++D EG + RLT
Sbjct: 232 YVLDVGRVKRQELPTQEGTMSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQSVRLTN 291
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +T ++SPDG I F SDR SG+ ++Y++ NG ++ S GR P +
Sbjct: 292 TPAIETAPSYSPDGGQIVFESDR----SGTPQLYIMPANGGEATRI--SFGQGRYGTPVW 345
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP G I FT Q + I ++ DGS+ +RL SF D P W P
Sbjct: 346 SPRGDLIAFT--------------KQNKGRFHIGVMRTDGSE-ERLLTASFLDEGPTWSP 390
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 40/255 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVA--TRRPTSSYRHIELFDLVKNKFIE 361
++ + ++Q +T P SP ++ + + T +P I + D+ + K E
Sbjct: 189 IMDYDGANVQYLTDSAAIVLAPRFSPTGDRLLYTSYETGQP-----RIYVLDVGRVKRQE 243
Query: 362 LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFR 418
L T +P SPD + Y +GG+T + D + + +P + +
Sbjct: 244 LP--TQEGTMSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQSVRLTNTPAIETA--- 298
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAVV 472
PS+SP G +I F P +Y++ ++G ++ F + + T VW P + +
Sbjct: 299 -----PSYSPDGGQIVFESDRSGTPQLYIMPANGGEATRISFGQGRYGTPVWSPRGDLIA 353
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTR 531
+T I V DG + RL T + P+ SP+G+ I+F R T+
Sbjct: 354 FT---------KQNKGRFHIGVMRTDG--SEERLLTASFLDEGPTWSPNGRVIMFTRETQ 402
Query: 532 --TGYKNLYIMDAEG 544
G LY +D G
Sbjct: 403 GAGGRSTLYSVDISG 417
>gi|91978608|ref|YP_571267.1| translocation protein TolB [Rhodopseudomonas palustris BisB5]
gi|91685064|gb|ABE41366.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris BisB5]
Length = 449
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 222 PRFSPSTQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMSFAPRFSPDGQRIIMS--- 278
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + PS SPD I F S R G +
Sbjct: 279 ---LQQGGNSNLFVMDLRS----KTTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 332 YIMPAGGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 384
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +A P ++ + + G
Sbjct: 385 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLYTVDVSGR 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 429 NELRVPTPGYAS-DPAWSP 446
>gi|456352847|dbj|BAM87292.1| TolB protein [Agromonas oligotrophica S58]
Length = 441
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 214 PRFSPSSQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 270
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + P SPDG + F S R G +
Sbjct: 271 ---LQQGGNSNLFVMDLRS----RTTTRLTDTPAIDTSPCYSPDGSQLCFESDRGGKPQI 323
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 324 YVMSASGGSA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 376
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L +AG N P FSP+G+ ++F D GG + ++ I + G
Sbjct: 377 ERIL----TAGFHNEGPTFSPNGRVLMFFRDPGGTAGP------------SLYSIDVSGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+++ F PAW P
Sbjct: 421 FEQKVPTPGFAS-DPAWSP 438
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 177 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSSQEITYMEFGQGDPRV 235
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 236 YLFNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRT 288
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG + F SD GG +P +I+ + G
Sbjct: 289 TTRLTDTPAID--TSPCYSPDGSQLCFESDRGG------------KP--QIYVMSASGGS 332
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 333 AQRISFGEGSYSTPVWSPR 351
>gi|442323279|ref|YP_007363300.1| tolB protein [Myxococcus stipitatus DSM 14675]
gi|441490921|gb|AGC47616.1| tolB protein [Myxococcus stipitatus DSM 14675]
Length = 430
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 132/331 (39%), Gaps = 70/331 (21%)
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS- 422
R H SP SR+ Y R+ GNN+ DI++ +DG
Sbjct: 146 RLADALYRHFTREPSPFLSRITY-------VRKAGNNR-----------DIAVADWDGGN 187
Query: 423 -----------FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV 471
PS S G ++A+ + NR +Y + V +
Sbjct: 188 PVVLTKGGINILPSLSNDGAQVAYTSYR---------KNRPDLYVQRPGGDAKMVVSDGQ 238
Query: 472 VYTSG-----GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
+ T G G A +E + I V + DG A T N PS SPDGK I
Sbjct: 239 MITGGAFSPDGKRLAYSQAEGESAQIYVANADGSGAKAVTDTPYGLNTSPSWSPDGKRIA 298
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSG 584
F S R G +YIM G +G G+ RLT +G ++ T +WSP G+ I F A D N
Sbjct: 299 FVSNRGGSPQIYIM---GADGSGVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN---- 350
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
+F+++ ++ + ++ Q G P FSP+G+ I+FTS G +
Sbjct: 351 AFDLFTVNVETGKVTRMTQ--DQGNNEEPAFSPNGRLILFTSTRAGGT------------ 396
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++F + DG++ L TP W P
Sbjct: 397 --QLFVMTADGNNQLPLRAEKGTLLTPDWAP 425
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 27/203 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I V D DG + V + T G N PS+S DG + + S R +LY+ GG+ +
Sbjct: 178 IAVADWDGGNPV--VLTKGGINILPSLSNDGAQVAYTSYRKNRPDLYVQ-RPGGDAKMV- 233
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+++G T +SPDG+ +A++ S ++Y+ + +G+G K + G
Sbjct: 234 -VSDGQMI-TGGAFSPDGKRLAYSQAEGE----SAQIYVANADGSGA-KAVTDTPYGLNT 286
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK I F S+ GG +P +I+ + DGS ++RLT + TP
Sbjct: 287 SPSWSPDGKRIAFVSNRGG-------SP-------QIYIMGADGSGVRRLTFQGNYNQTP 332
Query: 672 AWGPRFIRPVDVEEVKNEQCAFE 694
W PR + V ++E+ AF+
Sbjct: 333 DWSPR--GDLIVFTARDERNAFD 353
>gi|307944545|ref|ZP_07659885.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp.
TrichSKD4]
gi|307772294|gb|EFO31515.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp.
TrichSKD4]
Length = 449
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++N + R V + F+ + P ++VV +
Sbjct: 221 PRFSPTSQEITYMSYSGADPSVYLLNIETGQREIVGNFPGMTFAPRFSPDGQSVVMS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I +++ RLT + PS SPDG IVF S R G + L
Sbjct: 278 ---LQQGGNANIFKMDLRS----RRTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGTQQL 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G L R++ GP + WSP G+ IAF G F + ++ P+G G
Sbjct: 331 YVM--SGNDGNPL-RISFGPGRYSTPVWSPRGDLIAFTKMH----QGRFMIGVMKPDGKG 383
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P +SP+G+ +VF D G + P +++ + L G
Sbjct: 384 ERILTE----GYHNEGPAWSPNGRVLVFFRDTPGANGGP-----------QVWTVDLTGY 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ +F P+W P
Sbjct: 429 NEQRVNTPAFAS-DPSWSP 446
>gi|407712210|ref|YP_006832775.1| TolB protein [Burkholderia phenoliruptrix BR3459a]
gi|407234394|gb|AFT84593.1| TolB protein [Burkholderia phenoliruptrix BR3459a]
Length = 430
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 154/384 (40%), Gaps = 86/384 (22%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + P+ SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSSIDTEPTFSPDGQTIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A+G R+T +T SPDG+ +A+ S G+F++Y+
Sbjct: 308 PQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGAFKLYIQDLQ 363
Query: 595 G---TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
G TGL S P F+ +G+ I++ + G G + +
Sbjct: 364 GGTATGLTDTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAV 403
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ P+WGP
Sbjct: 404 STDGRTRQVLSVQGGSVREPSWGP 427
>gi|117923781|ref|YP_864398.1| TolB domain-containing protein [Magnetococcus marinus MC-1]
gi|117607537|gb|ABK42992.1| TolB, N-terminal domain protein [Magnetococcus marinus MC-1]
Length = 450
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNR--RQVYFKNAFSTVWDP--VREAVVYTS 475
P FSP G+++ ++ + P +Y+ + R R Y + W P R A+ +
Sbjct: 221 PRFSPNGEQLLYISYESSEPRIYLWDLYTGKRVKRSNYPGLNSTPAWSPDGNRMALTLSK 280
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G +SE+ +I + +++RLT N + PS SPDG+ +VF S R G
Sbjct: 281 DG------NSEIYVIDMRN------QSLQRLTYNAAIDTSPSWSPDGRRMVFTSDRAGTP 328
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LYIMDA+G + + RLT+ S T +WS G+ IAF G G F + +I P G
Sbjct: 329 QLYIMDADGSD---VRRLTQRGQSSTAPSWSNRGDKIAFVRG----GGGKFRIAVIDPTG 381
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
+ L S P +SP+G+ I+F+ G S
Sbjct: 382 RDEQLLTDSWM---DESPTWSPNGRVILFSRQQQGSS 415
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 26/187 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+++ D DG + + L G+N+ P SP+G+ +++ S + +Y+ D G+
Sbjct: 196 LSMMDADGANRMD-LKVKGRNDLVLTPRFSPNGEQLLYISYESSEPRIYLWDLYTGKRV- 253
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ + P ++ WSPDG +A +D G+ E+Y+I L++L + +A
Sbjct: 254 --KRSNYPGLNSTPAWSPDGNRMALTLSKD----GNSEIYVIDMRNQSLQRL--TYNAAI 305
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P +SPDG+ +VFTSD G TP +++ + DGSD++RLTQ
Sbjct: 306 DTSPSWSPDGRRMVFTSDRAG-------TP-------QLYIMDADGSDVRRLTQRGQSST 351
Query: 670 TPAWGPR 676
P+W R
Sbjct: 352 APSWSNR 358
>gi|284030771|ref|YP_003380702.1| WD40 domain-containing protein beta Propeller [Kribbella flavida
DSM 17836]
gi|283810064|gb|ADB31903.1| WD40 domain protein beta Propeller [Kribbella flavida DSM 17836]
Length = 1043
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 29/174 (16%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
+R T N +VSP+G+ + F +++ A GG RLT+ T
Sbjct: 54 QRATLTEGTNFMVAVSPEGRRLAFDLV----TAIWVTPATGGSA---QRLTDDLQDATRP 106
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--PYFSPDGKS 621
WSPDG + F S RD G+F ++ I P+G LR+L + GR +H P+F+PDG+S
Sbjct: 107 RWSPDGRRLVFQSYRD----GNFHLWTIQPDGRSLRQL----TTGRHDHREPHFTPDGRS 158
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
IVF+SD GG + YG I ++ L + LT++ E+ P P
Sbjct: 159 IVFSSDRGGNGS-----------YG-IHRLDLSTGAIVALTEDPAEEAEPVVSP 200
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
+ +I V G SA +RLT + ++ P SPDG+ +VF+S R G +L+ + +G
Sbjct: 80 VTAIWVTPATGGSA-QRLTDDLQDATRPRWSPDGRRLVFQSYRDGNFHLWTIQPDG---R 135
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
L +LT G +++PDG I F+SDR G+GS+ ++ + + + L +
Sbjct: 136 SLRQLTTGRHDHREPHFTPDGRSIVFSSDRG--GNGSYGIHRLDLSTGAIVALTED--PA 191
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ----------------YQPYGEIFKIK 652
P SPDG+ I FT D I ++T + Y P G++ ++
Sbjct: 192 EEAEPVVSPDGRRIAFTVDTAAIVELDLATGVRRTVVAAQTGITVFGPAYSPSGQLAHVR 251
Query: 653 LDG 655
L G
Sbjct: 252 LSG 254
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 31/166 (18%)
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
K A P+VSPDG+W+ FR+ L++ +G ++ + ++ ++SPDG
Sbjct: 334 KGIASPTVSPDGRWLSFRA----LNALWLAPTDGRARP--RKIVADGYFNSDPDFSPDGR 387
Query: 571 WIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ +ASDRD G+ +++L NGT + S G P FSPDG+ + + D
Sbjct: 388 SLLYASDRD----GTADLWLHDLANGTDTKV---SSLPGAQTAPRFSPDGRQVAY-QDQD 439
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GI+ + + L +++LT F+ G +W P
Sbjct: 440 GIA----------------WMLDLGSGQVRQLTPTLFQPGRVSWSP 469
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482
+ SP+G R+AF ++V + G + +++ ++A W P +V+ S
Sbjct: 67 AVSPEGRRLAFDLVTAIWVTPATGGSAQRLTDDLQDATRPRWSPDGRRLVFQS------Y 120
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ +I D ++R+LTT ++ P +PDG+ IVF S R
Sbjct: 121 RDGNFHLWTIQPDG----RSLRQLTTGRHDHREPHFTPDGRSIVFSSDR----------- 165
Query: 543 EGGEG-YGLHR----------LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
GG G YG+HR LTE P + SPDG IAF D + E+ L
Sbjct: 166 -GGNGSYGIHRLDLSTGAIVALTEDPAEEAEPVVSPDGRRIAFTVDT----AAIVELDL- 219
Query: 592 HPNGTGLRKLIQSGSAG-RANHPYFSPDGK 620
TG+R+ + + G P +SP G+
Sbjct: 220 ---ATGVRRTVVAAQTGITVFGPAYSPSGQ 246
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
DG + R++ +G N+ P SPDG+ +++ S R G +L++ D G + L P
Sbjct: 362 DGRARPRKIVADGYFNSDPDFSPDGRSLLYASDRDGTADLWLHDLANGTDTKVSSL---P 418
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPG----SGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613
+ T +SPDG +A+ D+D GS ++ + P L Q G
Sbjct: 419 GAQTAPRFSPDGRQVAY-QDQDGIAWMLDLGSGQVRQLTPT------LFQPGRVS----- 466
Query: 614 YFSPDGKSIVFTS 626
+SPDG++IV +
Sbjct: 467 -WSPDGRTIVLAA 478
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 155/394 (39%), Gaps = 58/394 (14%)
Query: 156 LDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPY- 214
LDL+ G ++++ + P E ++ T T AA+ +L TG+ R +
Sbjct: 176 LDLS--TGAIVALTEDPAEEAEPVVSPDGRRIAFTVDT--AAIVELDLATGVRRTVVAAQ 231
Query: 215 -GVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPC 273
G+ F PA SPSG+ V G +++ D + +D V V P
Sbjct: 232 TGITVFGPAYSPSGQLAHVRLSGPA-----CDLVIGDAKVTSGQD----VFAVP----PS 278
Query: 274 WVDESTLFFHRKSEEDDWISVYKV-----ILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
W + LF+ D + ++V +P T +V V+ +R P + +
Sbjct: 279 WASATELFY----TADGRVMKHRVGGGSEPVPFTAVVP---VTSRRPRPKVPDVESSRSR 331
Query: 329 PGNNKFIAVATRRPTS---SYRHIELFDLV-KNKFIELTRFVSPKTHHLNPFISPDSSRV 384
P K IA T P S+R + L + + V+ + +P SPD +
Sbjct: 332 P--VKGIASPTVSPDGRWLSFRALNALWLAPTDGRARPRKIVADGYFNSDPDFSPDGRSL 389
Query: 385 GYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--FPSFSPKGDRIAFVEFPGVY 442
Y R DG L L ++ + D + G+ P FSP G ++A+ + G+
Sbjct: 390 LYASDR------DGTADLWLHDLANGT-DTKVSSLPGAQTAPRFSPDGRQVAYQDQDGIA 442
Query: 443 VVNSDGSNRRQVYFKNAFS---TVWDPVREAVVYTSGGP------EFASESSEVDIISIN 493
+ GS + + F W P +V + P E S+ VD+ S +
Sbjct: 443 WMLDLGSGQVRQLTPTLFQPGRVSWSPDGRTIVLAAVKPFTKRFREGTSQLLYVDVASTS 502
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
+ V+ + R L T G + P SPDG+W+ F
Sbjct: 503 FEYVEPMP-FRSLATRGDDG--PVFSPDGRWLAF 533
>gi|329113830|ref|ZP_08242601.1| Protein TolB [Acetobacter pomorum DM001]
gi|326696840|gb|EGE48510.1| Protein TolB [Acetobacter pomorum DM001]
Length = 454
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 45/259 (17%)
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
FIS R G+ + R +DG N +L K ++L P FSP D+IAF
Sbjct: 185 FISRSGPR-GHQRTRLAVMDQDGANARMLTTGKW----LTLT------PRFSPVKDQIAF 233
Query: 436 VEF----PGVYVVNSDGSNRRQVY--FKN-AFSTVWDPVREAVVYT---SGGPEFASESS 485
+ + P VY+ + S R+Q+ F+ +F+ + P +VV + +GG S+
Sbjct: 234 MSYANNRPRVYLFDLT-SGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGG----SDLY 288
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
VD+ S + R++T++G + P SPDG IVF S R G +YIM A GG
Sbjct: 289 VVDLAS---------GSRRQITSSGAIDTSPCFSPDGSQIVFNSDRGGSPQIYIMPASGG 339
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G R++ G + WSP G+ IAF G F + ++ P+GTG R + Q
Sbjct: 340 ---GARRISYGQGTYGSPVWSPRGDLIAFT----RIAGGMFSLGVMAPDGTGERIMTQGF 392
Query: 606 SAGRANHPYFSPDGKSIVF 624
+ P F P+G+ + +
Sbjct: 393 T---VESPSFCPNGRVLAY 408
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 432 RIAFVEFPG--------VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFA 481
RIAF+ G + V++ DG+N R + + + PV++ + + S +A
Sbjct: 182 RIAFISRSGPRGHQRTRLAVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMS----YA 237
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
+ V + D S +++ + +F P SPDG+ +V TR G +LY++
Sbjct: 238 NNRPRVYLF-------DLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYVV 290
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
D G ++T DT +SPDG I F SDR GS ++Y++ +G G R+
Sbjct: 291 DLASGS---RRQITSSGAIDTSPCFSPDGSQIVFNSDR----GGSPQIYIMPASGGGARR 343
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ S G P +SP G I FT GG+ + + P
Sbjct: 344 I--SYGQGTYGSPVWSPRGDLIAFTRIAGGMFSLGVMAP 380
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R LTT P SP I F S +Y+ D G
Sbjct: 199 LAVMDQDGANA-RMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPRVYLFDLTSGR---QQ 254
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L E +SPDG + + R+ G ++Y++ R++ SG+
Sbjct: 255 ILGEFEGISFAPRFSPDGRSVVLSVTRN----GGSDLYVVDLASGSRRQITSSGAI--DT 308
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG IVF SD GG +P +I+ + G +R++ G+P
Sbjct: 309 SPCFSPDGSQIVFNSDRGG-------SP-------QIYIMPASGGGARRISYGQGTYGSP 354
Query: 672 AWGPR 676
W PR
Sbjct: 355 VWSPR 359
>gi|254294750|ref|YP_003060773.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Hirschia baltica ATCC 49814]
gi|254043281|gb|ACT60076.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica
ATCC 49814]
Length = 454
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-------GEGYGLHRLTEGP 557
RLT N + PS SPDGK IVF S R G LYIM+A+G G + R+T G
Sbjct: 295 RLTNNLAIDTSPSYSPDGKEIVFTSDRGGSPQLYIMNADGSDRNCENGPRNKVCRITFGQ 354
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
S + WSP G+ IAF G FE+ +I +GTG R L S P +SP
Sbjct: 355 GSYSTPVWSPRGDLIAFTKQ----SKGRFEIGVIKTDGTGERSLT---SDYLVEGPTWSP 407
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
+G+ I+F + G P ++ I L G +LKR+ T+ D PAW P
Sbjct: 408 NGRVIIFFKEARG--GRP-----------SLWSIDLSGRNLKRVPTRGDASD--PAWSP 451
>gi|441168659|ref|ZP_20969059.1| hypothetical protein SRIM_33931 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440615564|gb|ELQ78749.1| hypothetical protein SRIM_33931 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 363
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 66/290 (22%)
Query: 424 PSFSPKGDRIAFVEFPGVY-----------VVNSDGSNRRQVYFKNAFSTVWDPVREAVV 472
P+F+P G + F F G Y + + DG + R A + D A V
Sbjct: 73 PAFAPDGKSLLFTVFHGGYNEGAAALRVLPLAHRDGRDSR-----TAVRDLLDEHDRAAV 127
Query: 473 YTSG-------GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGK 523
G G FAS+ + D I + + R+T + N+ + PS SPDGK
Sbjct: 128 NLPGSSWRPSAGVTFASDRAGKDEIWV----LRPGGRPERVTEHPGNSGYLEPSFSPDGK 183
Query: 524 WIVFRST--------------RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT---MCNWS 566
WIVF+ + R+ +L+ + +G E RL GP S T NWS
Sbjct: 184 WIVFQESVEREDPDEKAALADRSALGSLWKVRRDGTE---QTRLVNGPASRTDNREPNWS 240
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
P G+ + F R GS ++ +Y+++ +G+G+RKL AG +SPDG+S+VF+S
Sbjct: 241 PRGDRLVF--QRRELGSDAWALYVMNADGSGVRKLTTV--AGEHTDASWSPDGRSVVFSS 296
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN-SFEDGTPAWGP 675
GG++ +IF + + G ++T++ DG P+W P
Sbjct: 297 TTGGLALP------------KIFVMPVSGGAPVQVTRDPGTYDGAPSWSP 334
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS--GGPEFA 481
PSFSP G I F E V D + + ++A ++W R+ T GP
Sbjct: 176 PSFSPDGKWIVFQE----SVEREDPDEKAALADRSALGSLWKVRRDGTEQTRLVNGPASR 231
Query: 482 SESSE------------------VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
+++ E D ++ V + DG S VR+LTT + S SPDG+
Sbjct: 232 TDNREPNWSPRGDRLVFQRRELGSDAWALYVMNADG-SGVRKLTTVAGEHTDASWSPDGR 290
Query: 524 WIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDRDN 580
+VF ST G +++M GG ++T P + D +WSPDG WIAF S +
Sbjct: 291 SVVFSSTTGGLALPKIFVMPVSGGAPV---QVTRDPGTYDGAPSWSPDGRWIAFES---H 344
Query: 581 PGS 583
PGS
Sbjct: 345 PGS 347
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP------GVYVVNSDG 448
R DG Q L N + R D P++SP+GDR+ F +YV+N+DG
Sbjct: 215 RRDGTEQTRLVNGPA-------SRTDNREPNWSPRGDRLVFQRRELGSDAWALYVMNADG 267
Query: 449 SNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
S R++ T W P +VV F+S + + + I V V G + V+
Sbjct: 268 SGVRKLTTVAGEHTDASWSPDGRSVV-------FSSTTGGLALPKIFVMPVSGGAPVQVT 320
Query: 507 TTNGKNNAFPSVSPDGKWIVFRS 529
G + PS SPDG+WI F S
Sbjct: 321 RDPGTYDGAPSWSPDGRWIAFES 343
>gi|365858779|ref|ZP_09398687.1| Tol-Pal system beta propeller repeat protein TolB [Acetobacteraceae
bacterium AT-5844]
gi|363713624|gb|EHL97221.1| Tol-Pal system beta propeller repeat protein TolB [Acetobacteraceae
bacterium AT-5844]
Length = 456
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P F P +IAF+ + P V++ N D S R++V + S + P +VV +S
Sbjct: 222 PRFHPNARQIAFMSYANNQPRVFLFNLD-SGRQEVLGNFQGMTLSPRFSPDGRSVVLSS- 279
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + +I +++ R+LT+ G + P SPDG IVF S R G +
Sbjct: 280 -----TRGGDANIFVVDL----ASRRERQLTSGGGLDVSPCYSPDGTQIVFNSDRGGDQQ 330
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+MDA GG G R++ G WSP G+ IAF G F + ++ P+G+
Sbjct: 331 LYVMDANGG---GARRISFGNGRYATPVWSPRGDLIAFT----RMSGGRFAIGVMRPDGS 383
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF 624
G R L + + P F+P+G+ + F
Sbjct: 384 GERILSE---GWQMESPSFAPNGRVLTF 408
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG+ +V STR G N++++D +LT G D +SPDG I F
Sbjct: 266 PRFSPDGRSVVLSSTRGGDANIFVVDLASRRE---RQLTSGGGLDVSPCYSPDGTQIVFN 322
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
SDR G ++Y++ NG G R++ S GR P +SP G I FT GG A
Sbjct: 323 SDR----GGDQQLYVMDANGGGARRI--SFGNGRYATPVWSPRGDLIAFTRMSGGRFAIG 376
Query: 636 ISTP 639
+ P
Sbjct: 377 VMRP 380
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 42/263 (15%)
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFS------TVWDPVREAVVYTSGGPE-- 479
P+GDR + +EF ++ VNS+ + Y NA + + D + E ++ G +
Sbjct: 125 PQGDR-SRIEFR-LWEVNSEQQLQGTAYTANAANWRQIAHVISDVIYERMLGEKGYFDTR 182
Query: 480 --FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ +ES D + + +D R T+G A P P+ + I F S
Sbjct: 183 IVYIAESGPRDRRTRRLAIMDQDGENNRFLTDGNAQALSPRFHPNARQIAFMSYANNQPR 242
Query: 537 LYIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+++ + + G L +T P +SPDG + +S R G ++++
Sbjct: 243 VFLFNLDSGRQEVLGNFQGMTLSP------RFSPDGRSVVLSSTR----GGDANIFVVDL 292
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
R+L G G P +SPDG IVF SD GG +++ +
Sbjct: 293 ASRRERQLTSGG--GLDVSPCYSPDGTQIVFNSDRGGDQ--------------QLYVMDA 336
Query: 654 DGSDLKRLTQNSFEDGTPAWGPR 676
+G +R++ + TP W PR
Sbjct: 337 NGGGARRISFGNGRYATPVWSPR 359
>gi|307728551|ref|YP_003905775.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1003]
gi|307583086|gb|ADN56484.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1003]
Length = 430
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 153/384 (39%), Gaps = 86/384 (22%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRIVVADQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + P+ SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSSIDTEPTFSPDGQTIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 308 PQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQ 363
Query: 595 G---TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
G TGL S P F+ +G+ I++ + G G + +
Sbjct: 364 GGTATGLTDTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAV 403
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ P+WGP
Sbjct: 404 STDGRTRQVLSVQGGSVREPSWGP 427
>gi|421849003|ref|ZP_16281988.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus NBRC 101655]
gi|421852945|ref|ZP_16285627.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371460272|dbj|GAB27191.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus NBRC 101655]
gi|371478796|dbj|GAB30830.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 454
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 45/259 (17%)
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
FIS R G+ + R +DG N +L K ++L P FSP D+IAF
Sbjct: 185 FISRSGPR-GHQRTRLAVMDQDGANARMLTTGKW----LTLT------PRFSPVKDQIAF 233
Query: 436 VEF----PGVYVVNSDGSNRRQVY--FKN-AFSTVWDPVREAVVYT---SGGPEFASESS 485
+ + P VY+ + S R+Q+ F+ +F+ + P +VV + +GG S+
Sbjct: 234 MSYANNRPRVYLFDLT-SGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGG----SDLY 288
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
VD+ S + R++T++G + P SPDG IVF S R G +YIM A GG
Sbjct: 289 IVDLAS---------GSRRQITSSGAIDTSPCFSPDGSQIVFNSDRGGSPQIYIMPASGG 339
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G R++ G + WSP G+ IAF G F + ++ P+GTG R + Q
Sbjct: 340 ---GARRISYGQGTYGSPVWSPRGDLIAFT----RIAGGMFSLGVMAPDGTGERIMTQGF 392
Query: 606 SAGRANHPYFSPDGKSIVF 624
+ P F P+G+ + +
Sbjct: 393 T---VESPSFCPNGRVLAY 408
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 432 RIAFVEFPG--------VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFA 481
RIAF+ G + V++ DG+N R + + + PV++ + + S +A
Sbjct: 182 RIAFISRSGPRGHQRTRLAVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMS----YA 237
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
+ V + D S +++ + +F P SPDG+ +V TR G +LYI+
Sbjct: 238 NNRPRVYLF-------DLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYIV 290
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
D G ++T DT +SPDG I F SDR GS ++Y++ +G G R+
Sbjct: 291 DLASGS---RRQITSSGAIDTSPCFSPDGSQIVFNSDR----GGSPQIYIMPASGGGARR 343
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ S G P +SP G I FT GG+ + + P
Sbjct: 344 I--SYGQGTYGSPVWSPRGDLIAFTRIAGGMFSLGVMAP 380
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R LTT P SP I F S +Y+ D G
Sbjct: 199 LAVMDQDGANA-RMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPRVYLFDLTSGR---QQ 254
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L E +SPDG + + R+ G ++Y++ R++ SG+
Sbjct: 255 ILGEFEGISFAPRFSPDGRSVVLSVTRN----GGSDLYIVDLASGSRRQITSSGAI--DT 308
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG IVF SD GG +P +I+ + G +R++ G+P
Sbjct: 309 SPCFSPDGSQIVFNSDRGG-------SP-------QIYIMPASGGGARRISYGQGTYGSP 354
Query: 672 AWGPR 676
W PR
Sbjct: 355 VWSPR 359
>gi|258543663|ref|YP_003189096.1| translocation protein TolB [Acetobacter pasteurianus IFO 3283-01]
gi|384043581|ref|YP_005482325.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-12]
gi|384052098|ref|YP_005479161.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-03]
gi|384055207|ref|YP_005488301.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-07]
gi|384058440|ref|YP_005491107.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-22]
gi|384061081|ref|YP_005500209.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-26]
gi|384064373|ref|YP_005485015.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-32]
gi|384120386|ref|YP_005503010.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256634741|dbj|BAI00717.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01]
gi|256637797|dbj|BAI03766.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-03]
gi|256640851|dbj|BAI06813.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-07]
gi|256643906|dbj|BAI09861.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-22]
gi|256646961|dbj|BAI12909.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-26]
gi|256650014|dbj|BAI15955.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-32]
gi|256653004|dbj|BAI18938.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656058|dbj|BAI21985.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-12]
Length = 454
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 45/259 (17%)
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
FIS R G+ + R +DG N +L K ++L P FSP D+IAF
Sbjct: 185 FISRSGPR-GHQRTRLAVMDQDGANARMLTTGKW----LTLT------PRFSPVKDQIAF 233
Query: 436 VEF----PGVYVVNSDGSNRRQVY--FKN-AFSTVWDPVREAVVYT---SGGPEFASESS 485
+ + P VY+ + S R+Q+ F+ +F+ + P +VV + +GG S+
Sbjct: 234 MSYANNRPRVYLFDLT-SGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGG----SDLY 288
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
VD+ S + R++T++G + P SPDG IVF S R G +YIM A GG
Sbjct: 289 IVDLAS---------GSRRQITSSGAIDTSPCFSPDGSQIVFNSDRGGSPQIYIMPASGG 339
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G R++ G + WSP G+ IAF G F + ++ P+GTG R + Q
Sbjct: 340 ---GARRISYGQGTYGSPVWSPRGDLIAFT----RIAGGMFSLGVMAPDGTGERIMTQGF 392
Query: 606 SAGRANHPYFSPDGKSIVF 624
+ P F P+G+ + +
Sbjct: 393 T---VESPSFCPNGRVLAY 408
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 432 RIAFVEFPG--------VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFA 481
RIAF+ G + V++ DG+N R + + + PV++ + + S +A
Sbjct: 182 RIAFISRSGPRGHQRTRLAVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMS----YA 237
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
+ V + D S +++ + +F P SPDG+ +V TR G +LYI+
Sbjct: 238 NNRPRVYLF-------DLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYIV 290
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
D G ++T DT +SPDG I F SDR GS ++Y++ +G G R+
Sbjct: 291 DLASGS---RRQITSSGAIDTSPCFSPDGSQIVFNSDR----GGSPQIYIMPASGGGARR 343
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ S G P +SP G I FT GG+ + + P
Sbjct: 344 I--SYGQGTYGSPVWSPRGDLIAFTRIAGGMFSLGVMAP 380
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R LTT P SP I F S +Y+ D G
Sbjct: 199 LAVMDQDGANA-RMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPRVYLFDLTSGR---QQ 254
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L E +SPDG + + R+ G ++Y++ R++ SG+
Sbjct: 255 ILGEFEGISFAPRFSPDGRSVVLSVTRN----GGSDLYIVDLASGSRRQITSSGAI--DT 308
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG IVF SD GG +P +I+ + G +R++ G+P
Sbjct: 309 SPCFSPDGSQIVFNSDRGG-------SP-------QIYIMPASGGGARRISYGQGTYGSP 354
Query: 672 AWGPR 676
W PR
Sbjct: 355 VWSPR 359
>gi|317033773|ref|XP_001395414.2| hypothetical protein ANI_1_1672104 [Aspergillus niger CBS 513.88]
Length = 688
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 137/583 (23%), Positives = 222/583 (38%), Gaps = 120/583 (20%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT---------PYG 215
S++D +LS G+ L YVST N T ++ +L +G + LT +
Sbjct: 147 SVEDIGVLSPNGKTLAYVSTQGNYTT------NIWVKDLASGQAQNLTDTASNRADNTWP 200
Query: 216 VADFSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGG 270
F P+ SP G++ +S N W DG + + ++ R DG+ ++ G
Sbjct: 201 TGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEG 260
Query: 271 WPCWV-----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325
+ D + ++ + ED + + Q V+ + S+ T + A T
Sbjct: 261 YSLGTPQFSPDGKRIIYNNMTTEDTYGC--HGVSAQQEAVTAQIYSVDFATGSNVIAHTS 318
Query: 326 ATSP-------GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378
+ P GN+ I + H D F T+ +P+ S
Sbjct: 319 GSYPKVGQHYIGNSTNIGYLIKAGDYEGIHYTKPDFTHRSF--------NLTNMRDPWWS 370
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--------FPSFSPKG 430
PD S++ Y + N ++ L+ +D FP +
Sbjct: 371 PDGSKLVY----------------WVPNWTQQAAELKLWSYDTEWEYRYMDVFPMHNTVI 414
Query: 431 DRIA------------FVEFPGVYVVNSDGSNRRQVYF--------------KNAFSTVW 464
+RIA V VY D + +Y AF W
Sbjct: 415 NRIASTQKVLGSANGSLVHSSPVYTDVVDALDSYDIYNISNSTEVEWLEEGNSGAFQPSW 474
Query: 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
+P +V + G F S ++ I +G LT N+ FPS SPDG
Sbjct: 475 NPDGTELV-SGFGAWFVSRTTNTAKIYHAF--ANGTWHTN-LTDGSDNSGFPSWSPDGSA 530
Query: 525 IVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
IV+R + L+I++ G+ H+LT+G W D WSPDGE I F R+N
Sbjct: 531 IVYRKWSLATEAPLGLHILNFTTGK---THQLTDG-W-DNTPGWSPDGERIVFT--RNNN 583
Query: 582 GSGS---------FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
+ S F++Y I P+G+ L ++ S S H +S DG+ I+++S G
Sbjct: 584 WTESYGARWYADRFDIYTIRPDGSELTRVTDSLS--NDAHAVWSQDGR-IMWSSGQYGFK 640
Query: 633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E +QPYG+I + DG++ +T +ED P + P
Sbjct: 641 DESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMP 683
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 53/217 (24%)
Query: 441 VYVVNSDGSNRRQVYFK--NAFST--VWDPVREAVVYTSG--GPEFASESSEVDIISINV 494
+++ NSDG+N Q+ NAF W E +V+TS GP + D+ + V
Sbjct: 81 LWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGP------GQSDLYRVRV 134
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL 553
D S + L +SP+GK + + ST+ Y N+++ D G+ L
Sbjct: 135 DG----SGLETLAATDSVEDIGVLSPNGKTLAYVSTQGNYTTNIWVKDLASGQAQNL--- 187
Query: 554 TEGPWSDTMCN--------------WSPDGEWIAFASDRDNPGSG-----------SFEM 588
+DT N WSPDGEWI F+SDR+ +G + +
Sbjct: 188 -----TDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGV 242
Query: 589 YLIHPNGTGLRKLI-QSGSAGRANHPYFSPDGKSIVF 624
Y + P+G+ R +I Q G + P FSPDGK I++
Sbjct: 243 YAVRPDGSDFRTVIRQEGYS--LGTPQFSPDGKRIIY 277
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 15/96 (15%)
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F +R P G ++++ + +GT +L+ + S HP +S DG+ IVFTS+ G
Sbjct: 69 FYMNRIGPSGG--QLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRG--- 123
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQ-NSFED 668
P Q +++++++DGS L+ L +S ED
Sbjct: 124 -----PGQ----SDLYRVRVDGSGLETLAATDSVED 150
>gi|414163907|ref|ZP_11420154.1| protein tolB [Afipia felis ATCC 53690]
gi|410881687|gb|EKS29527.1| protein tolB [Afipia felis ATCC 53690]
Length = 447
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 47/261 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYT--S 475
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 222 PRFSPSTQEITYMEFGGGDPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQRIIMSLQQ 281
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
GG +S + ++ + + RLT + PS +PDG I F S R G
Sbjct: 282 GG------NSNLYVMDLRS------KSTTRLTDTPAIDTSPSYAPDGSRICFESDRGGKP 329
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G
Sbjct: 330 QIYVMGAGGGAA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDG 382
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L ++G N P F+P+G+ ++F D G A P +F + +
Sbjct: 383 SGERIL----TSGFHNEGPTFAPNGRVVMFFRDLG---AGP-----------NLFTVDIS 424
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 425 GRNELKVPTPGFAS-DPAWSP 444
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES ++ + + + D DG + VR LT P SP + I + G +
Sbjct: 185 FVDESGPAQRRVKRLAMMDQDGAN-VRYLTRGADLVLTPRFSPSTQEITYMEFGGGDPRV 243
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ +Y++
Sbjct: 244 YLFNVETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLYVMDLRSKS 296
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P ++PDG I F SD GG +P +I+ + G
Sbjct: 297 TTRLTDTPAI--DTSPSYAPDGSRICFESDRGG---KP-----------QIYVMGAGGGA 340
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 341 AQRI---SFGDGSYSTPVWSPR 359
>gi|294678712|ref|YP_003579327.1| TolB protein [Rhodobacter capsulatus SB 1003]
gi|294477532|gb|ADE86920.1| TolB protein [Rhodobacter capsulatus SB 1003]
Length = 437
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPGVY-------VVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
P FSP+GDRI + F + V N+ G +V FS + P ++VY+
Sbjct: 208 PRFSPQGDRILYTTFETGFPRIKMMSVGNAAGKLLPEVPGTMTFSPRFSPDGGSIVYS-- 265
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ ++V +V RLT + PS SPDG IVF S R+G +
Sbjct: 266 ----LEQNGNTDLYRMSVSG----GSVERLTNSPAIETAPSYSPDGSQIVFESDRSGTQQ 317
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 318 IYVMSASGGEPV---RISNGDGRYGTPVWSPRGDLIAFTKQS----GGRFFIGVMRTDGS 370
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G + ++F + + G
Sbjct: 371 EERDLTAS---YLDEGPTWAPNGRVLMFTRESPGAAGG-----------AKMFTVDITGR 416
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK + P WGP
Sbjct: 417 NLKAVAGVGGAS-DPTWGP 434
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V LT + P SP G I++ + TG+ + +M G
Sbjct: 185 LAIMDYDGEN-VNYLTDSSTIVLAPRFSPQGDRILYTTFETGFPRIKMMSVGNAAG---K 240
Query: 552 RLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L E P + T +SPDG I ++ +++ G+ ++Y + +G + +L S + A
Sbjct: 241 LLPEVPGTMTFSPRFSPDGGSIVYSLEQN----GNTDLYRMSVSGGSVERLTNSPAIETA 296
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF SD G +I+ + G + R++ GT
Sbjct: 297 --PSYSPDGSQIVFESDRSGTQ--------------QIYVMSASGGEPVRISNGDGRYGT 340
Query: 671 PAWGPR 676
P W PR
Sbjct: 341 PVWSPR 346
>gi|381166008|ref|ZP_09875226.1| Protein tolB precursor [Phaeospirillum molischianum DSM 120]
gi|380684740|emb|CCG40038.1| Protein tolB precursor [Phaeospirillum molischianum DSM 120]
Length = 448
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 40/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY+ N D R + + F+ + P V+++
Sbjct: 216 PRFSPSAREITYLSYFRGVPRVYIFNLDTGRREALGNFPGMTFAPRFSPDGNKVIFS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+E +I +N+ V RLT N + PS +PDG IVF S R G + L
Sbjct: 273 ---MAEDGNTEIYEMNLMTRSKV----RLTNNPAIDTAPSYAPDGSQIVFESDRGGGQQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M GG G +R++ G WSP G+ IAF + G F + ++ P+G+G
Sbjct: 326 YVMGVGGG---GANRISFGDGRYATPVWSPRGDLIAFTKQK----GGRFFIGVMRPDGSG 378
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE---IFKIKLD 654
R L + P ++P+G+ + F D +P + G+ ++ I L
Sbjct: 379 ERLLAE---GFLVEGPTWAPNGRVLAFWRD----------SPSDERGRGQSVRLYTIDLT 425
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + +R+ + PAW P
Sbjct: 426 GVN-ERVMITPVDGSDPAWSP 445
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + R LT G+ P SP + I + S G +YI + + G L
Sbjct: 193 LAIMDQDGENH-RFLTEGGELVLTPRFSPSAREITYLSYFRGVPRVYIFNLDTGRREALG 251
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG + F+ D G+ E+Y ++ +L + + A
Sbjct: 252 NF---PGMTFAPRFSPDGNKVIFSMAED----GNTEIYEMNLMTRSKVRLTNNPAIDTA- 303
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P ++PDG IVF SD GG +++ + + G R+ SF DG
Sbjct: 304 -PSYAPDGSQIVFESDRGGGQ--------------QLYVMGVGGGGANRI---SFGDGRY 345
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 346 ATPVWSPR 353
>gi|194333584|ref|YP_002015444.1| WD40 domain-containing protein beta Propeller [Prosthecochloris
aestuarii DSM 271]
gi|194311402|gb|ACF45797.1| WD40 domain protein beta Propeller [Prosthecochloris aestuarii DSM
271]
Length = 441
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 27/238 (11%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
++VT G A TP+ SP ++ +A T + +++ DL K + + + K
Sbjct: 204 KQVTSTGGMALTPSLSP-DSGLLAYLTY--SGGLPDLQIKDLATQKTVSVMK----KGVK 256
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
++P S R G +C + E +++ S ++ R PSFSP G +
Sbjct: 257 IDP-----SWRNGTLECATTFSFEGDQEIYMVDRNGSVGRRLTRSRGIDVSPSFSPDGRK 311
Query: 433 IAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSE 486
+AFV P V++ + ++ F ++T W PV + + +TS ++ E
Sbjct: 312 MAFVSSRHGSPQVFIKDLSSGRESRLTFSGKYNTQPAWSPVDDKIAFTS-----MQKNGE 366
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
++I +IN D S +R+LT + N P SPDG IVF STR G + L++M+A G
Sbjct: 367 INIFTINADG----SGLRQLTYRARQNEAPGWSPDGSMIVFSSTRDGSRKLFMMNANG 420
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 134/315 (42%), Gaps = 44/315 (13%)
Query: 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395
V RR ++ +E++D++ K + L + S K L +G+ C
Sbjct: 119 GVMERRGSTINMAMEVYDVLTGKLM-LKKLYSGKRDDLRS--------IGHRFCADLMEL 169
Query: 396 EDG-----NNQLLLENIKSPLPDISLFRFDGS-------------FPSFSPKGDRIAFVE 437
G +++L ++ +I L FDG PS SP +A++
Sbjct: 170 ITGKPSVFDSRLAFVSLNGGKKEIFLSEFDGYGAKQVTSTGGMALTPSLSPDSGLLAYLT 229
Query: 438 FPGVY--VVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
+ G + D + ++ V S + V+ + +G E A+ S I +
Sbjct: 230 YSGGLPDLQIKDLATQKTV------SVMKKGVKIDPSWRNGTLECATTFSFEGDQEIYMV 283
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D +G S RRLT + + PS SPDG+ + F S+R G ++I D G RLT
Sbjct: 284 DRNG-SVGRRLTRSRGIDVSPSFSPDGRKMAFVSSRHGSPQVFIKDLSSGRE---SRLTF 339
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
+T WSP + IAF S + N G ++ I+ +G+GLR+L A P +
Sbjct: 340 SGKYNTQPAWSPVDDKIAFTSMQKN---GEINIFTINADGSGLRQLTYRARQNEA--PGW 394
Query: 616 SPDGKSIVFTSDYGG 630
SPDG IVF+S G
Sbjct: 395 SPDGSMIVFSSTRDG 409
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y++D G G RLT D ++SPDG +AF S R GS ++++
Sbjct: 276 GDQEIYMVDRNGSVG---RRLTRSRGIDVSPSFSPDGRKMAFVSSRH----GSPQVFIKD 328
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI--FK 650
+ +L SG P +SP I FTS Q GEI F
Sbjct: 329 LSSGRESRLTFSGKYN--TQPAWSPVDDKIAFTS---------------MQKNGEINIFT 371
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
I DGS L++LT + ++ P W P
Sbjct: 372 INADGSGLRQLTYRARQNEAPGWSP 396
>gi|167648382|ref|YP_001686045.1| translocation protein TolB [Caulobacter sp. K31]
gi|167350812|gb|ABZ73547.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter sp.
K31]
Length = 441
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 24/160 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG + F + G ++Y+MD + R+T P DT ++SPDG I F
Sbjct: 259 PRFSPDGGKVAFSVEKGGNSDIYVMDLRSRQS---TRITTDPAIDTSPSFSPDGSKIVFN 315
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
SDR G ++Y+++ +G+G+R++ G GR P +SP G I FT GG
Sbjct: 316 SDR----GGQAQLYIMNADGSGVRRISYGG--GRYTTPVWSPRGDFIAFTKQTGG----- 364
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ I +K+DG D +RL S+ D P W P
Sbjct: 365 -----EFH----IGVMKVDGGD-ERLLTTSYLDEGPTWAP 394
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
R+TT+ + PS SPDG IVF S R G LYIM+A+G G+ R++ G T
Sbjct: 292 RITTDPAIDTSPSFSPDGSKIVFNSDRGGQAQLYIMNADGS---GVRRISYGGGRYTTPV 348
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSP G++IAF G F + ++ +G R L S P ++P+G+ ++F
Sbjct: 349 WSPRGDFIAFTKQT----GGEFHIGVMKVDGGDERLLTTS---YLDEGPTWAPNGRVLMF 401
Query: 625 TSD 627
+ +
Sbjct: 402 SRE 404
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 102/275 (37%), Gaps = 89/275 (32%)
Query: 360 IELTRFVSPKTHHLNPF--------ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-- 409
I LT + +T + F SPD +V + +GG N+ + + +++S
Sbjct: 236 IYLTNLETARTETIGKFPGMVFAPRFSPDGGKVAFSVEKGG------NSDIYVMDLRSRQ 289
Query: 410 -------PLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST 462
P D S PSFSP G +I F NSD + Q+Y NA
Sbjct: 290 STRITTDPAIDTS--------PSFSPDGSKIVF---------NSDRGGQAQLYIMNA--- 329
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
DG S VRR++ G P SP G
Sbjct: 330 -----------------------------------DG-SGVRRISYGGGRYTTPVWSPRG 353
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+I F G ++ +M +GG+ RL + D W+P+G + F+ +
Sbjct: 354 DFIAFTKQTGGEFHIGVMKVDGGD----ERLLTTSYLDEGPTWAPNGRVLMFSREGS--- 406
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
SG+ ++ + G LR +G+ A+ P +SP
Sbjct: 407 SGNSRLWTVDITGRILRPAAYTGA---ASDPAWSP 438
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
++ V+RL ++ A P DG +IV R + T + Y+ G L L E
Sbjct: 186 LTRVKRLAIMDQDGANPQYLTDGSYIVMTPRFSSTSQEITYMALRPTGSSIYLTNL-ETA 244
Query: 558 WSDTMCNW---------SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
++T+ + SPDG +AF+ ++ G+ ++Y++ ++ +
Sbjct: 245 RTETIGKFPGMVFAPRFSPDGGKVAFSVEK----GGNSDIYVMDLRSRQSTRITTDPAID 300
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P FSPDG IVF SD GG +++ + DGS ++R++
Sbjct: 301 --TSPSFSPDGSKIVFNSDRGG--------------QAQLYIMNADGSGVRRISYGGGRY 344
Query: 669 GTPAWGPR 676
TP W PR
Sbjct: 345 TTPVWSPR 352
>gi|350637375|gb|EHA25732.1| hypothetical protein ASPNIDRAFT_50375 [Aspergillus niger ATCC 1015]
Length = 688
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 137/583 (23%), Positives = 222/583 (38%), Gaps = 120/583 (20%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT---------PYG 215
S++D +LS G+ L YVST N T ++ +L +G + LT +
Sbjct: 147 SVEDIGVLSPNGKTLAYVSTQGNYTT------NIWVKDLASGQAQNLTDTASNRADNTWP 200
Query: 216 VADFSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGG 270
F P+ SP G++ +S N W DG + + ++ R DG+ ++ G
Sbjct: 201 TGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEG 260
Query: 271 WPCWV-----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325
+ D + ++ + ED + + Q V+ + S+ T + A T
Sbjct: 261 YSLGTPQFSPDGKRIIYNNMTTEDTYGC--HGVSAQQEAVTAQIYSVDFATGSNVIAHTS 318
Query: 326 ATSP-------GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378
+ P GN+ I + H D F T+ +P+ S
Sbjct: 319 GSYPKVGQHYIGNSTNIGYLIKAGDYEGIHYTKPDFTHRSF--------NLTNMRDPWWS 370
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--------FPSFSPKG 430
PD S++ Y + N ++ L+ +D FP +
Sbjct: 371 PDGSKLVY----------------WVPNWTQQAAELKLWSYDTEWEYRYMDVFPMHNTVV 414
Query: 431 DRIA------------FVEFPGVYVVNSDGSNRRQVYF--------------KNAFSTVW 464
+RIA V VY D + +Y AF W
Sbjct: 415 NRIASTQKVLGSANGSLVHSSPVYTDVVDALDSYDIYNISNSTEVEWLEEGNSGAFQPSW 474
Query: 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
+P +V + G F S ++ I +G LT N+ FPS SPDG
Sbjct: 475 NPDGTELV-SGFGAWFVSRTTNTAKIYRAF--ANGTWHTN-LTDGSDNSGFPSWSPDGSA 530
Query: 525 IVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
IV+R + L+I++ G+ H+LT+G W D WSPDGE I F R+N
Sbjct: 531 IVYRKWSLATEAPLGLHILNFTTGK---THQLTDG-W-DNTPGWSPDGERIVFT--RNNN 583
Query: 582 GSGS---------FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
+ S F++Y I P+G+ L ++ S S H +S DG+ I+++S G
Sbjct: 584 WTESYGARWYADRFDIYTIRPDGSELTRVTDSLS--NDAHAVWSQDGR-IMWSSGQYGFK 640
Query: 633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E +QPYG+I + DG++ +T +ED P + P
Sbjct: 641 DESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMP 683
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 105/234 (44%), Gaps = 60/234 (25%)
Query: 441 VYVVNSDGSNRRQVYFK--NAFST--VWDPVREAVVYTSG--GPEFASESSEVDIISINV 494
+++ NSDG+N Q+ NAF W E +V+TS GP + D+ + V
Sbjct: 81 LWISNSDGTNATQLMGNQSNAFDYHPTWSSDGEWIVFTSERRGP------GQSDLYRVRV 134
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL 553
D S + L +SP+GK + + ST+ Y N+++ D G+ L
Sbjct: 135 DG----SGLETLAATDSVEDIGVLSPNGKTLAYVSTQGNYTTNIWVKDLASGQAQNL--- 187
Query: 554 TEGPWSDTMCN--------------WSPDGEWIAFASDRDNPGSG-----------SFEM 588
+DT N WSPDGEWI F+SDR+ +G + +
Sbjct: 188 -----TDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGV 242
Query: 589 YLIHPNGTGLRKLI-QSGSAGRANHPYFSPDGKSIVF----TSD-YG--GISAE 634
Y + P+G+ R +I Q G + P FSPDGK I++ T D YG G+SA+
Sbjct: 243 YAVRPDGSDFRTVIRQEGYS--LGTPQFSPDGKRIIYNNMTTEDTYGCHGVSAQ 294
>gi|453330643|dbj|GAC87389.1| translocation protein TolB [Gluconobacter thailandicus NBRC 3255]
Length = 454
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYV--VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
P F+P D++AF+ + P VY+ + S G + +F+ + P VV +
Sbjct: 221 PRFNPARDQVAFMSYANNRPRVYLFDLGSGGQQMLGEFDGISFAPRFSPDGSRVVLS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
A+ DI V D+ S + ++ G + P SPDG IVF S R G L
Sbjct: 278 ---ATRGGGSDIF---VVDLASRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDRGGSPQL 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG G R++ G WSP G+ IAF G G F + +++P+GTG
Sbjct: 332 YIMSASGG---GARRISYGSGQYGSPVWSPRGDLIAFT----RIGHGGFSLGVMNPDGTG 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 385 ERILTQGFT---VESPTFCPNGRVLAF 408
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 489 IISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG ++ R+ T G+ P +P + F S +Y+ D G
Sbjct: 195 ITRLALMDQDGFNS--RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSG-- 250
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
G L E +SPDG + ++ R G GS +++++ ++ SG A
Sbjct: 251 -GQQMLGEFDGISFAPRFSPDGSRVVLSATR---GGGS-DIFVVDLASRSKHQITSSGGA 305
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P FSPDG IVF SD GG +P +++ + G +R++ S +
Sbjct: 306 -IDTSPCFSPDGSQIVFNSDRGG-------SP-------QLYIMSASGGGARRISYGSGQ 350
Query: 668 DGTPAWGPR 676
G+P W PR
Sbjct: 351 YGSPVWSPR 359
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 323 FTPATSPGNNK--FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
TP +P ++ F++ A RP + LFDL L F P SPD
Sbjct: 219 LTPRFNPARDQVAFMSYANNRP-----RVYLFDLGSGGQQMLGEF---DGISFAPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI--SLFRFDGSFPSFSPKGDRIAFVE- 437
SRV RGG G++ +++ I S D S P FSP G +I F
Sbjct: 271 GSRVVLSATRGG-----GSDIFVVDLASRSKHQITSSGGAIDTS-PCFSPDGSQIVFNSD 324
Query: 438 ---FPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
P +Y++++ G R++ + + S VW P + + +T G S+
Sbjct: 325 RGGSPQLYIMSASGGGARRISYGSGQYGSPVWSPRGDLIAFTRIGH---------GGFSL 375
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
V + DG R+ T G P+ P+G+ + F
Sbjct: 376 GVMNPDGTG--ERILTQGFTVESPTFCPNGRVLAF 408
>gi|414341365|ref|YP_006982886.1| translocation protein TolB [Gluconobacter oxydans H24]
gi|411026700|gb|AFV99954.1| translocation protein TolB [Gluconobacter oxydans H24]
Length = 454
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYV--VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
P F+P D++AF+ + P VY+ + S G + +F+ + P VV +
Sbjct: 221 PRFNPARDQVAFMSYANNRPRVYLFDLGSGGQQMLGEFDGISFAPRFSPDGSRVVLS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
A+ DI V D+ S + ++ G + P SPDG IVF S R G L
Sbjct: 278 ---ATRGGGSDIF---VVDLASRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDRGGSPQL 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG G R++ G WSP G+ IAF G G F + +++P+GTG
Sbjct: 332 YIMSASGG---GARRISYGSGQYGSPVWSPRGDLIAFT----RIGHGGFSLGVMNPDGTG 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L Q + P F P+G+ + F
Sbjct: 385 ERILTQGFT---VESPTFCPNGRVLAF 408
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 489 IISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG ++ R+ T G+ P +P + F S +Y+ D G
Sbjct: 195 ITRLALMDQDGFNS--RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSG-- 250
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
G L E +SPDG + ++ R G GS +++++ ++ SG A
Sbjct: 251 -GQQMLGEFDGISFAPRFSPDGSRVVLSATR---GGGS-DIFVVDLASRSKHQITSSGGA 305
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P FSPDG IVF SD GG +P +++ + G +R++ S +
Sbjct: 306 -IDTSPCFSPDGSQIVFNSDRGG-------SP-------QLYIMSASGGGARRISYGSGQ 350
Query: 668 DGTPAWGPR 676
G+P W PR
Sbjct: 351 YGSPVWSPR 359
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 323 FTPATSPGNNK--FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
TP +P ++ F++ A RP + LFDL L F P SPD
Sbjct: 219 LTPRFNPARDQVAFMSYANNRP-----RVYLFDLGSGGQQMLGEF---DGISFAPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI--SLFRFDGSFPSFSPKGDRIAFVE- 437
SRV RGG G++ +++ I S D S P FSP G +I F
Sbjct: 271 GSRVVLSATRGG-----GSDIFVVDLASRSKHQITSSGGAIDTS-PCFSPDGSQIVFNSD 324
Query: 438 ---FPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
P +Y++++ G R++ + + S VW P + + +T G S+
Sbjct: 325 RGGSPQLYIMSASGGGARRISYGSGQYGSPVWSPRGDLIAFTRIGH---------GGFSL 375
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
V + DG R+ T G P+ P+G+ + F
Sbjct: 376 GVMNPDGTG--ERILTQGFTVESPTFCPNGRVLAF 408
>gi|260431108|ref|ZP_05785079.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414936|gb|EEX08195.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter
lacuscaerulensis ITI-1157]
Length = 439
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P +Y+++ ++++ ++ +FS + P ++VY+
Sbjct: 210 PRFSPAGDRLLYTSYESGRPRIYLLDVGRVKKQELKTQDGTMSFSPRFSPDGRSIVYS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ +++ V RLT PS +PDG IVF S R+G
Sbjct: 268 ----LTQGGNTDLWKMDLASGQSV----RLTNTPAIETAPSYAPDGSRIVFESDRSGTPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 320 LYVMPANGGEA---TRISFGQGRYGTPVWSPRGDLIAFTKQN----KGRFHIGVMRVDGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGR-----------SSLYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + T + D P+WGP
Sbjct: 419 NLRPVRTPDGGSD--PSWGP 436
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 36/256 (14%)
Query: 301 QTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI 360
+ ++ + ++Q +T P SP ++ + + S I L D+ + K
Sbjct: 186 RLAIMDYDGANVQYLTDSAAIVLAPRFSPAGDRLLYTSYE---SGRPRIYLLDVGRVKKQ 242
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLF 417
EL T +P SPD + Y +GG+T + D + + +P + +
Sbjct: 243 ELK--TQDGTMSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQSVRLTNTPAIETA-- 298
Query: 418 RFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF-KNAFST-VWDPVREAV 471
PS++P G RI F P +YV+ ++G ++ F + + T VW P + +
Sbjct: 299 ------PSYAPDGSRIVFESDRSGTPQLYVMPANGGEATRISFGQGRYGTPVWSPRGDLI 352
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RST 530
+T I V VDG + RL T + P+ SP+G+ I+F R T
Sbjct: 353 AFT---------KQNKGRFHIGVMRVDG--SEERLLTASFLDEGPTWSPNGRVIMFTRET 401
Query: 531 R--TGYKNLYIMDAEG 544
+ +G +LY +D G
Sbjct: 402 QGASGRSSLYSVDISG 417
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 41/207 (19%)
Query: 480 FASESSEVDI--ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP G +++ S +G +
Sbjct: 173 FVSESGPKDQRRKRLAIMDYDGAN-VQYLTDSAAIVLAPRFSPAGDRLLYTSYESGRPRI 231
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y++D G + E D ++SP R +P S L T
Sbjct: 232 YLLDV------GRVKKQELKTQDGTMSFSP----------RFSPDGRSIVYSLTQGGNTD 275
Query: 598 LRKL-IQSGSAGRANH-------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
L K+ + SG + R + P ++PDG IVF SD G TP +++
Sbjct: 276 LWKMDLASGQSVRLTNTPAIETAPSYAPDGSRIVFESDRSG-------TP-------QLY 321
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ +G + R++ GTP W PR
Sbjct: 322 VMPANGGEATRISFGQGRYGTPVWSPR 348
>gi|78186497|ref|YP_374540.1| TolB protein [Chlorobium luteolum DSM 273]
gi|78166399|gb|ABB23497.1| TolB protein, putative [Chlorobium luteolum DSM 273]
Length = 449
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 38/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P+ SP G R+AF ++ PG+ ++N ++RR + + ++ DP + S G
Sbjct: 224 PALSPDGTRLAFTDYTSGRPGLKIMNM--ADRRISAVRQSGVSI-DPG-----WRSNGEV 275
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
+ S E D I + DG + R++T++ + PS SPDG + F S R G ++I
Sbjct: 276 ATTLSFEGDQ-DIYLVRPDGTLS-RKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFI 333
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
+D G+ RLT +T +WSP G+ IA+ + N G ++ I P+G+G
Sbjct: 334 LDLGTGQ---TRRLTYNGNYNTQPSWSPGGDKIAYTTMEKN---GEINIFTIRPDGSGAT 387
Query: 600 KLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L S R N P +SP G IVFTS Q +++ + +G +
Sbjct: 388 RLT---SGARENESPSWSPGGDMIVFTSG--------------RQGQKKLYVMNANGDNQ 430
Query: 659 KRLTQNSFEDGTPAW 673
+RL Q E P+W
Sbjct: 431 RRLLQMEGEQMQPSW 445
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 413 DISLFRFDGSF-------------PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY 455
DI L R DG+ PSFSP G ++AFV P V++++ R++
Sbjct: 286 DIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLT 345
Query: 456 FKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513
+ ++T W P + + YT+ ++ E++I +I D S RLT+ + N
Sbjct: 346 YNGNYNTQPSWSPGGDKIAYTT-----MEKNGEINIFTIRPDG----SGATRLTSGAREN 396
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
PS SP G IVF S R G K LY+M+A G
Sbjct: 397 ESPSWSPGGDMIVFTSGRQGQKKLYVMNANG 427
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 52/196 (26%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGE--- 570
P++SPDG + F +G L IM+ R++ S + W +GE
Sbjct: 224 PALSPDGTRLAFTDYTSGRPGLKIMNMAD------RRISAVRQSGVSIDPGWRSNGEVAT 277
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS---- 626
++F D+D +YL+ P+GT RK+ + S G P FSPDG + F S
Sbjct: 278 TLSFEGDQD--------IYLVRPDGTLSRKV--TSSRGIDLSPSFSPDGTKMAFVSARFG 327
Query: 627 -------DYGGISAEPIS------TPHQYQPYGE--------------IFKIKLDGSDLK 659
D G ++ T + P G+ IF I+ DGS
Sbjct: 328 NPQVFILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGAT 387
Query: 660 RLTQNSFEDGTPAWGP 675
RLT + E+ +P+W P
Sbjct: 388 RLTSGARENESPSWSP 403
>gi|114327770|ref|YP_744927.1| translocation protein TolB [Granulibacter bethesdensis CGDNIH1]
gi|114315944|gb|ABI62004.1| tolB protein [Granulibacter bethesdensis CGDNIH1]
Length = 452
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 420 DGSF----PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVRE 469
DGS+ P F P D I F+ + P VY N +R + + F+ + P
Sbjct: 219 DGSWMVLTPRFHPTRDEIVFMSYANNRPRVYTFNLATGGQRMLGEWPGMTFAPRFSPDGS 278
Query: 470 AVVY--TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
+VV T GG S++ ++ + G R+LT +G + P SPDG IVF
Sbjct: 279 SVVMSMTRGG------GSDIYVVGL------GGGGHRQLTNSGSIDTSPCFSPDGSQIVF 326
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
S R G + LY+M G +G G+ R++ G WSP G+ IAF GS ++
Sbjct: 327 NSDRGGDQQLYVM---GADGSGVRRISFGSGRYATPVWSPRGDLIAFT----RLGSSAWN 379
Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ ++ P+G+G R L Q P F P+G+ ++F S GG
Sbjct: 380 IGVMKPDGSGERILAQGYD---VEGPTFCPNGRVLMFWSASGG 419
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 497 VDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+D SA R T+G P P IVF S +Y + G G L E
Sbjct: 207 MDQDSANNRYLTDGSWMVLTPRFHPTRDEIVFMSYANNRPRVYTFNLATG---GQRMLGE 263
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +SPDG + + R G GS ++Y++ G G R+L SGS P F
Sbjct: 264 WPGMTFAPRFSPDGSSVVMSMTR---GGGS-DIYVVGLGGGGHRQLTNSGSI--DTSPCF 317
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDG IVF SD GG +++ + DGS ++R++ S TP W P
Sbjct: 318 SPDGSQIVFNSDRGGDQ--------------QLYVMGADGSGVRRISFGSGRYATPVWSP 363
Query: 676 R 676
R
Sbjct: 364 R 364
>gi|427427980|ref|ZP_18918022.1| tolB protein precursor protein [Caenispirillum salinarum AK4]
gi|425882681|gb|EKV31360.1| tolB protein precursor protein [Caenispirillum salinarum AK4]
Length = 451
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I F+ + P V++ N D + R+++ + F+ + P V+ S
Sbjct: 222 PRFSPTSQEITFMSYSNGVPRVFLYNID-TGRQELLGEFPGMTFAPRFSPDGNKVIL-SM 279
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ SE E+D+ + + RLT + + PS SPDG+ I F S R G +
Sbjct: 280 ARDGNSEIYEMDLRT---------RRITRLTNHPAIDTSPSYSPDGQQITFNSDRGGAQQ 330
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+MDA+GG + R++ G WSP G+ IAF + SG F + ++ P+G+
Sbjct: 331 IYVMDADGGN---VRRISFGDGRYATPVWSPRGDLIAFTKMK----SGQFYIGVMRPDGS 383
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIV-FTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L + P ++P+G+ ++ F GG +A P ++ + L G
Sbjct: 384 GERML---ATDYLVEGPTWAPNGRVLMFFRQSRGGPNAAP-----------KLVTVDLTG 429
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+ +RL + PAW P
Sbjct: 430 QN-ERLVVTPQDASDPAWSP 448
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 32/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R T+G + P SP + I F S G +++ + + G
Sbjct: 199 LAIMDQDG--ANHRYLTDGSSLVLTPRFSPTSQEITFMSYSNGVPRVFLYNIDTGRQ--- 253
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L E P +SPDG + + RD G+ E+Y + + +L +
Sbjct: 254 ELLGEFPGMTFAPRFSPDGNKVILSMARD----GNSEIYEMDLRTRRITRLTNHPAID-- 307
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG+ I F SD GG +I+ + DG +++R+ SF DG
Sbjct: 308 TSPSYSPDGQQITFNSDRGGAQ--------------QIYVMDADGGNVRRI---SFGDGR 350
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 351 YATPVWSPR 359
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 36/192 (18%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP NK I R S ++L + +TR + +P
Sbjct: 260 PGM-TFAPRFSPDGNKVILSMARDGNSEIYEMDL------RTRRITRLTNHPAIDTSPSY 312
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRF-DGSF--PSFSPK 429
SPD ++ ++ RGG+ + DG N + F DG + P +SP+
Sbjct: 313 SPDGQQITFNSDRGGAQQIYVMDADGGN-------------VRRISFGDGRYATPVWSPR 359
Query: 430 GDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS-TVWDPVREAVVY---TSGGPEFA 481
GD IAF + + V+ DGS R + W P +++ + GGP A
Sbjct: 360 GDLIAFTKMKSGQFYIGVMRPDGSGERMLATDYLVEGPTWAPNGRVLMFFRQSRGGPNAA 419
Query: 482 SESSEVDIISIN 493
+ VD+ N
Sbjct: 420 PKLVTVDLTGQN 431
>gi|189184452|ref|YP_001938237.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda]
gi|226705887|sp|B3CUF6.1|TOLB_ORITI RecName: Full=Protein TolB; Flags: Precursor
gi|189181223|dbj|BAG41003.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda]
Length = 453
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 25/211 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P FSP ++I +V + P V + + + N + + N FS + P ++ ++
Sbjct: 221 PVFSPNNNQILYVSYHNKIPTVRIHDLNSGNNKILASFNGITFSPRFSPDGNKILVSNSS 280
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + E+++++ +++LT N PS SPDG I F S R+G +
Sbjct: 281 TKNVTHIYEINLLT---------GKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM+ +GG + RLT P + T WSP +IAF +G F + +I +G+
Sbjct: 332 YIMNDQGGN---IKRLTSQPGAYTTPAWSPTNNYIAFTKIE----AGEFSIGVIKLDGSN 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
R + + P ++PDGK+I+F+ Y
Sbjct: 385 KRII---ATKHLVEGPSWAPDGKTIIFSRAY 412
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 30/206 (14%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
+VY S S SS+ I I + D DG A TNGKN+ P SP+ I++ S
Sbjct: 182 IVYVS-----ESNSSKGKIRRIAIMDQDG--ANHNYITNGKNHVITPVFSPNNNQILYVS 234
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+ I D G L +S +SPDG I ++ + +E+
Sbjct: 235 YHNKIPTVRIHDLNSGNNKILASFNGITFSP---RFSPDGNKILVSNSSTKNVTHIYEIN 291
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
L+ TG K + G + + P +SPDG I F SD G + +I+
Sbjct: 292 LL----TGKIKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGST--------------QIY 332
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G ++KRLT TPAW P
Sbjct: 333 IMNDQGGNIKRLTSQPGAYTTPAWSP 358
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 39/263 (14%)
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
H TP SP NN+ + V+ + R I + NK + ++ +P SPD
Sbjct: 217 HVITPVFSPNNNQILYVSYHNKIPTVR-IHDLNSGNNKILASFNGIT-----FSPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--- 437
+++ + LL IK S+ + PS+SP G +IAFV
Sbjct: 271 GNKILVSNSSTKNVTHIYEINLLTGKIKQLTKGQSI----NTSPSYSPDGSKIAFVSDRS 326
Query: 438 -FPGVYVVNSDGSNRRQVYFK-NAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINV 494
+Y++N G N +++ + A++T W P + +T E SI V
Sbjct: 327 GSTQIYIMNDQGGNIKRLTSQPGAYTTPAWSPTNNYIAFT---------KIEAGEFSIGV 377
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-------RSTRTGYKNLYIMDAEGGEG 547
+DG + +R+ PS +PDGK I+F +ST T K LY +D G
Sbjct: 378 IKLDGSN--KRIIATKHLVEGPSWAPDGKTIIFSRAYKATKSTSTKVK-LYSVDCTGYN- 433
Query: 548 YGLHRLTEGPWSDTMCNWSPDGE 570
R + P + + NWS + E
Sbjct: 434 ---EREIQTPENASDPNWSNEYE 453
>gi|284036826|ref|YP_003386756.1| Periplasmic component of the Tol biopolymer transport system-like
protein [Spirosoma linguale DSM 74]
gi|283816119|gb|ADB37957.1| Periplasmic component of the Tol biopolymer transport system-like
protein [Spirosoma linguale DSM 74]
Length = 512
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
Query: 441 VYVVNSDGSNRRQVYFKN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499
+Y V G +Q+ K ++ W P ++ +V+T S ++E DI S+ G
Sbjct: 318 IYTVPVTGGTPKQITPKGPSYLHGWSPDKKTLVFT------GSRNNEYDIYSV---PSAG 368
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
VR G ++ P +PDGK+I F S+RTG +Y M A+G E +T G +
Sbjct: 369 GPEVRLTEAKGLDDG-PEYTPDGKYIYFNSSRTGTMQIYRMKADGSE---QEAITNGEFH 424
Query: 560 DTMCNWSPDGEWIAFAS-------DRDNPGSGSFEMYLIHPNGTGLRKLIQ--SGSAGRA 610
D + SPDG+WI F S D+P + ++ +G+G K+I G G
Sbjct: 425 DWFPHISPDGKWIIFLSFLKEEVKPDDHPFYKHVYLRMLPISGSGQPKVIAYIYGGQGTI 484
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPI 636
N P +SPD K + F S+ S PI
Sbjct: 485 NTPSWSPDSKRVAFISNTAENSVSPI 510
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 53/265 (20%)
Query: 452 RQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
RQV + K+ + W P + ++Y G + ++ +N DV
Sbjct: 240 RQVIYNVPKSIQAPNWTPDGKTLLYNGDGLMYTFNLAKRKPTVLNTGDVK---------- 289
Query: 509 NGKNNAFPSVSPDGKWIVFRS--TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
NN +S DGK + S G +Y + GG + +GP + WS
Sbjct: 290 --NNNNDHVLSFDGKMLGLSSGVKELGGSIIYTVPVTGGTPKQI--TPKGP--SYLHGWS 343
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PD + + F R+N +++Y + G +L ++ G + P ++PDGK I F S
Sbjct: 344 PDKKTLVFTGSRNN----EYDIYSVPSAGGPEVRLTEA--KGLDDGPEYTPDGKYIYFNS 397
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP--------RFI 678
G +I+++K DGS+ + +T F D P P F+
Sbjct: 398 SRTGTM--------------QIYRMKADGSEQEAITNGEFHDWFPHISPDGKWIIFLSFL 443
Query: 679 RPVDVEEVKNEQCAFEDCHWLNETP 703
+ EEVK + F +L P
Sbjct: 444 K----EEVKPDDHPFYKHVYLRMLP 464
>gi|118574590|sp|Q3B584.2|TOLB_PELLD RecName: Full=Protein TolB; Flags: Precursor
Length = 436
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 38/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P+ SP G R+AF ++ PG+ ++N ++RR + + ++ DP + S G
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNM--ADRRISAVRQSGVSI-DPG-----WRSNGEV 262
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
+ S E D I + DG + R++T++ + PS SPDG + F S R G ++I
Sbjct: 263 ATTLSFEGDQ-DIYLVRPDGTLS-RKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFI 320
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
+D G+ RLT +T +WSP G+ IA+ + N G ++ I P+G+G
Sbjct: 321 LDLGTGQ---TRRLTYNGNYNTQPSWSPGGDKIAYTTMEKN---GEINIFTIRPDGSGAT 374
Query: 600 KLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L S R N P +SP G IVFTS Q +++ + +G +
Sbjct: 375 RLT---SGARENESPSWSPGGDMIVFTSG--------------RQGQKKLYVMNANGDNQ 417
Query: 659 KRLTQNSFEDGTPAW 673
+RL Q E P+W
Sbjct: 418 RRLLQMEGEQMQPSW 432
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 413 DISLFRFDGSF-------------PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY 455
DI L R DG+ PSFSP G ++AFV P V++++ R++
Sbjct: 273 DIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLT 332
Query: 456 FKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513
+ ++T W P + + YT+ ++ E++I +I D S RLT+ + N
Sbjct: 333 YNGNYNTQPSWSPGGDKIAYTT-----MEKNGEINIFTIRPDG----SGATRLTSGAREN 383
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
PS SP G IVF S R G K LY+M+A G
Sbjct: 384 ESPSWSPGGDMIVFTSGRQGQKKLYVMNANG 414
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 52/196 (26%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEW-- 571
P++SPDG + F +G L IM+ R++ S + W +GE
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNMAD------RRISAVRQSGVSIDPGWRSNGEVAT 264
Query: 572 -IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS---- 626
++F D+D +YL+ P+GT RK+ + S G P FSPDG + F S
Sbjct: 265 TLSFEGDQD--------IYLVRPDGTLSRKV--TSSRGIDLSPSFSPDGTKMAFVSARFG 314
Query: 627 -------DYGGISAEPIS------TPHQYQPYGE--------------IFKIKLDGSDLK 659
D G ++ T + P G+ IF I+ DGS
Sbjct: 315 NPQVFILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGAT 374
Query: 660 RLTQNSFEDGTPAWGP 675
RLT + E+ +P+W P
Sbjct: 375 RLTSGARENESPSWSP 390
>gi|317037459|ref|XP_001398515.2| hypothetical protein ANI_1_970164 [Aspergillus niger CBS 513.88]
Length = 650
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 424 PSFSPKGDRIAFVEFPGV---YVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGG 477
P KG + PG+ YV N+DGSN R + + + W P E +V+TS
Sbjct: 17 PVAGKKGAMLMNRIAPGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTS-- 74
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-N 536
E A + + D+ + + D ++ + T+ ++SP+G + F T YK N
Sbjct: 75 -ERAGDG-QSDLYRVRPNGTD----LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSN 128
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSG------ 584
++I + + G + + TE T+ + WSPDGEW+ F SDR+ P G
Sbjct: 129 IWIQNLDTGALWNVTNSTEVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISG 188
Query: 585 -----SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+Y I P+GTG R++ + + P FSPDG IVF
Sbjct: 189 WEHTQELSIYAIRPDGTGFRRVANRTGYCQGS-PKFSPDGNRIVF 232
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 155/387 (40%), Gaps = 76/387 (19%)
Query: 323 FTPATSPGNNKFIAVATRRPTSS-YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
T AT PG+ + A + S+ YR+ L +H +P SPD
Sbjct: 299 LTNATYPGSINYTAAQPQGSVSAAYRNASLVG-----------------YHRSPAWSPDG 341
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVEF 438
+ Y R I PL S +RF FP S +G ++ +
Sbjct: 342 GHMVYEHVEWDPVRP----------INKPLYSWSKDWEYRFSDVFPQMSAQG-KVVYTSQ 390
Query: 439 PGV----YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494
V +N+DG+ ++ + F PVR T+G + S + +++++ +
Sbjct: 391 QTVNSSLVTMNADGTGSNDIFDGSRF-----PVRVNSSNTNGTFQ-GSWRGDGEVLAVGL 444
Query: 495 DD--------------VDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYK---- 535
D V + R TNG NA FP++SPDG+W+V+R
Sbjct: 445 GDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPDGRWLVWREFAYSASEDPI 504
Query: 536 --NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSG----SFEM 588
L MD G+ L W +T ++PDG I F P SG ++++
Sbjct: 505 PLGLRRMDLTTGDVVAL----SSSWDNTPM-FAPDGSNRIVFTRRTSWPISGPLDDNYDV 559
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ +G+ +R+L + A H ++ +GK I + + G E + QPY I
Sbjct: 560 MTMAVDGSDVRQLTK--LACNDAHAVWTHEGK-IAWATGMFGFQDEATIYDNNQQPYPFI 616
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ DGS+ LTQ+ +ED P + P
Sbjct: 617 MQMEADGSNWTVLTQSRWEDTMPLYIP 643
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGE 546
I + V + DG + L + SPDG+WIVF S R G +LY + G +
Sbjct: 34 ISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTD 93
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L + P + SP+G +AFA N S +++ + + L + S
Sbjct: 94 ---LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKS---NIWIQNLDTGALWNVTNSTE 147
Query: 607 -AGRAN------HPYFSPDGKSIVFTSDYGG--ISAEPISTPHQYQPYGEIFKIKLDGSD 657
AG P +SPDG+ +VFTSD IS Q I+ I+ DG+
Sbjct: 148 VAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQEL-SIYAIRPDGTG 206
Query: 658 LKRLTQNS-FEDGTPAWGPRFIRPVDVE 684
+R+ + + G+P + P R V E
Sbjct: 207 FRRVANRTGYCQGSPKFSPDGNRIVFYE 234
>gi|323524838|ref|YP_004226991.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1001]
gi|323381840|gb|ADX53931.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1001]
Length = 430
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 154/384 (40%), Gaps = 86/384 (22%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D + +RRLT + P+ SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----TGLRRLTQGSSIDTEPTFSPDGQTIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A+G R+T +T SPDG+ +A+ S G+F++Y+
Sbjct: 308 PQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGAFKLYIQDLQ 363
Query: 595 G---TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
G TGL S P F+ +G+ I++ + G G + +
Sbjct: 364 GGTATGLTDTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAV 403
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ P+WGP
Sbjct: 404 STDGRTRQVLSVQGGSVREPSWGP 427
>gi|134084093|emb|CAK43122.1| unnamed protein product [Aspergillus niger]
Length = 675
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 424 PSFSPKGDRIAFVEFPGV---YVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGG 477
P KG + PG+ YV N+DGSN R + + + W P E +V+TS
Sbjct: 42 PVAGKKGAMLMNRIAPGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTS-- 99
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-N 536
E A + + D+ + + D ++ + T+ ++SP+G + F T YK N
Sbjct: 100 -ERAGDG-QSDLYRVRPNGTD----LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSN 153
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDNPGSG------ 584
++I + + G + + TE T+ + WSPDGEW+ F SDR+ P G
Sbjct: 154 IWIQNLDTGALWNVTNSTEVAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISG 213
Query: 585 -----SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+Y I P+GTG R++ + + P FSPDG IVF
Sbjct: 214 WEHTQELSIYAIRPDGTGFRRVANRTGYCQGS-PKFSPDGNRIVF 257
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 155/387 (40%), Gaps = 76/387 (19%)
Query: 323 FTPATSPGNNKFIAVATRRPTSS-YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
T AT PG+ + A + S+ YR+ L +H +P SPD
Sbjct: 324 LTNATYPGSINYTAAQPQGSVSAAYRNASLVG-----------------YHRSPAWSPDG 366
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVEF 438
+ Y R I PL S +RF FP S +G ++ +
Sbjct: 367 GHMVYEHVEWDPVRP----------INKPLYSWSKDWEYRFSDVFPQMSAQG-KVVYTSQ 415
Query: 439 PGV----YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494
V +N+DG+ ++ + F PVR T+G + S + +++++ +
Sbjct: 416 QTVNSSLVTMNADGTGSNDIFDGSRF-----PVRVNSSNTNGTFQ-GSWRGDGEVLAVGL 469
Query: 495 DD--------------VDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYK---- 535
D V + R TNG NA FP++SPDG+W+V+R
Sbjct: 470 GDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPDGRWLVWREFAYSASEDPI 529
Query: 536 --NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSG----SFEM 588
L MD G+ L W +T ++PDG I F P SG ++++
Sbjct: 530 PLGLRRMDLTTGDVVAL----SSSWDNTPM-FAPDGSNRIVFTRRTSWPISGPLDDNYDV 584
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ +G+ +R+L + A H ++ +GK I + + G E + QPY I
Sbjct: 585 MTMAVDGSDVRQLTK--LACNDAHAVWTHEGK-IAWATGMFGFQDEATIYDNNQQPYPFI 641
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ DGS+ LTQ+ +ED P + P
Sbjct: 642 MQMEADGSNWTVLTQSRWEDTMPLYIP 668
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGE 546
I + V + DG + L + SPDG+WIVF S R G +LY + G +
Sbjct: 59 ISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTD 118
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
L + P + SP+G +AFA N S +++ + + L + S
Sbjct: 119 ---LQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKS---NIWIQNLDTGALWNVTNSTE 172
Query: 607 -AGRAN------HPYFSPDGKSIVFTSDYGG--ISAEPISTPHQYQPYGEIFKIKLDGSD 657
AG P +SPDG+ +VFTSD IS Q I+ I+ DG+
Sbjct: 173 VAGDYTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQEL-SIYAIRPDGTG 231
Query: 658 LKRLTQNS-FEDGTPAWGPRFIRPVDVE 684
+R+ + + G+P + P R V E
Sbjct: 232 FRRVANRTGYCQGSPKFSPDGNRIVFYE 259
>gi|304320242|ref|YP_003853885.1| translocation protein TolB precursor [Parvularcula bermudensis
HTCC2503]
gi|303299144|gb|ADM08743.1| translocation protein TolB precursor [Parvularcula bermudensis
HTCC2503]
Length = 442
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 52/272 (19%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEF-----PGVYVVNSDGSNR------RQVYFKNAFSTVWD 465
FD P FSP +I F+ VY+ + + + R + F FST
Sbjct: 207 LNFDALTPRFSPTQQQIIFLAMFDDRPSQVYLYDIETTEMEALGSWRGMTFAPRFSTDGR 266
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
V ++ E+ DI +++ + RLT N + PS+SPDG+ I
Sbjct: 267 GVLLSI----------EEAGNTDIARMDLI----TRRIERLTRNPAIDTSPSMSPDGRHI 312
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
F S R G + +Y+M+A+G + R+T G + WSP G+ IAF G
Sbjct: 313 TFASDRGGSQQIYVMNADGSDQ---RRITFGNGTYGTPVWSPRGDLIAFT----RLYRGR 365
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
F + ++ P+GTG R L +S P +SP+G+ I+F + +P
Sbjct: 366 FYIGVVKPDGTGERLLTES---YLDEGPTWSPNGRVIMFF--------------RENRPG 408
Query: 646 G--EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G ++ I L G +L+R+ + S E PAW P
Sbjct: 409 GPVNLYSIDLTGRNLRRV-ETSTEASDPAWSP 439
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
P SPDG+ I F SD GG +I+ + DGSD +R+T + GTP
Sbjct: 303 PSMSPDGRHITFASDRGGSQ--------------QIYVMNADGSDQRRITFGNGTYGTPV 348
Query: 673 WGPR 676
W PR
Sbjct: 349 WSPR 352
>gi|189426516|ref|YP_001953693.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter lovleyi SZ]
gi|189422775|gb|ACD97173.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
lovleyi SZ]
Length = 430
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
SA RLT + N P+ +PDG I F S R G +++MDA GG + RL +
Sbjct: 278 SAPNRLTVSHAANVSPAWTPDGSKIAFVSDRLGKPQIFVMDANGGN---VRRLITSGSYN 334
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
+WSP G+ +AFA +G F++++ + +G+ IQ G P +SPDG+
Sbjct: 335 VNPSWSPKGDKLAFAR-----MAGGFQIFVANADGS---NEIQLTFEGNNERPRWSPDGR 386
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
I F+S GG A I+ ++ DGS +++++ P W PR
Sbjct: 387 LITFSSRRGGQEA--------------IYVMRADGSGQTKVSRSKGLSQHPVWTPR 428
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 34/190 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG ++ ++LT N N P +SPDG+ ++F S + G +LY L
Sbjct: 182 LAVMDWDGFNS-QQLTGNRSINLSPDISPDGREVIFTSYKRGNPDLY--------KRALS 232
Query: 552 RLTEGPWS-----DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
E P S + WSPDG IA A +D G+ E+Y + +G+ +L S +
Sbjct: 233 SNLEVPVSSRSGLNITGAWSPDGNRIALALSKD----GNTEIYTVAKDGSAPNRLTVSHA 288
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
A + P ++PDG I F SD G +P +IF + +G +++RL +
Sbjct: 289 ANVS--PAWTPDGSKIAFVSDRLG------------KP--QIFVMDANGGNVRRLITSGS 332
Query: 667 EDGTPAWGPR 676
+ P+W P+
Sbjct: 333 YNVNPSWSPK 342
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 47/271 (17%)
Query: 208 TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE 267
+++LT + SP +SP G+ SY D LS+++ + ++ R +
Sbjct: 192 SQQLTGNRSINLSPDISPDGREVIFTSYKRGNPDLYKRALSSNLEVPVS----SRSGLNI 247
Query: 268 NGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327
G W + L + D +Y V + + + R+T +PA
Sbjct: 248 TGAWSPDGNRIALALSK----DGNTEIYTV--------AKDGSAPNRLTVSHAANVSPAW 295
Query: 328 SPGNNKFIAVATR--RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385
+P +K V+ R +P ++F + N + R ++ ++++NP SP ++
Sbjct: 296 TPDGSKIAFVSDRLGKP-------QIFVMDANGG-NVRRLITSGSYNVNPSWSPKGDKLA 347
Query: 386 YHKCRGG----STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG- 440
+ + GG DG+N++ L F + P +SP G I F G
Sbjct: 348 FARMAGGFQIFVANADGSNEIQLT-----------FEGNNERPRWSPDGRLITFSSRRGG 396
Query: 441 ---VYVVNSDGSNRRQVYFKNAFST--VWDP 466
+YV+ +DGS + +V S VW P
Sbjct: 397 QEAIYVMRADGSGQTKVSRSKGLSQHPVWTP 427
>gi|407784260|ref|ZP_11131437.1| translocation protein TolB [Oceanibaculum indicum P24]
gi|407197447|gb|EKE67507.1| translocation protein TolB [Oceanibaculum indicum P24]
Length = 448
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 34/258 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++N D + + + F+ + P AV+ +
Sbjct: 216 PRFSPTLQEITYLAYFNNKPRVYLLNIDTGQQEVLGDFPGMTFAPRFSPDGNAVIMS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + DI ++++ V RLT + + PS SPDG+ +VF S R G + L
Sbjct: 273 ---MARNGNSDIFAMDLR----TRKVLRLTNDPAIDTSPSYSPDGRQVVFNSDRGGSQQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+ +GG + R++ G WSP G+ IAF G F + ++ P+G+G
Sbjct: 326 YVMEGDGGN---VRRISFGEGRYATPVWSPRGDLIAFT----KMNRGRFYIGVMRPDGSG 378
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L +S P ++P+G+ ++F P T Q +++ I L G +
Sbjct: 379 ERLLTESFL---DEGPTWAPNGRVLMF------FRQTPTDTRGQ-GGTAKLYSIDLTGRN 428
Query: 658 LKRLTQNSFEDGTPAWGP 675
L+ + + PAW P
Sbjct: 429 LREVV-TPIDASDPAWSP 445
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + D DG A R T+G P SP + I + + +Y+++ + G+
Sbjct: 192 QLAIMDQDG--ANHRFLTDGNVLVLTPRFSPTLQEITYLAYFNNKPRVYLLNIDTGQQ-- 247
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SGSAG 608
L + P +SPDG + + R N S F M L RK+++ +
Sbjct: 248 -EVLGDFPGMTFAPRFSPDGNAVIMSMAR-NGNSDIFAMDL------RTRKVLRLTNDPA 299
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P +SPDG+ +VF SD GG +++ ++ DG +++R++
Sbjct: 300 IDTSPSYSPDGRQVVFNSDRGGSQ--------------QLYVMEGDGGNVRRISFGEGRY 345
Query: 669 GTPAWGPR 676
TP W PR
Sbjct: 346 ATPVWSPR 353
>gi|393719825|ref|ZP_10339752.1| translocation protein TolB [Sphingomonas echinoides ATCC 14820]
Length = 477
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 50/254 (19%)
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
PKG RI + +++ DG N R + A + P + ++VY S
Sbjct: 219 PKGKRIKRLA-----IMDQDGGNHRFLTNGQAIALTPRLSPDQRSIVYMS---------Y 264
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
D +I V D++ S +RL N F P VSPDGKW++F G ++Y + G
Sbjct: 265 VEDRPAIYVYDIE--SGRQRLLVPNTNLTFAPRVSPDGKWVLFSMAVGGNTDIYRVPFSG 322
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G RLT+ P DT +SPDG I F SDR SG+ ++Y+++ +G+ +++ S
Sbjct: 323 GT---PQRLTDSPAIDTGGTYSPDGSRIVFESDR----SGTQQLYVMNADGSQQQRI--S 373
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL---DGSDLKRL 661
+GR P +SP G I FT G F+I + G + + L
Sbjct: 374 FGSGRYATPVWSPRGNLIAFTK------------------IGGSFRIGIMSPAGGNEQLL 415
Query: 662 TQNSFEDGTPAWGP 675
T + ++G P+W P
Sbjct: 416 TDGAQDEG-PSWSP 428
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 55/293 (18%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N ++ I+L P SP I ++ + P +YV + + S R
Sbjct: 232 QDGGNHRFLTNGQA----IALT------PRLSPDQRSIVYMSYVEDRPAIYVYDIE-SGR 280
Query: 452 RQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+++ N F+ P + V+++ + DI + +RLT
Sbjct: 281 QRLLVPNTNLTFAPRVSPDGKWVLFS------MAVGGNTDIYRVPFSG----GTPQRLTD 330
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ + + SPDG IVF S R+G + LY+M+A+G + R++ G WSP
Sbjct: 331 SPAIDTGGTYSPDGSRIVFESDRSGTQQLYVMNADGSQ---QQRISFGSGRYATPVWSPR 387
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G IAF GSF + ++ P G G +L+ G+ + P +SP+G+ ++F
Sbjct: 388 GNLIAFTKI-----GGSFRIGIMSPAG-GNEQLLTDGA--QDEGPSWSPNGRVLMFFRSS 439
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT-PAWGPRFIRP 680
GG + +++ + L G +++R+ + DG+ PAWGP +RP
Sbjct: 440 GGGNGR-----------ADLWSVDLTGVNVRRVP--TVLDGSDPAWGP--LRP 477
>gi|78189865|ref|YP_380203.1| TolB protein [Chlorobium chlorochromatii CaD3]
gi|119371039|sp|Q3APB5.1|TOLB_CHLCH RecName: Full=Protein TolB; Flags: Precursor
gi|78172064|gb|ABB29160.1| TolB protein, putative [Chlorobium chlorochromatii CaD3]
Length = 440
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 40/263 (15%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKNAFSTVWDPVREAV 471
FR P+ SP G +AF +F P + + + G R N+ W RE
Sbjct: 207 FRSIALTPALSPDGAYLAFTDFTGGKPALAIRELATGKTTRVAKKGNSIDPAWRNSRELA 266
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTTNGKNNAFPSVSPDGKWIVFRST 530
F+ E + + +D AV+ RLT++ + P+ SPDG+ + F S
Sbjct: 267 T------TFSFEGDQELYL------LDSAGAVKQRLTSSSGIDLSPTFSPDGRKMAFVSA 314
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
R+G +++ D G+ RLT +T WSP G+ IAF++ G +++
Sbjct: 315 RSGNPQIFVYDFSSGKS---QRLTFSGRYNTQPAWSPIGDKIAFSTWESG---GEINIFV 368
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
I+ +G+GL +L + +G P +SPDG+ IVF S+ G+ +++
Sbjct: 369 INTDGSGLTQL--TTQSGENESPSWSPDGRMIVFASNRQGVK--------------KLYV 412
Query: 651 IKLDGSDLKRLTQNSFEDGTPAW 673
+ DG + + L E P+W
Sbjct: 413 MMADGKNQRPLLAIGGEQTQPSW 435
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + LY++D+ G RLT D +SPDG +AF S R SG+ ++++
Sbjct: 273 GDQELYLLDSAGAVK---QRLTSSSGIDLSPTFSPDGRKMAFVSAR----SGNPQIFVYD 325
Query: 593 PNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI--F 649
+ ++L SG R N P +SP G I F++ ++ GEI F
Sbjct: 326 FSSGKSQRLTFSG---RYNTQPAWSPIGDKIAFST---------------WESGGEINIF 367
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
I DGS L +LT S E+ +P+W P
Sbjct: 368 VINTDGSGLTQLTTQSGENESPSWSP 393
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 95/261 (36%), Gaps = 36/261 (13%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
+YS + +LT + +PA+SP G Y A + + L+T
Sbjct: 191 IYSCDFDGANVHQLTNFRSIALTPALSPDGAYLAFTDFTGGKPALAIRELAT-------- 242
Query: 258 DGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317
T RV N P W + L E D + +L G V QR+T
Sbjct: 243 GKTTRVAKKGNSIDPAWRNSRELATTFSFEGDQEL----YLLDSAGAVK------QRLTS 292
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
+P SP K V+ R S I ++D K LT ++ P
Sbjct: 293 SSGIDLSPTFSPDGRKMAFVSAR---SGNPQIFVYDFSSGKSQRLTF---SGRYNTQPAW 346
Query: 378 SPDSSRVGYHKCRGGSTREDGN--NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
SP ++ + ST E G N ++ S L ++ + PS+SP G I F
Sbjct: 347 SPIGDKIAF------STWESGGEINIFVINTDGSGLTQLTTQSGENESPSWSPDGRMIVF 400
Query: 436 VE----FPGVYVVNSDGSNRR 452
+YV+ +DG N+R
Sbjct: 401 ASNRQGVKKLYVMMADGKNQR 421
>gi|338531048|ref|YP_004664382.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus fulvus HW-1]
gi|337257144|gb|AEI63304.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus fulvus HW-1]
Length = 367
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
+GV VR LT + P+VSPDGK + F +R G +Y +A +G G RLT
Sbjct: 165 EGVPEVR-LTRVPQGCFEPAVSPDGKEVAFVCSREGDPEIYAANA---DGSGERRLTFFH 220
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
D WSPDG+W+ SDR+ G +Y + P+G+ LR + G +SP
Sbjct: 221 TEDRTPKWSPDGKWLVIVSDRE----GKDRLYFLRPDGSDLRAVSGESFTGDEREAVWSP 276
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
DG+ + + S TP I+ + + G LT D PAW P
Sbjct: 277 DGQRLAYVS----------RTPEG---LARIWVVPVAGGAPVALTDGKHRDDMPAWSP 321
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
S + +I + N D S RRLT + P SPDGKW+V S R G LY
Sbjct: 194 VCSREGDPEIYAANADG----SGERRLTFFHTEDRTPKWSPDGKWLVIVSDREGKDRLYF 249
Query: 540 MDAEG-------GEGY------------------------GLHR-------------LTE 555
+ +G GE + GL R LT+
Sbjct: 250 LRPDGSDLRAVSGESFTGDEREAVWSPDGQRLAYVSRTPEGLARIWVVPVAGGAPVALTD 309
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
G D M WSPDG+++AF S+R+ G ++YL+ +GTG +L ++ A
Sbjct: 310 GKHRDDMPAWSPDGKYLAFVSERE----GDTDVYLMRADGTGQTRLTRAKGA 357
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 508 TNGKNNAFPSV-SPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM-CN 564
T G+ + +P SPDGK +V + G + M +G G P + +
Sbjct: 79 TRGEEDVYPGPPSPDGKSLLVIAAAEEGGLHRQQMRVLPLDGKGPAVPLHPPRARARNAS 138
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
W+PDG W+ SD G ++ + P G+ ++ + P SPDGK + F
Sbjct: 139 WAPDGTWLVAESD----AEGFSDVVRLVPR-EGVPEVRLTRVPQGCFEPAVSPDGKEVAF 193
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +P EI+ DGS +RLT ED TP W P
Sbjct: 194 VCSREG---DP-----------EIYAANADGSGERRLTFFHTEDRTPKWSP 230
>gi|163786907|ref|ZP_02181355.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1]
gi|159878767|gb|EDP72823.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1]
Length = 368
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D++G + V++LT +A P+VSP G IVF STR+G LY M+ +G +
Sbjct: 153 DSYDIFVADLEG-NIVKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGSD- 210
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T D +SPDG + F S R D G E+Y+
Sbjct: 211 --VKQITNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEMELYIC 268
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ LR+L G+A + P+F P G+ I+F+S++ P + ++ I
Sbjct: 269 NADGSDLRQLTDLGNANWS--PFFHPSGEKILFSSNFEAERGFPFN----------LYLI 316
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
+DG +LKR+T D P +
Sbjct: 317 DIDGKNLKRVTHGETFDAFPVF 338
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGG 477
P+ SPKGD+I F +Y +N DGS+ +Q+ + + + P +++ S
Sbjct: 180 PTVSPKGDKIVFTSTRSGDLELYTMNIDGSDVKQITNELGYDGGAFFSPDGTKLIFRSSR 239
Query: 478 P--------------EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
P E E +E+++ N D D +R+LT G N P P G+
Sbjct: 240 PKTEKEIKDYKDLLAEGLVEPTEMELYICNADGSD----LRQLTDLGNANWSPFFHPSGE 295
Query: 524 WIVFRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
I+F S + NLY++D +G L R+T G D +S +G+++AF+S+R+
Sbjct: 296 KILFSSNFEAERGFPFNLYLIDIDGKN---LKRVTHGETFDAFPVFSNNGKYLAFSSNRN 352
Query: 580 NPGSGSFEMYL 590
N G +++
Sbjct: 353 NGGGRDTNLFI 363
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 27/152 (17%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++++ D EG + +LT D SP G+ I F S R SG E+Y ++ +G
Sbjct: 156 DIFVADLEGNI---VKQLTNEVGYDAEPTVSPKGDKIVFTSTR----SGDLELYTMNIDG 208
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTS----------DYGGISAEPISTPHQYQPY 645
+ ++++ + G +FSPDG ++F S DY + AE + P +
Sbjct: 209 SDVKQI--TNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEM--- 263
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
E++ DGSDL++LT + G W P F
Sbjct: 264 -ELYICNADGSDLRQLT----DLGNANWSPFF 290
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 46/214 (21%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGG--EGYGLHRLTEGPW 558
R T G +NA S D K +VF+S G +++M+A + ++ G
Sbjct: 51 RQVTYGGDNAEAYWSFDDKQLVFQSNNVKWDVGCDQMFLMNANETFTDSIAPPMISTGKG 110
Query: 559 SDTMCNWSPDGEWIAFASD------------RDN-----PGSGSFEMYLIHPNGTGLRKL 601
T + PD + I +AS R N P S+++++ G +++L
Sbjct: 111 RTTCAYFLPDNKHIIYASTHLKQDKCPDTPLRKNGKYIWPIYDSYDIFVADLEGNIVKQL 170
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ G P SP G IVFTS G E++ + +DGSD+K++
Sbjct: 171 --TNEVGYDAEPTVSPKGDKIVFTSTRSGDL--------------ELYTMNIDGSDVKQI 214
Query: 662 TQNSFEDGTPAWGP-------RFIRPVDVEEVKN 688
T DG + P R RP +E+K+
Sbjct: 215 TNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKD 248
>gi|115376904|ref|ZP_01464125.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|310825361|ref|YP_003957719.1| tol-pal system beta propeller repeat protein [Stigmatella
aurantiaca DW4/3-1]
gi|115366083|gb|EAU65097.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|309398433|gb|ADO75892.1| Tol-pal system beta propeller repeat protein [Stigmatella
aurantiaca DW4/3-1]
Length = 349
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 508 TNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T K F P+VSPDG+ + F S+R G +Y+M A+G + R+T D WS
Sbjct: 155 TQVKEGCFEPAVSPDGREVAFVSSREGDPEIYVMKADGTDE---RRITAFHQEDREPRWS 211
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG+W++F S+R+ G +L+ P+GT LR + + +SPD K +VF
Sbjct: 212 PDGQWLSFISNRE----GRERYFLVRPDGTSLRAVSGEATKLDERELAWSPDSKKVVFVE 267
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ ++ +DG LT D PAW P
Sbjct: 268 -------------RLPEAKSRLWVAAVDGGAPVALTDGRSRDDAPAWSP 303
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 102/262 (38%), Gaps = 40/262 (15%)
Query: 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF 376
PP P+ SP +A + R S +L L + K P
Sbjct: 111 PPRARTRNPSWSPDGRWLVAESDARSFS-----DLVRLEPKAGTQEQPLTQVKEGCFEPA 165
Query: 377 ISPDSSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
+SPD V + R G + DG ++ I+ F + P +SP G
Sbjct: 166 VSPDGREVAFVSSREGDPEIYVMKADGTDERR----------ITAFHQEDREPRWSPDGQ 215
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFK----NAFSTVWDPVREAVVYTSGGPEFASE 483
++F+ ++V DG++ R V + + W P + VV+ PE S
Sbjct: 216 WLSFISNREGRERYFLVRPDGTSLRAVSGEATKLDERELAWSPDSKKVVFVERLPEAKSR 275
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ V VDG + V LT + P+ SPDGK++VF + R G +L++M A+
Sbjct: 276 --------LWVAAVDGGAPVA-LTDGRSRDDAPAWSPDGKYLVFVAERQGDVDLWLMRAD 326
Query: 544 GGEGYGLHRLTEGPWSDTMCNW 565
G G RLT D + W
Sbjct: 327 GS---GQTRLTTAKGPDWLPRW 345
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 120/312 (38%), Gaps = 42/312 (13%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
LV Q PG F A SP + +A R + H+E L E
Sbjct: 50 LVKPSGEETQLTKSPGEDDFPAAPSPDGKALLVIAAR--MVNGFHLEQMRLQPLDGGEPV 107
Query: 364 RFVSPKTHHLNPFISPDSS-RVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLF 417
P+ NP SPD V R S + G + L +K
Sbjct: 108 ALHPPRARTRNPSWSPDGRWLVAESDARSFSDLVRLEPKAGTQEQPLTQVK--------- 158
Query: 418 RFDGSF-PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREA 470
+G F P+ SP G +AFV P +YV+ +DG++ R++ + + W P +
Sbjct: 159 --EGCFEPAVSPDGREVAFVSSREGDPEIYVMKADGTDERRITAFHQEDREPRWSPDGQW 216
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
+ F S + + D + AV T + SPD K +VF
Sbjct: 217 L-------SFISNREGRERYFLVRPDGTSLRAVSGEATKLDEREL-AWSPDSKKVVFVER 268
Query: 531 RTGYKN-LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
K+ L++ +GG L T+G D WSPDG+++ F ++R G +++
Sbjct: 269 LPEAKSRLWVAAVDGGAPVAL---TDGRSRDDAPAWSPDGKYLVFVAER----QGDVDLW 321
Query: 590 LIHPNGTGLRKL 601
L+ +G+G +L
Sbjct: 322 LMRADGSGQTRL 333
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 37/181 (20%)
Query: 505 RLTTNGKNNAFPSV-SPDGKWIVFRSTRT--GY--KNLYIMDAEGGEGYGLH---RLTEG 556
+LT + + FP+ SPDGK ++ + R G+ + + + +GGE LH T
Sbjct: 59 QLTKSPGEDDFPAAPSPDGKALLVIAARMVNGFHLEQMRLQPLDGGEPVALHPPRARTRN 118
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSF-EMYLIHPN-GTGLRKLIQSGSAGRANHPY 614
P +WSPDG W+ SD + SF ++ + P GT + L Q P
Sbjct: 119 P------SWSPDGRWLVAESD-----ARSFSDLVRLEPKAGTQEQPLTQVKEG--CFEPA 165
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
SPDG+ + F S G +P EI+ +K DG+D +R+T ED P W
Sbjct: 166 VSPDGREVAFVSSREG---DP-----------EIYVMKADGTDERRITAFHQEDREPRWS 211
Query: 675 P 675
P
Sbjct: 212 P 212
>gi|339326835|ref|YP_004686528.1| protein TolB [Cupriavidus necator N-1]
gi|338166992|gb|AEI78047.1| protein TolB [Cupriavidus necator N-1]
Length = 457
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
PS+SP G R+A+V F P VYV + R V + ++ W P + +
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRTLVSNQKGNNSAPSWSPDGQHLALA--- 285
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S VRRL+ + + P SPDGK I F S R G +
Sbjct: 286 ---LSRDGNTQVYQVNADG----SGVRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQV 338
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G EG G R+T + SPDG+++A+ S +G F++ L +
Sbjct: 339 YRMPASGEEGGGAQRVTFKGSYNVSPRISPDGKYLAYISR-----TGGFKLQLQDLSNGD 393
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG + + + DG
Sbjct: 394 VTSLTDTAN---DEAPSFAANGKYILYATRVGGRAV--------------LAAVSTDGRT 436
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S + P+WGP
Sbjct: 437 RQVLSLQSGDVREPSWGP 454
>gi|108763053|ref|YP_628620.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus xanthus DK 1622]
gi|108466933|gb|ABF92118.1| tol-pal system beta propeller repeat protein TolB [Myxococcus
xanthus DK 1622]
Length = 366
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + P+VSPDGK + F +R G +Y+ +A+G G RLT D
Sbjct: 170 RLTQVPQGCFEPAVSPDGKEVAFVCSREGDPEVYVANADG---SGERRLTFFHHEDRTPK 226
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG+W+ SDR+ +Y + P+G+ LR + G +SPDG+ +V+
Sbjct: 227 WSPDGKWLVIVSDRER----KDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVY 282
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S +A I+ + + G LT D PAW P
Sbjct: 283 VSRLPDGNA-------------RIWMVAVAGGAPVALTDGKHRDDMPAWSP 320
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 412 PDISLFRF-DGSF-PSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYF--KNAFSTV 463
P++ L + G F P+ SP G +AFV P VYV N+DGS R++ F +
Sbjct: 167 PEVRLTQVPQGCFEPAVSPDGKEVAFVCSREGDPEVYVANADGSGERRLTFFHHEDRTPK 226
Query: 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
W P + +V S+ D + D + AV + G + SPDG+
Sbjct: 227 WSPDGKWLV-------IVSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREA-AWSPDGQ 278
Query: 524 WIVFRSTR-TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+V+ S G ++++ GG L T+G D M WSPDG+++AF S+R
Sbjct: 279 RLVYVSRLPDGNARIWMVAVAGGAPVAL---TDGKHRDDMPAWSPDGKYLAFVSER---- 331
Query: 583 SGSFEMYLIHPNGTGLRKL 601
G ++Y++ +G+G +L
Sbjct: 332 QGDTDVYVMRADGSGQTRL 350
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSFPSFSPKGD 431
P +SPD V + R +G+ ++ + N S ++ F + P +SP G
Sbjct: 179 FEPAVSPDGKEVAFVCSR------EGDPEVYVANADGSGERRLTFFHHEDRTPKWSPDGK 232
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQV----YFKNAFSTVWDPVREAVVYTSGGPEFASE 483
+ V +Y + DGS+ R V + + W P + +VY S P+ +
Sbjct: 233 WLVIVSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVYVSRLPDGNAR 292
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
V + A LT + P+ SPDGK++ F S R G ++Y+M A
Sbjct: 293 IWMVAVAG---------GAPVALTDGKHRDDMPAWSPDGKYLAFVSERQGDTDVYVMRA- 342
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSP 567
+G G RLT D + W+P
Sbjct: 343 --DGSGQTRLTTAKGPDWLPRWAP 364
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 28/199 (14%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS-VSPDGK-WIVFRSTRTGYKNL 537
+ + + D+ ++ D V+ T G+ + +P +SPDGK +V +T G +
Sbjct: 56 LSERAGQKDVWKVSPDGVE------TQLTRGEEDEYPGPLSPDGKSLLVITATEEGGLHR 109
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
M +G P + +W+PDG W+ SD G ++ + P
Sbjct: 110 QQMRVLPLDGKSPAVPLHPPRARARNASWAPDGTWLVAESD----AEGFSDVVRLEPREG 165
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G + G P SPDGK + F G +P E++ DGS
Sbjct: 166 GPEVRLTQVPQG-CFEPAVSPDGKEVAFVCSREG---DP-----------EVYVANADGS 210
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+RLT ED TP W P
Sbjct: 211 GERRLTFFHHEDRTPKWSP 229
>gi|187922764|ref|YP_001894406.1| translocation protein TolB [Burkholderia phytofirmans PsJN]
gi|226705872|sp|B2T077.1|TOLB_BURPP RecName: Full=Protein TolB; Flags: Precursor
gi|187713958|gb|ACD15182.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
phytofirmans PsJN]
Length = 430
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F++ + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLMGGRGVFATRLSYVIKTGGRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P SPDG+ I F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQGNTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>gi|56697941|ref|YP_168312.1| translocation protein TolB [Ruegeria pomeroyi DSS-3]
gi|67461891|sp|Q5LNU4.1|TOLB_SILPO RecName: Full=Protein TolB; Flags: Precursor
gi|56679678|gb|AAV96344.1| TolB, putative [Ruegeria pomeroyi DSS-3]
Length = 439
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +++++ +R + ++ +F+ + P + V+++
Sbjct: 210 PRFSPTGDRVLYTSYQGGFPRIHILDVGQVQQRVLQSQDGTMSFAPRFSPDGQTVLFS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ ++N+ G S RLT+ PS +PDG IVF S R+G
Sbjct: 268 ----LAQGGNTDLYAMNI--ASGQST--RLTSAPSIETAPSYAPDGSRIVFESDRSGTPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 320 LYVMSAAGGEA---TRISFGQGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRADGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGR-----------AALYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + T + D P+W P
Sbjct: 419 NLRPVRTPDGGSD--PSWSP 436
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 66/240 (27%)
Query: 480 FASESSEVDI--ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP G +++ S + G+ +
Sbjct: 173 FVSESGPKDQRRKRLAIMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRVLYTSYQGGFPRI 231
Query: 538 YIMD---------------------------------AEGG--EGYGLH-------RLTE 555
+I+D A+GG + Y ++ RLT
Sbjct: 232 HILDVGQVQQRVLQSQDGTMSFAPRFSPDGQTVLFSLAQGGNTDLYAMNIASGQSTRLTS 291
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +T +++PDG I F SDR SG+ ++Y++ G ++ S GR P +
Sbjct: 292 APSIETAPSYAPDGSRIVFESDR----SGTPQLYVMSAAGGEATRI--SFGQGRYGTPVW 345
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP G I FT Q + I ++ DGS+ +RL SF D P W P
Sbjct: 346 SPRGDLIAFT--------------KQSKGRFHIGVMRADGSE-ERLLTASFLDEGPTWSP 390
>gi|365881618|ref|ZP_09420920.1| Protein tolB precursor [Bradyrhizobium sp. ORS 375]
gi|365290190|emb|CCD93451.1| Protein tolB precursor [Bradyrhizobium sp. ORS 375]
Length = 376
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 26/221 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 149 PRFSPSSQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 205
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + P SPDG I F S R G +
Sbjct: 206 ---LQQGGNSNLFVMDLRS----RTTTRLTDTPAIDTSPCYSPDGSQICFESDRGGKPQI 258
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 259 YVMSANGGNA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 311
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
R L S P F+P+G+ ++F D GG + + T
Sbjct: 312 ERILT---SGFHNEGPTFAPNGRVLMFFRDPGGTAGPSLYT 349
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 112 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPSSQEITYMEFGQGDPRV 170
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 171 YLFNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRT 223
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG I F SD GG +P +I+ + +G +
Sbjct: 224 TTRLTDTPAI--DTSPCYSPDGSQICFESDRGG------------KP--QIYVMSANGGN 267
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 268 AQRISFGEGSYSTPVWSPR 286
>gi|103485823|ref|YP_615384.1| translocation protein TolB [Sphingopyxis alaskensis RB2256]
gi|118574599|sp|Q1GWC1.1|TOLB_SPHAL RecName: Full=Protein TolB; Flags: Precursor
gi|98975900|gb|ABF52051.1| TolB-like protein [Sphingopyxis alaskensis RB2256]
Length = 454
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEFPG------VYVVNSDGSNRRQVYFKN-AFSTVWDPVREAVVYTSG 476
P FSP +I +V + +Y V S G+ R +N F+ W P ++Y+
Sbjct: 226 PRFSPDYKKIVYVSYLNDRVRVFIYDVAS-GTQRLVTESRNPTFAPRWSPDGTQILYS-- 282
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI I+ + V RLTT + S SPDG+ IVF S R+G +
Sbjct: 283 ----MAVGGNTDIYRISANGGTPV----RLTTAPGIDVGGSFSPDGRKIVFESDRSGSQQ 334
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M+ +G R++ G WSP G+ IAF G G F + ++ P+G
Sbjct: 335 LYVMNIDGSN---QQRISFGGGRYATPEWSPRGDLIAFT----RMGGGEFRIGVMTPSGG 387
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G+R L + + P +SP+G+ I F +TP + + ++++ L G
Sbjct: 388 GVRMLT---NGWQDEAPTWSPNGRVIQFFR----------TTPGR-EGRSSLWQVDLTGV 433
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+RL + +DG+ P+WGP
Sbjct: 434 NLRRLP--TPQDGSDPSWGP 451
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 28/190 (14%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG + R TNG+ A P SPD K IV+ S ++I D G
Sbjct: 200 IKRLAIMDSDGGN--HRFITNGQALALSPRFSPDYKKIVYVSYLNDRVRVFIYDVASGT- 256
Query: 548 YGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
RL + T WSPDG I ++ G+ ++Y I NG +L + +
Sbjct: 257 ---QRLVTESRNPTFAPRWSPDGTQILYSMAV----GGNTDIYRISANGGTPVRL--TTA 307
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
G FSPDG+ IVF SD G +++ + +DGS+ +R++
Sbjct: 308 PGIDVGGSFSPDGRKIVFESDRSGSQ--------------QLYVMNIDGSNQQRISFGGG 353
Query: 667 EDGTPAWGPR 676
TP W PR
Sbjct: 354 RYATPEWSPR 363
>gi|409399650|ref|ZP_11249916.1| TolB domain-containing protein [Acidocella sp. MX-AZ02]
gi|409131183|gb|EKN00896.1| TolB domain-containing protein [Acidocella sp. MX-AZ02]
Length = 451
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 42/261 (16%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P ++P ++AFV + G G+N R VY N T + + GP F+ +
Sbjct: 221 PQYNPARQQLAFVSYRG-------GANPR-VYMFN-LQTGATQLVGGFGEMTIGPRFSPD 271
Query: 484 SSEVDIISINVDDVDGVSAVR---------RLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
+ + ++V G + V+ LT + N P SPDG IVF S R G
Sbjct: 272 GNS---LLMSVSRNGGAAIVKTSLSGGGATELTDSSSINVTPCYSPDGSQIVFNSDRDGN 328
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+ L++M+A +G G+ R++ GP WSP G+ IA+ GSG F + ++ P+
Sbjct: 329 QQLFVMNA---DGSGVKRISFGPGQYAEPVWSPRGDLIAYTFW----GSGGFSIGVMAPD 381
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
GTG R + Q P F P+G+ I+F P + H + I +D
Sbjct: 382 GTGERIISQ---GFLVESPTFCPNGRVIMFCRQ------SPTGSGHS----SNLVTIGVD 428
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + +RL P+WGP
Sbjct: 429 GFN-ERLVNTPTYASDPSWGP 448
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGY- 548
+ V D DG + + T+G N A P +P + + F S R G +Y+ + + G
Sbjct: 198 LAVMDYDGANV--QFLTDGANMALSPQYNPARQQLAFVSYRGGANPRVYMFNLQTGATQL 255
Query: 549 --GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G +T GP +SPDG + + R+ G + +G G +L S S
Sbjct: 256 VGGFGEMTIGP------RFSPDGNSLLMSVSRN----GGAAIVKTSLSGGGATELTDSSS 305
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
P +SPDG IVF SD G ++F + DGS +KR++
Sbjct: 306 INVT--PCYSPDGSQIVFNSDRDGNQ--------------QLFVMNADGSGVKRISFGPG 349
Query: 667 EDGTPAWGPR 676
+ P W PR
Sbjct: 350 QYAEPVWSPR 359
>gi|367474931|ref|ZP_09474421.1| periplasmic protein [Bradyrhizobium sp. ORS 285]
gi|365272808|emb|CCD86889.1| periplasmic protein [Bradyrhizobium sp. ORS 285]
Length = 376
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 39/258 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 149 PRFSPSSQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRIILS--- 205
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ RLT + P SPDG I F S R G +
Sbjct: 206 ---LQQGGNSNLFVMDLRS----RTTTRLTDTPAIDTSPCYSPDGSQICFESDRGGKPQI 258
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + ++ +G+G
Sbjct: 259 YVMSANGGNA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKTDGSG 311
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L S P F+P+G+ ++F D GG + ++ I + G
Sbjct: 312 ERILT---SGFHNEGPTFAPNGRVLMFFRDPGGTAGP------------SLYSIDVSGRF 356
Query: 658 LKRLTQNSFEDGTPAWGP 675
+++ F PAW P
Sbjct: 357 EQKVPTPGFAS-DPAWSP 373
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES SE + + + D DG + VR LT P SP + I + G +
Sbjct: 112 FVDESGPSERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSSQEITYMEFGQGDPRV 170
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 171 YLFNIETGQ---REIVGNFPGMSFSPRFSPDGQRIILSLQQ----GGNSNLFVMDLRSRT 223
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPDG I F SD GG +P +I+ + +G +
Sbjct: 224 TTRLTDTPAI--DTSPCYSPDGSQICFESDRGG------------KP--QIYVMSANGGN 267
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 268 AQRISFGEGSYSTPVWSPR 286
>gi|385206744|ref|ZP_10033612.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
Ch1-1]
gi|385179082|gb|EIF28358.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
Ch1-1]
Length = 430
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F++ + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLMGGRGVFATRLSYVIKTGGRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P SPDG+ I F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQGNTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>gi|304393324|ref|ZP_07375252.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp.
R2A130]
gi|303294331|gb|EFL88703.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp.
R2A130]
Length = 444
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F G VY++ + R V + FS + P + +V +
Sbjct: 216 PRFSPSRQEITYMSFAGGEPRVYLLQIETGQREVVGNFPSMTFSPRFSPDGQRIVMS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I S+++ + RLT + PS SPDG+ IVF S R G + L
Sbjct: 273 ---LQQDGNANIYSMDLRS----RSTTRLTNTPAIDTSPSFSPDGRRIVFESDRGGRQQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G+F + ++ P+G G
Sbjct: 326 YVM---GADGSSPTRISFGTGSYSTPVWSPRGDLIAFTKR----SGGNFLIGVMRPDGKG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F + G P +++ I L G
Sbjct: 379 ERILTE----GYHNEGPTWAPNGRLLMFFRETPGAGGGP-----------KLYSIDLTGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 424 NEQQVPTKTFAS-DPAWSP 441
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 26/189 (13%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+ + + D DG + R+ TNG + P SP + I + S G +Y++ E G+
Sbjct: 190 VKQLAIMDQDGFN--NRMLTNGSDLVLTPRFSPSRQEITYMSFAGGEPRVYLLQIETGQR 247
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ +S +SPDG+ I + +D G+ +Y + +L + +
Sbjct: 248 EVVGNFPSMTFS---PRFSPDGQRIVMSLQQD----GNANIYSMDLRSRSTTRLTNTPAI 300
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P FSPDG+ IVF SD GG +++ + DGS R++ +
Sbjct: 301 --DTSPSFSPDGRRIVFESDRGGRQ--------------QLYVMGADGSSPTRISFGTGS 344
Query: 668 DGTPAWGPR 676
TP W PR
Sbjct: 345 YSTPVWSPR 353
>gi|91781923|ref|YP_557129.1| translocation protein TolB [Burkholderia xenovorans LB400]
gi|118574575|sp|Q145B2.1|TOLB_BURXL RecName: Full=Protein TolB; Flags: Precursor
gi|91685877|gb|ABE29077.1| Putative periplasmic TolB protein [Burkholderia xenovorans LB400]
Length = 430
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F++ + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLMGGRGVFATRLSYVIKTGGRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P SPDG+ I F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQGNTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>gi|384085172|ref|ZP_09996347.1| tolB protein [Acidithiobacillus thiooxidans ATCC 19377]
Length = 422
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 48/263 (18%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKN------AFSTVWDPVREAVVY 473
P++SP+G ++A+V + +Y+ N R QV + AFS + A V+
Sbjct: 198 PAWSPQGRQLAYVTYRHRHSVIYIQNLANGQRHQVPDQGTALSAPAFSPNGQYLAFAKVW 257
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
G E E+ + + LT +G N PS SP G +VF S R G
Sbjct: 258 ERGRTELVRENLQTGHEQV-------------LTRSGTVNTSPSWSPGGHHLVFVSNRQG 304
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y M G + RL+ + +++PDG WIAF + G + + P
Sbjct: 305 SAQIYQMRINGSH---IQRLSYSGGYNVSPSYAPDGRWIAFV----HAYRGVLSLAEMRP 357
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+G+G++ L G+ HP F+ DG+ IVF + GG + ++ +
Sbjct: 358 DGSGVQVLYDGGNC---EHPSFARDGRMIVFATHRGGQKV--------------LGEVAI 400
Query: 654 DGSDLKRLTQNSFEDGTPAWGPR 676
+G L L+ + + PAW PR
Sbjct: 401 NGKGLHFLS-IAGQTNEPAWAPR 422
>gi|338213454|ref|YP_004657509.1| hypothetical protein [Runella slithyformis DSM 19594]
gi|336307275|gb|AEI50377.1| WD40-like beta Propeller containing protein [Runella slithyformis
DSM 19594]
Length = 350
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 34/203 (16%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D++G V++LT +A ++SP G IVF STR G +LY MD +G
Sbjct: 134 DSYDIFVSDLNG-KIVKQLTAEKGYDAEATISPKGDKIVFTSTRDGDLDLYTMDIDGKN- 191
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP----------------GSGSFEMYLI 591
+ R+T D +SPDG+ + F + R E+Y
Sbjct: 192 --VKRVTNLLGYDGGAFFSPDGKKLVFRASRPKTDEEVAEYKKLLSLGLVAPTDMEIYTC 249
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG-EIFK 650
+ +G+ LR++ + G A A PYF+P G I+F+S++ H + Y +++
Sbjct: 250 NVDGSDLRQVTKLGKANWA--PYFTPKGDKIIFSSNH-----------HSQRGYDFQLYT 296
Query: 651 IKLDGSDLKRLTQNSFEDGTPAW 673
I LDG+ ++R+T NS + P +
Sbjct: 297 INLDGTGVERVTNNSIFNAFPMF 319
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 425 SFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV-----YFKNAFSTVWDPVREAVVYTS 475
+ SPKGD+I F +Y ++ DG N ++V Y AF + P + +V+ +
Sbjct: 162 TISPKGDKIVFTSTRDGDLDLYTMDIDGKNVKRVTNLLGYDGGAF---FSPDGKKLVFRA 218
Query: 476 GGPEFASESSE--------------VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521
P+ E +E ++I + NVD D +R++T GK N P +P
Sbjct: 219 SRPKTDEEVAEYKKLLSLGLVAPTDMEIYTCNVDGSD----LRQVTKLGKANWAPYFTPK 274
Query: 522 GKWIVFRS---TRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
G I+F S ++ GY LY ++ +G G+ R+T + +S DG+ + F+S+
Sbjct: 275 GDKIIFSSNHHSQRGYDFQLYTINLDGT---GVERVTNNSIFNAFPMFSHDGKKLIFSSN 331
Query: 578 RDN-PGSGSFEMYL 590
R+N PGS +Y+
Sbjct: 332 RNNAPGSRDTNLYI 345
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 35/182 (19%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +V+TS + ++D+ ++ D+DG + V+R+T + SPDGK +
Sbjct: 165 PKGDKIVFTS------TRDGDLDLYTM---DIDGKN-VKRVTNLLGYDGGAFFSPDGKKL 214
Query: 526 VFRSTR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
VFR++R YK L Y + +G + + +L + W+ +
Sbjct: 215 VFRASRPKTDEEVAEYKKLLSLGLVAPTDMEIYTCNVDGSDLRQVTKLGKANWAPY---F 271
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
+P G+ I F+S+ + F++Y I+ +GTG+ + + + S A P FS DGK ++F+
Sbjct: 272 TPKGDKIIFSSNHHSQRGYDFQLYTINLDGTGVER-VTNNSIFNA-FPMFSHDGKKLIFS 329
Query: 626 SD 627
S+
Sbjct: 330 SN 331
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 116/299 (38%), Gaps = 58/299 (19%)
Query: 407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDP 466
IKS L + LF SF +FS G+ + G + + YF +F+ +
Sbjct: 3 IKSFLLILCLF----SFTAFSQSGEEKHLKNVKQLTF----GGDNAEAYF--SFNDQY-- 50
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
V + S P++ + ++ + +N + ++T P K I+
Sbjct: 51 ----VSFQSNNPKWGLQCDQIFYLDVNKGLANPDERPPFISTGKGRTTCSYFMPGDKQIL 106
Query: 527 FRSTRTG----------YKNLYI--------MDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
F ST G Y N Y+ + G + +LT D SP
Sbjct: 107 FASTHVGNDSCPPPVKAYLNKYLWAVYDSYDIFVSDLNGKIVKQLTAEKGYDAEATISPK 166
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF---- 624
G+ I F S RD G ++Y + +G ++++ + G +FSPDGK +VF
Sbjct: 167 GDKIVFTSTRD----GDLDLYTMDIDGKNVKRV--TNLLGYDGGAFFSPDGKKLVFRASR 220
Query: 625 ------TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
++Y + + + P EI+ +DGSDL+++T+ G W P F
Sbjct: 221 PKTDEEVAEYKKLLSLGLVAPTDM----EIYTCNVDGSDLRQVTKL----GKANWAPYF 271
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 441 VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y N DGS+ RQV K ++ + P + ++++S + + + +IN+D
Sbjct: 246 IYTCNVDGSDLRQVTKLGKANWAPYFTPKGDKIIFSSN--HHSQRGYDFQLYTINLDG-- 301
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-----KNLYIMD 541
+ V R+T N NAFP S DGK ++F S R NLYI D
Sbjct: 302 --TGVERVTNNSIFNAFPMFSHDGKKLIFSSNRNNAPGSRDTNLYIAD 347
>gi|374312156|ref|YP_005058586.1| transcriptional regulator domain-containing protein [Granulicella
mallensis MP5ACTX8]
gi|358754166|gb|AEU37556.1| transcriptional regulator domain-containing protein [Granulicella
mallensis MP5ACTX8]
Length = 752
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 106/478 (22%), Positives = 174/478 (36%), Gaps = 86/478 (17%)
Query: 221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW--PCWVDE- 277
P SP+G A + + + G D + M D R K+ + G P W
Sbjct: 216 PTFSPNGNSLAYSWHSDAGQDQAIYMQKVD--------SDDREKLSDGGKSFSPAWSPRG 267
Query: 278 STLFFHRKSEEDDW--ISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFI 335
+ + R +E+ W I V KV P T ++ H + ++
Sbjct: 268 EEIAYLRATEDPKWLEIEVAKVQRPHTA----RHLAFINNLKSAFHDVPTLNWSPDGSWL 323
Query: 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395
+ H+EL L + LT + +N SP + + + RG S+
Sbjct: 324 VTTEKEDADESSHLELVSLENGEKQALTHPPALSVD-VNAVFSPQGDWIAFVRARGPSSA 382
Query: 396 E-------DGNNQLLLENIKS----------------------------------PLPDI 414
E G +++L NI S P +
Sbjct: 383 EIHVMPAHGGPDRVLPFNIHSINGLTWSADGQSLLVASSRALSVGNLWKLSLNGDPPVAL 442
Query: 415 SLFRFDGSFPSFSPKGDRIAFVEF---PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV 471
S P SPKG R+A+++ ++ +++DG +++ + F + A
Sbjct: 443 STLPAHTEDPVVSPKGHRLAYIDLLRNGSLWRMSTDGHGKQEQLIASRF------IDSAP 496
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
Y+ G E A ES I V DG R G N + P SPDGK + F S
Sbjct: 497 DYSPDGSEIAFESDRTGASEIWVCKNDGTQCKRLTNIFGPNTSSPRWSPDGKLLAFNSGF 556
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G +++++A GG + + + NWS DG+ + F+S+R +G FE++
Sbjct: 557 HGRSAIFVVNASGGIPLLVTTGAFEAADNLIPNWSRDGQSLYFSSNR----TGRFEVWKT 612
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD----------YGGISAEPISTP 639
NG R++ Q G S DGKS+ + D G A+P++ P
Sbjct: 613 KVNGDEERQITQHGGYNGME----SADGKSLYYIQDTDKTTIWRIPLNGGEAQPVAGP 666
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 38/225 (16%)
Query: 422 SFPSFSPKGDRIAFV------EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYT 474
S+P+FSP G+ +A+ + +Y+ D +R ++ +FS W P E + Y
Sbjct: 214 SWPTFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLSDGGKSFSPAWSPRGEEIAYL 273
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSV-----SPDGKWIVFR 528
+ + + I V V R L N +AF V SPDG W+V
Sbjct: 274 RA-------TEDPKWLEIEVAKVQRPHTARHLAFINNLKSAFHDVPTLNWSPDGSWLVTT 326
Query: 529 STRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSG 584
+ +L ++ E GE LT P N +SP G+WIAF R G
Sbjct: 327 EKEDADESSHLELVSLENGEK---QALTHPPALSVDVNAVFSPQGDWIAFVRAR---GPS 380
Query: 585 SFEMYLIHPNGTGLRKL---IQSGSAGRANHPYFSPDGKSIVFTS 626
S E++++ +G R L I S N +S DG+S++ S
Sbjct: 381 SAEIHVMPAHGGPDRVLPFNIHS-----INGLTWSADGQSLLVAS 420
>gi|209886402|ref|YP_002290259.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
gi|337740061|ref|YP_004631789.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
gi|386029078|ref|YP_005949853.1| translocation protein TolB [Oligotropha carboxidovorans OM4]
gi|209874598|gb|ACI94394.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha
carboxidovorans OM5]
gi|336094146|gb|AEI01972.1| translocation protein TolB [Oligotropha carboxidovorans OM4]
gi|336097725|gb|AEI05548.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
Length = 449
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYT--S 475
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 224 PRFSPTTQEITYMEFGGGDPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQRIIMSLQQ 283
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
GG +S + ++ + + RLT + PS +PD I F S R G
Sbjct: 284 GG------NSNLYVMDLRS------KSTTRLTDTPAIDTSPSYAPDSSRICFESDRGGKP 331
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+M A GG R++ G S + WSP G++IAF G G F + ++ P+G
Sbjct: 332 QIYVMGANGGAA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDG 384
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
+G R L ++G N P F+P+G+ ++F D GG
Sbjct: 385 SGERIL----TSGYHNEGPTFAPNGRVLMFFRDLGG 416
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 35/221 (15%)
Query: 432 RIAFVEFPG--------VYVVNSDGSNRRQVYFKNAFSTV----WDPVREAVVYTSGGPE 479
R+ FV+ G + +++ DG+N R Y V + P + + Y E
Sbjct: 184 RVVFVDETGPKDRRVKRLAMMDQDGANVR--YLTRGADLVLTPRFSPTTQEITYM----E 237
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLY 538
F V + ++ + R + N +F P SPDG+ I+ + G NLY
Sbjct: 238 FGGGDPRVYLFNVE-------TGQREIVGNFPGMSFAPRFSPDGQRIIMSLQQGGNSNLY 290
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+MD RLT+ P DT +++PD I F SDR G ++Y++ NG
Sbjct: 291 VMDLRSKS---TTRLTDTPAIDTSPSYAPDSSRICFESDR----GGKPQIYVMGANGGAA 343
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+++ S G + P +SP G I FT GG A I P
Sbjct: 344 QRI--SFGDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKP 382
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 42/186 (22%)
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS---------PLPDISLFRFDGSFPS 425
P SPD R+ S ++ GN+ L + +++S P D S PS
Sbjct: 268 PRFSPDGQRIIM------SLQQGGNSNLYVMDLRSKSTTRLTDTPAIDTS--------PS 313
Query: 426 FSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYT-SGGP 478
++P RI F P +YV+ ++G +++ F + ++ST VW P + + +T GG
Sbjct: 314 YAPDSSRICFESDRGGKPQIYVMGANGGAAQRISFGDGSYSTPVWSPRGDYIAFTKQGGG 373
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+FA I I D G R+ T+G +N P+ +P+G+ ++F G NLY
Sbjct: 374 QFA--------IGIMKPDGSG----ERILTSGYHNEGPTFAPNGRVLMFFRDLGGGPNLY 421
Query: 539 IMDAEG 544
+D G
Sbjct: 422 TVDISG 427
>gi|389693712|ref|ZP_10181806.1| tol-pal system beta propeller repeat protein TolB [Microvirga sp.
WSM3557]
gi|388587098|gb|EIM27391.1| tol-pal system beta propeller repeat protein TolB [Microvirga sp.
WSM3557]
Length = 444
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT+ + PS SPDG IVF S R G + +Y M+A+G R++ G S +
Sbjct: 288 RLTSTAAIDTSPSFSPDGSQIVFESDRGGKQQIYAMNADGSN---QRRISFGDGSYSQPA 344
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIV 623
WSP G++IAF R +G F + ++ P+G+G R L + G N P ++P+G+ I+
Sbjct: 345 WSPRGDYIAFTKQR----AGGFAIGIMKPDGSGERILTE----GFHNESPTWAPNGQYIL 396
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F D GG Q G+++ + + G + + SF P W P
Sbjct: 397 FFRDPGG------------QAGGKLYMVDITGRVEQPVPTPSFAS-DPTWSP 435
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGL 550
+ + D DG + VR LT + P SP + I + + G + + +++ E G
Sbjct: 187 LAIMDQDGAN-VRYLTQGDTSVVTPRYSPATQDITYSAQAEGQQPRVQVINLETGT---- 241
Query: 551 HRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
R G + D + ++PDG+ I S + + F M L N T L + +A
Sbjct: 242 -RQVLGNFPDMASSPRFAPDGQRIVM-SLQQGGNANIFMMDLGSRNTTRL-----TSTAA 294
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
P FSPDG IVF SD GG +I+ + DGS+ +R+ SF D
Sbjct: 295 IDTSPSFSPDGSQIVFESDRGGKQ--------------QIYAMNADGSNQRRI---SFGD 337
Query: 669 GT---PAWGPR 676
G+ PAW PR
Sbjct: 338 GSYSQPAWSPR 348
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--KSPLPDISLFRFDGSFPSFSPKGD 431
+P +PD R+ S ++ GN + + ++ ++ S D S PSFSP G
Sbjct: 254 SPRFAPDGQRIVM------SLQQGGNANIFMMDLGSRNTTRLTSTAAIDTS-PSFSPDGS 306
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
+I F G +Y +N+DGSN+R++ F + + W P + + +T
Sbjct: 307 QIVFESDRGGKQQIYAMNADGSNQRRISFGDGSYSQPAWSPRGDYIAFT---------KQ 357
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK--NLYIMDAE 543
+I + DG R+ T G +N P+ +P+G++I+F G LY++D
Sbjct: 358 RAGGFAIGIMKPDGSG--ERILTEGFHNESPTWAPNGQYILFFRDPGGQAGGKLYMVDIT 415
Query: 544 G 544
G
Sbjct: 416 G 416
>gi|372277900|ref|ZP_09513936.1| translocation protein TolB [Pantoea sp. SL1_M5]
gi|390435900|ref|ZP_10224438.1| translocation protein TolB [Pantoea agglomerans IG1]
Length = 431
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQIASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQITDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGLNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G G+ + DGKS+V S GG + K L+ ++ LT
Sbjct: 330 WEG--GQNQDADVATDGKSMVMISTNGGAQ--------------HVAKQDLETGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|269139918|ref|YP_003296619.1| translocation protein [Edwardsiella tarda EIB202]
gi|387868440|ref|YP_005699909.1| tolB protein [Edwardsiella tarda FL6-60]
gi|267985579|gb|ACY85408.1| translocation protein [Edwardsiella tarda EIB202]
gi|304559753|gb|ADM42417.1| tolB protein precursor [Edwardsiella tarda FL6-60]
Length = 430
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSAEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAIRQVASFPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG ++L
Sbjct: 276 ASG---AIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQIYKMNINGGAAQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + SPDGK +V S G I K+ L G++ ++
Sbjct: 329 WEGS--QNQDAEVSPDGKFLVMVSSNAGAQ--------------HIAKLDL-GTNATQVL 371
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 372 TDTFLDETPSIAP 384
>gi|260428940|ref|ZP_05782917.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp.
SE45]
gi|260419563|gb|EEX12816.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp.
SE45]
Length = 440
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + + P ++V+N R + +F+ + P VVY+
Sbjct: 212 PRFSPNGDRVLYTSYETGEPQIHVLNVGAVQSRILRSAAGVMSFAPRFSPDGSRVVYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ S DI ++V A +LT PS SPDG IVF S R+G +
Sbjct: 270 ----VTQGSNTDIYMMDVAS----GASTQLTATPAIETAPSFSPDGSRIVFESDRSGTQQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 322 LYVMPAGGGEA---TRISFGQGRYGTPVWSPRGDMIAFTKQHQ----GRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++F+ + G Q ++ + + G
Sbjct: 375 EERLLTAS---PLDEGPTWAPNGRVLMFSRETLGA-----------QGTSSLYTVDVAGR 420
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
L R+ T D P+WGP
Sbjct: 421 KLTRVRTPAGASD--PSWGP 438
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 25/199 (12%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES E + + D DG + V+ LT + P SP+G +++ S TG +
Sbjct: 175 FVSESGPKEQRAKRLAIMDYDGAN-VQYLTDSRSIVLAPRFSPNGDRVLYTSYETGEPQI 233
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
++++ G + R G S +SPDG + ++ + GS + ++Y++
Sbjct: 234 HVLNV-GAVQSRILRSAAGVMS-FAPRFSPDGSRVVYSVTQ---GSNT-DIYMMDVASGA 287
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + A P FSPDG IVF SD G +++ + G +
Sbjct: 288 STQLTATPAIETA--PSFSPDGSRIVFESDRSGTQ--------------QLYVMPAGGGE 331
Query: 658 LKRLTQNSFEDGTPAWGPR 676
R++ GTP W PR
Sbjct: 332 ATRISFGQGRYGTPVWSPR 350
>gi|238495088|ref|XP_002378780.1| hypothetical protein AFLA_060360 [Aspergillus flavus NRRL3357]
gi|220695430|gb|EED51773.1| hypothetical protein AFLA_060360 [Aspergillus flavus NRRL3357]
Length = 188
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 18/177 (10%)
Query: 509 NGKNNAFPSVSPDGKWIVFR----------STRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
N N FPS SPDG IVFR +++ G + L++ Y + LT W
Sbjct: 16 NTLNTGFPSFSPDGTKIVFRVWGADAEDGDTSQLGLRILHLDQVTANGTYPVTVLTN--W 73
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
DT+ ++SPDG I F R GS ++E+ I P+G+ L+ L + S H +S D
Sbjct: 74 WDTLPSFSPDGTKIVFM--RRVSGS-NYEVCTIAPDGSDLQVL--TSSEADDAHAVWSHD 128
Query: 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G+ + T +YG +E + +QPYG+I + DG + + LT + +ED PA+ P
Sbjct: 129 GRIMYSTGEYG-FQSECALYDNTFQPYGQINIMDADGGNKRALTNSLWEDSMPAYVP 184
>gi|421760295|ref|ZP_16197114.1| translocation protein TolB [Bartonella bacilliformis INS]
gi|411176012|gb|EKS46033.1| translocation protein TolB [Bartonella bacilliformis INS]
Length = 439
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK IVF S R G +YIMDA+G HR++ S + WSP G++IAF
Sbjct: 299 SYSPDGKQIVFSSDRDGKPQIYIMDADGSNP---HRISANEGSYSTPTWSPRGDYIAFTK 355
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
G F + ++HPNG G R L + G N P ++P+G+ ++F A
Sbjct: 356 Q----SQGQFSIGVMHPNGQGERLL----TTGFHNEGPTWAPNGRVLMFFRQNANQGA-- 405
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
+I+ I + G + +RL T N+ D PAW P
Sbjct: 406 -----------QIYTIDITGRNERRLPTPNNASD--PAWSP 433
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG+ + + +DN GS +Y + + +L + + + +SPDGK IVF
Sbjct: 255 FSPDGQKVIMSLLKDN---GSANLYTMDLRTRTITRLTTTRAIDTS--ASYSPDGKQIVF 309
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+SD G +P +I+ + DGS+ R++ N TP W PR
Sbjct: 310 SSDRDG------------KP--QIYIMDADGSNPHRISANEGSYSTPTWSPR 347
>gi|354722597|ref|ZP_09036812.1| translocation protein TolB [Enterobacter mori LMG 25706]
Length = 430
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T WSPD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWSPDSQHLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG 354
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWSPDSQHLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK +V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|94268877|ref|ZP_01291310.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1]
gi|93451428|gb|EAT02274.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1]
Length = 437
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 27/257 (10%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P F+P G +A+ + N ++ R++ A S W + + G +
Sbjct: 207 PRFTPDGRGLAYTSYHRGNA-NLYQTDIRELKTTRAISR-WVGLNITPSWPPAGDQMVLT 264
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
S D + + D G +RRLT N PS +PDG+ + F S R+G +YIMD
Sbjct: 265 LSRDDNPDLYLTDTQG-QIIRRLTHGEGVNVSPSFAPDGRRLAFVSDRSGTPQIYIMDLR 323
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
+ RLT +T +WSPDG WIA+ + G +++I P G ++ +
Sbjct: 324 T---MAVQRLTFQGNDNTTPSWSPDGRWIAYTGRHE----GVLHIFIIRPEGGPPIQVTR 376
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-T 662
S G P +SPD + +VF+ H+++ ++ I L+G +L+ L +
Sbjct: 377 SW--GHHETPSWSPDSRQLVFS-----------RLRHEHE---QLCTILLNGRNLRVLFS 420
Query: 663 QNSFEDGTPAWGPRFIR 679
P W PR R
Sbjct: 421 DEPGNHSMPQWSPRLQR 437
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 34/248 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
RIAFV +Y+ + G + R+V + + A +T G A S
Sbjct: 171 RIAFVSDASGDKEIYLADILGDDIRRVTYHQDLAV-------APRFTPDGRGLAYTSYHR 223
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
++ D+ + R ++ N PS P G +V +R +LY+ D +G
Sbjct: 224 GNANLYQTDIRELKTTRAISRWVGLNITPSWPPAGDQMVLTLSRDDNPDLYLTDTQG--- 280
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ RLT G + +++PDG +AF SDR SG+ ++Y++ +++L G+
Sbjct: 281 QIIRRLTHGEGVNVSPSFAPDGRRLAFVSDR----SGTPQIYIMDLRTMAVQRLTFQGND 336
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P +SPDG+ I +T + G+ IF I+ +G ++T++
Sbjct: 337 NTT--PSWSPDGRWIAYTGRHEGVL--------------HIFIIRPEGGPPIQVTRSWGH 380
Query: 668 DGTPAWGP 675
TP+W P
Sbjct: 381 HETPSWSP 388
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 40/255 (15%)
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--FPSFSPKGDR 432
P +PD + Y ++ GN L +I+ ++ R+ G PS+ P GD+
Sbjct: 207 PRFTPDGRGLAY------TSYHRGNANLYQTDIRELKTTRAISRWVGLNITPSWPPAGDQ 260
Query: 433 IAFV----EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
+ + P +Y+ ++ G R++ T + V + + G A S
Sbjct: 261 MVLTLSRDDNPDLYLTDTQGQIIRRL-------THGEGVNVSPSFAPDGRRLAFVSDRSG 313
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG--- 545
I + D+ + AV+RLT G +N PS SPDG+WI + G +++I+ EGG
Sbjct: 314 TPQIYIMDLRTM-AVQRLTFQGNDNTTPSWSPDGRWIAYTGRHEGVLHIFIIRPEGGPPI 372
Query: 546 ---EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+G H E P +WSPD + F+ R ++ I NG LR L
Sbjct: 373 QVTRSWGHH---ETP------SWSPDSRQLVFSRLRHE----HEQLCTILLNGRNLRVLF 419
Query: 603 QSGSAGRANHPYFSP 617
S G + P +SP
Sbjct: 420 -SDEPGNHSMPQWSP 433
>gi|443243686|ref|YP_007376911.1| putative periplasmic component of the Tol biopolymer transport
system [Nonlabens dokdonensis DSW-6]
gi|442801085|gb|AGC76890.1| putative periplasmic component of the Tol biopolymer transport
system [Nonlabens dokdonensis DSW-6]
Length = 369
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D+DG + +LT +A P+VSP G IVF S R+G LY M+ +G +
Sbjct: 154 DSYDIFVADLDG-NITAQLTDEKGYDAEPTVSPQGDKIVFTSDRSGDLELYTMNIDGSD- 211
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T D +SPDG + F S R D G E+Y+
Sbjct: 212 --VKQITYELGYDGGAFFSPDGSQLIFRSSRPKTETEIKEYKDLLAVGLVQPTEMELYIC 269
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ LR+L Q G+A + P+F PDGK ++F+S++ P + ++ I
Sbjct: 270 NADGSDLRQLTQLGNANWS--PFFLPDGKRVLFSSNFEAERGFPFN----------LYMI 317
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
DG+ L+R+T D P +
Sbjct: 318 NTDGTGLERITHGETFDAFPVF 339
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGG 477
P+ SP+GD+I F +Y +N DGS+ +Q+ ++ + + P +++ S
Sbjct: 181 PTVSPQGDKIVFTSDRSGDLELYTMNIDGSDVKQITYELGYDGGAFFSPDGSQLIFRSSR 240
Query: 478 PEFASESSEV-DIISIN----------VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
P+ +E E D++++ + + DG S +R+LT G N P PDGK ++
Sbjct: 241 PKTETEIKEYKDLLAVGLVQPTEMELYICNADG-SDLRQLTQLGNANWSPFFLPDGKRVL 299
Query: 527 FRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
F S + NLY+++ +G GL R+T G D +S +G+++AF+S+R+N G
Sbjct: 300 FSSNFEAERGFPFNLYMINTDGT---GLERITHGETFDAFPVFSNNGKYLAFSSNRNNGG 356
Query: 583 SGSFEMYL 590
+++
Sbjct: 357 GRDTNLFI 364
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 26/138 (18%)
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRA 610
+LT+ D SP G+ I F SDR SG E+Y ++ +G+ ++++ + G G A
Sbjct: 170 QLTDEKGYDAEPTVSPQGDKIVFTSDR----SGDLELYTMNIDGSDVKQITYELGYDGGA 225
Query: 611 NHPYFSPDGKSIVFTS----------DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
+FSPDG ++F S +Y + A + P + E++ DGSDL++
Sbjct: 226 ---FFSPDGSQLIFRSSRPKTETEIKEYKDLLAVGLVQPTEM----ELYICNADGSDLRQ 278
Query: 661 LTQNSFEDGTPAWGPRFI 678
LTQ G W P F+
Sbjct: 279 LTQL----GNANWSPFFL 292
>gi|121601818|ref|YP_988482.1| translocation protein TolB [Bartonella bacilliformis KC583]
gi|120613995|gb|ABM44596.1| Tol-Pal system beta propeller repeat protein TolB [Bartonella
bacilliformis KC583]
Length = 442
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK IVF S R G +YIMDA+G HR++ S + WSP G++IAF
Sbjct: 302 SYSPDGKQIVFSSDRDGKPQIYIMDADGSNP---HRISANEGSYSTPTWSPRGDYIAFTK 358
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
G F + ++HPNG G R L + G N P ++P+G+ ++F A
Sbjct: 359 Q----SQGQFSIGVMHPNGQGERLL----TTGFHNEGPTWAPNGRVLMFFRQNANQGA-- 408
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
+I+ I + G + +RL T N+ D PAW P
Sbjct: 409 -----------QIYTIDITGRNERRLPTPNNASD--PAWSP 436
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG+ + + +DN GS +Y + + +L + + + +SPDGK IVF
Sbjct: 258 FSPDGQKVIMSLLKDN---GSANLYTMDLRTRTITRLTTTRAIDTS--ASYSPDGKQIVF 312
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+SD G +P +I+ + DGS+ R++ N TP W PR
Sbjct: 313 SSDRDG------------KP--QIYIMDADGSNPHRISANEGSYSTPTWSPR 350
>gi|383934638|ref|ZP_09988078.1| hypothetical protein RNAN_1140 [Rheinheimera nanhaiensis E407-8]
gi|383704173|dbj|GAB58169.1| hypothetical protein RNAN_1140 [Rheinheimera nanhaiensis E407-8]
Length = 360
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 51/250 (20%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTS-- 475
P++S G +AF +Y++ +DGS R++ + T W P A+ Y +
Sbjct: 62 PAWSADGSELAFSSVRDGQSAIYLMQADGSQLRRLTPSPLWQTAPAWSPDGTAIAYLARD 121
Query: 476 ------------------------------GGPEFASESSEVDIISINVDDVDGVSAVRR 505
P ++++ ++ + N D V V+R
Sbjct: 122 NSKTGVELHLVQLATGETKVLVADGLEKGPDAPVWSADGKQLVFLGANADGKADVWLVQR 181
Query: 506 ---------LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
T+ +N A P++SPDG+++ + + G+ L+ D + GE L +
Sbjct: 182 DGSGLKNISEQTSKRNKAHPAISPDGRYVAYVADMRGHLALFRTDLQTGESVNL--TADK 239
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
P + WS DG + FAS RD+PG ++++++ +G+ + L Q +P++S
Sbjct: 240 PAAYETPRWSADGRQLLFASSRDDPGLTRMDIFVMNADGSAVTNLSQ--HPHEDYNPHWS 297
Query: 617 PDGKSIVFTS 626
DGK ++FTS
Sbjct: 298 ADGKQVLFTS 307
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 107/298 (35%), Gaps = 99/298 (33%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
S+ + LT+ N P+ S DG + F S R G +Y+M A+G + L RLT P
Sbjct: 47 SSEQALTSGSSVNTQPAWSADGSELAFSSVRDGQSAIYLMQADGSQ---LRRLTPSPLWQ 103
Query: 561 TMCNWSPDGEWIAFASDRDNP--------------------------------------- 581
T WSPDG IA+ + RDN
Sbjct: 104 TAPAWSPDGTAIAYLA-RDNSKTGVELHLVQLATGETKVLVADGLEKGPDAPVWSADGKQ 162
Query: 582 -------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA- 633
G +++L+ +G+GL+ + + S HP SPDG+ + + +D G A
Sbjct: 163 LVFLGANADGKADVWLVQRDGSGLKNISEQTSKRNKAHPAISPDGRYVAYVADMRGHLAL 222
Query: 634 --------EPIS----TPHQYQ----------------------PYGEIFKIKLDGSDLK 659
E ++ P Y+ +IF + DGS +
Sbjct: 223 FRTDLQTGESVNLTADKPAAYETPRWSADGRQLLFASSRDDPGLTRMDIFVMNADGSAVT 282
Query: 660 RLTQNSFEDGTPAW--------------GPRFIRPVDVEEVKNEQCAFEDCHWLNETP 703
L+Q+ ED P W G I D+ + + E+ + H +++ P
Sbjct: 283 NLSQHPHEDYNPHWSADGKQVLFTSLRTGTAQIYRYDMAKQRAERLSVNQSHDMDQVP 340
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+C +P + +AF S RD G +YL G+ + L S P +S DG
Sbjct: 20 LCA-TPQQQGLAFVSIRD----GHAHIYL--RQGSSEQALTSGSSVN--TQPAWSADGSE 70
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ F+S G SA I+ ++ DGS L+RLT + PAW P
Sbjct: 71 LAFSSVRDGQSA--------------IYLMQADGSQLRRLTPSPLWQTAPAWSP 110
>gi|322418108|ref|YP_004197331.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter sp. M18]
gi|320124495|gb|ADW12055.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp.
M18]
Length = 406
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 117/265 (44%), Gaps = 42/265 (15%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
QR+T G P +P + I + ++ ELF ++ R S +
Sbjct: 170 QRLTNNGSINLYPDFAPSGKELIYTSYKKGNPDLYRRELFTGLE------ARISSRSGLN 223
Query: 373 LNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFS 427
SPD SRV + G++ DG L K+ DIS PS+S
Sbjct: 224 AMGVFSPDGSRVALVLSKDGNSEVYQIARDGKEVARL--TKNHAIDIS--------PSWS 273
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFA 481
P G R+AFV P ++V++++G N R++ A++ W P + +VY A
Sbjct: 274 PDGSRVAFVSDRLGKPQLFVMDANGGNVRRLTTSGAYNVTPRWSPKGDRIVY-------A 326
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
+ I +IN D S +LT+ G +N P SPDG++IVF STR G + LY+M
Sbjct: 327 RKEGGFQIYAINPDG----SQDTQLTSAG-SNEHPRYSPDGRFIVFSSTRDGGEGLYLMR 381
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWS 566
A +G G R++ +T WS
Sbjct: 382 A---DGTGQTRISPNKAQNTHPTWS 403
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 61/209 (29%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
R+++ NA SPDG + ++ G +Y + +G E + RLT+ D +
Sbjct: 215 RISSRSGLNAMGVFSPDGSRVALVLSKDGNSEVYQIARDGKE---VARLTKNHAIDISPS 271
Query: 565 WSPDGEWIAFASDR----------DNPGS-----------------------------GS 585
WSPDG +AF SDR N G+ G
Sbjct: 272 WSPDGSRVAFVSDRLGKPQLFVMDANGGNVRRLTTSGAYNVTPRWSPKGDRIVYARKEGG 331
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
F++Y I+P+G+ + Q SAG HP +SPDG+ IVF+S G
Sbjct: 332 FQIYAINPDGS---QDTQLTSAGSNEHPRYSPDGRFIVFSSTRDG--------------- 373
Query: 646 GE-IFKIKLDGSDLKRLTQNSFEDGTPAW 673
GE ++ ++ DG+ R++ N ++ P W
Sbjct: 374 GEGLYLMRADGTGQTRISPNKAQNTHPTW 402
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 477 GPEFASESSEVDIISINVD----DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
GP F + + V IS N + D DG + +RLT NG N +P +P GK +++ S +
Sbjct: 141 GP-FTGKIAYVSKISGNKEIFLMDYDGRNP-QRLTNNGSINLYPDFAPSGKELIYTSYKK 198
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G +LY + G R++ + M +SPDG +A +D G+ E+Y I
Sbjct: 199 GNPDLYRRELFTGL---EARISSRSGLNAMGVFSPDGSRVALVLSKD----GNSEVYQIA 251
Query: 593 PNGTGLRKLIQSGSAGRANH-----PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
+G + +L + NH P +SPDG + F SD G +P +
Sbjct: 252 RDGKEVARLTK-------NHAIDISPSWSPDGSRVAFVSDRLG------------KP--Q 290
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPV 681
+F + +G +++RLT + + TP W P+ R V
Sbjct: 291 LFVMDANGGNVRRLTTSGAYNVTPRWSPKGDRIV 324
>gi|375111401|ref|ZP_09757611.1| peptidase S41 [Alishewanella jeotgali KCTC 22429]
gi|374568577|gb|EHR39750.1| peptidase S41 [Alishewanella jeotgali KCTC 22429]
Length = 1082
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
S+ R+LT + P SPDGKWI F ++ ++Y+M GG RLT P +D
Sbjct: 54 SSPRQLTNHPAAEFAPKFSPDGKWIAFSASYDNNTDVYLMPVSGGPA---QRLTWHPGAD 110
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T+ WSPDG + FAS+R+ S S ++Y + G KL+Q+ A S DGK
Sbjct: 111 TVNGWSPDGRKVLFASNREVANSRSNQLYQVAVTGGYEEKLMQA----VAFEGQLSADGK 166
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + + S H+ I+ + L+ + L+++ Q + + P W
Sbjct: 167 KLAYRPNNMAYSGSSGWRLHRGGSTPPIWILDLEQAQLEKVPQPNANNLNPFW 219
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G +LT P ++ +SPDG+WIAF++ DN + ++YL+ +G ++L
Sbjct: 52 DGSSPRQLTNHPAAEFAPKFSPDGKWIAFSASYDN----NTDVYLMPVSGGPAQRLTWHP 107
Query: 606 SAGRANHPYFSPDGKSIVFTSD 627
A N +SPDG+ ++F S+
Sbjct: 108 GADTVNG--WSPDGRKVLFASN 127
>gi|383784514|ref|YP_005469084.1| TolB protein [Leptospirillum ferrooxidans C2-3]
gi|383083427|dbj|BAM06954.1| putative TolB protein [Leptospirillum ferrooxidans C2-3]
Length = 452
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + NN PS SP G I F S R G+ +++MD++G +HR+T + +
Sbjct: 303 RLTFSRSNNLSPSWSPSGNQIAFVSDRDGHPQIFVMDSDGTN---VHRITYNGFYNVSPA 359
Query: 565 WSPDGEWIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
W P G+ +AF +DR P ++ L P+G+ R + + G+ + P +SPDG+SI
Sbjct: 360 WGPSGDLVAFVCMNDRHRP-----KICLTTPDGS--RSIQITHGRGQDDSPDWSPDGRSI 412
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+++ HQ + I K+ LDGS R+ + TP W
Sbjct: 413 IYS--------------HQVRGKSVIMKMFLDGSHTHRIGTFPRDVITPMWA 450
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 44/270 (16%)
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE----LFDLVKNKFIELTRFVS 367
+ R+T + A++PA S ++ V SY H++ ++DL + L RF
Sbjct: 210 LHRLTFDHVLAYSPAWSLKTHQIAYV-------SYLHMDPQILVYDLRTGRRTALARFPG 262
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-----ISLFRFDGS 422
LN I+PD SR G H S GN E + L D ++ R +
Sbjct: 263 -----LN--ITPDFSRDGIHLAVALS---KGNRSQRTEIYVTTLKDKTFNRLTFSRSNNL 312
Query: 423 FPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSG 476
PS+SP G++IAFV P ++V++SDG+N ++ + + S W P + V +
Sbjct: 313 SPSWSPSGNQIAFVSDRDGHPQIFVMDSDGTNVHRITYNGFYNVSPAWGPSGDLVAFVCM 372
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ I + DG +++ G++++ P SPDG+ I++ G
Sbjct: 373 NDRHRPK--------ICLTTPDGSRSIQITHGRGQDDS-PDWSPDGRSIIYSHQVRGKSV 423
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
+ M +G HR+ P W+
Sbjct: 424 IMKMFLDGSH---THRIGTFPRDVITPMWA 450
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 164/433 (37%), Gaps = 87/433 (20%)
Query: 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337
+TLFF E+ + I + VI QTGL+ A+ P T AV
Sbjct: 27 TTLFFMSHGEKANAIDL-SVISNQTGLMFKL-------------AYIPLTQG------AV 66
Query: 338 ATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF-ISPDSSRV----GYHKCRGG 392
A+ + T + + DLV++ + +++ + L ++ + + + GY
Sbjct: 67 ASSKATKEAQDLIFRDLVESGYFDVSIPSNEAVSKLQAISLTGEGTSMLASGGYEGVAAA 126
Query: 393 STREDGNNQLLLENIKSPLPDISLF---------------RF--DGSFPSFSPKGDRIAF 435
EDG +L ++ P+ L RF D F KG +A
Sbjct: 127 RVTEDGTGTHVLGVVRDPVSGKVLLSREYTTSGAARHAIHRFVDDVIFQFTGLKGIAMAK 186
Query: 436 VEFPG--------VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFASESS 485
+ F G +Y ++ DG ++ F + A+S W + Y S +
Sbjct: 187 IAFIGKNPRRGYDLYAMDFDGEGLHRLTFDHVLAYSPAWSLKTHQIAYVS----YLHMDP 242
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF---RSTRTGYKNLYIMDA 542
++ + + ++ L N P S DG + + R+ +Y+
Sbjct: 243 QILVYDLRTGRRTALARFPGL------NITPDFSRDGIHLAVALSKGNRSQRTEIYVTTL 296
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+ +RLT ++ +WSP G IAF SDRD G +++++ +GT + ++
Sbjct: 297 KDKT---FNRLTFSRSNNLSPSWSPSGNQIAFVSDRD----GHPQIFVMDSDGTNVHRIT 349
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+G + P + P G + F + +++P +I DGS ++T
Sbjct: 350 YNGFYNVS--PAWGPSGDLVAF-----------VCMNDRHRP--KICLTTPDGSRSIQIT 394
Query: 663 QNSFEDGTPAWGP 675
+D +P W P
Sbjct: 395 HGRGQDDSPDWSP 407
>gi|358374479|dbj|GAA91071.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 682
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ DGSN + + N F W P + V +TS +++ ++IN
Sbjct: 53 LYIAEPDGSNEKLLLGSNTVYDFRASWSPDAKHVYFTS--ERRGDGQADIYRVAINGTST 110
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTEG 556
+G + G +++ S+SPDGK + F ++R + +M E G L LT
Sbjct: 111 EGAEIEEVALSPGVDDS-ASISPDGKMLAFATSRYNQTSQIMLMVLETGS---LKNLTLI 166
Query: 557 PWSDTMCN-----------WSPDGEWIAFASDRDNP------GSG-----SFEMYLIHPN 594
P N WSPDGEWI F SDR+ P GSG +Y PN
Sbjct: 167 PGISEAANSSLPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPN 226
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
GT R L+ S S P FSP+GK +VF
Sbjct: 227 GTDFR-LVSSRSNYTQGSPRFSPNGKRLVF 255
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 22/230 (9%)
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A+ W P + + G +SS I S+ + G N N FPS
Sbjct: 458 AYQGNWGPNDTNITFGYGAYFVGRQSSPGFIFSVTPE---GTGVTLLAGNNITNYGFPSY 514
Query: 519 SPDGKWIVFRS--------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ DG +VFR+ T G L I+D + + +LT W D + +SPDG+
Sbjct: 515 NHDGTQVVFRTWPGTASNGTTIGTTGLAIVDLPSRQ---VTQLTT-EW-DNLPAFSPDGK 569
Query: 571 WIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
I F ++ DN G +++++ ++P+G+ L KL S ++ H ++ DG+ I++++
Sbjct: 570 KILFTRRTNLDNIGD-NYDIFTMNPDGSELTKLTPSIASDA--HAVWTQDGR-ILYSTAM 625
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFI 678
G E QPY I ++ DGS+ L+ + +ED P + P +
Sbjct: 626 FGFQQEAPLYDDSMQPYAIIVLMEADGSNKTVLSNSLWEDAMPMFAPAHV 675
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGG--EGYG 549
+ + DG + L +N + S SPD K + F S R G ++Y + G EG
Sbjct: 55 IAEPDGSNEKLLLGSNTVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTEGAE 114
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ + P D + SPDG+ +AFA+ R N S M ++ G+ + G +
Sbjct: 115 IEEVALSPGVDDSASISPDGKMLAFATSRYNQTSQI--MLMVLETGSLKNLTLIPGISEA 172
Query: 610 AN--------HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG---------EIFKIK 652
AN P +SPDG+ IVFTSD +TP + G I+ +
Sbjct: 173 ANSSLPNGYFKPTWSPDGEWIVFTSDR--------NTPWRGHSDGSGWEHTQELSIYAAR 224
Query: 653 LDGSDLKRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNE 689
+G+D + ++ S + G+P + P R V E + +
Sbjct: 225 PNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTED 262
>gi|289207751|ref|YP_003459817.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Thioalkalivibrio sp. K90mix]
gi|288943382|gb|ADC71081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
sp. K90mix]
Length = 428
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 29/212 (13%)
Query: 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPE 479
+F S GD F + V +SDG+N R ++ K S W P +VY S
Sbjct: 165 AFVSVERNGDERRFA----LEVADSDGANPRTLFRSAKPIMSPDWSPDGRELVYVS---- 216
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
F + SEV +V+ S R + G N+A P+ SPDG+++ +R G N+Y+
Sbjct: 217 FENRRSEV-----YRQNVETGSRERVASFTGINSA-PAWSPDGRYLALSLSRDGAPNIYL 270
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M+ E GE + ++T+ +T WSPDGE + F SDR +G+ ++Y + G R
Sbjct: 271 MELETGE---MRQMTQTRSIETEPVWSPDGETLYFTSDR----AGAPQIYALPREGGSPR 323
Query: 600 KL-IQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+L +SG A A SPDG+ +V+ +GG
Sbjct: 324 RLTFESGYAAAAT---VSPDGRYLVYV--HGG 350
>gi|194337187|ref|YP_002018981.1| WD40 domain-containing protein beta Propeller [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309664|gb|ACF44364.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme
BU-1]
Length = 440
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 424 PSFSPKGDRIAFVEFP-GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
PS SP G +A+++F G V+ R+ DP + G E A+
Sbjct: 216 PSLSPDGRHLAYIDFSSGRSVLRIQNLGERKTASVGNSGVSIDPAWRS------GSEVAA 269
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S I + DG + RRLT + + P+ SPDG + F S+R G ++I D
Sbjct: 270 TLSFDGNQQIYLVKTDGTLS-RRLTNSRSIDISPAFSPDGSKMAFVSSRNGLPQIFIQDI 328
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+ G+ + RLT +T +WSP G+ IA+ + N G ++ + +G+GL +L
Sbjct: 329 QSGQ---VKRLTFSGRYNTQPSWSPAGDKIAYTTWEKN---GEINIFTVSADGSGLMQLT 382
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ G P +SPDG+ IVF+S+ G +++ + G + L
Sbjct: 383 RR--CGENICPSWSPDGQMIVFSSNRSGKQ--------------KLYTMDSKGDKQRALL 426
Query: 663 QNSFEDGTPAWGPR 676
Q + P+W R
Sbjct: 427 QVDGQQTQPSWSLR 440
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 397 DGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNR 451
DGN Q+ L L ++ R P+FSP G ++AFV P +++ +
Sbjct: 274 DGNQQIYLVKTDGTLSRRLTNSRSIDISPAFSPDGSKMAFVSSRNGLPQIFIQDIQSGQV 333
Query: 452 RQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
+++ F ++T W P + + YT+ ++ E++I +++ D S + +LT
Sbjct: 334 KRLTFSGRYNTQPSWSPAGDKIAYTT-----WEKNGEINIFTVSADG----SGLMQLTRR 384
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL----TEGPWS 559
N PS SPDG+ IVF S R+G + LY MD++G + L ++ T+ WS
Sbjct: 385 CGENICPSWSPDGQMIVFSSNRSGKQKLYTMDSKGDKQRALLQVDGQQTQPSWS 438
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 25/244 (10%)
Query: 364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI---KSPLPDISLFRFD 420
+ + ++ +NP +SPD + Y G + L ++N+ K+ S D
Sbjct: 205 QLTNSRSITMNPSLSPDGRHLAYIDF------SSGRSVLRIQNLGERKTASVGNSGVSID 258
Query: 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
++ S S ++F +Y+V +DG+ R++ N+ S P ++ G +
Sbjct: 259 PAWRSGSEVAATLSFDGNQQIYLVKTDGTLSRRL--TNSRSIDISPA-----FSPDGSKM 311
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS-TRTGYKNLYI 539
A SS + I + D+ V+RLT +G+ N PS SP G I + + + G N++
Sbjct: 312 AFVSSRNGLPQIFIQDIQS-GQVKRLTFSGRYNTQPSWSPAGDKIAYTTWEKNGEINIFT 370
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
+ A+G GL +LT + +WSPDG+ I F+S+R SG ++Y + G R
Sbjct: 371 VSADGS---GLMQLTRRCGENICPSWSPDGQMIVFSSNR----SGKQKLYTMDSKGDKQR 423
Query: 600 KLIQ 603
L+Q
Sbjct: 424 ALLQ 427
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 89/235 (37%), Gaps = 80/235 (34%)
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
GK++ F G IVF S TGYK +Y D +GYG+ +LT + SPDG
Sbjct: 172 GKSSVF------GSKIVFVSNNTGYKEIYQCDF---DGYGVEQLTNSRSITMNPSLSPDG 222
Query: 570 E---WIAFASDRD----------------NPG-------------------SGSFEMYLI 591
+I F+S R N G G+ ++YL+
Sbjct: 223 RHLAYIDFSSGRSVLRIQNLGERKTASVGNSGVSIDPAWRSGSEVAATLSFDGNQQIYLV 282
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI--------------- 636
+GT R+L S S + P FSPDG + F S G+ I
Sbjct: 283 KTDGTLSRRLTNSRSIDIS--PAFSPDGSKMAFVSSRNGLPQIFIQDIQSGQVKRLTFSG 340
Query: 637 --STPHQYQPYGE--------------IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+T + P G+ IF + DGS L +LT+ E+ P+W P
Sbjct: 341 RYNTQPSWSPAGDKIAYTTWEKNGEINIFTVSADGSGLMQLTRRCGENICPSWSP 395
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD 413
LVK R + ++ ++P SPD S++ + R +G Q+ +++I+S
Sbjct: 281 LVKTDGTLSRRLTNSRSIDISPAFSPDGSKMAFVSSR------NGLPQIFIQDIQS--GQ 332
Query: 414 ISLFRFDGSF---PSFSPKGDRIAFVEFP-----GVYVVNSDGSNRRQVYFKNAFSTV-- 463
+ F G + PS+SP GD+IA+ + ++ V++DGS Q+ + +
Sbjct: 333 VKRLTFSGRYNTQPSWSPAGDKIAYTTWEKNGEINIFTVSADGSGLMQLTRRCGENICPS 392
Query: 464 WDPVREAVVYTS 475
W P + +V++S
Sbjct: 393 WSPDGQMIVFSS 404
>gi|398835554|ref|ZP_10592915.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. YR522]
gi|398216130|gb|EJN02686.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. YR522]
Length = 425
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 143/351 (40%), Gaps = 69/351 (19%)
Query: 350 ELFDLVKNKFIELTRFVS-PKTHHLNPFISPD-------------SSRVGYHKCRGGSTR 395
LFD V++ + F S P+ L D S+R+ Y G R
Sbjct: 116 RLFDTVQSSQLSALSFGSQPQLMRLTAHKIADDIYQKLTGIPGIFSTRIAYVTKSGSEYR 175
Query: 396 ---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDG 448
D + + ++S P IS PS+SP G ++A+V F P VY+ N
Sbjct: 176 LEVADADGEGSQVALRSNEPIIS--------PSWSPDGTKVAYVSFEMKKPVVYIQNLVT 227
Query: 449 SNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504
R V FK + S W P R AV T G ++V II + DG + +R
Sbjct: 228 RQRSVVANFKGSNSAPSWSPDGSRLAVALTRDG------YTQVYII-----NADG-TGLR 275
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + P S DG + F S R+G +Y + +GG R+T +
Sbjct: 276 RLTNTAGIDTEPRFSADGGSVFFTSDRSGGPQIYKVSVDGGNA---QRVTFNGTYNISPR 332
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
SPDG+ +AF + RD G F++Y + ++L R P F+P+GK I++
Sbjct: 333 VSPDGKTLAFIARRD----GRFQLYALDLTNGQEQRL---SDTDRDQSPSFAPNGKYIMY 385
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ G G + + +DG +RLT + P WGP
Sbjct: 386 ATESG--------------RRGSLAIVSVDGRFKQRLTTQVGDIREPTWGP 422
>gi|407647794|ref|YP_006811553.1| hypothetical protein O3I_033150 [Nocardia brasiliensis ATCC 700358]
gi|407310678|gb|AFU04579.1| hypothetical protein O3I_033150 [Nocardia brasiliensis ATCC 700358]
Length = 310
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA-SE 483
+FSP G+ + F +F Y N G++ R + V VR+ P A ++
Sbjct: 37 AFSPDGNALVFTQFDAGY--NLGGASLRVLRTSGGPPQVL--VRKGDQAAVNLPGAAWNK 92
Query: 484 SSEVDIISINVDDVDGV------SAVRRLTTNGKNNAF--PSVSPDGKWIVFRS--TRTG 533
+ + S +V D+D + SA R+TT+ + PS +PDG+WIVF+ T+TG
Sbjct: 93 PTGLITFSYDVTDLDEIWTIAPGSAPTRVTTHDSIRGYTEPSFAPDGEWIVFQENDTQTG 152
Query: 534 -YKNLYIMDAEGGEGYGLHRLTEGPWSDT---MCNWSPDGEWIAFASDRDNPGSGSFEMY 589
I +G + L +GP +DT NWSP G+ I F S + S +++
Sbjct: 153 PGARGSIWKVRRADGLPIE-LVDGPGTDTDNRQPNWSPRGDRIVFQSRHAD--SADWDLV 209
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
I +G+G L + A FSPDG +V++SD H P+ +IF
Sbjct: 210 TIASDGSGRATL--TAGADEDTDASFSPDGNWVVYSSD------------HARTPHAQIF 255
Query: 650 KIKLDGSDLK-RLTQNSFEDGTPAWGP 675
+ DG+ L R+T + DG P+W P
Sbjct: 256 AHRADGTGLPVRVTTSEHYDGAPSWSP 282
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
+N P+ SP G IVF+S + ++ +G G LT G DT ++SPDG W
Sbjct: 181 DNRQPNWSPRGDRIVFQSRHADSADWDLVTI-ASDGSGRATLTAGADEDTDASFSPDGNW 239
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+ ++SD + +++ +GTGL + + S P +SPDG+ I F S G
Sbjct: 240 VVYSSDHAR--TPHAQIFAHRADGTGLPVRVTT-SEHYDGAPSWSPDGRWITFESSADGE 296
Query: 632 SAEPI 636
SA +
Sbjct: 297 SATAL 301
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 23/147 (15%)
Query: 395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG------VYVVNSDG 448
R DG L +E + P D D P++SP+GDRI F + + SDG
Sbjct: 164 RADG---LPIELVDGPGTDT-----DNRQPNWSPRGDRIVFQSRHADSADWDLVTIASDG 215
Query: 449 SNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
S R + T + P VVY+S + + I DG R+
Sbjct: 216 SGRATLTAGADEDTDASFSPDGNWVVYSS-------DHARTPHAQIFAHRADGTGLPVRV 268
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTG 533
TT+ + PS SPDG+WI F S+ G
Sbjct: 269 TTSEHYDGAPSWSPDGRWITFESSADG 295
>gi|194290407|ref|YP_002006314.1| translocation protein tolb [Cupriavidus taiwanensis LMG 19424]
gi|193224242|emb|CAQ70251.1| colicin transporter component [Cupriavidus taiwanensis LMG 19424]
Length = 457
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
PS+SP G R+A+V F P VYV + R V + ++ W P +
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRTLVSNQKGNNSAPSWSPDGRHLALA--- 285
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S +RRL+ + + P SPDGK I F S R G +
Sbjct: 286 ---LSRDGNTQVYQVNADG----SGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQI 338
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G EG G R+T + SPDG+++A+ S +G F++ L
Sbjct: 339 YRMPASGEEGGGAQRVTFKGSYNVSPRISPDGKYLAYISR-----AGGFKLQLQDLTNGD 393
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG + + + DG
Sbjct: 394 VTSLTDTAN---DEAPSFAANGKYILYATRVGGRAV--------------LAAVSTDGRT 436
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S + P+WGP
Sbjct: 437 RQVLSLQSGDVREPSWGP 454
>gi|422022121|ref|ZP_16368630.1| translocation protein TolB [Providencia sneebia DSM 19967]
gi|414097871|gb|EKT59524.1| translocation protein TolB [Providencia sneebia DSM 19967]
Length = 430
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P E + Y + F S
Sbjct: 166 RIAYVVTNKGGQYPYELRVSDYDGYNQFTVHRSPEPLMSPAWSPDGERLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GSSALVIQTLSS------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y I+ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKININGGSPERVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS ++ SPDG IV S GG Q+ I K L +++ LT
Sbjct: 329 WEGS--QSQDADVSPDGSFIVMVSSGGG---------QQH-----IAKQDLATGNVEYLT 372
Query: 663 QNSFEDGTPAWGP 675
+ +F D TP+ P
Sbjct: 373 K-TFLDETPSIAP 384
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD R+ Y T E G++ L+++ + S + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGERLAY------VTFESGSSALVIQTLSSGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ + R+T G + VSPDG +IV S+ G +++ D G
Sbjct: 311 RPQIYKINING----GSPERVTWEGSQSQDADVSPDGSFIVMVSSGGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 N---VEYLTK-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|186477204|ref|YP_001858674.1| translocation protein TolB [Burkholderia phymatum STM815]
gi|226705871|sp|B2JGA0.1|TOLB_BURP8 RecName: Full=Protein TolB; Flags: Precursor
gi|184193663|gb|ACC71628.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
phymatum STM815]
Length = 430
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 153/387 (39%), Gaps = 92/387 (23%)
Query: 328 SPGNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSPK------THHLNPFISP 379
+ G N F+A T+ P Y+ +L+D V + + VSP+ H + +I
Sbjct: 94 AKGANAFVAGSVTKLPNGQYQVRFKLYDTVNQQSLGGLELVSPEGGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + PS SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSSIDTEPSYSPDGQSIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A G G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 308 PQIYKMPASGEASGGAQRVTFTGNYNTSPRVSPDGKQLAYISRT----GGGFKLYI---- 359
Query: 595 GTGLRKLIQSGSAGRAN------HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ +QSG A P F+ +G+ I++ + G G +
Sbjct: 360 -----QDLQSGVATALTDTTHDESPSFAANGQYILYATQVNG--------------RGVL 400
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG + L+ P+WGP
Sbjct: 401 AAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|113868785|ref|YP_727274.1| translocation protein TolB [Ralstonia eutropha H16]
gi|113527561|emb|CAJ93906.1| periplasmic component of the Tol biopolymer transport system
[Ralstonia eutropha H16]
Length = 457
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
PS+SP G R+A+V F P VYV + R V + ++ W P +
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRTLVSNQKGNNSAPSWSPDGRHLALA--- 285
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S +RRL+ + + P SPDGK I F S R G +
Sbjct: 286 ---LSRDGNTQVYQVNADG----SGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQV 338
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G EG G R+T + SPDG+++A+ S +G F++ L +
Sbjct: 339 YRMPASGEEGGGAQRVTFKGSYNVSPRVSPDGKYLAYISR-----AGGFKLQLQDLSNGD 393
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG + + + DG
Sbjct: 394 VTSLTDTAN---DEAPSFAANGKYILYATRVGGRAV--------------LAAVSTDGRT 436
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S + P+WGP
Sbjct: 437 RQVLSLQSGDVREPSWGP 454
>gi|94496181|ref|ZP_01302759.1| TolB-like protein [Sphingomonas sp. SKA58]
gi|94424360|gb|EAT09383.1| TolB-like protein [Sphingomonas sp. SKA58]
Length = 444
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG N + N +S I+L P FSP I +V + G +YV + +R
Sbjct: 200 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLGSRVRLYVYDIGTGQQR 249
Query: 453 QVYFKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V N F+ W P ++++ + + DI ++ + G S VR LT +
Sbjct: 250 LVTESNNPTFAPRWSPDGRNILFS------MAVAGNTDIYRVSAN---GGSPVR-LTNSP 299
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG IVF S R+G + LY+M+A+G R++ G WSP G+
Sbjct: 300 GIDVGGSYSPDGSRIVFESDRSGGQQLYVMNADGSN---QRRISHGGGRYATPEWSPRGD 356
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ PNG R L + + P +SP+G+ + F
Sbjct: 357 LIAFTKL-----SGDFKIAVMSPNGDNERILT---NGWQDEQPTWSPNGRVLQFFR---- 404
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + Q +++++ L G + +R+ PAWGP
Sbjct: 405 ------TTPGR-QGTSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 441
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ A P SPD K IV+ S LY+ D G G
Sbjct: 194 LAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLGSRVRLYVYDI----GTGQ 247
Query: 551 HRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL + T WSPDG I F+ +G+ ++Y + NG +L + S G
Sbjct: 248 QRLVTESNNPTFAPRWSPDGRNILFSMAV----AGNTDIYRVSANGGSPVRL--TNSPGI 301
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG IVF SD G +++ + DGS+ +R++
Sbjct: 302 DVGGSYSPDGSRIVFESDRSGGQ--------------QLYVMNADGSNQRRISHGGGRYA 347
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 348 TPEWSPR 354
>gi|398384073|ref|ZP_10542127.1| tol-pal system beta propeller repeat protein TolB [Sphingobium sp.
AP49]
gi|397723581|gb|EJK84074.1| tol-pal system beta propeller repeat protein TolB [Sphingobium sp.
AP49]
Length = 444
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG N + N +S I+L P FSP I +V + G +YV + +R
Sbjct: 200 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLGSRVRIYVYDIGTGKQR 249
Query: 453 QVYFKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V N F+ W P ++++ + S DI ++ V RLTT+
Sbjct: 250 LVTESNNATFAPRWSPDGRNILFS------MAVSGNTDIYRVSAQGGTPV----RLTTSP 299
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G R++ G WSP G+
Sbjct: 300 GIDVGGSYSPDGRQIVFESDRSGGQQIYVMNADGSN---QRRISHGGGRYATPEWSPRGD 356
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 357 LIAFTKL-----SGDFKIAVMTPSGDNERILT---NGWQDEQPTWSPNGRVLQFFR---- 404
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + Q +++++ L G + +R+ PAWGP
Sbjct: 405 ------TTPGR-QGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 441
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ +ES D + + + D DG A R TNG++ A P SPD K IV+ S
Sbjct: 180 YIAESGPKDNRVKRLAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLGSRVR 237
Query: 537 LYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+ D G G RL TE + WSPDG I F+ SG+ ++Y + G
Sbjct: 238 IYVYDI----GTGKQRLVTESNNATFAPRWSPDGRNILFSMAV----SGNTDIYRVSAQG 289
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+L + S G +SPDG+ IVF SD G +I+ + DG
Sbjct: 290 GTPVRL--TTSPGIDVGGSYSPDGRQIVFESDRSGGQ--------------QIYVMNADG 333
Query: 656 SDLKRLTQNSFEDGTPAWGPR 676
S+ +R++ TP W PR
Sbjct: 334 SNQRRISHGGGRYATPEWSPR 354
>gi|121998996|ref|YP_001003783.1| translocation protein TolB [Halorhodospira halophila SL1]
gi|121590401|gb|ABM62981.1| TolB, N-terminal domain protein [Halorhodospira halophila SL1]
Length = 436
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+ V +SDG + + + S W P R+ + Y S F SEV + I + +
Sbjct: 189 LVVADSDGHRPQTILTSDEPLLSPAWSPSRDRLAYVS----FEGRRSEVFVQEIRTGERE 244
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
V++ R + N+ P+ SPDG + +R G N+Y++D G+ + LT+
Sbjct: 245 RVASFRGI------NSAPAWSPDGDQLAVTLSRDGAANIYLIDVASGD---VRPLTDHWA 295
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
DT W PDG+WI F SDR G ++Y P+G+ ++ G+ P SPD
Sbjct: 296 IDTEATWGPDGDWIYFTSDR----GGRPQIYRTPPDGSETERVTYDGAYN--ARPSISPD 349
Query: 619 GKSIVFTSDYGG 630
G+ + + G
Sbjct: 350 GERMAMVHRHDG 361
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
L+P SP R+ Y G +++ ++ I++ + ++ FR S P++SP GD
Sbjct: 210 LSPAWSPSRDRLAYVSFEGR------RSEVFVQEIRTGERERVASFRGINSAPAWSPDGD 263
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++A +Y+++ + R + A T W P + + +TS G P+
Sbjct: 264 QLAVTLSRDGAANIYLIDVASGDVRPLTDHWAIDTEATWGPDGDWIYFTSDRGGRPQIYR 323
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIM 540
DG S R+T +G NA PS+SPDG+ + G Y L +
Sbjct: 324 TPP------------DG-SETERVTYDGAYNARPSISPDGERMAMVHRHDGQYYIALQDL 370
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
D E + +++GP +D +++P+G+ + + +
Sbjct: 371 DTE-----AVQIISDGP-ADESPSFAPNGDLVIYTT 400
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG+ +A RD G+ +YLI +R L + + PDG I F
Sbjct: 258 WSPDGDQLAVTLSRD----GAANIYLIDVASGDVRPLTDHWAID--TEATWGPDGDWIYF 311
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
TSD GG +P +I++ DGS+ +R+T + + P+ P
Sbjct: 312 TSDRGG------------RP--QIYRTPPDGSETERVTYDGAYNARPSISP 348
>gi|89889850|ref|ZP_01201361.1| putative periplasmic component of the Tol biopolymer transport
system [Flavobacteria bacterium BBFL7]
gi|89518123|gb|EAS20779.1| putative periplasmic component of the Tol biopolymer transport
system [Flavobacteria bacterium BBFL7]
Length = 376
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D++G + +LT +A P+VSP G IVF S R+G LY MD +G
Sbjct: 161 DSYDIFVADLEG-NITAQLTNEKGYDAEPTVSPQGDKIVFTSDRSGDLELYTMDIDGS-- 217
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T D +SPDG + F S R D G E+Y+
Sbjct: 218 -NVKQITYELGYDGGAFFSPDGSQLIFRSSRPKTEEEIKEYKDLLKVGLVQPTEMELYIC 276
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ LR+L Q G+A + P+F PDGK ++F+S++ P + ++ I
Sbjct: 277 NADGSDLRQLTQLGNANWS--PFFLPDGKRVLFSSNFEAERGFPFN----------LYMI 324
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
DG+ L+R+T D P +
Sbjct: 325 NTDGTGLERITHGETFDAFPVF 346
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGG 477
P+ SP+GD+I F +Y ++ DGSN +Q+ ++ + + P +++ S
Sbjct: 188 PTVSPQGDKIVFTSDRSGDLELYTMDIDGSNVKQITYELGYDGGAFFSPDGSQLIFRSSR 247
Query: 478 PEFASESSEV-DIISIN----------VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
P+ E E D++ + + + DG S +R+LT G N P PDGK ++
Sbjct: 248 PKTEEEIKEYKDLLKVGLVQPTEMELYICNADG-SDLRQLTQLGNANWSPFFLPDGKRVL 306
Query: 527 FRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
F S + NLY+++ +G GL R+T G D +S +G+++AF+S+R+N G
Sbjct: 307 FSSNFEAERGFPFNLYMINTDGT---GLERITHGETFDAFPVFSNNGKYLAFSSNRNNGG 363
Query: 583 SGSFEMYL 590
+++
Sbjct: 364 GRDTNLFI 371
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++++ D EG +LT D SP G+ I F SDR SG E+Y + +G
Sbjct: 164 DIFVADLEGNI---TAQLTNEKGYDAEPTVSPQGDKIVFTSDR----SGDLELYTMDIDG 216
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL-- 653
+ ++++ + G +FSPDG ++F S + P T + + Y ++ K+ L
Sbjct: 217 SNVKQI--TYELGYDGGAFFSPDGSQLIFRS------SRP-KTEEEIKEYKDLLKVGLVQ 267
Query: 654 -----------DGSDLKRLTQNSFEDGTPAWGPRFI 678
DGSDL++LTQ G W P F+
Sbjct: 268 PTEMELYICNADGSDLRQLTQL----GNANWSPFFL 299
>gi|262199569|ref|YP_003270778.1| beta-propeller repeat-containing to-pal system protein TolB
[Haliangium ochraceum DSM 14365]
gi|262082916|gb|ACY18885.1| beta-propeller repeat-containing to-pal system protein TolB
[Haliangium ochraceum DSM 14365]
Length = 362
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 34/194 (17%)
Query: 496 DVDGVSAVRRLT----------TNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
D +G S + R+T + K +F PS+SPDG I F S+R G LY+ DA+G
Sbjct: 144 DAEGFSNLVRMTPAPEAEARSIQDAKAGSFEPSISPDGTQIAFVSSRDGDPELYLSDAQG 203
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
+ + RLT D WSPDG +IAF S+R+ ++LI P+G+G R +
Sbjct: 204 QD---VRRLTHFHLEDWAPQWSPDGRYIAFLSNREK----RARVFLIRPDGSGTRAVSGM 256
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR---L 661
+ G + P+G S+VF ++K+++ + L
Sbjct: 257 AATGDERDIAWHPEGGSLVFVG-------------RMDDGKTRLWKVEIGDDAVGEPVAL 303
Query: 662 TQNSFEDGTPAWGP 675
T S D PAW P
Sbjct: 304 TDGSSRDDQPAWSP 317
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFS 427
K P ISPD +++ + R DG+ +L L + + + ++ F + P +S
Sbjct: 169 KAGSFEPSISPDGTQIAFVSSR------DGDPELYLSDAQGQDVRRLTHFHLEDWAPQWS 222
Query: 428 PKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFS----TVWDPVREAVVYTSGGPE 479
P G IAF+ + V+++ DGS R V A W P ++V+
Sbjct: 223 PDGRYIAFLSNREKRARVFLIRPDGSGTRAVSGMAATGDERDIAWHPEGGSLVFVG---- 278
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
+ + + + + D D V LT + P+ SPDGK++VF S R G +LY+
Sbjct: 279 -RMDDGKTRLWKVEIGD-DAVGEPVALTDGSSRDDQPAWSPDGKYLVFVSEREGNTDLYL 336
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNW 565
M A +G G RLTE P +D + W
Sbjct: 337 MRA---DGSGQTRLTEAPGADWLPRW 359
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 41/300 (13%)
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
+ A PG + + +A R H E LV+ + +P+ NP ++PD S
Sbjct: 80 YPAAAIPGQDALLVIAARDLGDV--HKEQLQLVRLSGERVGSLHAPRGRSRNPSVAPDGS 137
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD----GSF-PSFSPKGDRIAFVE 437
+ S E +N + + +P P+ GSF PS SP G +IAFV
Sbjct: 138 WLVAE-----SDAEGFSNLVRM----TPAPEAEARSIQDAKAGSFEPSISPDGTQIAFVS 188
Query: 438 F----PGVYVVNSDGSN-RRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
P +Y+ ++ G + RR +F ++ W P + + S + A +
Sbjct: 189 SRDGDPELYLSDAQGQDVRRLTHFHLEDWAPQWSPDGRYIAFLSNREKRAR-------VF 241
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF----RSTRTGYKNLYIMDAEGGEG 547
+ D G AV + G + P+G +VF +T + I D GE
Sbjct: 242 LIRPDGSGTRAVSGMAATGDERDI-AWHPEGGSLVFVGRMDDGKTRLWKVEIGDDAVGEP 300
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
L T+G D WSPDG+++ F S+R+ G+ ++YL+ +G+G +L ++ A
Sbjct: 301 VAL---TDGSSRDDQPAWSPDGKYLVFVSERE----GNTDLYLMRADGSGQTRLTEAPGA 353
>gi|262277490|ref|ZP_06055283.1| Tol-Pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB114]
gi|262224593|gb|EEY75052.1| Tol-Pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB114]
Length = 445
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 26/213 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP G + ++ + P VY++N + + V + F+ + P ++ +
Sbjct: 212 PRFSPNGKMVTYMSYFKNLPRVYLLNIETGIQEVVGDFPGMTFAPRFSPDGRKIIMS--- 268
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
FA + + DI +++++ V ++T+N + PS SPDG++IVF S R+G++ +
Sbjct: 269 --FARDGNS-DIYTMDIES----RRVEQITSNPAIDTSPSFSPDGRFIVFNSDRSGFQQI 321
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M + +G G+ R++ G WSP G+ IAF G F + ++ +GTG
Sbjct: 322 YTMRS---DGRGVKRISRGKGLYGTPVWSPRGDLIAFTKIH----KGKFYIGVMRTDGTG 374
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
R L Q+ P +SP+G+ ++F + G
Sbjct: 375 ERLLTQNFY---QEAPSWSPNGRVLIFYRETAG 404
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 506 LTTNGKNNAF----------PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+ +G NN F P SP+GK + + S +Y+++ E G + +
Sbjct: 192 MDQDGANNKFLTLGNELVLTPRFSPNGKMVTYMSYFKNLPRVYLLNIETGIQ---EVVGD 248
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +SPDG I + RD G+ ++Y + + ++ + + P F
Sbjct: 249 FPGMTFAPRFSPDGRKIIMSFARD----GNSDIYTMDIESRRVEQI--TSNPAIDTSPSF 302
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDG+ IVF SD G + +I+ ++ DG +KR+++ GTP W P
Sbjct: 303 SPDGRFIVFNSDRSG--------------FQQIYTMRSDGRGVKRISRGKGLYGTPVWSP 348
Query: 676 R 676
R
Sbjct: 349 R 349
>gi|226225576|ref|YP_002759682.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27]
gi|226088767|dbj|BAH37212.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27]
Length = 380
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 37/211 (17%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y + DG N ++ ++ V P + +V+TS + ++DI ++NVD D
Sbjct: 169 IYTADRDGQNLTRLTNYGVYTAEGVLSPDGKRIVFTS------LKDGDLDIYTMNVDGTD 222
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS--------------------TRTGYKNLY 538
V+RLTT + P SPDG IV+R+ R L+
Sbjct: 223 ----VKRLTTTPGYDGGPWWSPDGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELF 278
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+M+A+G + + +L + + W+PDG+ + F+S+ NP S +F++Y++ +G L
Sbjct: 279 VMNADGSDQRQITKLGGANFGPS---WTPDGQRVIFSSNHKNPRSRNFDLYIVGLDGNNL 335
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
++ +G P FSPDG +++ S+ G
Sbjct: 336 EQVTTNGEF--DGFPMFSPDGTKLIWASNRG 364
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 32/205 (15%)
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
+D I D DG + + RLT G A +SPDGK IVF S + G ++Y M+ +G +
Sbjct: 164 IDKYDIYTADRDGQN-LTRLTNYGVYTAEGVLSPDGKRIVFTSLKDGDLDIYTMNVDGTD 222
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFAS---DRDNPGSG-------------SFEMYL 590
+ RLT P D WSPDG I + + D D E+++
Sbjct: 223 ---VKRLTTTPGYDGGPWWSPDGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFV 279
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
++ +G+ R++ + G A P ++PDG+ ++F+S++ P S +++
Sbjct: 280 MNADGSDQRQITKLGGANFG--PSWTPDGQRVIFSSNH----KNPRSRNF------DLYI 327
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
+ LDG++L+++T N DG P + P
Sbjct: 328 VGLDGNNLEQVTTNGEFDGFPMFSP 352
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 39/204 (19%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEG 547
I++ D + R TNG NA S DG+W+ F+STR G Y+M +G
Sbjct: 58 IAVTADSGEAHLTNIRQITNGGENAEAYFSQDGQWLTFQSTRDGRACDQQYVMRV---DG 114
Query: 548 YGLHRLTEGPWSDTMCNW-SPDGEWIAFASD---------RDNPGSG------SFEMYLI 591
GL +++ G T C W P G + FAS R +P G +++Y
Sbjct: 115 TGLTKVSVG--GKTTCGWFLPGGNKLFFASTHAADSACPPRPDPSKGYVWGIDKYDIYTA 172
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+G L +L G SPDGK IVFTS G +I+ +
Sbjct: 173 DRDGQNLTRLTNYGV--YTAEGVLSPDGKRIVFTSLKDGDL--------------DIYTM 216
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
+DG+D+KRLT DG P W P
Sbjct: 217 NVDGTDVKRLTTTPGYDGGPWWSP 240
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 62/260 (23%)
Query: 329 PGNNKFIAVATR--------RPTSSYRH---IELFDL--VKNKFIELTRFVSPKTHHLNP 375
PG NK +T RP S + I+ +D+ LTR + +
Sbjct: 133 PGGNKLFFASTHAADSACPPRPDPSKGYVWGIDKYDIYTADRDGQNLTRLTNYGVYTAEG 192
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR----FDGSFPSFSPKGD 431
+SPD R+ + ++ +DG+ + N+ D+ +DG P +SP G
Sbjct: 193 VLSPDGKRIVF------TSLKDGDLDIYTMNVDGT--DVKRLTTTPGYDGG-PWWSPDGT 243
Query: 432 RIAFVEFP------------------------GVYVVNSDGSNRRQVYFKNA--FSTVWD 465
+I + + ++V+N+DGS++RQ+ F W
Sbjct: 244 KIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGANFGPSWT 303
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + V+++S S + ++ I+ ++ ++++ ++TTNG+ + FP SPDG +
Sbjct: 304 PDGQRVIFSSNHKNPRSRNFDLYIVGLDGNNLE------QVTTNGEFDGFPMFSPDGTKL 357
Query: 526 VFRSTRTGYK----NLYIMD 541
++ S R K NL+I +
Sbjct: 358 IWASNRGAAKEGDTNLFIAE 377
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 20/153 (13%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G L RLT SPDG+ I F S +D G ++Y ++ +GT +++L +
Sbjct: 175 DGQNLTRLTNYGVYTAEGVLSPDGKRIVFTSLKD----GDLDIYTMNVDGTDVKRLTTT- 229
Query: 606 SAGRANHPYFSPDGKSIVFTS----------DYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G P++SPDG IV+ + Y + + + P++ E+F + DG
Sbjct: 230 -PGYDGGPWWSPDGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKM----ELFVMNADG 284
Query: 656 SDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN 688
SD +++T+ + P+W P R + KN
Sbjct: 285 SDQRQITKLGGANFGPSWTPDGQRVIFSSNHKN 317
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 31/189 (16%)
Query: 426 FSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---- 475
SP G RI F +Y +N DG++ +++ + W P +VY +
Sbjct: 194 LSPDGKRIVFTSLKDGDLDIYTMNVDGTDVKRLTTTPGYDGGPWWSPDGTKIVYRAWHYD 253
Query: 476 ------GGPEFASES----SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
E ++ +++++ +N D D R++T G N PS +PDG+ +
Sbjct: 254 NDTDLKAYQELLKQNMIRPNKMELFVMNADGSD----QRQITKLGGANFGPSWTPDGQRV 309
Query: 526 VFRST----RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
+F S R+ +LYI+ G +G L ++T D +SPDG + +AS+R
Sbjct: 310 IFSSNHKNPRSRNFDLYIV---GLDGNNLEQVTTNGEFDGFPMFSPDGTKLIWASNRGAA 366
Query: 582 GSGSFEMYL 590
G +++
Sbjct: 367 KEGDTNLFI 375
>gi|381405270|ref|ZP_09929954.1| translocation protein TolB [Pantoea sp. Sc1]
gi|380738469|gb|EIB99532.1| translocation protein TolB [Pantoea sp. Sc1]
Length = 431
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G G+ + DGKS+V S GG + K L+ ++ LT
Sbjct: 330 WEG--GQNQDADVATDGKSMVMISTSGGSQ--------------HVAKQDLETGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|255936369|ref|XP_002559211.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583831|emb|CAP91851.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 680
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 199/506 (39%), Gaps = 80/506 (15%)
Query: 219 FSPAVSPSGKYTAVASYGNKGWDGEVEML-----------STDIYIFLTRDGTQRVKIVE 267
F PA SP G + A +S N W+G + DIYI + +G+ ++
Sbjct: 200 FRPAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQELDIYI-IRPNGSDLRRVAH 258
Query: 268 NG----GWPCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHA 322
G P W D L F+ + + W P+T V+ + +I V G
Sbjct: 259 RDSHCLGSPKWSPDGQRLIFYEMTRNETW----DAHRPET--VADANSTIVSVGINGNDR 312
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
PG F T T Y H++ + + + LT T +P SPD
Sbjct: 313 RIEVGGPGVKTFPQYVTNS-TIGY-HLKGGN---KEGLYLTNGTYSNTTIRSPSWSPDGK 367
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPG 440
V Y K S R L + + S D +RF FP S DR+A E
Sbjct: 368 YVVYEKV-SWSIRP------LFKELYSWDTDWE-YRFTDVFPQLSSD-DRVAVTEKQIGN 418
Query: 441 VYVVNSDGSNRR------------------QVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
+ D +R+ Q A++ W P E VV+ G A
Sbjct: 419 SSIATFDLEDRQVSLIYKPDNTSLLDTTLIQDGLAGAYNPSWSPDGEWVVFGVGAWFEAR 478
Query: 483 ESSEVDIISINVD----DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR---STRTGYK 535
+ I+ + DV S + T N FPS S DGK +V+R + Y
Sbjct: 479 DWRGGWIVRSTANASYIDVLTNSNLNLTGTKDLNTGFPSFSHDGKKVVYRVWGADTAKYG 538
Query: 536 N-----LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+ L I+D E E +LT G W D + ++SPDGE+I F ++E+ +
Sbjct: 539 DGTEIGLRIIDIETRE---TTQLTSG-W-DNLPSFSPDGEFIVFTR---KVAPTNYEICI 590
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
I P+G+ R L SG+ H + DGK I+++S G E +QPYG+I
Sbjct: 591 IRPDGSDFRILTSSGA--NDAHAVWRQDGK-IMWSSGMYGFQYECALYDETFQPYGQIII 647
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ DGS+ LT + +ED P + P+
Sbjct: 648 MDSDGSNKCPLTNSIWEDSMPLFLPK 673
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSE------VDIISINV 494
+Y+ N+DG+N R + + DP E S E+ S +SE DI ++
Sbjct: 79 LYIANADGTNERPL--------LKDPGYEYHAEFSPDSEWISFTSERDGDGNSDIWRVHP 130
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL 553
D D ++ + T+ +SP+G + ST Y N+++ + E G + +
Sbjct: 131 DGSD----LQPIVTSPAAEDSVVISPNGTLAAYVSTANTYNANIWVKNLETGAEWNITDT 186
Query: 554 TEG-PWSDTMCN-----WSPDGEWIAFASDRDNPGSG----------------SFEMYLI 591
P D M WSPDG W+AF+SDR+ G ++Y+I
Sbjct: 187 PNNRPREDMMRGHFRPAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQELDIYII 246
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
PNG+ LR++ S + P +SPDG+ ++F
Sbjct: 247 RPNGSDLRRVAHRDSHCLGS-PKWSPDGQRLIF 278
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 67/249 (26%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRS-TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
A + +T G + PS + K ++ + G LYI +A+G L + P +
Sbjct: 43 ATQSKSTIGVASPTPSAAAGKKGVLLMNRIAPGTSELYIANADGTNE---RPLLKDPGYE 99
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL------------------- 601
+SPD EWI+F S+RD G G+ +++ +HP+G+ L+ +
Sbjct: 100 YHAEFSPDSEWISFTSERD--GDGNSDIWRVHPDGSDLQPIVTSPAAEDSVVISPNGTLA 157
Query: 602 --IQSGSAGRAN-------------------------------HPYFSPDGKSIVFTSD- 627
+ + + AN P +SPDG + F+SD
Sbjct: 158 AYVSTANTYNANIWVKNLETGAEWNITDTPNNRPREDMMRGHFRPAWSPDGNWLAFSSDR 217
Query: 628 ------YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT-QNSFEDGTPAWGPRFIRP 680
+G ++ ++ Q +I+ I+ +GSDL+R+ ++S G+P W P R
Sbjct: 218 NTRWEGHGNLTYLGLAGWEHTQEL-DIYIIRPNGSDLRRVAHRDSHCLGSPKWSPDGQRL 276
Query: 681 VDVEEVKNE 689
+ E +NE
Sbjct: 277 IFYEMTRNE 285
>gi|308186083|ref|YP_003930214.1| protein tolB [Pantoea vagans C9-1]
gi|308056593|gb|ADO08765.1| Protein tolB precursor [Pantoea vagans C9-1]
Length = 431
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGLNGGTPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G G+ + DGKS+V S GG + K L+ ++ LT
Sbjct: 330 WEG--GQNQDADVATDGKSMVMISTSGGAQ--------------HVAKQDLETGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|254441731|ref|ZP_05055224.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter
antarcticus 307]
gi|198251809|gb|EDY76124.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter
antarcticus 307]
Length = 441
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDRI + FP + +++ R+Q+ + AFS + V+Y+
Sbjct: 212 PRFSPSGDRILYTSYESGFPRINILDVATVMRQQMRTADGEMAFSPRFSRDGRQVIYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI ++ RLT PS SPDG IVF S R+G +
Sbjct: 270 ----LANGGNTDIYRTDL----ATGQNMRLTNTPAIETAPSFSPDGSQIVFESDRSGTQQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +GT
Sbjct: 322 LYMMSANGGE---PQRISFGNGRYGTPVWSPRGDLIAFTKQE----LGRFHIGVMRTDGT 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P ++P+G+ I+F+ + G ++ + + G
Sbjct: 375 EERLLT---SSFLDEGPTWAPNGRVIMFSRETQGSDGTT-----------GLYSVDITGR 420
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+R+T + + G+ P+WGP
Sbjct: 421 NLRRVT--TPQGGSDPSWGP 438
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I V D DG + V+ LT + P SP G I++ S +G+ + I+D +
Sbjct: 189 IAVMDYDGAN-VQYLTDSSTIVLAPRFSPSGDRILYTSYESGFPRINILDVATVMRQQM- 246
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGRA 610
R +G + + +S DG + ++ G+ ++Y G +R + +
Sbjct: 247 RTADGEMAFS-PRFSRDGRQVIYSL----ANGGNTDIYRTDLATGQNMRL---TNTPAIE 298
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P FSPDG IVF SD G +++ + +G + +R++ + GT
Sbjct: 299 TAPSFSPDGSQIVFESDRSGTQ--------------QLYMMSANGGEPQRISFGNGRYGT 344
Query: 671 PAWGPR 676
P W PR
Sbjct: 345 PVWSPR 350
>gi|116619651|ref|YP_821807.1| WD40 domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116222813|gb|ABJ81522.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus
Ellin6076]
Length = 464
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 37/270 (13%)
Query: 413 DISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVR 468
I+ F ++P+ SP G +IAF + P +++ + D + Y + A V
Sbjct: 223 QITRFNSISTYPNVSPDGTKIAFTSWVKGQPAIFIFSVDPVRDLRFYNQTA------SVN 276
Query: 469 EAVVYTSGGPE--FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-GKWI 525
+A +T G + +AS + I + ++DG + R +++ P V+P G I
Sbjct: 277 QAGSFTPDGKQIVYASSAGNGICCRIFIANLDG-TGFRPISSPSAIEVEPKVNPKTGADI 335
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
VF S R+G + +Y M+ +G + + RLT G + +W PDG+ IAFA + +G+
Sbjct: 336 VFSSGRSGPQQIYRMNMDGAD---VERLTPGVGEASNPSWHPDGQHIAFAWTQGY-ATGA 391
Query: 586 FEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
F ++ ++ R+ +Q + G+ +P ++PDG IVF G S
Sbjct: 392 FNIFTMN---VATREYVQLTHGDGKNENPNWAPDGVHIVFAKTRGNSS------------ 436
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+I+ + +G+ +++LT + ++ P WG
Sbjct: 437 --QIYTMLANGTQIQQLT-TAGQNERPVWG 463
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 42/281 (14%)
Query: 344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL 403
S ++ I D ++TRF S T+ P +SPD +++ + ++ G +
Sbjct: 206 SGHKEIWAMDPDGKNQRQITRFNSISTY---PNVSPDGTKIAF------TSWVKGQPAIF 256
Query: 404 LENIKSPLPDISLFRFDGSF---PSFSPKGDRIAFVEFPG------VYVVNSDGSNRRQV 454
+ ++ P+ D+ + S SF+P G +I + G +++ N DG+ R +
Sbjct: 257 IFSV-DPVRDLRFYNQTASVNQAGSFTPDGKQIVYASSAGNGICCRIFIANLDGTGFRPI 315
Query: 455 YFKNAFST---VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+A V +V++SG S I +N+D D V RLT
Sbjct: 316 SSPSAIEVEPKVNPKTGADIVFSSG------RSGPQQIYRMNMDGAD----VERLTPGVG 365
Query: 512 NNAFPSVSPDGKWIVFRSTR---TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ PS PDG+ I F T+ TG N++ M+ E +LT G + NW+PD
Sbjct: 366 EASNPSWHPDGQHIAFAWTQGYATGAFNIFTMNVATRE---YVQLTHGDGKNENPNWAPD 422
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
G I FA R N S ++Y + NGT +++L +G R
Sbjct: 423 GVHIVFAKTRGN----SSQIYTMLANGTQIQQLTTAGQNER 459
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
R++T + +P+VSPDG I F S G ++I + + T +
Sbjct: 222 RQITRFNSISTYPNVSPDGTKIAFTSWVKGQPAIFIFSVDPVRDLRFYNQTAS--VNQAG 279
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD-GKSI 622
+++PDG+ I +AS N +++ + +GTG R + S + P +P G I
Sbjct: 280 SFTPDGKQIVYASSAGN--GICCRIFIANLDGTGFRPI--SSPSAIEVEPKVNPKTGADI 335
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
VF+S G P Q I+++ +DG+D++RLT E P+W P
Sbjct: 336 VFSSGRSG--------PQQ------IYRMNMDGADVERLTPGVGEASNPSWHP 374
>gi|183598188|ref|ZP_02959681.1| hypothetical protein PROSTU_01566 [Providencia stuartii ATCC 25827]
gi|386744491|ref|YP_006217670.1| translocation protein TolB [Providencia stuartii MRSN 2154]
gi|188020354|gb|EDU58394.1| Tol-Pal system beta propeller repeat protein TolB [Providencia
stuartii ATCC 25827]
gi|384481184|gb|AFH94979.1| translocation protein TolB [Providencia stuartii MRSN 2154]
Length = 430
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P E + Y + F S
Sbjct: 166 RIAYVVTNKGGQYPYELRVSDYDGYNQFTVHRSPEPLMSPTWSPDGERLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLYIMD
Sbjct: 222 GSSALVIQTLST------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYIMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y I+ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKININGGSPERVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + SPDG IV S GG Q+ I K L +++ LT
Sbjct: 329 WEGTQNQDAD--VSPDGSFIVMVSSGGG---------QQH-----IAKQDLATGNVEYLT 372
Query: 663 QNSFEDGTPAWGP 675
+ +F D TP+ P
Sbjct: 373 K-TFLDETPSIAP 384
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD R+ Y T E G++ L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPTWSPDGERLAY------VTFESGSSALVIQTLSTGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +Y+++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYIMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ + R+T G N VSPDG +IV S+ G +++ D G
Sbjct: 311 RPQIYKINING----GSPERVTWEGTQNQDADVSPDGSFIVMVSSGGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 N---VEYLTK-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|395761473|ref|ZP_10442142.1| periplasmic protein involved in uptake [Janthinobacterium lividum
PAMC 25724]
Length = 425
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 113/261 (43%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDP--VREAVVYTS 475
PS+SP G ++A+V F P VYV N R V + ++ W P R AV +
Sbjct: 199 PSWSPDGTKVAYVSFEKKKPIVYVQNLVTRERTIVSNEKGSNSAPSWSPDGARLAVALSR 258
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G + ++N D S +RR++ + + P S DG+ I F S R+G
Sbjct: 259 DG--------HTQVYTVNADG----SGLRRVSNSSGIDTEPQFSADGQSIYFTSDRSGGP 306
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PN 594
+Y M GGE R+T G + S DG+ +A+ S RD G+F++Y + +
Sbjct: 307 QIYRMSVSGGEA---KRVTFGGSYNISPRISSDGKTLAYISRRD----GNFQLYALDLAS 359
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G LR P FSP+GK I++ ++ G + + + +D
Sbjct: 360 GQELRL----SDTANDESPSFSPNGKYIMYATESGRRKSLAV--------------VSVD 401
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +RLT + P WGP
Sbjct: 402 GRVKQRLTTQAGNIKEPTWGP 422
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 26/165 (15%)
Query: 422 SFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS 475
S PS+SP G R+A VY VN+DGS R+V + T + +++ +TS
Sbjct: 241 SAPSWSPDGARLAVALSRDGHTQVYTVNADGSGLRRVSNSSGIDTEPQFSADGQSIYFTS 300
Query: 476 ---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
GGP+ S V G A +R+T G N P +S DGK + + S R
Sbjct: 301 DRSGGPQIYRMS------------VSGGEA-KRVTFGGSYNISPRISSDGKTLAYISRRD 347
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
G LY +D G+ RL++ +D ++SP+G++I +A++
Sbjct: 348 GNFQLYALDLASGQEL---RLSD-TANDESPSFSPNGKYIMYATE 388
>gi|23015569|ref|ZP_00055341.1| COG0823: Periplasmic component of the Tol biopolymer transport
system [Magnetospirillum magnetotacticum MS-1]
Length = 444
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 40/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY+ N D R + + F+ + P V+++
Sbjct: 212 PRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESLGNFPGMTFAPRFSPDGNKVIFS--- 268
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ES +I +N+ R+LT N + PS SPDG+ IVF S R G + L
Sbjct: 269 ---MAESGNTEIYEMNLL----TRQKRQLTYNPAIDTAPSYSPDGQQIVFESDRGGGQQL 321
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A+GG R++ G WSP G+ IAF + G F + ++ +G+G
Sbjct: 322 YVMGADGGNA---TRISFGDGRYATPVWSPRGDLIAFTKQK----GGQFFIGVMRTDGSG 374
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI---FKIKLD 654
R L + P ++P+G+ + F + +P + G++ + I L
Sbjct: 375 ERLLAE---GFLVEGPTWAPNGRVLSFFRE----------SPSDERGRGQVVRLYTIDLT 421
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + +R+ + PAW P
Sbjct: 422 GVN-ERVLLTPIDGSDPAWSP 441
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+++ D DG + R T+G P SP + I + S G +YI + + G L
Sbjct: 189 LSIMDQDGEN--HRFLTDGSELVLTPRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESL 246
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
P +SPDG + F+ SG+ E+Y ++ R+L + + A
Sbjct: 247 GNF---PGMTFAPRFSPDGNKVIFSMAE----SGNTEIYEMNLLTRQKRQLTYNPAIDTA 299
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG+ IVF SD GG +++ + DG + R+ SF DG
Sbjct: 300 --PSYSPDGQQIVFESDRGGGQ--------------QLYVMGADGGNATRI---SFGDGR 340
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 341 YATPVWSPR 349
>gi|15966492|ref|NP_386845.1| translocation protein TolB [Sinorhizobium meliloti 1021]
gi|32699712|sp|Q926C2.1|TOLB_RHIME RecName: Full=Protein TolB; Flags: Precursor
gi|15075763|emb|CAC47318.1| Probable TolB protein precursor [Sinorhizobium meliloti 1021]
Length = 436
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 209 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG IVF S R G + L
Sbjct: 266 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGKQQL 318
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 319 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 371
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 372 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 415
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L Q PAW P
Sbjct: 416 N-EQLVQTQGFASDPAWSP 433
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG ++ R LT + P SP+ + I + S +Y++ E G+ +
Sbjct: 186 LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + ++ G+ +Y + +L + +A
Sbjct: 245 NF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRL--TNTAAIDT 295
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 296 SPSYSPDGSRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGSY 338
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 339 STPVWSPR 346
>gi|398823078|ref|ZP_10581446.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. YR681]
gi|398226252|gb|EJN12506.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. YR681]
Length = 458
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 43/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 223 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ A RLT + PS SPDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----RATTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 332
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 333 YVMAAGGGAAQRISFSKDDTNATYSTPV--WSPKGDYIAFTRQ----GGGQFSIGVMKPD 386
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+G R L ++G N P FSP+G+ ++F D GG S P ++ + +
Sbjct: 387 GSGERLL----TSGYHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLYSVDI 430
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 431 SGRNELKVPTPGFAS-DPAWSP 451
>gi|238920738|ref|YP_002934253.1| Tol-Pal system beta propeller repeat protein TolB, putative
[Edwardsiella ictaluri 93-146]
gi|259533853|sp|C5BEL8.1|TOLB_EDWI9 RecName: Full=Protein TolB; Flags: Precursor
gi|238870307|gb|ACR70018.1| Tol-Pal system beta propeller repeat protein TolB, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSAEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAIRQVASFPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG ++L
Sbjct: 276 ASG---AIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQIYKMNINGGVAQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + SPDGK +V S G I K+ L G++ ++
Sbjct: 329 WEGSQNQDAE--VSPDGKFLVMVSSSAGAQ--------------HIAKLDL-GTNATQVL 371
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 372 TDTFLDETPSIAP 384
>gi|91793532|ref|YP_563183.1| WD-40-like beta propeller repeat-containing protein [Shewanella
denitrificans OS217]
gi|91715534|gb|ABE55460.1| WD40-like beta Propeller [Shewanella denitrificans OS217]
Length = 292
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 422 SFPSFSPKGDRIAFV-EFPG--------VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV 472
S P++SP G +I F E+ ++++N+DGS + Q+ + + P +V
Sbjct: 111 SVPAWSPDGKKIVFAREYKDPEGVFQAEIWLMNADGSKQTQIESLKGSNPHFTP-DGRIV 169
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
++S EF + SE+ I +I DG S V +LT N P VSPDGK I F S R
Sbjct: 170 FSS---EFNDKKSEISIANI-----DG-SKVIQLTDNEAEEWHPEVSPDGKHIAFMSKRD 220
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y+M+++G RLT D+ +WSPD I F D +++Y+++
Sbjct: 221 GNQEIYVMNSDGS---NQKRLTFNNVGDSFPSWSPDSSEILFTHFADT----GWDIYIMN 273
Query: 593 PNGTGLRKLIQSGSA 607
+G+ RK++ A
Sbjct: 274 KDGSSSRKILSGRDA 288
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 36/193 (18%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--------LYIMDA 542
SI+ + DG + R K ++ P+ SPDGK IVF YK+ +++M+A
Sbjct: 88 SIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFARE---YKDPEGVFQAEIWLMNA 144
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+G + + L + +++PDG I F+S+ ++ S E+ + + +G+ + +L
Sbjct: 145 DGSKQTQIESL-----KGSNPHFTPDGR-IVFSSEFNDKKS---EISIANIDGSKVIQL- 194
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ + HP SPDGK I F S G EI+ + DGS+ KRLT
Sbjct: 195 -TDNEAEEWHPEVSPDGKHIAFMSKRDGNQ--------------EIYVMNSDGSNQKRLT 239
Query: 663 QNSFEDGTPAWGP 675
N+ D P+W P
Sbjct: 240 FNNVGDSFPSWSP 252
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+ D EG + +T WSPDG+ IA D+ ++ ++ ++ +GT
Sbjct: 45 IYLTDREGQSSINIPNVT-----GDYVTWSPDGKKIAVRQYHDD--GKTWSIHTMNSDGT 97
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY----GGISAE-----------------P 635
++L + + P +SPDGK IVF +Y G AE
Sbjct: 98 NWKRLTHEKNKWDSV-PAWSPDGKKIVFAREYKDPEGVFQAEIWLMNADGSKQTQIESLK 156
Query: 636 ISTPHQYQPYG-------------EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S PH + P G EI +DGS + +LT N E+ P P
Sbjct: 157 GSNPH-FTPDGRIVFSSEFNDKKSEISIANIDGSKVIQLTDNEAEEWHPEVSP 208
>gi|378768061|ref|YP_005196531.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis LMG 5342]
gi|386015105|ref|YP_005933384.1| protein TolB precursor [Pantoea ananatis AJ13355]
gi|386080163|ref|YP_005993688.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis PA13]
gi|327393166|dbj|BAK10588.1| protein TolB precursor [Pantoea ananatis AJ13355]
gi|354989344|gb|AER33468.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis PA13]
gi|365187544|emb|CCF10494.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea ananatis
LMG 5342]
Length = 431
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G+ ++Y I NG +++
Sbjct: 277 ASGQ---IRQITDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKIGINGGSPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + + DGKS+V S GG + K L ++ LT
Sbjct: 330 WEGAQNQDAD--VASDGKSMVMISTSGGAQ--------------HVAKQDLVTGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKVAY------VTFESGKSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P + + YTS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWFPDSQTLAYTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I ++ + +R+T G N V+ DGK +V ST G +++ D G
Sbjct: 312 APQIYKIGING----GSPQRITWEGAQNQDADVASDGKSMVMISTSGGAQHVAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---AVQTLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|390571179|ref|ZP_10251434.1| translocation protein TolB [Burkholderia terrae BS001]
gi|420247845|ref|ZP_14751231.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
BT03]
gi|389936863|gb|EIM98736.1| translocation protein TolB [Burkholderia terrae BS001]
gi|398069989|gb|EJL61310.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
BT03]
Length = 430
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 154/387 (39%), Gaps = 92/387 (23%)
Query: 328 SPGNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+A T+ P Y+ +L+D V + + VSP++ H + +I
Sbjct: 94 AKGANAFVAGSVTKLPNGQYQVRFKLYDTVNQQSLGGLELVSPESGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + PS SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSAIDTEPSYSPDGQSIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A G G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 308 PQIYKMPAGGESAGGAQRVTFTGNYNTSPRVSPDGKQLAYISRT----GGGFKLYI---- 359
Query: 595 GTGLRKLIQSGSAGRAN------HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ +QSG A P F+ +G+ I++ + G G +
Sbjct: 360 -----QDLQSGVATALTDTTHDESPSFAANGQYILYATQVNG--------------RGVL 400
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG + L+ P+WGP
Sbjct: 401 AAVSTDGRTRQVLSVQGGIVREPSWGP 427
>gi|262193458|ref|YP_003264667.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262076805|gb|ACY12774.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365]
Length = 445
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D DG VR LT N N PS SPDG + F S +LY++ A GG +R+++
Sbjct: 195 DFDG-HGVRSLTRNSSLNILPSWSPDGSKVAFTSYMRNNPDLYVVGAGGGR---PNRISK 250
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP-NGTGLRKLIQSGSAGRA--NH 612
+T +WSPDG IA +D G+ E+Y+I +G L++L RA
Sbjct: 251 QSGMNTGASWSPDGSKIAVTLSKD----GNPEIYIISASSGAILQRLTND----RAIDTS 302
Query: 613 PYFSPDGKSIVFTSD-YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG+ I F SD +GG +IF + G +R+++N + TP
Sbjct: 303 PAWSPDGREIAFVSDRHGGP---------------QIFVMSAAGGSPRRVSRNGSYNTTP 347
Query: 672 AWGPR 676
W PR
Sbjct: 348 VWSPR 352
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYT-- 474
PS+SP G ++AF + P +YVV + G ++ ++ +T W P + T
Sbjct: 213 LPSWSPDGSKVAFTSYMRNNPDLYVVGAGGGRPNRISKQSGMNTGASWSPDGSKIAVTLS 272
Query: 475 -SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
G PE + IIS + + ++RLT + + P+ SPDG+ I F S R G
Sbjct: 273 KDGNPE-------IYIISASSGAI-----LQRLTNDRAIDTSPAWSPDGREIAFVSDRHG 320
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP--DGEWIAFASDRDNPGSGSFEMYLI 591
+++M A GG R++ +T WSP D +A+ + RD G+F++ +
Sbjct: 321 GPQIFVMSAAGGS---PRRVSRNGSYNTTPVWSPRKDKRMLAYTT-RDG---GTFDIVTL 373
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
GTG I G G P FSP+G++I F S+
Sbjct: 374 DL-GTGDMVRITQGQ-GSNEEPSFSPNGRAIAFASE 407
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAF 435
SPD S++ + +DGN ++ + + S L ++ R + P++SP G IAF
Sbjct: 261 SPDGSKIAV------TLSKDGNPEIYIISASSGAILQRLTNDRAIDTSPAWSPDGREIAF 314
Query: 436 VE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREA--VVYTSGGPEFASESSEV 487
V P ++V+++ G + R+V +++T VW P ++ + YT+ +
Sbjct: 315 VSDRHGGPQIFVMSAAGGSPRRVSRNGSYNTTPVWSPRKDKRMLAYTT------RDGGTF 368
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
DI+++++ D V R+T +N PS SP+G+ I F S R +YI +A+G
Sbjct: 369 DIVTLDLGTGDMV----RITQGQGSNEEPSFSPNGRAIAFASERREGAGIYIANADG 421
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 424 PSFSPKGDRIAFV----EFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPV 467
PSFSP G IAF E G+Y+ N+DGS +R+VY A S W P
Sbjct: 393 PSFSPNGRAIAFASERREGAGIYIANADGSGTQRRVYSGVATSIDWGPA 441
>gi|383769445|ref|YP_005448508.1| translocation protein TolB [Bradyrhizobium sp. S23321]
gi|381357566|dbj|BAL74396.1| translocation protein TolB [Bradyrhizobium sp. S23321]
Length = 444
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 43/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 209 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 266 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 318
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 319 YVMSAGGGAAQRISFSKDDTNATYSTPV--WSPRGDYIAFTRQ----GGGQFSIGVMKPD 372
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+G R L ++G N P FSP+G+ ++F D GG +F + +
Sbjct: 373 GSGERLL----TSGYHNEGPTFSPNGRVLMFFRDPGGAGGP------------SLFSVDI 416
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 417 SGRNELKVPTPGFAS-DPAWSP 437
>gi|329904215|ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480]
gi|327548111|gb|EGF32832.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480]
Length = 421
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 37/260 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P++SP G R+A+V F P VYV N R++ N + A ++ G
Sbjct: 195 PAWSPDGTRVAYVSFENKKPVVYVQNL--VTRQRTVLAN-----YKGSNSAPSWSPDGNR 247
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A S + + + DG + +RRLT++ + P S DG+ I F S R+G +Y
Sbjct: 248 LAIALSRDGLTQSYIVNADG-TGLRRLTSSSGIDTEPQFSADGQSIYFTSDRSGGPQIYK 306
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M GG+ R+T + SPDG+ +A+ S RD+ +F++Y + +
Sbjct: 307 MPVSGGDA---QRVTFKGSYNISPRVSPDGKTLAYISRRDS----AFQLYAMDLANGQEQ 359
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
+L S + P FSP+ K I++ ++ G G + + +DG +
Sbjct: 360 RLSDSA---KDESPSFSPNSKYIMYATESG--------------RRGSLAVVSVDGRVKQ 402
Query: 660 RLTQNSFEDGTPAWGPRFIR 679
RLT + + P WGP FI+
Sbjct: 403 RLTTQAGDIREPTWGP-FIK 421
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 39/255 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD +RV Y E+ + ++N+ + + + ++ S PS+SP G+
Sbjct: 193 ISPAWSPDGTRVAYVSF------ENKKPVVYVQNLVTRQRTVLANYKGSNSAPSWSPDGN 246
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A Y+VN+DG+ R++ + T + +++ +TS GGP+
Sbjct: 247 RLAIALSRDGLTQSYIVNADGTGLRRLTSSSGIDTEPQFSADGQSIYFTSDRSGGPQ--- 303
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I + V D +R+T G N P VSPDGK + + S R LY MD
Sbjct: 304 ------IYKMPVSGGDA----QRVTFKGSYNISPRVSPDGKTLAYISRRDSAFQLYAMDL 353
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ RL++ D ++SP+ ++I +A++ GS + ++ +G ++L
Sbjct: 354 ANGQE---QRLSDSA-KDESPSFSPNSKYIMYATESGRRGS----LAVVSVDGRVKQRL- 404
Query: 603 QSGSAGRANHPYFSP 617
+ AG P + P
Sbjct: 405 -TTQAGDIREPTWGP 418
>gi|304395719|ref|ZP_07377602.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB]
gi|440759853|ref|ZP_20938977.1| tolB protein precursor protein [Pantoea agglomerans 299R]
gi|304357013|gb|EFM21377.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB]
gi|436426392|gb|ELP24105.1| tolB protein precursor protein [Pantoea agglomerans 299R]
Length = 431
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGINGGTPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G G+ + DGKS+V S GG + K L+ ++ LT
Sbjct: 330 WEG--GQNQDADVATDGKSMVMISTNGGAQ--------------HVAKQDLETGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|171058627|ref|YP_001790976.1| translocation protein TolB [Leptothrix cholodnii SP-6]
gi|170776072|gb|ACB34211.1| Tol-Pal system beta propeller repeat protein TolB [Leptothrix
cholodnii SP-6]
Length = 427
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V ++V ++DG N + + S W P G E A S
Sbjct: 164 RIAYVSKAANRYTLWVADADGENAQAAVGGPEPIISPAWSP---------NGRELAYVSF 214
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV +++ RR+ N K +N+ P+ SPDG +V TR G LY M G
Sbjct: 215 EARKAVVYVQDV--LTSKRRVIANYKGSNSAPAWSPDGNQLVVTLTRDGLSQLYTMSRTG 272
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G+ L RLT DT WSPDG+ + F SDR G ++Y + G ++ +
Sbjct: 273 GD---LRRLTTSSGIDTEAAWSPDGKSVYFVSDR----GGGPQIYRVAAGGGNAERVTFA 325
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ P SPDG+ + + S G
Sbjct: 326 GNYN--ISPALSPDGRYMAYVSRLNG 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 32/155 (20%)
Query: 529 STRTGY----KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
STR Y N Y + +G GP WSP+G +A+ S
Sbjct: 162 STRIAYVSKAANRYTLWVADADGENAQAAVGGPEPIISPAWSPNGRELAYVS-------- 213
Query: 585 SFE----MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH 640
FE + + T R++I + G + P +SPDG +V T G+S
Sbjct: 214 -FEARKAVVYVQDVLTSKRRVI-ANYKGSNSAPAWSPDGNQLVVTLTRDGLS-------- 263
Query: 641 QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ + G DL+RLT +S D AW P
Sbjct: 264 ------QLYTMSRTGGDLRRLTTSSGIDTEAAWSP 292
>gi|170741556|ref|YP_001770211.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. 4-46]
gi|168195830|gb|ACA17777.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
sp. 4-46]
Length = 442
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFV-----EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P +SP I ++ + P V V+N + R+ + ST + ++ G
Sbjct: 211 PRYSPATQDITYMSQTTGQQPRVQVINLETGARQVIPTHAEMST-------SPRFSPDGR 263
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ SI V D+ A R+T + PS SPDG+ IVF S R G + +Y
Sbjct: 264 RIVMSDQDGGNASIYVMDL-ASKAQTRITNANAIDTSPSFSPDGREIVFESDRGGQQQIY 322
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+M G +G R++ G S + WSP G++IAF R GSF + ++ P+G+G
Sbjct: 323 VM---GADGSNPRRISFGDGSASQPAWSPRGDYIAFTRQR----RGSFAICIMKPDGSGE 375
Query: 599 RKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L + G N P ++P+G+ ++F D GG Q G+++ + + G
Sbjct: 376 RVLTE----GFHNEGPTWAPNGQYVMFFRDPGG------------QAGGKLYMVDVTGRV 419
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ + S+ P W P
Sbjct: 420 EQPVPTPSYAS-DPTWSP 436
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIM 540
S S E + + D DG + VR LT+ P SP + I + S TG + + ++
Sbjct: 178 SGSKERRRKRLAIMDQDGAN-VRYLTSGEAAVVAPRYSPATQDITYMSQTTGQQPRVQVI 236
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ E G + E T +SPDG I SD+D G+ +Y++ +
Sbjct: 237 NLETGARQVIPTHAE---MSTSPRFSPDGRRIVM-SDQDG---GNASIYVMDLASKAQTR 289
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
+ + + P FSPDG+ IVF SD GG +I+ + DGS+ +R
Sbjct: 290 ITNANAID--TSPSFSPDGREIVFESDRGGQQ--------------QIYVMGADGSNPRR 333
Query: 661 LTQNSFEDGT---PAWGPR 676
+ SF DG+ PAW PR
Sbjct: 334 I---SFGDGSASQPAWSPR 349
>gi|339320036|ref|YP_004679731.1| translocation protein TolB [Candidatus Midichloria mitochondrii
IricVA]
gi|338226161|gb|AEI89045.1| translocation protein TolB [Candidatus Midichloria mitochondrii
IricVA]
Length = 433
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 56/302 (18%)
Query: 387 HKCRGGSTR-------EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF- 438
H RG +T+ +DG N LL + K + P F PK R ++ +
Sbjct: 172 HLGRGKNTKKRLAIMDQDGANFKLLTDGKHLVLT----------PRFDPKNQRAIYMSYE 221
Query: 439 ---PGVYVVNSDGSNRRQV-YFKN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493
P VY+++ + +R V +FK +FS + P + + + +I IN
Sbjct: 222 HKVPHVYILDIERGWQRLVGHFKGISFSPRFSPDGNYAIMS------VANYGSTNIFEIN 275
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
++D R + G N PS SPDG IVF S R G +YIM+ G + + ++
Sbjct: 276 LEDGKTTKLTRDI---GAINTSPSYSPDGSKIVFNSDRAGRGQIYIMNRNGSD---ITKI 329
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613
+ G + WSP G++IAF G+F + ++ P+G+G R L S P
Sbjct: 330 SSGSGTYATPVWSPRGDFIAFTKIE----GGTFYIGVMRPDGSGERLLTTS---WLDEGP 382
Query: 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+SP+G+ I+FT +P T + I+ I + G + +RL + PAW
Sbjct: 383 TWSPNGRVIMFTRQ------KPDGTSN-------IYSIDVTGYN-ERLISVETDASDPAW 428
Query: 674 GP 675
P
Sbjct: 429 SP 430
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A +L T+GK+ P P + ++ S ++YI+D E G
Sbjct: 183 LAIMDQDG--ANFKLLTDGKHLVLTPRFDPKNQRAIYMSYEHKVPHVYILDIE----RGW 236
Query: 551 HRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RL G + + +SPDG + A S + + FE+ L T L + I G
Sbjct: 237 QRLV-GHFKGISFSPRFSPDGNY-AIMSVANYGSTNIFEINLEDGKTTKLTRDI-----G 289
Query: 609 RAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
N P +SPDG IVF SD G G+I+ + +GSD+ +++ S
Sbjct: 290 AINTSPSYSPDGSKIVFNSDRAG--------------RGQIYIMNRNGSDITKISSGSGT 335
Query: 668 DGTPAWGPR--FIRPVDVE 684
TP W PR FI +E
Sbjct: 336 YATPVWSPRGDFIAFTKIE 354
>gi|358372530|dbj|GAA89133.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 687
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 137/585 (23%), Positives = 223/585 (38%), Gaps = 125/585 (21%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT---------PYG 215
S++D +LS G L YVST N T ++ +L +G + LT +
Sbjct: 147 SVEDIGVLSPDGNKLAYVSTQGNYTT------NIWVKDLTSGQAQNLTDTEANRADNTWP 200
Query: 216 VADFSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGG 270
F P+ SP G++ +S N W DG + + ++ R DG+ ++ G
Sbjct: 201 TGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQDG 260
Query: 271 WPCWV-----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325
+ D + ++ + E+ + + Q V+ + S+ T + A T
Sbjct: 261 YSLGTPQFSPDGKRIIYNNMTTENTYGC--HGVSAQQEAVTAQIYSVDFATGSNVIAHTS 318
Query: 326 ATSPG-NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN--------PF 376
+ P +I +T + LVK E + P H N P+
Sbjct: 319 GSYPKVGQHYIGNSTN----------IGYLVKAG-DEGIHYTKPDFSHQNFNLTNLRDPW 367
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--------FPSFSP 428
SPD S++ Y + N D+ L+ +D FP +
Sbjct: 368 WSPDGSKLVY----------------WIPNWTQQAADLELWSYDNDWEYRYMDVFPMHNT 411
Query: 429 KGDRIA------------FVEFPGVYVVNSDGSNRRQVYF--------------KNAFST 462
+RIA V +Y D + +Y AF
Sbjct: 412 VINRIASTQKVLGSANGSLVHSSPLYTDVVDALDSYDIYNISNSTEVEWLLEGNSGAFQP 471
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W+P +V + G F S ++ I +G LT N+ FPS SPDG
Sbjct: 472 SWNPDGTELV-SGFGAWFVSRTTNTAKIYRTF--ANGTWHTN-LTDGSDNSGFPSWSPDG 527
Query: 523 KWIVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
IV+R + L+I++ G+ H+LT+G W D WSPDGE I F R+
Sbjct: 528 TAIVYRKWSLATEAPLGLHILNFTTGK---THQLTDG-W-DNTPGWSPDGERIVFT--RN 580
Query: 580 NPGSGS---------FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
N + S F++Y I P+G+ L ++ S S H +S DG+ I++++ G
Sbjct: 581 NNWTESYGARWYADRFDIYTIRPDGSELTRVTDSLS--NDAHAVWSQDGR-IMWSTGMYG 637
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E +QPYG+I + DG++ +T +ED P + P
Sbjct: 638 FKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMP 682
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 441 VYVVNSDGSNRRQVYFK--NAFST--VWDPVREAVVYTSG--GPEFASESSEVDIISINV 494
+++ N+DG+N Q+ NAF W P E +V+TS GP + D+ + V
Sbjct: 81 LWISNADGTNATQLMGNQTNAFDYHPTWSPDGEWIVFTSERRGP------GQSDLYRVRV 134
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL 553
D S + L +SPDG + + ST+ Y N+++ D G+ L
Sbjct: 135 DG----SGLETLAATDSVEDIGVLSPDGNKLAYVSTQGNYTTNIWVKDLTSGQAQNLTD- 189
Query: 554 TEGPWSDTMC-------NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNG 595
TE +D +WSPDGEWI F+SDR+ +G + +Y + P+G
Sbjct: 190 TEANRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDG 249
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+ R +I+ P FSPDGK I++
Sbjct: 250 SDFRTVIRQDGYSLGT-PQFSPDGKRIIY 277
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 521 DGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
+GK +F R G L+I +A+G L + D WSPDGEWI F S+R
Sbjct: 63 EGKKGIFYMNRIGPSGGQLWISNADGTNATQLMGNQTNAF-DYHPTWSPDGEWIVFTSER 121
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
PG ++Y + +G+GL L + S + SPDG + + S G
Sbjct: 122 RGPGQS--DLYRVRVDGSGLETLAATDSV--EDIGVLSPDGNKLAYVSTQG 168
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F +R P G ++++ + +GT +L+ + + HP +SPDG+ IVFTS+ G
Sbjct: 69 FYMNRIGPSGG--QLWISNADGTNATQLMGNQTNAFDYHPTWSPDGEWIVFTSERRG--- 123
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQ-NSFED 668
P Q +++++++DGS L+ L +S ED
Sbjct: 124 -----PGQ----SDLYRVRVDGSGLETLAATDSVED 150
>gi|226330928|ref|ZP_03806446.1| hypothetical protein PROPEN_04851 [Proteus penneri ATCC 35198]
gi|225201723|gb|EEG84077.1| Tol-Pal system beta propeller repeat protein TolB [Proteus penneri
ATCC 35198]
Length = 432
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFVEFP--GVY-----VVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V G Y V + DG N+ +VY + S W P + Y + F S
Sbjct: 168 RIAYVVVTNGGAYPYELRVSDYDGFNQDRVYRSSQPLMSPAWSPDGAKLAYVT----FES 223
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ ++ R++ + ++N PS SPDG + F +++G NLY+MD
Sbjct: 224 GQSALVVQTLATGEI------RQIASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMDL 277
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T G ++T NW PDG+ + + SD+ G ++Y ++ NG ++
Sbjct: 278 ASGN---MTQVTNGRSNNTEPNWMPDGQTLVYTSDQ----GGRPQIYKVNINGGTPERIT 330
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G + +P SPDG +V S G Q+ I K L+ + ++ LT
Sbjct: 331 WEGK--QNQNPAVSPDGSFLVMVSSESG---------RQH-----IAKQDLETNSVQYLT 374
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 375 -DTFLDETPSIAP 386
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F PSFSP G
Sbjct: 205 MSPAWSPDGAKLAY------VTFESGQSALVVQTLATGEIRQIASFPRHNGAPSFSPDGS 258
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
++AF +YV++ N QV + +T W P + +VYTS +
Sbjct: 259 KLAFALSKSGSLNLYVMDLASGNMTQVTNGRSNNTEPNWMPDGQTLVYTS------DQGG 312
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +N++ R+T GK N P+VSPDG ++V S+ +G +++ D E
Sbjct: 313 RPQIYKVNING----GTPERITWEGKQNQNPAVSPDGSFLVMVSSESGRQHIAKQDLETN 368
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 369 S---VQYLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGTI-LQLVSTDGRFKARL--PA 418
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 419 TDGQVKSPAWSP 430
>gi|134074975|emb|CAK39055.1| unnamed protein product [Aspergillus niger]
Length = 649
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 92/211 (43%), Gaps = 35/211 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ DGSN + + N+ F W P + V +TS + DI + ++
Sbjct: 20 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAINGT 75
Query: 498 DGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTE 555
V A V + ++ + S+SPDGK + F ++R + +M E G L LT
Sbjct: 76 STVGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGS---LKNLTL 132
Query: 556 GPWSDTMCN-----------WSPDGEWIAFASDRDNP------GSG-----SFEMYLIHP 593
P N WSPDGEWI F SDR+ P GSG +Y P
Sbjct: 133 IPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARP 192
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
NGT R L+ S S P FSP+GK +VF
Sbjct: 193 NGTDFR-LVSSRSNYTQGSPRFSPNGKRLVF 222
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A+ W P + + G +SS I S+ + G N N FPS
Sbjct: 425 AYQGSWGPNDTNITFGYGAYFVGRQSSPGFIFSVTPE---GTGVTLLAGNNITNYGFPSY 481
Query: 519 SPDGKWIVFRS--------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ DG +VFR+ T G L I+D + + +LT W D + +SPDG+
Sbjct: 482 NYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQ---VTQLTT-EW-DNLPAFSPDGK 536
Query: 571 WIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
I F ++ DN G +++++ ++P+G+ L KL S ++ H ++ DG+ + T+ +
Sbjct: 537 KILFTRRTNLDNIGD-NYDIFTMNPDGSELTKLTPSIASDA--HAVWTQDGRILYSTAMF 593
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDV 683
G P+ QPY I ++ DGS+ L+ + +ED P + P + D
Sbjct: 594 GFQQEAPLYD-DSMQPYAIIMLMEADGSNKTALSNSLWEDAMPMFAPAHVMESDC 647
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYG-- 549
+ + DG +A L +N + S SPD K + F S R G ++Y + G G
Sbjct: 22 IAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAE 81
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---------GSFEMYLIHPNGTGLRK 600
+ + P D + SPDG+ +AFA+ R N S GS + + P G+ +
Sbjct: 82 VEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIP---GISE 138
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG---------EIFKI 651
S P +SPDG+ IVFTSD +TP + G I+
Sbjct: 139 AANSALPNGYFKPTWSPDGEWIVFTSDR--------NTPWRGHSDGSGWEHTQELSIYAA 190
Query: 652 KLDGSDLKRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNE 689
+ +G+D + ++ S + G+P + P R V E + +
Sbjct: 191 RPNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTED 229
>gi|431805696|ref|YP_007232597.1| tolB protein precursor [Liberibacter crescens BT-1]
gi|430799671|gb|AGA64342.1| tolB protein precursor [Liberibacter crescens BT-1]
Length = 430
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 43/260 (16%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + G VY++ + R V + FS + P + ++ +
Sbjct: 203 PRFSPNRQEITYMSYEGQQPRVYLLQLETGQREIVGNFPGMTFSPRFSPDGQRIIMS--- 259
Query: 478 PEFASESSEVDIISINVDDVDGVSAVR-RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
E + N+ +D S V R+T+ + PS SPDG IVF S R G +
Sbjct: 260 --LQREGNS------NIYAMDLRSRVTTRITSTDAIDTSPSYSPDGSQIVFESDRGGRQQ 311
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M+A+G G HR++ G S + WSP G +IAF SG F + ++ +G+
Sbjct: 312 LYVMNADGS---GQHRISFGEGSYSTPVWSPKGNFIAFTKQ----SSGKFSIGVMKSDGS 364
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L ++G N P ++P+G++++F G +++ I L G
Sbjct: 365 GERIL----TSGFHNEGPTWAPNGRALMFFRQNAGAGGP------------QLYSIDLTG 408
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+ ++ S+ PAW P
Sbjct: 409 YNEVHISTPSYAS-DPAWSP 427
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + R+ T+G N P SP+ + I + S +Y++ E G+
Sbjct: 180 LGIMDQDGFNV--RMLTSGNNIVLTPRFSPNRQEITYMSYEGQQPRVYLLQLETGQ---R 234
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SPDG+ I + R+ G+ +Y + ++ + + +
Sbjct: 235 EIVGNFPGMTFSPRFSPDGQRIIMSLQRE----GNSNIYAMDLRSRVTTRITSTDAIDTS 290
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF SD GG +++ + DGS R++ T
Sbjct: 291 --PSYSPDGSQIVFESDRGGRQ--------------QLYVMNADGSGQHRISFGEGSYST 334
Query: 671 PAWGPR 676
P W P+
Sbjct: 335 PVWSPK 340
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP + I R S+ ++L V TR S +P
Sbjct: 241 PGM-TFSPRFSPDGQRIIMSLQREGNSNIYAMDLRSRVT------TRITSTDAIDTSPSY 293
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSFPSFSPKGDRIAFV 436
SPD S++ + RG G QL + N S IS S P +SPKG+ IAF
Sbjct: 294 SPDGSQIVFESDRG------GRQQLYVMNADGSGQHRISFGEGSYSTPVWSPKGNFIAFT 347
Query: 437 EFP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
+ + V+ SDGS R + F N T W P A+++ +GGP+ S
Sbjct: 348 KQSSGKFSIGVMKSDGSGERILTSGFHNEGPT-WAPNGRALMFFRQNAGAGGPQLYS 403
>gi|345873816|ref|ZP_08825704.1| Protein tolB [Thiorhodococcus drewsii AZ1]
gi|343916842|gb|EGV27672.1| Protein tolB [Thiorhodococcus drewsii AZ1]
Length = 436
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 48/262 (18%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA-- 481
P++SP G RIA+V F NRR + S+ + + + P F+
Sbjct: 210 PAWSPDGRRIAYVSF----------ENRRAAIYVQELSSGRRDLVASYPGINSSPAFSPD 259
Query: 482 --------SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
S+ +I S+N+ + + RLT + + P+ SPDG+ I+F S R G
Sbjct: 260 GLRLAMTLSKDGNPEIYSLNLLSRELI----RLTDHYAIDTEPAWSPDGRSIIFTSDRGG 315
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y M A GG R++ + ++SPDG IA + R N GSF + ++
Sbjct: 316 SPQIYRMSATGGPA---ERISIDGDYNGRASYSPDGRSIAMVT-RIN---GSFRIGVLDL 368
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+ G+ +L+ SG + P F+P+G +++ + YGG G + +
Sbjct: 369 D-RGIMRLVSSGDLDES--PSFAPNGSMVIYATIYGG--------------RGVLAAASV 411
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG +RL+Q+S + PAW P
Sbjct: 412 DGGGNQRLSQDSGQVREPAWSP 433
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
+S S + +++ V D DG A + + ++G+ P+ SPDG+ I + S +Y+
Sbjct: 176 SSGSGDSQTVTLKVADADGY-APQTIVSSGEPIMSPAWSPDGRRIAYVSFENRRAAIYVQ 234
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ G + P ++ +SPDG +A +D G+ E+Y ++ L +
Sbjct: 235 ELSSGR---RDLVASYPGINSSPAFSPDGLRLAMTLSKD----GNPEIYSLNLLSRELIR 287
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
L + P +SPDG+SI+FTSD GG +P +I+++ G +R
Sbjct: 288 LTDHYAID--TEPAWSPDGRSIIFTSDRGG-------SP-------QIYRMSATGGPAER 331
Query: 661 LTQNSFEDGTPAWGP 675
++ + +G ++ P
Sbjct: 332 ISIDGDYNGRASYSP 346
>gi|344171093|emb|CCA83558.1| protein tolB, component of the tol-pal system [blood disease
bacterium R229]
Length = 413
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 113/263 (42%), Gaps = 47/263 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDP--VREAVVYTS 475
PS+SP G ++A+V F P VYV + R + + N + W P R AV +
Sbjct: 184 PSWSPDGTKVAYVSFESRKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVALSR 243
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I +N D S +RRLT + + PS SPDG+ I F S R G
Sbjct: 244 DG--------NTQIYLVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAP 291
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIH 592
+Y M EG + R+T +T SPDG+ +A+ S G+F++Y L +
Sbjct: 292 QIYRMPVEGEDAGSAQRVTFKGSYNTSPRMSPDGKLLAYISRV----GGAFKLYVQDLSN 347
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+ TGL S P F+ +GK I++ + GG S + +
Sbjct: 348 GDVTGLTDTAYDES------PSFAANGKFILYATRVGGRSV--------------LAAVS 387
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ + E PAWGP
Sbjct: 388 TDGRTRQILSLQAGEVREPAWGP 410
>gi|384537324|ref|YP_005721409.1| translocation protein TolB [Sinorhizobium meliloti SM11]
gi|336034216|gb|AEH80148.1| translocation protein TolB [Sinorhizobium meliloti SM11]
Length = 455
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 228 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 284
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG IVF S R G + L
Sbjct: 285 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGKQQL 337
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 338 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 390
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 391 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 434
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L Q PAW P
Sbjct: 435 N-EQLVQTQGFASDPAWSP 452
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG ++ R LT + P SP+ + I + S +Y++ E G+ +
Sbjct: 205 LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 263
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + ++ G+ +Y + +L + +A
Sbjct: 264 NF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRL--TNTAAIDT 314
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 315 SPSYSPDGSRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGSY 357
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 358 STPVWSPR 365
>gi|291616740|ref|YP_003519482.1| TolB [Pantoea ananatis LMG 20103]
gi|291151770|gb|ADD76354.1| TolB [Pantoea ananatis LMG 20103]
Length = 453
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 189 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 244
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 245 GKSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 298
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G+ ++Y I NG +++
Sbjct: 299 ASGQ---IRQITDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKIGINGGSPQRIT 351
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + + DGKS+V S GG
Sbjct: 352 WEGAQNQDAD--VASDGKSMVMISTSGG 377
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 226 MSPAWSPDGSKVAY------VTFESGKSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 279
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P + + YTS ++
Sbjct: 280 KLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWFPDSQTLAYTS------DQAG 333
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I ++ + +R+T G N V+ DGK +V ST G +++ D G
Sbjct: 334 APQIYKIGING----GSPQRITWEGAQNQDADVASDGKSMVMISTSGGAQHVAKQDLVTG 389
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 390 ---AVQTLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 439
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 440 TDGQVKFPAWSP 451
>gi|395491036|ref|ZP_10422615.1| translocation protein TolB [Sphingomonas sp. PAMC 26617]
Length = 466
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 44/251 (17%)
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
PKG RI + +++ DG N R + A + P + ++VY S + ++
Sbjct: 208 PKGHRIKRLA-----IMDQDGENHRFLTNGQAIALTPRLSPDQRSIVYMS----YLNDRP 258
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ + D S +RL + F P VSPD +W++F R G ++Y + G
Sbjct: 259 AIYVY-------DLASGRQRLLVGNTDLTFAPRVSPDSRWVLFSMARAGNTDIYRVPLSG 311
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G RLT+ DT +SPDG IAF SDR SG+ ++Y+++ +G+ +++ S
Sbjct: 312 GT---PQRLTQSTAIDTGGTYSPDGSRIAFESDR----SGTQQLYVMNADGSQQQRI--S 362
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
+GR P +SP G I +T G +S P G K+ DGS
Sbjct: 363 FGSGRYATPVWSPRGDLIAYTKIGGSFRIGVMS------PAGGNEKLLTDGS-------- 408
Query: 665 SFEDGTPAWGP 675
+D P+W P
Sbjct: 409 --QDEGPSWSP 417
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N ++ I+L P SP I ++ + P +YV + S R
Sbjct: 221 QDGENHRFLTNGQA----IALT------PRLSPDQRSIVYMSYLNDRPAIYVYDL-ASGR 269
Query: 452 RQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+++ N F+ P V+++ + + DI + + +RLT
Sbjct: 270 QRLLVGNTDLTFAPRVSPDSRWVLFS------MARAGNTDIYRVPLSG----GTPQRLTQ 319
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ + + SPDG I F S R+G + LY+M+A+G + R++ G WSP
Sbjct: 320 STAIDTGGTYSPDGSRIAFESDRSGTQQLYVMNADGSQ---QQRISFGSGRYATPVWSPR 376
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ IA+ GSF + ++ P G G KL+ GS + P +SP+G+ ++F
Sbjct: 377 GDLIAYTKI-----GGSFRIGVMSPAG-GNEKLLTDGS--QDEGPSWSPNGRVLMFFRST 428
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT-PAWGPRFIRP 680
GG S + +++ + L G +++R+ + DG+ PAWGP +RP
Sbjct: 429 GGGSGK-----------ADLWSVDLTGVNVRRVP--TVLDGSDPAWGP--LRP 466
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 46/239 (19%)
Query: 322 AFTPATSPGNNKFIAVA--TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP 379
A TP SP + ++ RP I ++DL + L V P +SP
Sbjct: 236 ALTPRLSPDQRSIVYMSYLNDRPA-----IYVYDLASGRQRLL---VGNTDLTFAPRVSP 287
Query: 380 DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP-----SFSPKGDRIA 434
DS V + R G+T + + PL + R S ++SP G RIA
Sbjct: 288 DSRWVLFSMARAGNT----------DIYRVPLSGGTPQRLTQSTAIDTGGTYSPDGSRIA 337
Query: 435 FVE----FPGVYVVNSDGSNRRQVYFKNA-FST-VWDPVREAVVYTSGGPEFASESSEVD 488
F +YV+N+DGS ++++ F + ++T VW P + + YT G F +
Sbjct: 338 FESDRSGTQQLYVMNADGSQQQRISFGSGRYATPVWSPRGDLIAYTKIGGSF-----RIG 392
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV-FRST--RTGYKNLYIMDAEG 544
++S +L T+G + PS SP+G+ ++ FRST +G +L+ +D G
Sbjct: 393 VMSP-------AGGNEKLLTDGSQDEGPSWSPNGRVLMFFRSTGGGSGKADLWSVDLTG 444
>gi|386334287|ref|YP_006030458.1| protein tolb precursor [Ralstonia solanacearum Po82]
gi|334196737|gb|AEG69922.1| protein tolb precursor [Ralstonia solanacearum Po82]
Length = 431
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 129/305 (42%), Gaps = 58/305 (19%)
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
S+VG H S + N Q+ L S P IS PS+SP G ++A+V F
Sbjct: 171 SKVGRHYQLQISDSDGANPQIAL---TSNEPIIS--------PSWSPDGTKVAYVSFESR 219
Query: 439 -PGVYVVNSDGSNRRQVYFK--NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISIN 493
P VYV + R V + N + W P R AV + G I +N
Sbjct: 220 KPVVYVHDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDG--------NTQIYLVN 271
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
D S +RRLT + + PS SPDG+ I F S R G +Y M EG + G R+
Sbjct: 272 ADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRMPVEGEDAGGAQRV 327
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLRKLIQSGSAGRA 610
T +T SPDG+ +A+ + G+F++Y L + + TGL S
Sbjct: 328 TFKGGYNTSPRISPDGKLLAYIARV----GGAFKLYVQDLSNGDVTGLTDTSYDES---- 379
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P F+ +GK I++ + GG S + + DG + L+ + +
Sbjct: 380 --PSFAANGKFILYATRVGGRSV--------------LAAVSTDGRTRQILSLQAGQVRE 423
Query: 671 PAWGP 675
PAWGP
Sbjct: 424 PAWGP 428
>gi|332188231|ref|ZP_08389959.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp.
S17]
gi|332011730|gb|EGI53807.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp.
S17]
Length = 472
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 53/292 (18%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N +S I L P F+P I ++ + P +YV + GS R
Sbjct: 227 QDGANHRFLTNGQS----IVLT------PRFAPNQQSIVYMSYVDKRPAIYVYDI-GSGR 275
Query: 452 RQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+++ +NA F+ + P ++++ ++ DI ++ +RLT
Sbjct: 276 QRLVVQNAATTFAPRFSPDGRWILFS------MAQGGNTDIYRVSAQG----GTPQRLTN 325
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ + S SPDG IVF S R+G + +Y+M+A+G R++ G WSP
Sbjct: 326 SPGIDTGGSYSPDGSKIVFESDRSGGQQIYVMNADGSN---QQRISFGGGRYATPVWSPR 382
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ IAF G+F + +++P+G G KL+ ++ + P +SP+G+ I F
Sbjct: 383 GDLIAFTKL-----GGAFRIGIMNPSG-GAEKLLT--NSWQDEGPSWSPNGRVITFQRTT 434
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
G S + +++ + L G + +R+ + PAWGP +RP
Sbjct: 435 QGSSGK-----------ADVWMVDLTGVNERRIP-TPLDGSDPAWGP--LRP 472
>gi|334317496|ref|YP_004550115.1| protein tolB [Sinorhizobium meliloti AK83]
gi|384530622|ref|YP_005714710.1| protein tolB [Sinorhizobium meliloti BL225C]
gi|407721805|ref|YP_006841467.1| protein TolB [Sinorhizobium meliloti Rm41]
gi|418400229|ref|ZP_12973772.1| translocation protein TolB [Sinorhizobium meliloti CCNWSX0020]
gi|333812798|gb|AEG05467.1| Protein tolB [Sinorhizobium meliloti BL225C]
gi|334096490|gb|AEG54501.1| Protein tolB [Sinorhizobium meliloti AK83]
gi|359505905|gb|EHK78424.1| translocation protein TolB [Sinorhizobium meliloti CCNWSX0020]
gi|407320037|emb|CCM68641.1| Protein TolB [Sinorhizobium meliloti Rm41]
Length = 434
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 207 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 263
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG IVF S R G + L
Sbjct: 264 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGKQQL 316
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 317 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 369
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 370 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 413
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L Q PAW P
Sbjct: 414 N-EQLVQTQGFASDPAWSP 431
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG ++ R LT + P SP+ + I + S +Y++ E G+ +
Sbjct: 184 LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 242
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + ++ G+ +Y + +L + +A
Sbjct: 243 NF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRL--TNTAAIDT 293
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 294 SPSYSPDGSRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGSY 336
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 337 STPVWSPR 344
>gi|187251684|ref|YP_001876166.1| putative Tol biopolymer transport system protein [Elusimicrobium
minutum Pei191]
gi|186971844|gb|ACC98829.1| Putative component of the Tol biopolymer transport system
[Elusimicrobium minutum Pei191]
Length = 428
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 18/153 (11%)
Query: 420 DGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKN-AFSTVWDPVREAVVY 473
DGS PS+SP G I FV P +YV++ +GS RR N A + W P E +V
Sbjct: 287 DGS-PSYSPDGRFITFVSNRSGNPQIYVMDLQNGSTRRITSSLNWADTPQWSPTGEWIV- 344
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
FA ++ + I I + D+ G + +R+LT++ NN P+ SPDG++I F +TR G
Sbjct: 345 ------FAGRTAAQNPIDIFLVDITG-TQIRQLTSDSANNEDPTWSPDGRFIAFTTTRKG 397
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
+ LY+MDA+G H L + P + +WS
Sbjct: 398 RRQLYVMDADGS---APHLLADIPGNSYTPHWS 427
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMC 563
+LT + PS SPDG++I F S R+G +Y+MD + G R+T W+DT
Sbjct: 279 QLTDKAGVDGSPSYSPDGRFITFVSNRSGNPQIYVMDLQNGS---TRRITSSLNWADT-P 334
Query: 564 NWSPDGEWIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
WSP GEWI FA + NP +++L+ GT +R+L + + P +SPDG+
Sbjct: 335 QWSPTGEWIVFAGRTAAQNP----IDIFLVDITGTQIRQL--TSDSANNEDPTWSPDGRF 388
Query: 622 IVFTSDYGG 630
I FT+ G
Sbjct: 389 IAFTTTRKG 397
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 42/256 (16%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
RIAF +Y+ + DG+N +++ + + + ++ +Y + + ++ +V
Sbjct: 167 RIAFANSATGNKEIYIADYDGANLKKLTTDRSIALLPRWSKDGKIYYT---SYRYKNPDV 223
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGG 545
I + V V+ + L G VSPDG+ I+ TR+G N ++ ++ E G
Sbjct: 224 FSIDLAAGKVSPVAITKGLELIG------GVSPDGRSIIL--TRSGGTNPSIFEINLETG 275
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ D ++SPDG +I F S+R SG+ ++Y++ R++ +
Sbjct: 276 KSV---QLTDKAGVDGSPSYSPDGRFITFVSNR----SGNPQIYVMDLQNGSTRRI--TS 326
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAE-PISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
S A+ P +SP G+ IVF G +A+ PI +IF + + G+ +++LT +
Sbjct: 327 SLNWADTPQWSPTGEWIVFA---GRTAAQNPI----------DIFLVDITGTQIRQLTSD 373
Query: 665 SFEDGTPAWGP--RFI 678
S + P W P RFI
Sbjct: 374 SANNEDPTWSPDGRFI 389
>gi|83746171|ref|ZP_00943225.1| TolB protein [Ralstonia solanacearum UW551]
gi|83727137|gb|EAP74261.1| TolB protein [Ralstonia solanacearum UW551]
Length = 434
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 129/305 (42%), Gaps = 58/305 (19%)
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
S+VG H S + N Q+ L S P IS PS+SP G ++A+V F
Sbjct: 174 SKVGRHYQLQISDSDGANPQIAL---TSNEPIIS--------PSWSPDGTKVAYVSFESR 222
Query: 439 -PGVYVVNSDGSNRRQVYFK--NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISIN 493
P VYV + R V + N + W P R AV + G I +N
Sbjct: 223 KPVVYVHDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDG--------NTQIYLVN 274
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
D S +RRLT + + PS SPDG+ I F S R G +Y M EG + G R+
Sbjct: 275 ADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRMPVEGEDAGGAQRV 330
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLRKLIQSGSAGRA 610
T +T SPDG+ +A+ + G+F++Y L + + TGL S
Sbjct: 331 TFKGGYNTSPRISPDGKLLAYIARV----GGAFKLYVQDLSNGDVTGLTDTSYDES---- 382
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P F+ +GK I++ + GG S + + DG + L+ + +
Sbjct: 383 --PSFAANGKFILYATRVGGRSV--------------LAAVSTDGRTRQILSLQAGQVRE 426
Query: 671 PAWGP 675
PAWGP
Sbjct: 427 PAWGP 431
>gi|409124619|ref|ZP_11224014.1| tolB protein [Gillisia sp. CBA3202]
Length = 312
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
Query: 431 DRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTS---GGPEFA 481
+ IAFV +Y+++ +G N R + ++ FS W + + + S G PE
Sbjct: 32 EEIAFVTARDGNSEIYIMDINGKNLRNITKNDSLDFSPAWSSDSQNIYFYSKRDGNPE-- 89
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIM 540
I SIN + D ++RLT + + P +SPDGK IVF S R +N+Y+M
Sbjct: 90 -------IYSINSNGTD----LKRLTNHLAADILPEISPDGKKIVFMSERDSLSRNIYLM 138
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA----SDRDNPGSGSFEMYLIHPNGT 596
D +G + LT+ + + +WS G I F D + + E++++
Sbjct: 139 DKDGS---NIKPLTQNKYYEESPSWSITGREILFTRQLRDSLDTTHAANGEIHIMDLRTK 195
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+R+L + G + FSP+GK I F YG + + ++F + DG+
Sbjct: 196 NVRRL--TNKIGYDSGAKFSPNGKEIAF---YG-----------SNKGFWDLFIMNSDGT 239
Query: 657 DLKRLTQNSFEDGTPAW 673
+L LT +S E +P W
Sbjct: 240 NLYNLTNDSIECYSPDW 256
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 26/205 (12%)
Query: 423 FPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTS 475
P SP G +I F+ +Y+++ DGSN + + + S W +++T
Sbjct: 112 LPEISPDGKKIVFMSERDSLSRNIYLMDKDGSNIKPLTQNKYYEESPSWSITGREILFTR 171
Query: 476 GGPEFA----SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
+ + + E+ I+ + +V RRLT ++ SP+GK I F +
Sbjct: 172 QLRDSLDTTHAANGEIHIMDLRTKNV------RRLTNKIGYDSGAKFSPNGKEIAFYGSN 225
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G+ +L+IM+++G L+ LT +WS DG+W+ + + G++ ++ I
Sbjct: 226 KGFWDLFIMNSDGT---NLYNLTNDSIECYSPDWSADGKWLVYTA----GNKGNYNIWKI 278
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFS 616
N ++ + + GR P +S
Sbjct: 279 --NIATKERINLTNTTGRNESPVWS 301
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
E IAF + RD G+ E+Y++ NG LR + ++ S + P +S D ++I F S
Sbjct: 32 EEIAFVTARD----GNSEIYIMDINGKNLRNITKNDSLDFS--PAWSSDSQNIYFYSKRD 85
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G P EI+ I +G+DLKRLT + D P P
Sbjct: 86 G------------NP--EIYSINSNGTDLKRLTNHLAADILPEISP 117
>gi|309780840|ref|ZP_07675581.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp.
5_7_47FAA]
gi|404394254|ref|ZP_10986058.1| protein tolB [Ralstonia sp. 5_2_56FAA]
gi|308920522|gb|EFP66178.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp.
5_7_47FAA]
gi|348613389|gb|EGY62979.1| protein tolB [Ralstonia sp. 5_2_56FAA]
Length = 434
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 37/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VYV + R + + N + W P V +
Sbjct: 205 PSWSPDGTKVAYVSFESKKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVS--- 261
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S +RRL+ + + PS SPDG++I F S R G +
Sbjct: 262 ---LSRDGNTQVYLVNADG----SGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQI 314
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M +G E R+T +T SPDG+ +A+ S G+F +Y +
Sbjct: 315 YRMSVDGEEAGAAQRVTFKGNYNTSPRVSPDGKLLAYISRV----GGAFRLYTQDLSNGD 370
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG S + + DG
Sbjct: 371 VNALTDTSN---DESPSFAANGKFILYATRVGGKSV--------------LAAVSTDGRT 413
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ + E PAWGP
Sbjct: 414 RQVLSLQAGEVREPAWGP 431
>gi|207744076|ref|YP_002260468.1| protein tolb precursor [Ralstonia solanacearum IPO1609]
gi|421900228|ref|ZP_16330591.1| protein tolb precursor [Ralstonia solanacearum MolK2]
gi|206591434|emb|CAQ57046.1| protein tolb precursor [Ralstonia solanacearum MolK2]
gi|206595480|emb|CAQ62407.1| protein tolb precursor [Ralstonia solanacearum IPO1609]
Length = 432
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 129/305 (42%), Gaps = 58/305 (19%)
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
S+VG H S + N Q+ L S P IS PS+SP G ++A+V F
Sbjct: 172 SKVGRHYQLQISDSDGANPQIAL---TSNEPIIS--------PSWSPDGTKVAYVSFESR 220
Query: 439 -PGVYVVNSDGSNRRQVYFK--NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISIN 493
P VYV + R V + N + W P R AV + G I +N
Sbjct: 221 KPVVYVHDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDG--------NTQIYLVN 272
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
D S +RRLT + + PS SPDG+ I F S R G +Y M EG + G R+
Sbjct: 273 ADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRMPVEGEDAGGAQRV 328
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLRKLIQSGSAGRA 610
T +T SPDG+ +A+ + G+F++Y L + + TGL S
Sbjct: 329 TFKGGYNTSPRISPDGKLLAYIARV----GGAFKLYVQDLSNGDVTGLTDTSYDES---- 380
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P F+ +GK I++ + GG S + + DG + L+ + +
Sbjct: 381 --PSFAANGKFILYATRVGGRSV--------------LAAVSTDGRTRQILSLQAGQVRE 424
Query: 671 PAWGP 675
PAWGP
Sbjct: 425 PAWGP 429
>gi|163758790|ref|ZP_02165877.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43]
gi|162284080|gb|EDQ34364.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43]
Length = 450
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 223 PRFSPSRQEITYMSFEGGQPRVYLLQLETGQRELVGNFPGMTFSPRFSPDGQKVIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ A RLT+ + PS SPDG IVF S R G + L
Sbjct: 280 ---LQQDGNANIYTMDLRS----RATTRLTSTAAIDTSPSYSPDGTQIVFESDRGGRQQL 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM+A+G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 333 YIMNADGSNQ---RRVSFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMRTDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +I+ I L G
Sbjct: 386 ERIL----TTGFHNEGPTWAPNGRVLMFFRQPAGAGGP------------QIYSIDLTGY 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + ++ +F PAW P
Sbjct: 430 NEQLVSTPTFAS-DPAWSP 447
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR LT P SP + I + S G +Y++ E G+
Sbjct: 200 LAIMDQDGAN-VRMLTDASSIVLTPRFSPSRQEITYMSFEGGQPRVYLLQLETGQ---RE 255
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ P +SPDG+ + + +D G+ +Y + +L + +A
Sbjct: 256 LVGNFPGMTFSPRFSPDGQKVIMSLQQD----GNANIYTMDLRSRATTRL--TSTAAIDT 309
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS+ +R+ SF DG
Sbjct: 310 SPSYSPDGTQIVFESDRGG--------------RQQLYIMNADGSNQRRV---SFGDGSY 352
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 353 STPVWSPR 360
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 38/183 (20%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR S +P
Sbjct: 261 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRATTRLTSTAAIDTSPSY 313
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD +++ + RGG + DG+NQ + DGS+ P +SP+G
Sbjct: 314 SPDGTQIVFESDRGGRQQLYIMNADGSNQRRVSF------------GDGSYSTPVWSPRG 361
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ +DGS R + F N T W P +++ +GGP+
Sbjct: 362 DLIAFTKQSGGKFSIGVMRTDGSGERILTTGFHNEGPT-WAPNGRVLMFFRQPAGAGGPQ 420
Query: 480 FAS 482
S
Sbjct: 421 IYS 423
>gi|433614571|ref|YP_007191369.1| tol-pal system beta propeller repeat protein TolB [Sinorhizobium
meliloti GR4]
gi|429552761|gb|AGA07770.1| tol-pal system beta propeller repeat protein TolB [Sinorhizobium
meliloti GR4]
Length = 434
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 207 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 263
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG IVF S R G + L
Sbjct: 264 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGKQQL 316
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 317 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 369
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 370 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 413
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L Q PAW P
Sbjct: 414 N-EQLVQTQGFASDPAWSP 431
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG ++ R LT + P SP+ + I + S +Y++ E G+ +
Sbjct: 184 LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 242
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + ++ G+ +Y + +L + +A
Sbjct: 243 NF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRL--TNTAAIDT 293
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 294 SPSYSPDGSRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGSY 336
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 337 STPVWSPR 344
>gi|440750660|ref|ZP_20929901.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
gi|436480878|gb|ELP37090.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
Length = 1079
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 20/165 (12%)
Query: 485 SEVDIISINVDDVDGVSAVR----RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
S+ I+ ++ +D+ V+ RLT+N + + P SPDGKWI F G ++Y +
Sbjct: 31 SQEHIVFVHANDLWRVAKTGGEAIRLTSNEGSESLPKFSPDGKWIAFTGQYDGNTDVYAI 90
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
EGGE RLT P +D + W+PDG+ I F S R+N + + Y I P G+ +
Sbjct: 91 PTEGGEP---KRLTWHPGADLVSGWTPDGKNILFTSSRENVPTRESKFYQI-PLAGGMEE 146
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTS---------DYGGISAEPI 636
+ RA + SPDGKSI + +Y G A+PI
Sbjct: 147 AL---PIPRAVNGEISPDGKSIAYQQIAFWDPEWRNYRGGQAKPI 188
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 425 SFSPKGDRIAFVEFPG-VYVVNSDGSNRRQVYFKNAF---STVWDPVREAVVYTSGGPEF 480
S SP G R F EF G + V + + R + + S VW P + + + F
Sbjct: 310 SLSPTGQRAVF-EFRGEIITVPKEKGDARNITNTSGIADRSPVWSPDGQQIAW------F 362
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF---PSVSPDGKWIVFRSTRTGYKNL 537
+ ES E ++ V D +G+S + + NN+F P +PDGK + F T T Y NL
Sbjct: 363 SDESGEYQLM---VGDQEGLSKPKAIKL--PNNSFYFRPEWAPDGKHLAF--TDTDY-NL 414
Query: 538 YIMD-AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+I++ A G P WSPD +W+A+A DN F+ + T
Sbjct: 415 WIVNVATGAAKIADTDRFAHPNRSLNPVWSPDSKWVAYARLLDN----QFKAIFTYQIET 470
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
G +K+ + S A P + +G+ + F +
Sbjct: 471 G-KKIQITDSMADAITPIWDANGEYLYFLA 499
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 28/206 (13%)
Query: 425 SFSPKGDRIAFVEFPGVY-VVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
SF PK + + F + V N DG+ VY + F + +P
Sbjct: 233 SFDPKSNDLKQETFHADFDVKNLDGNGTEIVYEQGGFLHLLNPA---------------- 276
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ + + INV + R NG++ S+SP G+ VF + + E
Sbjct: 277 TGKSQKLEINVRGDFHWARERWQPVNGRSLTNASLSPTGQRAVFEFR----GEIITVPKE 332
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G+ + T G +D WSPDG+ IA+ SD SG +++ + G K I+
Sbjct: 333 KGDARNITN-TSGI-ADRSPVWSPDGQQIAWFSDE----SGEYQLMVGDQEGLSKPKAIK 386
Query: 604 SGSAGRANHPYFSPDGKSIVFT-SDY 628
+ P ++PDGK + FT +DY
Sbjct: 387 LPNNSFYFRPEWAPDGKHLAFTDTDY 412
>gi|344173935|emb|CCA89122.1| protein tolB, component of the tol-pal system [Ralstonia syzygii
R24]
Length = 433
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 110/261 (42%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VYV + R + + N + W P V
Sbjct: 204 PSWSPDGTKVAYVSFESRKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVA--- 260
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S I +N D S +RRLT + + PS SPDG+ I F S R G +
Sbjct: 261 ---LSRDGNTQIYLVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI 313
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPN 594
Y M EG + R+T +T SPDG+ +A+ S G+F++Y L + +
Sbjct: 314 YRMPVEGEDAGSAQRVTFKGGYNTSPRMSPDGKLLAYISRV----GGAFKLYVQDLSNGD 369
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
TGL S P F+ +GK I++ + GG S + + D
Sbjct: 370 VTGLTDTAYDES------PSFAANGKFILYATRVGGRSV--------------LAAVSTD 409
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + L+ + E PAWGP
Sbjct: 410 GRTRQILSLQAGEVREPAWGP 430
>gi|317038874|ref|XP_003188680.1| hypothetical protein ANI_1_2282184 [Aspergillus niger CBS 513.88]
Length = 319
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 92/211 (43%), Gaps = 35/211 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ DGSN + + N+ F W P + V +TS + DI + ++
Sbjct: 55 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAINGT 110
Query: 498 DGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTE 555
V A V + ++ + S+SPDGK + F ++R + +M E G L LT
Sbjct: 111 STVGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGS---LKNLTL 167
Query: 556 GPWSDTMCN-----------WSPDGEWIAFASDRDNP------GSG-----SFEMYLIHP 593
P N WSPDGEWI F SDR+ P GSG +Y P
Sbjct: 168 IPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARP 227
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
NGT R L+ S S P FSP+GK +VF
Sbjct: 228 NGTDFR-LVSSRSNYTQGSPRFSPNGKRLVF 257
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYG--LHRL 553
DG +A L +N + S SPD K + F S R G ++Y + G G + +
Sbjct: 61 DGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAEVEPV 120
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGS---------GSFEMYLIHPNGTGLRKLIQS 604
P D + SPDG+ +AFA+ R N S GS + + P G+ + S
Sbjct: 121 ASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIP---GISEAANS 177
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG---------EIFKIKLDG 655
P +SPDG+ IVFTSD +TP + G I+ + +G
Sbjct: 178 ALPNGYFKPTWSPDGEWIVFTSDR--------NTPWRGHSDGSGWEHTQELSIYAARPNG 229
Query: 656 SDLKRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNE 689
+D + ++ S + G+P + P R V E + +
Sbjct: 230 TDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTED 264
>gi|317047357|ref|YP_004115005.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea sp. At-9b]
gi|316948974|gb|ADU68449.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp.
At-9b]
Length = 431
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPEPLMSPTWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G+ ++Y I NG +++
Sbjct: 277 GSGQ---IRQITDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKIGINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + + DGKS+V S GG + K L+ ++ LT
Sbjct: 330 WEGAQNQDAD--VAADGKSMVMISSAGGAQ--------------HVAKQDLETGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|421598441|ref|ZP_16041865.1| translocation protein TolB [Bradyrhizobium sp. CCGE-LA001]
gi|404269447|gb|EJZ33703.1| translocation protein TolB [Bradyrhizobium sp. CCGE-LA001]
Length = 453
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 217 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 273
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 274 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGARICFESDRGGRSQI 326
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG+ + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 327 YVMAAGGGQAQRISFSKDDTNASYSTPV--WSPKGDYIAFTRQ----GGGQFAIGVMKPD 380
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
G+G R L ++G N P FSP+G+ ++F D GG
Sbjct: 381 GSGERLL----TSGFHNEGPTFSPNGRVLMFFRDPGG 413
>gi|334132555|ref|ZP_08506312.1| Protein TolB precursor [Methyloversatilis universalis FAM5]
gi|333442521|gb|EGK70491.1| Protein TolB precursor [Methyloversatilis universalis FAM5]
Length = 424
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 163/371 (43%), Gaps = 75/371 (20%)
Query: 335 IAVATRRPTSSYRH---IELFDLVKNKFIELTRFV-SPKT-----HHLNPFISPD----- 380
+A+A+ P R+ + L+D+ + + FV +P T H + FI
Sbjct: 95 LALASILPVPGGRYEVRMRLYDIARQNKPDGMIFVFAPATMRETGHRIADFIYEKMTGEK 154
Query: 381 ---SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA 434
S+R+ Y G +D + Q ++S P IS P++SP G R+A
Sbjct: 155 GVFSTRIAYVSKSAGRFELKVDDADGQNPRTALRSTEPIIS--------PAWSPDGSRLA 206
Query: 435 FVEF----PGVYVVN-SDGSNRRQVYFKNAFST-VWDP--VREAVVYTSGGPEFASESSE 486
+V F P +YV + + G+ FK + S W P R A+V T G SS+
Sbjct: 207 YVSFQAKKPIIYVHSLATGAQTVVANFKGSNSAPAWAPDGKRLAIVLTKDG------SSQ 260
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
I +INVD S + R+ ++ + P SPDG++I F S R G +Y + A GG
Sbjct: 261 --IYTINVDG----SGLNRVVSSSAIDTEPQFSPDGQFIYFTSDRGGSPQIYRVPAGGGN 314
Query: 547 GYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
R+T EG ++ T SPDG+ +A+ + G F++ + ++ L S
Sbjct: 315 ---PERVTFEGSYNVT-PRLSPDGKSLAYVTRN----GGRFQIASMDLASRQVQILTDS- 365
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
R P F+P+G+ I++ S+ GG G + + DG ++L+ +
Sbjct: 366 --SRDESPSFAPNGRMIIYASEIGG--------------RGVLSAVSADGRVRQKLSGQA 409
Query: 666 FED-GTPAWGP 675
D PAWGP
Sbjct: 410 GGDVREPAWGP 420
>gi|452841073|gb|EME43010.1| hypothetical protein DOTSEDRAFT_153255 [Dothistroma septosporum
NZE10]
Length = 596
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 135/614 (21%), Positives = 238/614 (38%), Gaps = 108/614 (17%)
Query: 109 LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISM 168
+++ +ERNG N D R + G+++ V P ++ + GV+S
Sbjct: 46 IVFTSERNGPGNA-------DLFR-------IRADGSDLEELVATPFVE----DQGVLSP 87
Query: 169 KDKPILSGEYLIYVSTHENPGTPRTS--WAAVYSTELKTGLTRRLTPYGV-----ADFSP 221
+ L YVST G + W T+ KT LT GV F P
Sbjct: 88 DNSK------LAYVSTSAAEGQDWKANIWVMDLKTKSKTCLTNTEEVKGVPWSPDGYFKP 141
Query: 222 AVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGGWPCWVD 276
SP G + +S N W DG + ++ I+ R DG+ +I+ G+
Sbjct: 142 QWSPDGDWIIFSSDRNTAWTNHGDGTGWEHTQELSIYAIRPDGSDFRRIITMPGY----- 196
Query: 277 ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIA 336
+L + S++ IS Y + L QT V + Q V +++ AT +
Sbjct: 197 --SLGSPKWSKDGKRISFYHLELEQTYNVRNAPLWSQTVNQ--IYSVDFATGQDIKQETN 252
Query: 337 VATRRPTSSYRHIELFDLVKNK------FIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
T + + + + +VK + T + + NP S D +++
Sbjct: 253 SNTLKVAPQFVNDTIAYVVKGGDSPVGIYYNTTHLSTSRGGEENPCWSSDGTKI------ 306
Query: 391 GGSTREDGNNQLLLENIKSPLPDISL----------FRFDGSFPSFSPKGDRIAFVE-FP 439
+ N+ P + +R FP+ S +G + +
Sbjct: 307 -----------IFETNVPRPFWQLGSSVYSWDQDWDYRIGEQFPALSKQGKLASPNDRHD 355
Query: 440 GVYVVNSDGSNRRQVYFKNAFSTV-------------WDPVREAVVYTSGGPEFASESSE 486
G+ + + ++ ++ + W P E + ++ GG F + S+
Sbjct: 356 GITIQYPNNTDSYDIFNSQTVANATQYDGPLLVLQPAWSPDGEWLAFSLGGCGFLQDRSK 415
Query: 487 VD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I I D S RLT N+ +PS + DG +V+R Y L I+D +
Sbjct: 416 YTSWIYRIRADG----SHYERLTDGTVNSGYPSYAADGNSLVYRVWGAEY-GLRILDLKT 470
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
+ LT +D ++SPDGE I F + ++++ I P+G+ L+ L +
Sbjct: 471 ---HKTRVLTTDTLNDNTPSFSPDGEKIVFTRRMN---ESNYDICTIRPDGSDLQVL--T 522
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
SA H ++ DG+ I ++S G + E + QPYG+I+ + DG + ++LT +
Sbjct: 523 TSAANDGHATWTADGR-IHWSSGQNGWTNEAAAYWTAEQPYGKIWIMDADGGNKRQLTDS 581
Query: 665 SFEDGTPAWGPRFI 678
+ED P + P I
Sbjct: 582 IWEDAMPIYFPNEI 595
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 43/256 (16%)
Query: 440 GVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTS--GGPEFASESSEVDIISINV 494
V+++NSDGSN + ++ + + P + +V+TS GP D+ I
Sbjct: 12 AVWMINSDGSNPHSLLGDSSHLEYHASFSPDGQFIVFTSERNGP------GNADLFRIRA 65
Query: 495 D--DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-----YKNLYIMDAEGGEG 547
D D++ + A + G +SPD + + ST N+++MD +
Sbjct: 66 DGSDLEELVATPFVEDQG------VLSPDNSKLAYVSTSAAEGQDWKANIWVMDLKTKSK 119
Query: 548 YGLHRLTEG---PWSDT---MCNWSPDGEWIAFASDRD----NPGSGS-------FEMYL 590
L E PWS WSPDG+WI F+SDR+ N G G+ +Y
Sbjct: 120 TCLTNTEEVKGVPWSPDGYFKPQWSPDGDWIIFSSDRNTAWTNHGDGTGWEHTQELSIYA 179
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
I P+G+ R++I + P +S DGK I F + + P Q +I+
Sbjct: 180 IRPDGSDFRRIITMPGYSLGS-PKWSKDGKRISFYHLELEQTYNVRNAPLWSQTVNQIYS 238
Query: 651 IKL-DGSDLKRLTQNS 665
+ G D+K+ T ++
Sbjct: 239 VDFATGQDIKQETNSN 254
>gi|300692237|ref|YP_003753232.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum PSI07]
gi|299079297|emb|CBJ51969.2| protein tolB, component of the tol-pal system [Ralstonia
solanacearum PSI07]
Length = 433
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 113/263 (42%), Gaps = 47/263 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDP--VREAVVYTS 475
PS+SP G ++A+V F P VYV + R + + N + W P R AV +
Sbjct: 204 PSWSPDGTKVAYVSFESRKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVALSR 263
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I +N D S +RRLT + + PS SPDG+ I F S R G
Sbjct: 264 DG--------NTQIYLVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAP 311
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIH 592
+Y M EG + R+T +T SPDG+ +A+ S G+F++Y L +
Sbjct: 312 QIYRMPVEGEDAGSAQRVTFKGSYNTSPRMSPDGKLLAYISRV----GGAFKLYVQDLSN 367
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+ TGL S P F+ +GK I++ + GG S + +
Sbjct: 368 GDVTGLTDTAYDES------PSFAANGKFILYATRVGGRSV--------------LAAVS 407
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ + E PAWGP
Sbjct: 408 TDGRTRQILSLQAGEVREPAWGP 430
>gi|241662341|ref|YP_002980701.1| translocation protein TolB [Ralstonia pickettii 12D]
gi|240864368|gb|ACS62029.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia
pickettii 12D]
Length = 434
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 37/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VYV + R + + N + W P V +
Sbjct: 205 PSWSPDGTKVAYVSFESKKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVS--- 261
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S +RRL+ + + PS SPDG++I F S R G +
Sbjct: 262 ---LSRDGNTQVYLVNADG----SGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQI 314
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M +G E R+T +T SPDG+ +A+ S G+F +Y +
Sbjct: 315 YRMSVDGEEAGAAQRVTFKGNYNTSPRVSPDGKLLAYISRV----GGAFRLYTQDLSNGD 370
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG S + + DG
Sbjct: 371 VNALTDTSN---DESPSFAANGKFILYATRVGGKSV--------------LAAVSTDGRT 413
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ + E PAWGP
Sbjct: 414 RQVLSLQAGEVREPAWGP 431
>gi|294637421|ref|ZP_06715712.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella
tarda ATCC 23685]
gi|451966098|ref|ZP_21919353.1| TolB protein [Edwardsiella tarda NBRC 105688]
gi|291089414|gb|EFE21975.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella
tarda ATCC 23685]
gi|451315347|dbj|GAC64715.1| TolB protein [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A+R++ + ++N P+ SPDG + F ++TG NLY+MD G + ++T+G ++T
Sbjct: 235 AIRQVASFPRHNGSPAFSPDGTKLAFALSKTGSLNLYVMDLASG---AIRQVTDGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+W PD + +AF SD+ +G ++Y I+ NG ++L G+ + SPDGK
Sbjct: 292 EPSWFPDSQNLAFTSDQ----AGRPQIYKININGGAAQRLTWEGA--QNQDAEVSPDGKF 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S G I K+ L G++ ++ ++F D TP+ P
Sbjct: 346 LVMVSSNAGAQ--------------HIAKLDL-GTNATQVLTDTFLDETPSIAP 384
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 35/253 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLF-RFDGSFPSFSPKG 430
++P S D S++ Y T E G + L+++ + + + ++ F R +GS P+FSP G
Sbjct: 203 MSPAWSSDGSKLAY------VTFESGRSALVIQTLSNGAIRQVASFPRHNGS-PAFSPDG 255
Query: 431 DRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASES 484
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 256 TKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPSWFPDSQNLAFTS------DQA 309
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I IN++ A +RLT G N VSPDGK++V S+ G +++ +D
Sbjct: 310 GRPQIYKINING----GAAQRLTWEGAQNQDAEVSPDGKFLVMVSSNAGAQHIAKLDL-- 363
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G ++ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 364 --GTNATQVLTDTFLDETPSIAPNGTMVIYSSTQ---GLGSV-LQLVSIDGRFKARL--P 415
Query: 605 GSAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 416 ATDGQVKFPAWSP 428
>gi|71892116|ref|YP_277848.1| translocation protein TolB [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|119371035|sp|Q492W9.1|TOLB_BLOPB RecName: Full=Protein TolB; Flags: Precursor
gi|71796222|gb|AAZ40973.1| TolB [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 453
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +P +Y+ + DG N+ + S W P + + Y + FAS
Sbjct: 184 RIAYVLRIHNDHYPYELYISDYDGHNQISICRSTEPLMSPAWSPDGKKIAYVT----FAS 239
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SE+ I ++N V+ + ++ G N A PS SPD K + F ++TG NLYIMD
Sbjct: 240 GHSELVIQALNTGLVNNI-----VSFPGHNGA-PSFSPDCKKLAFSLSKTGSLNLYIMDL 293
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
E GE + +LT+ ++T +W PD + IA+ SD+ GS ++Y I+ T +++L
Sbjct: 294 ESGE---ITQLTKNRNNNTEPSWFPDNQNIAYTSDQ----GGSPQIYKINVKTTEIQRLS 346
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++ + +P S DG I+ + + G
Sbjct: 347 WLHTSNQ--NPNVSSDGTFIIMVNRHQG 372
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYI D +G + R TE S WSPDG+ IA+ + SG E+ +I T
Sbjct: 200 LYISDYDGHNQISICRSTEPLMSPA---WSPDGKKIAYVTF----ASGHSEL-VIQALNT 251
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFT-SDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL I S G P FSPD K + F+ S G ++ ++ + L+
Sbjct: 252 GLVNNIVSF-PGHNGAPSFSPDCKKLAFSLSKTGSLN---------------LYIMDLES 295
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++ +LT+N + P+W P
Sbjct: 296 GEITQLTKNRNNNTEPSWFP 315
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
++P SPD ++ Y T G+++L+++ + + L + I F PSFSP
Sbjct: 221 MSPAWSPDGKKIAY------VTFASGHSELVIQALNTGLVNNIVSFPGHNGAPSFSPDCK 274
Query: 432 RIAF----VEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++AF +Y+++ + Q+ +T W P + + YTS G P+
Sbjct: 275 KLAFSLSKTGSLNLYIMDLESGEITQLTKNRNNNTEPSWFPDNQNIAYTSDQGGSPQ--- 331
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I INV + ++RL+ +N P+VS DG +I+ + G +N+ ++
Sbjct: 332 ------IYKINVKTTE----IQRLSWLHTSNQNPNVSSDGTFIIMVNRHQGKQNIAKLNL 381
Query: 543 EGGE 546
G+
Sbjct: 382 LTGQ 385
>gi|371910572|dbj|BAL44387.1| serine/threonine protein kinase [uncultured bacterium]
gi|374853683|dbj|BAL56585.1| serine/threonine protein kinase [uncultured Chloroflexi bacterium]
Length = 715
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 120/293 (40%), Gaps = 55/293 (18%)
Query: 411 LPDISLFRFDGS-------------FPSFSPKGDRIAFV--------EFPG--VYVVNSD 447
LP I + FDGS P F+P G R+ F+ ++PG +Y++N+D
Sbjct: 446 LPQIFIMNFDGSDVRQLTNLPEGACQPEFAPDGTRLVFISPCKAPQEKYPGAALYMMNAD 505
Query: 448 GSNRRQVYFKNA----FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503
GS + N F W P + +TS S++ I+ + + V ++ +
Sbjct: 506 GSG--LMVLTNVPGGDFDPAWSPSGRKIAFTS----LRQGKSDLYILDLGDNSVTPLNVL 559
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTM 562
R T P+ SPDGKW+ F R G ++ ++ E GE L R GP + D
Sbjct: 560 ERGDTEASQ---PTWSPDGKWLAFTRQRFGSYQIWKINLETGEKEQLTR--SGPDYKDFS 614
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPDG ++ F+ + + P + SG+ AN SP + I
Sbjct: 615 PVWSPDGMYLLFS-----------QRLIGQPIVRARLIPLDSGTLSYANFGIISPV-EGI 662
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F++D + E + +I++ G L RLT D PAW P
Sbjct: 663 SFSADGFWVVFESVDEKGNR----DIYRALATGGGLVRLTSEPGSDFDPAWRP 711
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 432 RIAFV-----EFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASES 484
+IAF + P ++++N DGS+ RQ+ + A + P +V+ S +
Sbjct: 435 QIAFASMRLQDLPQIFIMNFDGSDVRQLTNLPEGACQPEFAPDGTRLVFISPCKAPQEKY 494
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ +N D S + LT + P+ SP G+ I F S R G +LYI+D
Sbjct: 495 PGAALYMMNADG----SGLMVLTNVPGGDFDPAWSPSGRKIAFTSLRQGKSDLYILDLGD 550
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
L+ L G + WSPDG+W+AF R GS++++ I+ +L +S
Sbjct: 551 NSVTPLNVLERGDTEASQPTWSPDGKWLAFTRQR----FGSYQIWKINLETGEKEQLTRS 606
Query: 605 GSAGRANHPYFSPDGKSIVFT 625
G + P +SPDG ++F+
Sbjct: 607 GPDYKDFSPVWSPDGMYLLFS 627
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 572 IAFASDR--DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
IAFAS R D P ++++++ +G+ +R+L A P F+PDG +VF S
Sbjct: 436 IAFASMRLQDLP-----QIFIMNFDGSDVRQLTNLPEG--ACQPEFAPDGTRLVFIS--- 485
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P P + P ++ + DGS L LT D PAW P
Sbjct: 486 -----PCKAPQEKYPGAALYMMNADGSGLMVLTNVPGGDFDPAWSP 526
>gi|300715889|ref|YP_003740692.1| protein TolB (translocation of group A colicins) [Erwinia
billingiae Eb661]
gi|299061725|emb|CAX58841.1| Protein TolB (Translocation of group A colicins) [Erwinia
billingiae Eb661]
Length = 430
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A++++ + ++N P+ SPDG + F ++TG NLY+MD G+ +++LT+G ++ T
Sbjct: 235 AIKQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ---INQLTDGRYNST 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +A+ SD+ +G ++Y I +G ++L G G+ S DGKS
Sbjct: 292 EPTWFPDSQSLAYTSDQ----AGRPQIYKISASGGTAQRLTWEG--GQNQDADVSSDGKS 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S GG + + L+ +++LT ++F D TP+ P
Sbjct: 346 LVMISTNGGAQ--------------HVARQDLETGAVQQLT-DTFLDETPSLAP 384
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P S D S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSKDGSKLAY------VTFESGKSALVVQTLANGAIKQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ Q+ ST W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQINQLTDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I+ +RLT G N VS DGK +V ST G +++ D E G
Sbjct: 311 RPQIYKISASG----GTAQRLTWEGGQNQDADVSSDGKSLVMISTNGGAQHVARQDLETG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQQLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|187927780|ref|YP_001898267.1| translocation protein TolB [Ralstonia pickettii 12J]
gi|187724670|gb|ACD25835.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia
pickettii 12J]
Length = 434
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 37/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VYV + R + + N + W P V +
Sbjct: 205 PAWSPDGTKVAYVSFESKKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVS--- 261
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + +N D S +RRL+ + + PS SPDG+ I F S R G +
Sbjct: 262 ---LSRDGNTQVYLVNADG----SGLRRLSRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI 314
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M +G E G R+T +T SPDG+ +A+ S G+F +Y +
Sbjct: 315 YRMSVDGEEAGGAQRVTFKGNYNTSPRVSPDGKLLAYISRV----GGAFRLYTQDLSNGD 370
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG S + + DG
Sbjct: 371 VNALTDTSN---DESPSFAANGKFILYATRVGGKSV--------------LAAVSTDGRT 413
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ + E PAWGP
Sbjct: 414 RQVLSLQAGEVREPAWGP 431
>gi|386398096|ref|ZP_10082874.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM1253]
gi|385738722|gb|EIG58918.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM1253]
Length = 448
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 41/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 213 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 269
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 270 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGARICFESDRGGRSQI 322
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
Y+M A GG + ++ + T WSP G++IAF G G F + ++ P+G
Sbjct: 323 YVMAAGGGAAQRIS-FSKDDNNATYSTPVWSPRGDYIAFTRQ----GGGQFSIGVMKPDG 377
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L ++G N P FSP+G+ ++F D GG S P +F + +
Sbjct: 378 SGERLL----TSGYHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLFSVDIS 421
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 422 GRNELKVPTPGFAS-DPAWSP 441
>gi|300704850|ref|YP_003746453.1| protein tolb, component of the tol-pal system [Ralstonia
solanacearum CFBP2957]
gi|299072514|emb|CBJ43864.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum CFBP2957]
Length = 434
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 129/306 (42%), Gaps = 60/306 (19%)
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
S+VG H S + N Q+ L S P IS PS+SP G ++A+V F
Sbjct: 174 SKVGRHYQLQISDSDGANPQIAL---TSSEPIIS--------PSWSPDGTKVAYVSFESR 222
Query: 439 -PGVYVVNSDGSNRRQVYFK---NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISI 492
P VYV + + RR V N + W P R AV + G I +
Sbjct: 223 KPVVYV-HDLVTGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDG--------NTQIYLV 273
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
N D S +RRLT + + PS SPDG I F S R G +Y M +G + G R
Sbjct: 274 NADG----SGLRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQIYRMPVDGEDAGGAQR 329
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLRKLIQSGSAGR 609
+T +T SPDG+ +A+ S G+F++Y L + + TGL S
Sbjct: 330 VTFKGGYNTSPRVSPDGKLLAYISRV----GGAFKLYVQDLSNGDVTGLTDTSYDES--- 382
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P F+ +GK I++ + GG S + + DG + L+ + +
Sbjct: 383 ---PSFAANGKFILYATRVGGRSV--------------LAAVSTDGRTRQTLSLQAGQVR 425
Query: 670 TPAWGP 675
PAWGP
Sbjct: 426 EPAWGP 431
>gi|390166707|ref|ZP_10218964.1| translocation protein TolB [Sphingobium indicum B90A]
gi|389590423|gb|EIM68414.1| translocation protein TolB [Sphingobium indicum B90A]
Length = 444
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVN-SDGSNR 451
DG N + N +S I+L P FSP I +V + +YV + G R
Sbjct: 200 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLNNRVRIYVYDIGTGKQR 249
Query: 452 RQVYFKNA-FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
NA F+ W P ++++ + + DI ++ G A +RLTT
Sbjct: 250 LVTESSNATFAPRWSPDGRNILFS------MAIAGNTDIYRVS----SGGGAPQRLTTAP 299
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G G R++ G WSP G+
Sbjct: 300 GIDVGGSYSPDGRQIVFESDRSGSQQIYVMNADGS---GQRRISHGGGRYATPEWSPRGD 356
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 357 LIAFTKI-----SGDFKIAVMTPSGDNERILT---NGWQDEQPSWSPNGRVLQFFR---- 404
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + + +++++ L G + +R+ PAWGP
Sbjct: 405 ------TTPGR-EGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 441
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ A P SPD K IV+ S +Y+ D G G
Sbjct: 194 LAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLNNRVRIYVYDI----GTGK 247
Query: 551 HRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL TE + WSPDG I F+ +G+ ++Y + G ++L + + G
Sbjct: 248 QRLVTESSNATFAPRWSPDGRNILFSMAI----AGNTDIYRVSSGGGAPQRL--TTAPGI 301
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG+ IVF SD G +I+ + DGS +R++
Sbjct: 302 DVGGSYSPDGRQIVFESDRSGSQ--------------QIYVMNADGSGQRRISHGGGRYA 347
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 348 TPEWSPR 354
>gi|406707066|ref|YP_006757418.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB59]
gi|406652842|gb|AFS48241.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB59]
Length = 438
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 42/263 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P I ++E+ P VY+ + R V + F+ + P ++VV +
Sbjct: 205 PRFAPNNQTITYMEYKNNLPRVYIYDLKTGEREIVGDFPGMTFAPRFSPDSKSVVMSFSD 264
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+++ +I S++++ ++ RLT + + PS SPDG+ IVF S R+G L
Sbjct: 265 ----SKTANSEIYSMDLN----TRSITRLTNDSGIDTSPSYSPDGEKIVFNSDRSGSPQL 316
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIMD +G + R+++G WSP G+ IAF +R +F + ++ NG
Sbjct: 317 YIMDKDGS---NIKRISKGKGVYGNPVWSPRGDLIAFVKNR----KPNFYIGVMDTNGDN 369
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF----TSDYGGISAEPISTPHQYQPYGE-IFKIK 652
R ++Q + P +SP+G+ ++F S+ G E Y E I
Sbjct: 370 ERIIVQDFA---LESPAWSPNGRYLIFYRQQKSNLDGTGGETTIHFIDITGYNERIIPTP 426
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DGSD PAW P
Sbjct: 427 RDGSD-------------PAWSP 436
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 462 TVWDPVREAVVYTSGGPE----FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAF 515
TV D V E + +G + + SE +D I + + D DG + T+GKN
Sbjct: 144 TVSDIVYERITGETGYFDTRIVYVSEVGPLDQRIKRLAIMDQDGHLDSHQFLTDGKNLVL 203
Query: 516 -PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
P +P+ + I + + +YI D + GE + + P +SPD + +
Sbjct: 204 TPRFAPNNQTITYMEYKNNLPRVYIYDLKTGE---REIVGDFPGMTFAPRFSPDSKSVVM 260
Query: 575 A-SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
+ SD S E+Y + N + +L + +G P +SPDG+ IVF SD G
Sbjct: 261 SFSDSKTANS---EIYSMDLNTRSITRL--TNDSGIDTSPSYSPDGEKIVFNSDRSG--- 312
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+P +++ + DGS++KR+++ G P W PR
Sbjct: 313 ----SP-------QLYIMDKDGSNIKRISKGKGVYGNPVWSPR 344
>gi|427409563|ref|ZP_18899765.1| tol-Pal system beta propeller repeat protein TolB [Sphingobium
yanoikuyae ATCC 51230]
gi|425711696|gb|EKU74711.1| tol-Pal system beta propeller repeat protein TolB [Sphingobium
yanoikuyae ATCC 51230]
Length = 444
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG N + N +S I+L P FSP I +V + G +YV + +R
Sbjct: 200 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLGSRVRIYVYDIGTGQQR 249
Query: 453 QVYFKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V N F+ W P ++++ + S DI ++ A RLT +
Sbjct: 250 LVTESNNTTFAPRWSPDGRNILFS------MAVSGNTDIYRVSAQG----GAPVRLTNSP 299
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G R++ G WSP G+
Sbjct: 300 GIDVGGSYSPDGRQIVFESDRSGGQQIYVMNADGSN---QRRISHGGGRYATPEWSPRGD 356
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 357 LIAFTKL-----SGDFKIAVMTPSGDNERILT---NGWQDEQPTWSPNGRVLQFFR---- 404
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + Q +++++ L G + +R+ PAWGP
Sbjct: 405 ------TTPGR-QGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 441
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ +ES D + + + D DG A R TNG++ A P SPD K IV+ S
Sbjct: 180 YIAESGPKDNRVKRLAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLGSRVR 237
Query: 537 LYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+ D G G RL TE + WSPDG I F+ SG+ ++Y + G
Sbjct: 238 IYVYDI----GTGQQRLVTESNNTTFAPRWSPDGRNILFSMAV----SGNTDIYRVSAQG 289
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+L + S G +SPDG+ IVF SD G +I+ + DG
Sbjct: 290 GAPVRL--TNSPGIDVGGSYSPDGRQIVFESDRSGGQ--------------QIYVMNADG 333
Query: 656 SDLKRLTQNSFEDGTPAWGPR 676
S+ +R++ TP W PR
Sbjct: 334 SNQRRISHGGGRYATPEWSPR 354
>gi|384215964|ref|YP_005607130.1| translocation protein TolB [Bradyrhizobium japonicum USDA 6]
gi|354954863|dbj|BAL07542.1| translocation protein TolB [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 212 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 268
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 269 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 321
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG+ + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 322 YVMAAGGGQAQRISFSKDDTNATYSTPV--WSPRGDYIAFTRQ----GGGQFSIGVMKPD 375
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
G+G R L ++G N P FSP+G+ ++F D GG
Sbjct: 376 GSGERLL----TSGYHNEGPTFSPNGRVLMFFRDPGG 408
>gi|30248242|ref|NP_840312.1| translocation protein TolB [Nitrosomonas europaea ATCC 19718]
gi|32699691|sp|Q82XN9.1|TOLB_NITEU RecName: Full=Protein TolB; Flags: Precursor
gi|30180127|emb|CAD84129.1| probable tolB-related transport protein [Nitrosomonas europaea ATCC
19718]
Length = 425
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIAFV G + V + DG N R + Y + S W P + YTS F +
Sbjct: 161 RIAFVRKQGSQYALQVSDYDGFNARSLIEYTEPIISPAWSPDGSRIAYTS----FEKKKP 216
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
V + ++ + V+ + G N+A P+ SPDG + T G +Y+++A+G
Sbjct: 217 VVYVQTLATRERKAVANFK-----GSNSA-PAWSPDGSKLAVVLTLHGGSQIYLINADGS 270
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
GL R+++ P DT ++SPDG W+ F SDR GS ++Y + +G ++ G
Sbjct: 271 ---GLQRISQSPGIDTEPSFSPDGRWLMFTSDR----GGSPQIYRMPVSGGVAERMTFEG 323
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGG 630
+ P++SPDGK V+ G
Sbjct: 324 DYNVS--PHYSPDGKRFVYIHRNAG 346
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 89/309 (28%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD SR+ Y ++ E + ++ + + ++ F+ S P++SP G
Sbjct: 195 ISPAWSPDGSRIAY------TSFEKKKPVVYVQTLATRERKAVANFKGSNSAPAWSPDGS 248
Query: 432 RIAFV-EFPG---VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
++A V G +Y++N+DGS +++ S+S +
Sbjct: 249 KLAVVLTLHGGSQIYLINADGSGLQRI---------------------------SQSPGI 281
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D PS SPDG+W++F S R G +Y M GG
Sbjct: 282 D-------------------------TEPSFSPDGRWLMFTSDRGGSPQIYRMPVSGGVA 316
Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
R+T EG + + ++SPDG+ + + +G F + + + ++ L S
Sbjct: 317 ---ERMTFEGDY-NVSPHYSPDGKRFVYI----HRNAGRFNVAIQDLSTRQMQLLTDSNF 368
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
P FSP+ + I++T++ GG G + + DG RL+Q +
Sbjct: 369 ---DESPSFSPNNRMILYTTEIGG--------------RGILSTVSSDGQAKSRLSQEAG 411
Query: 667 EDGTPAWGP 675
WGP
Sbjct: 412 NIREAVWGP 420
>gi|296447816|ref|ZP_06889729.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus
trichosporium OB3b]
gi|296254675|gb|EFH01789.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus
trichosporium OB3b]
Length = 438
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P V +++ + R V + F+ + P + +V +
Sbjct: 211 PRFSPSSQDVTYMSFGAGDPKVLLLSIESGQREVVGNFPGMTFAPRFSPDGQKIVMS--- 267
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ + ++ ++++ RLT + PS SP G IVF S R G + +
Sbjct: 268 ---LSQGASTNLYAMDLRS----RTTTRLTDTNAIDTSPSYSPSGAEIVFESDRGGSQQI 320
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ GP + WSP G++IAF SG+F + ++ P+G+G
Sbjct: 321 YVMSANGG---GARRISFGPGHYSTPVWSPKGDYIAFTRQ----SSGAFGIGVMKPDGSG 373
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G ++F + GG S I H +G S
Sbjct: 374 ERILTE----GFHNEGPTWAPNGLFLMFFREPGGQSGAKI---HMVDVFGR--------S 418
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ T + D P+WGP
Sbjct: 419 EFPVPTPSYASD--PSWGP 435
>gi|374577676|ref|ZP_09650772.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM471]
gi|374425997|gb|EHR05530.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM471]
Length = 448
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 41/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 213 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 269
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 270 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 322
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
Y+M A GG + ++ + T WSP G++IAF G G F + ++ P+G
Sbjct: 323 YVMAAGGGAAQRIS-FSKDDNNATYSTPVWSPRGDYIAFTRQ----GGGQFSIGVMKPDG 377
Query: 596 TGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+G R L ++G N P FSP+G+ ++F D GG S P +F + +
Sbjct: 378 SGERLL----TSGYHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLFSVDIS 421
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 422 GRNELKVPTPGFAS-DPAWSP 441
>gi|350631818|gb|EHA20188.1| hypothetical protein ASPNIDRAFT_130645 [Aspergillus niger ATCC
1015]
Length = 639
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 91/211 (43%), Gaps = 35/211 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
+Y+ DGSN + + N+ F W P + V +TS + DI + ++
Sbjct: 20 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAINGT 75
Query: 498 DGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGEGYGLHRLTE 555
V A V + + + S+SPDGK + F ++R + +M E G L LT
Sbjct: 76 STVGAEVEPVALSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGS---LKNLTL 132
Query: 556 GPWSDTMCN-----------WSPDGEWIAFASDRDNP------GSG-----SFEMYLIHP 593
P N WSPDGEWI F SDR+ P GSG +Y P
Sbjct: 133 IPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARP 192
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
NGT R L+ S S P FSP+GK +VF
Sbjct: 193 NGTDFR-LVSSRSNYTQGSPRFSPNGKRLVF 222
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A+ W P + + G +SS I S+ + G N N FPS
Sbjct: 425 AYQGSWGPNDTNITFGYGAYFVGRQSSPGFIFSVTPE---GTGVTLLAGNNITNYGFPSY 481
Query: 519 SPDGKWIVFRS--------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ DG +VFR+ T G L I+D + + +LT W D + +SPDG+
Sbjct: 482 NYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQ---VTQLTT-EW-DNLPAFSPDGK 536
Query: 571 WIAFA--SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
I F ++ DN G +++++ ++P+G+ L KL S ++ H ++ +G+ + T+ +
Sbjct: 537 KILFTRRTNLDNIGD-NYDIFTMNPDGSELTKLTPSIASDA--HAVWTQNGRILYSTAMF 593
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G P+ QPY I ++ DGS+ L+ + +ED P + P
Sbjct: 594 GFQQEAPLYD-DSMQPYAIIMLMEADGSNKTALSNSLWEDAMPMFAP 639
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYG-- 549
+ + DG +A L +N + S SPD K + F S R G ++Y + G G
Sbjct: 22 IAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAE 81
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---------GSFEMYLIHPNGTGLRK 600
+ + P D + SPDG+ +AFA+ R N S GS + + P G+ +
Sbjct: 82 VEPVALSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIP---GISE 138
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG---------EIFKI 651
S P +SPDG+ IVFTSD +TP + G I+
Sbjct: 139 AANSALPNGYFKPTWSPDGEWIVFTSDR--------NTPWRGHSDGSGWEHTQELSIYAA 190
Query: 652 KLDGSDLKRLTQNS-FEDGTPAWGPRFIRPVDVEEVKNE 689
+ +G+D + ++ S + G+P + P R V E + +
Sbjct: 191 RPNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTED 229
>gi|392408490|ref|YP_006445097.1| tol-pal system beta propeller repeat protein TolB [Desulfomonile
tiedjei DSM 6799]
gi|390621626|gb|AFM22833.1| tol-pal system beta propeller repeat protein TolB [Desulfomonile
tiedjei DSM 6799]
Length = 427
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 32/216 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P +SP G I F + P V+ V+ G R + + P A S
Sbjct: 203 PDWSPDGRSIIFTSYIRGNPDVWAVDFPGLGLRPLSSR--------PGLNASPRHSPDGN 254
Query: 480 FASESSEVD----IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGY 534
+ + S+ V+ II IN + ++ TNG+ N P+ SPDG + + S + G
Sbjct: 255 YVALSANVNNLPKIIVINAQ-----GNMLKVLTNGRGNDISPAWSPDGAAMAYVSDQAGT 309
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y+M ++GG+ RLT +T +WSP G+ IAF + + G F++ + P+
Sbjct: 310 PQIYVMSSQGGQP---KRLTFNSNYNTDPDWSPRGDLIAFTARVE----GRFQICTMKPD 362
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GT LR L SAG P +SPDG+ I F S+ G
Sbjct: 363 GTDLRVLT---SAGSNQDPAWSPDGRFIAFVSNRDG 395
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG + LT N P SPDG+ I+F S G +++ +D G GL L
Sbjct: 182 VMDFDG-HNLTPLTRTNSINLSPDWSPDGRSIIFTSYIRGNPDVWAVDF---PGLGLRPL 237
Query: 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-- 611
+ P + SPDG ++A +++ +N ++ +I+ G L+ L + GR N
Sbjct: 238 SSRPGLNASPRHSPDGNYVALSANVNNLP----KIIVINAQGNMLKVL----TNGRGNDI 289
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG ++ + SD G TP +I+ + G KRLT NS + P
Sbjct: 290 SPAWSPDGAAMAYVSDQAG-------TP-------QIYVMSSQGGQPKRLTFNSNYNTDP 335
Query: 672 AWGPR 676
W PR
Sbjct: 336 DWSPR 340
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 33/187 (17%)
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF------------- 423
+ P SSR G + S DGN L N+ + LP I + G+
Sbjct: 234 LRPLSSRPGLNASPRHS--PDGNYVALSANVNN-LPKIIVINAQGNMLKVLTNGRGNDIS 290
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
P++SP G +A+V P +YV++S G +++ F + ++T W P + + +T
Sbjct: 291 PAWSPDGAAMAYVSDQAGTPQIYVMSSQGGQPKRLTFNSNYNTDPDWSPRGDLIAFT--- 347
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
A I ++ D D +R LT+ G N P+ SPDG++I F S R G + +
Sbjct: 348 ---ARVEGRFQICTMKPDGTD----LRVLTSAGSNQD-PAWSPDGRFIAFVSNRDGRRLI 399
Query: 538 YIMDAEG 544
YIMD+ G
Sbjct: 400 YIMDSRG 406
>gi|110635500|ref|YP_675708.1| translocation protein TolB [Chelativorans sp. BNC1]
gi|118574584|sp|Q11DI2.1|TOLB_MESSB RecName: Full=Protein TolB; Flags: Precursor
gi|110286484|gb|ABG64543.1| TolB-like protein [Chelativorans sp. BNC1]
Length = 439
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
PSFSP+ I +V F P VY++ + R V + +F++ ++PV + ++ +
Sbjct: 210 PSFSPQRQEITYVSFEGGQPQVYLLQIETGQRELVGNNFPTMSFASRFNPVGDKIIMSLL 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ S +D+ + RLT + PS SPDG +VF S R G
Sbjct: 270 RTDGNSNIYTMDLKT---------RTTARLTDTNAIDTSPSYSPDGNKVVFTSDRGGRAQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+G R++ G + + WSP G+ IAF G F++ ++ +G+
Sbjct: 321 IYVMNADGSNP---QRISFGDGTYSEPVWSPRGDLIAFTKQ----SGGQFQIGIMRTDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L + + P +SP+G+ I+F G +A P +++ I L G
Sbjct: 374 GERIL---STGFQIEGPTWSPNGRVIMFFRQDAG-AAGP-----------KLYSIDLTGR 418
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 419 NEQLIPTPNFAS-DPAWSP 436
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
S S E + + + D DG A R T+G++ PS SP + I + S G +Y++
Sbjct: 177 SGSKENRVKRLAIMDQDG--ANYRALTDGRSIVLKPSFSPQRQEITYVSFEGGQPQVYLL 234
Query: 541 DAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
E G+ R G TM ++P G+ I + R + S + M L
Sbjct: 235 QIETGQ-----RELVGNNFPTMSFASRFNPVGDKIIMSLLRTDGNSNIYTMDLKTRTTAR 289
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L + + P +SPDG +VFTSD GG +I+ + DGS+
Sbjct: 290 L-----TDTNAIDTSPSYSPDGNKVVFTSDRGG--------------RAQIYVMNADGSN 330
Query: 658 LKRLTQNSFEDGT---PAWGPR 676
+R+ SF DGT P W PR
Sbjct: 331 PQRI---SFGDGTYSEPVWSPR 349
>gi|345868005|ref|ZP_08820001.1| WD40-like Beta Propeller Repeat family protein [Bizionia
argentinensis JUB59]
gi|344047487|gb|EGV43115.1| WD40-like Beta Propeller Repeat family protein [Bizionia
argentinensis JUB59]
Length = 376
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 32/198 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I V D+DG + +LT +A P+VSP G IVF S R+G LY M+ +G +
Sbjct: 165 IFVADLDG-NITAQLTNEVGYDAEPTVSPQGDKIVFTSDRSGDLELYTMNLDGT---NVK 220
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------------GSFEMYLIHPNG 595
++T D +SPDG + F S R N + + E+Y+ + +G
Sbjct: 221 QITFELGYDGGAFFSPDGTKLVFRSSRPNTEAEIKEYKNLLAEGLVQPTNMELYICNADG 280
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ LR+L G+A + P+F P G+ I+F+S++ P + ++ I +DG
Sbjct: 281 SDLRQLTDLGNANWS--PFFHPSGEKILFSSNHESERGFPFN----------LYMIDIDG 328
Query: 656 SDLKRLTQNSFEDGTPAW 673
S+L+R+T + D P +
Sbjct: 329 SNLERITHSETFDAFPVF 346
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGG 477
P+ SP+GD+I F +Y +N DG+N +Q+ F+ + + P +V+ S
Sbjct: 188 PTVSPQGDKIVFTSDRSGDLELYTMNLDGTNVKQITFELGYDGGAFFSPDGTKLVFRSSR 247
Query: 478 PEFASESSEVDII-----------SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
P +E E + + + + DG S +R+LT G N P P G+ I+
Sbjct: 248 PNTEAEIKEYKNLLAEGLVQPTNMELYICNADG-SDLRQLTDLGNANWSPFFHPSGEKIL 306
Query: 527 FRSTRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
F S + NLY++D +G L R+T D +S DG+ + F+S+R+N G
Sbjct: 307 FSSNHESERGFPFNLYMIDIDGS---NLERITHSETFDAFPVFSNDGKKLIFSSNRNNNG 363
Query: 583 SGSFEMYL 590
+++
Sbjct: 364 GRDTNLFI 371
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 37/209 (17%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
++V + DG+ Q+ + + P + +V+TS S ++++ ++N+D +
Sbjct: 165 IFVADLDGNITAQLTNEVGYDAEPTVSPQGDKIVFTS------DRSGDLELYTMNLDGTN 218
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-------YKNL-------------Y 538
V+++T + SPDG +VFRS+R YKNL Y
Sbjct: 219 ----VKQITFELGYDGGAFFSPDGTKLVFRSSRPNTEAEIKEYKNLLAEGLVQPTNMELY 274
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
I +A+G + L L WS + P GE I F+S+ ++ F +Y+I +G+ L
Sbjct: 275 ICNADGSDLRQLTDLGNANWSPF---FHPSGEKILFSSNHESERGFPFNLYMIDIDGSNL 331
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
++ S + P FS DGK ++F+S+
Sbjct: 332 ERITHSETFDA--FPVFSNDGKKLIFSSN 358
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 26/123 (21%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL-IQSGSAGRANHPYFSPDGKSIVF 624
SP G+ I F SDR SG E+Y ++ +GT ++++ + G G A +FSPDG +VF
Sbjct: 191 SPQGDKIVFTSDR----SGDLELYTMNLDGTNVKQITFELGYDGGA---FFSPDGTKLVF 243
Query: 625 TS----------DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
S +Y + AE + P E++ DGSDL++LT + G W
Sbjct: 244 RSSRPNTEAEIKEYKNLLAEGLVQPTNM----ELYICNADGSDLRQLT----DLGNANWS 295
Query: 675 PRF 677
P F
Sbjct: 296 PFF 298
>gi|374850946|dbj|BAL53921.1| hypothetical protein HGMM_F11C09C29 [uncultured prokaryote]
Length = 628
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 24/190 (12%)
Query: 422 SFPSFSPKGDRIAFV------EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475
S P++SP G R+A+ E+ +Y++N+DGS + K + W P +++ YT
Sbjct: 442 SHPTWSPDGTRLAYAAPDDQGEWT-IYIINADGSGPPRAVGKGRWP-AWSP-SQSLAYTG 498
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
S I + + D AVR T N+ + SPDG +I + S +G
Sbjct: 499 -----CDRSGRFCGIFSDSNPDDPAPAVR--LTADINDIGLAWSPDGMYIAYMSNHSGNW 551
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y ++ GG + LT P +D + W+PDG +AF SDRD G++ +YL+ P+G
Sbjct: 552 EVYTVNIWGG----VTLLTHDPANDGLPAWAPDGSALAFISDRD----GAWGIYLMQPDG 603
Query: 596 TGLRKLIQSG 605
+ RKL+ G
Sbjct: 604 SQQRKLLDLG 613
>gi|261341330|ref|ZP_05969188.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter
cancerogenus ATCC 35316]
gi|288316635|gb|EFC55573.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter
cancerogenus ATCC 35316]
Length = 431
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQITDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 330 WEGS--QNQDADISADGKTMVMVSTAGG 355
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQITDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N +S DGK +V ST G +++ D G
Sbjct: 312 RPQVYKVNING----GAAQRITWEGSQNQDADISADGKTMVMVSTAGGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|373459021|ref|ZP_09550788.1| surface antigen (D15) [Caldithrix abyssi DSM 13497]
gi|371720685|gb|EHO42456.1| surface antigen (D15) [Caldithrix abyssi DSM 13497]
Length = 941
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 516 PSVSPDGKWIVFRS-TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
P+ SPDGK IVF + +G K+LY+ + EG + L +LT+ ++D +WSPDG +IAF
Sbjct: 405 PTWSPDGKKIVFSGLSFSGQKDLYLFEPEGQK---LWQLTDDFYNDEDPSWSPDGRFIAF 461
Query: 575 ASDRDNPG-SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG--- 630
+SDR G G+ ++L++ LR L R P FS DG+ + FTSD G
Sbjct: 462 SSDRTPYGQQGAANIFLLNIENGELRYLTFGAQEDRG--PAFSADGRFLAFTSDRKGSYN 519
Query: 631 --ISAEPISTPHQYQPYGEIFKI 651
+ PI + QP + FK+
Sbjct: 520 IYVLKNPIESAFSNQP-AQFFKM 541
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG+ I F+ SG ++YL P G L +L + P +SPDG+ I F
Sbjct: 407 WSPDGKKIVFSG---LSFSGQKDLYLFEPEGQKLWQL--TDDFYNDEDPSWSPDGRFIAF 461
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+SD TP+ Q IF + ++ +L+ LT + ED PA+
Sbjct: 462 SSD---------RTPYGQQGAANIFLLNIENGELRYLTFGAQEDRGPAF 501
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 424 PSFSPKGDRIAF--VEFPG---VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSG 476
P++SP G +I F + F G +Y+ +G Q+ F N W P + ++S
Sbjct: 405 PTWSPDGKKIVFSGLSFSGQKDLYLFEPEGQKLWQLTDDFYNDEDPSWSPDGRFIAFSSD 464
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + + +I +N+++ +R LT + + P+ S DG+++ F S R G N
Sbjct: 465 RTPYGQQGA-ANIFLLNIEN----GELRYLTFGAQEDRGPAFSADGRFLAFTSDRKGSYN 519
Query: 537 LYIM 540
+Y++
Sbjct: 520 IYVL 523
>gi|312198255|ref|YP_004018316.1| serine/threonine protein kinase [Frankia sp. EuI1c]
gi|311229591|gb|ADP82446.1| serine/threonine protein kinase [Frankia sp. EuI1c]
Length = 698
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 109/250 (43%), Gaps = 52/250 (20%)
Query: 421 GSFPSFSPKGDRIAFVEFPG-VYVVNSDGSNRRQVYFKNAFST---VWDPVREAVVY--T 474
G PS + G R+A+ G + V DG++ RQ+ S W P + Y
Sbjct: 478 GDAPSVAADG-RVAYAGVGGQIVTVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAYFRN 536
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
+GG + + DG A R + +G A+ SPDG+ IVFR +
Sbjct: 537 TGG--------------LYLMQADGTGARRVASVHGLETAW---SPDGREIVFRDPDS-- 577
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLI 591
+ L I+ G + LT P + +WSPDG+ I F SD +Y I
Sbjct: 578 QTLKIVSMADGS---VRALTGAPHDGAIPVEPSWSPDGKTIVFGSDDGG-------IYAI 627
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
P+GTGL +L +GS HP +SPDG+ +VF D S + G + +
Sbjct: 628 APDGTGLHQLAAAGS----WHPTWSPDGR-VVFVRD--------TSARTFFSTTGRVESM 674
Query: 652 KLDGSDLKRL 661
KLDGSD++ +
Sbjct: 675 KLDGSDVRSV 684
>gi|296123962|ref|YP_003631740.1| hypothetical protein Plim_3729 [Planctomyces limnophilus DSM 3776]
gi|296016302|gb|ADG69541.1| WD40 domain protein beta Propeller [Planctomyces limnophilus DSM
3776]
Length = 354
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 13/145 (8%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+D+ +IN D + ++RLT +A S S DGK IVF S R G +LY+M+A+G
Sbjct: 149 HMDLYTINFDG----TGMQRLTDTPGYDAEGSYSADGKQIVFTSNRDGDADLYLMNADGS 204
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT P D +SPDG+W+ F SDR+ ++Y I +G +L +
Sbjct: 205 N---IRQLTNTPGYDGGPFFSPDGQWVIFRSDREK--EHMLQLYAISVDGKHEVQLTK-- 257
Query: 606 SAGRANH-PYFSPDGKSIVFT-SDY 628
+ N PYF PDGKS++++ +DY
Sbjct: 258 NLDEVNWCPYFHPDGKSLIWSRADY 282
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 41/181 (22%)
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-- 576
SPDG+WIV+++ GY Y + + + L+ G T ++PD + I FAS
Sbjct: 60 SPDGQWIVYQAYPVGYP-FYQIYVQKLDEKTPRLLSTGRGRTTCAYFTPDQKRILFASAH 118
Query: 577 -----------DRDNPGSGS-----------FEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
RD G ++Y I+ +GTG+++L + + G
Sbjct: 119 TDPAIDLTEKKARDEAAQGGRRRYQWDFDPHMDLYTINFDGTGMQRL--TDTPGYDAEGS 176
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+S DGK IVFTS+ G + +++ + DGS++++LT DG P +
Sbjct: 177 YSADGKQIVFTSNRDGDA--------------DLYLMNADGSNIRQLTNTPGYDGGPFFS 222
Query: 675 P 675
P
Sbjct: 223 P 223
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+GL R EG +SPDG+WI + + P F + +L+ +G
Sbjct: 49 FGLPRAGEG-------YFSPDGQWIVYQA---YPVGYPFYQIYVQKLDEKTPRLLSTGR- 97
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ--------------YQPYGEIFKIKL 653
GR YF+PD K I+F S + + + + + P+ +++ I
Sbjct: 98 GRTTCAYFTPDQKRILFASAHTDPAIDLTEKKARDEAAQGGRRRYQWDFDPHMDLYTINF 157
Query: 654 DGSDLKRLT 662
DG+ ++RLT
Sbjct: 158 DGTGMQRLT 166
>gi|422015131|ref|ZP_16361735.1| translocation protein TolB [Providencia burhodogranariea DSM 19968]
gi|414100051|gb|EKT61679.1| translocation protein TolB [Providencia burhodogranariea DSM 19968]
Length = 430
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P E + Y + F S
Sbjct: 166 RIAYVVTNKGGQYPYELRVSDYDGYNQFTVHRSPEPLMSPTWSPDGERLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLYIMD
Sbjct: 222 GSSALVIQTLSS------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYIMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y I+ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKININGGSPVRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + SPDG +V S GG Q+ I K L +++ LT
Sbjct: 329 WEGSQNQDAD--VSPDGSFLVMVSSGGG---------QQH-----IAKQDLATGNVEYLT 372
Query: 663 QNSFEDGTPAWGP 675
+ +F D TP+ P
Sbjct: 373 K-TFLDETPSIAP 384
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD R+ Y T E G++ L+++ + S + ++ F P+FSP G
Sbjct: 203 MSPTWSPDGERLAY------VTFESGSSALVIQTLSSGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +Y+++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYIMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ G S VR +T G N VSPDG ++V S+ G +++ D G
Sbjct: 311 RPQIYKININ---GGSPVR-VTWEGSQNQDADVSPDGSFLVMVSSGGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 N---VEYLTK-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|394989415|ref|ZP_10382248.1| hypothetical protein SCD_01834 [Sulfuricella denitrificans skB26]
gi|393790915|dbj|GAB71887.1| hypothetical protein SCD_01834 [Sulfuricella denitrificans skB26]
Length = 427
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 118/262 (45%), Gaps = 47/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FK-NAFSTVWDP--VREAVVYT 474
PS+SP G R+A+V F P +YV S S +RQV FK N + W P + A+V T
Sbjct: 198 PSWSPDGTRLAYVSFERKKPIIYV-QSLVSGQRQVLAQFKGNNSAPAWSPDGKQLALVLT 256
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G I IN D S V+R++ + + PS SPDG +I+F S R G
Sbjct: 257 KDGGS--------QIYLINADG----SGVKRVSYSSGIDTEPSFSPDGAFIIFTSDRGGS 304
Query: 535 KNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y M G G RLT EG + + ++SPDG+ F SGS +
Sbjct: 305 PQIYRMSVSGS---GAQRLTFEGNY-NVSPHFSPDGKSFTFIQRV----SGSSFHVALQD 356
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+G +L+ + P F+P+GK +++ ++ GG G + +
Sbjct: 357 VASGQMQLLTDTRMDES--PSFAPNGKMLLYATEIGG--------------RGILAAVSS 400
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG +RL+ + + P WGP
Sbjct: 401 DGRVKQRLSTQAGDVREPEWGP 422
>gi|381203134|ref|ZP_09910242.1| translocation protein TolB [Sphingobium yanoikuyae XLDN2-5]
Length = 444
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG N + N +S I+L P FSP I +V + G +YV + +R
Sbjct: 200 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLGSRVRIYVYDIGTGQQR 249
Query: 453 QVYFKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V N F+ W P ++++ + S DI ++ A RLT +
Sbjct: 250 LVTESNNTTFAPRWSPDGRNILFS------MAVSGNTDIYRVSAQG----GAPVRLTNSP 299
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G R++ G WSP G+
Sbjct: 300 GIDVGGSYSPDGRQIVFESDRSGGQQIYVMNADGSN---QRRISHGGGRYATPEWSPRGD 356
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+AF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 357 LVAFTKL-----SGDFKIAVMTPSGDNERILT---NGWQDEQPTWSPNGRVLQFFR---- 404
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + Q +++++ L G + +R+ PAWGP
Sbjct: 405 ------TTPGR-QGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 441
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ +ES D + + + D DG A R TNG++ A P SPD K IV+ S
Sbjct: 180 YIAESGPKDNRVKRLAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLGSRVR 237
Query: 537 LYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+ D G G RL TE + WSPDG I F+ SG+ ++Y + G
Sbjct: 238 IYVYDI----GTGQQRLVTESNNTTFAPRWSPDGRNILFSMAV----SGNTDIYRVSAQG 289
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+L + S G +SPDG+ IVF SD G +I+ + DG
Sbjct: 290 GAPVRL--TNSPGIDVGGSYSPDGRQIVFESDRSGGQ--------------QIYVMNADG 333
Query: 656 SDLKRLTQNSFEDGTPAWGPR 676
S+ +R++ TP W PR
Sbjct: 334 SNQRRISHGGGRYATPEWSPR 354
>gi|376297503|ref|YP_005168733.1| WD40 domain-containing protein [Desulfovibrio desulfuricans ND132]
gi|323460065|gb|EGB15930.1| WD40 domain-containing protein [Desulfovibrio desulfuricans ND132]
Length = 547
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 37/225 (16%)
Query: 409 SPLPDISLFRFDGSFPSFSPKGDRIAFVEF---PGVYVVNSDGSNRRQVYFKNAFSTVWD 465
+PLP RF + PSF+P G R+AF P + G R++ D
Sbjct: 318 APLPGADDTRFVQTNPSFTPDGTRLAFARADVQPDLVARIVAGDLRKE-----------D 366
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA--VRRLTTNGKNNAFPSVSPDGK 523
P ++ + P + D+ S+ D G A + + NG +N FP SPDG+
Sbjct: 367 PAQDIRTANAKYP------IQFDLWSVPFDGGRGGEARPIEGASNNGLSNVFPKYSPDGR 420
Query: 524 WIVFRSTRTGY-----KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
W+ F TG L I+ AEGGE + L T+ ++ WSP+ W+AFAS
Sbjct: 421 WLAFTQCATGLVLQPDARLAIVPAEGGEAHVLAANTK--LMNSWHTWSPNSRWLAFASKG 478
Query: 579 DNPGSGSFEMYLIHPNGTG-----LRKLIQSGSAGRANHPYFSPD 618
++P + E++L H + G LR S + A P F PD
Sbjct: 479 NSPFT---EIFLTHIDDDGRSSPPLRLFRFSHAELAAMVPEFIPD 520
>gi|440509911|ref|YP_007347347.1| protein tolB [Candidatus Blochmannia chromaiodes str. 640]
gi|440454124|gb|AGC03616.1| protein tolB [Candidatus Blochmannia chromaiodes str. 640]
Length = 453
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P +Y+ + DG N+ + S W P + + Y + F+S
Sbjct: 184 RIAYVLRIHNDQYPYELYISDYDGHNQISICRSTEPLMSPAWSPDGKKIAYVT----FSS 239
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SE+ I ++N V+ + + R +N P+ SPD K + F ++TG NLYIMD
Sbjct: 240 GHSELVIQALNTGLVNNIVSFPR------HNGAPAFSPDCKKLAFSLSKTGSLNLYIMDL 293
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
E GE + +LT+ ++T +W PD + IA+ SD+ GS ++Y I+ +++L
Sbjct: 294 ESGE---ITQLTKNRNNNTEPSWFPDNQNIAYTSDQ----GGSPQIYKINVKTAEIQRLS 346
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++ + +P S DG I+ + + G
Sbjct: 347 WLHTSNQ--NPNVSSDGTFIIMVNRHQG 372
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 40/257 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD ++ Y T G+++L+++ + + L + +S R +G+ P+FSP
Sbjct: 221 MSPAWSPDGKKIAY------VTFSSGHSELVIQALNTGLVNNIVSFPRHNGA-PAFSPDC 273
Query: 431 DRIAF----VEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
++AF +Y+++ + Q+ +T W P + + YTS G P+
Sbjct: 274 KKLAFSLSKTGSLNLYIMDLESGEITQLTKNRNNNTEPSWFPDNQNIAYTSDQGGSPQ-- 331
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
I INV + ++RL+ +N P+VS DG +I+ + G +N+ ++
Sbjct: 332 -------IYKINVKTAE----IQRLSWLHTSNQNPNVSSDGTFIIMVNRHQGKQNIAKLN 380
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRK 600
G+ LT+ +DT + +P+ + +++ ++D + E+ I G K
Sbjct: 381 LLTGQE---EILTDTLLADT-PSIAPNNTMVVYSNINKDLTTKSNLELISI----DGHFK 432
Query: 601 LIQSGSAGRANHPYFSP 617
G G P +SP
Sbjct: 433 AHIQGDQGDIRFPTWSP 449
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYI D +G + R TE S WSPDG+ IA+ + SG E+ +I T
Sbjct: 200 LYISDYDGHNQISICRSTEPLMSPA---WSPDGKKIAYVTF----SSGHSEL-VIQALNT 251
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFT-SDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL I S P FSPD K + F+ S G ++ ++ + L+
Sbjct: 252 GLVNNIVSFPRHNGA-PAFSPDCKKLAFSLSKTGSLN---------------LYIMDLES 295
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++ +LT+N + P+W P
Sbjct: 296 GEITQLTKNRNNNTEPSWFP 315
>gi|430004581|emb|CCF20380.1| Protein tolB precursor [Rhizobium sp.]
Length = 434
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 51/287 (17%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNR 451
+DG N L N K DI L P FSP + ++ F G VY++ + R
Sbjct: 189 QDGFNVRQLTNSK----DIVLT------PRFSPNRQEVTYMSFEGDQPRVYLLQLETGQR 238
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
V + F+ + P + V+ + + +I ++++ RLT
Sbjct: 239 EVVGNFPGMTFAPRFSPDGQKVIMS------LQQEGNSNIYTMDLRS----RTTTRLTNT 288
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ PS SPDG IVF S R G + LY+M G +G G R++ G S + WSP G
Sbjct: 289 AAIDTSPSYSPDGSRIVFESDRGGRQQLYVM---GADGSGQTRISFGDGSYSTPVWSPRG 345
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDY 628
+ IAF G F + ++ P+G+G R L + G N P ++P+G+ ++F
Sbjct: 346 DLIAFTKQ----SGGKFSIGVMKPDGSGERIL----TTGFHNEGPTWAPNGRVLMFFRQN 397
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +++ I L G + +++ ++ PAW P
Sbjct: 398 AGAGGP------------QLYSIDLTGYNEQQIKTPAYAS-DPAWSP 431
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + + + D DG + VR+LT + P SP+ + + + S
Sbjct: 168 VVFVSESGPKNARQRQ------LAIMDQDGFN-VRQLTNSKDIVLTPRFSPNRQEVTYMS 220
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + ++ G+ +Y
Sbjct: 221 FEGDQPRVYLLQLETGQREVVGNF---PGMTFAPRFSPDGQKVIMSLQQE----GNSNIY 273
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + +A P +SPDG IVF SD GG +++
Sbjct: 274 TMDLRSRTTTRL--TNTAAIDTSPSYSPDGSRIVFESDRGGRQ--------------QLY 317
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS R+ SF DG TP W PR
Sbjct: 318 VMGADGSGQTRI---SFGDGSYSTPVWSPR 344
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP K I + S +I DL LT + T +P
Sbjct: 245 PGM-TFAPRFSPDGQKVIMSLQQEGNS---NIYTMDLRSRTTTRLTNTAAIDT---SPSY 297
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD SR+ + RGG + DG+ Q + DGS+ P +SP+G
Sbjct: 298 SPDGSRIVFESDRGGRQQLYVMGADGSGQTRISF------------GDGSYSTPVWSPRG 345
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ DGS R + F N T W P +++ +GGP+
Sbjct: 346 DLIAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQ 404
Query: 480 FASESSEVDIISINVDDV 497
S +D+ N +
Sbjct: 405 LYS----IDLTGYNEQQI 418
>gi|347538070|ref|YP_004845494.1| translocation protein TolB [Pseudogulbenkiania sp. NH8B]
gi|345641247|dbj|BAK75080.1| translocation protein TolB [Pseudogulbenkiania sp. NH8B]
Length = 428
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 44/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G +IA+V F P V+V N RR V FK + S W P + AVV T+
Sbjct: 201 PAWSPDGGKIAYVSFEAKKPVVWVQNLVTGQRRIVANFKGSNSAPAWSPDGRQLAVVLTT 260
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G +S++ +I D +G A RR+T + + P+ SPDG + F S R G
Sbjct: 261 SG------TSQIYVI-----DANGGGA-RRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGP 308
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+ GG RL+ + SPDG +++ + G F + ++
Sbjct: 309 QIYVQPVAGGSA---RRLSWDGSYNVSPKVSPDGRTLSYIRRQ----GGQFRV-VVQDLA 360
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+G +++ SG+ P F+P+ + ++F SD GG S +TP DG
Sbjct: 361 SGDNRVLSSGAYN--ERPSFAPNSRMVLFASDEGGRSVLYAATP--------------DG 404
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
S RL + + PAWGP
Sbjct: 405 SSKVRLAVINGDVQDPAWGP 424
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 43/257 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD ++ Y E + ++N+ + I + F+ S P++SP G
Sbjct: 199 ISPAWSPDGGKIAYVSF------EAKKPVVWVQNLVTGQRRIVANFKGSNSAPAWSPDGR 252
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++A V +YV++++G R+V NA T W P + + S GGP+
Sbjct: 253 QLAVVLTTSGTSQIYVIDANGGGARRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGPQ--- 309
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I V V G SA RRL+ +G N P VSPDG+ + + + G + + D
Sbjct: 310 ---------IYVQPVAGGSA-RRLSWDGSYNVSPKVSPDGRTLSYIRRQGGQFRVVVQDL 359
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL- 601
G+ L+ G +++ +++P+ + FASD G +Y P+G+ +L
Sbjct: 360 ASGDN---RVLSSGAYNE-RPSFAPNSRMVLFASDE----GGRSVLYAATPDGSSKVRLA 411
Query: 602 -----IQSGSAGRANHP 613
+Q + G NHP
Sbjct: 412 VINGDVQDPAWGPFNHP 428
>gi|224826140|ref|ZP_03699243.1| Tol-Pal system beta propeller repeat protein TolB
[Pseudogulbenkiania ferrooxidans 2002]
gi|224601777|gb|EEG07957.1| Tol-Pal system beta propeller repeat protein TolB
[Pseudogulbenkiania ferrooxidans 2002]
Length = 428
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 44/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G +IA+V F P V+V N RR V FK + S W P + AVV T+
Sbjct: 201 PAWSPDGGKIAYVSFEAKKPVVWVQNLVTGQRRIVANFKGSNSAPAWSPDGRQLAVVLTT 260
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G +S++ +I D +G A RR+T + + P+ SPDG + F S R G
Sbjct: 261 SG------TSQIYVI-----DANGGGA-RRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGP 308
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y+ GG RL+ + SPDG +++ + G F + ++
Sbjct: 309 QIYVQPVAGGSA---RRLSWDGSYNVSPKVSPDGRTLSYIRRQ----GGQFRV-VVQDLA 360
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+G +++ SG+ P F+P+ + ++F SD GG S +TP DG
Sbjct: 361 SGDNRVLSSGAYN--ERPSFAPNSRMVLFASDEGGRSVLYAATP--------------DG 404
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
S RL + + PAWGP
Sbjct: 405 SSKVRLAVINGDVQDPAWGP 424
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 43/257 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD ++ Y E + ++N+ + I + F+ S P++SP G
Sbjct: 199 ISPAWSPDGGKIAYVSF------EAKKPVVWVQNLVTGQRRIVANFKGSNSAPAWSPDGR 252
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++A V +YV++++G R+V NA T W P + + S GGP+
Sbjct: 253 QLAVVLTTSGTSQIYVIDANGGGARRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGPQ--- 309
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I V V G SA RRL+ +G N P VSPDG+ + + + G + + D
Sbjct: 310 ---------IYVQPVAGGSA-RRLSWDGSYNVSPKVSPDGRTLSYIRRQGGQFRVVVQDL 359
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL- 601
G+ L+ G +++ +++P+ + FASD G +Y P+G+ +L
Sbjct: 360 ASGDN---RVLSSGAYNE-RPSFAPNSRMVLFASDE----GGRSVLYAATPDGSSKVRLA 411
Query: 602 -----IQSGSAGRANHP 613
+Q + G NHP
Sbjct: 412 VINGDVQDPAWGPFNHP 428
>gi|378578942|ref|ZP_09827615.1| periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
gi|377818455|gb|EHU01538.1| periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Length = 431
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVIQTLSN------GSVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G+ ++Y I NG +++
Sbjct: 277 ASGQ---IRQITDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKISINGGASQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + + DGKS+V S GG + K L ++ LT
Sbjct: 330 WEGAQNQDAD--VASDGKSMVMISTSGGAQ--------------HVAKQDLVTGAVQTLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGKSALVIQTLSNGSVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTS---GGPEFAS 482
++AF +YV++ RQ+ N+ W P + + YTS G P+
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWFPDSQTLAYTSDQAGAPQIYK 317
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
ISIN A +R+T G N V+ DGK +V ST G +++ D
Sbjct: 318 -------ISING------GASQRITWEGAQNQDADVASDGKSMVMISTSGGAQHVAKQDL 364
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 365 VTG---AVQTLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL- 415
Query: 603 QSGSAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 416 -PATDGQVKFPAWSP 429
>gi|419957805|ref|ZP_14473871.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
GS1]
gi|388607963|gb|EIM37167.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
GS1]
Length = 412
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 148 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVT----FES 203
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 204 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI 257
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 258 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIT 310
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 311 WEGS--QNQDADVSADGKTMVMVSTAGG 336
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 185 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 238
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 239 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 292
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK +V ST G +++ D G
Sbjct: 293 RPQVYKVNING----GAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTG 348
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 349 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 398
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 399 TDGQVKSPAWSP 410
>gi|158317342|ref|YP_001509850.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
gi|158112747|gb|ABW14944.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
Length = 721
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 88/190 (46%), Gaps = 31/190 (16%)
Query: 497 VDGVSAVRRLTTNG-------KNNAFPSVSPDGKWIVFRST--RTGYKN--LYIMDAEGG 545
DG + +L T+G ++A PS+SPDGK++V RST +G+ N LY++ +G
Sbjct: 506 ADGSGSPVKLFTSGPAAKLTIADDARPSLSPDGKFLVVRSTTDESGFPNPGLYVVSLDGS 565
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
GL RL P + T WSP GE IA+ S G P+ I +G
Sbjct: 566 ---GLFRLGAKPQA-TDPAWSPSGELIAYWSSETESDRGFIVTIPARPDSQ--PTPITNG 619
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
R P FSPDGK I F+ + G EI+++ DGS ++R+T
Sbjct: 620 QGNRDADPTFSPDGKRIAFSREVDGDL--------------EIYQMNTDGSAVERVTAEP 665
Query: 666 FEDGTPAWGP 675
D PA+ P
Sbjct: 666 GRDQDPAYSP 675
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 412 PDISLFRFDGSFPSFSPKG---------DRIAFVEFPGVYVVNSDGSNRRQVYFK-NAFS 461
P L D + PS SP G D F PG+YVV+ DGS ++ K A
Sbjct: 520 PAAKLTIADDARPSLSPDGKFLVVRSTTDESGFPN-PGLYVVSLDGSGLFRLGAKPQATD 578
Query: 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN--AFPSVS 519
W P E + Y S +ES I++I + + TNG+ N A P+ S
Sbjct: 579 PAWSPSGELIAYWSS----ETESDRGFIVTIPARPDSQPTPI----TNGQGNRDADPTFS 630
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
PDGK I F G +Y M+ +G + R+T P D +SPDG+ ++F +R
Sbjct: 631 PDGKRIAFSREVDGDLEIYQMNTDGS---AVERVTAEPGRDQDPAYSPDGKLLSFTGERG 687
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
P +YL P T + + +AG
Sbjct: 688 TP---LRRIYLTDPADTTAADRLLTSTAG 713
>gi|449472419|ref|XP_004153588.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 431
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 330 WEGS--QNQDADVSADGKTMVMVSTAGG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK +V ST G +++ D G
Sbjct: 312 RPQVYKVNING----GAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQILSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|334122821|ref|ZP_08496856.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
hormaechei ATCC 49162]
gi|333391688|gb|EGK62798.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
hormaechei ATCC 49162]
Length = 431
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 330 WEGS--QNQDADVSADGKTMVMVSTAGG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK +V ST G +++ D G
Sbjct: 312 RPQVYKVNING----GAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQILSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|294013406|ref|YP_003546866.1| TolB protein [Sphingobium japonicum UT26S]
gi|292676736|dbj|BAI98254.1| TolB protein [Sphingobium japonicum UT26S]
Length = 417
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVN-SDGSNR 451
DG N + N +S I+L P FSP I +V + +YV + G R
Sbjct: 173 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLNNRVRIYVYDIGTGKQR 222
Query: 452 RQVYFKNA-FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
NA F+ W P +++++ + + DI ++ A +RLTT
Sbjct: 223 LVTESSNATFAPRWSPDGRSILFS------MAIAGNTDIYRVSATG----GAPQRLTTAP 272
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G G R++ G WSP G+
Sbjct: 273 GIDVGGSYSPDGRQIVFESDRSGSQQIYVMNADGS---GQRRISHGGGRYATPEWSPRGD 329
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 330 LIAFTKI-----SGDFKIAVMTPSGDNERILT---NGWQDEQPSWSPNGRVLQFFR---- 377
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + + +++++ L G + +R+ PAWGP
Sbjct: 378 ------TTPGR-EGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 414
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ A P SPD K IV+ S +Y+ D G G
Sbjct: 167 LAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLNNRVRIYVYDI----GTGK 220
Query: 551 HRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL TE + WSPDG I F+ +G+ ++Y + G ++L + + G
Sbjct: 221 QRLVTESSNATFAPRWSPDGRSILFSMAI----AGNTDIYRVSATGGAPQRL--TTAPGI 274
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG+ IVF SD G +I+ + DGS +R++
Sbjct: 275 DVGGSYSPDGRQIVFESDRSGSQ--------------QIYVMNADGSGQRRISHGGGRYA 320
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 321 TPEWSPR 327
>gi|253997444|ref|YP_003049508.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylotenera mobilis JLW8]
gi|253984123|gb|ACT48981.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera
mobilis JLW8]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 54/279 (19%)
Query: 432 RIAFV-EFPGVY---VVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESS 485
RIA++ + G Y V ++DG N + V N S W P + Y S F +
Sbjct: 171 RIAYINKSKGRYALQVADADGVNPQTVVSSNEPIISPAWSPDGTKIAYVS----FEKKKP 226
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ + S+ +++ + NN+ P+ +PDG + T LY+++A+G
Sbjct: 227 IIFVQSLMTGQRITLASFK------GNNSAPAWAPDGSKLAIVLTHAANSQLYLINADGS 280
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
GL +L++ DT WSPD +W+ F+SDR GS ++Y + G +++ G
Sbjct: 281 ---GLKQLSKSSAIDTEPVWSPDAKWVYFSSDR----GGSPQIYKVSSLGGDAQRVTFDG 333
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGG---ISAEPISTPH-------------QYQPYGEIF 649
+ + P FSPDGKS+ + GG ++ + ++T + P G +
Sbjct: 334 TYNLS--PRFSPDGKSLAMIRNDGGRYRVALQNLATGQVQILSEGNQDESPSFAPNGRVV 391
Query: 650 -------------KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG +RL+++ + PAWGP
Sbjct: 392 LYATRSAGRGALAAVSADGRVKQRLSESGGDIREPAWGP 430
>gi|150397825|ref|YP_001328292.1| translocation protein TolB [Sinorhizobium medicae WSM419]
gi|166229991|sp|A6UCS7.1|TOLB_SINMW RecName: Full=Protein TolB; Flags: Precursor
gi|150029340|gb|ABR61457.1| Tol-Pal system beta propeller repeat TolB [Sinorhizobium medicae
WSM419]
Length = 436
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 209 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG +VF S R G + L
Sbjct: 266 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRVVFESDRGGRQQL 318
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 319 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 371
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 372 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 415
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + F PAW P
Sbjct: 416 NEQLVPTQGFAS-DPAWSP 433
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
+VY + GP+ A + + + D DG ++ R LT + P SP+ + I + S
Sbjct: 170 IVYVAESGPKNARQRQ------LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMS 222
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + ++ G+ +Y
Sbjct: 223 FENQQPRVYLLQLETGQREVVGNF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIY 275
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + +A P +SPDG +VF SD GG +++
Sbjct: 276 TMDLRSRTTTRL--TNTAAIDTSPSYSPDGSRVVFESDRGGRQ--------------QLY 319
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS R+ SF DG TP W PR
Sbjct: 320 VMGADGSGQTRI---SFGDGSYSTPVWSPR 346
>gi|27382263|ref|NP_773792.1| translocation protein TolB [Bradyrhizobium japonicum USDA 110]
gi|27355434|dbj|BAC52417.1| tolB protein [Bradyrhizobium japonicum USDA 110]
Length = 491
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 43/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 255 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 311
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 312 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 364
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 365 YVMAAGGGAAQRISFSKDDTNATYSTPV--WSPRGDYIAFTRQ----GGGQFSIGVMKPD 418
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+G R L ++G N P FSP+G+ ++F D GG S P ++ + +
Sbjct: 419 GSGERLL----TSGFHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLYSVDI 462
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 463 SGRNELKVPTPGFAS-DPAWSP 483
>gi|392964518|ref|ZP_10329939.1| Protein tolB [Fibrisoma limi BUZ 3]
gi|387847413|emb|CCH51983.1| Protein tolB [Fibrisoma limi BUZ 3]
Length = 316
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 96/215 (44%), Gaps = 49/215 (22%)
Query: 497 VDGVSAVRRLTTNGKNNA--FPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHR 552
VD VS TN + +P+ SPDGK IVF S R K +LYI +A+G L
Sbjct: 45 VDPVSGTSINLTNAPQSEERYPAWSPDGKMIVFTSNRGDGKTFDLYIANADGSRAQALTH 104
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
L G + C ++ DG++I F N G+ S ++Y I PNG ++ + Q GR +
Sbjct: 105 LPAGSVAYWPC-FTADGQYIYF-----NEGNSS-QIYRIRPNGKDMKAMAQ----GRDGN 153
Query: 613 PYFSPDGKSIVFT--------------------------SDYGGIS------AEPISTPH 640
SPDGK IV+T S GGI+ + I+
Sbjct: 154 --ISPDGKQIVYTQQGTNGFGVWVMNADGSNRKQIIPNESQIGGIAPVWSHDGKMIAFSG 211
Query: 641 QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Y EIF DGSDLK++T +PA+ P
Sbjct: 212 QAGDYAEIFVCNADGSDLKQITHLKKISSSPAFSP 246
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 425 SFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
+ SP G +I + + GV+V+N+DGSNR+Q+ + P V++ G
Sbjct: 153 NISPDGKQIVYTQQGTNGFGVWVMNADGSNRKQIIPNESQIGGIAP-----VWSHDGKMI 207
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
A D I V + DG S ++++T K ++ P+ SPD +++ FR T Y
Sbjct: 208 AFSGQAGDYAEIFVCNADG-SDLKQITHLKKISSSPAFSPDNQYLTFRVTEEAY 260
>gi|451823295|ref|YP_007459569.1| TolB protein [Candidatus Kinetoplastibacterium desouzaii TCC079E]
gi|451776095|gb|AGF47136.1| TolB protein [Candidatus Kinetoplastibacterium desouzaii TCC079E]
Length = 438
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 51/309 (16%)
Query: 394 TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP--KGDRIAFVEFPGVYVVNSDGSNR 451
TR + NN L L IK + L+ + S SP K D ++F GS
Sbjct: 99 TRANKNNHLAL--IKVNYQENDLYEIEFSLEETSPNVKLDNVSF-----------SGSLE 145
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSG--GPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
+ + S D + + G + A + + DI + + D +G ++ L +
Sbjct: 146 DMMVISHLIS---DRIYHTITGKRGIFSTKLAYIAKKNDIFELQISDYNGQNSQTALRS- 201
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR--LTEGPWSDTMCNWSP 567
+ P SPDG I + S +G +YI D + R L + S++ +WSP
Sbjct: 202 SEPIISPQWSPDGTKIAYVSFESGRPIIYIHDL-----FNTQRIILADHKGSNSAPSWSP 256
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
DG IA + + +G ++Y++ R++IQS + P FSPDG+ IVFTSD
Sbjct: 257 DGTKIALSMTK----TGLSQIYMLDLKDKNFRRIIQSSACDT--EPSFSPDGQYIVFTSD 310
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVK 687
G +I+ + G ++RLT NS +G+P + + V V+ V
Sbjct: 311 RSG--------------SQQIYLTDIYGQKVRRLTFNSIYNGSPKFSTDGKKIVYVKNVN 356
Query: 688 NEQCAFEDC 696
N+ F+ C
Sbjct: 357 NK---FQIC 362
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVRE------AVVYTSGG 477
P +SP G +IA+V F S R +Y + F+T + + A ++ G
Sbjct: 208 PQWSPDGTKIAYVSFE---------SGRPIIYIHDLFNTQRIILADHKGSNSAPSWSPDG 258
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ A ++ + I + D+ RR+ + + PS SPDG++IVF S R+G + +
Sbjct: 259 TKIALSMTKTGLSQIYMLDLKD-KNFRRIIQSSACDTEPSFSPDGQYIVFTSDRSGSQQI 317
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ D G + + RLT + +S DG+ I + + +N F++ I +G
Sbjct: 318 YLTDIYGQK---VRRLTFNSIYNGSPKFSTDGKKIVYVKNVNNK----FQICSIDL-SSG 369
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+I G + +P SP+G+ I+ Y IS + Q I L+
Sbjct: 370 EESMITHGENDQ--NPCLSPNGEYII----YSHISKNNFRSLSQ---------ISLENHQ 414
Query: 658 LKRLTQN-SFEDGTPAWGP 675
K + +N +E P+WGP
Sbjct: 415 TKNIKENIDYEIFDPSWGP 433
>gi|399068467|ref|ZP_10749015.1| tol-pal system beta propeller repeat protein TolB [Caulobacter sp.
AP07]
gi|398045684|gb|EJL38381.1| tol-pal system beta propeller repeat protein TolB [Caulobacter sp.
AP07]
Length = 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 24/160 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG + F + G ++Y++D R+T P DT ++SPDG I F
Sbjct: 253 PRFSPDGTKVAFSVEKGGNSDIYVLDLRS---RASTRITTDPAIDTSPSFSPDGSKIVFN 309
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
SDR G ++Y+++ +G+G+R++ G GR P +SP G + FT GG
Sbjct: 310 SDR----GGQAQLYVMNSDGSGVRRISYGG--GRYTTPVWSPRGDFVAFTKQTGG----- 358
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+ I ++ DG D +RL S+ D P W P
Sbjct: 359 -----QFH----IGVMRPDGGD-ERLLTTSYLDEGPTWAP 388
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A R+TT+ + PS SPDG IVF S R G LY+M+++G G+ R++ G T
Sbjct: 283 ASTRITTDPAIDTSPSFSPDGSKIVFNSDRGGQAQLYVMNSDGS---GVRRISYGGGRYT 339
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
WSP G+++AF G F + ++ P+G R L S P ++P+G+
Sbjct: 340 TPVWSPRGDFVAFTKQT----GGQFHIGVMRPDGGDERLLTTS---YLDEGPTWAPNGRV 392
Query: 622 IVFTSD 627
++F+ +
Sbjct: 393 LMFSRE 398
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 30/187 (16%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEGGEGYGLHRLTEG- 556
++ V++L ++ A PS DG +IV R + T + Y+ G L L G
Sbjct: 180 MARVKKLAIMDQDGANPSYITDGSYIVMTPRFSATSQEITYMALRPTGSSIYLLNLQTGR 239
Query: 557 -------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
P +SPDG +AF+ ++ G+ ++Y++ ++ +
Sbjct: 240 TETVGKFPGMVFAPRFSPDGTKVAFSVEK----GGNSDIYVLDLRSRASTRITTDPAID- 294
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P FSPDG IVF SD GG +++ + DGS ++R++
Sbjct: 295 -TSPSFSPDGSKIVFNSDRGG--------------QAQLYVMNSDGSGVRRISYGGGRYT 339
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 340 TPVWSPR 346
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 107/286 (37%), Gaps = 86/286 (30%)
Query: 341 RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400
RPT S I L +L + + +F P SPD ++V + S + GN+
Sbjct: 224 RPTGS--SIYLLNLQTGRTETVGKF---PGMVFAPRFSPDGTKVAF------SVEKGGNS 272
Query: 401 QLLLENIKS---------PLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR 451
+ + +++S P D S PSFSP G +I F NSD +
Sbjct: 273 DIYVLDLRSRASTRITTDPAIDTS--------PSFSPDGSKIVF---------NSDRGGQ 315
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
Q+Y N+ DG S VRR++ G
Sbjct: 316 AQLYVMNS--------------------------------------DG-SGVRRISYGGG 336
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
P SP G ++ F G ++ +M +GG+ RL + D W+P+G
Sbjct: 337 RYTTPVWSPRGDFVAFTKQTGGQFHIGVMRPDGGD----ERLLTTSYLDEGPTWAPNGRV 392
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ F+ + SG+ ++ + G LR G+ A+ P +SP
Sbjct: 393 LMFSRESS---SGNSRLWTVDVTGRILRAAAYQGA---ASDPAWSP 432
>gi|390448436|ref|ZP_10234056.1| translocation protein TolB [Nitratireductor aquibiodomus RA22]
gi|389666177|gb|EIM77632.1| translocation protein TolB [Nitratireductor aquibiodomus RA22]
Length = 437
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 50/287 (17%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG NQ L + ++ + P FSP I ++ + P VY++ + R
Sbjct: 191 QDGANQRFLTDGRAIVLT----------PRFSPTRQEITYMSYEGGQPQVYLLQLETGQR 240
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
V + F+ + P + +V + + S +D+ S N RLTT+
Sbjct: 241 ELVGNFPGMTFAPRFSPNGQQIVMSLLRDDGNSNIFAMDLRSRNTT---------RLTTS 291
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ PS SPDG IVF S R G +Y+M A GG+ R++ G + + WSP G
Sbjct: 292 NAIDTSPSYSPDGSQIVFTSDRGGRAQIYVMSASGGDP---KRISFGDGTYSTPVWSPRG 348
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ IAF G F++ ++ +G+G R L S P ++P+G+ ++F
Sbjct: 349 DLIAFTKQT----RGEFQIGVMRTDGSGERIL---SSGFLQEGPTWAPNGRVVMFFRQPA 401
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
G SA P +++ I L G + +++ T N D PAW P
Sbjct: 402 G-SAGP-----------QLYSIDLTGRNEQKIPTANYGSD--PAWSP 434
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A +R T+G+ P SP + I + S G +Y++ E G+
Sbjct: 186 LAIMDQDG--ANQRFLTDGRAIVLTPRFSPTRQEITYMSYEGGQPQVYLLQLETGQ---R 240
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SP+G+ I + RD+ S F M L N T L + S
Sbjct: 241 ELVGNFPGMTFAPRFSPNGQQIVMSLLRDDGNSNIFAMDLRSRNTTRL-----TTSNAID 295
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVFTSD GG +I+ + G D KR+ SF DGT
Sbjct: 296 TSPSYSPDGSQIVFTSDRGG--------------RAQIYVMSASGGDPKRI---SFGDGT 338
Query: 671 ---PAWGPR 676
P W PR
Sbjct: 339 YSTPVWSPR 347
>gi|32699699|sp|Q89ED5.2|TOLB_BRAJA RecName: Full=Protein TolB; Flags: Precursor
Length = 454
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 43/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 218 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 274
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 275 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 327
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 328 YVMAAGGGAAQRISFSKDDTNATYSTPV--WSPRGDYIAFTRQ----GGGQFSIGVMKPD 381
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+G R L ++G N P FSP+G+ ++F D GG S P ++ + +
Sbjct: 382 GSGERLL----TSGFHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLYSVDI 425
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 426 SGRNELKVPTPGFAS-DPAWSP 446
>gi|238757962|ref|ZP_04619143.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236]
gi|238703716|gb|EEP96252.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ SA++++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANSAIKQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + SPDGK +V S GG I K L+ ++ LT
Sbjct: 329 WEGS--QNQNADVSPDGKFLVLVSSNGGAQ--------------HIAKQDLETGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSIAP 384
>gi|408378750|ref|ZP_11176346.1| translocation protein TolB [Agrobacterium albertimagni AOL15]
gi|407747200|gb|EKF58720.1| translocation protein TolB [Agrobacterium albertimagni AOL15]
Length = 434
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 121/287 (42%), Gaps = 51/287 (17%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNR 451
+DG N +L N DI L P FSP I ++ F G VY++ + R
Sbjct: 189 QDGENIRMLTNSN----DIVLT------PRFSPSRQEITYMSFEGQQPRVYLLQLETGAR 238
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
V + F+ + P + V+ + + +I ++++ RLT
Sbjct: 239 EVVGNFPGMTFAPRFSPDGQRVIMS------LQQDGNANIYTMDLRS----RTTTRLTNT 288
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ PS SPDG IVF S R G + LY+M G +G G R++ G S + WSP G
Sbjct: 289 AAIDTSPSYSPDGSQIVFESDRGGRQQLYVM---GADGSGQRRISFGDGSYSTPVWSPRG 345
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDY 628
+ IAF G F + ++ +G+G R L + G N P ++P+G+ ++F
Sbjct: 346 DLIAFTKQ----SGGRFSIGVMKTDGSGERIL----TTGFHNEGPTWAPNGRVLMFFRQN 397
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +++ I L G + + + SF PAW P
Sbjct: 398 AGAGGP------------QLYSIDLSGYNEQLVKTPSFAS-DPAWSP 431
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + +R LT + P SP + I + S +Y++ E G
Sbjct: 184 LAIMDQDGEN-IRMLTNSNDIVLTPRFSPSRQEITYMSFEGQQPRVYLLQLETG---ARE 239
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ P +SPDG+ + + +D G+ +Y + +L + +A
Sbjct: 240 VVGNFPGMTFAPRFSPDGQRVIMSLQQD----GNANIYTMDLRSRTTTRL--TNTAAIDT 293
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS +R+ SF DG
Sbjct: 294 SPSYSPDGSQIVFESDRGGRQ--------------QLYVMGADGSGQRRI---SFGDGSY 336
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 337 STPVWSPR 344
>gi|406831840|ref|ZP_11091434.1| hypothetical protein SpalD1_09379 [Schlesneria paludicola DSM
18645]
Length = 343
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 17/193 (8%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+D+ +N D + + RLT + +A S S DGK IVF S R G +LY+MDA+G
Sbjct: 134 HMDLYVVNFDG----TGMTRLTDSPGYDAEGSYSSDGKQIVFTSMRDGDPDLYVMDADGS 189
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ P D +SPD +WI F SDR +++ I +G +L +
Sbjct: 190 N---VRQLTDHPGYDGGPFFSPDNQWIVFRSDRQK--EHMLQLFAISVDGKTEVQL--TD 242
Query: 606 SAGRANH-PYFSPDGKSIVFT-SDYGGISAEPISTP-HQYQPYGEIFKIKLDGSDLKRLT 662
+ + N PYF P GK ++++ +DY S P + P H + EI + G + ++T
Sbjct: 243 NLEQVNWCPYFHPSGKYLIWSGADY---SKGPQNAPFHLFTMEVEIQRDSFKGGAVTQIT 299
Query: 663 QNSFEDGTPAWGP 675
++ +D P + P
Sbjct: 300 HSTAQDVLPVFSP 312
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+S +R++T+ S DGKWIV+++ GY Y + + + ++ G
Sbjct: 26 MSNIRQVTSGLPRAGEGYFSADGKWIVYQAYPIGYP-FYQIYVQKLDEKTPRLVSTGRGR 84
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFE------------------------MYLIHPNG 595
T +SPDG+ I FAS +P E +Y+++ +G
Sbjct: 85 TTCAYFSPDGKKILFASSHTDPSIDQTELKAREEAAKGGRRRYLWDFDPHMDLYVVNFDG 144
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
TG+ +L + S G +S DGK IVFTS G +P +++ + DG
Sbjct: 145 TGMTRL--TDSPGYDAEGSYSSDGKQIVFTSMRDG---DP-----------DLYVMDADG 188
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
S++++LT + DG P + P
Sbjct: 189 SNVRQLTDHPGYDGGPFFSP 208
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 425 SFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGP 478
S+S G +I F P +YV+++DGSN RQ+ + + P + +V
Sbjct: 161 SYSSDGKQIVFTSMRDGDPDLYVMDADGSNVRQLTDHPGYDGGPFFSPDNQWIV------ 214
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF------RSTRT 532
F S+ + ++ + VDG + V+ + N P P GK++++ + +
Sbjct: 215 -FRSDRQKEHMLQLFAISVDGKTEVQLTDNLEQVNWCPYFHPSGKYLIWSGADYSKGPQN 273
Query: 533 GYKNLYIMDAE----GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
+L+ M+ E +G + ++T D + +SP+G+ + + S R G+
Sbjct: 274 APFHLFTMEVEIQRDSFKGGAVTQITHSTAQDVLPVFSPNGKSLMWTSTRTPDGT 328
>gi|116748201|ref|YP_844888.1| TolB domain-containing protein [Syntrophobacter fumaroxidans MPOB]
gi|116697265|gb|ABK16453.1| TolB, N-terminal domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 457
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 115/258 (44%), Gaps = 43/258 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTR------EDGNNQLLLENIKSPLPDISLFRFDGSFPSF 426
L+P +P S++ Y R G+ + +DG+++LL P +IS P++
Sbjct: 225 LSPAWNPQMSQIAYVSYRDGNAKIYLLNLQDGSSRLL---CGYPGMNIS--------PAW 273
Query: 427 SPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSGGPE 479
P +A P +++V++ Q + V W P ++ + S
Sbjct: 274 RPGRPELAVTLTRDGNPDIFLVSASSGQILQKLVQGRSINVSPDWSPDGRSLAFVS---- 329
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
ES I +I+V G RRLT +G N PS SP G +I + T G +++I
Sbjct: 330 --DESGNPQIYAIDV----GSGQKRRLTFSGTYNTSPSWSPKGDFIAYSGTVGGRHHIFI 383
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M +G G +LT+G D WSPDG IAF+S R G +++ NG G+R
Sbjct: 384 MKTDGS---GNRQLTDGDGDDVSPTWSPDGRMIAFSSTR----QGGSAIWVSSVNGIGVR 436
Query: 600 KLIQSGSAGRANHPYFSP 617
+L + G G P +SP
Sbjct: 437 RLTRQG--GGQELPDWSP 452
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 42/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKNA-FSTVWDPVRE--AVVYTS 475
P+++P+ +IA+V + +Y++N DGS+R + S W P R AV T
Sbjct: 227 PAWNPQMSQIAYVSYRDGNAKIYLLNLQDGSSRLLCGYPGMNISPAWRPGRPELAVTLTR 286
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G + ++ ++S + + +++L N P SPDG+ + F S +G
Sbjct: 287 DG------NPDIFLVSASSGQI-----LQKLVQGRSINVSPDWSPDGRSLAFVSDESGNP 335
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y +D G+ RLT +T +WSP G++IA++ G ++++ +G
Sbjct: 336 QIYAIDVGSGQK---RRLTFSGTYNTSPSWSPKGDFIAYSGTV----GGRHHIFIMKTDG 388
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+G R+L + G P +SPDG+ I F+S G SA +S+ ++G
Sbjct: 389 SGNRQL--TDGDGDDVSPTWSPDGRMIAFSSTRQGGSAIWVSS--------------VNG 432
Query: 656 SDLKRLTQNSFEDGTPAWGPRF 677
++RLT+ P W PR
Sbjct: 433 IGVRRLTRQGGGQELPDWSPRM 454
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 38/250 (15%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
+IA+V+ G +++ + DGSN Q N+ S W+P + Y S
Sbjct: 191 KIAYVQSMGKNKEIFISDFDGSNPVQASRDNSLSLSPAWNPQMSQIAYVS------YRDG 244
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +N+ D + R L N P+ P + TR G +++++ A G
Sbjct: 245 NAKIYLLNLQD----GSSRLLCGYPGMNISPAWRPGRPELAVTLTRDGNPDIFLVSASSG 300
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ L +L +G + +WSPDG +AF SD SG+ ++Y I R+L SG
Sbjct: 301 QI--LQKLVQGRSINVSPDWSPDGRSLAFVSDE----SGNPQIYAIDVGSGQKRRLTFSG 354
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+ P +SP G I ++ GG IF +K DGS ++LT
Sbjct: 355 TYN--TSPSWSPKGDFIAYSGTVGGRH--------------HIFIMKTDGSGNRQLTDGD 398
Query: 666 FEDGTPAWGP 675
+D +P W P
Sbjct: 399 GDDVSPTWSP 408
>gi|292487661|ref|YP_003530534.1| protein TolB [Erwinia amylovora CFBP1430]
gi|292898898|ref|YP_003538267.1| TolB colicin import protein [Erwinia amylovora ATCC 49946]
gi|428784596|ref|ZP_19002087.1| Protein tolB precursor [Erwinia amylovora ACW56400]
gi|291198746|emb|CBJ45855.1| TolB colicin import protein [Erwinia amylovora ATCC 49946]
gi|291553081|emb|CBA20126.1| Protein tolB precursor [Erwinia amylovora CFBP1430]
gi|426276158|gb|EKV53885.1| Protein tolB precursor [Erwinia amylovora ACW56400]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 276 GSGQ---IRQITDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 329 WEGAQNQDAD--VSADGKSMVMISTNSGAQ--------------HVARQDLVTGAVQKLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T G N VS DGK +V ST +G +++ D G
Sbjct: 311 RPQIYKIGVNG----GTAQRITWEGAQNQDADVSADGKSMVMISTNSGAQHVARQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQKLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|413958831|ref|ZP_11398070.1| translocation protein TolB [Burkholderia sp. SJ98]
gi|413941411|gb|EKS73371.1| translocation protein TolB [Burkholderia sp. SJ98]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 144/376 (38%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G + F++ + + P Y L+D VK + + VS ++ H + +I
Sbjct: 94 AKGADAFVSGSVNKLPNGQYEVRFRLYDTVKQQNLGGLSLVSAESGLRMSAHKIADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLLGGRGVFATRLSYVIQTGGRYQLQISDSDGQDAKIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + ++ W P + S
Sbjct: 206 DGTKVAYVSFEKKKPVVYIHDLPTGRRVVVSNQKGNNSAPSWSPDGRKLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I +N D S +RRLT + P SPDG WI F S R G +Y M A
Sbjct: 260 RTGNTQIFEVNADG----SGLRRLTQGSSIDTEPFYSPDGNWIYFTSDRGGQPQIYKMPA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLR 599
G R+T +T SPDG+ +A+ S G F++Y L TGL
Sbjct: 316 AGESAGAAQRVTFAGAYNTSPRVSPDGKQLAYISRT----GGGFKLYLQDLASGTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGVVREPSWGP 427
>gi|226312267|ref|YP_002772161.1| peptidase [Brevibacillus brevis NBRC 100599]
gi|226095215|dbj|BAH43657.1| putative peptidase [Brevibacillus brevis NBRC 100599]
Length = 671
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 47/303 (15%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLE-NIKSPLPDISLFRFDGSFPSFSPKGDR 432
+P +SPD + Y + + + N+ L + ++ PLP S R ++P +SP G +
Sbjct: 21 DPQLSPDGKTLAYVENQIDESHAYQNHLYLRKLDVDDPLPLTSGSR--DTYPRWSPDGSK 78
Query: 433 IAFVE----FPGVYVVNSDGSNRRQV-YFKNAFST-VWDPVREAVVYTS---GGPEFASE 483
I+FV P +++++++G RQ+ KN S W P + +V++S G FA
Sbjct: 79 ISFVSNRSGKPQIWLIDANGGEARQLTRCKNGVSNPTWSPDGKYIVFSSILDEGETFA-- 136
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
D+ + + V R+ + F ++ K L I+ E
Sbjct: 137 ----DLEAAEEKEKAKAIHVGRMKYKSDDLGF----------IYEKN----KQLAIVHVE 178
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR--DNPGSGSFEMYLIHPNGTGLRKL 601
GE + L++GP++ T+ +WSPDG+W+A ++R D ++++I G +KL
Sbjct: 179 TGE---VTPLSDGPYNHTIGSWSPDGKWLAVTANRSEDPDFQHGIDVFIIPSEGGEWKKL 235
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ S G +P +SPDGK + + I +E S H Y I+ + SD +
Sbjct: 236 --TNSKGIFAYPTWSPDGKKLAY------IGSE--SDTHLYAAQKRIWVYDFEKSDYSCI 285
Query: 662 TQN 664
T N
Sbjct: 286 TAN 288
>gi|163796930|ref|ZP_02190886.1| TolB protein [alpha proteobacterium BAL199]
gi|159177677|gb|EDP62228.1| TolB protein [alpha proteobacterium BAL199]
Length = 207
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 478 PEFASESSEVDIISINVDDVDGV-------SAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
P F+ + ++V I+S+ D V V V RLT + + PS SPDG + F S
Sbjct: 19 PRFSPDGNQV-IMSLARDGVTDVYRMDLRTRRVTRLTNSASIDTSPSFSPDGTQVAFNSD 77
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
R G + LY+MD+ GG G+ R++ G WSP G+ IAF G F + +
Sbjct: 78 RGGAQQLYVMDSNGG---GVKRISFGQGQYATPVWSPRGDLIAFT----KIAGGQFHIGV 130
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF----TSDYGGISAEPISTPHQYQPYG 646
+ +G+G R LI SG A P ++P+G+ +V+ +D G E
Sbjct: 131 MRVDGSGER-LISSGYLVEA--PSWAPNGRVLVYFKQQRTDSAGRGGET----------- 176
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++F I L G + +R + PAW P
Sbjct: 177 KLFTIDLTGYN-EREVVTPLDASDPAWSP 204
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 318 PGLHAFTPATSP-GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPF 376
PG+ F P SP GN +++A T YR DL + LT S T +P
Sbjct: 13 PGM-TFAPRFSPDGNQVIMSLARDGVTDVYR----MDLRTRRVTRLTNSASIDT---SPS 64
Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
SPD ++V ++ RGG+ ++++ + IS + + P +SP+GD IAF
Sbjct: 65 FSPDGTQVAFNSDRGGA-----QQLYVMDSNGGGVKRISFGQGQYATPVWSPRGDLIAFT 119
Query: 437 EFPG----VYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVY 473
+ G + V+ DGS R + Y A S W P +VY
Sbjct: 120 KIAGGQFHIGVMRVDGSGERLISSGYLVEAPS--WAPNGRVLVY 161
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG + + RD G ++Y + + +L S S P FSPDG + F
Sbjct: 21 FSPDGNQVIMSLARD----GVTDVYRMDLRTRRVTRLTNSASI--DTSPSFSPDGTQVAF 74
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD GG +++ + +G +KR++ + TP W PR
Sbjct: 75 NSDRGGAQ--------------QLYVMDSNGGGVKRISFGQGQYATPVWSPR 112
>gi|456062612|ref|YP_007501582.1| translocation protein TolB [beta proteobacterium CB]
gi|455439909|gb|AGG32847.1| translocation protein TolB [beta proteobacterium CB]
Length = 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 52/306 (16%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + Q + + S P IS PS+SP G ++A+V
Sbjct: 168 STRLSYVIKEGKRYRLVISDADGQNIRNAMNSGEPIIS--------PSWSPDGKKVAYVS 219
Query: 438 F----PGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTSGGPEFASESSEVDI 489
F P +YV + + R++ N W P + + + S+ I
Sbjct: 220 FEDRKPVIYV--HELATGRRISLSNQKGNNSAPAWSPDGKKLAVS------LSKDGNTQI 271
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
IN D + ++RLT + P S DG++I F S R G +Y M AEG + G
Sbjct: 272 YGINADG----TGLQRLTRGRTIDTEPQYSADGRYIYFTSDRGGNPQIYRMSAEGEQVEG 327
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R+T T SPDG+++A+ + N G G+F +Y+++ TG + + G++
Sbjct: 328 AKRITYKQGFVTSPRISPDGKYLAYIA---NIG-GAFRLYILNL-ATGDSQALTDGTSDE 382
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+ P F+ +G+ +++++ GG + + +DG+ + L+ +
Sbjct: 383 S--PSFAANGRYVLYSTKVGGKRV--------------LAAVSVDGNSKQVLSIPGSDVR 426
Query: 670 TPAWGP 675
P+WGP
Sbjct: 427 QPSWGP 432
>gi|158422148|ref|YP_001523440.1| twin-arginine translocation pathway signal [Azorhizobium
caulinodans ORS 571]
gi|158329037|dbj|BAF86522.1| twin-arginine translocation pathway signal precursor [Azorhizobium
caulinodans ORS 571]
Length = 450
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P V+++N + R V + +F+ + P + V+ +
Sbjct: 223 PRFSPTSQEITYMSYAQGEPRVFLLNIETGQREIVGNFPGMSFAPRFSPDGQRVIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I +++ A RLT + P SPDG+ I F S R G +
Sbjct: 280 ---LQQGGNANIFVMDLRS----KATTRLTDTPAIDTAPCYSPDGRQICFESDRGGSSQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G WSP G+ IAF G F + ++ P+G G
Sbjct: 333 YVMNADGS---GQRRISFGNARYNTPVWSPRGDVIAFTRQ----AEGKFAIGVMRPDGQG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P F+P+G+ I+F D G +F I + G
Sbjct: 386 ERVLTE----GYHNEGPTFAPNGRVIMFFRDPPGGGGP------------NLFTIDVTGY 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +R+ S+ PAW P
Sbjct: 430 NEQRVPTPSY-GSDPAWSP 447
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 26/199 (13%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES D + + + D DG + V LT P SP + I + S G +
Sbjct: 186 FVDESGAKDRRVKRLAIMDQDGAN-VTYLTRGDALVLTPRFSPTSQEITYMSYAQGEPRV 244
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
++++ E G+ + P +SPDG+ + + + G+ ++++
Sbjct: 245 FLLNIETGQ---REIVGNFPGMSFAPRFSPDGQRVIMSLQQ----GGNANIFVMDLRSKA 297
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + A P +SPDG+ I F SD GG S +I+ + DGS
Sbjct: 298 TTRLTDTPAIDTA--PCYSPDGRQICFESDRGGSS--------------QIYVMNADGSG 341
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ + TP W PR
Sbjct: 342 QRRISFGNARYNTPVWSPR 360
>gi|268316197|ref|YP_003289916.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein
[Rhodothermus marinus DSM 4252]
gi|262333731|gb|ACY47528.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus
marinus DSM 4252]
Length = 1028
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 129/305 (42%), Gaps = 77/305 (25%)
Query: 372 HLNPFISPDSSRVGYHKCRGGSTRE----DGNNQLLLENIKSPL--PDISLFRFDGSFPS 425
+L P +SPD V + R T + D +L + S P RF S S
Sbjct: 297 NLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSGS 356
Query: 426 FSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
+SP G R AF+ F + G+N +W+ +R+ +
Sbjct: 357 WSPDGQRFAFITF-------AQGNNE---------IAIWN-LRKGKL------------- 386
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
E I V+GV A+ L + SPDG+ I F G +LY++D E
Sbjct: 387 ERRIA------VEGVGAIHNL----------AWSPDGRTIAFSGLSGGISDLYLLDLETN 430
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-------GSFEMYLIHPNGTGL 598
+ + +LT+ ++D WSPDG IAF SDR G+ G + L+ TG
Sbjct: 431 Q---VRKLTDDRYADLQPAWSPDGRTIAFVSDRGPDGTDFEILRYGHERLALLDLE-TGK 486
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
++++ G+ +P FSPDG+S+ F S++ G + +I+++ L+ +
Sbjct: 487 VRVLRPFRNGQQINPQFSPDGRSLYFISNHDG--------------FKDIYRMDLNTGAV 532
Query: 659 KRLTQ 663
R+T+
Sbjct: 533 YRITR 537
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEG---PWSDTM--- 562
G+ N P++SPDG+++ F S R + +L++ DAE G+ L RL+ P D +
Sbjct: 294 GEINLAPALSPDGRYVAFLSERDLFTIDLFVADAETGK--VLRRLSSSASDPHFDAIRFI 351
Query: 563 ---CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
+WSPDG+ AF + G+ E+ + + L + I G ++ +SPDG
Sbjct: 352 NSSGSWSPDGQRFAFITF----AQGNNEIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDG 407
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++I F+ GGIS +++ + L+ + +++LT + + D PAW P
Sbjct: 408 RTIAFSGLSGGIS--------------DLYLLDLETNQVRKLTDDRYADLQPAWSP 449
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 45/301 (14%)
Query: 286 SEEDDWISVYK-VILPQTGLVSTESVSIQRVTPPGLHA----FTPATSPGNNKFIAVATR 340
S +WI K LP + + ++V P L A PA SP + +++A +
Sbjct: 256 SLSKEWIQAVKNTYLPLLKDRTPPEQAGRKVLAPDLDAGEINLAPALSP-DGRYVAFLSE 314
Query: 341 RPTSSYRHIELFDLVKNKFIELTRFVSPKTH-HLNP--FI------SPDSSRVGYHKCRG 391
R + I+LF L R S + H + FI SPD R +
Sbjct: 315 RDLFT---IDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSGSWSPDGQRFAF----- 366
Query: 392 GSTREDGNNQLLLENI-KSPLPDISLFRFDGSFP--SFSPKGDRIAFVEFPG----VYVV 444
T GNN++ + N+ K L G+ ++SP G IAF G +Y++
Sbjct: 367 -ITFAQGNNEIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDGRTIAFSGLSGGISDLYLL 425
Query: 445 NSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSG-GPEFASESSEVDIISIN------VD 495
+ + + R++ W P + + S GP+ ++ +I+ +D
Sbjct: 426 DLETNQVRKLTDDRYADLQPAWSPDGRTIAFVSDRGPD----GTDFEILRYGHERLALLD 481
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
G V R NG+ P SPDG+ + F S G+K++Y MD G Y + RL
Sbjct: 482 LETGKVRVLRPFRNGQQIN-PQFSPDGRSLYFISNHDGFKDIYRMDLNTGAVYRITRLQT 540
Query: 556 G 556
G
Sbjct: 541 G 541
>gi|334345681|ref|YP_004554233.1| protein tolB [Sphingobium chlorophenolicum L-1]
gi|334102303|gb|AEG49727.1| Protein tolB [Sphingobium chlorophenolicum L-1]
Length = 449
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 49/285 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG N + N +S I+L P FSP I +V + +Y+ + +R
Sbjct: 205 DGANHRFITNGQS----IALT------PRFSPDYKSIVYVSYLNNRVRIYIYDIGTGKQR 254
Query: 453 QVYFKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V N F+ W P ++++ + + D+ ++ A +RLTT
Sbjct: 255 LVTESNNATFAPRWSPDGRNILFS------MAVAGNTDVYRVSATG----GAPQRLTTAP 304
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ S SPDG+ IVF S R+G + +Y+M+A+G G R++ G WSP G+
Sbjct: 305 GIDVGGSYSPDGRQIVFESDRSGSQQVYVMNADGS---GQRRISHGGGRYATPEWSPRGD 361
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IAF SG F++ ++ P+G R L + + P +SP+G+ + F
Sbjct: 362 LIAFTKI-----SGDFKIAVMTPSGDNERILT---NGWQDEQPSWSPNGRVLQFFR---- 409
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+TP + + +++++ L G + +R+ PAWGP
Sbjct: 410 ------TTPGR-EGSSQVWQVDLTGVNERRIP-TPLSGSDPAWGP 446
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ A P SPD K IV+ S +YI D G G
Sbjct: 199 LAIMDSDG--ANHRFITNGQSIALTPRFSPDYKSIVYVSYLNNRVRIYIYDI----GTGK 252
Query: 551 HRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL TE + WSPDG I F+ +G+ ++Y + G ++L + G
Sbjct: 253 QRLVTESNNATFAPRWSPDGRNILFSMAV----AGNTDVYRVSATGGAPQRLTTA--PGI 306
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG+ IVF SD G +++ + DGS +R++
Sbjct: 307 DVGGSYSPDGRQIVFESDRSGSQ--------------QVYVMNADGSGQRRISHGGGRYA 352
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 353 TPEWSPR 359
>gi|312171769|emb|CBX80027.1| Protein tolB precursor [Erwinia amylovora ATCC BAA-2158]
Length = 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 276 GSGQ---IRQVTDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 329 WEGAQNQDAD--VSADGKSMVMISTNSGAQ--------------HVARQDLVTGAVQKLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV ST W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQVTDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T G N VS DGK +V ST +G +++ D G
Sbjct: 311 RPQIYKIGVNG----GTAQRITWEGAQNQDADVSADGKSMVMISTNSGAQHVARQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQKLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|269959053|ref|YP_003328842.1| translocation protein [Anaplasma centrale str. Israel]
gi|269848884|gb|ACZ49528.1| translocation protein [Anaplasma centrale str. Israel]
Length = 441
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT N N S SPD K IVF S R+G LY+M+A+G R++ G +
Sbjct: 286 RLTNNKSINTSASYSPDKKSIVFNSDRSGRPQLYVMNADGTN---QRRISSGKGGYSAPV 342
Query: 565 WSPDGEWIAFA-SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSP G+WIAF +D N F + ++ P+G+G R L + + P +SP+G+ I+
Sbjct: 343 WSPRGDWIAFTKADGKN-----FHIGVMKPDGSGERLLAK---GHMVDSPSWSPNGRVIL 394
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
FT +P S H ++ + + + G++ + L
Sbjct: 395 FTQQ------DPPSATHPFRS--RLVTVDITGTNTQTL 424
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + V +T+ G+ + P SPD + +V+ S ++ + D E G L
Sbjct: 186 IAIMDQDGANNVY-ITSTGEFVSTPRFSPDARSLVYMSYAKSSGSIVLHDLETGYSTALG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ ++ +SPDG+ + + G+ +Y I +L + S +
Sbjct: 245 GVRG---VNSSPRFSPDGKHVLLSES----AQGATNIYSIDLKSGKSTRLTNNKSINTS- 296
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+SPD KSIVF SD G +P +++ + DG++ +R++ P
Sbjct: 297 -ASYSPDKKSIVFNSDRSG------------RP--QLYVMNADGTNQRRISSGKGGYSAP 341
Query: 672 AWGPR 676
W PR
Sbjct: 342 VWSPR 346
>gi|397689934|ref|YP_006527188.1| WD40-like Beta Propeller [Melioribacter roseus P3M]
gi|395811426|gb|AFN74175.1| WD40-like Beta Propeller [Melioribacter roseus P3M]
Length = 346
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 127/280 (45%), Gaps = 45/280 (16%)
Query: 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF 419
I R +T +P SPD S++ + + + N+ ++L +I + I
Sbjct: 67 ISQKRLTFNQTWDFDPVYSPDGSKIAFT-----AYSSESNSNIILYDIAAKTQKI---LS 118
Query: 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR----------RQVYFKNAFSTVWDPVRE 469
+G P +S G +IAF++ + +VNSDGSN+ R V F D R
Sbjct: 119 EGREPVYSRDGSKIAFLDGESIGIVNSDGSNKVILDLPEGKPRSVNFS------PDGARL 172
Query: 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
V +G ASE I S+N++ D + ++T + + SPDG +V +
Sbjct: 173 IFVLQNGN---ASE-----IYSVNINGSD----LNKITETEDYEVYCNYSPDGSRVVSVA 220
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
++IM+++G L E W++ ++PDG I F S+R+ G E++
Sbjct: 221 YTNTVAQIFIMNSDGSNRIRLTNTEE--WNNKPL-FTPDGGEIIFVSNRN----GRSEIF 273
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+++ +G+ R+L+ + A+ P S DGK + T D G
Sbjct: 274 VMNSDGSNQRQLVS--FSDFADDPVISSDGKIVAVTVDNG 311
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 40/247 (16%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFA 481
P +SP G +IAF + S SN + + A T + RE V Y+ G + A
Sbjct: 82 PVYSPDGSKIAFTAY-------SSESNSNIILYDIAAKTQKILSEGREPV-YSRDGSKIA 133
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
E SI + + DG + V GK + + SPDG ++F +Y ++
Sbjct: 134 FLDGE----SIGIVNSDGSNKVILDLPEGKPRSV-NFSPDGARLIFVLQNGNASEIYSVN 188
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
G + L+++TE + CN+SPDG + + + ++++++ +G+ +L
Sbjct: 189 INGSD---LNKITETEDYEVYCNYSPDGSRVVSVAYTNTVA----QIFIMNSDGSNRIRL 241
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + N P F+PDG I+F S+ G S EIF + DGS+ ++L
Sbjct: 242 --TNTEEWNNKPLFTPDGGEIIFVSNRNGRS--------------EIFVMNSDGSNQRQL 285
Query: 662 TQNSFED 668
SF D
Sbjct: 286 V--SFSD 290
>gi|373458688|ref|ZP_09550455.1| peptidase S41 [Caldithrix abyssi DSM 13497]
gi|371720352|gb|EHO42123.1| peptidase S41 [Caldithrix abyssi DSM 13497]
Length = 1087
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 22/155 (14%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
VV+ +GG DI N++D + RLT + FP SPDG I F
Sbjct: 39 VVFVAGG----------DIWKANINDGQAI----RLTMHDGEETFPKFSPDGSMIAFTGE 84
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
G ++Y+M+A+G + + R+T P D + W P I F S+R + S +++
Sbjct: 85 YDGNSDVYVMNADGSQ---IRRVTFHPGGDLVVGWHPTKNKIIFRSNRLSYQRFS-RLFM 140
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
I P+G+GL LI +A + FSPDG+ I +
Sbjct: 141 IKPDGSGLETLIMHEAAQGS----FSPDGQKIAYN 171
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 37/209 (17%)
Query: 414 ISLFRFDG--SFPSFSPKGDRIAFV-EFPG---VYVVNSDGSNRRQVYFKNAFSTV--WD 465
I L DG +FP FSP G IAF E+ G VYV+N+DGS R+V F V W
Sbjct: 58 IRLTMHDGEETFPKFSPDGSMIAFTGEYDGNSDVYVMNADGSQIRRVTFHPGGDLVVGWH 117
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +++ S + S + I D + + G S SPDG+ I
Sbjct: 118 PTKNKIIFRSNRLSYQRFSR---LFMIKPDGSGLETLIMHEAAQG------SFSPDGQKI 168
Query: 526 VF----RSTRTGYK-------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
+ R RT + +LYI D E + ++T+ P +D + W G I F
Sbjct: 169 AYNRLSREFRTWKRYFGGTAQDLYIFDFEQMKD---EKITDFPGTDRLPMWI--GNEIYF 223
Query: 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
+SDRD G +Y + +R++ +
Sbjct: 224 SSDRD----GVLNIYALDVETKKVRQITR 248
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG+WIA+ SD D G +++Y++ P G + + G + +SPD K + F
Sbjct: 353 WSPDGKWIAYFSDAD----GEYQLYVMDPFGESTPQQLTHFKNGYRHTIRWSPDSKKLAF 408
Query: 625 T 625
T
Sbjct: 409 T 409
>gi|404251971|ref|ZP_10955939.1| translocation protein TolB [Sphingomonas sp. PAMC 26621]
Length = 473
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N ++ I+L P SP I ++ + P +YV + S R
Sbjct: 228 QDGENHRFLTNGQA----IALT------PRLSPDQRSIVYMSYLNDRPAIYVYDL-ASGR 276
Query: 452 RQVYFKN---AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+++ N F+ P V+++ + + DI + + +RLT
Sbjct: 277 QKLLVANNDLTFAPRVSPDSRWVLFS------MARAGNTDIYRVPLSG----GTPQRLTQ 326
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ + + SPDG I F S R+G + LY+M+A+G + R++ G WSP
Sbjct: 327 STAIDTGGTYSPDGSRIAFESDRSGTQQLYVMNADGSQ---QQRISFGSGRYATPVWSPR 383
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ IA+ GSF + ++ P G G KL+ GS + P +SP+G+ ++F
Sbjct: 384 GDLIAYTKI-----GGSFRIGVMSPAG-GNEKLLTDGS--QDEGPSWSPNGRVLMFFRST 435
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT-PAWGPRFIRP 680
GG S + +++ + L G +++R+ + DG+ PAWGP +RP
Sbjct: 436 GGGSGK-----------ADLWSVDLTGVNVRRVP--TVLDGSDPAWGP--LRP 473
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 322 AFTPATSPGNNKFIAVA--TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP 379
A TP SP + ++ RP I ++DL + L V+ P +SP
Sbjct: 243 ALTPRLSPDQRSIVYMSYLNDRPA-----IYVYDLASGRQKLL---VANNDLTFAPRVSP 294
Query: 380 DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP-----SFSPKGDRIA 434
DS V + R G+T + + PL + R S ++SP G RIA
Sbjct: 295 DSRWVLFSMARAGNT----------DIYRVPLSGGTPQRLTQSTAIDTGGTYSPDGSRIA 344
Query: 435 FVE----FPGVYVVNSDGSNRRQVYFKNA-FST-VWDPVREAVVYTSGGPEFASESSEVD 488
F +YV+N+DGS ++++ F + ++T VW P + + YT G F +
Sbjct: 345 FESDRSGTQQLYVMNADGSQQQRISFGSGRYATPVWSPRGDLIAYTKIGGSF-----RIG 399
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV-FRST--RTGYKNLYIMDAEG 544
++S +L T+G + PS SP+G+ ++ FRST +G +L+ +D G
Sbjct: 400 VMSP-------AGGNEKLLTDGSQDEGPSWSPNGRVLMFFRSTGGGSGKADLWSVDLTG 451
>gi|451980993|ref|ZP_21929373.1| putative Protein tolB [Nitrospina gracilis 3/211]
gi|451761756|emb|CCQ90620.1| putative Protein tolB [Nitrospina gracilis 3/211]
Length = 449
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTS----------------------- 475
+Y V+ DG N +Q+ + + S W P R +V+TS
Sbjct: 187 LYAVDFDGENLKQISDEQSVVLSPNWSPDRRTIVFTSYRDRNPNMVLMSTNGEKRRTLLD 246
Query: 476 -----GGPEFASESSEVDIISINVDDVDGV------SAVRRLTTNGKNNAFPSVSPDGKW 524
P ++ + S + +S++ D+ + + + RLT + + P+ SPDGK
Sbjct: 247 IPGLNSAPSWSPDGSRI-ALSLSKDENSEIYTLSRWNELTRLTRHFNIDTSPTWSPDGKR 305
Query: 525 IVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
I F S R G +YIMDAE G+ G+ R+T W + WSPDG+ IA+ S
Sbjct: 306 IAFTSDRAGAGRPQIYIMDAEDGDQQGVRRITFDSWYNDNPAWSPDGDKIAYTSR----- 360
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
G + + TG L G + + P +SPDG+ + + +G S+
Sbjct: 361 VGDYHQIRLFFPETGKTALFTQGPSNK-EEPSWSPDGRFLAYRVAHGRYSS 410
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 89/265 (33%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN--- 374
PGL++ P+ SP ++ IA++ + +S E++ L +++ ELTR T H N
Sbjct: 248 PGLNS-APSWSPDGSR-IALSLSKDENS----EIYTL--SRWNELTRL----TRHFNIDT 295
Query: 375 -PFISPDSSRVGYHKCRGGSTR--------EDGNNQLLLENIKSPLPDISLFRFDGSF-- 423
P SPD R+ + R G+ R EDG+ Q + FD +
Sbjct: 296 SPTWSPDGKRIAFTSDRAGAGRPQIYIMDAEDGDQQ-----------GVRRITFDSWYND 344
Query: 424 -PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
P++SP GD+IA+ G Y ++ +++F PE
Sbjct: 345 NPAWSPDGDKIAYTSRVGDY-------HQIRLFF---------------------PE--- 373
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
G +A+ T N PS SPDG+++ +R Y +++I
Sbjct: 374 ---------------TGKTAL--FTQGPSNKEEPSWSPDGRFLAYRVAHGRYSSIHIKGF 416
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSP 567
G L L +G +S T WSP
Sbjct: 417 NGKPSRQLTHLPQGSYSPT---WSP 438
>gi|452751319|ref|ZP_21951065.1| TolB protein precursor [alpha proteobacterium JLT2015]
gi|451961469|gb|EMD83879.1| TolB protein precursor [alpha proteobacterium JLT2015]
Length = 1121
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 44/259 (16%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVY------FKNAFSTV-------WDP 466
P+ SP G +IAFV +Y+ + + R++Y + ++ W P
Sbjct: 303 PTPSPDGSKIAFVRRENTQSKLYIKDLETGTERKIYDDLDRDVQETWAVTGVYPNMDWMP 362
Query: 467 VREAVVYTSGGP--EFASESSEVDIISINVDDVDGVSA-------VRRLTTNGKNNAFPS 517
E++V+ +GG ++ S +I +DD G+SA V + N F
Sbjct: 363 DSESIVFWAGGKIHRIDADGSNEAVIPFAIDDTRGMSAAPHPKIEVGEPSVNVTMPRFAE 422
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFAS 576
VSPD + +VF S LY M A GG RLT M +WS DG+ I F
Sbjct: 423 VSPDSRTVVFES----LGKLYTMPAGGGT---PKRLTSSDGGREMYPSWSRDGKRIVFVR 475
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
D+ G E++ + P G RK+ + G P FSPDG +IVF GG P
Sbjct: 476 WTDD---GLGEIHTVSPGGGNDRKV--TAQPGHFARPVFSPDGDTIVFERREGGYLTAP- 529
Query: 637 STPHQYQPYGEIFKIKLDG 655
QY ++K+ +G
Sbjct: 530 ----QYSDNPGVYKVSAEG 544
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
R EG W D + SPDG +AF D +Y + G G I G A
Sbjct: 98 RTDEGTWMD--VDVSPDGRTVAFTLLGD--------IYTMPITG-GTPTRIAEGLAWEV- 145
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE-DGT 670
HP FSPDG I FTSD GG I+ + +GSD +++T+ F
Sbjct: 146 HPRFSPDGTRIAFTSDRGGGD--------------NIWVMNANGSDKRQVTKEDFRLLNQ 191
Query: 671 PAWGP--RFI 678
P W P RFI
Sbjct: 192 PTWSPDGRFI 201
>gi|390957846|ref|YP_006421603.1| periplasmic component of the Tol biopolymer transport system
[Terriglobus roseus DSM 18391]
gi|390958187|ref|YP_006421944.1| periplasmic component of the Tol biopolymer transport system
[Terriglobus roseus DSM 18391]
gi|390412764|gb|AFL88268.1| periplasmic component of the Tol biopolymer transport system
[Terriglobus roseus DSM 18391]
gi|390413105|gb|AFL88609.1| periplasmic component of the Tol biopolymer transport system
[Terriglobus roseus DSM 18391]
Length = 445
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 36/256 (14%)
Query: 386 YHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP 439
Y+ GG ++E DG N + N+ + IS+ P SP R+AF
Sbjct: 183 YYVHAGGGSKEIWAMDYDGANAHAVTNLGT----ISIS------PRVSPDNSRVAFSSLG 232
Query: 440 --GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
G + R V F ++ T P A + A SS I V D
Sbjct: 233 KYGFQIRVFSLLLNRMVSFPDSSGTNLSPAWSA------NGQLAYSSSRSGDPEIYVSDG 286
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
G SA RR+T + + P+ +P G + + S RTG +YIMD +G G+ R+T+
Sbjct: 287 SGNSA-RRITNSRGPDVSPTWNPKTGSQLAWISGRTGLPQVYIMDTDGA---GVQRMTDT 342
Query: 557 PWSDTMCNWSPDGEWIAFASDRD-NPGS-GSFEMYLIHPNGTGLRKLIQ-SGSAGRANHP 613
++ T +WSP+G+++AFA DR PG+ G ++YL+ +K IQ + GR + P
Sbjct: 343 GYA-TSVSWSPNGQFLAFAWDRKYGPGAPGGQDIYLMD---VASKKWIQLTNGIGRCDFP 398
Query: 614 YFSPDGKSIVFTSDYG 629
+SPDG+ IVF G
Sbjct: 399 SWSPDGRHIVFAVGSG 414
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 111/268 (41%), Gaps = 33/268 (12%)
Query: 308 ESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367
+ + VT G + +P SP N++ VA I +F L+ N+ + F
Sbjct: 200 DGANAHAVTNLGTISISPRVSPDNSR---VAFSSLGKYGFQIRVFSLLLNRMVS---FPD 253
Query: 368 PKTHHLNPFISPDSSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFP 424
+L+P S + ++ Y R G DG+ S PD+S P
Sbjct: 254 SSGTNLSPAWSANG-QLAYSSSRSGDPEIYVSDGSGNSARRITNSRGPDVS--------P 304
Query: 425 SFSPK-GDRIAFVE----FPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGP 478
+++PK G ++A++ P VY++++DG+ +R A S W P + + +
Sbjct: 305 TWNPKTGSQLAWISGRTGLPQVYIMDTDGAGVQRMTDTGYATSVSWSPNGQFLAFAWDRK 364
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
DI ++V + +LT FPS SPDG+ IVF ++
Sbjct: 365 YGPGAPGGQDIYLMDVASKKWI----QLTNGIGRCDFPSWSPDGRHIVFAVGSGARAEVW 420
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
M A +G G H+L G SD M NWS
Sbjct: 421 TMLA---DGTGKHKLA-GTGSD-MPNWS 443
>gi|337285743|ref|YP_004625216.1| TolB domain-containing protein [Thermodesulfatator indicus DSM
15286]
gi|335358571|gb|AEH44252.1| TolB domain-containing protein [Thermodesulfatator indicus DSM
15286]
Length = 410
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P SP G ++AFV + + V++ RR + Y S W P + +V T
Sbjct: 190 PKLSPDGRQVAFVYYENHRSSIQVIDLATGKRRIICQYPGLNASPAWHPDGKKLVVT--- 246
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +D+ I D++G ++RLT N S SPDGK++ F S RTG +
Sbjct: 247 ---LSKDGTIDLYLI---DLNG-KILKRLTHGEGINTGASFSPDGKYLAFVSDRTGPPQI 299
Query: 538 YIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
YIMD G+ RLT EG + +T +WSP G+ I +AS + G F ++ I P G
Sbjct: 300 YIMDL---ATRGVRRLTFEGSY-NTSPDWSPTGDRIVYASLK----GGVFSLFTIDPEGG 351
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIV 623
++ + A P F+P+G+ I+
Sbjct: 352 EPVQITDGAKSFEA--PCFAPNGRLIL 376
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 493 NVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
++ +D + RR+ NA P+ PDGK +V ++ G +LY++D G L
Sbjct: 210 SIQVIDLATGKRRIICQYPGLNASPAWHPDGKKLVVTLSKDGTIDLYLIDLNGKI---LK 266
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
RLT G +T ++SPDG+++AF SDR P ++Y++ G+R+L GS +
Sbjct: 267 RLTHGEGINTGASFSPDGKYLAFVSDRTGPP----QIYIMDLATRGVRRLTFEGSYNTS- 321
Query: 612 HPYFSPDGKSIVFTSDYGGI 631
P +SP G IV+ S GG+
Sbjct: 322 -PDWSPTGDRIVYASLKGGV 340
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
++ V D DG + V L+ G+ P +SPDG+ + F ++ ++D G+
Sbjct: 167 TLYVQDFDGHNPVPLLS--GELILSPKLSPDGRQVAFVYYENHRSSIQVIDLATGKR--- 221
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ + P + W PDG+ + +D G+ ++YLI NG L++L G
Sbjct: 222 RIICQYPGLNASPAWHPDGKKLVVTLSKD----GTIDLYLIDLNGKILKRLTHG--EGIN 275
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
FSPDGK + F SD G P Q I+ + L ++RLT + +
Sbjct: 276 TGASFSPDGKYLAFVSDRTG--------PPQ------IYIMDLATRGVRRLTFEGSYNTS 321
Query: 671 PAWGP 675
P W P
Sbjct: 322 PDWSP 326
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
VRRLT G N P SP G IV+ S + G +L+ +D EGGE ++T+G S
Sbjct: 308 GVRRLTFEGSYNTSPDWSPTGDRIVYASLKGGVFSLFTIDPEGGEPV---QITDGAKSFE 364
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
++P+G I A +D +YL NG
Sbjct: 365 APCFAPNGRLI-LAQGKDG-------LYLFLVNGAA 392
>gi|410694630|ref|YP_003625252.1| putative Protein tolB precursor [Thiomonas sp. 3As]
gi|294341055|emb|CAZ89450.1| putative Protein tolB precursor [Thiomonas sp. 3As]
Length = 438
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 119/282 (42%), Gaps = 59/282 (20%)
Query: 432 RIAFVEFPGVY-----VVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSGGPEFASE 483
RI ++ G + + +SDG+N Q ++ S VW P G E A
Sbjct: 173 RITYITKAGQHNFSLNIADSDGANP-QFALRSREPLLSPVWSP---------NGQELAYV 222
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S E + + DV S RR N K +N+ P+ SPDG + T TG +Y+M +
Sbjct: 223 SFETGKPVVFMQDVR--SGARRAVANFKGSNSAPAFSPDGGTLAVVLTLTGRSQIYLMPS 280
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+GG L R DT +SPDG+ + F SDRD G ++Y + NG ++++
Sbjct: 281 KGGTPRQLMRSYS---IDTEPTFSPDGQSLYFVSDRD----GGPQVYKVGLNGGSVQRIT 333
Query: 603 QSGSAGRANHPYFSPDGKSIVFTS---------------------DYGGISAEPISTPH- 640
SG G P SPDGK++ + S D G P P+
Sbjct: 334 YSG--GYNVSPAISPDGKTLAYISQQGNSYQLWSINLATNATQLLDDGSDCGHPSFAPNG 391
Query: 641 QYQPY------GEIFK-IKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Y GE+ K + +DG L+Q + P+WGP
Sbjct: 392 QIVLYSAGGRGGEVLKTVSIDGRVRSTLSQAGVQVREPSWGP 433
>gi|296136886|ref|YP_003644128.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Thiomonas intermedia K12]
gi|295797008|gb|ADG31798.1| Tol-Pal system beta propeller repeat protein TolB [Thiomonas
intermedia K12]
Length = 438
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 119/282 (42%), Gaps = 59/282 (20%)
Query: 432 RIAFVEFPGVY-----VVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSGGPEFASE 483
RI ++ G + + +SDG+N Q ++ S VW P G E A
Sbjct: 173 RITYITKAGQHNFSLNIADSDGANP-QFALRSREPLLSPVWSP---------NGQELAYV 222
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S E + + DV S RR N K +N+ P+ SPDG + T TG +Y+M +
Sbjct: 223 SFETGKPVVFMQDVR--SGARRAVANFKGSNSAPAFSPDGGTLAVVLTLTGRSQIYLMPS 280
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+GG L R DT +SPDG+ + F SDRD G ++Y + NG ++++
Sbjct: 281 KGGTPRQLMRSYS---IDTEPTFSPDGQSLYFVSDRD----GGPQVYKVGLNGGSVQRIT 333
Query: 603 QSGSAGRANHPYFSPDGKSIVFTS---------------------DYGGISAEPISTPH- 640
SG G P SPDGK++ + S D G P P+
Sbjct: 334 YSG--GYNVSPAISPDGKTLAYISQQGNSYQLWSINLATNATQLLDDGSDCGHPSFAPNG 391
Query: 641 QYQPY------GEIFK-IKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Y GE+ K + +DG L+Q + P+WGP
Sbjct: 392 QIVLYSAGGRGGEVLKTVSIDGRVRSTLSQAGVQVREPSWGP 433
>gi|325981318|ref|YP_004293720.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Nitrosomonas sp. AL212]
gi|325530837|gb|ADZ25558.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosomonas sp.
AL212]
Length = 432
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G+++A+V F P VYV RR V FK + S W P + AVV T
Sbjct: 201 PAWSPDGNQLAYVSFENKKPVVYVQTLSTRERRAVANFKGSNSAPAWSPDGKKLAVVLTG 260
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I +N D S ++RL+ + + PS SPDG++++F S R G
Sbjct: 261 QGGS--------QIFLVNTDG----SGLQRLSRSSGIDTEPSFSPDGRYLLFTSDRGGSP 308
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M E RLT EG + + ++S D + F +N + +
Sbjct: 309 QIYRMPVTAAESSNAERLTFEGSY-NVSPDYSHDNKSFTFIHRNNN-------QFNVAVQ 360
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G R++ ++ P F+P+GK I++ ++ G +G + + D
Sbjct: 361 EIGSRQIEILTNSKFDESPSFAPNGKMILYATEING--------------HGILSAVSRD 406
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G ++L+ + + PAWGP
Sbjct: 407 GQTRQQLSVQAGDIREPAWGP 427
>gi|408418806|ref|YP_006760220.1| tol-pal system, periplasmic component TolB [Desulfobacula toluolica
Tol2]
gi|405106019|emb|CCK79516.1| TolB: tol-pal system, periplasmic component [Desulfobacula
toluolica Tol2]
Length = 453
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 37/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA-FSTVWDPVREAVVYTSGGP 478
PS+S G +A+V + P +++ N + + V +K S W P + + S
Sbjct: 229 PSWSFDGKWLAYVSYAKGKPDIFIKNFNENKGAIVNYKGMNISPDWMPGQLKL---SAAL 285
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
F+ + E+ ++++ + ++R+T + + P SPDG+ IVF S R G +Y
Sbjct: 286 SFSGDQ-EIYLLTLTGE------IIKRITKSWGIDVSPKFSPDGQKIVFTSKRAGTPQIY 338
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
I D E GE + RLT ++T WSPDG+ IA+ + +DN ++++ + TG+
Sbjct: 339 IKDIESGE---VRRLTFKGLNNTSPAWSPDGKKIAYVNIKDN----HINIFILDID-TGM 390
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+ + + G P +SPDG I FT ST P IF + GSD
Sbjct: 391 PVQL-TMNTGDNEDPAWSPDGSMITFT-----------STRENGVP--RIFVMNASGSDQ 436
Query: 659 KRLTQNSFEDGTPAW 673
+RL S + P W
Sbjct: 437 RRLLSLSGKQTQPDW 451
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 478 PEFASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
P+F+ + ++ S I + D++ VRRLT G NN P+ SPDGK I + +
Sbjct: 316 PKFSPDGQKIVFTSKRAGTPQIYIKDIES-GEVRRLTFKGLNNTSPAWSPDGKKIAYVNI 374
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+ + N++I+D + G +LT + WSPDG I F S R+N G +++
Sbjct: 375 KDNHINIFILDIDTGMPV---QLTMNTGDNEDPAWSPDGSMITFTSTREN---GVPRIFV 428
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFS 616
++ +G+ R+L+ +G+ P +S
Sbjct: 429 MNASGSDQRRLLS--LSGKQTQPDWS 452
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D DG V+++T + PS S DGKW+ + S G +++I + +G ++
Sbjct: 210 DFDG-QNVKQMTFHKSICLSPSWSFDGKWLAYVSYAKGKPDIFIKNFNENKGAIVNYKGM 268
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
D M ++F+ D+ E+YL+ G ++++ + S G P F
Sbjct: 269 NISPDWMPGQLKLSAALSFSGDQ--------EIYLLTLTGEIIKRITK--SWGIDVSPKF 318
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDG+ IVFTS G TP +I+ ++ +++RLT + +PAW P
Sbjct: 319 SPDGQKIVFTSKRAG-------TP-------QIYIKDIESGEVRRLTFKGLNNTSPAWSP 364
>gi|393776227|ref|ZP_10364523.1| translocation protein tolb [Ralstonia sp. PBA]
gi|392716616|gb|EIZ04194.1| translocation protein tolb [Ralstonia sp. PBA]
Length = 429
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 55/297 (18%)
Query: 394 TREDGNNQLLLEN---------IKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PG 440
+R G QLL+ + + SP P IS P++SP G ++A+V F P
Sbjct: 170 SRVGGRYQLLISDSDGANSVAALSSPEPIIS--------PTWSPDGTKVAYVSFESKKPV 221
Query: 441 VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
VYV + R V + ++ W P + + S I IN+D
Sbjct: 222 VYVHDLASGKRTLVSNQKGNNSAPSWSPDGRKLAVS------LSRDGNTQIYLINIDG-- 273
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
+ +RRLT + P SPDGK I F S R G +Y M EG + R+T
Sbjct: 274 --TGLRRLTQGSAIDTEPQFSPDGKTIYFTSDRGGAPQIYRMPVEGEQAARAQRVTFKGN 331
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
+ SPDG+ +A+ S G F++++ + L + + P F+ +
Sbjct: 332 YNVSPRISPDGKLLAYISR-----GGGFKLHVQDLTNGDVTALTDTSN---DEAPSFAAN 383
Query: 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GK I++ + GG + + + +DG + + L+ S + PAWGP
Sbjct: 384 GKYILYATRAGGRAV--------------LAAVSVDGRNRQILSLQSGDVREPAWGP 426
>gi|389743571|gb|EIM84755.1| tricorn protease N-terminal domain-containing protein [Stereum
hirsutum FP-91666 SS1]
Length = 671
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 134/618 (21%), Positives = 223/618 (36%), Gaps = 94/618 (15%)
Query: 104 PPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNG 163
P +I+ +ERNG N D R T LEQ A + + NG
Sbjct: 99 PDGQWIIFTSERNGDGNP-------DLWRVHPDGTGLEQVIATSAVETAASV----SPNG 147
Query: 164 GVISMKDKPI--LSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSP 221
+++ + + S +L+ ++T +SW +TE+ + P G F P
Sbjct: 148 TIVAFQSTAVNYKSNIWLLDLTTG-------SSWNITNTTEIAGNSS---LPDG--HFRP 195
Query: 222 AVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWV-- 275
A SP G++ +S + W +G + ++ I+ R +V N C
Sbjct: 196 AWSPDGEWIVFSSDKDTLWRGHGNGSGWEHTQELSIYAIRPNGSDYHLVANKTGYCLGSP 255
Query: 276 ----DESTLFFHRKSEEDDWISVY--KVILPQTGLVSTESVS----IQRVTPPGLHAFTP 325
D S + ++ + ED W + V + + +VS + + ++ + G+ F
Sbjct: 256 KFSPDSSRVVYYEITTEDTWGARRPEDVDITSSQIVSVDFATGGDRLEHTSDVGVKLFPQ 315
Query: 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385
F+ + F T + + +P SPD ++V
Sbjct: 316 YLDANTIGFLHKTNGTDAQGLNYTSAF------VNGTTNLTAVEITARSPAWSPDGTQVV 369
Query: 386 YHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS------------------ 427
Y K R + + D +RF FP+ S
Sbjct: 370 YEKTEWSPIRAQ-------DKVIYSWDDNWEYRFSDVFPTLSLQGQLAITQKQLGNASIV 422
Query: 428 ---PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASES 484
P GD +A + F + S Q AF W E + + G F
Sbjct: 423 TMQPSGDDLALI-FDTYQTGQIENSVSLQG-LAGAFQPDWTTDGEWLAFGLGNWFFERSV 480
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS--TRTGYKNLYIMDA 542
+ + + S LT N+ FPS SPDG +V+RS + G + L IMD
Sbjct: 481 GTAWLYRVTANG----SVYEELTDGTYNDGFPSYSPDGSKLVYRSWDVQNGPRGLRIMDL 536
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE----MYLIHPNGTGL 598
E + LT G W D + +W P G+ I F P +E + I+ +GT
Sbjct: 537 ET---RNITTLTTG-W-DNLPHWQPGGDLILFTRRTSVPNENEYEDNYDVCTINSDGTNY 591
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+ L + S H ++ DG I++++ G E +Q YG+I + DG++
Sbjct: 592 KVL--TTSLANDAHAVWNGDGTKILYSTGEFGFQDEAAIYDDTFQQYGQIMSMDYDGANK 649
Query: 659 KRLTQNSFEDGTPAWGPR 676
LT +ED P + P
Sbjct: 650 VVLTNGIWEDSMPLYVPN 667
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 40/210 (19%)
Query: 441 VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTS-----GGPEFASESSEVDIISI 492
+Y+ N+DG+N + ++ + W P + +++TS G P+ V
Sbjct: 71 LYIANADGTNETLLLGNSSSFDYHAQWSPDGQWIIFTSERNGDGNPDLW----RVHPDGT 126
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLH 551
++ V SAV SVSP+G + F+ST YK N++++D G + +
Sbjct: 127 GLEQVIATSAVETAA---------SVSPNGTIVAFQSTAVNYKSNIWLLDLTTGSSWNIT 177
Query: 552 RLTEGPWSDTMCN------WSPDGEWIAFASDRDN----PGSGS-------FEMYLIHPN 594
TE + ++ + WSPDGEWI F+SD+D G+GS +Y I PN
Sbjct: 178 NTTEIAGNSSLPDGHFRPAWSPDGEWIVFSSDKDTLWRGHGNGSGWEHTQELSIYAIRPN 237
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
G+ L+ + + P FSPD +V+
Sbjct: 238 GSDYH-LVANKTGYCLGSPKFSPDSSRVVY 266
>gi|73540499|ref|YP_295019.1| translocation protein TolB [Ralstonia eutropha JMP134]
gi|119371052|sp|Q474K8.1|TOLB_CUPPJ RecName: Full=Protein TolB; Flags: Precursor
gi|72117912|gb|AAZ60175.1| TolB, N-terminal:WD40-like Beta Propeller [Ralstonia eutropha
JMP134]
Length = 450
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 39/289 (13%)
Query: 394 TREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEF----PGVYVVNSDG 448
+R G QLL+ + ++L + PS+SP G R+A+V F P VYV +
Sbjct: 191 SRVGGRYQLLISDSDGQNSQVALTSNEPIISPSWSPDGRRVAYVSFEAKKPVVYVHDLAT 250
Query: 449 SNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
R V + ++ W P + + S + +N D S +RRL
Sbjct: 251 GKRTLVSNQKGNNSAPSWSPDGQHLAVA------LSRDGNTQVYQVNADG----SGIRRL 300
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T + + P SPDGK I F S R G +Y M A G E R+T + S
Sbjct: 301 TRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAGGEEAGSAQRVTFKGSYNVSPRIS 360
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG+++A+ + SG F++ L + L + + P F+ +GK I++ +
Sbjct: 361 PDGKYLAYITR-----SGGFKLQLQDLTNGDVTSLTDTSN---DEAPSFAANGKYILYAT 412
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GG S + + DG + L+ S + P+WGP
Sbjct: 413 RVGGRSV--------------LAAVSTDGRTRQVLSLQSGDVREPSWGP 447
>gi|320354281|ref|YP_004195620.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032]
gi|320122783|gb|ADW18329.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 111/269 (41%), Gaps = 56/269 (20%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--------VWDPVREAV 471
P F+P G+ +A+ + +Y+ ++ RQ NA S + P +
Sbjct: 200 PRFTPDGNYLAYSTYHRGNQDLYI-----TDLRQNTATNALSRRNGLNLAPTFSPDGRTM 254
Query: 472 VYT---SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528
V T G P+ S + +II R+LT+ N S SPDG+ + F
Sbjct: 255 VVTLSKGGNPDLYSMDRQGNII-------------RQLTSGAGINVSASYSPDGQTLAFV 301
Query: 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
S R+G N+Y+M A GG+ RLT ++ WSP G+ IAF + G +++
Sbjct: 302 SDRSGKPNVYVMSAGGGQA---KRLTFKCPENSEPVWSPKGDEIAFTGLQ----GGIYQL 354
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+++ NG +R+L G G P +SPDG+ + T G S EI
Sbjct: 355 FVMDRNGGNVRQLSTGG--GNYESPTWSPDGRLLAVTRKSGSRS--------------EI 398
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
+ G D++ L P W R
Sbjct: 399 CVVSKSGKDVRSLFAMKGNQSYPQWSGRL 427
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 115/275 (41%), Gaps = 36/275 (13%)
Query: 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406
+ + + D++ ++TR + ++P +PD + + Y ST GN L + +
Sbjct: 175 KEVYISDILGRHPRQVTRH---RALCVSPRFTPDGNYLAY------STYHRGNQDLYITD 225
Query: 407 IKSPLPDISLFRFDGS--FPSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQVYFKNA 459
++ +L R +G P+FSP G R V P +Y ++ G+ RQ+
Sbjct: 226 LRQNTATNALSRRNGLNLAPTFSPDG-RTMVVTLSKGGNPDLYSMDRQGNIIRQL----- 279
Query: 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
T + + Y+ G A S ++ V G A +RLT N+ P S
Sbjct: 280 --TSGAGINVSASYSPDGQTLAFVSDRSGKPNVYVMSAGGGQA-KRLTFKCPENSEPVWS 336
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
P G I F + G L++MD GG + +L+ G + WSPDG +A
Sbjct: 337 PKGDEIAFTGLQGGIYQLFVMDRNGGN---VRQLSTGGGNYESPTWSPDGRLLAVTR--- 390
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
GS S E+ ++ +G +R L A + N Y
Sbjct: 391 KSGSRS-EICVVSKSGKDVRSLF----AMKGNQSY 420
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 64/220 (29%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMD---------------------------------A 542
P +PDG ++ + + G ++LYI D +
Sbjct: 200 PRFTPDGNYLAYSTYHRGNQDLYITDLRQNTATNALSRRNGLNLAPTFSPDGRTMVVTLS 259
Query: 543 EGG---------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+GG +G + +LT G + ++SPDG+ +AF SDR SG +Y++
Sbjct: 260 KGGNPDLYSMDRQGNIIRQLTSGAGINVSASYSPDGQTLAFVSDR----SGKPNVYVMSA 315
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G ++L + + P +SP G I FT GGI YQ +F +
Sbjct: 316 GGGQAKRL--TFKCPENSEPVWSPKGDEIAFTGLQGGI----------YQ----LFVMDR 359
Query: 654 DGSDLKRLTQNSFEDGTPAWGP--RFIRPVDVEEVKNEQC 691
+G ++++L+ +P W P R + ++E C
Sbjct: 360 NGGNVRQLSTGGGNYESPTWSPDGRLLAVTRKSGSRSEIC 399
>gi|409200436|ref|ZP_11228639.1| WD-40-like beta propeller repeat-containing protein
[Pseudoalteromonas flavipulchra JG1]
Length = 320
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 27/194 (13%)
Query: 422 SFPSFSPKGDRIAFV-EFPG--------VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV 472
S P++S G IAF E+ ++++N+DGS +RQ+ + + P +
Sbjct: 118 SAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADGSEQRQIKNLEGRAPEFMPDGRLLY 177
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
+ P I++ ++DG S V +LT + +N P +SPDG I + S R
Sbjct: 178 QSKASPS-----------QISIANLDG-SEVIQLTQDDTDNMSPQISPDGTKIAYLSNRD 225
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y+M G +G RLT + +WSPDG + FAS+ GS++++ I+
Sbjct: 226 GNQEVYVM---GIDGTNNKRLTRNNIQEWDPSWSPDGTKVYFASEN---VFGSYDVFSIN 279
Query: 593 PNGTGLRKLIQSGS 606
+GT ++K++Q+ S
Sbjct: 280 VDGTSIKKILQNSS 293
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 36/215 (16%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+I + D DG S V+ + ++ +P+VSP G + F +K I + G L
Sbjct: 49 AIYLSDQDGKSPVK-IVKATSSDGYPAVSPLGDKVTFYGKYDNFKTWSIHTVDI-TGRNL 106
Query: 551 HRLTEGPWS-DTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RLT + D+ WS DG IAFA + +N G E++L++ +G+ R++ G
Sbjct: 107 KRLTSKKYVWDSAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADGSEQRQI--KNLEG 164
Query: 609 RANHPYFSPDGK---------SIVFTSDYGGISAEPISTPH------QYQPYG------- 646
RA P F PDG+ S + ++ G ++ Q P G
Sbjct: 165 RA--PEFMPDGRLLYQSKASPSQISIANLDGSEVIQLTQDDTDNMSPQISPDGTKIAYLS 222
Query: 647 ------EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E++ + +DG++ KRLT+N+ ++ P+W P
Sbjct: 223 NRDGNQEVYVMGIDGTNNKRLTRNNIQEWDPSWSP 257
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 48/284 (16%)
Query: 396 EDGNNQLLL---ENIKSPLPDISLFRFDGSFPSFSPKGDRIAF------VEFPGVYVVNS 446
+DGN++ + ++ KSP+ + DG +P+ SP GD++ F + ++ V+
Sbjct: 43 KDGNSKAIYLSDQDGKSPVKIVKATSSDG-YPAVSPLGDKVTFYGKYDNFKTWSIHTVDI 101
Query: 447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP--EFASESSEVDII---SINVDDVDGVS 501
G N +++ K VWD A ++ G FA E + + I + + DG
Sbjct: 102 TGRNLKRLTSKKY---VWD---SAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADG-- 153
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
+ +R N + A P PDG+ + ++ + I + +G E + +LT+ +
Sbjct: 154 SEQRQIKNLEGRA-PEFMPDGR--LLYQSKASPSQISIANLDGSE---VIQLTQDDTDNM 207
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
SPDG IA+ S+RD G+ E+Y++ +GT ++L ++ + P +SPDG
Sbjct: 208 SPQISPDGTKIAYLSNRD----GNQEVYVMGIDGTNNKRLTRNNI--QEWDPSWSPDGTK 261
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+ F S+ + + Y ++F I +DG+ +K++ QNS
Sbjct: 262 VYFASE------------NVFGSY-DVFSINVDGTSIKKILQNS 292
>gi|387872006|ref|YP_005803383.1| protein tolB [Erwinia pyrifoliae DSM 12163]
gi|283479096|emb|CAY75012.1| Protein tolB precursor [Erwinia pyrifoliae DSM 12163]
Length = 439
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 175 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 230
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 231 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDV 284
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 285 GSGQ---IRQITDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 337
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 338 WDGAQNQDAD--VSSDGKSMVMISTNSGAQ--------------HVARQDLVTGAVQQLT 381
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 382 -DTFLDETPSLAP 393
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 212 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 265
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P +++ YTS ++
Sbjct: 266 KLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEPTWFPDSQSLAYTS------DQAG 319
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T +G N VS DGK +V ST +G +++ D G
Sbjct: 320 RPQIYKIGVNG----GTAQRITWDGAQNQDADVSSDGKSMVMISTNSGAQHVARQDLVTG 375
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 376 ---AVQQLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 425
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 426 TDGQVKFPAWSP 437
>gi|56416532|ref|YP_153606.1| translocation protein TolB [Anaplasma marginale str. St. Maries]
gi|254994752|ref|ZP_05276942.1| translocation protein TolB [Anaplasma marginale str. Mississippi]
gi|255004004|ref|ZP_05278805.1| translocation protein TolB [Anaplasma marginale str. Virginia]
gi|67461908|sp|Q5PBH8.1|TOLB_ANAMM RecName: Full=Protein TolB; Flags: Precursor
gi|56387764|gb|AAV86351.1| TolB protein precursor [Anaplasma marginale str. St. Maries]
Length = 441
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 42/250 (16%)
Query: 422 SFPSFSPKGDRIAFVEFP--GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
S P FSP + ++ + G VV D + +ST VR + P
Sbjct: 207 STPRFSPDARNLVYMSYAKSGGSVVLHD--------LETGYSTALGGVRG----VNSSPR 254
Query: 480 FA--------SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
F+ SES++ ++D G S RLT + N S SPD K IVF S R
Sbjct: 255 FSPDGRHVLLSESAQGSTNIYSIDLKSGKST--RLTNDRSINTSASYSPDKKSIVFNSDR 312
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
+G LY+M+A+G R++ G + WSP G+WIAF SF + ++
Sbjct: 313 SGRPQLYVMNADGTN---QRRISSGKGGYSAPAWSPRGDWIAFTKTEGK----SFHVGVM 365
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
P+G+G R L + + P +SP+G+ I+FT +P S H ++ + +
Sbjct: 366 KPDGSGERLLAK---GYMVDSPSWSPNGRVILFTQQ------DPPSATHPFRS--RLVTV 414
Query: 652 KLDGSDLKRL 661
+ G++ + L
Sbjct: 415 DITGTNTQIL 424
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + + +T G+ + P SPD + +V+ S ++ + D E G L
Sbjct: 186 IAIMDQDGANNIY-ITGRGEFVSTPRFSPDARNLVYMSYAKSGGSVVLHDLETGYSTALG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ ++ +SPDG + + GS +Y I +L S +
Sbjct: 245 GVRG---VNSSPRFSPDGRHVLLSES----AQGSTNIYSIDLKSGKSTRLTNDRSINTS- 296
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+SPD KSIVF SD G +P +++ + DG++ +R++ P
Sbjct: 297 -ASYSPDKKSIVFNSDRSG------------RP--QLYVMNADGTNQRRISSGKGGYSAP 341
Query: 672 AWGPR 676
AW PR
Sbjct: 342 AWSPR 346
>gi|312796780|ref|YP_004029702.1| TolB protein [Burkholderia rhizoxinica HKI 454]
gi|312168555|emb|CBW75558.1| TolB protein [Burkholderia rhizoxinica HKI 454]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 151/381 (39%), Gaps = 80/381 (20%)
Query: 328 SPGNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F+ TR Y L+D +K + + VSP++ H +I
Sbjct: 94 AKGANAFVGGSVTRLANGQYEVRFRLYDTIKQQSLGGLSLVSPESGLRMSAHKAADYIYQ 153
Query: 380 D--------SSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSF 426
++R+ Y GG + DG N+ + + SP P IS P++
Sbjct: 154 KLLGSRGMFATRLSYVTRHGGRYQLKISDSDGQNEHIA--LTSPEPIIS--------PTW 203
Query: 427 SPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEF 480
SP G ++A+V F P VY+ + R V + N + W P G +
Sbjct: 204 SPDGTKLAYVSFERKKPIVYIHDLPTGRRVMVSDQKGNNSAPAWSP---------DGTKL 254
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
A S I + + DG S +RRLT + P+ SPDG+ I F S R G +Y M
Sbjct: 255 AVALSLTGNTQIFIVNADG-SGLRRLTRGHSIDTEPAFSPDGQSIYFTSDRGGQPQIYKM 313
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
A+G R+T +T SPDG+ +A+ S G+F +YL +
Sbjct: 314 PAQGESASAAQRVTFNGSYNTSARVSPDGKELAYISRV----GGAFRLYL---------Q 360
Query: 601 LIQSGSA------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
+ +GSA R P F+ +G+ +++ + G + + D
Sbjct: 361 DLSTGSATALTDTTRDESPSFAANGQYLLYATQVNGRQV--------------LAAVSTD 406
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
GS + L+ P+WGP
Sbjct: 407 GSIRQVLSIPGGGVREPSWGP 427
>gi|294146610|ref|YP_003559276.1| putative amidohydrolase [Sphingobium japonicum UT26S]
gi|292677027|dbj|BAI98544.1| putative amidohydrolase [Sphingobium japonicum UT26S]
Length = 992
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFAS 482
S SP G +A ++++ + G +++ YF +A VW P + Y FA
Sbjct: 55 SVSPDGKWLAVDLQGSLWIIPAKGGKAKRITDYFNDARQPVWSPDGSRLAY------FAY 108
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D+ +I D D +R+LT ++ P+ SPDG+ I F S R+G +++ +D
Sbjct: 109 RDGGYDLWTIKPDGSD----MRKLTQGAWDDREPAWSPDGRTIAFSSDRSGNYDIWTLDV 164
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + +++ P D M +WSPDG IA+A + G + + L K +
Sbjct: 165 ASG---AVKQVSSNPREDRMPSWSPDGASIAYAG--IDGGKTALYATTVADGKESLLKQV 219
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
AGR + P + P G+ D G E
Sbjct: 220 ----AGRVDAPSYGPTGQLAYVVQDAKGSHLE 247
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 32/216 (14%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS----GG 477
P+ SP G RIAFV +Y+++S G + A W P +++ YTS G
Sbjct: 324 PTISPDGSRIAFVALGDLYLMSSKGGAPENLTRDAALDADPAWSPDGQSIAYTSDKGGGL 383
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST--RTGYK 535
P+ + D R+LT+ + SPDG I F R G
Sbjct: 384 PQLWMRD-----LKTGKD--------RKLTSIDTQPLGAAWSPDGSRIAFLDVDGRWGVA 430
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---GSFEMYLIH 592
+ ++D G+ L P S T WSPDG+++A A S G+ ++Y+I
Sbjct: 431 GVCVVDVATGKITRLQASLGQPGSPT---WSPDGKYVAIALSYKYSNSFREGTNQIYVIP 487
Query: 593 PNGTG--LRKLIQ--SGSAGR-ANHPYFSPDGKSIV 623
+G G ++ Q +G+ R P +SPDG +
Sbjct: 488 ADGKGEPFWQIPQANAGTDTRGGGGPAWSPDGTKMA 523
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 26/111 (23%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+W+A D GS +++I G +++ + R P +SPDG + +
Sbjct: 57 SPDGKWLAV----DLQGS----LWIIPAKGGKAKRITDYFNDAR--QPVWSPDGSRLAYF 106
Query: 626 SDYGGISAEPISTPHQYQPYG-EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ Y+ G +++ IK DGSD+++LTQ +++D PAW P
Sbjct: 107 A---------------YRDGGYDLWTIKPDGSDMRKLTQGAWDDREPAWSP 142
>gi|197284481|ref|YP_002150353.1| translocation protein TolB [Proteus mirabilis HI4320]
gi|194681968|emb|CAR41400.1| TolB protein [Proteus mirabilis HI4320]
Length = 432
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFVEFP--GVY-----VVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V G Y V + DG N+ +VY + S W P + Y + F S
Sbjct: 168 RIAYVVVTNGGAYPYELRVSDYDGFNQDRVYRSSQPLMSPAWSPDGAKLAYVT----FES 223
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ +V R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 224 GQSALVVQTLATGEV------RQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDL 277
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T G ++T W PDG+ + + SD+ G ++Y I+ NG ++
Sbjct: 278 ASGN---MTQVTNGRSNNTEPTWMPDGQTLVYTSDQ----GGRPQIYKININGGTPERIT 330
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G + +P SPDG +V S G Q+ I K L+ + ++ LT
Sbjct: 331 WEGKQNQ--NPAVSPDGSFLVMVSSESG---------RQH-----IAKQDLETNAVQYLT 374
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 375 -DTFLDETPSIAP 386
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 205 MSPAWSPDGAKLAY------VTFESGQSALVVQTLATGEVRQIASFPRHNGAPAFSPDGS 258
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ N QV + +T W P + +VYTS +
Sbjct: 259 KLAFALSKSGSLNLYVMDLASGNMTQVTNGRSNNTEPTWMPDGQTLVYTS------DQGG 312
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ R+T GK N P+VSPDG ++V S+ +G +++ D E
Sbjct: 313 RPQIYKINING----GTPERITWEGKQNQNPAVSPDGSFLVMVSSESGRQHIAKQDLETN 368
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 369 ---AVQYLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGTI-LRLVSTDGRFKARL--PA 418
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 419 TDGQVKSPAWSP 430
>gi|146310896|ref|YP_001175970.1| translocation protein TolB [Enterobacter sp. 638]
gi|166988076|sp|A4W889.1|TOLB_ENT38 RecName: Full=Protein TolB; Flags: Precursor
gi|145317772|gb|ABP59919.1| TolB, N-terminal domain protein [Enterobacter sp. 638]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWTPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKTMVMVSSAGG 354
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P +PD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWTPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ +R+T G N VS DGK +V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GTPQRITWEGSQNQDADVSSDGKTMVMVSSAGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|227356659|ref|ZP_03841045.1| TolB protein [Proteus mirabilis ATCC 29906]
gi|425067375|ref|ZP_18470491.1| protein tolB [Proteus mirabilis WGLW6]
gi|425073193|ref|ZP_18476299.1| protein tolB [Proteus mirabilis WGLW4]
gi|227163167|gb|EEI48098.1| TolB protein [Proteus mirabilis ATCC 29906]
gi|404595830|gb|EKA96364.1| protein tolB [Proteus mirabilis WGLW4]
gi|404601206|gb|EKB01619.1| protein tolB [Proteus mirabilis WGLW6]
Length = 431
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFVEFP--GVY-----VVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V G Y V + DG N+ +VY + S W P + Y + F S
Sbjct: 167 RIAYVVVTNGGAYPYELRVSDYDGFNQDRVYRSSQPLMSPAWSPDGAKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ +V R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 223 GQSALVVQTLATGEV------RQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T G ++T W PDG+ + + SD+ G ++Y I+ NG ++
Sbjct: 277 ASGN---MTQVTNGRSNNTEPTWMPDGQTLVYTSDQ----GGRPQIYKININGGTPERIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G + +P SPDG +V S G Q+ I K L+ + ++ LT
Sbjct: 330 WEGKQNQ--NPAVSPDGSFLVMVSSESG---------RQH-----IAKQDLETNAVQYLT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSIAP 385
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 204 MSPAWSPDGAKLAY------VTFESGQSALVVQTLATGEVRQIASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ N QV + +T W P + +VYTS +
Sbjct: 258 KLAFALSKSGSLNLYVMDLASGNMTQVTNGRSNNTEPTWMPDGQTLVYTS------DQGG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ R+T GK N P+VSPDG ++V S+ +G +++ D E
Sbjct: 312 RPQIYKINING----GTPERITWEGKQNQNPAVSPDGSFLVMVSSESGRQHIAKQDLETN 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 368 ---AVQYLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGTI-LRLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|222474900|ref|YP_002563315.1| translocation protein TolB [Anaplasma marginale str. Florida]
gi|255002872|ref|ZP_05277836.1| translocation protein TolB [Anaplasma marginale str. Puerto Rico]
gi|222419036|gb|ACM49059.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida]
Length = 441
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 42/250 (16%)
Query: 422 SFPSFSPKGDRIAFVEFP--GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
S P FSP + ++ + G VV D + +ST VR + P
Sbjct: 207 STPRFSPDARNLVYMSYAKSGGSVVLHD--------LETGYSTALGGVRG----VNSSPR 254
Query: 480 FA--------SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
F+ SES++ ++D G S RLT + N S SPD K IVF S R
Sbjct: 255 FSPDGRHVLLSESAQGSTNIYSIDLKSGKST--RLTNDRSINTSASYSPDKKSIVFNSDR 312
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
+G LY+M+A+G R++ G + WSP G+WIAF SF + ++
Sbjct: 313 SGRPQLYVMNADGTN---QRRISSGKGGYSAPAWSPRGDWIAFTKTEGK----SFHVGVM 365
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
P+G+G R L + + P +SP+G+ I+FT +P S H ++ + +
Sbjct: 366 KPDGSGERLLAK---GYMVDSPSWSPNGRVILFTQQ------DPPSATHPFRS--RLVTV 414
Query: 652 KLDGSDLKRL 661
+ G++ + L
Sbjct: 415 DITGTNTQIL 424
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + + +T G+ + P SPD + +V+ S ++ + D E G L
Sbjct: 186 IAIMDQDGANNIY-ITGRGEFVSTPRFSPDARNLVYMSYAKSGGSVVLHDLETGYSTALG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ ++ +SPDG + + GS +Y I +L S +
Sbjct: 245 GVRG---VNSSPRFSPDGRHVLLSES----AQGSTNIYSIDLKSGKSTRLTNDRSINTS- 296
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+SPD KSIVF SD G +P +++ + DG++ +R++ P
Sbjct: 297 -ASYSPDKKSIVFNSDRSG------------RP--QLYVMNADGTNQRRISSGKGGYSAP 341
Query: 672 AWGPR 676
AW PR
Sbjct: 342 AWSPR 346
>gi|288936479|ref|YP_003440538.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
variicola At-22]
gi|288891188|gb|ADC59506.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
variicola At-22]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQKNGGQFPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGAVRQIASFPQHNGAPAFSPDGAKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAVRQIASFPQHNGAPAFSPDGA 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|259909070|ref|YP_002649426.1| translocation protein TolB [Erwinia pyrifoliae Ep1/96]
gi|224964692|emb|CAX56209.1| Protein TolB (Translocation of group A colicins) [Erwinia
pyrifoliae Ep1/96]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 276 GSGQ---IRQITDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 329 WDGAQNQDAD--VSSDGKSMVMISTNSGAQ--------------HVARQDLVTGAVQQLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T +G N VS DGK +V ST +G +++ D G
Sbjct: 311 RPQIYKIGVNG----GTAQRITWDGAQNQDADVSSDGKSMVMISTNSGAQHVARQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQQLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|398800344|ref|ZP_10559616.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
GM01]
gi|398095511|gb|EJL85847.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
GM01]
Length = 431
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGVNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + S DGK++V S GG
Sbjct: 330 WEGAQNQDAD--VSTDGKTMVMISSAGG 355
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ + P+FSP G
Sbjct: 204 MSPAWSPDGSKVAY------VTFESGKSALVVQTLSNGAIRQVASYPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV ST W P + + YTS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPTWFPDSQTLAYTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I + V+ A +R+T G N VS DGK +V S+ G +++ D G
Sbjct: 312 APQIYKVGVNG----GAPQRITWEGAQNQDADVSTDGKTMVMISSAGGAQHVAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +T+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---AVQTITD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|260061328|ref|YP_003194408.1| WD40-like beta Propeller protein [Robiginitalea biformata HTCC2501]
gi|88785460|gb|EAR16629.1| WD40-like Beta Propeller protein [Robiginitalea biformata HTCC2501]
Length = 368
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 31/188 (16%)
Query: 427 SPKGDRIAFVEFPG----VYVVNSDGSNRRQV-----YFKNAFSTVWDPVREAVVYTSGG 477
SP+GDRI F +Y +N DGS+ RQ+ Y AF + P +++ +
Sbjct: 183 SPQGDRIVFTSDRSGDLELYTMNLDGSDVRQITDELGYDGGAF---FSPDGTQIIFRASR 239
Query: 478 PEFASESSEV-DIIS----------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
PE +E +E D++S + + + DG S +R+LT G N P PDG I+
Sbjct: 240 PETEAEIAEYKDLLSRGLVQPTEMELFICNADG-SDLRQLTFLGNANWSPFFHPDGDKIL 298
Query: 527 FRS---TRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
F S + G+ NLY++ G +G GL R+T G D +SPDG+++AF+S+R+N G
Sbjct: 299 FSSNFESEGGFPFNLYLI---GTDGTGLERVTHGQTFDAFPVFSPDGKYLAFSSNRNNGG 355
Query: 583 SGSFEMYL 590
+ +++
Sbjct: 356 TRDTNLFI 363
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D+ G + V +LT +A +VSP G IVF S R+G LY M+ +G +
Sbjct: 153 DSFDIFVADLQG-NIVDQLTDEPGYDAEATVSPQGDRIVFTSDRSGDLELYTMNLDGSD- 210
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T+ D +SPDG I F + R D G E+++
Sbjct: 211 --VRQITDELGYDGGAFFSPDGTQIIFRASRPETEAEIAEYKDLLSRGLVQPTEMELFIC 268
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ LR+L G+A + P+F PDG I+F+S++ P + ++ I
Sbjct: 269 NADGSDLRQLTFLGNANWS--PFFHPDGDKILFSSNFESEGGFPFN----------LYLI 316
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
DG+ L+R+T D P + P
Sbjct: 317 GTDGTGLERVTHGQTFDAFPVFSP 340
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 35/182 (19%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +V+TS S ++++ ++N+D D VR++T + SPDG I
Sbjct: 184 PQGDRIVFTS------DRSGDLELYTMNLDGSD----VRQITDELGYDGGAFFSPDGTQI 233
Query: 526 VFRSTR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+FR++R YK+L +I +A+G + L L WS +
Sbjct: 234 IFRASRPETEAEIAEYKDLLSRGLVQPTEMELFICNADGSDLRQLTFLGNANWSPF---F 290
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
PDG+ I F+S+ ++ G F +YLI +GTGL ++ + P FSPDGK + F+
Sbjct: 291 HPDGDKILFSSNFESEGGFPFNLYLIGTDGTGLERVTHGQTFDA--FPVFSPDGKYLAFS 348
Query: 626 SD 627
S+
Sbjct: 349 SN 350
>gi|390950130|ref|YP_006413889.1| tol-pal system beta propeller repeat protein TolB [Thiocystis
violascens DSM 198]
gi|390426699|gb|AFL73764.1| tol-pal system beta propeller repeat protein TolB [Thiocystis
violascens DSM 198]
Length = 436
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 43/263 (16%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P++SP G RIA+V F NRR + ++ + + +G P F+ E
Sbjct: 210 PAWSPDGQRIAYVSF----------ENRRAAIYVQDLNSGRRDLVASYPGINGSPAFSPE 259
Query: 484 SSEVDIISINVDDVDGVSAVR-------RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++++ D + + RLT + + P+ SPDG+ ++F S R G
Sbjct: 260 GQRL-AMTLSKDGNSEIYVLNLLSRELIRLTDHFAIDTEPAWSPDGRHLIFTSNRGGSPQ 318
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y M A GG R++ + +++PDG +A + R N G+F + ++
Sbjct: 319 IYRMSATGGAA---ERISIDGDYNARASYAPDGRSVAMVT-RIN---GAFRIGVLDTE-R 370
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G+ +L+ +G+ + P F+P+G +++ + +GG G + ++G
Sbjct: 371 GITRLLSNGTLDES--PSFAPNGSMVIYATIHGG--------------RGVLAAASVEGG 414
Query: 657 DLKRLTQNSFEDGTPAWGPRFIR 679
+RL+Q+S + PAW P FIR
Sbjct: 415 GNQRLSQDSGQVREPAWSP-FIR 436
>gi|238752127|ref|ZP_04613610.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380]
gi|238709704|gb|EEQ01939.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380]
Length = 386
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 122 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 177
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+M+
Sbjct: 178 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNL 231
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 232 ASGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 284
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + SPDGK +V S GG I K L+ ++ LT
Sbjct: 285 WEGS--QNQNADVSPDGKFLVLVSSNGGAQ--------------HIAKQDLETGAVQVLT 328
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 329 -DTFLDETPSIAP 340
>gi|357976533|ref|ZP_09140504.1| translocation protein TolB [Sphingomonas sp. KC8]
Length = 440
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 52/287 (18%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N + +I L P F+P + ++ F P +YV + GS R
Sbjct: 196 QDGANHRFLTNGQ----NIVLT------PRFAPNQQSVVYMSFVNDKPRIYVYDI-GSGR 244
Query: 452 RQVYFKN---AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+++ F+ + P +V++ + + DI + A RLTT
Sbjct: 245 QRLVVDQPNMTFAPRFSPDGRFIVFS------MAVNGNTDIYRVPASG----GAATRLTT 294
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ + S SPDG IVF S R G + +Y+M A+G G R++ G WSP
Sbjct: 295 SPGIDTAASYSPDGSRIVFESDRGGTQQIYVMSADGS---GQQRISFGSGRYATPVWSPK 351
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ IAF G F + ++ P+G+G + L +A + P +SP+G+ ++F
Sbjct: 352 GDLIAFTKI-----GGGFRIGIMAPDGSGEKTLT---NAWQDEGPSWSPNGRVVMFFRTA 403
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G +++ + L G + KR+ + PAWGP
Sbjct: 404 QGSGKA------------DLWSVDLTGVNEKRVP-TPLDGSDPAWGP 437
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 28/190 (14%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG A R TNG+N P +P+ + +V+ S +Y+ D G
Sbjct: 188 IKRLAIMDQDG--ANHRFLTNGQNIVLTPRFAPNQQSVVYMSFVNDKPRIYVYDI----G 241
Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G RL + P +SPDG +I F+ + G+ ++Y + +G +L + S
Sbjct: 242 SGRQRLVVDQPNMTFAPRFSPDGRFIVFSMAVN----GNTDIYRVPASGGAATRL--TTS 295
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
G +SPDG IVF SD GG +I+ + DGS +R++ S
Sbjct: 296 PGIDTAASYSPDGSRIVFESDRGGTQ--------------QIYVMSADGSGQQRISFGSG 341
Query: 667 EDGTPAWGPR 676
TP W P+
Sbjct: 342 RYATPVWSPK 351
>gi|385787758|ref|YP_005818867.1| translocation protein TolB [Erwinia sp. Ejp617]
gi|310767030|gb|ADP11980.1| translocation protein TolB [Erwinia sp. Ejp617]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 276 GSGQ---IRQITDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 329 WDGAQNQDAD--VSSDGKSMVMISTNSGAQ--------------HVARQDLVTGAVQQLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ ST W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T +G N VS DGK +V ST +G +++ D G
Sbjct: 311 RPQIYKIGVNG----GTAQRITWDGAQNQDADVSSDGKSMVMISTNSGAQHVARQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQQLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|206575815|ref|YP_002239638.1| translocation protein TolB [Klebsiella pneumoniae 342]
gi|290510464|ref|ZP_06549834.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
1_1_55]
gi|226705885|sp|B5XZC1.1|TOLB_KLEP3 RecName: Full=Protein TolB; Flags: Precursor
gi|206564873|gb|ACI06649.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae 342]
gi|289777180|gb|EFD85178.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
1_1_55]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQKNGGQFPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGAVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|442771455|gb|AGC72141.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [uncultured
bacterium A1Q1_fos_560]
Length = 440
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSD 560
A +RLT N + PS SP G+ + F S R G +++M A+G + RLT EG + +
Sbjct: 287 ASQRLTVNQGGDLSPSWSPTGRELAFTSDRGGAPQIFVMSADGSN---VRRLTYEGDY-N 342
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
WSP G WIA+ +++ ++ P+G +++ + G + P +SPDG+
Sbjct: 343 AAPAWSPRGNWIAYVC---RTAQRLYKVCIVSPDGQ--KRVQVTTGPGIDDSPSWSPDGR 397
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ F+S G S I+ + DG +L+R+T + +P+W P
Sbjct: 398 HLTFSSTVDGKS--------------HIYMVDTDGKNLERITFGGTHNSSPSWSP 438
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHR 552
V D DG +++T +G N P SPD ++IVF + R+ +++ I++ G+ + L
Sbjct: 191 VMDYDGYEP-KQITADGFLNLMPRWSPDRRFIVFTAYRSRNTQDIDILELATGKRWTLVS 249
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
+ P + SPDG ++AFAS +D G+ E+Y + ++L + + G
Sbjct: 250 M---PGLNITPALSPDGNFLAFASSQD----GNSEIYKLDTRTKASQRL--TVNQGGDLS 300
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
P +SP G+ + FTSD GG +IF + DGS+++RLT + PA
Sbjct: 301 PSWSPTGRELAFTSDRGGAP--------------QIFVMSADGSNVRRLTYEGDYNAAPA 346
Query: 673 WGPR 676
W PR
Sbjct: 347 WSPR 350
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNS--DGSNRRQVYFKNAFSTVWDPVREAVVYTS-- 475
P+ SP G+ +AF +Y +++ S R V S W P + +TS
Sbjct: 257 PALSPDGNFLAFASSQDGNSEIYKLDTRTKASQRLTVNQGGDLSPSWSPTGRELAFTSDR 316
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G P+ I V DG S VRRLT G NA P+ SP G WI + RT
Sbjct: 317 GGAPQ------------IFVMSADG-SNVRRLTYEGDYNAAPAWSPRGNWIAY-VCRTA- 361
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+ LY + +G ++T GP D +WSPDG + F+S D G +Y++ +
Sbjct: 362 QRLYKVCIVSPDGQKRVQVTTGPGIDDSPSWSPDGRHLTFSSTVD----GKSHIYMVDTD 417
Query: 595 GTGLRKLIQSGSAGRANHPYFSP 617
G L ++ G+ + P +SP
Sbjct: 418 GKNLERITFGGT--HNSSPSWSP 438
>gi|398805640|ref|ZP_10564607.1| tol-pal system beta propeller repeat protein TolB [Polaromonas sp.
CF318]
gi|398090896|gb|EJL81354.1| tol-pal system beta propeller repeat protein TolB [Polaromonas sp.
CF318]
Length = 429
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 116/280 (41%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V ++V +SDG + + S W P G + A S
Sbjct: 167 RIAYVTKAAQKYNLWVADSDGEGAQSALTSPEPIISPAWSP---------NGAQLAYVSF 217
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E I DV S RRL N + +N+ P+ SPDGK +V +R G LY + G
Sbjct: 218 ESRKPVIYAHDV--ASGKRRLLANFRGSNSAPAWSPDGKQLVATLSRDGGSQLYAIGLNG 275
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G+ RLT+ DT +SPDG +I F SDR G+ ++Y + PNG ++ +
Sbjct: 276 GD---PKRLTQSSSIDTEPAFSPDGRYIYFVSDR----GGAPQIYRMGPNGGNAERVTFT 328
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGI-----------SAEPIS----------TPH--- 640
GS + P SPDG+ + + S GG + PI+ P+
Sbjct: 329 GSYNIS--PAISPDGRWLAYISRVGGAFKLHVMELATGTVTPITDTSADESPSFAPNSRL 386
Query: 641 -----QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Q + LDG RL+ S + P WGP
Sbjct: 387 IVYATQQQGREALMTTTLDGKIKARLSGASGDIREPDWGP 426
>gi|384153403|ref|YP_005536219.1| hypothetical protein RAM_41475 [Amycolatopsis mediterranei S699]
gi|340531557|gb|AEK46762.1| hypothetical protein RAM_41475 [Amycolatopsis mediterranei S699]
Length = 1015
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 492 INVDDVDGV-------SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I VD V G+ RRLT + ++ P+ SPDG+ +VF+S R G +LY++DA G
Sbjct: 52 IAVDLVTGIWVLPAGGGRARRLTDDLQDATLPTWSPDGRRLVFQSYRDGNFHLYVIDAAG 111
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G +LTEG + +SPDG +AF+SDRD GS+ ++L+ + ++
Sbjct: 112 GTP---RKLTEGRFDHREPVFSPDGTKLAFSSDRD----GSYGIHLLDLASGAISTVVS- 163
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
+ P +S DG IVFT + I ++T
Sbjct: 164 -TPDEEASPRWSADGTKIVFTVNDTAIDVVTLAT 196
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
N ++SPDG+WI ++++ A GG RLT+ T+ WSPDG
Sbjct: 39 TNLSAALSPDGRWIAVDLV----TGIWVLPAGGGRA---RRLTDDLQDATLPTWSPDGRR 91
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--PYFSPDGKSIVFTSDYG 629
+ F S RD G+F +Y+I G RKL + GR +H P FSPDG + F+SD
Sbjct: 92 LVFQSYRD----GNFHLYVIDAAGGTPRKLTE----GRFDHREPVFSPDGTKLAFSSDRD 143
Query: 630 G 630
G
Sbjct: 144 G 144
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
A P VS DGK I FR+ +Y++ A GG RL + ++ ++ PDG +
Sbjct: 311 ASPVVSRDGKRIAFRA----LNAIYVVAAGGGRP---QRLIGDGYFNSDPDFHPDGTKLL 363
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ SDR G+ +++L H GTG ++ AG P +SPDG + + G
Sbjct: 364 YTSDR----LGTADLWL-HDLGTGTDTVLTQ-LAGAQVAPRWSPDGGRVAYADQDG 413
>gi|398794416|ref|ZP_10554478.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
YR343]
gi|398208677|gb|EJM95388.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
YR343]
Length = 431
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GKSALVVQTLSN------GAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y + NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVGINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + S DGK++V S GG
Sbjct: 330 WEGAQNQDAD--VSTDGKTMVMISSAGG 355
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ + P+FSP G
Sbjct: 204 MSPAWSPDGSKVAY------VTFESGKSALVVQTLSNGAIRQVASYPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV ST W P + + YTS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPTWFPDSQTLAYTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I + ++ A +R+T G N VS DGK +V S+ G +++ D G
Sbjct: 312 APQIYKVGING----GAPQRITWEGAQNQDADVSTDGKTMVMISSAGGAQHVAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +T+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---AVQTITD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|334140412|ref|YP_004533614.1| translocation protein TolB [Novosphingobium sp. PP1Y]
gi|333938438|emb|CCA91796.1| translocation protein TolB [Novosphingobium sp. PP1Y]
Length = 462
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 121/267 (45%), Gaps = 49/267 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSG 476
P +SP RI ++ + P +Y + SN +++ + T+ W P + V+Y+
Sbjct: 235 PRYSPDYSRILYLSYLNGQPSIYSYDL-ASNSQKLIVRTGNPTMAPRWSPDGKWVLYS-- 291
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S DI I+ G +RLT N S SPDG IVF S R+G +
Sbjct: 292 ----MSMGGRTDIYRISSA---GGGTPQRLTNGPGINIGGSYSPDGSRIVFESDRSGSQQ 344
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+G HR++ WSP G+ IAF +G+ + ++ P+G
Sbjct: 345 IYVMNADGSN---QHRISFFGGRAATPEWSPRGDQIAFTHI-----AGNLRIAVMSPDGR 396
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+R L S + P +SP+G+ + F T GI++ I+++ L
Sbjct: 397 GMRYLTNS---WQDEAPTWSPNGRIVQFFRTEKNSGITS--------------IWQVDLT 439
Query: 655 GSDLKRL-TQNSFEDGTPAWGPRFIRP 680
G + ++L T D PAWGP +RP
Sbjct: 440 GRNERKLPTPVGASD--PAWGP--VRP 462
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD SR+ + R GS + DG+NQ IS F + P +SP+GD+
Sbjct: 327 SPDGSRIVFESDRSGSQQIYVMNADGSNQH----------RISFFGGRAATPEWSPRGDQ 376
Query: 433 IAFVEFPG---VYVVNSDGSNRRQVYFKNAF---STVWDP 466
IAF G + V++ DG R Y N++ + W P
Sbjct: 377 IAFTHIAGNLRIAVMSPDGRGMR--YLTNSWQDEAPTWSP 414
>gi|238793897|ref|ZP_04637517.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC
29909]
gi|238726800|gb|EEQ18334.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC
29909]
Length = 413
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 149 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 204
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F +++G NLY+MD
Sbjct: 205 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGTKLAFALSKSGSLNLYVMDL 258
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 259 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 311
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + SPDGK + S GG I K L+ ++ LT
Sbjct: 312 WEGS--QNQNADVSPDGKFLALVSSNGGAQ--------------HIAKQDLETGAVQVLT 355
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 356 -DTFLDETPSIAP 367
>gi|300789887|ref|YP_003770178.1| hypothetical protein AMED_8073 [Amycolatopsis mediterranei U32]
gi|299799401|gb|ADJ49776.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 922
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 492 INVDDVDGV-------SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I VD V G+ RRLT + ++ P+ SPDG+ +VF+S R G +LY++DA G
Sbjct: 52 IAVDLVTGIWVLPAGGGRARRLTDDLQDATLPTWSPDGRRLVFQSYRDGNFHLYVIDAAG 111
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G +LTEG + +SPDG +AF+SDRD GS+ ++L+ + ++
Sbjct: 112 GTP---RKLTEGRFDHREPVFSPDGTKLAFSSDRD----GSYGIHLLDLASGAISTVVS- 163
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
+ P +S DG IVFT + I ++T
Sbjct: 164 -TPDEEASPRWSADGTKIVFTVNDTAIDVVTLAT 196
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
N ++SPDG+WI ++++ A GG RLT+ T+ WSPDG
Sbjct: 39 TNLSAALSPDGRWIAVDLV----TGIWVLPAGGGRA---RRLTDDLQDATLPTWSPDGRR 91
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--PYFSPDGKSIVFTSDYG 629
+ F S RD G+F +Y+I G RKL + GR +H P FSPDG + F+SD
Sbjct: 92 LVFQSYRD----GNFHLYVIDAAGGTPRKLTE----GRFDHREPVFSPDGTKLAFSSDRD 143
Query: 630 G 630
G
Sbjct: 144 G 144
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
A P VS DGK I FR+ +Y++ A GG RL + ++ ++ PDG +
Sbjct: 311 ASPVVSRDGKRIAFRA----LNAIYVVAAGGGRP---QRLIGDGYFNSDPDFHPDGTKLL 363
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ SDR G+ +++L H GTG ++ AG P +SPDG + + G
Sbjct: 364 YTSDR----LGTADLWL-HDLGTGTDTVLTQ-LAGAQVAPRWSPDGGRVAYADQDG 413
>gi|114765731|ref|ZP_01444829.1| translocation protein TolB precursor [Pelagibaca bermudensis
HTCC2601]
gi|114541948|gb|EAU44983.1| translocation protein TolB precursor [Roseovarius sp. HTCC2601]
Length = 446
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 53/266 (19%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN----AFSTVWDPVREAVVYTS 475
P FSP G+R+ + + P V+V+N G+ + Q+ +F+ + P VVY+
Sbjct: 218 PRFSPNGERVLYTSYESGEPRVHVLNV-GAVQSQIMSAGGGVMSFAPRFSPDGSKVVYS- 275
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ S DI ++ + +LT PS SPDG IVF S R+G +
Sbjct: 276 -----VTSGSNTDIYMRDLAS----GSTTQLTFTPAIETAPSFSPDGSRIVFESDRSGSQ 326
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G
Sbjct: 327 QLYVMPASGGE---PTRISFGQGRYGTPVWSPRGDLIAFTKQNQ----GRFHIGVMRTDG 379
Query: 596 TGLRKLIQSGSAGRANH----PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ R L A+H P ++P+G+ ++F+ + G S ++ +
Sbjct: 380 SEERLLT-------ASHLDEGPTWAPNGRVLMFSRETQGASGT-----------SSLYSV 421
Query: 652 KLDGSDLKRLTQNSFEDGT--PAWGP 675
+ G ++LT+ DG P+WGP
Sbjct: 422 DVAG---RKLTRVRTPDGASDPSWGP 444
>gi|284116166|ref|ZP_06386712.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
gi|283829532|gb|EFC33886.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
Length = 312
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 66/311 (21%)
Query: 379 PDSSRVGYHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
P +++V + R G+ RE DG++Q+ L N R D +FP +SP G+R
Sbjct: 2 PTTAKVVFTSERDGN-REIYMMNPDGSDQVRLTN----------HRADDTFPVWSPTGER 50
Query: 433 IAFVE-------FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
+ F +Y+++ DG N R+V+ K+ R A ++ G + A
Sbjct: 51 VLFASDRDRFTLSRDLYLMDPDGKNVRRVFGKSE-------DRSAATWSPDGKQIAYSRR 103
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN----LYIMD 541
E++ I + +DG R +G P+ SPDG I F S G++N + I+D
Sbjct: 104 ELNGAYIYIGTIDGKKEERMAIGDGS----PAWSPDGTQIAFLS---GFENKQVRINILD 156
Query: 542 AEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE-----MYLIHPNG 595
+ L R + W + WS + +AF+ NPG+ +Y ++ +G
Sbjct: 157 VRTKKQKVLFPREAKPSWINGDLVWSLTTDQLAFSW---NPGAKKENVDMETLYTLNSDG 213
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
TGL++ I S +A R P +SP G ++++ + + ++ Q IFKI L G
Sbjct: 214 TGLKR-ITSDAAPRETSPVWSPQGDALLY---------DKVDKHNRLQ----IFKIAL-G 258
Query: 656 SDLKRLTQNSF 666
SD+ ++F
Sbjct: 259 SDISEQLTDTF 269
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 23/167 (13%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
+VF S R G + +Y+M+ +G + RLT DT WSP GE + FASDRD +
Sbjct: 7 VVFTSERDGNREIYMMNPDGSDQV---RLTNHRADDTFPVWSPTGERVLFASDRDR-FTL 62
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
S ++YL+ P+G +R++ G + + +SPDGK I + S ++ +
Sbjct: 63 SRDLYLMDPDGKNVRRVF--GKSEDRSAATWSPDGKQIAY-------SRRELNGAY---- 109
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQC 691
I+ +DG +R+ + DG+PAW P + + +N+Q
Sbjct: 110 ---IYIGTIDGKKEERM---AIGDGSPAWSPDGTQIAFLSGFENKQV 150
>gi|408672077|ref|YP_006871825.1| WD40-like beta propeller [Emticicia oligotrophica DSM 17448]
gi|387853701|gb|AFK01798.1| WD40-like beta propeller [Emticicia oligotrophica DSM 17448]
Length = 350
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 34/203 (16%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D+ G +RLT +A +VSPDGK IVF STR G +LYIMD +G
Sbjct: 135 DSFDIYVADLKG-KVKKRLTNTPGYDAEATVSPDGKKIVFTSTRNGDLDLYIMDIDGKN- 192
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR----------------DNPGSGSFEMYLI 591
+ ++T D +SPD + + F + R + + E++
Sbjct: 193 --VKQITHELGYDGGAFFSPDSKKLVFRASRFSTEEEKTEYKENLKKNLVAPTNMEIFTC 250
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG-EIFK 650
+ +G+ L+++ + G A A PYF+P G I+F S++ H + Y +++
Sbjct: 251 NIDGSDLKQITKLGKANWA--PYFTPKGDKIIFASNH-----------HSQRGYDFQLYM 297
Query: 651 IKLDGSDLKRLTQNSFEDGTPAW 673
I +DG+ L+++T S + P +
Sbjct: 298 INIDGTGLEKITTESNFNAFPMF 320
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 513 NAFPSVSPDGK---WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+A P V GK W ++ S ++Y+ D +G RLT P D SPDG
Sbjct: 117 HACPPVPDMGKKYLWAIYDSF-----DIYVADLKGKVK---KRLTNTPGYDAEATVSPDG 168
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ I F S R+ G ++Y++ +G ++++ G +FSPD K +VF +
Sbjct: 169 KKIVFTSTRN----GDLDLYIMDIDGKNVKQITHE--LGYDGGAFFSPDSKKLVFRASRF 222
Query: 630 GISAEPISTPHQYQPY------GEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
E + EIF +DGSDLK++T+ G W P F
Sbjct: 223 STEEEKTEYKENLKKNLVAPTNMEIFTCNIDGSDLKQITKL----GKANWAPYF 272
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 35/182 (19%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +V+TS + + ++D+ + D+DG + V+++T + SPD K +
Sbjct: 166 PDGKKIVFTS------TRNGDLDLY---IMDIDGKN-VKQITHELGYDGGAFFSPDSKKL 215
Query: 526 VFRSTRTGY------------KNL--------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
VFR++R KNL + + +G + + +L + W+ +
Sbjct: 216 VFRASRFSTEEEKTEYKENLKKNLVAPTNMEIFTCNIDGSDLKQITKLGKANWAPY---F 272
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
+P G+ I FAS+ + F++Y+I+ +GTGL K+ + P FS DGK ++F+
Sbjct: 273 TPKGDKIIFASNHHSQRGYDFQLYMINIDGTGLEKITTESNFNA--FPMFSYDGKKLIFS 330
Query: 626 SD 627
S+
Sbjct: 331 SN 332
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 427 SPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEF 480
SP G +I F +Y+++ DG N +Q+ + + + P + +V+ + F
Sbjct: 165 SPDGKKIVFTSTRNGDLDLYIMDIDGKNVKQITHELGYDGGAFFSPDSKKLVFRAS--RF 222
Query: 481 ASES----------------SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
++E + ++I + N+D D ++++T GK N P +P G
Sbjct: 223 STEEEKTEYKENLKKNLVAPTNMEIFTCNIDGSD----LKQITKLGKANWAPYFTPKGDK 278
Query: 525 IVFRS---TRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
I+F S ++ GY LY+++ +G GL ++T + +S DG+ + F+S+R+N
Sbjct: 279 IIFASNHHSQRGYDFQLYMINIDGT---GLEKITTESNFNAFPMFSYDGKKLIFSSNRNN 335
Query: 581 PGSGSFEMYL 590
G+ +++
Sbjct: 336 GGTRDTNLFI 345
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 41/200 (20%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY----KNLYIMDAEGGEGYGLHR--L 553
++ +R+LT G NNA S D K+I F+S + ++ MD G R
Sbjct: 28 LTNIRQLTFGG-NNAEAYFSRDSKYISFQSDNPAWGLSCDQIFYMDVTKGLKDPKVRPNF 86
Query: 554 TEGPWSDTMCN-WSPDGEWIAFASDRDNPGSG-----------------SFEMYLIHPNG 595
+ T C+ + P+G+ I +AS ++ G SF++Y+ G
Sbjct: 87 ISTSFGRTTCSFFMPNGKEILYASTHESGGHACPPVPDMGKKYLWAIYDSFDIYVADLKG 146
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
++L + + G SPDGK IVFTS G +++ + +DG
Sbjct: 147 KVKKRL--TNTPGYDAEATVSPDGKKIVFTSTRNGDL--------------DLYIMDIDG 190
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++K++T DG + P
Sbjct: 191 KNVKQITHELGYDGGAFFSP 210
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 441 VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
++ N DGS+ +Q+ K ++ + P + +++ S + + + IN+D
Sbjct: 247 IFTCNIDGSDLKQITKLGKANWAPYFTPKGDKIIFASN--HHSQRGYDFQLYMINIDG-- 302
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR----TGYKNLYIMD 541
+ + ++TT NAFP S DGK ++F S R T NL+I D
Sbjct: 303 --TGLEKITTESNFNAFPMFSYDGKKLIFSSNRNNGGTRDTNLFIAD 347
>gi|334343451|ref|YP_004556055.1| amidohydrolase [Sphingobium chlorophenolicum L-1]
gi|334104126|gb|AEG51549.1| amidohydrolase [Sphingobium chlorophenolicum L-1]
Length = 992
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 21/212 (9%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFAS 482
S SP G +A ++++ + G R++ YF +A VW P + Y FA
Sbjct: 55 SVSPDGKWLAVDLQGSLWIIPAKGGKARRITDYFNDARQPVWSPDGSRLAY------FAY 108
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D+ +I D D +R+LT ++ P+ SPDG+ I F S R+G +++ +D
Sbjct: 109 RDGGYDLWTIRPDGSD----MRKLTGGAWDDREPTWSPDGRTIAFSSDRSGNYDIWTLDV 164
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + + + P D M +WSPDG IA+A D + + L + L+++
Sbjct: 165 ASG---AVKQRSSNPREDRMPSWSPDGASIAYAG-IDGGKTALYATSLADGKESLLKQV- 219
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
AGR + P + P G+ D G E
Sbjct: 220 ----AGRIDAPSYGPAGQLAYVVQDAKGSHLE 247
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 129/513 (25%), Positives = 188/513 (36%), Gaps = 92/513 (17%)
Query: 176 GEYLIYVSTHENPG-----TPRTSWAAV------YSTELKTGLTRRLTPYGVADFSPAVS 224
GE I HE +P W AV + K G RR+T Y P S
Sbjct: 38 GETPIAFDVHEGTSMAVSVSPDGKWLAVDLQGSLWIIPAKGGKARRITDYFNDARQPVWS 97
Query: 225 PSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW----PCWV-DEST 279
P G A +Y + G+D ++ R ++ + G W P W D T
Sbjct: 98 PDGSRLAYFAYRDGGYD-----------LWTIRPDGSDMRKLTGGAWDDREPTWSPDGRT 146
Query: 280 LFFH--RKSEEDDW-ISVYKVILPQTGL---------VSTESVSIQRVTPPGLHAFTPAT 327
+ F R D W + V + Q S + SI G AT
Sbjct: 147 IAFSSDRSGNYDIWTLDVASGAVKQRSSNPREDRMPSWSPDGASIAYAGIDGGKTALYAT 206
Query: 328 SPGNNK---FIAVATRRPTSSYRHIELFDLV----KNKFIELTRFVSPKTHHLNPF-ISP 379
S + K VA R SY V K +E+ T ++ PF IS
Sbjct: 207 SLADGKESLLKQVAGRIDAPSYGPAGQLAYVVQDAKGSHLEVDGKTVSGTENVFPFRISW 266
Query: 380 DSSRVGYHKCRGGSTREDGNNQLL-------LENIKSPLP------DISLFR--FDGSFP 424
S GYH G R +L LE +K+ P D + R P
Sbjct: 267 GKS--GYHYVSDGKIRYRSGPRLATVDFAATLEAVKASYPRAKRDWDSTAPRKALGIVHP 324
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS--GGPEF 480
+ SP G RIAFV +Y+++S G + A W P +++ YTS GG
Sbjct: 325 TISPDGSRIAFVALGDLYLMSSKGGTPENLTKDAALDADPAWSPDGQSIAYTSDKGG--- 381
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST--RTGYKNLY 538
+ + + D+ R+LT+ + SPDG+ I F R G +
Sbjct: 382 -------GLPQLWIRDLKS-GKDRKLTSIDTQPLGAAWSPDGRRIAFLDVDGRWGVAGVC 433
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---GSFEMYLIHPNG 595
++D G+ L P S T WSPDG+++A A S G+ ++Y+I +G
Sbjct: 434 VVDVATGKITRLQSSLGQPGSPT---WSPDGKYVAIALSYKYSNSFREGTNQVYVIPADG 490
Query: 596 TG--LRKLIQ--SGSAGR-ANHPYFSPDGKSIV 623
G ++ Q +G+ R P +SPDG +
Sbjct: 491 KGEPFWQIPQANAGTDTRGGGGPAWSPDGMKMA 523
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+W+A D GS +++I G R++ + R P +SPDG + +
Sbjct: 57 SPDGKWLAV----DLQGS----LWIIPAKGGKARRITDYFNDAR--QPVWSPDGSRLAYF 106
Query: 626 SDYGGISAEPISTPHQYQPYG-EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ Y+ G +++ I+ DGSD+++LT +++D P W P
Sbjct: 107 A---------------YRDGGYDLWTIRPDGSDMRKLTGGAWDDREPTWSP 142
>gi|359398311|ref|ZP_09191333.1| translocation protein TolB [Novosphingobium pentaromativorans
US6-1]
gi|357600318|gb|EHJ62015.1| translocation protein TolB [Novosphingobium pentaromativorans
US6-1]
Length = 462
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 121/267 (45%), Gaps = 49/267 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSG 476
P +SP RI ++ + P +Y + SN +++ + T+ W P + V+Y+
Sbjct: 235 PRYSPDYSRILYLSYLNGQPSIYSYDL-ASNSQKLIVRTGNPTMAPRWSPDGKWVLYS-- 291
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S DI I+ G +RLT N S SPDG IVF S R+G +
Sbjct: 292 ----MSMGGRTDIYRISSA---GGGTPQRLTNGPGINIGGSYSPDGSRIVFESDRSGSQQ 344
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+G HR++ WSP G+ IAF +G+ + ++ P+G
Sbjct: 345 IYVMNADGSN---QHRISFFGGRAATPEWSPRGDQIAFTHI-----AGNLRIAVMSPDGR 396
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+R L S + P +SP+G+ + F T GI++ I+++ L
Sbjct: 397 GMRYLTNS---WQDEAPTWSPNGRIVQFFRTEKNSGITS--------------IWQVDLT 439
Query: 655 GSDLKRL-TQNSFEDGTPAWGPRFIRP 680
G + ++L T D PAWGP +RP
Sbjct: 440 GRNERKLPTPVGASD--PAWGP--VRP 462
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD SR+ + R GS + DG+NQ IS F + P +SP+GD+
Sbjct: 327 SPDGSRIVFESDRSGSQQIYVMNADGSNQH----------RISFFGGRAATPEWSPRGDQ 376
Query: 433 IAFVEFPG---VYVVNSDGSNRRQVYFKNAF---STVWDP 466
IAF G + V++ DG R Y N++ + W P
Sbjct: 377 IAFTHIAGNLRIAVMSPDGRGMR--YLTNSWQDEAPTWSP 414
>gi|402773801|ref|YP_006593338.1| protein tolB [Methylocystis sp. SC2]
gi|401775821|emb|CCJ08687.1| Protein tolB [Methylocystis sp. SC2]
Length = 439
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P FSP + ++ F P V ++N + S R V + FS + P + ++ +
Sbjct: 211 PRFSPNSLDVTYMSFGADGDPKVLLMNIENSQREVVGNFPGMTFSPRFSPDGQKIIMS-- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ S ++ ++++ RLT G + PS SPDG IVF S R G +
Sbjct: 269 ----LAQGSTTNLYTMDLRS----RTTMRLTDTGAIDTAPSYSPDGARIVFESDRGGSQQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M A GGE R++ G + WSP G++IAF G+F + ++ +G+
Sbjct: 321 IYVMGAHGGEA---KRISFGGGRYSTPVWSPKGDYIAFTKQN----GGNFAIGVMKIDGS 373
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L + G N P ++P+G ++F D G +I+ + + G
Sbjct: 374 GERILTE----GFHNEGPTWAPNGLFLMFFRDSSGGGGP------------KIYMVDVFG 417
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++ F PAWGP
Sbjct: 418 RSETQVPTPGFAS-DPAWGP 436
>gi|182677268|ref|YP_001831414.1| beta-propeller repeat-containing to-pal system protein TolB
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182633151|gb|ACB93925.1| Tol-Pal system beta propeller repeat protein TolB [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 448
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P V ++N + R V + FS + P + +V +
Sbjct: 221 PRFSPSSQDITYMSFGAADPKVLLLNIETGQREVVGNFPGMTFSPRFSPDGQKIVMS--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ + ++ ++++ + RL+ + + PS SPDG IVF S R G + +
Sbjct: 278 ---LSQGASSNLFTMDLRSRN----TTRLSDSSSIDTSPSYSPDGTQIVFESDRGGTQQI 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G + WSP G++IAF + + SF + ++ P+G+G
Sbjct: 331 YMMSAAGG---GTRRVSFGDGRYSTPVWSPRGDYIAFTRQKGS----SFGIGVMKPDGSG 383
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
R L + G N P ++P+G I+F D G
Sbjct: 384 ERILTE----GFHNEGPTWAPNGLYIMFFRDASG 413
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 75/188 (39%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR LT P SP + I + S + +++ E G+ +
Sbjct: 198 LAIMDQDGAN-VRYLTRGDDLVVTPRFSPSSQDITYMSFGAADPKVLLLNIETGQREVVG 256
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ I + + S F M L N T L S S+
Sbjct: 257 NF---PGMTFSPRFSPDGQKIVMSLSQ-GASSNLFTMDLRSRNTTRL-----SDSSSIDT 307
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +I+ + G +R+ SF DG
Sbjct: 308 SPSYSPDGTQIVFESDRGGTQ--------------QIYMMSAAGGGTRRV---SFGDGRY 350
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 351 STPVWSPR 358
>gi|417860851|ref|ZP_12505906.1| translocation protein TolB [Agrobacterium tumefaciens F2]
gi|338821255|gb|EGP55224.1| translocation protein TolB [Agrobacterium tumefaciens F2]
Length = 443
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 216 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 273 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSFSPDGQRVAFESDRGGRQQI 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G RL+ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVMNADGS---GQQRLSFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 379 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 423 NEQLIKTPTFAS-DPAWSP 440
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 177 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 229
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 230 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 282
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P FSPDG+ + F SD GG +I+
Sbjct: 283 TMDLRSRTTTRLTNTSAIDTA--PSFSPDGQRVAFESDRGGRQ--------------QIY 326
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +RL SF DG TP W PR
Sbjct: 327 VMNADGSGQQRL---SFGDGSYSTPVWSPR 353
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 38/183 (20%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 254 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSF 306
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD RV + RGG + DG+ Q L DGS+ P +SP+G
Sbjct: 307 SPDGQRVAFESDRGGRQQIYVMNADGSGQQRLSF------------GDGSYSTPVWSPRG 354
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ +DGS R + F N T W P +++ +GGP+
Sbjct: 355 DLIAFTKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQ 413
Query: 480 FAS 482
S
Sbjct: 414 LYS 416
>gi|197106553|ref|YP_002131930.1| translocation protein TolB [Phenylobacterium zucineum HLK1]
gi|196479973|gb|ACG79501.1| periplasmic component of the Tol biopolymer transport system
[Phenylobacterium zucineum HLK1]
Length = 430
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 30/204 (14%)
Query: 478 PEFASESSEVDIISINVDD-----VDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTR 531
P F+S S E+ +S+ D + + R N + F P SPDG + F R
Sbjct: 204 PRFSSNSQEITYMSLRPDGSSIWLFNLETGRRESLGNFQGMVFAPRFSPDGGRVAFSVER 263
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G ++Y+M RLT P DT ++SPDG+ I F SDR SGS ++Y++
Sbjct: 264 GGNSDIYVMSLSSRS---STRLTSDPSIDTSPSFSPDGQRIVFNSDR----SGSAQLYVM 316
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+G+ R++ S GR P +SP G+ I FT GG Q+ I +
Sbjct: 317 GADGSNPRRI--SFGQGRYTTPVWSPTGEFIAFTKQTGG----------QFH----IGVM 360
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGSD +RL +S+ D P W P
Sbjct: 361 RADGSD-ERLLTSSYLDEGPTWAP 383
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG+ IVF S R+G LY+M G +G R++ G T WSP GE+IAF
Sbjct: 292 PSFSPDGQRIVFNSDRSGSAQLYVM---GADGSNPRRISFGQGRYTTPVWSPTGEFIAFT 348
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G F + ++ +G+ R L S+ P ++P+G+ ++F+ + G
Sbjct: 349 KQT----GGQFHIGVMRADGSDERLLT---SSYLDEGPTWAPNGRVLMFSRETPG 396
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
N++ I + RP S I LF+L + L F + P SPD RV + R
Sbjct: 209 NSQEITYMSLRPDGS--SIWLFNLETGRRESLGNF---QGMVFAPRFSPDGGRVAFSVER 263
Query: 391 GGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYV 443
GG++ +++ P D S PSFSP G RI F +YV
Sbjct: 264 GGNSDIYVMSLSSRSSTRLTSDPSIDTS--------PSFSPDGQRIVFNSDRSGSAQLYV 315
Query: 444 VNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS 501
+ +DGSN R++ F T VW P E + +T + I + D D
Sbjct: 316 MGADGSNPRRISFGQGRYTTPVWSPTGEFIAFTK------QTGGQFHIGVMRADGSD--- 366
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYKNLYIMDAEG 544
RL T+ + P+ +P+G+ ++F R T G L+ +D G
Sbjct: 367 --ERLLTSSYLDEGPTWAPNGRVLMFSRETPGGAPRLWSVDVTG 408
>gi|238797730|ref|ZP_04641224.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC
43969]
gi|238718371|gb|EEQ10193.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC
43969]
Length = 386
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 122 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKIAYVT----FES 177
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 178 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 231
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 232 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 284
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + SPDGK +V S GG
Sbjct: 285 WEGS--QNQNADVSPDGKFLVLVSSNGG 310
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 159 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGT 212
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 213 KLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 266
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VSPDGK++V S+ G +++ D G
Sbjct: 267 RPQVYKVNING----GAPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLVTG 322
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 323 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGAV-LQLVSTDGRFKARL--PA 372
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 373 TDGQVKFPAWSP 384
>gi|421447586|ref|ZP_15896984.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|396074607|gb|EJI82894.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
Length = 430
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PDG+ +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQITDGRSNNTEPTWFPDGQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDGQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|406908193|gb|EKD48773.1| WD40 protein [uncultured bacterium]
Length = 197
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 20/140 (14%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
N+Y + +G + L LT GP D C +SPDG I FAS+R SG +Y + +G
Sbjct: 2 NIYEANPDGSD---LKALTSGPAYDAECAYSPDGSRIVFASNR----SGHMNLYTMAADG 54
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ ++++ + +A P+FSPDG I++ +DY + Q Y +I+ I + G
Sbjct: 55 SDIQQVTHT-TASYNGGPFFSPDGTQIIYRADY------------EKQHYLQIYCIDIHG 101
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+++T N + P W P
Sbjct: 102 MHTQQITMNGAVNWAPFWHP 121
Score = 62.4 bits (150), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----G 556
S ++ LT+ +A + SPDG IVF S R+G+ NLY M A+G + + T G
Sbjct: 11 SDLKALTSGPAYDAECAYSPDGSRIVFASNRSGHMNLYTMAADGSDIQQVTHTTASYNGG 70
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
P+ +SPDG I + +D + ++Y I +G +++ +G+ A P++
Sbjct: 71 PF------FSPDGTQIIYRADYEK--QHYLQIYCIDIHGMHTQQITMNGAVNWA--PFWH 120
Query: 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
P+GK + FT+ G + QY E++ I RLT N+ DG P++
Sbjct: 121 PNGKVVAFTTSLHGHA--------QY----ELYLINSKTGASYRLTHNASFDGLPSF 165
Score = 48.9 bits (115), Expect = 0.009, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y N DGS+ + + A+ + P +V+ S + S +++ ++ D D
Sbjct: 3 IYEANPDGSDLKALTSGPAYDAECAYSPDGSRIVFAS------NRSGHMNLYTMAADGSD 56
Query: 499 GVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRS--TRTGYKNLYIMDAEGGEGYGLHRLTE 555
++++T T N P SPDG I++R+ + Y +Y +D G +
Sbjct: 57 ----IQQVTHTTASYNGGPFFSPDGTQIIYRADYEKQHYLQIYCIDIHGMHTQQITMNGA 112
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
W+ W P+G+ +AF + G +E+YLI+ +L + S P F
Sbjct: 113 VNWAPF---WHPNGKVVAFTTSLH--GHAQYELYLINSKTGASYRLTHNASFD--GLPSF 165
Query: 616 SPDGKSIVFTSDYG 629
+ DG I +TS G
Sbjct: 166 NKDGTQITWTSKRG 179
>gi|383640849|ref|ZP_09953255.1| translocation protein TolB [Sphingomonas elodea ATCC 31461]
Length = 462
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 40/239 (16%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVW----DPVREAVVYTSGGPEFASESSEVDIISINVDD 496
+ +++ DG+N R + N S P A++Y S E D SI++ D
Sbjct: 212 LAIMDQDGANHR--FLTNGQSITLTPRLSPKLNAILYMS---------FERDRPSIHIYD 260
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
++ R L +N N P SPD ++++F G +LY + A GG RLT
Sbjct: 261 LNSRQD-RTLVSNLALNFAPHWSPDARYVLFSMAVGGNTDLYRVPASGGT---PERLTNS 316
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
P DT ++SPDG I F SDR G+ ++Y+++ +G+ ++ S GR P +S
Sbjct: 317 PGIDTGGSYSPDGSKIVFESDR----GGTQQLYVMNADGSNQHRI--SFGGGRYAAPAWS 370
Query: 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P G I FT GG + P ++L NS+ D P+W P
Sbjct: 371 PRGDQIAFTRMGGGAFRIGVMNPS---------------GGGEQLLTNSWGDEGPSWAP 414
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N +S I+L P SPK + I ++ F P +++ + +
Sbjct: 217 QDGANHRFLTNGQS----ITLT------PRLSPKLNAILYMSFERDRPSIHIYDLNSRQD 266
Query: 452 RQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
R + A F+ W P V+++ + D+ + RLT +
Sbjct: 267 RTLVSNLALNFAPHWSPDARYVLFS------MAVGGNTDLYRVPASG----GTPERLTNS 316
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ S SPDG IVF S R G + LY+M+A+G HR++ G WSP G
Sbjct: 317 PGIDTGGSYSPDGSKIVFESDRGGTQQLYVMNADGSN---QHRISFGGGRYAAPAWSPRG 373
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVF 624
+ IAF G G+F + +++P+G G + L S G G P ++P+G+ IVF
Sbjct: 374 DQIAFT----RMGGGAFRIGVMNPSGGGEQLLTNSWGDEG----PSWAPNGRVIVF 421
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ P +SP I++ S +++I D +
Sbjct: 212 LAIMDQDG--ANHRFLTNGQSITLTPRLSPKLNAILYMSFERDRPSIHIYDLNSRQD--- 266
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L + +WSPD ++ F+ G+ ++Y + +G +L + S G
Sbjct: 267 RTLVSNLALNFAPHWSPDARYVLFSMAV----GGNTDLYRVPASGGTPERL--TNSPGID 320
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
+SPDG IVF SD GG +++ + DGS+ R++
Sbjct: 321 TGGSYSPDGSKIVFESDRGGTQ--------------QLYVMNADGSNQHRISFGGGRYAA 366
Query: 671 PAWGPR 676
PAW PR
Sbjct: 367 PAWSPR 372
>gi|421889081|ref|ZP_16320141.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum K60-1]
gi|378965501|emb|CCF96889.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum K60-1]
Length = 432
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 126/304 (41%), Gaps = 56/304 (18%)
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF--- 438
S+VG H S + N Q+ L S P ISL S+SP G ++A+V F
Sbjct: 172 SKVGRHYQLQISDSDGANPQIAL---TSNEPIISL--------SWSPDGTKVAYVSFESR 220
Query: 439 -PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494
P VYV + + RR V N + W P V S I +N
Sbjct: 221 KPVVYV-HDLVTGRRAVISNQKGNNSAPAWSPDGRRVAVA------LSRDGNTQIYLVNA 273
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
D S +RRLT + + PS SPDG I F S R G +Y M +G + G R+T
Sbjct: 274 DG----SGLRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQIYRMPVDGEDAGGAQRVT 329
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLRKLIQSGSAGRAN 611
+T SPDG+ +A+ S G+F++Y L + + TGL S
Sbjct: 330 FKGGYNTSPRVSPDGKLLAYISRV----GGAFKLYVQDLSNGDVTGLTDTSYDES----- 380
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P F+ +GK I++ + GG S + + DG + L+ + + P
Sbjct: 381 -PSFAANGKFILYATRVGGRSV--------------LAAVSTDGRTRQTLSLPAGQVREP 425
Query: 672 AWGP 675
AWGP
Sbjct: 426 AWGP 429
>gi|145588463|ref|YP_001155060.1| translocation protein TolB [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046869|gb|ABP33496.1| TolB, N-terminal domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 436
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 52/306 (16%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + Q + + S P IS PS+SP G ++A+V
Sbjct: 169 STRLSYVIKDGKRYRLVISDADGQNIRNAMNSSEPIIS--------PSWSPDGKKVAYVS 220
Query: 438 F----PGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTSGGPEFASESSEVDI 489
F P +YV + + R++ N W P + + + S+ I
Sbjct: 221 FEDRKPVIYV--HELATGRRISLSNQKGNNSAPAWSPDGKKLAVS------LSKDGNTQI 272
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
IN D S + RLT + P S DG++I F S R G +Y M AEG + G
Sbjct: 273 YGINADG----SGLHRLTRGNTIDTEPQYSADGRYIYFTSDRGGNPQIYRMSAEGEQVEG 328
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R+T T SPDG+++A+ + N G G++ +Y+++ TG + + G++
Sbjct: 329 AKRVTFKQGFVTSPRISPDGKYLAYIA---NVG-GAYRLYILNL-ATGDSQALTDGTSDE 383
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+ P F+ +G+ +++++ GG + + +DG+ + L+ +
Sbjct: 384 S--PSFAANGRYVLYSTKVGGKRV--------------LAAVSVDGNSKQVLSIPGSDVR 427
Query: 670 TPAWGP 675
P+WGP
Sbjct: 428 QPSWGP 433
>gi|134080129|emb|CAK46110.1| unnamed protein product [Aspergillus niger]
Length = 719
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 138/588 (23%), Positives = 223/588 (37%), Gaps = 124/588 (21%)
Query: 167 SMKDKPILS--GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT---------PYG 215
S++D +LS G+ L YVST N T ++ +L +G + LT +
Sbjct: 172 SVEDIGVLSPNGKTLAYVSTQGNYTT------NIWVKDLASGQAQNLTDTASNRADNTWP 225
Query: 216 VADFSPAVSPSGKYTAVASYGNKGW----DGEVEMLSTDIYIFLTR-DGTQRVKIVENGG 270
F P+ SP G++ +S N W DG + + ++ R DG+ ++ G
Sbjct: 226 TGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEG 285
Query: 271 WPCWV-----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325
+ D + ++ + ED + + Q V+ + S+ T + A T
Sbjct: 286 YSLGTPQFSPDGKRIIYNNMTTEDTYGC--HGVSAQQEAVTAQIYSVDFATGSNVIAHTS 343
Query: 326 ATSP-------GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378
+ P GN+ I + H D F T+ +P+ S
Sbjct: 344 GSYPKVGQHYIGNSTNIGYLIKAGDYEGIHYTKPDFTHRSF--------NLTNMRDPWWS 395
Query: 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--------FPSFSPKG 430
PD S++ Y + N ++ L+ +D FP +
Sbjct: 396 PDGSKLVY----------------WVPNWTQQAAELKLWSYDTEWEYRYMDVFPMHNTVI 439
Query: 431 DRIA------------FVEFPGVYVVNSDGSNRRQVYF--------------KNAFSTVW 464
+RIA V VY D + +Y AF W
Sbjct: 440 NRIASTQKVLGSANGSLVHSSPVYTDVVDALDSYDIYNISNSTEVEWLEEGNSGAFQPSW 499
Query: 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
+P +V + G F S ++ I +G LT N+ FPS SPDG
Sbjct: 500 NPDGTELV-SGFGAWFVSRTTNTAKIYHAF--ANGTWHTN-LTDGSDNSGFPSWSPDGSA 555
Query: 525 IVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
IV+R + L+I++ G+ H+LT+G W D WSPDGE I F R+N
Sbjct: 556 IVYRKWSLATEAPLGLHILNFTTGK---THQLTDG-W-DNTPGWSPDGERIVFT--RNNN 608
Query: 582 GSGS---------FEMYLIHPNGTGLRKLIQSGSAGRANHPYFS-----PDGKSIVFTSD 627
+ S F++Y I P+G+ L ++ S S A + Y S DG+ I+++S
Sbjct: 609 WTESYGARWYADRFDIYTIRPDGSELTRVTDSLS-NDAQYVYPSLFLDFTDGR-IMWSSG 666
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G E +QPYG+I + DG++ +T +ED P + P
Sbjct: 667 QYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMP 714
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 441 VYVVNSDGSNRRQVYFK--NAFST--VWDPVREAVVYTSG--GPEFASESSEVDIISINV 494
+++ NSDG+N Q+ NAF W E +V+TS GP + D+ + V
Sbjct: 106 LWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGP------GQSDLYRVRV 159
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRL 553
D S + L +SP+GK + + ST+ Y N+++ D G+ L
Sbjct: 160 DG----SGLETLAATDSVEDIGVLSPNGKTLAYVSTQGNYTTNIWVKDLASGQAQNLTDT 215
Query: 554 TEGPWSDTMC------NWSPDGEWIAFASDRDNPGSG-----------SFEMYLIHPNGT 596
+T +WSPDGEWI F+SDR+ +G + +Y + P+G+
Sbjct: 216 ASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGS 275
Query: 597 GLRKLI-QSGSAGRANHPYFSPDGKSIVF 624
R +I Q G + P FSPDGK I++
Sbjct: 276 DFRTVIRQEGYS--LGTPQFSPDGKRIIY 302
>gi|261414610|ref|YP_003248293.1| TolB domain-containing protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789594|ref|YP_005820717.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371066|gb|ACX73811.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302325965|gb|ADL25166.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 424
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 24/162 (14%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
N PS SP ++F S R G +Y A G +G + R+T + +WSP+G+
Sbjct: 277 NQVSPSWSPFASEVLFTSDRGGSPQVY---AVGKDGTDVRRITYMGHYNERASWSPEGDR 333
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
I + S D G +Y +GT + +L + +AG HP +SPDGK I F SD GG
Sbjct: 334 IVYTSMDD----GKMNIYTCALDGTDIIQL--TSNAGNNEHPTWSPDGKLIAFASDRGG- 386
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
YQ I+ ++ DGS + R+T S E+ +P W
Sbjct: 387 ---------NYQ----IYIMRKDGSGVTRITNGS-ENTSPTW 414
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGG 477
PS+SP + F P VY V DG++ R++ + ++ W P + +VYTS
Sbjct: 281 PSWSPFASEVLFTSDRGGSPQVYAVGKDGTDVRRITYMGHYNERASWSPEGDRIVYTS-- 338
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +++I + +D D + +LT+N NN P+ SPDGK I F S R G +
Sbjct: 339 ----MDDGKMNIYTCALDGTD----IIQLTSNAGNNEHPTWSPDGKLIAFASDRGGNYQI 390
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
YIM +G G+ R+T G +T WS
Sbjct: 391 YIMRKDGS---GVTRITNGS-ENTSPTWS 415
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 38/238 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
V + + DG +RRQ+ ++ + VW + +VY + F + + I+ +
Sbjct: 171 VVISDYDGFSRRQITRDSSINMMPVWQKGNKGLVYVN----FRKQRPNLYAITFGGKETP 226
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
L T K P+V+P ++F T LY D + G L
Sbjct: 227 -------LFTQFKQTFSPAVNPKTGELLFSVTEGAKTELYRGDMKTGSAQKFLHLKSNQV 279
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
S + WSP + F SDR GS ++Y + +GT +R++ G +SP+
Sbjct: 280 SPS---WSPFASEVLFTSDR----GGSPQVYAVGKDGTDVRRITYMGHYNE--RASWSPE 330
Query: 619 GKSIVFTS-DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G IV+TS D G ++ I+ LDG+D+ +LT N+ + P W P
Sbjct: 331 GDRIVYTSMDDGKMN---------------IYTCALDGTDIIQLTSNAGNNEHPTWSP 373
>gi|226942085|ref|YP_002797159.1| TolB [Laribacter hongkongensis HLHK9]
gi|226717012|gb|ACO76150.1| TolB [Laribacter hongkongensis HLHK9]
Length = 308
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 119/297 (40%), Gaps = 75/297 (25%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG + L K PL P +SP G R+A+V F P VYV N + G+ R
Sbjct: 66 DGAGEQTLLRSKEPLMS----------PVWSPDGSRVAYVSFETKKPVVYVHNVATGARR 115
Query: 452 RQVYFKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
FK + S W P R AV T G I + D RRLT
Sbjct: 116 AVANFKGSNSAPAWSPDGTRLAVALTLSG--------NTQIYLVGADG----GTPRRLTQ 163
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP 567
+ + P+ +PDG I+F S R G +Y M A GG RLT EG ++ + SP
Sbjct: 164 SQGIDTEPAFTPDGSRILFTSDRAGGPQIYSMPASGGPA---TRLTYEGNYNVSPA-VSP 219
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH---------PYFSPD 618
DG+ AF + G R ++Q + +AN+ P F+P+
Sbjct: 220 DGKSFAF----------------VRREGGRYRVMVQQFGSSQANYVSDTQFDESPSFAPN 263
Query: 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GK I+F S+ GG G ++ + DG RL S + P WGP
Sbjct: 264 GKMILFASEQGG--------------RGVLYTVTADGLTKTRLGA-SGDVMEPDWGP 305
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 40/255 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD SRV Y E + + N+ + ++ F+ S P++SP G
Sbjct: 81 MSPVWSPDGSRVAYVSF------ETKKPVVYVHNVATGARRAVANFKGSNSAPAWSPDGT 134
Query: 432 RIAF-VEFPG---VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
R+A + G +Y+V +DG R++ T + P +++TS GGP+ S
Sbjct: 135 RLAVALTLSGNTQIYLVGADGGTPRRLTQSQGIDTEPAFTPDGSRILFTSDRAGGPQIYS 194
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ G A RLT G N P+VSPDGK F G + +
Sbjct: 195 MPAS------------GGPAT-RLTYEGNYNVSPAVSPDGKSFAFVRREGGRYRVMVQQF 241
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G D +++P+G+ I FAS++ G +Y + +G +L
Sbjct: 242 ----GSSQANYVSDTQFDESPSFAPNGKMILFASEQGGRGV----LYTVTADGLTKTRL- 292
Query: 603 QSGSAGRANHPYFSP 617
G++G P + P
Sbjct: 293 --GASGDVMEPDWGP 305
>gi|118574588|sp|Q2Y5H0.2|TOLB_NITMU RecName: Full=Protein TolB; Flags: Precursor
Length = 437
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 61/270 (22%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G R+A+V F P VYV R+ V F+ + S W P + AVV +
Sbjct: 206 PAWSPDGTRLAYVSFENKKPVVYVQTLATRTRKAVANFRGSNSAPAWSPDGRKLAVVLSV 265
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I IN D ++RLT + + PS SPDG++I+F S R G
Sbjct: 266 MGGS--------QIFLINSDG----GGLQRLTQSSGIDTEPSFSPDGRYIIFTSDRGGSP 313
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M GG RLT EG + + +SPDG+ F IH +
Sbjct: 314 QIYRMPVTGGVSKVAERLTFEGSY-NVSPRYSPDGKGFTF----------------IHRS 356
Query: 595 GTGLRKLIQSGSAGRA---------NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
G IQ + G+ P F+P+G+ +++ ++ G
Sbjct: 357 GDRFNVAIQDFATGQVRLLTDSRFDESPSFAPNGRMVLYATEIRG--------------R 402
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + + DG ++L+ + + PAWGP
Sbjct: 403 GILSAVSSDGRTRQQLSTQTGDIREPAWGP 432
>gi|422007889|ref|ZP_16354874.1| translocation protein TolB [Providencia rettgeri Dmel1]
gi|414096024|gb|EKT57683.1| translocation protein TolB [Providencia rettgeri Dmel1]
Length = 430
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA++ ++P + V + DG N+ V+ + S W P E + Y + F S
Sbjct: 166 RIAYIVVNKGGQYPYELRVSDYDGFNQFTVHRSPEPLMSPAWSPDGEKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GSSALVIQTLST------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y I+ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKININGGSPERVS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + SPDG +V S GG Q+ + K L ++++ LT
Sbjct: 329 WEGTQNQDAD--VSPDGTFLVMVSSGGG---------QQH-----VAKQDLATNNVEFLT 372
Query: 663 QNSFEDGTPAWGP 675
+ +F D TP+ P
Sbjct: 373 K-TFLDETPSIAP 384
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD ++ Y T E G++ L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGEKLAY------VTFESGSSALVIQTLSTGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I IN++ + R++ G N VSPDG ++V S+ G +++ D
Sbjct: 311 RPQIYKINING----GSPERVSWEGTQNQDADVSPDGTFLVMVSSGGGQQHVAKQDLATN 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 N---VEFLTK-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|339481743|ref|YP_004693529.1| Protein tolB [Nitrosomonas sp. Is79A3]
gi|338803888|gb|AEJ00130.1| Protein tolB [Nitrosomonas sp. Is79A3]
Length = 449
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G ++A+V F P VYV RR V FK + S W P + AVV T
Sbjct: 218 PAWSPDGSQLAYVSFENKKPIVYVQKLATRERRAVASFKGSNSAPAWSPDGKKLAVVLTG 277
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I IN D S ++RL+ + + P+ SPDG++I+F S R G
Sbjct: 278 QGGS--------QIFLINADG----SGLQRLSRSSGIDTEPNFSPDGRYILFTSDRGGSP 325
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M E RLT EG + + ++S DG+ F +N + +
Sbjct: 326 QIYRMPVTDTETSNAERLTFEGSY-NVSPDYSQDGKSFTFIHRNNN-------QFNVAVQ 377
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G R++ ++ P F+P+GK I++ ++ G +G + + D
Sbjct: 378 EVGSRQVQILTNSKFDESPSFAPNGKMILYATEIDG--------------HGILSAVSRD 423
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + L+ + + PAWGP
Sbjct: 424 GQTRQHLSVQTGDIREPAWGP 444
>gi|219753666|emb|CAB60199.2| P100GA2 protein [Haemonchus contortus]
Length = 825
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 33/193 (17%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
E DI +N + V++LT NA +SPDGK I F S RTG L+ M+ +G
Sbjct: 557 EFDIFMVN----KYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGT 612
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS----------------FEMY 589
LH++T+ D C +SPDG+ + F + R E+Y
Sbjct: 613 N---LHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIY 669
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
++ +G L+++ G A A PY+ PD K I+F+S+Y +SA+ Q+ + ++
Sbjct: 670 VVDVDGKNLKQVTNFGVASWA--PYYLPDNKRIIFSSNY-NMSAK------QFGSFA-LY 719
Query: 650 KIKLDGSDLKRLT 662
I DG+ L+R+T
Sbjct: 720 VINEDGTGLERVT 732
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 37/176 (21%)
Query: 511 KNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
KN+ + S +SPDGK IV+ S ++G +L+I D G +LT+ D ++SP
Sbjct: 172 KNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITDINGALKI---QLTKKKGYDGGASFSP 228
Query: 568 DGEWIAFASDR----------------DNPGSGSFEMYLIHPN-----GTGLRKLIQSGS 606
DG+ I F + R D + E+Y++ N GT + L +
Sbjct: 229 DGKKIVFHASRPKTNEEIAIYDRLLKNDLVATSKMELYVMEANTVCGKGTDEKPLFKQPR 288
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G PY+ D K I+F+S+ + P++Y ++ + DG+ L+R+T
Sbjct: 289 GGLDWTPYYHTDNKRIIFSSNMNS------TKPNEYH----LYIVNEDGTGLERVT 334
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 454 VYFKNAFSTVWDPVREAVVYTS------GGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
++ N + V D + + VY S G + S + + + + D++G ++ LT
Sbjct: 157 IFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITDINGALKIQ-LT 215
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTR--------------------TGYKNLYIMDAE--GG 545
+ S SPDGK IVF ++R T LY+M+A G
Sbjct: 216 KKKGYDGGASFSPDGKKIVFHASRPKTNEEIAIYDRLLKNDLVATSKMELYVMEANTVCG 275
Query: 546 EGYGLHRLTEGPWSDTMCNWSP----DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
+G L + P +W+P D + I F+S+ ++ + +Y+++ +GTGL +
Sbjct: 276 KGTDEKPLFKQPRGG--LDWTPYYHTDNKRIIFSSNMNSTKPNEYHLYIVNEDGTGLER- 332
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ G+ P FS DGK +V++S+ G
Sbjct: 333 VTFGNGYFNAFPVFSHDGKKVVWSSNRG 360
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ +LT+ P + SPDG+ IAF S R +G E++ ++ +GT L ++ + G
Sbjct: 570 VKQLTDEPGYNAEAVLSPDGKTIAFTSIR----TGDLELWTMNTDGTNLHQVTKE--YGY 623
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP---YG-------EIFKIKLDGSDLK 659
+FSPDGK +VF + E +YQ YG EI+ + +DG +LK
Sbjct: 624 DGGCFFSPDGKRLVFRASRPKTQKEK----EKYQKLLDYGLVEPTLTEIYVVDVDGKNLK 679
Query: 660 RLTQNSFEDGTPAWGPRFI 678
++T G +W P ++
Sbjct: 680 QVTNF----GVASWAPYYL 694
>gi|82703827|ref|YP_413393.1| translocation protein TolB [Nitrosospira multiformis ATCC 25196]
gi|82411892|gb|ABB76001.1| TolB-like protein [Nitrosospira multiformis ATCC 25196]
Length = 441
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 61/270 (22%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G R+A+V F P VYV R+ V F+ + S W P + AVV +
Sbjct: 210 PAWSPDGTRLAYVSFENKKPVVYVQTLATRTRKAVANFRGSNSAPAWSPDGRKLAVVLSV 269
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I IN D ++RLT + + PS SPDG++I+F S R G
Sbjct: 270 MGGS--------QIFLINSDG----GGLQRLTQSSGIDTEPSFSPDGRYIIFTSDRGGSP 317
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M GG RLT EG + + +SPDG+ F IH +
Sbjct: 318 QIYRMPVTGGVSKVAERLTFEGSY-NVSPRYSPDGKGFTF----------------IHRS 360
Query: 595 GTGLRKLIQSGSAGRA---------NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
G IQ + G+ P F+P+G+ +++ ++ G
Sbjct: 361 GDRFNVAIQDFATGQVRLLTDSRFDESPSFAPNGRMVLYATEIRG--------------R 406
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + + DG ++L+ + + PAWGP
Sbjct: 407 GILSAVSSDGRTRQQLSTQTGDIREPAWGP 436
>gi|1335976|gb|AAB01192.1| apical gut membrane polyprotein [Haemonchus contortus]
Length = 822
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 33/193 (17%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
E DI +N + V++LT NA +SPDGK I F S RTG L+ M+ +G
Sbjct: 552 EFDIFMVN----KYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGT 607
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS----------------FEMY 589
LH++T+ D C +SPDG+ + F + R E+Y
Sbjct: 608 N---LHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIY 664
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
++ +G L+++ G A A PY+ PD K I+F+S+Y +SA+ Q+ + ++
Sbjct: 665 VVDVDGKNLKQVTNFGVASWA--PYYLPDNKRIIFSSNY-NMSAK------QFGSFA-LY 714
Query: 650 KIKLDGSDLKRLT 662
I DG+ L+R+T
Sbjct: 715 VINEDGTGLERVT 727
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 32/171 (18%)
Query: 511 KNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
KN+ + S +SPDGK IV+ S ++G +L+I D G +LT+ D ++SP
Sbjct: 172 KNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITDINGALKI---QLTKAKGYDGGASFSP 228
Query: 568 DGEWIAFASDR----------------DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
DGE I F + R D E+Y+++ +G R + + G
Sbjct: 229 DGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNADGIDKRSVFKQPRGGLNW 288
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
PY+ PD K I+F+S+ + P ++ ++ + DG+ L+R+T
Sbjct: 289 TPYYHPDNKRIIFSSNTNS------TKPSEFH----LYIVNEDGTGLERVT 329
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 37/206 (17%)
Query: 454 VYFKNAFSTVWDPVREAVVYTS------GGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
++ N + V D + + VY S G + S + + + + D++G ++
Sbjct: 157 IFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITDINGALKIQLTK 216
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKN--------------------LYIMDAEGGEG 547
G + S SPDG+ IVF ++R K+ LY+M+A+G +
Sbjct: 217 AKGYDGG-ASFSPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNADGIDK 275
Query: 548 YGLHRLTEGPWSDTMCNWSP----DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
+ + G NW+P D + I F+S+ ++ F +Y+++ +GTGL + +
Sbjct: 276 RSVFKQPRGG-----LNWTPYYHPDNKRIIFSSNTNSTKPSEFHLYIVNEDGTGLER-VT 329
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYG 629
GS P FS DGK +V++S+ G
Sbjct: 330 FGSGYFNAFPVFSHDGKKVVWSSNRG 355
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ +LT+ P + SPDG+ IAF S R +G E++ ++ +GT L ++ + G
Sbjct: 565 VKQLTDEPGYNAEAVLSPDGKTIAFTSIR----TGDLELWTMNTDGTNLHQVTKE--YGY 618
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP---YG-------EIFKIKLDGSDLK 659
+FSPDGK +VF + E +YQ YG EI+ + +DG +LK
Sbjct: 619 DGGCFFSPDGKRLVFRASRPKTQKEK----EKYQKLLDYGLVEPTLTEIYVVDVDGKNLK 674
Query: 660 RLTQNSFEDGTPAWGPRFI 678
++T G +W P ++
Sbjct: 675 QVTNF----GVASWAPYYL 689
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 48/201 (23%)
Query: 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR---FDGSFPSFSPKGDR 432
FISPD ++ Y ++++ G+ L + +I L I L + +DG SFSP G++
Sbjct: 181 FISPDGKKIVY------TSKQSGDLDLWITDINGALK-IQLTKAKGYDGG-ASFSPDGEK 232
Query: 433 IAF------------------------VEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV- 467
I F + +YV+N+DG ++R V+ + W P
Sbjct: 233 IVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNADGIDKRSVFKQPRGGLNWTPYY 292
Query: 468 ---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
+ ++++S +++ SE + +N D G R +G NAFP S DGK
Sbjct: 293 HPDNKRIIFSSNTN--STKPSEFHLYIVNED---GTGLERVTFGSGYFNAFPVFSHDGKK 347
Query: 525 IVFR----STRTGYKNLYIMD 541
+V+ ST+ G NL+I D
Sbjct: 348 VVWSSNRGSTKKGDLNLFIAD 368
>gi|429089984|ref|ZP_19152716.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
universalis NCTC 9529]
gi|426509787|emb|CCK17828.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
universalis NCTC 9529]
Length = 431
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGGAQ--------------NIAKLDLVTGGVQTLS 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -STFLDETPSLAP 385
>gi|345298392|ref|YP_004827750.1| protein tolB [Enterobacter asburiae LF7a]
gi|345092329|gb|AEN63965.1| Protein tolB [Enterobacter asburiae LF7a]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSAQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQIYKVNVNGGAPQRIS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + + S DGK +V S GG
Sbjct: 329 WEGT--QNQNADVSSDGKFMVMVSSNGG 354
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +NV+ A +R++ G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQIYKVNVNG----GAPQRISWEGTQNQNADVSSDGKFMVMVSSNGGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|218921784|emb|CAW30773.1| P100-GA [Haemonchus contortus]
Length = 746
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 29/176 (16%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
V++LT NA +SPDGK I F S RTG L+ M+ +G LH++T+ D
Sbjct: 547 VKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGTN---LHQVTKEYGYDGG 603
Query: 563 CNWSPDGEWIAFASDRDNPGSGS----------------FEMYLIHPNGTGLRKLIQSGS 606
C +SPDG+ + F + R E+Y++ +G L+++ G
Sbjct: 604 CFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVDGKNLKQVTNFGV 663
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
A A PY+ PD K I+F+S+Y +SA+ Q+ + ++ I DG+ L+R+T
Sbjct: 664 ASWA--PYYLPDNKRIIFSSNY-NMSAK------QFGSFA-LYVINEDGTGLERVT 709
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ +LT+ P + SPDG+ IAF S R +G E++ ++ +GT L ++ + G
Sbjct: 547 VKQLTDEPGYNAEAVLSPDGKTIAFTSIR----TGDLELWTMNTDGTNLHQVTKE--YGY 600
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP---YG-------EIFKIKLDGSDLK 659
+FSPDGK +VF + E +YQ YG EI+ + +DG +LK
Sbjct: 601 DGGCFFSPDGKRLVFRASRPKTQKEK----EKYQKLLDYGLVEPTLTEIYVVDVDGKNLK 656
Query: 660 RLTQNSFEDGTPAWGPRFI 678
++T G +W P ++
Sbjct: 657 QVTNF----GVASWAPYYL 671
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 454 VYFKNAFSTVWDPVREAVVYTS------GGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
++ N + V D + + VY S G + S + + + + D++G ++
Sbjct: 134 IFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITDINGALKIQLTK 193
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTR-TGYKNLYIMDAEGGEGYGLHRLTEGPW--SDTMC- 563
G + S SPDG+ IVF ++R TG + I D + E ++T+C
Sbjct: 194 AKGYDGG-ASFSPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVATKKMELSVMKANTVCG 252
Query: 564 ----------------NWSP----DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
+W+P D + I F+S+ ++ S + +Y+++ +GTGL + +
Sbjct: 253 NVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHLYIVNEDGTGLER-VT 311
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYG 629
GS P FS DGK +V++S+ G
Sbjct: 312 FGSGYFNAFPVFSHDGKKVVWSSNRG 337
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Query: 511 KNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
KN+ + S +SPDGK IV S ++G +L+I D G +LT+ D ++SP
Sbjct: 149 KNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITDINGALKI---QLTKAKGYDGGASFSP 205
Query: 568 DGEWIAFASDRDNPGSGSFEMY----------------------LIHPNGTGLRKLIQSG 605
DGE I F + R G ++Y + N TG R L
Sbjct: 206 DGEKIVFHASRP-TGKDKIDIYDHLLKNNLVATKKMELSVMKANTVCGNVTGERILFNRE 264
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
PY+ PD K I+F+S+ + ++Y ++ + DG+ L+R+T
Sbjct: 265 RGVLDWTPYYHPDNKRIIFSSNMNSTKS------NEYH----LYIVNEDGTGLERVT 311
>gi|345304084|ref|YP_004825986.1| surface antigen (D15) [Rhodothermus marinus SG0.5JP17-172]
gi|345113317|gb|AEN74149.1| surface antigen (D15) [Rhodothermus marinus SG0.5JP17-172]
Length = 1028
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 77/305 (25%)
Query: 372 HLNPFISPDSSRVGYHKCRGGSTRE----DGNNQLLLENIKSPL--PDISLFRFDGSFPS 425
+L P +SPD V + R T + D +L + S P RF S S
Sbjct: 297 NLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASNPHFDAIRFINSSGS 356
Query: 426 FSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
+SP G R AF+ F + G+N +W+ S
Sbjct: 357 WSPDGQRFAFITF-------ARGNNE---------IAIWN----------------LRKS 384
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
E++ V GV A+ L + SPDG+ I F G +LY++D E
Sbjct: 385 ELE----RRIAVKGVGAIHNL----------AWSPDGRTIAFSGLSGGISDLYLLDLETN 430
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS-------GSFEMYLIHPNGTGL 598
+ + +LT+ ++D WSPDG IAF SDR G+ G + L+ TG
Sbjct: 431 Q---VRKLTDDRYADLQPAWSPDGRTIAFVSDRGPDGTDFEILRYGHERLALLDLE-TGK 486
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
++++ G+ +P FSPDG+S+ F S++ G + +I+++ L +
Sbjct: 487 VRVLRPFRNGQQINPQFSPDGRSLYFISNHDG--------------FKDIYRMDLTTGAV 532
Query: 659 KRLTQ 663
R+T+
Sbjct: 533 YRITR 537
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 30/176 (17%)
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLT---EGPWSDTM--- 562
G+ N P++SPDG+++ F S R + +L++ DAE G+ L RL+ P D +
Sbjct: 294 GEINLAPALSPDGRYVAFLSERDLFTIDLFVADAETGK--VLRRLSSSASNPHFDAIRFI 351
Query: 563 ---CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
+WSPDG+ AF + G+ E+ + + + L + I G ++ +SPDG
Sbjct: 352 NSSGSWSPDGQRFAFITF----ARGNNEIAIWNLRKSELERRIAVKGVGAIHNLAWSPDG 407
Query: 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
++I F+ GGIS +++ + L+ + +++LT + + D PAW P
Sbjct: 408 RTIAFSGLSGGIS--------------DLYLLDLETNQVRKLTDDRYADLQPAWSP 449
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 45/297 (15%)
Query: 290 DWISVYK-VILPQTGLVSTESVSIQRVTPPGLHA----FTPATSPGNNKFIAVATRRPTS 344
+WI K LP + + ++V P L A PA SP + +++A + R
Sbjct: 260 EWIQAVKHTYLPLLKDRTPPEQAGRKVLAPDLDAGEINLAPALSP-DGRYVAFLSERDLF 318
Query: 345 SYRHIELFDLVKNKFIELTRFVSPKTH-HLNP--FI------SPDSSRVGYHKCRGGSTR 395
+ I+LF L R S ++ H + FI SPD R + T
Sbjct: 319 T---IDLFVADAETGKVLRRLSSSASNPHFDAIRFINSSGSWSPDGQRFAF------ITF 369
Query: 396 EDGNNQLLLENI-KSPLPDISLFRFDGSFP--SFSPKGDRIAFVEFPG----VYVVNSDG 448
GNN++ + N+ KS L + G+ ++SP G IAF G +Y+++ +
Sbjct: 370 ARGNNEIAIWNLRKSELERRIAVKGVGAIHNLAWSPDGRTIAFSGLSGGISDLYLLDLET 429
Query: 449 SNRRQVYFKNA--FSTVWDPVREAVVYTSG-GPEFASESSEVDIISIN------VDDVDG 499
+ R++ W P + + S GP+ ++ +I+ +D G
Sbjct: 430 NQVRKLTDDRYADLQPAWSPDGRTIAFVSDRGPD----GTDFEILRYGHERLALLDLETG 485
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
V R NG+ P SPDG+ + F S G+K++Y MD G Y + RL G
Sbjct: 486 KVRVLRPFRNGQQIN-PQFSPDGRSLYFISNHDGFKDIYRMDLTTGAVYRITRLQTG 541
>gi|299067719|emb|CBJ38928.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum CMR15]
Length = 435
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 110/262 (41%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
PS+SP G ++A+V F P VYV + + RR V N + W P V
Sbjct: 206 PSWSPDGTKVAYVSFESRKPVVYVHDLI-TGRRAVISNQKGNNSAPAWSPDGRRVAVA-- 262
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S I +N D S +RRLT + + PS SPDG+ I F S R G
Sbjct: 263 ----LSRDGNTQIYQVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQ 314
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHP 593
+Y M EG + R+T +T SPDG+ +A+ S G+F++Y L +
Sbjct: 315 IYRMPVEGEDAGSAQRVTFKGGYNTSPRVSPDGKLLAYISRV----GGAFKLYVQDLSNG 370
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+ TGL S P F+ +GK I++ + GG S + +
Sbjct: 371 DVTGLTDTSYDES------PSFAANGKFILYATRVGGRSV--------------LAAVST 410
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ + PAWGP
Sbjct: 411 DGRTRQILSLQAGTVREPAWGP 432
>gi|393762348|ref|ZP_10350975.1| peptidase S41 [Alishewanella agri BL06]
gi|392606583|gb|EIW89467.1| peptidase S41 [Alishewanella agri BL06]
Length = 1082
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
SA R+LT++ P SPDG WI F + ++Y++ A GG RLT P +D
Sbjct: 54 SAPRQLTSHPAAEFAPKFSPDGNWIAFSAAYDNNTDVYVIPATGGAA---KRLTWHPGAD 110
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T+ WSPDG + FAS+R+ S S ++Y + +G +KL+ + A S DGK
Sbjct: 111 TVNGWSPDGSKVLFASNREVANSRSNQLYQVAVSGGYEQKLMPA----VAFEGELSADGK 166
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + + S H+ I+ + L+ L+++ Q + + P W
Sbjct: 167 KLAYRPNNLAYSGSSGWRLHRGGSTPPIWILDLEQEKLEKVPQPNANNLNPFW 219
Score = 42.4 bits (98), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G +LT P ++ +SPDG WIAF++ DN + ++Y+I G ++L
Sbjct: 52 DGSAPRQLTSHPAAEFAPKFSPDGNWIAFSAAYDN----NTDVYVIPATGGAAKRLTWHP 107
Query: 606 SAGRANHPYFSPDGKSIVFTSD 627
A N +SPDG ++F S+
Sbjct: 108 GADTVNG--WSPDGSKVLFASN 127
>gi|348618477|ref|ZP_08885001.1| Protein TolB precursor [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347816202|emb|CCD29757.1| Protein TolB precursor [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 442
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 38/259 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G+++A+V F P VYV RR V + N + W P + +
Sbjct: 212 PAWSPNGNQLAYVSFEHKKPVVYVQYLTSGQRRVVSNQKGNNSAPAWSPDGKRLALA--- 268
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S S I +N D S +RRL+ N + P SPDG+WI F S R G +
Sbjct: 269 ---LSLSGNTQIYLVNADG----SGLRRLSNNSHIDTEPQFSPDGQWIYFTSDRGGMPQI 321
Query: 538 YIMDAEG-GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y M ++G G R+T +T SPDG +A+ S G++ + +
Sbjct: 322 YRMSSQGEARAGGAQRVTFNGGYNTTPRISPDGRLLAYISR----AGGAYRLLIRDLQSG 377
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L Q+ R P F+ + + I++ + G S I + DG
Sbjct: 378 ETAALTQT---QRDEAPSFAANSQYILYATHLNGRSVLAI--------------VSTDGR 420
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L+ + + P+WGP
Sbjct: 421 IRQTLSVSGGDVREPSWGP 439
>gi|296103329|ref|YP_003613475.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392978170|ref|YP_006476758.1| translocation protein TolB [Enterobacter cloacae subsp. dissolvens
SDM]
gi|401762838|ref|YP_006577845.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|295057788|gb|ADF62526.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392324103|gb|AFM59056.1| translocation protein TolB [Enterobacter cloacae subsp. dissolvens
SDM]
gi|400174372|gb|AFP69221.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFLVKRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQIYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + S DGK +V S GG
Sbjct: 329 WEGS--QNQNADVSSDGKFMVMVSSNGG 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQIYKVNING----GAPQRITWEGSQNQNADVSSDGKFMVMVSSNGGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|329295948|ref|ZP_08253284.1| translocation protein TolB [Plautia stali symbiont]
Length = 431
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A+R++ + ++N P+ SPDG + F ++TG NLY++D
Sbjct: 223 GKSALVVQTL------ANGAIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVIDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ ++T+G ++ T W PD + +A+ SD+ +G+ ++Y ++ NG +++
Sbjct: 277 ASGQ---TRQVTDGRYNSTEPTWFPDSQTLAYTSDQ----AGAPQIYKVNVNGGTPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGK++V S GG + K L+ ++ +T
Sbjct: 330 WEGAQNQDAD--VSSDGKTMVMISSAGGAQ--------------HVAKQDLETGAVQTIT 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -DTFLDETPSLAP 385
>gi|17545454|ref|NP_518856.1| translocation protein TolB [Ralstonia solanacearum GMI1000]
gi|32699708|sp|Q8Y1F5.1|TOLB_RALSO RecName: Full=Protein TolB; Flags: Precursor
gi|17427746|emb|CAD14265.1| probable protein tolb precursor [Ralstonia solanacearum GMI1000]
Length = 432
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 110/262 (41%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P++SP G ++A+V F P VYV + S RR V N + W P V
Sbjct: 203 PAWSPDGTKVAYVSFESRKPVVYVHDLI-SGRRAVISNQKGNNSAPAWSPDGRRVAVA-- 259
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S I +N D S +RRLT + + PS SPDG+ I F S R G
Sbjct: 260 ----LSRDGNTQIYQVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQ 311
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHP 593
+Y M EG + R+T +T SPDG+ +A+ S G+F++Y L +
Sbjct: 312 IYRMPTEGEDAGSAQRVTFKGGYNTSPRVSPDGKLLAYISRV----GGAFKLYVQDLSNG 367
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+ TGL S P F+ +GK I++ + GG S + +
Sbjct: 368 DVTGLTDTSYDES------PSFAANGKFILYATRVGGRSV--------------LAAVST 407
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ + PAWGP
Sbjct: 408 DGRTRQILSLQAGTVREPAWGP 429
>gi|401676552|ref|ZP_10808536.1| translocation protein TolB [Enterobacter sp. SST3]
gi|400216236|gb|EJO47138.1| translocation protein TolB [Enterobacter sp. SST3]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFLVKRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQIYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + S DGK +V S GG
Sbjct: 329 WEGSQNQNSD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQIYKVNING----GAPQRITWEGSQNQNSDVSSDGKFMVMVSSNGGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|432873428|ref|ZP_20093055.1| protein tolB [Escherichia coli KTE147]
gi|431404674|gb|ELG87922.1| protein tolB [Escherichia coli KTE147]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG 354
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|73669137|ref|YP_305152.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str.
Fusaro]
gi|72396299|gb|AAZ70572.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str.
Fusaro]
Length = 615
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 461 STVWDPVREAVVYTSGGPE--FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
S +W P +VY +G E + E+SE+ I+ DG ++ LT++ N+ P
Sbjct: 234 SQIWAPDGSKIVYYAGKNESYYEDENSEIYIVK-----ADGTGRIQ-LTSDSANDNSPVF 287
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
SPDG IVF S + G ++++IMDA+G +LT P SD+ WSPDG+ IAF S+R
Sbjct: 288 SPDGSKIVFVSDKAGNEDIWIMDADGKNKV---QLTSDPASDSFPVWSPDGKKIAFWSNR 344
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 147/377 (38%), Gaps = 72/377 (19%)
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRG-GSTREDGNNQLLLENIKSPLPDISLFRF 419
+LT+ S NP SPD + + + G DG ++ L + K F
Sbjct: 34 KLTKVASNVALDSNPVWSPDGKEILFSRENGLYKVFSDGTGEMKLTSTKGK-------NF 86
Query: 420 DGSFPSFSPKGDRIAFVE---------FPGVYVVNSDGSNRRQ----VYFKNAFSTVWDP 466
+ ++SP G +I+++E ++++NS+G ++Q ++++ + W P
Sbjct: 87 TSDY-AWSPDGSKISYIENRYDTAAGPRSDLWIMNSNGEGKKQLLDTIWYRYYYIYTWFP 145
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
++Y E E+D N ++ + + ++SPD I
Sbjct: 146 TGSKILYAEIYEEIGGSYWEMDSDGSNKHNIGNMGIANGI----------ALSPDASKIA 195
Query: 527 FRSTRTGYKNLYIMDAEGGEG-----YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
+ + YI + G+ YGL +T S W+PDG I + + ++
Sbjct: 196 ICAHGPADVDYYIDVGKVGKDLTSFRYGL--ITHQTQSRQSQIWAPDGSKIVYYAGKNES 253
Query: 582 --GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ E+Y++ +GTG +L + + N P FSPDG IVF SD G
Sbjct: 254 YYEDENSEIYIVKADGTGRIQL--TSDSANDNSPVFSPDGSKIVFVSDKAGNE------- 304
Query: 640 HQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWL 699
+I+ + DG + +LT + D P W P ++ AF W
Sbjct: 305 -------DIWIMDADGKNKVQLTSDPASDSFPVWSP-----------DGKKIAF----WS 342
Query: 700 NETPNQRDWGAALEPEK 716
N N + LE EK
Sbjct: 343 NRGGNNNIYTLTLENEK 359
>gi|238785869|ref|ZP_04629837.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC
43970]
gi|238713239|gb|EEQ05283.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC
43970]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 ASGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + SPDGK +V S GG
Sbjct: 329 WEGS--QNQNADVSPDGKFLVLVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 257 KLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VSPDGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGAV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|85058864|ref|YP_454566.1| translocation protein TolB [Sodalis glossinidius str. 'morsitans']
gi|119371063|sp|Q2NUL4.1|TOLB_SODGM RecName: Full=Protein TolB; Flags: Precursor
gi|84779384|dbj|BAE74161.1| colicin import protein TolB [Sodalis glossinidius str. 'morsitans']
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 36/235 (15%)
Query: 443 VVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V + DG N+ V+ + S W P + Y + F S S + I +++
Sbjct: 184 VADYDGFNQTPVHRSPQPLMSPAWSPDGSKLAYVT----FESGRSALVIQTLDS------ 233
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
A+R++ + ++N P+ SPDG + F ++TG NLY+MD G+ + ++TEG ++
Sbjct: 234 GAIRQVASFPQHNGAPAFSPDGSKLAFVLSKTGNMNLYVMDLGSGQ---VRQVTEGRSNN 290
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T +W PD + +A+ SD+ G ++Y + NG ++L GS + + SPDGK
Sbjct: 291 TEPSWFPDSQTLAYTSDQ----GGRPQVYKTNINGGTPQRLSWEGS--QNQNADVSPDGK 344
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S G I K+ L + ++ LT ++F D TP+ P
Sbjct: 345 FLVMVSTNNGAQ--------------HIAKLDLATNAVQVLT-DTFLDETPSVAP 384
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + S + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLDSGAIRQVASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AFV +YV++ RQV + +T W P + + YTS +
Sbjct: 257 KLAFVLSKTGNMNLYVMDLGSGQVRQVTEGRSNNTEPSWFPDSQTLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ N++ +RL+ G N VSPDGK++V ST G +++ +D
Sbjct: 311 RPQVYKTNING----GTPQRLSWEGSQNQNADVSPDGKFLVMVSTNNGAQHIAKLDLATN 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + +++ + G GS + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSVAPNGTMVIYSATQ---GLGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ +P +SP
Sbjct: 417 TDGQVKNPAWSP 428
>gi|260597139|ref|YP_003209710.1| translocation protein TolB [Cronobacter turicensis z3032]
gi|260216316|emb|CBA29301.1| Protein tolB [Cronobacter turicensis z3032]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGGAQ--------------NIAKLDLVTGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|21228491|ref|NP_634413.1| hypothetical protein MM_2389 [Methanosarcina mazei Go1]
gi|20906975|gb|AAM32085.1| conserved protein [Methanosarcina mazei Go1]
Length = 771
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 25/216 (11%)
Query: 378 SPDSSRVGYHKC-RGGSTR-----EDGNNQLLLENIK--SPL---PDISLFRFDGSFPSF 426
SPD SR+ Y GS R DG+N+ ++ + S L PD S F+ ++
Sbjct: 29 SPDGSRIAYISSDHNGSDRLVTLNPDGSNEQIVASFAEISALAWAPDSSGMAFNAAYSED 88
Query: 427 SPKGDRIAFVEFPG-VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG--GPEFASE 483
G +A +E V++V G R+Q+ ++ S VW P ++Y+S G +E
Sbjct: 89 GQTGIYLADLESSEPVFLVR--GEIRQQI--QSWQSEVWSPDGSRILYSSNENGNSDTNE 144
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ DI S+N D + + +LT + + P SPDG I+F S RTG+ +++IM +
Sbjct: 145 NGNSDIYSVNTDGSEKI----QLTDDNSKDYSPCFSPDGSKIIFISDRTGHSSIWIMSSN 200
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
G + LTEG +W+P+G+ IAF+SD +
Sbjct: 201 GDKE---EELTEGFEGIHDFSWNPNGQKIAFSSDSN 233
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 519 SPDGKWIVFRS--TRTGYKNLYIMDAEGGEGY----GLHRLTEGPWSDTMCNWSPDGEWI 572
+PD + F + + G +Y+ D E E G R W + WSPDG I
Sbjct: 73 APDSSGMAFNAAYSEDGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEV--WSPDGSRI 130
Query: 573 AFASDR----DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
++S+ D +G+ ++Y ++ +G+ +L S + P FSPDG I+F SD
Sbjct: 131 LYSSNENGNSDTNENGNSDIYSVNTDGSEKIQLTDDNS--KDYSPCFSPDGSKIIFISDR 188
Query: 629 GGISA 633
G S+
Sbjct: 189 TGHSS 193
>gi|419911592|ref|ZP_14430063.1| translocation protein TolB [Escherichia coli KD1]
gi|388393269|gb|EIL54655.1| translocation protein TolB [Escherichia coli KD1]
Length = 430
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLYIMD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYIMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +Y+++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYIMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|365969589|ref|YP_004951150.1| TolB [Enterobacter cloacae EcWSU1]
gi|365748502|gb|AEW72729.1| TolB [Enterobacter cloacae EcWSU1]
Length = 431
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFLVKRSSQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N PS SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPSFSPDGTKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQIYKVNVNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + S DGK +V S GG
Sbjct: 330 WEGS--QNQNADVSSDGKFMVMVSSNGG 355
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPSFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPSWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQIYKVNVNG----GAPQRITWEGSQNQNADVSSDGKFMVMVSSNGGQQHIAKQDLVAG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G ++
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARI--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|224118944|ref|XP_002331342.1| predicted protein [Populus trichocarpa]
gi|222873375|gb|EEF10506.1| predicted protein [Populus trichocarpa]
Length = 53
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 42/77 (54%), Gaps = 31/77 (40%)
Query: 265 IVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT 324
+VE+GGWP WVDE + ++RVTPPGLHAFT
Sbjct: 8 VVEHGGWPSWVDELVI-------------------------------VERVTPPGLHAFT 36
Query: 325 PATSPGNNKFIAVATRR 341
PATSPGN KFIAVATRR
Sbjct: 37 PATSPGNKKFIAVATRR 53
>gi|323138231|ref|ZP_08073303.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis
sp. ATCC 49242]
gi|322396483|gb|EFX99012.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis
sp. ATCC 49242]
Length = 435
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSG 476
P FSP + ++ F P V ++N + S R V + FS + P + ++ +
Sbjct: 207 PRFSPSSLDVTYMAFNSDGEPKVLLMNIESSQREVVGNFPGMTFSPRFSPDGQKIIMS-- 264
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ S ++ ++++ RLT + PS SPDG I F S R G +
Sbjct: 265 ----LSQGSSTNLYTMDLRS----RTTTRLTDTSAIDTAPSFSPDGSRIAFESDRGGSQQ 316
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M A GGE R++ G + WSP G++IAF G+F + ++ +G+
Sbjct: 317 IYVMGAHGGEA---KRISFGGGRYSTPVWSPKGDYIAFTKQN----GGNFSIGVMKTDGS 369
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L + G N P ++P+G ++F + GG I + +G
Sbjct: 370 GERILTE----GFHNEGPTWAPNGLFLMFFRESGGAGGPKI---YMVDVFGR-------- 414
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++L+ T D PAWGP
Sbjct: 415 TELQVPTPGYASD--PAWGP 432
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 300 PQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK 358
P+ L++ ES + V PG+ F+P SP K I ++ +++ ++L +
Sbjct: 227 PKVLLMNIESSQREVVGNFPGM-TFSPRFSPDGQKIIMSLSQGSSTNLYTMDL------R 279
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR 418
TR P SPD SR+ + RGGS ++ IS
Sbjct: 280 SRTTTRLTDTSAIDTAPSFSPDGSRIAFESDRGGS-----QQIYVMGAHGGEAKRISFGG 334
Query: 419 FDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
S P +SPKGD IAF + G + V+ +DGS R
Sbjct: 335 GRYSTPVWSPKGDYIAFTKQNGGNFSIGVMKTDGSGER 372
>gi|302038650|ref|YP_003798972.1| protein TolB [Candidatus Nitrospira defluvii]
gi|300606714|emb|CBK43047.1| Protein TolB precursor [Candidatus Nitrospira defluvii]
Length = 443
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 127/306 (41%), Gaps = 68/306 (22%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
+++T G P SP + +FI R ++ + I++ +L K L VS +
Sbjct: 203 KQITADGFLNLMPRWSP-DRRFIVFTAYRSRNT-QDIDILELATGKRWTL---VSMAGLN 257
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGD 431
+ P +SPD + + + ++ +DGN+++ + ++ P G P++SP G
Sbjct: 258 ITPALSPDGNFLAF------ASSQDGNSEIYKLDTRTKTPQRLTVNQGGDLSPTWSPTGR 311
Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
IAF SD QV+ +A
Sbjct: 312 EIAF---------TSDRGGAPQVFIMSA-------------------------------- 330
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
DG S VRRLT G NA P+ SP G WI + RT + LY + +G
Sbjct: 331 ------DG-SNVRRLTYEGDYNAAPAWSPRGNWIAY-VCRTA-QRLYKICTVSPDGQKRV 381
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
++T GP D +WSPDG I F+S D G +Y++ +G GL ++ G+ +
Sbjct: 382 QVTTGPGIDDSPSWSPDGRHITFSSTVD----GKSHIYMVDTDGKGLERITFGGT--HNS 435
Query: 612 HPYFSP 617
P +SP
Sbjct: 436 SPSWSP 441
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTM 562
+RLT N + P+ SP G+ I F S R G ++IM A+G + RLT EG + +
Sbjct: 292 QRLTVNQGGDLSPTWSPTGREIAFTSDRGGAPQVFIMSADGSN---VRRLTYEGDY-NAA 347
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSP G WIA+ +++ + P+G +++ + G + P +SPDG+ I
Sbjct: 348 PAWSPRGNWIAYVC---RTAQRLYKICTVSPDGQ--KRVQVTTGPGIDDSPSWSPDGRHI 402
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F+S G S I+ + DG L+R+T + +P+W P
Sbjct: 403 TFSSTVDGKS--------------HIYMVDTDGKGLERITFGGTHNSSPSWSP 441
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 25/184 (13%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHR 552
V D DG +++T +G N P SPD ++IVF + R+ +++ I++ G+ + L
Sbjct: 194 VMDYDGYEP-KQITADGFLNLMPRWSPDRRFIVFTAYRSRNTQDIDILELATGKRWTLVS 252
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
+ + + SPDG ++AFAS +D G+ E+Y + ++L + + G
Sbjct: 253 MAGLNITPAL---SPDGNFLAFASSQD----GNSEIYKLDTRTKTPQRL--TVNQGGDLS 303
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
P +SP G+ I FTSD GG ++F + DGS+++RLT + PA
Sbjct: 304 PTWSPTGREIAFTSDRGGAP--------------QVFIMSADGSNVRRLTYEGDYNAAPA 349
Query: 673 WGPR 676
W PR
Sbjct: 350 WSPR 353
>gi|94311607|ref|YP_584817.1| translocation protein TolB [Cupriavidus metallidurans CH34]
gi|119371053|sp|Q1LJX8.1|TOLB_RALME RecName: Full=Protein TolB; Flags: Precursor
gi|93355459|gb|ABF09548.1| periplasmic protein [Cupriavidus metallidurans CH34]
Length = 446
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
P++SP G R+A+V F P VYV + R V + ++ W P + + +
Sbjct: 218 PAWSPDGRRVAYVSFEAKKPVVYVHDLATGKRVVVSNQKGNNSAPSWSPDGQHLAVS--- 274
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S I +N D S +RRLT + + P SPDG+ I F S R G +
Sbjct: 275 ---LSRDGNTQIYQVNADG----SGLRRLTRSSAIDTEPQFSPDGRSIYFTSDRGGAPQI 327
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G E R+T + SPDG+++A+ S SG F + L +
Sbjct: 328 YRMPASGEESGAAQRVTFKGSYNVSPRISPDGKYLAYISR-----SGGFRLQLQDLSNGD 382
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG S + + DG
Sbjct: 383 VTSLTDTTN---DESPSFAANGKYILYATRVGGRSV--------------LAAVSTDGRT 425
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S P+WGP
Sbjct: 426 KQVLSLQSGAVREPSWGP 443
>gi|34495564|ref|NP_899779.1| translocation protein TolB [Chromobacterium violaceum ATCC 12472]
gi|67461997|sp|Q7P1V3.1|TOLB_CHRVO RecName: Full=Protein TolB; Flags: Precursor
gi|34101419|gb|AAQ57788.1| TolB protein precursor [Chromobacterium violaceum ATCC 12472]
Length = 428
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 120/261 (45%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
PS+SP G IA+V F P V+V + RR V FK + S W P + AVV T+
Sbjct: 201 PSWSPDGRHIAYVSFASQKPVVWVQDLATGQRRAVANFKGSNSAPAWSPDGSKLAVVLTT 260
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G +S++ II + G A RRL NG + P+ SPDG + F S R+G
Sbjct: 261 SG------NSQIYII-----NAAGGPA-RRLMYNGGIDTEPAFSPDGSMVYFVSDRSGNP 308
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y + GG R+T EG + + SPDG+ + + +G+F + +
Sbjct: 309 QIYRVPVNGGNA---QRVTWEGAY-NVSPKLSPDGKTLVYIRR----SAGNFRV-MSQDL 359
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
T + + GS + P F+P+G+ ++++SD GG S ++ D
Sbjct: 360 ATNDSRQLSDGS--YSERPSFAPNGRMVLYSSDAGGQSV--------------LYAATAD 403
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
GS +L + + PAWGP
Sbjct: 404 GSSKVKLAVLNGDVQDPAWGP 424
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 56/278 (20%)
Query: 156 LDLNEVNGG---VISMKDKPILS------GEYLIYVS-THENPGTPRTSWAAVYSTELKT 205
L +++V+G I +PI+S G ++ YVS + P V+ +L T
Sbjct: 178 LQISDVDGQRSQTILRSTEPIISPSWSPDGRHIAYVSFASQKP--------VVWVQDLAT 229
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVA--SYGNKGWDGEVEMLSTDIYIFLTRDGTQRV 263
G R + + ++ +PA SP G AV + GN + IYI G R
Sbjct: 230 GQRRAVANFKGSNSAPAWSPDGSKLAVVLTTSGN-----------SQIYIINAAGGPAR- 277
Query: 264 KIVENGGW---PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
+++ NGG P + + ++ + + PQ V + QRVT G
Sbjct: 278 RLMYNGGIDTEPAFSPDGSMVYFVSDRSGN---------PQIYRVPVNGGNAQRVTWEGA 328
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
+ +P SP + + RR ++R + DL N +R +S ++ P +P+
Sbjct: 329 YNVSPKLSPDGKTLVYI--RRSAGNFRVMSQ-DLATND----SRQLSDGSYSERPSFAPN 381
Query: 381 SSRVGYHKCRGG-----STREDGNNQLLLENIKSPLPD 413
V Y GG + DG++++ L + + D
Sbjct: 382 GRMVLYSSDAGGQSVLYAATADGSSKVKLAVLNGDVQD 419
>gi|365838288|ref|ZP_09379638.1| Tol-Pal system beta propeller repeat protein TolB [Hafnia alvei
ATCC 51873]
gi|364560249|gb|EHM38194.1| Tol-Pal system beta propeller repeat protein TolB [Hafnia alvei
ATCC 51873]
Length = 431
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 223 GKSALVIQTLSN------GAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T+G ++T +W PD + +AF SD+ G ++Y ++ NG +L
Sbjct: 277 GSG---AIRQVTDGRSNNTEPSWFPDSQNLAFTSDQ----GGRPQIYKVNINGGAPERLT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V GG I K+ L GS+ ++
Sbjct: 330 WEGSQNQDGD--VSSDGKFLVMVGTSGGSQ--------------HITKLDL-GSNANQVL 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 TSTFLDETPSIAP 385
>gi|260219498|emb|CBA26343.1| Protein tolB [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 408
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RI++V G ++V ++DG N + + S W P G + A S
Sbjct: 146 RISYVTKAGPTYNLWVADADGENAQSALSSPEPIISPSWAP---------NGNQLAYVSF 196
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV + RRL + K +N+ P+ SPDG+ I +R G LY+MDA G
Sbjct: 197 EARKPVVYVHDV--ATGRRRLVASFKGSNSAPTWSPDGRSIALTLSRDGGSQLYVMDANG 254
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + P DT ++ DG+ I F SDR GS ++Y + G ++ S
Sbjct: 255 GE---PRRLMQSPAIDTEPVYTSDGKTIYFVSDR----GGSPQIYRVPAGGGSAERVTFS 307
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G G P SPDGK + + S G
Sbjct: 308 G--GYNISPALSPDGKWLAYVSRVNG 331
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 118/288 (40%), Gaps = 54/288 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
D + + + SP P IS PS++P G+++A+V F P VYV + RR
Sbjct: 163 DADGENAQSALSSPEPIIS--------PSWAPNGNQLAYVSFEARKPVVYVHDVATGRRR 214
Query: 453 QVY-FKNAFST-VWDPVREAVVYT---SGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
V FK + S W P ++ T GG + + V D +G RRL
Sbjct: 215 LVASFKGSNSAPTWSPDGRSIALTLSRDGGSQ------------LYVMDANG-GEPRRLM 261
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
+ + P + DGK I F S R G +Y + A GG R+T + SP
Sbjct: 262 QSPAIDTEPVYTSDGKTIYFVSDRGGSPQIYRVPAGGGSA---ERVTFSGGYNISPALSP 318
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
DG+W+A+ S R N G+F+++++ + + + +P FSP+ + I++
Sbjct: 319 DGKWLAYVS-RVN---GAFKLHVMDIVSGSVSAITDKAA---DENPSFSPNSRLIIYAIL 371
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G A + LDG RL + P WGP
Sbjct: 372 LQGKEA--------------LMTTTLDGRIKARLAGQGGDIREPDWGP 405
>gi|156934765|ref|YP_001438681.1| translocation protein TolB [Cronobacter sakazakii ATCC BAA-894]
gi|156533019|gb|ABU77845.1| hypothetical protein ESA_02605 [Cronobacter sakazakii ATCC BAA-894]
Length = 431
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 330 WEGSQNQDAD--ISSDGKFMVMVSSNGGAQ--------------NIAKLDLATGGVQTLS 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -STFLDETPSLAP 385
>gi|440288478|ref|YP_007341243.1| tol-pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048000|gb|AGB79058.1| tol-pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium strain FGI 57]
Length = 430
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D E G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|407976406|ref|ZP_11157305.1| translocation protein TolB [Nitratireductor indicus C115]
gi|407428017|gb|EKF40702.1| translocation protein TolB [Nitratireductor indicus C115]
Length = 437
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 48/286 (16%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG NQ L + +S I L P FSP I ++ + P VY++ + R
Sbjct: 191 QDGANQRFLTDGRS----IVLT------PRFSPTRQEITYMSYESGQPQVYLLQLETGQR 240
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
V + F+ + P + V+ + + S +D+ S N RLTT+
Sbjct: 241 ELVGNFPGMTFAPRFSPNGQKVIMSLLRDDGNSNIFAMDLRSRNTT---------RLTTS 291
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ PS SPDG IVF S R G +Y+M G +G R++ G + + WSP G
Sbjct: 292 NAIDTSPSYSPDGSQIVFTSDRGGRAQIYVM---GADGSNPQRISFGDGTYSTPVWSPRG 348
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ +AF G F++ ++ +G+G R L S P ++P+G+ I+F
Sbjct: 349 DLVAFTKQT----GGEFQIGVMRTDGSGERIL---SSGFLQEGPTWAPNGRVIMFFRQPA 401
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G S P +++ I L G + +++ +F PAW P
Sbjct: 402 G-SGGP-----------QLYSIDLTGRNEQKIPTANF-GSDPAWSP 434
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A +R T+G++ P SP + I + S +G +Y++ E G+
Sbjct: 186 LAIMDQDG--ANQRFLTDGRSIVLTPRFSPTRQEITYMSYESGQPQVYLLQLETGQ---R 240
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SP+G+ + + RD+ S F M L N T L + S
Sbjct: 241 ELVGNFPGMTFAPRFSPNGQKVIMSLLRDDGNSNIFAMDLRSRNTTRL-----TTSNAID 295
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVFTSD GG +I+ + DGS+ +R+ SF DGT
Sbjct: 296 TSPSYSPDGSQIVFTSDRGG--------------RAQIYVMGADGSNPQRI---SFGDGT 338
Query: 671 ---PAWGPR 676
P W PR
Sbjct: 339 YSTPVWSPR 347
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 30/203 (14%)
Query: 295 YKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFD 353
Y+ PQ L+ E+ + V PG+ F P SP K I R +S +I D
Sbjct: 223 YESGQPQVYLLQLETGQRELVGNFPGM-TFAPRFSPNGQKVIMSLLRDDGNS--NIFAMD 279
Query: 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD 413
L TR + +P SPD S++ + RGG Q+ + P
Sbjct: 280 LRSRN---TTRLTTSNAIDTSPSYSPDGSQIVFTSDRGGRA------QIYVMGADGSNPQ 330
Query: 414 ISLFRFDGSF--PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAF---STVW 464
F DG++ P +SP+GD +AF + G + V+ +DGS R + F W
Sbjct: 331 RISFG-DGTYSTPVWSPRGDLVAFTKQTGGEFQIGVMRTDGSGER--ILSSGFLQEGPTW 387
Query: 465 DPVREAVVY-----TSGGPEFAS 482
P +++ SGGP+ S
Sbjct: 388 APNGRVIMFFRQPAGSGGPQLYS 410
>gi|397170103|ref|ZP_10493529.1| peptidase S41 [Alishewanella aestuarii B11]
gi|396088309|gb|EJI85893.1| peptidase S41 [Alishewanella aestuarii B11]
Length = 1082
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
S+ R+LT + P SPDGKWI F ++ ++Y+M GG RLT P +D
Sbjct: 54 SSPRQLTNHPAAEFAPKFSPDGKWIAFSASYDNNTDVYLMPVSGGPA---QRLTWHPGAD 110
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
+ WSPDG + FAS+R+ S S ++Y + G KL+ + A S DGK
Sbjct: 111 IVNGWSPDGRKVLFASNREVANSRSNQLYQVAVTGGYEEKLMPA----VAFEGQLSADGK 166
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + + S H+ I+ + L+ + L+++ Q + + P W
Sbjct: 167 KLAYRPNNMAYSGSSGWRLHRGGSTPPIWILDLEQAQLEKVPQPNANNFNPFW 219
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G +LT P ++ +SPDG+WIAF++ DN + ++YL+ +G ++L
Sbjct: 52 DGSSPRQLTNHPAAEFAPKFSPDGKWIAFSASYDN----NTDVYLMPVSGGPAQRLTWHP 107
Query: 606 SAGRANHPYFSPDGKSIVFTSD 627
A N +SPDG+ ++F S+
Sbjct: 108 GADIVNG--WSPDGRKVLFASN 127
>gi|317491197|ref|ZP_07949633.1| tol-Pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920744|gb|EFV42067.1| tol-Pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 430
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTLSN------GAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T+G ++T +W PD + +AF SD+ G ++Y ++ NG +L
Sbjct: 276 GSG---AIRQVTDGRSNNTEPSWFPDSQNLAFTSDQ----GGRPQIYKVNINGGAPERLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V GG I K+ L GS+ ++
Sbjct: 329 WEGSQNQDGD--VSSDGKFLVMVGTSGGSQ--------------HITKLDL-GSNANQVL 371
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 372 TSTFLDETPSIAP 384
>gi|429107936|ref|ZP_19169805.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 681]
gi|429109514|ref|ZP_19171284.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 507]
gi|426294659|emb|CCJ95918.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 681]
gi|426310671|emb|CCJ97397.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 507]
Length = 430
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--ISSDGKFMVMVSSNGGAQ--------------NIAKLDLATGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|389841689|ref|YP_006343773.1| translocation protein TolB [Cronobacter sakazakii ES15]
gi|417790984|ref|ZP_12438489.1| translocation protein TolB [Cronobacter sakazakii E899]
gi|429114650|ref|ZP_19175568.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 701]
gi|429120110|ref|ZP_19180795.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 680]
gi|449308979|ref|YP_007441335.1| translocation protein TolB [Cronobacter sakazakii SP291]
gi|333954948|gb|EGL72745.1| translocation protein TolB [Cronobacter sakazakii E899]
gi|387852165|gb|AFK00263.1| translocation protein TolB [Cronobacter sakazakii ES15]
gi|426317779|emb|CCK01681.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 701]
gi|426325356|emb|CCK11532.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 680]
gi|449099012|gb|AGE87046.1| translocation protein TolB [Cronobacter sakazakii SP291]
Length = 430
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--ISSDGKFMVMVSSNGGAQ--------------NIAKLDLATGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|309786419|ref|ZP_07681045.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 1617]
gi|308925813|gb|EFP71294.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 1617]
Length = 405
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 141 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 196
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 197 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 250
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 251 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 303
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 304 WEGSQNQDAD--VSSDGKFMVMVSSNGG 329
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 178 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 231
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 232 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 285
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 286 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 341
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 342 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 391
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 392 TDGQVKFPAWSP 403
>gi|226227348|ref|YP_002761454.1| hypothetical protein GAU_1942 [Gemmatimonas aurantiaca T-27]
gi|226090539|dbj|BAH38984.1| hypothetical protein GAU_1942 [Gemmatimonas aurantiaca T-27]
Length = 420
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSF-PSFSP 428
H P +SPD V Y RG T D L +++ P I++ R S SFSP
Sbjct: 228 EHTTPIVSPDGRTVVY--ARGSDTGTD----LYQQSMDGGTPRRITVGRGRASAQASFSP 281
Query: 429 KGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV-------WDPVREAVVYTSGG 477
G R+AF+ P VY+ + DG+N ++ AF W P V + S
Sbjct: 282 DGQRLAFMSDRSGHPEVYISDLDGTNT-ELLTAAAFGDRDYRAGPDWSPDGRLVAFQS-- 338
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
I++IN+ D +V+++T +G+N+ PS +PD + +VF STR+G + L
Sbjct: 339 ----RNGGTFQIMTINLRD----QSVKQVTNDGRNDD-PSWAPDSRHVVFTSTRSGTRQL 389
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
+I+D E G +LT GP + WSP
Sbjct: 390 WIVDTETGR---TRQLTFGP-ETRLSAWSP 415
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 57/283 (20%)
Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
R+AF V+ ++SDG+N V + S W P +VY S +D +
Sbjct: 158 RVAFTRGGRVWTIDSDGANVTAVT-PSGMSPQWLPSGRGIVY-----------SVLDGVR 205
Query: 492 INVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVF-RSTRTGYKNLYIMDAEGGEGY 548
+ D + +R+ + G + P VSPDG+ +V+ R + TG +LY +GG
Sbjct: 206 NPIMLTDLSTGAQRVLASAQGVEHTTPIVSPDGRTVVYARGSDTG-TDLYQQSMDGGT-- 262
Query: 549 GLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R+T G + ++SPDG+ +AF SDR SG E+Y+ +GT +L+ + +
Sbjct: 263 -PRRITVGRGRASAQASFSPDGQRLAFMSDR----SGHPEVYISDLDGTNT-ELLTAAAF 316
Query: 608 GRANH---PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G ++ P +SPDG+ + F S GG +I I L +K++T +
Sbjct: 317 GDRDYRAGPDWSPDGRLVAFQSRNGGTF--------------QIMTINLRDQSVKQVTND 362
Query: 665 SFEDGTPAWGP--------------RFIRPVDVEEVKNEQCAF 693
D P+W P R + VD E + Q F
Sbjct: 363 GRND-DPSWAPDSRHVVFTSTRSGTRQLWIVDTETGRTRQLTF 404
>gi|126664003|ref|ZP_01734997.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38]
gi|126623952|gb|EAZ94646.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38]
Length = 518
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 34/201 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D++G + ++LT +A VSPDGK I F S R+G +Y MD +G L
Sbjct: 140 IYIADLNG-NITKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGDLEIYTMDIDGT---NLK 195
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------------GSFEMYLIHPNG 595
++T G D C +S D + I F S R E+Y + +G
Sbjct: 196 QITYGLGYDGGCFFSHDSKKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYTCNIDG 255
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG-EIFKIKLD 654
+ L+++ G A A PYF P K I+F+S++ H + Y ++F I +
Sbjct: 256 SDLKQITHLGKANWA--PYFHPSDKKIIFSSNH-----------HSTRGYDFQLFMIDIT 302
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +L+++T S + P + P
Sbjct: 303 GENLQQITWESEFNAFPMFSP 323
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 427 SPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGGPEF 480
SP G +IAF +Y ++ DG+N +Q+ + + + + +V+ S P+
Sbjct: 166 SPDGKKIAFTSIRSGDLEIYTMDIDGTNLKQITYGLGYDGGCFFSHDSKKIVFRSSRPKT 225
Query: 481 ASES--------------SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
A E SE++I + N+D D ++++T GK N P P K I+
Sbjct: 226 AEEVKDYKDLLAQNLVAPSEMEIYTCNIDGSD----LKQITHLGKANWAPYFHPSDKKII 281
Query: 527 F----RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
F STR L+++D G L ++T + +SPDG+ + F+S+R
Sbjct: 282 FSSNHHSTRGYDFQLFMIDITGE---NLQQITWESEFNAFPMFSPDGKKLVFSSNR 334
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 441 VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y N DGS+ +Q+ K ++ + P + ++++S ++ +I I +++
Sbjct: 248 IYTCNIDGSDLKQITHLGKANWAPYFHPSDKKIIFSSNHHSTRGYDFQLFMIDITGENL- 306
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK----NLYIMD 541
+++T + NAFP SPDGK +VF S R K N++I D
Sbjct: 307 -----QQITWESEFNAFPMFSPDGKKLVFSSNRMQSKPRETNVFIAD 348
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 42/253 (16%)
Query: 176 GEYLIYVSTHEN----PGTPR-----TSWAA-----VYSTELKTGLTRRLTPYGVADFSP 221
G++++Y STH + P P+ WA +Y +L +T++LT D
Sbjct: 104 GKHILYASTHASDHACPAPPKPIEGKYLWAIYPEFDIYIADLNGNITKQLTNTPGYDAEA 163
Query: 222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWP--CWVDEST 279
VSP GK A S + G++E+ + DI DGT +I G+ C+ +
Sbjct: 164 VVSPDGKKIAFTSIRS----GDLEIYTMDI------DGTNLKQITYGLGYDGGCFFSHDS 213
Query: 280 ---LFFHRKSEEDDWISVYKVILPQTGLVSTE---------SVSIQRVTPPGLHAFTPAT 327
+F + + + + YK +L Q + +E ++++T G + P
Sbjct: 214 KKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYTCNIDGSDLKQITHLGKANWAPYF 273
Query: 328 SPGNNKFIAVATRRPTSSYR-HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY 386
P + K I + T Y + + D+ ++T + P SPD ++ +
Sbjct: 274 HPSDKKIIFSSNHHSTRGYDFQLFMIDITGENLQQITW---ESEFNAFPMFSPDGKKLVF 330
Query: 387 HKCRGGSTREDGN 399
R S + N
Sbjct: 331 SSNRMQSKPRETN 343
>gi|119383438|ref|YP_914494.1| translocation protein TolB [Paracoccus denitrificans PD1222]
gi|119373205|gb|ABL68798.1| TolB, N-terminal domain protein [Paracoccus denitrificans PD1222]
Length = 461
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 40/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN----AFSTVWDPVREAVVYTS 475
P FSP G R+ + FP +++ + RQ+ +FS + P +VY+
Sbjct: 231 PRFSPDGSRLLYTSYATGFPQAMMMDVNSLAARQLGAGQQGTMSFSPRFSPDGRWIVYS- 289
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
++ DI ++ A R LT PS SPDGK IVF S R+G
Sbjct: 290 -----LEQNGNTDIYQMDA----ATGAQRALTNAPSIETSPSYSPDGKQIVFESDRSGTP 340
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G
Sbjct: 341 QLYVMGANGGE---PRRISFGEGRYGTPVWSPRGDMIAFTRQV----GGKFHIGVMRTDG 393
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ + L +S P ++P+G+ ++FT G +P + + + G
Sbjct: 394 SEEKMLTES---FLDEGPTWAPNGRVVMFTRVTPGGDGQP-----------RLHSVDITG 439
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+++ + N P WGP
Sbjct: 440 RNMRPVKINGAAS-DPDWGP 458
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + V+ LT + P SPDG +++ S TG+ +MD L
Sbjct: 208 IGIMDYDGAN-VKWLTDDSTLVLKPRFSPDGSRLLYTSYATGFPQAMMMDVNSLAARQLG 266
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+G S + +SPDG WI ++ +++ G+ ++Y + R L + S
Sbjct: 267 AGQQGTMSFS-PRFSPDGRWIVYSLEQN----GNTDIYQMDAATGAQRALTNAPSI--ET 319
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK IVF SD G TP +++ + +G + +R++ GTP
Sbjct: 320 SPSYSPDGKQIVFESDRSG-------TP-------QLYVMGANGGEPRRISFGEGRYGTP 365
Query: 672 AWGPR 676
W PR
Sbjct: 366 VWSPR 370
>gi|417680859|ref|ZP_12330241.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
3594-74]
gi|420334854|ref|ZP_14836474.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-315]
gi|420351501|ref|ZP_14852691.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
4444-74]
gi|421681397|ref|ZP_16121224.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1485-80]
gi|332097645|gb|EGJ02620.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
3594-74]
gi|391267445|gb|EIQ26381.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-315]
gi|391287729|gb|EIQ46245.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
4444-74]
gi|404341603|gb|EJZ68008.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1485-80]
Length = 405
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 141 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 196
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 197 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 250
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 251 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 303
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 304 WEGSQNQDAD--VSSDGKFMVMVSSNGG 329
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 178 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 231
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 232 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 285
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 286 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 341
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 342 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 391
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 392 TDGQVKFPAWSP 403
>gi|332716443|ref|YP_004443909.1| protein tolB [Agrobacterium sp. H13-3]
gi|325063128|gb|ADY66818.1| protein tolB precursor [Agrobacterium sp. H13-3]
Length = 443
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 216 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 273 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSFSPDGQRVAFESDRGGRQQI 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVMNADGS---GQQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 379 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 423 NEQLIKTPTFAS-DPAWSP 440
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 177 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 229
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 230 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 282
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P FSPDG+ + F SD GG +I+
Sbjct: 283 TMDLRSRTTTRLTNTSAIDTA--PSFSPDGQRVAFESDRGGRQ--------------QIY 326
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 327 VMNADGSGQQRI---SFGDGSYSTPVWSPR 353
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 254 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSF 306
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSF--PSFSPKGDRIA 434
SPD RV + RG G Q+ + N S IS DGS+ P +SP+GD IA
Sbjct: 307 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRISF--GDGSYSTPVWSPRGDLIA 358
Query: 435 FVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
F + G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 359 FTKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 416
>gi|417275429|ref|ZP_12062766.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2303]
gi|425271447|ref|ZP_18662947.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW15901]
gi|425282106|ref|ZP_18673217.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW00353]
gi|386242082|gb|EII78995.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2303]
gi|408197733|gb|EKI22985.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW15901]
gi|408205577|gb|EKI30437.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW00353]
Length = 430
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPEGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SP+ S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPEGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|254473216|ref|ZP_05086614.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp.
JE062]
gi|211957937|gb|EEA93139.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp.
JE062]
Length = 454
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG+ +VF S R G + LY+M++ G G R++ GP + WSP G+ IAF
Sbjct: 314 PSFSPDGRQVVFESDRGGSQQLYVMNSNGS---GAERISFGPGQYSTPVWSPRGDLIAFT 370
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + +I P+G G R L + G N P +SP+G+ + F D G
Sbjct: 371 KVH----QGRFMIGVIRPDGKGERILTE----GYHNEGPAWSPNGRVLTFFRDTVGEQGG 422
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P +++ + L G + ++L Q PAW P
Sbjct: 423 P-----------QVWTVDLTGYN-EQLVQTPNFASDPAWSP 451
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR LT P SP + + + S G +Y+ + E G+
Sbjct: 203 LAIMDQDGAN-VRYLTRGDDLVLTPRFSPVSQEVTYMSYVGGNPQVYLFNIETGQ---RE 258
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L P +SPDG+ + + + GS + +YL+ + R + +A
Sbjct: 259 VLGNFPGMTFAPRFSPDGQKVIMSLQQ---GSNA-NLYLM--DLRTRRTTRLTNTAAIDT 312
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG+ +VF SD GG +++ + +GS +R++ + TP
Sbjct: 313 SPSFSPDGRQVVFESDRGGSQ--------------QLYVMNSNGSGAERISFGPGQYSTP 358
Query: 672 AWGPR 676
W PR
Sbjct: 359 VWSPR 363
>gi|335033168|ref|ZP_08526537.1| translocation protein [Agrobacterium sp. ATCC 31749]
gi|333795345|gb|EGL66673.1| translocation protein [Agrobacterium sp. ATCC 31749]
Length = 443
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 216 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 272
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 273 ---LQQDGNANIYTMDLRS----RTTTRLTNTAAIDTAPSYSPDGQRVAFESDRGGRQQI 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVMNADGS---GQQRVSFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 379 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 423 NEQLIKTPTFAS-DPAWSP 440
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 177 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 229
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 230 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 282
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P +SPDG+ + F SD GG +I+
Sbjct: 283 TMDLRSRTTTRLTNTAAIDTA--PSYSPDGQRVAFESDRGGRQ--------------QIY 326
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 327 VMNADGSGQQRV---SFGDGSYSTPVWSPR 353
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + + +I DL LT + T P
Sbjct: 254 PGM-TFSPRFSPDGQKVIMSLQQDGNA---NIYTMDLRSRTTTRLTNTAAIDTA---PSY 306
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAF 435
SPD RV + RG G Q+ + N F DGS+ P +SP+GD IAF
Sbjct: 307 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRVSFG-DGSYSTPVWSPRGDLIAF 359
Query: 436 VEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
+ G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 360 TKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 416
>gi|417671454|ref|ZP_12320945.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 155-74]
gi|420345960|ref|ZP_14847387.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
965-58]
gi|332096497|gb|EGJ01493.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 155-74]
gi|391275241|gb|EIQ34033.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
965-58]
Length = 405
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 141 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 196
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 197 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 250
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 251 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 303
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 304 WEGSQNQDAD--VSSDGKFMVMVSSNGG 329
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 178 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 231
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 232 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 285
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 286 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 341
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 342 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 391
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 392 TDGQVKFPAWSP 403
>gi|374333018|ref|YP_005083202.1| translocation protein TolB [Pseudovibrio sp. FO-BEG1]
gi|359345806|gb|AEV39180.1| translocation protein TolB [Pseudovibrio sp. FO-BEG1]
Length = 454
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG+ +VF S R G + LY+M++ G G R++ GP + WSP G+ IAF
Sbjct: 314 PSFSPDGRQVVFESDRGGSQQLYVMNSNGS---GAERISFGPGQYSTPVWSPRGDLIAFT 370
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + +I P+G G R L + G N P +SP+G+ + F D G
Sbjct: 371 KVH----QGRFMIGVIRPDGKGERILTE----GYHNEGPAWSPNGRVLTFFRDTVGEQGG 422
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P +++ + L G + ++L Q PAW P
Sbjct: 423 P-----------QVWTVDLTGYN-EQLVQTPNFASDPAWSP 451
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR LT P SP + + + S G +Y+ + E G+
Sbjct: 203 LAIMDQDGAN-VRYLTRGDDLVLTPRFSPVSQEVTYMSYVGGNPQVYLFNIETGQ---RE 258
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L P +SPDG+ + + + GS + +YL+ + R + +A
Sbjct: 259 VLGNFPGMTFAPRFSPDGQKVIMSLQQ---GSNA-NLYLM--DLRTRRTTRLTNTAAIDT 312
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG+ +VF SD GG +++ + +GS +R++ + TP
Sbjct: 313 SPSFSPDGRQVVFESDRGGSQ--------------QLYVMNSNGSGAERISFGPGQYSTP 358
Query: 672 AWGPR 676
W PR
Sbjct: 359 VWSPR 363
>gi|414574944|ref|ZP_11432152.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3233-85]
gi|425114099|ref|ZP_18515922.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0566]
gi|391288560|gb|EIQ47061.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3233-85]
gi|408572298|gb|EKK48218.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0566]
Length = 405
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 141 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 196
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 197 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 250
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 251 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 303
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 304 WEGSQNQDAD--VSSDGKFMVMVSSNGG 329
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 178 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 231
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 232 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 285
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 286 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 341
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 342 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 391
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 392 TDGQVKFPAWSP 403
>gi|223673842|pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 145 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 200
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 201 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 255 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 307
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 308 WEGSQNQDAD--VSSDGKFMVMVSSNGG 333
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 182 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 289
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 290 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 346 ---GVQVLSS-TFLDETPSLAPNGTMVLYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 395
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 396 TDGQVKFPAWSP 407
>gi|170769037|ref|ZP_02903490.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia
albertii TW07627]
gi|170122109|gb|EDS91040.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia
albertii TW07627]
Length = 430
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|223673843|pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
gi|223673844|pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
gi|223673845|pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 145 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 200
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 201 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 255 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 307
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 308 WEGSQNQDAD--VSSDGKFMVMVSSNGG 333
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 182 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 289
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 290 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 346 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 395
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 396 TDGQVKFPAWSP 407
>gi|452963078|gb|EME68164.1| translocation protein TolB [Magnetospirillum sp. SO-1]
Length = 447
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 40/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY+ N D R + + F+ + P V+++
Sbjct: 215 PRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESLGNFPGMTFAPRFSPDGNKVIFS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ES +I +N+ R+LT + PS SPDG+ IVF S R G + +
Sbjct: 272 ---MAESGNTEIYEMNLL----TRQKRQLTYSPAIETAPSYSPDGQQIVFESDRGGGQQI 324
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM G +G R++ G WSP G+ IAF + G F + ++ +G+G
Sbjct: 325 YIM---GADGSNQQRISFGDGRYATPVWSPRGDLIAFTKQK----GGQFFIGVMRTDGSG 377
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI---FKIKLD 654
R L + P ++P+G+ + F + +P + G++ + I L
Sbjct: 378 ERLLAE---GFLVEGPTWAPNGRVLSFFRE----------SPSDERGRGQVVRLYTIDLT 424
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + +R+ + PAW P
Sbjct: 425 GVN-ERVLLTPIDGSDPAWSP 444
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 497 VDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+D S R T+G P SP + I + S G +YI + + G L
Sbjct: 195 MDQDSENHRFLTDGSELVLTPRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESLGNF-- 252
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +SPDG + F+ SG+ E+Y ++ R+L S + A P +
Sbjct: 253 -PGMTFAPRFSPDGNKVIFSMAE----SGNTEIYEMNLLTRQKRQLTYSPAIETA--PSY 305
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG---TPA 672
SPDG+ IVF SD GG +I+ + DGS+ +R+ SF DG TP
Sbjct: 306 SPDGQQIVFESDRGGGQ--------------QIYIMGADGSNQQRI---SFGDGRYATPV 348
Query: 673 WGPR 676
W PR
Sbjct: 349 WSPR 352
>gi|145579533|pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
gi|145579535|pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
gi|145579537|pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
gi|145579539|pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 145 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 200
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 201 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 255 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 307
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 308 WEGSQNQDAD--VSSDGKFMVMVSSNGG 333
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 182 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 289
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 290 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 346 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 395
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 396 TDGQVKFPAWSP 407
>gi|159185873|ref|NP_356906.2| translocation protein TolB [Agrobacterium fabrum str. C58]
gi|32699707|sp|Q8U9L4.2|TOLB_AGRT5 RecName: Full=Protein TolB; Flags: Precursor
gi|159141007|gb|AAK89691.2| tolB protein [Agrobacterium fabrum str. C58]
Length = 435
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 208 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 264
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 265 ---LQQDGNANIYTMDLRS----RTTTRLTNTAAIDTAPSYSPDGQRVAFESDRGGRQQI 317
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 318 YVMNADGS---GQQRVSFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 370
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 371 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 414
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 415 NEQLIKTPTFAS-DPAWSP 432
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 169 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 221
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 222 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 274
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P +SPDG+ + F SD GG +I+
Sbjct: 275 TMDLRSRTTTRLTNTAAIDTA--PSYSPDGQRVAFESDRGGRQ--------------QIY 318
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 319 VMNADGSGQQRV---SFGDGSYSTPVWSPR 345
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + + +I DL LT + T P
Sbjct: 246 PGM-TFSPRFSPDGQKVIMSLQQDGNA---NIYTMDLRSRTTTRLTNTAAIDTA---PSY 298
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAF 435
SPD RV + RG G Q+ + N F DGS+ P +SP+GD IAF
Sbjct: 299 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRVSFG-DGSYSTPVWSPRGDLIAF 351
Query: 436 VEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
+ G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 352 TKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 408
>gi|238765245|ref|ZP_04626174.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC
33638]
gi|238696517|gb|EEP89305.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC
33638]
Length = 430
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + SPDGK + S GG I K+ L ++ LT
Sbjct: 329 WEGS--QNQNADVSPDGKFLALVSSNGGAQ--------------HIAKMDLVTGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSIAP 384
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 257 KLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VSPDGK++ S+ G +++ MD G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQNADVSPDGKFLALVSSNGGAQHIAKMDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGAV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|123443146|ref|YP_001007120.1| translocation protein TolB [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160929|ref|YP_004297506.1| translocation protein TolB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386309290|ref|YP_006005346.1| tolb protein precursor, periplasmic protein involved in the
TonB-independent uptake of group A colicins [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418243308|ref|ZP_12869793.1| translocation protein TolB [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420257727|ref|ZP_14760479.1| translocation protein TolB [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433550365|ref|ZP_20506409.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Yersinia
enterocolitica IP 10393]
gi|166229994|sp|A1JRK8.1|TOLB_YERE8 RecName: Full=Protein TolB; Flags: Precursor
gi|122090107|emb|CAL12970.1| TolB colicin import protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604836|emb|CBY26334.1| tolb protein precursor, periplasmic protein involved in the
TonB-independent uptake of group A colicins [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325665159|gb|ADZ41803.1| translocation protein TolB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330864065|emb|CBX74142.1| protein tolB [Yersinia enterocolitica W22703]
gi|351777241|gb|EHB19473.1| translocation protein TolB [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404514804|gb|EKA28587.1| translocation protein TolB [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431789500|emb|CCO69449.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Yersinia
enterocolitica IP 10393]
Length = 430
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + SPDGK +V S GG
Sbjct: 329 WEGS--QNQNADVSPDGKFLVLVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 257 KLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VSPDGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGAV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|417826626|ref|ZP_12473202.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri J1713]
gi|420318939|ref|ZP_14820795.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2850-71]
gi|335576826|gb|EGM63064.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri J1713]
gi|391254232|gb|EIQ13394.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2850-71]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|430805387|ref|ZP_19432502.1| translocation protein TolB [Cupriavidus sp. HMR-1]
gi|429502424|gb|ELA00735.1| translocation protein TolB [Cupriavidus sp. HMR-1]
Length = 446
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGG 477
P++SP G R+A+V F P VYV + R V + ++ W P + + +
Sbjct: 218 PAWSPDGRRVAYVSFEARKPVVYVHDLATGKRVVVSNQKGNNSAPSWSPDGQHLAVS--- 274
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S I +N D S +RRLT + + P SPDG+ I F S R G +
Sbjct: 275 ---LSRDGNTQIYQVNADG----SGLRRLTRSSAIDTEPQFSPDGRSIYFTSDRGGAPQI 327
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G E R+T + SPDG+++A+ S SG F + L +
Sbjct: 328 YRMPASGEESGAAQRVTFKGSYNVSPRISPDGKYLAYISR-----SGGFRLQLQDLSNGD 382
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG S + + DG
Sbjct: 383 VTSLTDTTN---DESPSFAANGKYILYATRVGGRSV--------------LAAVSTDGRT 425
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S P+WGP
Sbjct: 426 KQVLSLQSGAVREPSWGP 443
>gi|418406040|ref|ZP_12979360.1| translocation protein TolB [Agrobacterium tumefaciens 5A]
gi|358007953|gb|EHK00276.1| translocation protein TolB [Agrobacterium tumefaciens 5A]
Length = 435
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 208 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 264
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 265 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSFSPDGQRVAFESDRGGRQQI 317
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 318 YVMNADGS---GQQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 370
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 371 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 414
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 415 NEQLIKTPTFAS-DPAWSP 432
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 169 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 221
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 222 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 274
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P FSPDG+ + F SD GG +I+
Sbjct: 275 TMDLRSRTTTRLTNTSAIDTA--PSFSPDGQRVAFESDRGGRQ--------------QIY 318
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 319 VMNADGSGQQRI---SFGDGSYSTPVWSPR 345
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 246 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSF 298
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSF--PSFSPKGDRIA 434
SPD RV + RG G Q+ + N S IS DGS+ P +SP+GD IA
Sbjct: 299 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRISF--GDGSYSTPVWSPRGDLIA 350
Query: 435 FVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
F + G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 351 FTKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 408
>gi|82776018|ref|YP_402365.1| translocation protein TolB [Shigella dysenteriae Sd197]
gi|119371061|sp|Q32II1.1|TOLB_SHIDS RecName: Full=Protein TolB; Flags: Precursor
gi|81240166|gb|ABB60876.1| periplasmic protein [Shigella dysenteriae Sd197]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|188534420|ref|YP_001908217.1| translocation protein TolB [Erwinia tasmaniensis Et1/99]
gi|226705882|sp|B2VBQ7.1|TOLB_ERWT9 RecName: Full=Protein TolB; Flags: Precursor
gi|188029462|emb|CAO97339.1| Protein TolB (translocation of group A colicins) [Erwinia
tasmaniensis Et1/99]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P V Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKVAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N PS SPDG + F ++TG N+Y+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNIYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++ T W PD + +A+ SD+ +G ++Y I NG +++
Sbjct: 276 GSGQ---ISQITDGRYNSTEPTWFPDSQSLAYTSDQ----AGRPQIYKIGVNGGTAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGKS+V S G + + L +++LT
Sbjct: 329 WEGAQNQDAD--VSSDGKSMVMISTNSGAQ--------------HVARQDLVTGAVQKLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S+V Y T E G + L+++ + + + ++ F PSFSP G
Sbjct: 203 MSPAWSPDGSKVAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ Q+ N+ W P +++ YTS ++
Sbjct: 257 KLAFALSKTGSLNIYVMDIGSGQISQITDGRYNSTEPTWFPDSQSLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I V+ +R+T G N VS DGK +V ST +G +++ D G
Sbjct: 311 RPQIYKIGVNG----GTAQRITWEGAQNQDADVSSDGKSMVMISTNSGAQHVARQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ +LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQKLTD-TFLDETPSLAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|432371483|ref|ZP_19614538.1| protein tolB [Escherichia coli KTE11]
gi|430899645|gb|ELC21741.1| protein tolB [Escherichia coli KTE11]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|340028026|ref|ZP_08664089.1| translocation protein TolB [Paracoccus sp. TRP]
Length = 442
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 40/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN----AFSTVWDPVREAVVYTS 475
P FSP G R+ + FP V++ + R + +FS + P +VY+
Sbjct: 212 PRFSPDGSRLLYTSYATGFPQAMVMDVNTLATRSLGSAQQGTMSFSPRFSPDGRWIVYS- 270
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
++ DI ++ A R LT PS SPDG+ IVF S R+G
Sbjct: 271 -----LEKNGNTDIYQMDA----ATGAQRALTNAPSIETSPSYSPDGRQIVFESDRSGTP 321
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LYIM A GGE R++ G WSP G+ IAF SG F + ++ +G
Sbjct: 322 QLYIMGANGGE---PKRISFGEGRYGTPVWSPRGDMIAFTRQV----SGKFHIGVMRTDG 374
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ + L +S P ++P+G+ ++FT G EP + + + G
Sbjct: 375 SEEKMLTES---FLDEGPTWAPNGRVVMFTRVTPGGDGEP-----------RLHSVDITG 420
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+++ + N P WGP
Sbjct: 421 RNMRPVKINGAAS-DPDWGP 439
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + V+ LT + P SPDG +++ S TG+ +MD L
Sbjct: 189 IGIMDYDGAN-VKWLTDDSTLVLKPRFSPDGSRLLYTSYATGFPQAMVMDVNTLATRSLG 247
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+G S + +SPDG WI ++ +++ G+ ++Y + R L + S
Sbjct: 248 SAQQGTMSFS-PRFSPDGRWIVYSLEKN----GNTDIYQMDAATGAQRALTNAPSI--ET 300
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDG+ IVF SD G TP +++ + +G + KR++ GTP
Sbjct: 301 SPSYSPDGRQIVFESDRSG-------TP-------QLYIMGANGGEPKRISFGEGRYGTP 346
Query: 672 AWGPR 676
W PR
Sbjct: 347 VWSPR 351
>gi|195939092|ref|ZP_03084474.1| translocation protein TolB, partial [Escherichia coli O157:H7 str.
EC4024]
Length = 389
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG 354
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD-AEG 544
+ +N++ A +R+T G N VS DGK++V S+ G +++ D A G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 545 G 545
G
Sbjct: 367 G 367
>gi|187733089|ref|YP_001879397.1| translocation protein TolB [Shigella boydii CDC 3083-94]
gi|226705895|sp|B2TUC6.1|TOLB_SHIB3 RecName: Full=Protein TolB; Flags: Precursor
gi|187430081|gb|ACD09355.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
CDC 3083-94]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|12084602|pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
gi|114794794|pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794795|pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794796|pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794797|pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGG 355
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|350267418|ref|YP_004878725.1| dienelactone hydrolase family [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349600305|gb|AEP88093.1| dienelactone hydrolase family [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 657
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 46/217 (21%)
Query: 516 PSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
P SPDG+ + F S R G LYI+ AEGGE +LT+ P+ + WSPDGEW+
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIISAEGGEA---RKLTDIPYGVSKPIWSPDGEWVLV 125
Query: 575 A---------SDRDNPGSGSFEMYLIHP-----NGTGLRK---------LIQSGSAG--- 608
+DR+ SFE + +G GL + ++SG
Sbjct: 126 TVSLGEGERINDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGKVKQLT 185
Query: 609 --RANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
+A+H P FSPDGKS+VF+++ + S PH ++ + LD DLK++T +
Sbjct: 186 NHKADHGDPAFSPDGKSLVFSANL--TETDDASKPH------DVCMMSLDTGDLKQITSH 237
Query: 665 SFEDGTPAWGP--RFIRPVDVEEVKNEQCAFEDCHWL 699
G ++ P R++ + E K Q A + WL
Sbjct: 238 RGSFGPSSFSPDGRYLALLGHE--KEYQNATFEKAWL 272
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 46/193 (23%)
Query: 516 PSVSPDGKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWS--DTMCN--- 564
P +PDG + ++ + N++I + + G PW+ + C
Sbjct: 19 PQYAPDGTRAAYVQSQANQEKDSYTSNIWIYETKTGRSI--------PWTHGEKRCTDPR 70
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG +AF SDR+ + ++Y+I G RKL + P +SPDG+ ++
Sbjct: 71 WSPDGRTLAFISDREGDAA---QLYIISAEGGEARKLTDIPYG--VSKPIWSPDGEWVLV 125
Query: 625 TSDYGG---ISAEPISTPHQYQP-------------------YGEIFKIKLDGSDLKRLT 662
T G I+ + P ++P Y ++ + + +K+LT
Sbjct: 126 TVSLGEGERINDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGKVKQLT 185
Query: 663 QNSFEDGTPAWGP 675
+ + G PA+ P
Sbjct: 186 NHKADHGDPAFSP 198
>gi|331672262|ref|ZP_08373053.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA280]
gi|331070457|gb|EGI41821.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA280]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|261278785|pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|425235160|ref|ZP_18629126.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TT12B]
gi|408166515|gb|EKH94083.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TT12B]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GHSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G++ L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGHSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|350545994|ref|ZP_08915426.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group Acolicins [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526231|emb|CCD41002.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group Acolicins [Candidatus
Burkholderia kirkii UZHbot1]
Length = 427
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 145/376 (38%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRRPTSSYRHIE--LFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G + F++ + R ++ + L+D VK + + VS ++ H + +I
Sbjct: 91 AKGADAFVSGSVNRLSNGQYEVRFRLYDTVKQQNLGGLSLVSAESGLRISAHKIADYIYA 150
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 151 KLLGGRGVFATRLSYVIHAGGRYQLQISDSDGQDAKIALSSPEPIIS--------PAWSP 202
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 203 DGTKVAYVLFERKKPVVYIHDLPTGRRVVVSNQKGNNSAPAWSPDGRKLAVA------LS 256
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I +N D S +RRLT + P SPDG WI F S R G +Y M A
Sbjct: 257 RTGNTQIFEVNADG----SGLRRLTQGSSIDTEPFFSPDGNWIYFTSDRGGQPQIYKMPA 312
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTGLR 599
G R+T +T SPDG+ +A+ + G F++Y L TGL
Sbjct: 313 AGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYIART----GGGFKLYLQDLASGTATGLT 368
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 369 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 408
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 409 VLSVQGGVVREPSWGP 424
>gi|433046870|ref|ZP_20234285.1| protein tolB [Escherichia coli KTE120]
gi|431571343|gb|ELI44232.1| protein tolB [Escherichia coli KTE120]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG Q+ I K L L+ L+
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG---------QQH-----IAKQDLATGGLQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
GL L+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 ---GLQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGAV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|124266539|ref|YP_001020543.1| translocation protein TolB [Methylibium petroleiphilum PM1]
gi|124259314|gb|ABM94308.1| TolB protein precursor, periplasmic component of the Tol biopolymer
transport system [Methylibium petroleiphilum PM1]
Length = 421
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG + + S W P + Y S F S +
Sbjct: 159 RIAYVTKGGGRFTLWVTDADGEGGQSALASPEPIISPAWSPDGRELAYVS----FESRKA 214
Query: 486 EVDIISINVDDVDGVSAVRR-LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V + + S RR L + +N+ P+ SPDG+ + +R G L++M G
Sbjct: 215 VVYVQEV-------ASGKRRTLASFRGSNSAPAWSPDGRQLALTLSRDGGSQLFVM---G 264
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
+G G+ RLT DT W+PDG+ I F SDR GS ++Y + G ++ S
Sbjct: 265 RDGEGVKRLTSSGAIDTEATWAPDGKSIYFVSDR----GGSPQIYRVPAGGGNAERVSFS 320
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
GS P SPDG+++ + S GG
Sbjct: 321 GSYN--ISPAISPDGRTMAYISRDGG 344
>gi|432636019|ref|ZP_19871902.1| protein tolB [Escherichia coli KTE81]
gi|431173390|gb|ELE73469.1| protein tolB [Escherichia coli KTE81]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|442599531|ref|ZP_21017249.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
gi|441651801|emb|CCQ02746.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
Length = 431
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGG 355
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|293397222|ref|ZP_06641495.1| tol-Pal system beta propeller repeat protein TolB [Serratia
odorifera DSM 4582]
gi|291420242|gb|EFE93498.1| tol-Pal system beta propeller repeat protein TolB [Serratia
odorifera DSM 4582]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPYELRVADYDGYNQFVVHRSPQPLMSPTWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ A+R++ + ++N P+ SPDG + F +++G NLY+M+
Sbjct: 222 GRSALVVQTLSN------GAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + +LT+G ++T W PDG+ +AF SD+ G ++Y I +G ++L
Sbjct: 276 GSGQ---ITQLTDGRSNNTEPTWFPDGQSLAFTSDQ----GGRPQIYKISASGGAAQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G G+ S DGK +V + G+ I K L ++ LT
Sbjct: 329 WEG--GQNQDSEVSADGKFLVMVTTNNGVQ--------------HIAKQDLGSGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSIAP 384
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPTWSPDGSKLAY------VTFESGRSALVVQTLSNGAIRQIASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
R+AF +YV+N Q+ + +T W P +++ +TS +
Sbjct: 257 RLAFALSKSGSLNLYVMNLGSGQITQLTDGRSNNTEPTWFPDGQSLAFTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I+ A +RLT G N VS DGK++V +T G +++ D
Sbjct: 311 RPQIYKISASG----GAAQRLTWEGGQNQDSEVSADGKFLVMVTTNNGVQHIAKQDL--- 363
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G G ++ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 364 -GSGAVQVLTDTFLDETPSIAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|387505793|ref|YP_006158049.1| translocation protein TolB [Escherichia coli O55:H7 str. RM12579]
gi|419124988|ref|ZP_13669887.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5C]
gi|419130490|ref|ZP_13675339.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5D]
gi|209776394|gb|ACI86509.1| periplasmic protein TolB [Escherichia coli]
gi|374357787|gb|AEZ39494.1| translocation protein TolB [Escherichia coli O55:H7 str. RM12579]
gi|377979950|gb|EHV43221.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5C]
gi|377980036|gb|EHV43305.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5D]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|424912428|ref|ZP_18335805.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392848459|gb|EJB00982.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. viciae USDA 2370]
Length = 435
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 208 PRFSPSRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 264
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 265 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSYSPDGQRVAFESDRGGRQQI 317
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 318 YVMNADGS---GQQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 370
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 371 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 414
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 415 NEQLIKTPTFAS-DPAWSP 432
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP + + + S
Sbjct: 169 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPSRQEVTYMS 221
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 222 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 274
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P +SPDG+ + F SD GG +I+
Sbjct: 275 TMDLRSRTTTRLTNTSAIDTA--PSYSPDGQRVAFESDRGGRQ--------------QIY 318
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 319 VMNADGSGQQRI---SFGDGSYSTPVWSPR 345
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 246 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSY 298
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSF--PSFSPKGDRIA 434
SPD RV + RG G Q+ + N S IS DGS+ P +SP+GD IA
Sbjct: 299 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRISF--GDGSYSTPVWSPRGDLIA 350
Query: 435 FVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
F + G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 351 FTKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 408
>gi|422970589|ref|ZP_16974101.1| protein tolB [Escherichia coli TA124]
gi|371600369|gb|EHN89144.1| protein tolB [Escherichia coli TA124]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|375259738|ref|YP_005018908.1| translocation protein TolB [Klebsiella oxytoca KCTC 1686]
gi|397656803|ref|YP_006497505.1| tolB protein [Klebsiella oxytoca E718]
gi|402839667|ref|ZP_10888151.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
OBRC7]
gi|421724842|ref|ZP_16164048.1| translocation protein TolB [Klebsiella oxytoca M5al]
gi|365909216|gb|AEX04669.1| translocation protein TolB [Klebsiella oxytoca KCTC 1686]
gi|394343284|gb|AFN29405.1| tolB protein precursor [Klebsiella oxytoca E718]
gi|402287593|gb|EJU36032.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
OBRC7]
gi|410374336|gb|EKP29011.1| translocation protein TolB [Klebsiella oxytoca M5al]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFLVHRSTQPLMSPAWSPDGAKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGSVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGAKLAY------VTFESGRSALVVQTLANGSVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|53720374|ref|YP_109360.1| translocation protein TolB [Burkholderia pseudomallei K96243]
gi|167720990|ref|ZP_02404226.1| translocation protein TolB [Burkholderia pseudomallei DM98]
gi|167739947|ref|ZP_02412721.1| translocation protein TolB [Burkholderia pseudomallei 14]
gi|167817184|ref|ZP_02448864.1| translocation protein TolB [Burkholderia pseudomallei 91]
gi|167825597|ref|ZP_02457068.1| translocation protein TolB [Burkholderia pseudomallei 9]
gi|167847081|ref|ZP_02472589.1| translocation protein TolB [Burkholderia pseudomallei B7210]
gi|167895665|ref|ZP_02483067.1| translocation protein TolB [Burkholderia pseudomallei 7894]
gi|167904058|ref|ZP_02491263.1| translocation protein TolB [Burkholderia pseudomallei NCTC 13177]
gi|167912315|ref|ZP_02499406.1| translocation protein TolB [Burkholderia pseudomallei 112]
gi|167920272|ref|ZP_02507363.1| translocation protein TolB [Burkholderia pseudomallei BCC215]
gi|254194869|ref|ZP_04901299.1| putative TolB protein [Burkholderia pseudomallei S13]
gi|67461935|sp|Q63RA8.1|TOLB_BURPS RecName: Full=Protein TolB; Flags: Precursor
gi|118574573|sp|Q3JP75.2|TOLB_BURP1 RecName: Full=Protein TolB; Flags: Precursor
gi|52210788|emb|CAH36772.1| putative periplasmic TolB protein [Burkholderia pseudomallei
K96243]
gi|169651618|gb|EDS84311.1| putative TolB protein [Burkholderia pseudomallei S13]
Length = 433
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 96 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 156 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 364 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 400
>gi|291281683|ref|YP_003498501.1| protein tolB precursor [Escherichia coli O55:H7 str. CB9615]
gi|290761556|gb|ADD55517.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615]
Length = 431
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGG 355
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|15800456|ref|NP_286468.1| translocation protein TolB [Escherichia coli O157:H7 str. EDL933]
gi|15830029|ref|NP_308802.1| translocation protein TolB [Escherichia coli O157:H7 str. Sakai]
gi|16128715|ref|NP_415268.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655]
gi|30062097|ref|NP_836268.1| translocation protein TolB [Shigella flexneri 2a str. 2457T]
gi|74311264|ref|YP_309683.1| translocation protein TolB [Shigella sonnei Ss046]
gi|110640948|ref|YP_668676.1| translocation protein TolB [Escherichia coli 536]
gi|157154962|ref|YP_001461901.1| translocation protein TolB [Escherichia coli E24377A]
gi|168779235|ref|ZP_02804242.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4076]
gi|168786906|ref|ZP_02811913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC869]
gi|170020915|ref|YP_001725869.1| translocation protein TolB [Escherichia coli ATCC 8739]
gi|170080407|ref|YP_001729727.1| translocation protein TolB [Escherichia coli str. K-12 substr.
DH10B]
gi|188496422|ref|ZP_03003692.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
53638]
gi|189402960|ref|ZP_03006911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4486]
gi|208808867|ref|ZP_03251204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4206]
gi|208815738|ref|ZP_03256917.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4045]
gi|209399861|ref|YP_002269374.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4115]
gi|215485762|ref|YP_002328193.1| translocation protein TolB [Escherichia coli O127:H6 str. E2348/69]
gi|217324392|ref|ZP_03440476.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. TW14588]
gi|218557653|ref|YP_002390566.1| translocation protein TolB [Escherichia coli S88]
gi|218688531|ref|YP_002396743.1| translocation protein TolB [Escherichia coli ED1a]
gi|218694164|ref|YP_002401831.1| translocation protein TolB [Escherichia coli 55989]
gi|218699112|ref|YP_002406741.1| translocation protein TolB [Escherichia coli IAI39]
gi|218704067|ref|YP_002411586.1| translocation protein TolB [Escherichia coli UMN026]
gi|222155471|ref|YP_002555610.1| Protein tolB [Escherichia coli LF82]
gi|238900005|ref|YP_002925801.1| translocation protein TolB [Escherichia coli BW2952]
gi|251784229|ref|YP_002998533.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4
Transport System and The Colicin A Import System
[Escherichia coli BL21(DE3)]
gi|253774289|ref|YP_003037120.1| translocation protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254160810|ref|YP_003043918.1| translocation protein TolB [Escherichia coli B str. REL606]
gi|254287598|ref|YP_003053346.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)]
gi|254791897|ref|YP_003076734.1| translocation protein TolB [Escherichia coli O157:H7 str. TW14359]
gi|260842946|ref|YP_003220724.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009]
gi|260853975|ref|YP_003227866.1| translocation protein TolB [Escherichia coli O26:H11 str. 11368]
gi|260866871|ref|YP_003233273.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128]
gi|293403995|ref|ZP_06647989.1| tolB [Escherichia coli FVEC1412]
gi|293409124|ref|ZP_06652700.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B354]
gi|293414025|ref|ZP_06656674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B185]
gi|293433008|ref|ZP_06661436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B088]
gi|297520453|ref|ZP_06938839.1| translocation protein TolB [Escherichia coli OP50]
gi|298379775|ref|ZP_06989380.1| tolB [Escherichia coli FVEC1302]
gi|306812853|ref|ZP_07447046.1| translocation protein TolB [Escherichia coli NC101]
gi|307314795|ref|ZP_07594389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W]
gi|312965176|ref|ZP_07779413.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2362-75]
gi|312970819|ref|ZP_07784998.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1827-70]
gi|331641241|ref|ZP_08342376.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H736]
gi|331645891|ref|ZP_08346994.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M605]
gi|331651748|ref|ZP_08352767.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M718]
gi|331662100|ref|ZP_08363023.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA143]
gi|331667107|ref|ZP_08367972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA271]
gi|331676422|ref|ZP_08377119.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H591]
gi|331682170|ref|ZP_08382792.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H299]
gi|378713896|ref|YP_005278789.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli KO11FL]
gi|383177313|ref|YP_005455318.1| translocation protein TolB [Shigella sonnei 53G]
gi|384542159|ref|YP_005726221.1| Protein tolB precursor [Shigella flexneri 2002017]
gi|386279754|ref|ZP_10057431.1| protein tolB [Escherichia sp. 4_1_40B]
gi|386596417|ref|YP_006092817.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli DH1]
gi|386598463|ref|YP_006099969.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli IHE3034]
gi|386605362|ref|YP_006111662.1| translocation protein TolB [Escherichia coli UM146]
gi|386608066|ref|YP_006123552.1| hypothetical protein ECW_m0795 [Escherichia coli W]
gi|386612908|ref|YP_006132574.1| translocation protein TolB [Escherichia coli UMNK88]
gi|386618193|ref|YP_006137773.1| Translocation protein [Escherichia coli NA114]
gi|386623132|ref|YP_006142860.1| hypothetical protein CE10_0744 [Escherichia coli O7:K1 str. CE10]
gi|386638099|ref|YP_006104897.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ABU 83972]
gi|386702490|ref|YP_006166327.1| translocation protein TolB [Escherichia coli KO11FL]
gi|386703908|ref|YP_006167755.1| Protein tolB precursor [Escherichia coli P12b]
gi|386708508|ref|YP_006172229.1| translocation protein TolB [Escherichia coli W]
gi|387606227|ref|YP_006095083.1| colicin import protein [Escherichia coli 042]
gi|387611226|ref|YP_006114342.1| colicin import protein [Escherichia coli ETEC H10407]
gi|387616003|ref|YP_006119025.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C]
gi|387620474|ref|YP_006128101.1| tolB [Escherichia coli DH1]
gi|387828726|ref|YP_003348663.1| TolB protein [Escherichia coli SE15]
gi|387881310|ref|YP_006311612.1| translocation protein TolB [Escherichia coli Xuzhou21]
gi|388476832|ref|YP_489020.1| hypothetical protein Y75_p0720 [Escherichia coli str. K-12 substr.
W3110]
gi|404374069|ref|ZP_10979290.1| protein tolB [Escherichia sp. 1_1_43]
gi|407468156|ref|YP_006785402.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483112|ref|YP_006780261.1| translocation protein TolB [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483665|ref|YP_006771211.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779833|ref|ZP_11490404.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3431]
gi|415789790|ref|ZP_11494701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa14]
gi|415804958|ref|ZP_11501189.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E128010]
gi|415818862|ref|ZP_11508478.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1180]
gi|415827856|ref|ZP_11514625.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1357]
gi|415836603|ref|ZP_11518954.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
RN587/1]
gi|415852703|ref|ZP_11529040.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
53G]
gi|415855567|ref|ZP_11530856.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2a str. 2457T]
gi|416285548|ref|ZP_11647770.1| translocation protein TolB [Shigella boydii ATCC 9905]
gi|416312757|ref|ZP_11657778.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044]
gi|416317100|ref|ZP_11660232.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212]
gi|416325330|ref|ZP_11665738.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125]
gi|416346179|ref|ZP_11679450.1| translocation protein TolB [Escherichia coli EC4100B]
gi|416781501|ref|ZP_11877280.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101]
gi|416792710|ref|ZP_11882176.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89]
gi|416804043|ref|ZP_11887047.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687]
gi|416815033|ref|ZP_11891743.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97]
gi|416825048|ref|ZP_11896337.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905]
gi|416835879|ref|ZP_11901609.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61]
gi|416896247|ref|ZP_11926111.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_7v]
gi|417083237|ref|ZP_11951332.1| An Essential Component Of The Tol- Dependent Translocation System
[Escherichia coli cloneA_i1]
gi|417118690|ref|ZP_11969208.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2741]
gi|417152508|ref|ZP_11991299.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0497]
gi|417161581|ref|ZP_11997817.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0741]
gi|417176889|ref|ZP_12006685.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2608]
gi|417179647|ref|ZP_12007637.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0624]
gi|417193468|ref|ZP_12015315.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0522]
gi|417225197|ref|ZP_12028488.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.154]
gi|417230374|ref|ZP_12031960.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0959]
gi|417253261|ref|ZP_12045020.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0967]
gi|417274339|ref|ZP_12061679.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.4168]
gi|417284556|ref|ZP_12071851.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3003]
gi|417288902|ref|ZP_12076187.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07793]
gi|417289940|ref|ZP_12077223.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B41]
gi|417294405|ref|ZP_12081679.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
900105 (10e)]
gi|417580007|ref|ZP_12230825.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_B2F1]
gi|417585542|ref|ZP_12236319.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_C165-02]
gi|417590429|ref|ZP_12241146.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2534-86]
gi|417601078|ref|ZP_12251660.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_94C]
gi|417606850|ref|ZP_12257374.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_DG131-3]
gi|417611779|ref|ZP_12262251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_EH250]
gi|417617180|ref|ZP_12267610.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
G58-1]
gi|417622061|ref|ZP_12272387.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_H.1.8]
gi|417627671|ref|ZP_12277918.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_MHI813]
gi|417633345|ref|ZP_12283564.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_S1191]
gi|417638066|ref|ZP_12288234.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TX1999]
gi|417661273|ref|ZP_12310854.1| TolB protein precursor [Escherichia coli AA86]
gi|417665883|ref|ZP_12315445.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_O31]
gi|417688510|ref|ZP_12337753.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
5216-82]
gi|417700640|ref|ZP_12349780.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-218]
gi|417706180|ref|ZP_12355243.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri VA-6]
gi|417711272|ref|ZP_12360278.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-272]
gi|417715721|ref|ZP_12364655.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-227]
gi|417721604|ref|ZP_12370449.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-304]
gi|417726981|ref|ZP_12375725.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-671]
gi|417732268|ref|ZP_12380938.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2747-71]
gi|417737421|ref|ZP_12386027.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 4343-70]
gi|417742081|ref|ZP_12390632.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2930-71]
gi|417754498|ref|ZP_12402593.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2B]
gi|417804056|ref|ZP_12451089.1| translocation protein TolB [Escherichia coli O104:H4 str. LB226692]
gi|417831813|ref|ZP_12478334.1| translocation protein TolB [Escherichia coli O104:H4 str. 01-09591]
gi|417945033|ref|ZP_12588270.1| translocation protein TolB [Escherichia coli XH140A]
gi|417978267|ref|ZP_12619037.1| translocation protein TolB [Escherichia coli XH001]
gi|418253945|ref|ZP_12878864.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 6603-63]
gi|418262864|ref|ZP_12884148.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
str. Moseley]
gi|418301594|ref|ZP_12913388.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
UMNF18]
gi|418944241|ref|ZP_13497331.1| translocation protein TolB [Escherichia coli O157:H43 str. T22]
gi|419000889|ref|ZP_13548447.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1B]
gi|419006413|ref|ZP_13553867.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1C]
gi|419012264|ref|ZP_13559629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1D]
gi|419017173|ref|ZP_13564499.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1E]
gi|419022861|ref|ZP_13570103.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2A]
gi|419027674|ref|ZP_13574871.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2C]
gi|419033362|ref|ZP_13580460.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2D]
gi|419038451|ref|ZP_13585510.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2E]
gi|419043903|ref|ZP_13590876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3A]
gi|419049350|ref|ZP_13596267.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3B]
gi|419055412|ref|ZP_13602267.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3C]
gi|419061009|ref|ZP_13607790.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3D]
gi|419066977|ref|ZP_13613563.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3E]
gi|419073850|ref|ZP_13619421.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3F]
gi|419079097|ref|ZP_13624579.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4A]
gi|419084723|ref|ZP_13630136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4B]
gi|419090815|ref|ZP_13636133.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4C]
gi|419096344|ref|ZP_13641588.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4D]
gi|419102484|ref|ZP_13647650.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4E]
gi|419107834|ref|ZP_13652944.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4F]
gi|419118108|ref|ZP_13663107.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5A]
gi|419119240|ref|ZP_13664219.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5B]
gi|419135218|ref|ZP_13680025.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5E]
gi|419141262|ref|ZP_13686016.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6A]
gi|419147965|ref|ZP_13692647.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6B]
gi|419152621|ref|ZP_13697205.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6C]
gi|419158068|ref|ZP_13702586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6D]
gi|419162981|ref|ZP_13707458.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6E]
gi|419168732|ref|ZP_13713126.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7A]
gi|419174159|ref|ZP_13718012.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7B]
gi|419179713|ref|ZP_13723336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7C]
gi|419185272|ref|ZP_13728794.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7D]
gi|419190724|ref|ZP_13734190.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7E]
gi|419195850|ref|ZP_13739255.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8A]
gi|419201825|ref|ZP_13745050.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8B]
gi|419207837|ref|ZP_13750962.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8C]
gi|419214348|ref|ZP_13757376.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8D]
gi|419220007|ref|ZP_13762960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8E]
gi|419225457|ref|ZP_13768344.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9A]
gi|419231283|ref|ZP_13774073.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9B]
gi|419236626|ref|ZP_13779375.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9C]
gi|419242201|ref|ZP_13784849.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9D]
gi|419247651|ref|ZP_13790262.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9E]
gi|419253411|ref|ZP_13795956.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10A]
gi|419259463|ref|ZP_13801915.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10B]
gi|419265484|ref|ZP_13807869.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10C]
gi|419271138|ref|ZP_13813466.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10D]
gi|419276958|ref|ZP_13819219.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10E]
gi|419282658|ref|ZP_13824874.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10F]
gi|419288201|ref|ZP_13830316.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11A]
gi|419293539|ref|ZP_13835598.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11B]
gi|419299023|ref|ZP_13841037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11C]
gi|419305285|ref|ZP_13847196.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11D]
gi|419310342|ref|ZP_13852214.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11E]
gi|419315620|ref|ZP_13857445.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12A]
gi|419321467|ref|ZP_13863203.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12B]
gi|419327684|ref|ZP_13869313.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12C]
gi|419333119|ref|ZP_13874678.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12D]
gi|419338519|ref|ZP_13880005.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12E]
gi|419344368|ref|ZP_13885750.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13A]
gi|419348806|ref|ZP_13890159.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13B]
gi|419353721|ref|ZP_13895004.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13C]
gi|419359050|ref|ZP_13900280.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13D]
gi|419364018|ref|ZP_13905199.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13E]
gi|419369007|ref|ZP_13910135.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14A]
gi|419374408|ref|ZP_13915459.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14B]
gi|419379684|ref|ZP_13920660.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14C]
gi|419384893|ref|ZP_13925792.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14D]
gi|419390139|ref|ZP_13930976.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15A]
gi|419395311|ref|ZP_13936094.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15B]
gi|419400664|ref|ZP_13941395.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15C]
gi|419405838|ref|ZP_13946540.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15D]
gi|419411330|ref|ZP_13952001.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15E]
gi|419699604|ref|ZP_14227218.1| translocation protein TolB [Escherichia coli SCI-07]
gi|419813088|ref|ZP_14337945.1| translocation protein TolB [Escherichia coli O32:H37 str. P4]
gi|419866092|ref|ZP_14388463.1| translocation protein TolB [Escherichia coli O103:H25 str. CVM9340]
gi|419871178|ref|ZP_14393238.1| translocation protein TolB [Escherichia coli O103:H2 str. CVM9450]
gi|419878756|ref|ZP_14400216.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9534]
gi|419886172|ref|ZP_14406821.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9545]
gi|419889533|ref|ZP_14409918.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9570]
gi|419896166|ref|ZP_14415906.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9574]
gi|419905099|ref|ZP_14424073.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9942]
gi|419906853|ref|ZP_14425721.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli O26:H11 str. CVM10026]
gi|419917810|ref|ZP_14436034.1| translocation protein TolB [Escherichia coli KD2]
gi|419924495|ref|ZP_14442384.1| translocation protein TolB [Escherichia coli 541-15]
gi|419928834|ref|ZP_14446539.1| translocation protein TolB [Escherichia coli 541-1]
gi|419936393|ref|ZP_14453407.1| translocation protein TolB [Escherichia coli 576-1]
gi|419941098|ref|ZP_14457803.1| translocation protein TolB [Escherichia coli 75]
gi|419945297|ref|ZP_14461745.1| translocation protein TolB [Escherichia coli HM605]
gi|419952288|ref|ZP_14468459.1| translocation protein TolB [Escherichia coli CUMT8]
gi|420096370|ref|ZP_14607761.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9634]
gi|420101974|ref|ZP_14613021.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9455]
gi|420109359|ref|ZP_14619503.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9553]
gi|420116818|ref|ZP_14626194.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10021]
gi|420121986|ref|ZP_14631018.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10030]
gi|420126844|ref|ZP_14635546.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10224]
gi|420134507|ref|ZP_14642613.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9952]
gi|420270203|ref|ZP_14772562.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA22]
gi|420273800|ref|ZP_14776133.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA40]
gi|420279040|ref|ZP_14781306.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW06591]
gi|420285185|ref|ZP_14787402.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10246]
gi|420290884|ref|ZP_14793048.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW11039]
gi|420297896|ref|ZP_14799963.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09109]
gi|420302662|ref|ZP_14804691.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10119]
gi|420308164|ref|ZP_14810136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1738]
gi|420313673|ref|ZP_14815579.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1734]
gi|420329844|ref|ZP_14831548.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-1770]
gi|420340216|ref|ZP_14841741.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-404]
gi|420357254|ref|ZP_14858269.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3226-85]
gi|420362185|ref|ZP_14863108.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
4822-66]
gi|420384368|ref|ZP_14883754.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa12]
gi|420390150|ref|ZP_14889418.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPEC C342-62]
gi|421810982|ref|ZP_16246784.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0416]
gi|421817059|ref|ZP_16252617.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0821]
gi|421822452|ref|ZP_16257889.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK920]
gi|421829186|ref|ZP_16264514.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA7]
gi|422331010|ref|ZP_16412027.1| protein tolB [Escherichia coli 4_1_47FAA]
gi|422748248|ref|ZP_16802161.1| tol-Pal system beta propeller TolB [Escherichia coli H252]
gi|422753352|ref|ZP_16807179.1| tol-Pal system beta propeller TolB [Escherichia coli H263]
gi|422763880|ref|ZP_16817633.1| tol-Pal system beta propeller TolB [Escherichia coli E1167]
gi|422769937|ref|ZP_16823628.1| tol-Pal system beta propeller TolB [Escherichia coli E482]
gi|422782475|ref|ZP_16835260.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509]
gi|422800098|ref|ZP_16848596.1| tol-Pal system beta propeller TolB [Escherichia coli M863]
gi|422816715|ref|ZP_16864930.1| protein tolB [Escherichia coli M919]
gi|422827949|ref|ZP_16876122.1| tolB [Escherichia coli B093]
gi|422839210|ref|ZP_16887182.1| tolB [Escherichia coli H397]
gi|422959127|ref|ZP_16971058.1| protein tolB [Escherichia coli H494]
gi|422991419|ref|ZP_16982190.1| protein tolB [Escherichia coli O104:H4 str. C227-11]
gi|422993361|ref|ZP_16984125.1| protein tolB [Escherichia coli O104:H4 str. C236-11]
gi|422998573|ref|ZP_16989329.1| protein tolB [Escherichia coli O104:H4 str. 09-7901]
gi|423007034|ref|ZP_16997777.1| protein tolB [Escherichia coli O104:H4 str. 04-8351]
gi|423008679|ref|ZP_16999417.1| protein tolB [Escherichia coli O104:H4 str. 11-3677]
gi|423022867|ref|ZP_17013570.1| protein tolB [Escherichia coli O104:H4 str. 11-4404]
gi|423028019|ref|ZP_17018712.1| protein tolB [Escherichia coli O104:H4 str. 11-4522]
gi|423033852|ref|ZP_17024536.1| protein tolB [Escherichia coli O104:H4 str. 11-4623]
gi|423036719|ref|ZP_17027393.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041838|ref|ZP_17032505.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048527|ref|ZP_17039184.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423052110|ref|ZP_17040918.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423059076|ref|ZP_17047872.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423659402|ref|ZP_17634639.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA31]
gi|423701487|ref|ZP_17675946.1| protein tolB [Escherichia coli H730]
gi|423708666|ref|ZP_17683044.1| protein tolB [Escherichia coli B799]
gi|424075619|ref|ZP_17812971.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA505]
gi|424081949|ref|ZP_17818814.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA517]
gi|424088574|ref|ZP_17824837.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1996]
gi|424094794|ref|ZP_17830551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1985]
gi|424101200|ref|ZP_17836364.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1990]
gi|424108004|ref|ZP_17842588.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93-001]
gi|424113992|ref|ZP_17848150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA3]
gi|424120052|ref|ZP_17853770.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA5]
gi|424126303|ref|ZP_17859512.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA9]
gi|424132404|ref|ZP_17865211.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA10]
gi|424138946|ref|ZP_17871247.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA14]
gi|424145385|ref|ZP_17877163.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA15]
gi|424151524|ref|ZP_17882784.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA24]
gi|424185307|ref|ZP_17888223.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA25]
gi|424269051|ref|ZP_17894127.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA28]
gi|424424043|ref|ZP_17899856.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA32]
gi|424453932|ref|ZP_17905475.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA33]
gi|424460247|ref|ZP_17911179.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA39]
gi|424466714|ref|ZP_17916909.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA41]
gi|424473270|ref|ZP_17922953.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA42]
gi|424479216|ref|ZP_17928468.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07945]
gi|424485283|ref|ZP_17934153.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09098]
gi|424491447|ref|ZP_17939814.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09195]
gi|424498494|ref|ZP_17945776.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4203]
gi|424504722|ref|ZP_17951507.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4196]
gi|424510992|ref|ZP_17957222.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14313]
gi|424518554|ref|ZP_17962984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14301]
gi|424524381|ref|ZP_17968411.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4421]
gi|424530580|ref|ZP_17974216.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4422]
gi|424536554|ref|ZP_17979826.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4013]
gi|424542472|ref|ZP_17985293.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4402]
gi|424548791|ref|ZP_17991003.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4439]
gi|424555053|ref|ZP_17996778.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4436]
gi|424561399|ref|ZP_18002694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4437]
gi|424567431|ref|ZP_18008353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4448]
gi|424573616|ref|ZP_18014047.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1845]
gi|424579565|ref|ZP_18019506.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1863]
gi|424748533|ref|ZP_18176676.1| translocation protein TolB [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424761791|ref|ZP_18189328.1| translocation protein TolB [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424771475|ref|ZP_18198618.1| translocation protein TolB [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425096244|ref|ZP_18499275.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4870]
gi|425102389|ref|ZP_18505041.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.2239]
gi|425108180|ref|ZP_18510438.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
6.0172]
gi|425120627|ref|ZP_18522323.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0569]
gi|425124011|ref|ZP_18525596.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0586]
gi|425130051|ref|ZP_18531157.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.2524]
gi|425136389|ref|ZP_18537120.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0833]
gi|425142288|ref|ZP_18542582.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0869]
gi|425148600|ref|ZP_18548502.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.0221]
gi|425154218|ref|ZP_18553773.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA34]
gi|425160670|ref|ZP_18559850.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA506]
gi|425166186|ref|ZP_18565002.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA507]
gi|425172472|ref|ZP_18570876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA504]
gi|425178360|ref|ZP_18576420.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1999]
gi|425184502|ref|ZP_18582134.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1997]
gi|425191260|ref|ZP_18588394.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE1487]
gi|425197586|ref|ZP_18594240.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE037]
gi|425204245|ref|ZP_18600379.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK2001]
gi|425216044|ref|ZP_18611369.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA23]
gi|425222619|ref|ZP_18617483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA49]
gi|425228858|ref|ZP_18623260.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA45]
gi|425241160|ref|ZP_18634800.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MA6]
gi|425247281|ref|ZP_18640494.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5905]
gi|425253011|ref|ZP_18645892.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
CB7326]
gi|425259327|ref|ZP_18651695.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC96038]
gi|425265427|ref|ZP_18657353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5412]
gi|425276572|ref|ZP_18667911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ARS4.2123]
gi|425287324|ref|ZP_18678248.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3006]
gi|425292885|ref|ZP_18683466.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA38]
gi|425298920|ref|ZP_18688969.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
07798]
gi|425304228|ref|ZP_18694012.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
N1]
gi|425309612|ref|ZP_18699081.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1735]
gi|425315535|ref|ZP_18704613.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1736]
gi|425321599|ref|ZP_18710272.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1737]
gi|425327790|ref|ZP_18716013.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1846]
gi|425333974|ref|ZP_18721696.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1847]
gi|425340385|ref|ZP_18727631.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1848]
gi|425346260|ref|ZP_18733064.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1849]
gi|425352485|ref|ZP_18738869.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1850]
gi|425358478|ref|ZP_18744454.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1856]
gi|425364586|ref|ZP_18750134.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1862]
gi|425371033|ref|ZP_18755999.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1864]
gi|425377613|ref|ZP_18761992.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1865]
gi|425383818|ref|ZP_18767701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1866]
gi|425390516|ref|ZP_18773978.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1868]
gi|425396637|ref|ZP_18779686.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1869]
gi|425402627|ref|ZP_18785234.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1870]
gi|425409168|ref|ZP_18791324.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE098]
gi|425415449|ref|ZP_18797089.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK523]
gi|425421389|ref|ZP_18802597.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1288]
gi|425426587|ref|ZP_18807639.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1304]
gi|427803805|ref|ZP_18970872.1| periplasmic protein [Escherichia coli chi7122]
gi|427808395|ref|ZP_18975460.1| periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli]
gi|428945268|ref|ZP_19017905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1467]
gi|428957272|ref|ZP_19028958.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
89.0511]
gi|428963584|ref|ZP_19034770.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0091]
gi|428969750|ref|ZP_19040380.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0039]
gi|428976175|ref|ZP_19046344.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.2281]
gi|428981946|ref|ZP_19051677.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0055]
gi|428988199|ref|ZP_19057488.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0056]
gi|428994013|ref|ZP_19062919.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
94.0618]
gi|429000126|ref|ZP_19068629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0183]
gi|429008754|ref|ZP_19076299.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.1288]
gi|429012691|ref|ZP_19079943.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0943]
gi|429018871|ref|ZP_19085650.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0428]
gi|429024588|ref|ZP_19090994.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0427]
gi|429030907|ref|ZP_19096781.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0939]
gi|429043022|ref|ZP_19108022.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0107]
gi|429048793|ref|ZP_19113449.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0003]
gi|429054169|ref|ZP_19118655.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.1742]
gi|429059845|ref|ZP_19123984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0007]
gi|429065316|ref|ZP_19129172.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0672]
gi|429071876|ref|ZP_19135227.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0678]
gi|429077192|ref|ZP_19140405.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0713]
gi|429722909|ref|ZP_19257800.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429775081|ref|ZP_19307081.1| protein tolB [Escherichia coli O104:H4 str. 11-02030]
gi|429780267|ref|ZP_19312219.1| protein tolB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429784318|ref|ZP_19316230.1| protein tolB [Escherichia coli O104:H4 str. 11-02092]
gi|429789655|ref|ZP_19321530.1| protein tolB [Escherichia coli O104:H4 str. 11-02093]
gi|429795885|ref|ZP_19327711.1| protein tolB [Escherichia coli O104:H4 str. 11-02281]
gi|429801813|ref|ZP_19333590.1| protein tolB [Escherichia coli O104:H4 str. 11-02318]
gi|429805445|ref|ZP_19337191.1| protein tolB [Escherichia coli O104:H4 str. 11-02913]
gi|429810254|ref|ZP_19341956.1| protein tolB [Escherichia coli O104:H4 str. 11-03439]
gi|429816014|ref|ZP_19347673.1| protein tolB [Escherichia coli O104:H4 str. 11-04080]
gi|429821602|ref|ZP_19353215.1| protein tolB [Escherichia coli O104:H4 str. 11-03943]
gi|429824388|ref|ZP_19355879.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0109]
gi|429830746|ref|ZP_19361590.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0010]
gi|429907273|ref|ZP_19373241.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911468|ref|ZP_19377424.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9941]
gi|429917309|ref|ZP_19383249.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429922347|ref|ZP_19388268.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429923200|ref|ZP_19389116.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429932095|ref|ZP_19397989.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933696|ref|ZP_19399586.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429939355|ref|ZP_19405229.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946997|ref|ZP_19412852.1| protein tolB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949627|ref|ZP_19415475.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957907|ref|ZP_19423736.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0466]
gi|432352647|ref|ZP_19595932.1| protein tolB [Escherichia coli KTE2]
gi|432357031|ref|ZP_19600278.1| protein tolB [Escherichia coli KTE4]
gi|432361503|ref|ZP_19604688.1| protein tolB [Escherichia coli KTE5]
gi|432368688|ref|ZP_19611790.1| protein tolB [Escherichia coli KTE10]
gi|432375852|ref|ZP_19618861.1| protein tolB [Escherichia coli KTE12]
gi|432380370|ref|ZP_19623326.1| protein tolB [Escherichia coli KTE15]
gi|432386140|ref|ZP_19629037.1| protein tolB [Escherichia coli KTE16]
gi|432390730|ref|ZP_19633589.1| protein tolB [Escherichia coli KTE21]
gi|432396627|ref|ZP_19639413.1| protein tolB [Escherichia coli KTE25]
gi|432400884|ref|ZP_19643639.1| protein tolB [Escherichia coli KTE26]
gi|432405561|ref|ZP_19648283.1| protein tolB [Escherichia coli KTE28]
gi|432410748|ref|ZP_19653429.1| protein tolB [Escherichia coli KTE39]
gi|432415667|ref|ZP_19658293.1| protein tolB [Escherichia coli KTE44]
gi|432420822|ref|ZP_19663378.1| protein tolB [Escherichia coli KTE178]
gi|432424937|ref|ZP_19667454.1| protein tolB [Escherichia coli KTE181]
gi|432430795|ref|ZP_19673239.1| protein tolB [Escherichia coli KTE187]
gi|432435323|ref|ZP_19677723.1| protein tolB [Escherichia coli KTE188]
gi|432440066|ref|ZP_19682420.1| protein tolB [Escherichia coli KTE189]
gi|432445179|ref|ZP_19687486.1| protein tolB [Escherichia coli KTE191]
gi|432453500|ref|ZP_19695738.1| protein tolB [Escherichia coli KTE193]
gi|432455609|ref|ZP_19697809.1| protein tolB [Escherichia coli KTE201]
gi|432459760|ref|ZP_19701918.1| protein tolB [Escherichia coli KTE204]
gi|432464707|ref|ZP_19706814.1| protein tolB [Escherichia coli KTE205]
gi|432470115|ref|ZP_19712168.1| protein tolB [Escherichia coli KTE206]
gi|432474797|ref|ZP_19716806.1| protein tolB [Escherichia coli KTE208]
gi|432480120|ref|ZP_19722083.1| protein tolB [Escherichia coli KTE210]
gi|432484439|ref|ZP_19726360.1| protein tolB [Escherichia coli KTE212]
gi|432488280|ref|ZP_19730167.1| protein tolB [Escherichia coli KTE213]
gi|432494548|ref|ZP_19736365.1| protein tolB [Escherichia coli KTE214]
gi|432498958|ref|ZP_19740735.1| protein tolB [Escherichia coli KTE216]
gi|432503387|ref|ZP_19745123.1| protein tolB [Escherichia coli KTE220]
gi|432512940|ref|ZP_19750176.1| protein tolB [Escherichia coli KTE224]
gi|432521434|ref|ZP_19758591.1| protein tolB [Escherichia coli KTE228]
gi|432522832|ref|ZP_19759970.1| protein tolB [Escherichia coli KTE230]
gi|432530072|ref|ZP_19767113.1| protein tolB [Escherichia coli KTE233]
gi|432532893|ref|ZP_19769888.1| protein tolB [Escherichia coli KTE234]
gi|432536746|ref|ZP_19773665.1| protein tolB [Escherichia coli KTE235]
gi|432542085|ref|ZP_19778943.1| protein tolB [Escherichia coli KTE236]
gi|432547429|ref|ZP_19784223.1| protein tolB [Escherichia coli KTE237]
gi|432552695|ref|ZP_19789426.1| protein tolB [Escherichia coli KTE47]
gi|432557728|ref|ZP_19794418.1| protein tolB [Escherichia coli KTE49]
gi|432562614|ref|ZP_19799238.1| protein tolB [Escherichia coli KTE51]
gi|432567518|ref|ZP_19804044.1| protein tolB [Escherichia coli KTE53]
gi|432572680|ref|ZP_19809171.1| protein tolB [Escherichia coli KTE55]
gi|432579395|ref|ZP_19815827.1| protein tolB [Escherichia coli KTE56]
gi|432582804|ref|ZP_19819214.1| protein tolB [Escherichia coli KTE57]
gi|432586985|ref|ZP_19823356.1| protein tolB [Escherichia coli KTE58]
gi|432591797|ref|ZP_19828125.1| protein tolB [Escherichia coli KTE60]
gi|432596628|ref|ZP_19832910.1| protein tolB [Escherichia coli KTE62]
gi|432601281|ref|ZP_19837531.1| protein tolB [Escherichia coli KTE66]
gi|432606564|ref|ZP_19842758.1| protein tolB [Escherichia coli KTE67]
gi|432610416|ref|ZP_19846588.1| protein tolB [Escherichia coli KTE72]
gi|432615574|ref|ZP_19851702.1| protein tolB [Escherichia coli KTE75]
gi|432620815|ref|ZP_19856858.1| protein tolB [Escherichia coli KTE76]
gi|432626286|ref|ZP_19862268.1| protein tolB [Escherichia coli KTE77]
gi|432630362|ref|ZP_19866307.1| protein tolB [Escherichia coli KTE80]
gi|432639905|ref|ZP_19875746.1| protein tolB [Escherichia coli KTE83]
gi|432650207|ref|ZP_19885968.1| protein tolB [Escherichia coli KTE87]
gi|432654972|ref|ZP_19890685.1| protein tolB [Escherichia coli KTE93]
gi|432659973|ref|ZP_19895624.1| protein tolB [Escherichia coli KTE111]
gi|432664973|ref|ZP_19900560.1| protein tolB [Escherichia coli KTE116]
gi|432669649|ref|ZP_19905191.1| protein tolB [Escherichia coli KTE119]
gi|432673704|ref|ZP_19909199.1| protein tolB [Escherichia coli KTE142]
gi|432679164|ref|ZP_19914564.1| protein tolB [Escherichia coli KTE143]
gi|432684550|ref|ZP_19919863.1| protein tolB [Escherichia coli KTE156]
gi|432690638|ref|ZP_19925878.1| protein tolB [Escherichia coli KTE161]
gi|432693498|ref|ZP_19928710.1| protein tolB [Escherichia coli KTE162]
gi|432698052|ref|ZP_19933219.1| protein tolB [Escherichia coli KTE169]
gi|432703279|ref|ZP_19938401.1| protein tolB [Escherichia coli KTE171]
gi|432709544|ref|ZP_19944611.1| protein tolB [Escherichia coli KTE6]
gi|432712405|ref|ZP_19947455.1| protein tolB [Escherichia coli KTE8]
gi|432717783|ref|ZP_19952781.1| protein tolB [Escherichia coli KTE9]
gi|432722257|ref|ZP_19957181.1| protein tolB [Escherichia coli KTE17]
gi|432726799|ref|ZP_19961681.1| protein tolB [Escherichia coli KTE18]
gi|432731410|ref|ZP_19966247.1| protein tolB [Escherichia coli KTE45]
gi|432736247|ref|ZP_19971018.1| protein tolB [Escherichia coli KTE42]
gi|432740485|ref|ZP_19975207.1| protein tolB [Escherichia coli KTE23]
gi|432744673|ref|ZP_19979372.1| protein tolB [Escherichia coli KTE43]
gi|432749177|ref|ZP_19983792.1| protein tolB [Escherichia coli KTE29]
gi|432753484|ref|ZP_19988051.1| protein tolB [Escherichia coli KTE22]
gi|432758489|ref|ZP_19992991.1| protein tolB [Escherichia coli KTE46]
gi|432764065|ref|ZP_19998514.1| protein tolB [Escherichia coli KTE48]
gi|432769590|ref|ZP_20003944.1| protein tolB [Escherichia coli KTE50]
gi|432773918|ref|ZP_20008205.1| protein tolB [Escherichia coli KTE54]
gi|432777623|ref|ZP_20011874.1| protein tolB [Escherichia coli KTE59]
gi|432782586|ref|ZP_20016771.1| protein tolB [Escherichia coli KTE63]
gi|432786412|ref|ZP_20020578.1| protein tolB [Escherichia coli KTE65]
gi|432791959|ref|ZP_20026050.1| protein tolB [Escherichia coli KTE78]
gi|432797922|ref|ZP_20031948.1| protein tolB [Escherichia coli KTE79]
gi|432800968|ref|ZP_20034955.1| protein tolB [Escherichia coli KTE84]
gi|432804820|ref|ZP_20038762.1| protein tolB [Escherichia coli KTE91]
gi|432812845|ref|ZP_20046691.1| protein tolB [Escherichia coli KTE101]
gi|432814277|ref|ZP_20048068.1| protein tolB [Escherichia coli KTE115]
gi|432820004|ref|ZP_20053718.1| protein tolB [Escherichia coli KTE118]
gi|432826219|ref|ZP_20059875.1| protein tolB [Escherichia coli KTE123]
gi|432830717|ref|ZP_20064301.1| protein tolB [Escherichia coli KTE135]
gi|432833763|ref|ZP_20067306.1| protein tolB [Escherichia coli KTE136]
gi|432838297|ref|ZP_20071787.1| protein tolB [Escherichia coli KTE140]
gi|432842992|ref|ZP_20076386.1| protein tolB [Escherichia coli KTE141]
gi|432849051|ref|ZP_20080421.1| protein tolB [Escherichia coli KTE144]
gi|432859797|ref|ZP_20085549.1| protein tolB [Escherichia coli KTE146]
gi|432880326|ref|ZP_20097017.1| protein tolB [Escherichia coli KTE154]
gi|432885013|ref|ZP_20099693.1| protein tolB [Escherichia coli KTE158]
gi|432893474|ref|ZP_20105486.1| protein tolB [Escherichia coli KTE165]
gi|432897569|ref|ZP_20108465.1| protein tolB [Escherichia coli KTE192]
gi|432903169|ref|ZP_20112694.1| protein tolB [Escherichia coli KTE194]
gi|432911017|ref|ZP_20117581.1| protein tolB [Escherichia coli KTE190]
gi|432917906|ref|ZP_20122374.1| protein tolB [Escherichia coli KTE173]
gi|432925196|ref|ZP_20127287.1| protein tolB [Escherichia coli KTE175]
gi|432933207|ref|ZP_20132928.1| protein tolB [Escherichia coli KTE184]
gi|432945893|ref|ZP_20141675.1| protein tolB [Escherichia coli KTE196]
gi|432953956|ref|ZP_20146132.1| protein tolB [Escherichia coli KTE197]
gi|432960232|ref|ZP_20150438.1| protein tolB [Escherichia coli KTE202]
gi|432966842|ref|ZP_20155759.1| protein tolB [Escherichia coli KTE203]
gi|432970858|ref|ZP_20159736.1| protein tolB [Escherichia coli KTE207]
gi|432977404|ref|ZP_20166228.1| protein tolB [Escherichia coli KTE209]
gi|432980219|ref|ZP_20168998.1| protein tolB [Escherichia coli KTE211]
gi|432984374|ref|ZP_20173112.1| protein tolB [Escherichia coli KTE215]
gi|432989798|ref|ZP_20178465.1| protein tolB [Escherichia coli KTE217]
gi|432994475|ref|ZP_20183090.1| protein tolB [Escherichia coli KTE218]
gi|432998893|ref|ZP_20187432.1| protein tolB [Escherichia coli KTE223]
gi|433004212|ref|ZP_20192650.1| protein tolB [Escherichia coli KTE227]
gi|433011421|ref|ZP_20199826.1| protein tolB [Escherichia coli KTE229]
gi|433012919|ref|ZP_20201296.1| protein tolB [Escherichia coli KTE104]
gi|433017716|ref|ZP_20205978.1| protein tolB [Escherichia coli KTE105]
gi|433022544|ref|ZP_20210558.1| protein tolB [Escherichia coli KTE106]
gi|433027727|ref|ZP_20215601.1| protein tolB [Escherichia coli KTE109]
gi|433032240|ref|ZP_20220015.1| protein tolB [Escherichia coli KTE112]
gi|433037679|ref|ZP_20225294.1| protein tolB [Escherichia coli KTE113]
gi|433042247|ref|ZP_20229772.1| protein tolB [Escherichia coli KTE117]
gi|433052054|ref|ZP_20239284.1| protein tolB [Escherichia coli KTE122]
gi|433057039|ref|ZP_20244122.1| protein tolB [Escherichia coli KTE124]
gi|433061985|ref|ZP_20248943.1| protein tolB [Escherichia coli KTE125]
gi|433066990|ref|ZP_20253818.1| protein tolB [Escherichia coli KTE128]
gi|433071793|ref|ZP_20258489.1| protein tolB [Escherichia coli KTE129]
gi|433076906|ref|ZP_20263469.1| protein tolB [Escherichia coli KTE131]
gi|433081628|ref|ZP_20268102.1| protein tolB [Escherichia coli KTE133]
gi|433086352|ref|ZP_20272749.1| protein tolB [Escherichia coli KTE137]
gi|433091071|ref|ZP_20277368.1| protein tolB [Escherichia coli KTE138]
gi|433095642|ref|ZP_20281853.1| protein tolB [Escherichia coli KTE139]
gi|433100255|ref|ZP_20286364.1| protein tolB [Escherichia coli KTE145]
gi|433104851|ref|ZP_20290870.1| protein tolB [Escherichia coli KTE148]
gi|433110020|ref|ZP_20295895.1| protein tolB [Escherichia coli KTE150]
gi|433114630|ref|ZP_20300445.1| protein tolB [Escherichia coli KTE153]
gi|433119295|ref|ZP_20305003.1| protein tolB [Escherichia coli KTE157]
gi|433124289|ref|ZP_20309877.1| protein tolB [Escherichia coli KTE160]
gi|433129096|ref|ZP_20314566.1| protein tolB [Escherichia coli KTE163]
gi|433133910|ref|ZP_20319285.1| protein tolB [Escherichia coli KTE166]
gi|433138349|ref|ZP_20323634.1| protein tolB [Escherichia coli KTE167]
gi|433143322|ref|ZP_20328489.1| protein tolB [Escherichia coli KTE168]
gi|433148136|ref|ZP_20333201.1| protein tolB [Escherichia coli KTE174]
gi|433152836|ref|ZP_20337803.1| protein tolB [Escherichia coli KTE176]
gi|433157713|ref|ZP_20342582.1| protein tolB [Escherichia coli KTE177]
gi|433162537|ref|ZP_20347296.1| protein tolB [Escherichia coli KTE179]
gi|433167546|ref|ZP_20352214.1| protein tolB [Escherichia coli KTE180]
gi|433172574|ref|ZP_20357129.1| protein tolB [Escherichia coli KTE232]
gi|433177223|ref|ZP_20361675.1| protein tolB [Escherichia coli KTE82]
gi|433182281|ref|ZP_20366578.1| protein tolB [Escherichia coli KTE85]
gi|433192685|ref|ZP_20376700.1| protein tolB [Escherichia coli KTE90]
gi|433197304|ref|ZP_20381228.1| protein tolB [Escherichia coli KTE94]
gi|433202231|ref|ZP_20386032.1| protein tolB [Escherichia coli KTE95]
gi|433206863|ref|ZP_20390560.1| protein tolB [Escherichia coli KTE97]
gi|433211613|ref|ZP_20395226.1| protein tolB [Escherichia coli KTE99]
gi|433323423|ref|ZP_20400772.1| translocation protein TolB [Escherichia coli J96]
gi|442606295|ref|ZP_21021095.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli Nissle 1917]
gi|443616765|ref|YP_007380621.1| translocation protein TolB [Escherichia coli APEC O78]
gi|444923090|ref|ZP_21242795.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
09BKT078844]
gi|444929422|ref|ZP_21248568.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0814]
gi|444937121|ref|ZP_21255903.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0815]
gi|444940317|ref|ZP_21258958.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0816]
gi|444945937|ref|ZP_21264351.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0839]
gi|444951461|ref|ZP_21269680.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0848]
gi|444956915|ref|ZP_21274908.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1753]
gi|444962222|ref|ZP_21279968.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1775]
gi|444973450|ref|ZP_21290725.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1805]
gi|444978994|ref|ZP_21295984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 700728]
gi|444984286|ref|ZP_21301151.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA11]
gi|444989529|ref|ZP_21306265.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA19]
gi|444994880|ref|ZP_21311472.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA13]
gi|445000382|ref|ZP_21316840.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA2]
gi|445005842|ref|ZP_21322177.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA47]
gi|445013215|ref|ZP_21329327.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA48]
gi|445016783|ref|ZP_21332828.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA8]
gi|445027483|ref|ZP_21343256.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1781]
gi|445032977|ref|ZP_21348596.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1762]
gi|445038670|ref|ZP_21354136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA35]
gi|445043971|ref|ZP_21359304.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4880]
gi|445049457|ref|ZP_21364619.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0083]
gi|445055112|ref|ZP_21370058.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0670]
gi|450186382|ref|ZP_21889467.1| translocation protein TolB [Escherichia coli SEPT362]
gi|450212099|ref|ZP_21894472.1| translocation protein TolB [Escherichia coli O08]
gi|450261185|ref|ZP_21903133.1| translocation protein TolB [Escherichia coli S17]
gi|452969627|ref|ZP_21967854.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4009]
gi|67473560|sp|P0A855.1|TOLB_ECOLI RecName: Full=Protein TolB; Flags: Precursor
gi|67473563|sp|P0A856.1|TOLB_ECOL6 RecName: Full=Protein TolB; Flags: Precursor
gi|67473564|sp|P0A857.1|TOLB_ECO57 RecName: Full=Protein TolB; Flags: Precursor
gi|118574579|sp|Q0TJV4.1|TOLB_ECOL5 RecName: Full=Protein TolB; Flags: Precursor
gi|118574580|sp|Q1REI5.2|TOLB_ECOUT RecName: Full=Protein TolB; Flags: Precursor
gi|119371062|sp|Q3Z464.1|TOLB_SHISS RecName: Full=Protein TolB; Flags: Precursor
gi|166988075|sp|A7ZJC2.1|TOLB_ECO24 RecName: Full=Protein TolB; Flags: Precursor
gi|189035982|sp|B1IXY9.1|TOLB_ECOLC RecName: Full=Protein TolB; Flags: Precursor
gi|226705876|sp|B7MFZ3.1|TOLB_ECO45 RecName: Full=Protein TolB; Flags: Precursor
gi|226705877|sp|B5YRE4.1|TOLB_ECO5E RecName: Full=Protein TolB; Flags: Precursor
gi|226705878|sp|B7NMV9.1|TOLB_ECO7I RecName: Full=Protein TolB; Flags: Precursor
gi|226705880|sp|B1X6S1.1|TOLB_ECODH RecName: Full=Protein TolB; Flags: Precursor
gi|226705881|sp|B7N9Y9.1|TOLB_ECOLU RecName: Full=Protein TolB; Flags: Precursor
gi|254764839|sp|B7ULM0.1|TOLB_ECO27 RecName: Full=Protein TolB; Flags: Precursor
gi|254764840|sp|B7LAE7.1|TOLB_ECO55 RecName: Full=Protein TolB; Flags: Precursor
gi|254764841|sp|B7MPN1.1|TOLB_ECO81 RecName: Full=Protein TolB; Flags: Precursor
gi|259533852|sp|C4ZWL5.1|TOLB_ECOBW RecName: Full=Protein TolB; Flags: Precursor
gi|12513673|gb|AAG55076.1|AE005252_12 periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli O157:H7 str. EDL933]
gi|1786961|gb|AAC73834.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655]
gi|13360234|dbj|BAB34198.1| periplasmic protein TolB [Escherichia coli O157:H7 str. Sakai]
gi|30040341|gb|AAP16074.1| periplasmic protein [Shigella flexneri 2a str. 2457T]
gi|73854741|gb|AAZ87448.1| periplasmic protein [Shigella sonnei Ss046]
gi|85674752|dbj|BAA35406.2| periplasmic protein [Escherichia coli str. K12 substr. W3110]
gi|110342540|gb|ABG68777.1| TolB protein precursor [Escherichia coli 536]
gi|157076992|gb|ABV16700.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E24377A]
gi|169755843|gb|ACA78542.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 8739]
gi|169888242|gb|ACB01949.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B]
gi|188491621|gb|EDU66724.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
53638]
gi|189002974|gb|EDU71960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4076]
gi|189363589|gb|EDU82008.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4486]
gi|189373020|gb|EDU91436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC869]
gi|208728668|gb|EDZ78269.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4206]
gi|208732386|gb|EDZ81074.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4045]
gi|209161261|gb|ACI38694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4115]
gi|209776388|gb|ACI86506.1| periplasmic protein TolB [Escherichia coli]
gi|209776390|gb|ACI86507.1| periplasmic protein TolB [Escherichia coli]
gi|209776392|gb|ACI86508.1| periplasmic protein TolB [Escherichia coli]
gi|209776396|gb|ACI86510.1| periplasmic protein TolB [Escherichia coli]
gi|215263834|emb|CAS08172.1| periplasmic protein TolB [Escherichia coli O127:H6 str. E2348/69]
gi|217320613|gb|EEC29037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. TW14588]
gi|218350896|emb|CAU96594.1| periplasmic protein [Escherichia coli 55989]
gi|218364422|emb|CAR02102.1| periplasmic protein [Escherichia coli S88]
gi|218369098|emb|CAR16852.1| periplasmic protein [Escherichia coli IAI39]
gi|218426095|emb|CAR06913.1| periplasmic protein [Escherichia coli ED1a]
gi|218431164|emb|CAR12040.1| periplasmic protein [Escherichia coli UMN026]
gi|222032476|emb|CAP75215.1| Protein tolB [Escherichia coli LF82]
gi|238862004|gb|ACR64002.1| periplasmic protein [Escherichia coli BW2952]
gi|242376502|emb|CAQ31206.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4
Transport System and The Colicin A Import System
[Escherichia coli BL21(DE3)]
gi|253325333|gb|ACT29935.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972711|gb|ACT38382.1| translocation protein TolB precursor [Escherichia coli B str.
REL606]
gi|253976905|gb|ACT42575.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)]
gi|254591297|gb|ACT70658.1| periplasmic protein [Escherichia coli O157:H7 str. TW14359]
gi|257752624|dbj|BAI24126.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368]
gi|257758093|dbj|BAI29590.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009]
gi|257763227|dbj|BAI34722.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128]
gi|260450106|gb|ACX40528.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DH1]
gi|281177883|dbj|BAI54213.1| TolB protein [Escherichia coli SE15]
gi|281599944|gb|ADA72928.1| Protein tolB precursor [Shigella flexneri 2002017]
gi|284920527|emb|CBG33589.1| colicin import protein [Escherichia coli 042]
gi|291323827|gb|EFE63249.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B088]
gi|291428581|gb|EFF01606.1| tolB [Escherichia coli FVEC1412]
gi|291434083|gb|EFF07056.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B185]
gi|291469592|gb|EFF12076.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B354]
gi|294492013|gb|ADE90769.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
IHE3034]
gi|298279473|gb|EFI20981.1| tolB [Escherichia coli FVEC1302]
gi|305853616|gb|EFM54055.1| translocation protein TolB [Escherichia coli NC101]
gi|306905693|gb|EFN36221.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W]
gi|307552591|gb|ADN45366.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ABU 83972]
gi|307627846|gb|ADN72150.1| translocation protein TolB [Escherichia coli UM146]
gi|309700962|emb|CBJ00259.1| colicin import protein [Escherichia coli ETEC H10407]
gi|310336580|gb|EFQ01747.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1827-70]
gi|312290267|gb|EFR18150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2362-75]
gi|312945264|gb|ADR26091.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C]
gi|313649617|gb|EFS14041.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2a str. 2457T]
gi|315059983|gb|ADT74310.1| periplasmic protein [Escherichia coli W]
gi|315135397|dbj|BAJ42556.1| tolB [Escherichia coli DH1]
gi|315614616|gb|EFU95258.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3431]
gi|320179419|gb|EFW54376.1| translocation protein TolB [Shigella boydii ATCC 9905]
gi|320193145|gb|EFW67785.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212]
gi|320198140|gb|EFW72744.1| translocation protein TolB [Escherichia coli EC4100B]
gi|320637998|gb|EFX07767.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101]
gi|320643394|gb|EFX12574.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89]
gi|320648688|gb|EFX17324.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687]
gi|320654326|gb|EFX22379.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320659958|gb|EFX27500.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905]
gi|320664784|gb|EFX31922.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61]
gi|323153744|gb|EFZ39991.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa14]
gi|323158792|gb|EFZ44805.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E128010]
gi|323163899|gb|EFZ49709.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
53G]
gi|323180020|gb|EFZ65576.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1180]
gi|323185099|gb|EFZ70465.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1357]
gi|323191085|gb|EFZ76350.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
RN587/1]
gi|323379457|gb|ADX51725.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
KO11FL]
gi|323942963|gb|EGB39127.1| tol-Pal system beta propeller TolB [Escherichia coli E482]
gi|323953134|gb|EGB49001.1| tol-Pal system beta propeller TolB [Escherichia coli H252]
gi|323958484|gb|EGB54190.1| tol-Pal system beta propeller TolB [Escherichia coli H263]
gi|323967343|gb|EGB62764.1| tol-Pal system beta propeller TolB [Escherichia coli M863]
gi|323976279|gb|EGB71369.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509]
gi|324116282|gb|EGC10203.1| tol-Pal system beta propeller TolB [Escherichia coli E1167]
gi|326341511|gb|EGD65301.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044]
gi|326345730|gb|EGD69469.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125]
gi|327254429|gb|EGE66051.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_7v]
gi|330910491|gb|EGH39001.1| TolB protein precursor [Escherichia coli AA86]
gi|331038039|gb|EGI10259.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H736]
gi|331044643|gb|EGI16770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M605]
gi|331050026|gb|EGI22084.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M718]
gi|331060522|gb|EGI32486.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA143]
gi|331065463|gb|EGI37356.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA271]
gi|331075915|gb|EGI47212.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H591]
gi|331080594|gb|EGI51770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H299]
gi|332093801|gb|EGI98855.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
5216-82]
gi|332342077|gb|AEE55411.1| translocation protein TolB [Escherichia coli UMNK88]
gi|332760891|gb|EGJ91179.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 4343-70]
gi|332761319|gb|EGJ91605.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2747-71]
gi|332763940|gb|EGJ94178.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-671]
gi|332768161|gb|EGJ98346.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2930-71]
gi|333007349|gb|EGK26829.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri VA-6]
gi|333008017|gb|EGK27493.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-218]
gi|333010141|gb|EGK29576.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-272]
gi|333021093|gb|EGK40350.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-227]
gi|333021479|gb|EGK40729.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-304]
gi|333968694|gb|AEG35499.1| Translocation protein [Escherichia coli NA114]
gi|339413692|gb|AEJ55364.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
UMNF18]
gi|340735469|gb|EGR64526.1| translocation protein TolB [Escherichia coli O104:H4 str. 01-09591]
gi|340741341|gb|EGR75489.1| translocation protein TolB [Escherichia coli O104:H4 str. LB226692]
gi|342363207|gb|EGU27317.1| translocation protein TolB [Escherichia coli XH140A]
gi|344192053|gb|EGV46153.1| translocation protein TolB [Escherichia coli XH001]
gi|345341059|gb|EGW73475.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_C165-02]
gi|345343196|gb|EGW75586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_B2F1]
gi|345344960|gb|EGW77319.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2534-86]
gi|345353084|gb|EGW85320.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_94C]
gi|345364255|gb|EGW96381.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_DG131-3]
gi|345365128|gb|EGW97237.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_EH250]
gi|345377975|gb|EGX09906.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_MHI813]
gi|345380352|gb|EGX12251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
G58-1]
gi|345385509|gb|EGX15353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_H.1.8]
gi|345390059|gb|EGX19858.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_S1191]
gi|345395193|gb|EGX24944.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TX1999]
gi|349736870|gb|AEQ11576.1| periplasmic protein [Escherichia coli O7:K1 str. CE10]
gi|354856422|gb|EHF16880.1| protein tolB [Escherichia coli O104:H4 str. 04-8351]
gi|354857668|gb|EHF18121.1| protein tolB [Escherichia coli O104:H4 str. C227-11]
gi|354864436|gb|EHF24865.1| protein tolB [Escherichia coli O104:H4 str. C236-11]
gi|354874750|gb|EHF35116.1| protein tolB [Escherichia coli O104:H4 str. 09-7901]
gi|354878709|gb|EHF39056.1| protein tolB [Escherichia coli O104:H4 str. 11-4404]
gi|354882501|gb|EHF42823.1| protein tolB [Escherichia coli O104:H4 str. 11-3677]
gi|354885093|gb|EHF45402.1| protein tolB [Escherichia coli O104:H4 str. 11-4522]
gi|354887783|gb|EHF48052.1| protein tolB [Escherichia coli O104:H4 str. 11-4623]
gi|354900375|gb|EHF60509.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354903953|gb|EHF64050.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354906359|gb|EHF66437.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917256|gb|EHF77223.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354921611|gb|EHF81534.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355352653|gb|EHG01827.1| An Essential Component Of The Tol- Dependent Translocation System
[Escherichia coli cloneA_i1]
gi|359331439|dbj|BAL37886.1| periplasmic protein [Escherichia coli str. K-12 substr. MDS42]
gi|371595401|gb|EHN84251.1| protein tolB [Escherichia coli H494]
gi|371610230|gb|EHN98760.1| tolB [Escherichia coli H397]
gi|371615963|gb|EHO04340.1| tolB [Escherichia coli B093]
gi|373248034|gb|EHP67467.1| protein tolB [Escherichia coli 4_1_47FAA]
gi|375320454|gb|EHS66409.1| translocation protein TolB [Escherichia coli O157:H43 str. T22]
gi|377850295|gb|EHU15260.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1C]
gi|377853176|gb|EHU18078.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1B]
gi|377863029|gb|EHU27836.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1D]
gi|377867147|gb|EHU31911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1E]
gi|377868499|gb|EHU33243.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2A]
gi|377879444|gb|EHU44017.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2B]
gi|377883781|gb|EHU48299.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2D]
gi|377885047|gb|EHU49551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2C]
gi|377898052|gb|EHU62415.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2E]
gi|377900185|gb|EHU64523.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3A]
gi|377902174|gb|EHU66483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3B]
gi|377913525|gb|EHU77662.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3C]
gi|377917526|gb|EHU81586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3D]
gi|377920247|gb|EHU84273.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3E]
gi|377931543|gb|EHU95405.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3F]
gi|377933204|gb|EHU97049.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4A]
gi|377938937|gb|EHV02696.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4B]
gi|377949385|gb|EHV13021.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4C]
gi|377951244|gb|EHV14863.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4D]
gi|377953994|gb|EHV17555.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5A]
gi|377954305|gb|EHV17865.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4E]
gi|377967705|gb|EHV31111.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4F]
gi|377971858|gb|EHV35211.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5B]
gi|377987528|gb|EHV50714.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5E]
gi|377998069|gb|EHV61166.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6B]
gi|377998877|gb|EHV61964.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6A]
gi|378002856|gb|EHV65905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6C]
gi|378012532|gb|EHV75461.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6D]
gi|378016123|gb|EHV79011.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6E]
gi|378017950|gb|EHV80817.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7A]
gi|378026898|gb|EHV89530.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7C]
gi|378032690|gb|EHV95271.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7D]
gi|378037016|gb|EHV99551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7B]
gi|378040787|gb|EHW03250.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7E]
gi|378052045|gb|EHW14356.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8A]
gi|378056225|gb|EHW18472.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8B]
gi|378061827|gb|EHW24007.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8C]
gi|378067670|gb|EHW29783.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8D]
gi|378071859|gb|EHW33926.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8E]
gi|378081045|gb|EHW43001.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9A]
gi|378081729|gb|EHW43678.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9B]
gi|378089849|gb|EHW51690.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9C]
gi|378094464|gb|EHW56262.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9D]
gi|378101163|gb|EHW62851.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9E]
gi|378106245|gb|EHW67876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10A]
gi|378115406|gb|EHW76946.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10B]
gi|378118258|gb|EHW79764.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10C]
gi|378121160|gb|EHW82618.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10D]
gi|378132127|gb|EHW93479.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10E]
gi|378135703|gb|EHW97006.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11A]
gi|378138628|gb|EHW99881.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10F]
gi|378145736|gb|EHX06892.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11B]
gi|378152419|gb|EHX13516.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11D]
gi|378155811|gb|EHX16867.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11C]
gi|378160649|gb|EHX21642.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11E]
gi|378173718|gb|EHX34552.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12B]
gi|378174074|gb|EHX34902.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12A]
gi|378175687|gb|EHX36502.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12C]
gi|378188796|gb|EHX49390.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13A]
gi|378190316|gb|EHX50901.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12D]
gi|378193423|gb|EHX53962.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12E]
gi|378204468|gb|EHX64884.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13B]
gi|378207698|gb|EHX68087.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13D]
gi|378208012|gb|EHX68397.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13C]
gi|378218766|gb|EHX79036.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13E]
gi|378221668|gb|EHX81913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14A]
gi|378224471|gb|EHX84673.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14B]
gi|378233067|gb|EHX93159.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14C]
gi|378236485|gb|EHX96531.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14D]
gi|378242902|gb|EHY02850.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15A]
gi|378250788|gb|EHY10691.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15B]
gi|378250969|gb|EHY10870.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15C]
gi|378257121|gb|EHY16963.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15D]
gi|378261007|gb|EHY20804.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15E]
gi|380349240|gb|EIA37514.1| translocation protein TolB [Escherichia coli SCI-07]
gi|383102076|gb|AFG39585.1| Protein tolB precursor [Escherichia coli P12b]
gi|383394017|gb|AFH18975.1| translocation protein TolB [Escherichia coli KO11FL]
gi|383404200|gb|AFH10443.1| translocation protein TolB [Escherichia coli W]
gi|385154090|gb|EIF16109.1| translocation protein TolB [Escherichia coli O32:H37 str. P4]
gi|385539803|gb|EIF86633.1| protein tolB [Escherichia coli M919]
gi|385707387|gb|EIG44418.1| protein tolB [Escherichia coli B799]
gi|385712442|gb|EIG49394.1| protein tolB [Escherichia coli H730]
gi|386123171|gb|EIG71771.1| protein tolB [Escherichia sp. 4_1_40B]
gi|386138224|gb|EIG79384.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2741]
gi|386169232|gb|EIH35740.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0497]
gi|386174117|gb|EIH46118.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0741]
gi|386179581|gb|EIH57060.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2608]
gi|386186309|gb|EIH69026.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0624]
gi|386190649|gb|EIH79397.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0522]
gi|386200245|gb|EIH99236.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.154]
gi|386206864|gb|EII11370.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0959]
gi|386217192|gb|EII33681.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0967]
gi|386232767|gb|EII64752.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.4168]
gi|386242765|gb|EII84500.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3003]
gi|386247694|gb|EII93867.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07793]
gi|386255978|gb|EIJ05666.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B41]
gi|386262120|gb|EIJ17567.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
900105 (10e)]
gi|386794768|gb|AFJ27802.1| translocation protein TolB [Escherichia coli Xuzhou21]
gi|388334155|gb|EIL00761.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9534]
gi|388336273|gb|EIL02820.1| translocation protein TolB [Escherichia coli O103:H25 str. CVM9340]
gi|388337650|gb|EIL04147.1| translocation protein TolB [Escherichia coli O103:H2 str. CVM9450]
gi|388346987|gb|EIL12687.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9545]
gi|388357172|gb|EIL21764.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9570]
gi|388358921|gb|EIL23305.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9574]
gi|388366008|gb|EIL29765.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9942]
gi|388378226|gb|EIL40984.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli O26:H11 str. CVM10026]
gi|388389994|gb|EIL51498.1| translocation protein TolB [Escherichia coli 541-15]
gi|388393140|gb|EIL54533.1| translocation protein TolB [Escherichia coli KD2]
gi|388401305|gb|EIL61959.1| translocation protein TolB [Escherichia coli 576-1]
gi|388401527|gb|EIL62167.1| translocation protein TolB [Escherichia coli 75]
gi|388404879|gb|EIL65322.1| translocation protein TolB [Escherichia coli 541-1]
gi|388412743|gb|EIL72780.1| translocation protein TolB [Escherichia coli CUMT8]
gi|388416106|gb|EIL76008.1| translocation protein TolB [Escherichia coli HM605]
gi|390650393|gb|EIN28809.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1996]
gi|390652410|gb|EIN30630.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA517]
gi|390652755|gb|EIN30939.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA505]
gi|390669418|gb|EIN46061.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93-001]
gi|390672367|gb|EIN48672.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1990]
gi|390672928|gb|EIN49184.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1985]
gi|390688317|gb|EIN63395.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA3]
gi|390691622|gb|EIN66358.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA9]
gi|390692528|gb|EIN67210.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA5]
gi|390708071|gb|EIN81354.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA10]
gi|390709850|gb|EIN82905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA15]
gi|390711364|gb|EIN84338.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA14]
gi|390714415|gb|EIN87320.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA22]
gi|390733012|gb|EIO04611.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA24]
gi|390733105|gb|EIO04701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA25]
gi|390736232|gb|EIO07574.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA28]
gi|390751497|gb|EIO21389.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA31]
gi|390751745|gb|EIO21619.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA32]
gi|390754437|gb|EIO24021.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA33]
gi|390762718|gb|EIO31976.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA40]
gi|390775771|gb|EIO43771.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA41]
gi|390777651|gb|EIO45438.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA42]
gi|390782331|gb|EIO49973.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA39]
gi|390785276|gb|EIO52827.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW06591]
gi|390794506|gb|EIO61797.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10246]
gi|390801338|gb|EIO68399.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW11039]
gi|390808888|gb|EIO75707.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09109]
gi|390809069|gb|EIO75875.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07945]
gi|390818952|gb|EIO85308.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10119]
gi|390822264|gb|EIO88392.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09098]
gi|390836831|gb|EIP01310.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4203]
gi|390839527|gb|EIP03629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4196]
gi|390840721|gb|EIP04725.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09195]
gi|390855049|gb|EIP17801.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14301]
gi|390858626|gb|EIP21003.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14313]
gi|390858771|gb|EIP21140.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4421]
gi|390871325|gb|EIP32753.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4422]
gi|390875608|gb|EIP36617.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4013]
gi|390885611|gb|EIP45818.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4402]
gi|390887664|gb|EIP47600.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4439]
gi|390894150|gb|EIP53682.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4436]
gi|390903559|gb|EIP62605.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1738]
gi|390910032|gb|EIP68795.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4437]
gi|390911651|gb|EIP70345.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1734]
gi|390914104|gb|EIP72649.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4448]
gi|390924508|gb|EIP82266.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1863]
gi|390925926|gb|EIP83534.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1845]
gi|391259051|gb|EIQ18132.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-1770]
gi|391273405|gb|EIQ32230.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-404]
gi|391288335|gb|EIQ46840.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3226-85]
gi|391296573|gb|EIQ54662.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
4822-66]
gi|391309204|gb|EIQ66881.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa12]
gi|391314474|gb|EIQ72024.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPEC C342-62]
gi|394389121|gb|EJE66312.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9634]
gi|394390901|gb|EJE67830.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10224]
gi|394402928|gb|EJE78608.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10021]
gi|394406870|gb|EJE81783.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9553]
gi|394413335|gb|EJE87377.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9455]
gi|394421445|gb|EJE94917.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9952]
gi|394424204|gb|EJE97378.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10030]
gi|397786434|gb|EJK97270.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_O31]
gi|397900980|gb|EJL17334.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 6603-63]
gi|397902943|gb|EJL19252.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
str. Moseley]
gi|404292426|gb|EJZ49250.1| protein tolB [Escherichia sp. 1_1_43]
gi|406778827|gb|AFS58251.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055409|gb|AFS75460.1| translocation protein TolB [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064191|gb|AFS85238.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408071897|gb|EKH06228.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA7]
gi|408075634|gb|EKH09866.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK920]
gi|408085751|gb|EKH19331.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA34]
gi|408089544|gb|EKH22849.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA506]
gi|408094940|gb|EKH27935.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA507]
gi|408101856|gb|EKH34283.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA504]
gi|408109696|gb|EKH41574.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1999]
gi|408116322|gb|EKH47631.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1997]
gi|408121768|gb|EKH52674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE1487]
gi|408129989|gb|EKH60186.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE037]
gi|408131883|gb|EKH61900.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK2001]
gi|408150042|gb|EKH78661.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA23]
gi|408152234|gb|EKH80676.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA49]
gi|408157455|gb|EKH85607.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA45]
gi|408171800|gb|EKH98900.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MA6]
gi|408173967|gb|EKI00965.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5905]
gi|408186580|gb|EKI12612.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
CB7326]
gi|408191196|gb|EKI16813.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC96038]
gi|408191480|gb|EKI17086.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5412]
gi|408206636|gb|EKI31417.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ARS4.2123]
gi|408218088|gb|EKI42321.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3006]
gi|408221336|gb|EKI45290.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
07798]
gi|408231372|gb|EKI54646.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
N1]
gi|408232522|gb|EKI55718.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA38]
gi|408238399|gb|EKI61204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1735]
gi|408248715|gb|EKI70720.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1736]
gi|408252473|gb|EKI74119.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1737]
gi|408258828|gb|EKI80052.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1846]
gi|408268071|gb|EKI88483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1847]
gi|408269384|gb|EKI89630.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1848]
gi|408278589|gb|EKI98297.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1849]
gi|408284838|gb|EKJ03906.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1850]
gi|408287250|gb|EKJ06130.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1856]
gi|408300141|gb|EKJ17875.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1862]
gi|408300444|gb|EKJ18144.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1864]
gi|408309252|gb|EKJ26448.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1865]
gi|408316860|gb|EKJ33114.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1868]
gi|408317463|gb|EKJ33699.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1866]
gi|408331135|gb|EKJ46336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1869]
gi|408336250|gb|EKJ51047.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE098]
gi|408337871|gb|EKJ52554.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1870]
gi|408347230|gb|EKJ61460.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1288]
gi|408350310|gb|EKJ64193.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK523]
gi|408352887|gb|EKJ66417.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1304]
gi|408558239|gb|EKK34623.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.2239]
gi|408558676|gb|EKK35036.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4870]
gi|408559818|gb|EKK36118.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
6.0172]
gi|408568672|gb|EKK44698.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0569]
gi|408584962|gb|EKK59877.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0586]
gi|408589397|gb|EKK63912.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.2524]
gi|408591285|gb|EKK65728.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0833]
gi|408603846|gb|EKK77462.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0869]
gi|408605323|gb|EKK78839.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0416]
gi|408609300|gb|EKK82682.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.0221]
gi|408616701|gb|EKK89846.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0821]
gi|412961987|emb|CCK45900.1| periplasmic protein [Escherichia coli chi7122]
gi|412968574|emb|CCJ43199.1| periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli]
gi|421940334|gb|EKT97808.1| translocation protein TolB [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421942025|gb|EKT99384.1| translocation protein TolB [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421944430|gb|EKU01684.1| translocation protein TolB [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427216210|gb|EKV85347.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
89.0511]
gi|427216505|gb|EKV85624.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1467]
gi|427233393|gb|EKW01143.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.2281]
gi|427233513|gb|EKW01251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0039]
gi|427235722|gb|EKW03336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0091]
gi|427251044|gb|EKW17648.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0056]
gi|427252515|gb|EKW19000.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0055]
gi|427253771|gb|EKW20165.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
94.0618]
gi|427265074|gb|EKW30697.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.1288]
gi|427269930|gb|EKW34837.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0943]
gi|427269985|gb|EKW34886.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0183]
gi|427286019|gb|EKW49909.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0428]
gi|427291493|gb|EKW54891.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0427]
gi|427293257|gb|EKW56518.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0939]
gi|427304467|gb|EKW67112.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0003]
gi|427310177|gb|EKW72441.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0107]
gi|427321066|gb|EKW82778.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.1742]
gi|427321765|gb|EKW83435.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0007]
gi|427333715|gb|EKW94811.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0713]
gi|427333809|gb|EKW94897.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0678]
gi|427336505|gb|EKW97467.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0672]
gi|429259597|gb|EKY43251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0109]
gi|429261572|gb|EKY44986.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0010]
gi|429350536|gb|EKY87266.1| protein tolB [Escherichia coli O104:H4 str. 11-02030]
gi|429351951|gb|EKY88670.1| protein tolB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352557|gb|EKY89271.1| protein tolB [Escherichia coli O104:H4 str. 11-02092]
gi|429367192|gb|EKZ03793.1| protein tolB [Escherichia coli O104:H4 str. 11-02093]
gi|429368103|gb|EKZ04695.1| protein tolB [Escherichia coli O104:H4 str. 11-02281]
gi|429369840|gb|EKZ06414.1| protein tolB [Escherichia coli O104:H4 str. 11-02318]
gi|429381885|gb|EKZ18360.1| protein tolB [Escherichia coli O104:H4 str. 11-02913]
gi|429385218|gb|EKZ21672.1| protein tolB [Escherichia coli O104:H4 str. 11-03943]
gi|429385741|gb|EKZ22194.1| protein tolB [Escherichia coli O104:H4 str. 11-03439]
gi|429397434|gb|EKZ33781.1| protein tolB [Escherichia coli O104:H4 str. 11-04080]
gi|429398014|gb|EKZ34358.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429398387|gb|EKZ34729.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429409163|gb|EKZ45393.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429417623|gb|EKZ53770.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421291|gb|EKZ57412.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429423032|gb|EKZ59140.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429427033|gb|EKZ63118.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434521|gb|EKZ70547.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439504|gb|EKZ75487.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429443774|gb|EKZ79722.1| protein tolB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450552|gb|EKZ86447.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0466]
gi|429455866|gb|EKZ91714.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9941]
gi|430878364|gb|ELC01794.1| protein tolB [Escherichia coli KTE2]
gi|430879841|gb|ELC03172.1| protein tolB [Escherichia coli KTE4]
gi|430888404|gb|ELC11123.1| protein tolB [Escherichia coli KTE10]
gi|430890021|gb|ELC12668.1| protein tolB [Escherichia coli KTE5]
gi|430900957|gb|ELC22971.1| protein tolB [Escherichia coli KTE12]
gi|430909473|gb|ELC30845.1| protein tolB [Escherichia coli KTE16]
gi|430911138|gb|ELC32427.1| protein tolB [Escherichia coli KTE15]
gi|430917599|gb|ELC38643.1| protein tolB [Escherichia coli KTE25]
gi|430922008|gb|ELC42829.1| protein tolB [Escherichia coli KTE21]
gi|430928651|gb|ELC49199.1| protein tolB [Escherichia coli KTE26]
gi|430932478|gb|ELC52901.1| protein tolB [Escherichia coli KTE28]
gi|430937246|gb|ELC57501.1| protein tolB [Escherichia coli KTE39]
gi|430943244|gb|ELC63369.1| protein tolB [Escherichia coli KTE44]
gi|430947294|gb|ELC67001.1| protein tolB [Escherichia coli KTE178]
gi|430955891|gb|ELC74574.1| protein tolB [Escherichia coli KTE187]
gi|430958846|gb|ELC77423.1| protein tolB [Escherichia coli KTE181]
gi|430966524|gb|ELC83930.1| protein tolB [Escherichia coli KTE188]
gi|430969132|gb|ELC86288.1| protein tolB [Escherichia coli KTE189]
gi|430974133|gb|ELC91071.1| protein tolB [Escherichia coli KTE193]
gi|430975585|gb|ELC92478.1| protein tolB [Escherichia coli KTE191]
gi|430984832|gb|ELD01452.1| protein tolB [Escherichia coli KTE201]
gi|430991712|gb|ELD08115.1| protein tolB [Escherichia coli KTE204]
gi|430996923|gb|ELD13196.1| protein tolB [Escherichia coli KTE205]
gi|431000182|gb|ELD16256.1| protein tolB [Escherichia coli KTE206]
gi|431009202|gb|ELD23826.1| protein tolB [Escherichia coli KTE208]
gi|431009787|gb|ELD24397.1| protein tolB [Escherichia coli KTE210]
gi|431017985|gb|ELD31436.1| protein tolB [Escherichia coli KTE212]
gi|431024116|gb|ELD37309.1| protein tolB [Escherichia coli KTE213]
gi|431027654|gb|ELD40714.1| protein tolB [Escherichia coli KTE214]
gi|431031859|gb|ELD44592.1| protein tolB [Escherichia coli KTE216]
gi|431041747|gb|ELD52243.1| protein tolB [Escherichia coli KTE220]
gi|431044498|gb|ELD54771.1| protein tolB [Escherichia coli KTE224]
gi|431044788|gb|ELD55047.1| protein tolB [Escherichia coli KTE228]
gi|431054393|gb|ELD63971.1| protein tolB [Escherichia coli KTE230]
gi|431056815|gb|ELD66308.1| protein tolB [Escherichia coli KTE233]
gi|431063242|gb|ELD72492.1| protein tolB [Escherichia coli KTE234]
gi|431073063|gb|ELD80800.1| protein tolB [Escherichia coli KTE235]
gi|431077129|gb|ELD84397.1| protein tolB [Escherichia coli KTE236]
gi|431084775|gb|ELD90902.1| protein tolB [Escherichia coli KTE237]
gi|431086980|gb|ELD92996.1| protein tolB [Escherichia coli KTE47]
gi|431094163|gb|ELD99813.1| protein tolB [Escherichia coli KTE49]
gi|431098760|gb|ELE04072.1| protein tolB [Escherichia coli KTE51]
gi|431102854|gb|ELE07532.1| protein tolB [Escherichia coli KTE53]
gi|431108063|gb|ELE12225.1| protein tolB [Escherichia coli KTE56]
gi|431111018|gb|ELE14935.1| protein tolB [Escherichia coli KTE55]
gi|431119820|gb|ELE22819.1| protein tolB [Escherichia coli KTE57]
gi|431123457|gb|ELE26195.1| protein tolB [Escherichia coli KTE58]
gi|431132408|gb|ELE34413.1| protein tolB [Escherichia coli KTE60]
gi|431133242|gb|ELE35238.1| protein tolB [Escherichia coli KTE62]
gi|431140266|gb|ELE42041.1| protein tolB [Escherichia coli KTE67]
gi|431143397|gb|ELE45130.1| protein tolB [Escherichia coli KTE66]
gi|431151234|gb|ELE52269.1| protein tolB [Escherichia coli KTE72]
gi|431156958|gb|ELE57619.1| protein tolB [Escherichia coli KTE75]
gi|431162228|gb|ELE62683.1| protein tolB [Escherichia coli KTE76]
gi|431164998|gb|ELE65378.1| protein tolB [Escherichia coli KTE77]
gi|431173945|gb|ELE74015.1| protein tolB [Escherichia coli KTE80]
gi|431184861|gb|ELE84607.1| protein tolB [Escherichia coli KTE83]
gi|431193013|gb|ELE92354.1| protein tolB [Escherichia coli KTE87]
gi|431194366|gb|ELE93631.1| protein tolB [Escherichia coli KTE93]
gi|431202324|gb|ELF01017.1| protein tolB [Escherichia coli KTE111]
gi|431203714|gb|ELF02307.1| protein tolB [Escherichia coli KTE116]
gi|431213179|gb|ELF11096.1| protein tolB [Escherichia coli KTE119]
gi|431218036|gb|ELF15522.1| protein tolB [Escherichia coli KTE142]
gi|431224459|gb|ELF21684.1| protein tolB [Escherichia coli KTE156]
gi|431224562|gb|ELF21783.1| protein tolB [Escherichia coli KTE143]
gi|431229377|gb|ELF26027.1| protein tolB [Escherichia coli KTE161]
gi|431236735|gb|ELF31940.1| protein tolB [Escherichia coli KTE162]
gi|431246540|gb|ELF40804.1| protein tolB [Escherichia coli KTE169]
gi|431246606|gb|ELF40865.1| protein tolB [Escherichia coli KTE171]
gi|431251713|gb|ELF45720.1| protein tolB [Escherichia coli KTE6]
gi|431259356|gb|ELF51730.1| protein tolB [Escherichia coli KTE8]
gi|431266402|gb|ELF57963.1| protein tolB [Escherichia coli KTE9]
gi|431268056|gb|ELF59570.1| protein tolB [Escherichia coli KTE17]
gi|431275508|gb|ELF66537.1| protein tolB [Escherichia coli KTE18]
gi|431278142|gb|ELF69143.1| protein tolB [Escherichia coli KTE45]
gi|431285787|gb|ELF76622.1| protein tolB [Escherichia coli KTE42]
gi|431286614|gb|ELF77440.1| protein tolB [Escherichia coli KTE23]
gi|431294149|gb|ELF84329.1| protein tolB [Escherichia coli KTE43]
gi|431299369|gb|ELF88941.1| protein tolB [Escherichia coli KTE29]
gi|431305094|gb|ELF93610.1| protein tolB [Escherichia coli KTE22]
gi|431311384|gb|ELF99550.1| protein tolB [Escherichia coli KTE46]
gi|431312954|gb|ELG00938.1| protein tolB [Escherichia coli KTE48]
gi|431317934|gb|ELG05704.1| protein tolB [Escherichia coli KTE50]
gi|431320468|gb|ELG08110.1| protein tolB [Escherichia coli KTE54]
gi|431330223|gb|ELG17505.1| protein tolB [Escherichia coli KTE59]
gi|431331571|gb|ELG18822.1| protein tolB [Escherichia coli KTE63]
gi|431341541|gb|ELG28548.1| protein tolB [Escherichia coli KTE65]
gi|431341807|gb|ELG28804.1| protein tolB [Escherichia coli KTE78]
gi|431345247|gb|ELG32173.1| protein tolB [Escherichia coli KTE79]
gi|431350926|gb|ELG37729.1| protein tolB [Escherichia coli KTE84]
gi|431356965|gb|ELG43651.1| protein tolB [Escherichia coli KTE101]
gi|431357005|gb|ELG43689.1| protein tolB [Escherichia coli KTE91]
gi|431367290|gb|ELG53774.1| protein tolB [Escherichia coli KTE115]
gi|431371006|gb|ELG56799.1| protein tolB [Escherichia coli KTE118]
gi|431374415|gb|ELG60007.1| protein tolB [Escherichia coli KTE123]
gi|431379745|gb|ELG64670.1| protein tolB [Escherichia coli KTE135]
gi|431387746|gb|ELG71568.1| protein tolB [Escherichia coli KTE136]
gi|431391555|gb|ELG75195.1| protein tolB [Escherichia coli KTE140]
gi|431397153|gb|ELG80612.1| protein tolB [Escherichia coli KTE141]
gi|431401793|gb|ELG85127.1| protein tolB [Escherichia coli KTE144]
gi|431407758|gb|ELG90964.1| protein tolB [Escherichia coli KTE146]
gi|431413281|gb|ELG96073.1| protein tolB [Escherichia coli KTE154]
gi|431419492|gb|ELH01842.1| protein tolB [Escherichia coli KTE158]
gi|431424454|gb|ELH06550.1| protein tolB [Escherichia coli KTE165]
gi|431429010|gb|ELH10941.1| protein tolB [Escherichia coli KTE192]
gi|431436350|gb|ELH17956.1| protein tolB [Escherichia coli KTE194]
gi|431444366|gb|ELH25389.1| protein tolB [Escherichia coli KTE190]
gi|431446552|gb|ELH27298.1| protein tolB [Escherichia coli KTE173]
gi|431448668|gb|ELH29383.1| protein tolB [Escherichia coli KTE175]
gi|431455995|gb|ELH36345.1| protein tolB [Escherichia coli KTE184]
gi|431462580|gb|ELH42791.1| protein tolB [Escherichia coli KTE196]
gi|431469898|gb|ELH49824.1| protein tolB [Escherichia coli KTE197]
gi|431474034|gb|ELH53857.1| protein tolB [Escherichia coli KTE203]
gi|431478341|gb|ELH58090.1| protein tolB [Escherichia coli KTE202]
gi|431482097|gb|ELH61803.1| protein tolB [Escherichia coli KTE209]
gi|431485995|gb|ELH65652.1| protein tolB [Escherichia coli KTE207]
gi|431494214|gb|ELH73804.1| protein tolB [Escherichia coli KTE211]
gi|431498035|gb|ELH77251.1| protein tolB [Escherichia coli KTE217]
gi|431506117|gb|ELH84721.1| protein tolB [Escherichia coli KTE215]
gi|431509401|gb|ELH87654.1| protein tolB [Escherichia coli KTE218]
gi|431513839|gb|ELH91919.1| protein tolB [Escherichia coli KTE223]
gi|431517533|gb|ELH95055.1| protein tolB [Escherichia coli KTE227]
gi|431519633|gb|ELH97085.1| protein tolB [Escherichia coli KTE229]
gi|431534817|gb|ELI11207.1| protein tolB [Escherichia coli KTE104]
gi|431536591|gb|ELI12760.1| protein tolB [Escherichia coli KTE105]
gi|431539910|gb|ELI15546.1| protein tolB [Escherichia coli KTE106]
gi|431545525|gb|ELI20177.1| protein tolB [Escherichia coli KTE109]
gi|431554892|gb|ELI28766.1| protein tolB [Escherichia coli KTE113]
gi|431558847|gb|ELI32431.1| protein tolB [Escherichia coli KTE112]
gi|431559596|gb|ELI33144.1| protein tolB [Escherichia coli KTE117]
gi|431573607|gb|ELI46404.1| protein tolB [Escherichia coli KTE124]
gi|431575251|gb|ELI47998.1| protein tolB [Escherichia coli KTE122]
gi|431587386|gb|ELI58763.1| protein tolB [Escherichia coli KTE125]
gi|431590110|gb|ELI61218.1| protein tolB [Escherichia coli KTE128]
gi|431592884|gb|ELI63453.1| protein tolB [Escherichia coli KTE129]
gi|431600559|gb|ELI70228.1| protein tolB [Escherichia coli KTE131]
gi|431605463|gb|ELI74852.1| protein tolB [Escherichia coli KTE133]
gi|431609388|gb|ELI78713.1| protein tolB [Escherichia coli KTE137]
gi|431613996|gb|ELI83162.1| protein tolB [Escherichia coli KTE138]
gi|431618900|gb|ELI87828.1| protein tolB [Escherichia coli KTE139]
gi|431622120|gb|ELI90904.1| protein tolB [Escherichia coli KTE145]
gi|431630955|gb|ELI99279.1| protein tolB [Escherichia coli KTE150]
gi|431634044|gb|ELJ02305.1| protein tolB [Escherichia coli KTE148]
gi|431636725|gb|ELJ04853.1| protein tolB [Escherichia coli KTE153]
gi|431648520|gb|ELJ15916.1| protein tolB [Escherichia coli KTE157]
gi|431649443|gb|ELJ16800.1| protein tolB [Escherichia coli KTE160]
gi|431651040|gb|ELJ18345.1| protein tolB [Escherichia coli KTE163]
gi|431662153|gb|ELJ28938.1| protein tolB [Escherichia coli KTE166]
gi|431664785|gb|ELJ31517.1| protein tolB [Escherichia coli KTE167]
gi|431665718|gb|ELJ32432.1| protein tolB [Escherichia coli KTE168]
gi|431676503|gb|ELJ42621.1| protein tolB [Escherichia coli KTE174]
gi|431678217|gb|ELJ44225.1| protein tolB [Escherichia coli KTE176]
gi|431681465|gb|ELJ47254.1| protein tolB [Escherichia coli KTE177]
gi|431691207|gb|ELJ56667.1| protein tolB [Escherichia coli KTE179]
gi|431693546|gb|ELJ58959.1| protein tolB [Escherichia coli KTE180]
gi|431695794|gb|ELJ61088.1| protein tolB [Escherichia coli KTE232]
gi|431709488|gb|ELJ73951.1| protein tolB [Escherichia coli KTE82]
gi|431711369|gb|ELJ75722.1| protein tolB [Escherichia coli KTE85]
gi|431720641|gb|ELJ84667.1| protein tolB [Escherichia coli KTE90]
gi|431725019|gb|ELJ88931.1| protein tolB [Escherichia coli KTE94]
gi|431725563|gb|ELJ89412.1| protein tolB [Escherichia coli KTE95]
gi|431732544|gb|ELJ95997.1| protein tolB [Escherichia coli KTE97]
gi|431735811|gb|ELJ99155.1| protein tolB [Escherichia coli KTE99]
gi|432348126|gb|ELL42578.1| translocation protein TolB [Escherichia coli J96]
gi|441712371|emb|CCQ07072.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli Nissle 1917]
gi|443421273|gb|AGC86177.1| translocation protein TolB [Escherichia coli APEC O78]
gi|444542016|gb|ELV21421.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0814]
gi|444547339|gb|ELV25960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0815]
gi|444550184|gb|ELV28311.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
09BKT078844]
gi|444564341|gb|ELV41286.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0839]
gi|444566599|gb|ELV43408.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0816]
gi|444570776|gb|ELV47292.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0848]
gi|444581469|gb|ELV57309.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1753]
gi|444584649|gb|ELV60271.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1775]
gi|444599206|gb|ELV74097.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 700728]
gi|444599644|gb|ELV74510.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA11]
gi|444607630|gb|ELV82201.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1805]
gi|444613989|gb|ELV88232.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA13]
gi|444614102|gb|ELV88342.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA19]
gi|444622577|gb|ELV96528.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA2]
gi|444623974|gb|ELV97883.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA48]
gi|444632023|gb|ELW05601.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA47]
gi|444636717|gb|ELW10107.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA8]
gi|444649575|gb|ELW22457.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1781]
gi|444653083|gb|ELW25818.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1762]
gi|444662115|gb|ELW34383.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA35]
gi|444666434|gb|ELW38505.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4880]
gi|444672341|gb|ELW44071.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0083]
gi|444674222|gb|ELW45786.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0670]
gi|449311275|gb|EMD01661.1| translocation protein TolB [Escherichia coli S17]
gi|449322184|gb|EMD12184.1| translocation protein TolB [Escherichia coli O08]
gi|449324485|gb|EMD14417.1| translocation protein TolB [Escherichia coli SEPT362]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|432645174|ref|ZP_19880974.1| protein tolB [Escherichia coli KTE86]
gi|432942735|ref|ZP_20139951.1| protein tolB [Escherichia coli KTE183]
gi|433187531|ref|ZP_20371649.1| protein tolB [Escherichia coli KTE88]
gi|431183952|gb|ELE83725.1| protein tolB [Escherichia coli KTE86]
gi|431453400|gb|ELH33809.1| protein tolB [Escherichia coli KTE183]
gi|431708800|gb|ELJ73305.1| protein tolB [Escherichia coli KTE88]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|429037095|ref|ZP_19102530.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0932]
gi|445022236|ref|ZP_21338154.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
7.1982]
gi|427305970|gb|EKW68531.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0932]
gi|444647088|gb|ELW20072.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
7.1982]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|428951415|ref|ZP_19023539.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1042]
gi|427214173|gb|EKV83523.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1042]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPVWSP 428
>gi|366158596|ref|ZP_09458458.1| translocation protein TolB [Escherichia sp. TW09308]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|415814935|ref|ZP_11506533.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
LT-68]
gi|323170861|gb|EFZ56511.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
LT-68]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|218553267|ref|YP_002386180.1| translocation protein TolB [Escherichia coli IAI1]
gi|226705879|sp|B7M6B0.1|TOLB_ECO8A RecName: Full=Protein TolB; Flags: Precursor
gi|218360035|emb|CAQ97582.1| periplasmic protein [Escherichia coli IAI1]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|402820447|ref|ZP_10870014.1| hypothetical protein IMCC14465_12480 [alpha proteobacterium
IMCC14465]
gi|402511190|gb|EJW21452.1| hypothetical protein IMCC14465_12480 [alpha proteobacterium
IMCC14465]
Length = 441
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 30/220 (13%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P FSP I ++ + +NR+ F T + + P F+ +
Sbjct: 213 PRFSPTAQEITYLSY----------ANRQPRVFLLNIETGQQEIVGDFPGMTFAPRFSPD 262
Query: 484 SSEVDIISI------NVDDVDGVSAV-RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ I+S+ N+ +D + V RRLT + P +PDG+ IVF S R G +
Sbjct: 263 GQKI-IMSLERNGNSNIYTLDLRTRVSRRLTNTLAIDTAPCYAPDGERIVFESDRAGRQQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+MDA+G + R++ G WSP G+ IAF G F + ++ P+G+
Sbjct: 322 LYVMDADGKN---VQRISYGEGRYATPVWSPRGDLIAFTKQL----KGRFLIGVMKPDGS 374
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
G R L + G N P +SP+G+ + F + G A P
Sbjct: 375 GERILTE----GYHNEGPAWSPNGRVLTFFREQKGEKAGP 410
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 505 RLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
RL T G++ A P SP + I + S +++++ E G+ + + P
Sbjct: 201 RLITTGQSLALTPRFSPTAQEITYLSYANRQPRVFLLNIETGQQ---EIVGDFPGMTFAP 257
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
+SPDG+ I + +R+ G+ +Y + R+L + + A P ++PDG+ IV
Sbjct: 258 RFSPDGQKIIMSLERN----GNSNIYTLDLRTRVSRRLTNTLAIDTA--PCYAPDGERIV 311
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
F SD G +++ + DG +++R++ TP W PR
Sbjct: 312 FESDRAGRQ--------------QLYVMDADGKNVQRISYGEGRYATPVWSPR 350
>gi|417128805|ref|ZP_11975592.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0246]
gi|386143761|gb|EIG90237.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0246]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSADGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|422834792|ref|ZP_16882852.1| tolB [Escherichia coli E101]
gi|371613976|gb|EHO02464.1| tolB [Escherichia coli E101]
Length = 430
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFNARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|226194238|ref|ZP_03789837.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei Pakistan 9]
gi|403519910|ref|YP_006654044.1| translocation protein TolB [Burkholderia pseudomallei BPC006]
gi|225933703|gb|EEH29691.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei Pakistan 9]
gi|403075553|gb|AFR17133.1| translocation protein TolB [Burkholderia pseudomallei BPC006]
Length = 421
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 84 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 143
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 144 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 195
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 196 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 248
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 249 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 304
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 305 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 351
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 352 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 388
>gi|422791521|ref|ZP_16844224.1| tol-Pal system beta propeller TolB [Escherichia coli TA007]
gi|323972027|gb|EGB67247.1| tol-Pal system beta propeller TolB [Escherichia coli TA007]
Length = 431
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGG 355
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|423107415|ref|ZP_17095110.1| protein tolB [Klebsiella oxytoca 10-5243]
gi|423113295|ref|ZP_17100986.1| protein tolB [Klebsiella oxytoca 10-5245]
gi|376388440|gb|EHT01135.1| protein tolB [Klebsiella oxytoca 10-5243]
gi|376388664|gb|EHT01357.1| protein tolB [Klebsiella oxytoca 10-5245]
Length = 430
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ S W P + Y + F S
Sbjct: 166 RIAYVVQKNGGQFPYELRVSDYDGYNQFLVHRSTQPLMSPAWSPDGAKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGSVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGAKLAY------VTFESGRSALVVQTLANGSVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|420367147|ref|ZP_14867951.1| tol-Pal system beta propeller repeat protein TolB, partial
[Shigella flexneri 1235-66]
gi|391323543|gb|EIQ80187.1| tol-Pal system beta propeller repeat protein TolB, partial
[Shigella flexneri 1235-66]
Length = 427
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG 354
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 27/213 (12%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
G+ L+ + D + +P+G + ++S +
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ 395
>gi|423101989|ref|ZP_17089691.1| protein tolB [Klebsiella oxytoca 10-5242]
gi|423128168|ref|ZP_17115847.1| protein tolB [Klebsiella oxytoca 10-5250]
gi|376390815|gb|EHT03498.1| protein tolB [Klebsiella oxytoca 10-5242]
gi|376395207|gb|EHT07857.1| protein tolB [Klebsiella oxytoca 10-5250]
Length = 430
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFLVHRSTQPLMSPAWSPDGAKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGSVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGAKLAY------VTFESGRSALVVQTLANGSVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|326388397|ref|ZP_08209993.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM
19370]
gi|326207129|gb|EGD57950.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM
19370]
Length = 478
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 40/258 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P +SP +I ++ + P +YV + ++R V F+ W P ++++Y+
Sbjct: 252 PRYSPDYSKILYLSYLDGRPRIYVYDIGSGSQRLVTEGKGPTFAPRWSPDGKSILYS--- 308
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + DI + RLT N S SPDG+ IVF S R+G + +
Sbjct: 309 ---MAIAGNTDIYRVPASG----GPSERLTNTPGINIGGSFSPDGRKIVFESDRSGSQQV 361
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+++G G HR++ WSP G+ IAF +G+ + ++ P+G
Sbjct: 362 YVMNSDGS---GQHRISFFGGRAATPEWSPRGDQIAFTHI-----AGNLRVAVMDPDGNN 413
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
LR L S + P ++P+G+ I F + + I+++ L G +
Sbjct: 414 LRYLTDS---WQDEAPTWAPNGRIIQFFRT------------EKNTGHTSIWQVDLTGRN 458
Query: 658 LKRLTQNSFEDGTPAWGP 675
+RL + + PAWGP
Sbjct: 459 ERRL-KTPVDASDPAWGP 475
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG+ A P SPD I++ S G +Y+ D G G
Sbjct: 229 LAIMDSDG--ANHRFITNGQATALTPRYSPDYSKILYLSYLDGRPRIYVYDI----GSGS 282
Query: 551 HRL-TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL TEG WSPDG+ I ++ +G+ ++Y + +G +L + + G
Sbjct: 283 QRLVTEGKGPTFAPRWSPDGKSILYSMAI----AGNTDIYRVPASGGPSERL--TNTPGI 336
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
FSPDG+ IVF SD G +++ + DGS R++
Sbjct: 337 NIGGSFSPDGRKIVFESDRSGSQ--------------QVYVMNSDGSGQHRISFFGGRAA 382
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 383 TPEWSPR 389
>gi|226228060|ref|YP_002762166.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27]
gi|226091251|dbj|BAH39696.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27]
Length = 338
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 110/274 (40%), Gaps = 57/274 (20%)
Query: 421 GSFPSFSPKGDRIAFV---------EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV 471
G PS S G R+ +V +F ++VV + RR + D A
Sbjct: 98 GGSPSVSADGQRVVYVGESNSTVDYDFQDLWVVMRGAAPRRLA--------LSDGSEHAP 149
Query: 472 VYTSGGPEFASESSEVDIIS-INVDDVDGV--SAVRRLTTNGKNNAF--PSVSPDGKWIV 526
+ G A ++S I V D++G S + G F P+ SPDG ++
Sbjct: 150 SMSPNGALIAYARPNAMMLSHIYVADIEGRAESPLSLAMAPGLQYTFATPAWSPDGTRLL 209
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F G +LY M +G + + ++T +SD WSPDG+ IAF
Sbjct: 210 FAGGAPGMLHLYTMRVDGTQ---VQQITNATYSDFDGTWSPDGQTIAF------------ 254
Query: 587 EMYLIHPNGTGL--RKLIQSGS-----AGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
+ I PN L R L+ A R+ HP +SPDG I F S+ +
Sbjct: 255 -VRYISPNHQILMTRNLVTGAERTFEYANRSRHPAWSPDGTRIAFVSNMSDNADL----- 308
Query: 640 HQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
E++ +K DGS L RLT ++ P+W
Sbjct: 309 -------ELYTVKPDGSALTRLTNDNLTQQHPSW 335
>gi|308271861|emb|CBX28469.1| Protein tolB [uncultured Desulfobacterium sp.]
Length = 450
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 132/322 (40%), Gaps = 69/322 (21%)
Query: 400 NQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDR------IAFVEFPG----VYVVNSDG 448
NQL+ + K + D+ + R S F G+R IAFV +Y+ + DG
Sbjct: 147 NQLVGKKYKGGVNDLRHILRLFASEIVFCLTGNRGVFDTRIAFVSTGSGKKEIYICDFDG 206
Query: 449 SNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFASESSEVDIIS------INV--- 494
+N RQ N+ + W + + YTS G P+ ++ + IS IN+
Sbjct: 207 TNVRQFTKNNSITLFPAWSSDGQWIAYTSYLKGNPDLYIKNVSNNSISVVSKKGINITPS 266
Query: 495 -----------------DDVDGVSA----VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
D+ ++ +++LT + ++ P+ SPDGK + F S+R+G
Sbjct: 267 WMPGKFELAATLSFSGDQDIYLMTGTGKIIKKLTNSTGSDVSPTFSPDGKKMAFVSSRSG 326
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+YI D G RLT +T WSP G I ++ G +++I
Sbjct: 327 TPQIYIQDISTGNE---QRLTFNGRYNTQPCWSPKGNKIVYSG----LDGGKHNIFIIAL 379
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+G +L + G P++SPDG IVF+S G S + T +
Sbjct: 380 DGKDPVQLTH--NEGDNESPFWSPDGSLIVFSSTREGPSRIYVMTSY------------- 424
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G+D KRL S E P W P
Sbjct: 425 -GTDQKRLFSISGEQSNPKWSP 445
>gi|288922582|ref|ZP_06416761.1| serine/threonine protein kinase with PASTA sensor(s) [Frankia sp.
EUN1f]
gi|288346056|gb|EFC80406.1| serine/threonine protein kinase with PASTA sensor(s) [Frankia sp.
EUN1f]
Length = 497
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 374 NPFISPDSSRVGYHKCRG--GSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
NP +SPD+SRV Y G S R DG + + + + D P+FSP G
Sbjct: 275 NPVLSPDASRVAYTNADGEITSVRTDGTDSRQVSDEPNGSSD---------SPAFSPDGG 325
Query: 432 RIAFVE-FPGVYVVNSDGSN--RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
IA+ GVY VN+DGS RR +A+ W + V+ +
Sbjct: 326 TIAYARNIGGVYAVNADGSGNRRRLATVSDAYELAWSTSNQIVLR---------RGDDQS 376
Query: 489 IISINVDDVDGVSAVRRLTTN---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I ++VDD + +RRL + G P+ SPDG + F + G +Y+++A
Sbjct: 377 IYVLSVDDGN----LRRLAGSPVPGAGAVEPAWSPDGGAVAFGVSTGG--GIYLVNA--- 427
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF----EMYLIHPNGTGLRKL 601
+G GL R GP S +WSP G + +D + F M +++P+GTG R+L
Sbjct: 428 DGSGL-RQAAGPGS-WHPSWSPQGALVYV---QDGSAARFFGANGTMRMMNPDGTGNRQL 482
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 31/211 (14%)
Query: 421 GSFPSFSPKGDRIAFVEFPG-VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
G P SP R+A+ G + V +DG++ RQV + S+ ++ ++ G
Sbjct: 273 GDNPVLSPDASRVAYTNADGEITSVRTDGTDSRQVSDEPNGSS------DSPAFSPDGGT 326
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A + + ++N D G RRL T ++A+ IV R R +++Y+
Sbjct: 327 IAYARNIGGVYAVNAD---GSGNRRRLAT--VSDAYELAWSTSNQIVLR--RGDDQSIYV 379
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+ + G L RL P WSPDG +AF + G G +YL++ +G+
Sbjct: 380 LSVDDGN---LRRLAGSPVPGAGAVEPAWSPDGGAVAFGV---STGGG---IYLVNADGS 430
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
GLR+ GS HP +SP G ++V+ D
Sbjct: 431 GLRQAAGPGSW----HPSWSPQG-ALVYVQD 456
>gi|26246709|ref|NP_752749.1| translocation protein TolB [Escherichia coli CFT073]
gi|91209774|ref|YP_539760.1| translocation protein TolB [Escherichia coli UTI89]
gi|117622931|ref|YP_851844.1| translocation protein TolB [Escherichia coli APEC O1]
gi|170683440|ref|YP_001742851.1| translocation protein TolB [Escherichia coli SMS-3-5]
gi|209917991|ref|YP_002292075.1| translocation protein TolB [Escherichia coli SE11]
gi|227884293|ref|ZP_04002098.1| TolB protein [Escherichia coli 83972]
gi|237707297|ref|ZP_04537778.1| translocation protein TolB [Escherichia sp. 3_2_53FAA]
gi|261224451|ref|ZP_05938732.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK2000]
gi|261254557|ref|ZP_05947090.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK966]
gi|300816390|ref|ZP_07096612.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 107-1]
gi|300822971|ref|ZP_07103106.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 119-7]
gi|300900747|ref|ZP_07118896.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 198-1]
gi|300906999|ref|ZP_07124668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 84-1]
gi|300918401|ref|ZP_07135001.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 115-1]
gi|300926144|ref|ZP_07141957.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 182-1]
gi|300929454|ref|ZP_07144922.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 187-1]
gi|300937787|ref|ZP_07152584.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 21-1]
gi|300947179|ref|ZP_07161389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 116-1]
gi|300957689|ref|ZP_07169878.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 175-1]
gi|300992345|ref|ZP_07179868.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 200-1]
gi|300993166|ref|ZP_07180249.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 45-1]
gi|301020788|ref|ZP_07184852.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 69-1]
gi|301027078|ref|ZP_07190450.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 196-1]
gi|301051340|ref|ZP_07198163.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 185-1]
gi|301305228|ref|ZP_07211326.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 124-1]
gi|301327933|ref|ZP_07221104.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 78-1]
gi|301648045|ref|ZP_07247812.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 146-1]
gi|309797455|ref|ZP_07691847.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 145-7]
gi|331656759|ref|ZP_08357721.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA206]
gi|332282411|ref|ZP_08394824.1| translocation protein TolB [Shigella sp. D9]
gi|386628281|ref|YP_006148001.1| translocation protein TolB [Escherichia coli str. 'clone D i2']
gi|386633201|ref|YP_006152920.1| translocation protein TolB [Escherichia coli str. 'clone D i14']
gi|415860629|ref|ZP_11534344.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 85-1]
gi|415875882|ref|ZP_11542502.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 79-10]
gi|417133447|ref|ZP_11978232.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0588]
gi|417141089|ref|ZP_11984081.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0259]
gi|417144242|ref|ZP_11986048.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2264]
gi|417219207|ref|ZP_12024049.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
JB1-95]
gi|417242607|ref|ZP_12037824.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
9.0111]
gi|417263903|ref|ZP_12051299.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.3916]
gi|417311446|ref|ZP_12098181.1| Protein tolB [Escherichia coli PCN033]
gi|417863968|ref|ZP_12509015.1| hypothetical protein C22711_0901 [Escherichia coli O104:H4 str.
C227-11]
gi|418042821|ref|ZP_12681006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W26]
gi|418958967|ref|ZP_13510873.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
J53]
gi|419805426|ref|ZP_14330563.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AI27]
gi|421777648|ref|ZP_16214241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AD30]
gi|422351579|ref|ZP_16432391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 117-3]
gi|422359019|ref|ZP_16439668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 110-3]
gi|422364649|ref|ZP_16445160.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 153-1]
gi|422368984|ref|ZP_16449388.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 16-3]
gi|422378346|ref|ZP_16458569.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 60-1]
gi|422379167|ref|ZP_16459370.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 57-2]
gi|422765269|ref|ZP_16818996.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520]
gi|422775438|ref|ZP_16829094.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120]
gi|422785337|ref|ZP_16838076.1| tol-Pal system beta propeller TolB [Escherichia coli H489]
gi|442592331|ref|ZP_21010309.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
gi|26107108|gb|AAN79292.1|AE016757_196 TolB protein precursor [Escherichia coli CFT073]
gi|148020|gb|AAA24684.1| tolB [Escherichia coli]
gi|91071348|gb|ABE06229.1| periplasmic protein involved in the tonB-independent uptake of
group A colicins [Escherichia coli UTI89]
gi|115512055|gb|ABJ00130.1| TolB protein precursor [Escherichia coli APEC O1]
gi|170521158|gb|ACB19336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
SMS-3-5]
gi|209911250|dbj|BAG76324.1| TolB protein [Escherichia coli SE11]
gi|226898507|gb|EEH84766.1| translocation protein TolB [Escherichia sp. 3_2_53FAA]
gi|227839045|gb|EEJ49511.1| TolB protein [Escherichia coli 83972]
gi|299879412|gb|EFI87623.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 196-1]
gi|300297002|gb|EFJ53387.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 185-1]
gi|300305362|gb|EFJ59882.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 200-1]
gi|300315607|gb|EFJ65391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 175-1]
gi|300355806|gb|EFJ71676.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 198-1]
gi|300398434|gb|EFJ81972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 69-1]
gi|300401220|gb|EFJ84758.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 84-1]
gi|300406696|gb|EFJ90234.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 45-1]
gi|300414464|gb|EFJ97774.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 115-1]
gi|300417843|gb|EFK01154.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 182-1]
gi|300453165|gb|EFK16785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 116-1]
gi|300457198|gb|EFK20691.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 21-1]
gi|300462563|gb|EFK26056.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 187-1]
gi|300524512|gb|EFK45581.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 119-7]
gi|300531080|gb|EFK52142.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 107-1]
gi|300839540|gb|EFK67300.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 124-1]
gi|300845576|gb|EFK73336.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 78-1]
gi|301073871|gb|EFK88677.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 146-1]
gi|308118979|gb|EFO56241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 145-7]
gi|315257659|gb|EFU37627.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 85-1]
gi|315287145|gb|EFU46557.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 110-3]
gi|315292654|gb|EFU52006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 153-1]
gi|315299257|gb|EFU58509.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 16-3]
gi|323938279|gb|EGB34537.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520]
gi|323946994|gb|EGB43008.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120]
gi|323963121|gb|EGB58691.1| tol-Pal system beta propeller TolB [Escherichia coli H489]
gi|324009566|gb|EGB78785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 57-2]
gi|324010463|gb|EGB79682.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 60-1]
gi|324020352|gb|EGB89571.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 117-3]
gi|331055007|gb|EGI27016.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA206]
gi|332104763|gb|EGJ08109.1| translocation protein TolB [Shigella sp. D9]
gi|338766987|gb|EGP21872.1| Protein tolB [Escherichia coli PCN033]
gi|341917257|gb|EGT66873.1| hypothetical protein C22711_0901 [Escherichia coli O104:H4 str.
C227-11]
gi|342929022|gb|EGU97744.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 79-10]
gi|355419180|gb|AER83377.1| translocation protein TolB [Escherichia coli str. 'clone D i2']
gi|355424100|gb|AER88296.1| translocation protein TolB [Escherichia coli str. 'clone D i14']
gi|383474261|gb|EID66255.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W26]
gi|384378223|gb|EIE36108.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
J53]
gi|384471606|gb|EIE55680.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AI27]
gi|386151301|gb|EIH02590.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0588]
gi|386156024|gb|EIH12373.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0259]
gi|386164125|gb|EIH25911.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2264]
gi|386192969|gb|EIH87277.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
JB1-95]
gi|386211595|gb|EII22051.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
9.0111]
gi|386222460|gb|EII44887.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.3916]
gi|408457274|gb|EKJ81072.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AD30]
gi|441607990|emb|CCP95756.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
Length = 431
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNGG 355
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|268590336|ref|ZP_06124557.1| Tol-Pal system beta propeller repeat protein TolB [Providencia
rettgeri DSM 1131]
gi|291314245|gb|EFE54698.1| Tol-Pal system beta propeller repeat protein TolB [Providencia
rettgeri DSM 1131]
Length = 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA++ ++P + V + DG N+ V+ + S W P E + Y + F S
Sbjct: 166 RIAYIVVNKGGQYPYELRVSDYDGFNQFTVHRSPEPLMSPAWSPDGEKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GSSALVIQTLST------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y ++ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKMNINGGSPERVS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + SPDG +V S GG Q+ + K L ++++ LT
Sbjct: 329 WEGTQNQDAD--VSPDGTFLVMVSSGGG---------QQH-----VAKQDLATNNVEFLT 372
Query: 663 QNSFEDGTPAWGP 675
+ +F D TP+ P
Sbjct: 373 K-TFLDETPSIAP 384
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD ++ Y T E G++ L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGEKLAY------VTFESGSSALVIQTLSTGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
I +N++ + R++ G N VSPDG ++V S+ G +++ D
Sbjct: 311 RPQIYKMNING----GSPERVSWEGTQNQDADVSPDGTFLVMVSSGGGQQHVAKQD 362
>gi|254180824|ref|ZP_04887422.1| putative TolB protein [Burkholderia pseudomallei 1655]
gi|184211363|gb|EDU08406.1| putative TolB protein [Burkholderia pseudomallei 1655]
Length = 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 93 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 152
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 153 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 204
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 205 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 257
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 258 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 313
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 314 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 360
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 361 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 397
>gi|126440889|ref|YP_001060215.1| translocation protein TolB [Burkholderia pseudomallei 668]
gi|126451941|ref|YP_001067479.1| translocation protein TolB [Burkholderia pseudomallei 1106a]
gi|134280578|ref|ZP_01767289.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 305]
gi|217420955|ref|ZP_03452460.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 576]
gi|237813605|ref|YP_002898056.1| translocation protein TolB [Burkholderia pseudomallei MSHR346]
gi|254191662|ref|ZP_04898165.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237]
gi|254258828|ref|ZP_04949882.1| putative TolB protein [Burkholderia pseudomallei 1710a]
gi|254299065|ref|ZP_04966515.1| putative TolB protein [Burkholderia pseudomallei 406e]
gi|126220382|gb|ABN83888.1| putative TolB protein [Burkholderia pseudomallei 668]
gi|126225583|gb|ABN89123.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 1106a]
gi|134248585|gb|EBA48668.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 305]
gi|157809130|gb|EDO86300.1| putative TolB protein [Burkholderia pseudomallei 406e]
gi|157939333|gb|EDO95003.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237]
gi|217396367|gb|EEC36384.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 576]
gi|237506221|gb|ACQ98539.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei MSHR346]
gi|254217517|gb|EET06901.1| putative TolB protein [Burkholderia pseudomallei 1710a]
Length = 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 93 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 152
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 153 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 204
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 205 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 257
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 258 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 313
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 314 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 360
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 361 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 397
>gi|85374728|ref|YP_458790.1| translocation protein TolB [Erythrobacter litoralis HTCC2594]
gi|84787811|gb|ABC63993.1| Tol biopolymer transport system [Erythrobacter litoralis HTCC2594]
Length = 471
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P +SP R+ ++ + P +Y+ + G+ R+Q+ ++ F+ W P ++Y+
Sbjct: 245 PRYSPDYRRLLYLSYVDGNPRIYIYDI-GTGRQQLVTESTNPTFAPRWSPDGRWILYS-- 301
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + DI ++ + V RLTT + S SPDG IVF S R+G +
Sbjct: 302 ----MAVNGNTDIYRVSAEGGPSV----RLTTEPGIDVGGSYSPDGSQIVFESDRSGSQQ 353
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+YIM+++G R++ WSP G+ IAF G F + ++ PNG
Sbjct: 354 VYIMNSDGTN---QRRISFFGGRAATPEWSPRGDQIAFTYI-----PGDFNIAVMSPNGR 405
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
RKL + + P ++P+G+ I F T G +A ++++ L
Sbjct: 406 NFRKL---SNGWQDEAPTWAPNGRIIQFFRTERNTGRTA--------------LYQVDLT 448
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +L+RL + PAWGP
Sbjct: 449 GDNLRRL-NTPVDASDPAWGP 468
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 26/199 (13%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLY 538
+ +E+ D + + +D A R T G+ A P SPD + +++ S G +Y
Sbjct: 208 YIAETGPKDNRTKRLAIMDSDGANHRFITTGRATALTPRYSPDYRRLLYLSYVDGNPRIY 267
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
I D G G +L + T WSPDG WI ++ + G+ ++Y + G
Sbjct: 268 IYDI----GTGRQQLVTESTNPTFAPRWSPDGRWILYSMAVN----GNTDIYRVSAEGGP 319
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L G +SPDG IVF SD G +++ + DG++
Sbjct: 320 SVRLTTE--PGIDVGGSYSPDGSQIVFESDRSGSQ--------------QVYIMNSDGTN 363
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 364 QRRISFFGGRAATPEWSPR 382
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD S++ + R GS + DG NQ IS F + P +SP+GD+
Sbjct: 336 SPDGSQIVFESDRSGSQQVYIMNSDGTNQRR----------ISFFGGRAATPEWSPRGDQ 385
Query: 433 IAFVEFPG---VYVVNSDGSNRRQV 454
IAF PG + V++ +G N R++
Sbjct: 386 IAFTYIPGDFNIAVMSPNGRNFRKL 410
>gi|429092411|ref|ZP_19155047.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
dublinensis 1210]
gi|426742891|emb|CCJ81160.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
dublinensis 1210]
Length = 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNVNGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S GG I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGGAQ--------------NIAKLDLVTGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|408784867|ref|ZP_11196617.1| translocation protein TolB [Rhizobium lupini HPC(L)]
gi|408489206|gb|EKJ97510.1| translocation protein TolB [Rhizobium lupini HPC(L)]
Length = 437
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 210 PRFSPSRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 266
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 267 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSYSPDGQRVAFESDRGGRQQI 319
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 320 YVMNADGS---GQQRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 372
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 373 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 416
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 417 NEQLIKTPTFAS-DPAWSP 434
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP + + + S
Sbjct: 171 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPSRQEVTYMS 223
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 224 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 276
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P +SPDG+ + F SD GG +I+
Sbjct: 277 TMDLRSRTTTRLTNTSAIDTA--PSYSPDGQRVAFESDRGGRQ--------------QIY 320
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 321 VMNADGSGQQRI---SFGDGSYSTPVWSPR 347
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 248 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSY 300
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSF--PSFSPKGDRIA 434
SPD RV + RG G Q+ + N S IS DGS+ P +SP+GD IA
Sbjct: 301 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRISF--GDGSYSTPVWSPRGDLIA 352
Query: 435 FVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
F + G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 353 FTKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 410
>gi|260912913|ref|ZP_05919398.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella
dagmatis ATCC 43325]
gi|260632903|gb|EEX51069.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella
dagmatis ATCC 43325]
Length = 432
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 36/205 (17%)
Query: 501 SAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
S R++ + K +N P+ SPDG + F S++ G N+Y+M+ G+ + +LT G +
Sbjct: 238 SGARKVVASFKGHNGAPAFSPDGSRLAFASSQDGVLNIYVMNLGSGQ---IAQLTRGAGN 294
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
+T +WSPDG+ I F SDR SGS ++Y + G G L+ +G GR+ + DG
Sbjct: 295 NTEPSWSPDGQTIVFTSDR----SGSPQVYQMSATGGG-ASLVSAG--GRSYSGQITADG 347
Query: 620 KSIVFTSDYGGISAEPISTPHQY------------------------QPYGEIFK-IKLD 654
+++ S I + +S + Q G++ + + D
Sbjct: 348 STLIMISGDNIIKKDLVSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 407
Query: 655 GSDLKRLTQNSFEDGTPAWGPRFIR 679
G RL N + PAW P +
Sbjct: 408 GRFKARLPGNDGQVKFPAWSPYLTK 432
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFS 427
K H+ P SPD SR+ + ++ +DG + + N+ S + ++ + + PS+S
Sbjct: 248 KGHNGAPAFSPDGSRLAF------ASSQDGVLNIYVMNLGSGQIAQLTRGAGNNTEPSWS 301
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE---- 483
P G I F SD S QVY +A A + ++GG ++ +
Sbjct: 302 PDGQTIVF---------TSDRSGSPQVYQMSATGG------GASLVSAGGRSYSGQITAD 346
Query: 484 -SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S+ + I N+ D VS + ++ + PS+SP+G I++ ST+ K L ++ A
Sbjct: 347 GSTLIMISGDNIIKKDLVSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSA 406
Query: 543 EG 544
+G
Sbjct: 407 DG 408
>gi|148261881|ref|YP_001236008.1| TolB domain-containing protein [Acidiphilium cryptum JF-5]
gi|146403562|gb|ABQ32089.1| TolB, N-terminal domain protein [Acidiphilium cryptum JF-5]
Length = 469
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 52/290 (17%)
Query: 409 SPLPDISLFRFDGS-------------FPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
SP+ ++L +DG+ P F+P ++AFV F P VY+ + R
Sbjct: 210 SPIRRMALMDYDGANVRFLTSGRNMALSPQFNPTRQQLAFVSFENNRPQVYLFDLQTGAR 269
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
+ + +F + P A++++ S+ I+ ++ G + +LT
Sbjct: 270 TNIGSFGDMSFGPRFSPDGSALLFS------ISKGGGAMIVKYDL----GSRRMTQLTDA 319
Query: 510 GKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
N P SPDG IVF S R +G + L++M+A+G + R++ G +WSP
Sbjct: 320 NSINVTPCYSPDGTKIVFNSDRDGSGDQQLFVMNADGSN---VQRISYGHARYAEPDWSP 376
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
G+ IAF + D+ G F + ++ P+G+G R L Q A F P+G+ I+F
Sbjct: 377 RGDAIAF-TRLDSSG---FGIGVMKPDGSGERLLSQGYLEEGAT---FCPNGRVIMFYRQ 429
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
+P + + I +DG + +R+T P+WGPR
Sbjct: 430 ----------SPLRVGNVSHLVTIGVDGFN-ERITPTPTNAEDPSWGPRL 468
>gi|383934525|ref|ZP_09987966.1| peptidase S41 [Rheinheimera nanhaiensis E407-8]
gi|383704497|dbj|GAB58057.1| peptidase S41 [Rheinheimera nanhaiensis E407-8]
Length = 1085
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
R+LT++ + P SPDG WI F ++ ++YIM GG RLT P DT+
Sbjct: 56 RQLTSHPASEFAPKFSPDGNWIAFSASYDNNTDVYIMPVSGGTP---TRLTYHPGVDTVN 112
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSPDG+ + FAS+R+ S S ++Y I + KL+Q+ + H PDGK +
Sbjct: 113 GWSPDGKRVLFASNREIANSRSNQLYQISIDSGYPEKLMQAVAFEGDLH----PDGKKLA 168
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + S H+ ++ I L+ L+++ + + P W
Sbjct: 169 YRPNNMAYSGASGWRLHRGGSTPPVWIIDLEKQQLEKIPHPNANEFNPFW 218
Score = 38.9 bits (89), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G +LT P S+ +SPDG WIAF++ DN + ++Y++ +G +L
Sbjct: 52 GQNPRQLTSHPASEFAPKFSPDGNWIAFSASYDN----NTDVYIMPVSGGTPTRLTYHPG 107
Query: 607 AGRANHPYFSPDGKSIVFTSD 627
N +SPDGK ++F S+
Sbjct: 108 VDTVNG--WSPDGKRVLFASN 126
>gi|326405385|ref|YP_004285467.1| protein TolB [Acidiphilium multivorum AIU301]
gi|338983981|ref|ZP_08633111.1| TolB domain-containing protein [Acidiphilium sp. PM]
gi|325052247|dbj|BAJ82585.1| protein TolB [Acidiphilium multivorum AIU301]
gi|338207090|gb|EGO95097.1| TolB domain-containing protein [Acidiphilium sp. PM]
Length = 469
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 52/290 (17%)
Query: 409 SPLPDISLFRFDGS-------------FPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
SP+ ++L +DG+ P F+P ++AFV F P VY+ + R
Sbjct: 210 SPIRRMALMDYDGANVRFLTSGRNMALSPQFNPTRQQLAFVSFENNRPQVYLFDLQTGAR 269
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
+ + +F + P A++++ S+ I+ ++ G + +LT
Sbjct: 270 TNIGSFGDMSFGPRFSPDGSALLFS------ISKGGGAMIVKYDL----GSRRMTQLTDA 319
Query: 510 GKNNAFPSVSPDGKWIVFRSTR--TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
N P SPDG IVF S R +G + L++M+A+G + R++ G +WSP
Sbjct: 320 NSINVTPCYSPDGTKIVFNSDRDGSGDQQLFVMNADGSN---VQRISYGHARYAEPDWSP 376
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
G+ IAF + D+ G F + ++ P+G+G R L Q A F P+G+ I+F
Sbjct: 377 RGDAIAF-TRLDSSG---FGIGVMKPDGSGERLLSQGYLEEGAT---FCPNGRVIMFYRQ 429
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
+P + + I +DG + +R+T P+WGPR
Sbjct: 430 ----------SPLRVGNVSHLVTIGVDGFN-ERITPTPTNAEDPSWGPRL 468
>gi|344343828|ref|ZP_08774694.1| Protein tolB [Marichromatium purpuratum 984]
gi|343804439|gb|EGV22339.1| Protein tolB [Marichromatium purpuratum 984]
Length = 433
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 38/257 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P++SP G RIA+V F P +YV R +V + + + ++ G
Sbjct: 207 PAWSPDGRRIAYVSFESRRPAIYVQELASGRRERV-------ASYPGINSSPAFSPDGRR 259
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A S+ I V D+D A+ RLT + + P+ SPDG +VF S R G +Y
Sbjct: 260 LAMTLSKDGNPEIYVLDLDS-RALTRLTNHFAIDTEPAWSPDGSHLVFTSGRGGNPQIYR 318
Query: 540 MDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+ A GG + R++ EG ++ + ++PDG IA A R N G+F + L+ G
Sbjct: 319 VPASGG---AVSRVSFEGDYNASPV-YAPDGRSIAMAR-RIN---GAFRIALLDVE-RGF 369
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L+ G + P F+P+ +++ + +GG + + +DG
Sbjct: 370 SRLLSRGPLDES--PSFAPNSSMVIYATTHGGRAV--------------LAAAAVDGGAN 413
Query: 659 KRLTQNSFEDGTPAWGP 675
+RLTQ + + PAW P
Sbjct: 414 QRLTQGTDQVREPAWSP 430
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 44/271 (16%)
Query: 148 STRVQVPLLDLNEVNGGVISMKDKPILS------GEYLIYVSTHENPGTPRTSWAAVYST 201
+ RV + + D + N VI +PI+S G + YVS + A+Y
Sbjct: 179 NARVTLQVADADGYNPQVIVSSTEPIMSPAWSPDGRRIAYVSFE-------SRRPAIYVQ 231
Query: 202 ELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQ 261
EL +G R+ Y + SPA SP G+ A+ +K + E+ +L D +R T+
Sbjct: 232 ELASGRRERVASYPGINSSPAFSPDGRRLAMTL--SKDGNPEIYVLDLD-----SRALTR 284
Query: 262 RVKIVENGGWPCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL 320
P W D S L F + PQ V ++ RV+ G
Sbjct: 285 LTNHFAIDTEPAWSPDGSHLVFTSGRGGN----------PQIYRVPASGGAVSRVSFEGD 334
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
+ +P +P + + IA+A RR ++R I L D+ + +R +S +P +P+
Sbjct: 335 YNASPVYAP-DGRSIAMA-RRINGAFR-IALLDVERG----FSRLLSRGPLDESPSFAPN 387
Query: 381 SSRVGYHKCRGG------STREDGNNQLLLE 405
SS V Y GG + + G NQ L +
Sbjct: 388 SSMVIYATTHGGRAVLAAAAVDGGANQRLTQ 418
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 33/222 (14%)
Query: 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSF 423
VS ++P SPD R+ Y E + ++ + S + ++ + S
Sbjct: 197 IVSSTEPIMSPAWSPDGRRIAYVSF------ESRRPAIYVQELASGRRERVASYPGINSS 250
Query: 424 PSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS 475
P+FSP G R+A P +YV++ D +R N F+ W P +V+TS
Sbjct: 251 PAFSPDGRRLAMTLSKDGNPEIYVLDLD--SRALTRLTNHFAIDTEPAWSPDGSHLVFTS 308
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I + AV R++ G NA P +PDG+ I G
Sbjct: 309 G------RGGNPQIYRVPASG----GAVSRVSFEGDYNASPVYAPDGRSIAMARRINGAF 358
Query: 536 NLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWSPDGEWIAFAS 576
+ ++D E G R L+ GP D +++P+ + +A+
Sbjct: 359 RIALLDVE----RGFSRLLSRGPL-DESPSFAPNSSMVIYAT 395
>gi|254454187|ref|ZP_05067624.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter
arcticus 238]
gi|198268593|gb|EDY92863.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter
arcticus 238]
Length = 441
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
P FSP GDRI + FP + +++ R+Q+ + AFS + V+Y+
Sbjct: 212 PRFSPSGDRILYTSYESGFPRINILDVATVVRQQMTTAAGEMAFSPRFSRDGRQVIYS-- 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI ++ RLT PS SPDG IVF S R+G +
Sbjct: 270 ----LANGGNTDIYRTDL----ATGQNTRLTNTPAIETSPSFSPDGSQIVFESDRSGTQQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE + G + + WSP G+ IAF SG F + ++ +GT
Sbjct: 322 LYVMSANGGEPQRIS-FENGRYGTPV--WSPRGDLIAFTKQE----SGRFHIGVMRTDGT 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S+ P ++P+G+ I+F + G ++ + + G
Sbjct: 375 EERLLT---SSFLDEGPTWAPNGRVIMFARETQGSDGTT-----------GLYSVDITGR 420
Query: 657 DLKRLTQNSFEDGT-PAWG 674
+L+R+T + + G+ P+WG
Sbjct: 421 NLRRVT--TPQGGSDPSWG 437
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 36/248 (14%)
Query: 428 PKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
PK DR + +++ DG+N + Y ++ + V P ++ G S E
Sbjct: 181 PKDDRAKRLA-----IMDYDGANVQ--YLTDSSAIVLAPR-----FSPSGDRILYTSYES 228
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
IN+ DV V + T G+ P S DG+ +++ G ++Y D G+
Sbjct: 229 GFPRINILDVATVVRQQMTTAAGEMAFSPRFSRDGRQVIYSLANGGNTDIYRTDLATGQN 288
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
RLT P +T ++SPDG I F SDR SG+ ++Y++ NG +++ S
Sbjct: 289 ---TRLTNTPAIETSPSFSPDGSQIVFESDR----SGTQQLYVMSANGGEPQRI--SFEN 339
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
GR P +SP G I FT G I ++ DG++ +RL +SF
Sbjct: 340 GRYGTPVWSPRGDLIAFTKQESG--------------RFHIGVMRTDGTE-ERLLTSSFL 384
Query: 668 DGTPAWGP 675
D P W P
Sbjct: 385 DEGPTWAP 392
>gi|154252569|ref|YP_001413393.1| beta-propeller repeat-containing to-pal system protein TolB
[Parvibaculum lavamentivorans DS-1]
gi|189035985|sp|A7HV03.1|TOLB_PARL1 RecName: Full=Protein TolB; Flags: Precursor
gi|154156519|gb|ABS63736.1| Tol-Pal system beta propeller repeat TolB [Parvibaculum
lavamentivorans DS-1]
Length = 446
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 40/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VYV++ + + V + F+ + P + ++ +
Sbjct: 218 PRFSPNSQEITYLAYRNNQPRVYVLDIETGQQEVVGEFPGMTFAPRFSPDGQRIIMS--- 274
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
DI ++++ V RLT + PS SPDG+ I F S R G + +
Sbjct: 275 ---LQRGGNSDIYTMDLRS----RQVVRLTNTAAIDTAPSYSPDGRQITFESDRGGSQQI 327
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+MDA G R++ G S WSP G+ IAF G F + ++ P+GTG
Sbjct: 328 YVMDASGSN---QRRISFGQGSYATPVWSPRGDLIAFT----KITGGRFVIGVMRPDGTG 380
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F + G P ++ + + G
Sbjct: 381 ERVL----TDGFHNEGPTWAPNGRVLMFFRETRGAQGGP-----------SLWSVDVTGY 425
Query: 657 DLKRLTQNSFEDGTPAWGPRF 677
+ + +F PAW PR
Sbjct: 426 NERPSPTPTFAS-DPAWSPRI 445
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
+VY S GP+ A + + + D DG + R LT + P SP+ + I + +
Sbjct: 179 IVYVSETGPKNAR------VKRLTIMDQDGHNP-RMLTRGNELVLTPRFSPNSQEITYLA 231
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
R +Y++D E G+ + E P +SPDG+ I + R G+ ++Y
Sbjct: 232 YRNNQPRVYVLDIETGQ---QEVVGEFPGMTFAPRFSPDGQRIIMSLQR----GGNSDIY 284
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ + +L + + A P +SPDG+ I F SD GG +I+
Sbjct: 285 TMDLRSRQVVRLTNTAAIDTA--PSYSPDGRQITFESDRGGSQ--------------QIY 328
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ GS+ +R++ TP W PR
Sbjct: 329 VMDASGSNQRRISFGQGSYATPVWSPR 355
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 29/188 (15%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP + I R S I DL + + LT + T P
Sbjct: 256 PGM-TFAPRFSPDGQRIIMSLQRGGNSD---IYTMDLRSRQVVRLTNTAAIDTA---PSY 308
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
SPD ++ + RGGS +++ S IS + + P +SP+GD IAF +
Sbjct: 309 SPDGRQITFESDRGGS-----QQIYVMDASGSNQRRISFGQGSYATPVWSPRGDLIAFTK 363
Query: 438 FPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY------TSGGPEFASESS 485
G + V+ DG+ R + F N T W P +++ GGP S
Sbjct: 364 ITGGRFVIGVMRPDGTGERVLTDGFHNEGPT-WAPNGRVLMFFRETRGAQGGPSLWS--- 419
Query: 486 EVDIISIN 493
VD+ N
Sbjct: 420 -VDVTGYN 426
>gi|417266847|ref|ZP_12054208.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.3884]
gi|386229205|gb|EII56560.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.3884]
Length = 430
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQLLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 352 FDLVKNKFIELTRFVSPKTHHL--NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
++L + + +FV ++ L +P SPD S++ Y T E G + L+++ + +
Sbjct: 180 YELRVSDYDGYNQFVVHRSPQLLMSPAWSPDGSKLAY------VTFESGRSALVIQTLAN 233
Query: 410 -PLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST-- 462
+ ++ F P+FSP G ++AF +YV++ RQV + +T
Sbjct: 234 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP 293
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P + + +TS ++ + +N++ A +R+T G N VS DG
Sbjct: 294 TWFPDSQNLAFTS------DQAGRPQVYKVNING----GAPQRITWEGSQNQDADVSSDG 343
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
K++V S+ G +++ D G G+ L+ + D + +P+G + ++S + G
Sbjct: 344 KFMVMVSSNGGQQHIAKQDLATG---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---G 396
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
GS + L+ +G +L + G+ P +SP
Sbjct: 397 MGSV-LNLVSTDGRFKARL--PATDGQVKFPAWSP 428
>gi|386860662|ref|YP_006273611.1| translocation protein TolB [Burkholderia pseudomallei 1026b]
gi|418378049|ref|ZP_12966053.1| translocation protein TolB [Burkholderia pseudomallei 354a]
gi|418539125|ref|ZP_13104726.1| translocation protein TolB [Burkholderia pseudomallei 1026a]
gi|418552604|ref|ZP_13117461.1| translocation protein TolB [Burkholderia pseudomallei 354e]
gi|385346806|gb|EIF53481.1| translocation protein TolB [Burkholderia pseudomallei 1026a]
gi|385372822|gb|EIF77909.1| translocation protein TolB [Burkholderia pseudomallei 354e]
gi|385377749|gb|EIF82300.1| translocation protein TolB [Burkholderia pseudomallei 354a]
gi|385657790|gb|AFI65213.1| translocation protein TolB [Burkholderia pseudomallei 1026b]
Length = 443
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 106 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 165
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 166 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 217
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 218 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 270
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 271 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 326
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 327 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 373
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 374 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 410
>gi|418298598|ref|ZP_12910436.1| translocation protein TolB [Agrobacterium tumefaciens CCNWGS0286]
gi|355536511|gb|EHH05784.1| translocation protein TolB [Agrobacterium tumefaciens CCNWGS0286]
Length = 435
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F G VY++ + R V + FS + P + V+ +
Sbjct: 208 PRFSPNRQEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 264
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG+ + F S R G + +
Sbjct: 265 ---LQQDGNANIYTMDLRS----RTTTRLTNTSAIDTAPSYSPDGQRVAFESDRGGRQQI 317
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 318 YVMNADGS---GQQRVSFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKTDGSG 370
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G +++ I L G
Sbjct: 371 ERIL----TSGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 414
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 415 NEQLIKTPTFAS-DPAWSP 432
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
VV+ S GP+ A + +++ D DG + VR LT + P SP+ + + + S
Sbjct: 169 VVFVSESGPKTARKRQ------LSIMDQDGFN-VRNLTNSNDIVLTPRFSPNRQEVTYMS 221
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + +D G+ +Y
Sbjct: 222 FEGQQPRVYLLQLETGQREVVGNF---PGMTFSPRFSPDGQKVIMSLQQD----GNANIY 274
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + + A P +SPDG+ + F SD GG +I+
Sbjct: 275 TMDLRSRTTTRLTNTSAIDTA--PSYSPDGQRVAFESDRGGRQ--------------QIY 318
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS +R+ SF DG TP W PR
Sbjct: 319 VMNADGSGQQRV---SFGDGSYSTPVWSPR 345
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + ++ ++L + TR + P
Sbjct: 246 PGM-TFSPRFSPDGQKVIMSLQQDGNANIYTMDL------RSRTTTRLTNTSAIDTAPSY 298
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAF 435
SPD RV + RG G Q+ + N F DGS+ P +SP+GD IAF
Sbjct: 299 SPDGQRVAFESDRG------GRQQIYVMNADGSGQQRVSFG-DGSYSTPVWSPRGDLIAF 351
Query: 436 VEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFAS 482
+ G + V+ +DGS R + F N T W P +++ +GGP+ S
Sbjct: 352 TKQSGGKFSIGVMKTDGSGERILTSGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQLYS 408
>gi|344340294|ref|ZP_08771220.1| Protein tolB [Thiocapsa marina 5811]
gi|343799952|gb|EGV17900.1| Protein tolB [Thiocapsa marina 5811]
Length = 440
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 42/259 (16%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P++SP G RIA+V F N+R + ++ + + +G P F+ +
Sbjct: 214 PAWSPDGRRIAYVSF----------ENKRAAIYVQELASGRRELVASHPGINGSPAFSPD 263
Query: 484 SSEVDII-------SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ + I V D+ VR LT + + PS SPDG+ I+F S R G
Sbjct: 264 GRKLAMTLSKDGNPDIYVLDLTSRELVR-LTDHFAIDTEPSWSPDGQQIIFTSDRGGSPQ 322
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y M + GG + +EG + + +++PDG I + R N G F + +I +
Sbjct: 323 IYRMGSGGGPAQRIS--SEGDY-NARASYAPDGRSIVLVT-RVN---GMFRIGVIDLD-R 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G +L+ +GS + P F+P+ +++ + +GG G + +DG
Sbjct: 375 GFMRLLSNGSLDES--PSFAPNASMVIYATIHGG--------------RGVLAAASIDGG 418
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+RL+Q+S E PAW P
Sbjct: 419 GNQRLSQDSGEVREPAWSP 437
>gi|322435206|ref|YP_004217418.1| WD40-like beta Propeller containing protein [Granulicella
tundricola MP5ACTX9]
gi|321162933|gb|ADW68638.1| WD40-like beta Propeller containing protein [Granulicella
tundricola MP5ACTX9]
Length = 449
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRST 530
++S G + A SS I + D +G S+ RR+T+ + P +P G I + S
Sbjct: 262 AWSSDGKQLAFSSSRTGDNEIYIADANGGSS-RRITSFAGPDVSPVFNPRSGAQIAWISG 320
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-NPGS-GSFEM 588
R+G LY M+ +G G+ RLT+G ++ T +WSP+G+++AFA +R PG+ G ++
Sbjct: 321 RSGLPQLYTMETDGS---GVTRLTDGGYA-TSPSWSPNGQFLAFAWNRKYGPGAPGGQDI 376
Query: 589 YLIHPNGTGLRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
Y++ ++ IQ + G + P +SPDG+ IVF ++P+ +
Sbjct: 377 YVME---IASKRWIQLTHDMGPCDFPSWSPDGRHIVFA-----------NSPNGRASSSK 422
Query: 648 IFKIKLDGSDLKRLT 662
IF + DG+D LT
Sbjct: 423 IFTMLADGTDRHALT 437
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 34/264 (12%)
Query: 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
VT G + +P SP N + +A I++F L+ N+ + +++
Sbjct: 206 VTSLGSVSVSPRVSPDNTR---LAFSSLGKDGFQIKMFSLLLNRMVSFP--AGGGGTNVS 260
Query: 375 PFISPDSSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK-G 430
P S D ++ + R G D N PD+S P F+P+ G
Sbjct: 261 PAWSSDGKQLAFSSSRTGDNEIYIADANGGSSRRITSFAGPDVS--------PVFNPRSG 312
Query: 431 DRIAFVE----FPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
+IA++ P +Y + +DGS R A S W P + + +
Sbjct: 313 AQIAWISGRSGLPQLYTMETDGSGVTRLTDGGYATSPSWSPNGQFLAFAWNRKYGPGAPG 372
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST---RTGYKNLYIMDA 542
DI + + + +LT + FPS SPDG+ IVF ++ R ++ M A
Sbjct: 373 GQDIYVMEIASKRWI----QLTHDMGPCDFPSWSPDGRHIVFANSPNGRASSSKIFTMLA 428
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWS 566
+G + H LT G SD M NWS
Sbjct: 429 DGTD---RHALT-GAGSD-MPNWS 447
>gi|416276886|ref|ZP_11644178.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112]
gi|420379008|ref|ZP_14878501.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 225-75]
gi|320172957|gb|EFW48185.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112]
gi|391306001|gb|EIQ63768.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 225-75]
Length = 430
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---VRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQVRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|149910559|ref|ZP_01899198.1| Periplasmic component of the Tol biopolymer transport system
[Moritella sp. PE36]
gi|149806402|gb|EDM66375.1| Periplasmic component of the Tol biopolymer transport system
[Moritella sp. PE36]
Length = 441
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 32/210 (15%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSGGPEFA 481
RIA+V ++P + + + DG N+ V F++ S WDP + + Y S
Sbjct: 172 RIAYVAINYDDKYPFKLLISDYDGMNQ-HVLFRSTEPVMSPSWDPTGKKLAYMS----ME 226
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
+ E+ I D V+ R L K +N FP SPDG + +++G ++Y+
Sbjct: 227 DKKHEIWI-------YDLVTQKRELIEPYKGSNIFPVFSPDGSKLSMILSKSGQADVYVY 279
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
D + + L RLT+ DT W+PDG+ I F S+R G ++Y I+ +++
Sbjct: 280 DLKTKK---LDRLTKNRGIDTEATWAPDGKSIVFTSER----GGRPQIYQINLESKKIKR 332
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
L G+A +P SPDGK++V S G
Sbjct: 333 LTFEGNANL--NPSISPDGKNLVMVSLQKG 360
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 423 FPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS- 475
FP FSP G +++ + VYV + ++ T W P +++V+TS
Sbjct: 254 FPVFSPDGSKLSMILSKSGQADVYVYDLKTKKLDRLTKNRGIDTEATWAPDGKSIVFTSE 313
Query: 476 --GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
G P+ I IN++ ++RLT G N PS+SPDGK +V S + G
Sbjct: 314 RGGRPQ---------IYQINLES----KKIKRLTFEGNANLNPSISPDGKNLVMVSLQKG 360
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
++ D +GY + +LT G D + +P+G + +++ G + L+
Sbjct: 361 KYSVTKQDL--SDGY-VQKLTNGRL-DKSPSIAPNGSMVIYST----VVKGKQVLSLVSM 412
Query: 594 NGTGLRKLIQSGSAGRANHPYFSP 617
+G K + S G P +SP
Sbjct: 413 DGRF--KAVLPASDGEVKAPAWSP 434
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIA 573
PS P GK + + S ++I D + L E P+ S+ +SPDG ++
Sbjct: 211 PSWDPTGKKLAYMSMEDKKHEIWIYDLVTQK----RELIE-PYKGSNIFPVFSPDGSKLS 265
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
+ SG ++Y+ L +L ++ G ++PDGKSIVFTS+ GG
Sbjct: 266 MILSK----SGQADVYVYDLKTKKLDRLTKN--RGIDTEATWAPDGKSIVFTSERGG--- 316
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+P +I++I L+ +KRLT + P+ P
Sbjct: 317 ---------RP--QIYQINLESKKIKRLTFEGNANLNPSISP 347
>gi|294495630|ref|YP_003542123.1| Periplasmic component of the Tol biopolymer transport system
[Methanohalophilus mahii DSM 5219]
gi|292666629|gb|ADE36478.1| Periplasmic component of the Tol biopolymer transport system
[Methanohalophilus mahii DSM 5219]
Length = 360
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 35/223 (15%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
F D +P++SP G +I ++ ++++++DGSN +Y + DP +++
Sbjct: 38 FSSDYHYPAWSPDGTQITYMNDKAIWIMDADGSNPHVIY--DGMKWDGDP-----CFSAD 90
Query: 477 GPE--FASESSE------VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528
G + FASES + +++ +NVD S + +L T+G + PS+SPDG + +
Sbjct: 91 GKDIYFASESRKPYSSTYLNLFKMNVDG----SNITQL-TDGADRRSPSISPDGSMLAYL 145
Query: 529 STRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
S G ++++MD HR LT + +WSPDG+ + + S +DN
Sbjct: 146 SNIAGNYDIWVMDITNKS----HRQLTFTSEDEGKPSWSPDGDEVIY-SFKDN------- 193
Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++L R+L G++ + P+F P G+ IVF SD GG
Sbjct: 194 LWLTDVEFDKSRQLTH-GTSNDVD-PFFLPSGEKIVFISDRGG 234
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 99/225 (44%), Gaps = 24/225 (10%)
Query: 327 TSPGNNKFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385
++ G + + A +R+P +S+Y ++ ++ + +LT ++ P ISPD S +
Sbjct: 88 SADGKDIYFASESRKPYSSTYLNLFKMNVDGSNITQLTDGADRRS----PSISPDGSMLA 143
Query: 386 YHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVN 445
Y G+ + +++ ++ D PS+SP GD + + +++ +
Sbjct: 144 YLSNIAGNY-----DIWVMDITNKSHRQLTFTSEDEGKPSWSPDGDEVIYSFKDNLWLTD 198
Query: 446 SDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503
+ RQ+ N + P E +V+ S E ++ I+ +D +
Sbjct: 199 VEFDKSRQLTHGTSNDVDPFFLPSGEKIVFIS------DRGGETNLWLIDTEDDE----- 247
Query: 504 RRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
R+L T+ + + P+ PDGK IVF + +L++++ E E
Sbjct: 248 RQLLTDDRKVEYSPAAGPDGKKIVFGARANETFDLWMLEMENPEA 292
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGG 477
PS SP G +A++ ++V++ + RQ+ F ++ W P + V+Y+
Sbjct: 133 PSISPDGSMLAYLSNIAGNYDIWVMDITNKSHRQLTFTSEDEGKPSWSPDGDEVIYS--- 189
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F D+ R+LT N+ P P G+ IVF S R G NL
Sbjct: 190 --FKDNLWLTDV---------EFDKSRQLTHGTSNDVDPFFLPSGEKIVFISDRGGETNL 238
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
+++D E E LT+ + PDG+ I F + R N +F+++++
Sbjct: 239 WLIDTEDDE---RQLLTDDRKVEYSPAAGPDGKKIVFGA-RANE---TFDLWMLE 286
>gi|171463097|ref|YP_001797210.1| translocation protein TolB [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192635|gb|ACB43596.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 403
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 49/287 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
D + Q + + S P IS PS+SP G ++A+V F P +YV + + R
Sbjct: 155 DADGQNIRNAMNSSEPIIS--------PSWSPDGKKVAYVSFEDRKPVIYV--HELATGR 204
Query: 453 QVYFKNAFST----VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
+ N W P + + + S+ I IN D + + RLT
Sbjct: 205 SISLSNQKGNNSAPAWSPDGKKLAIS------LSKDGNTQIYGINADG----TGLHRLTR 254
Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ P S DG++I F S R G +Y M A+G + G+ R+T T SPD
Sbjct: 255 GNTIDTEPQYSADGRYIYFTSDRGGNPQIYRMSADGEQAEGVKRVTFKQGFVTSPRISPD 314
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+++A+ + N G G++ +Y+++ TG + + G++ + P F+ +G+ +++++
Sbjct: 315 GKYLAYIA---NIG-GAYRLYILNL-ATGDAQALTDGTSDES--PSFAANGRYVLYSTKV 367
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GG + + +DG+ + L+ + P+WGP
Sbjct: 368 GGKRI--------------LAAVSVDGNSKRVLSIPGSDVRQPSWGP 400
>gi|22126931|ref|NP_670354.1| translocation protein TolB [Yersinia pestis KIM10+]
gi|45440866|ref|NP_992405.1| translocation protein TolB [Yersinia pestis biovar Microtus str.
91001]
gi|51595503|ref|YP_069694.1| translocation protein TolB [Yersinia pseudotuberculosis IP 32953]
gi|108806599|ref|YP_650515.1| translocation protein TolB [Yersinia pestis Antiqua]
gi|108813034|ref|YP_648801.1| translocation protein TolB [Yersinia pestis Nepal516]
gi|145599837|ref|YP_001163913.1| translocation protein TolB [Yersinia pestis Pestoides F]
gi|149366876|ref|ZP_01888910.1| TolB colicin import protein [Yersinia pestis CA88-4125]
gi|153948506|ref|YP_001401831.1| translocation protein TolB [Yersinia pseudotuberculosis IP 31758]
gi|162418362|ref|YP_001605922.1| translocation protein TolB [Yersinia pestis Angola]
gi|165924647|ref|ZP_02220479.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938286|ref|ZP_02226844.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. IP275]
gi|166011590|ref|ZP_02232488.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166211563|ref|ZP_02237598.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399720|ref|ZP_02305238.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419672|ref|ZP_02311425.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424139|ref|ZP_02315892.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|170025178|ref|YP_001721683.1| translocation protein TolB [Yersinia pseudotuberculosis YPIII]
gi|186894556|ref|YP_001871668.1| translocation protein TolB [Yersinia pseudotuberculosis PB1/+]
gi|218928292|ref|YP_002346167.1| translocation protein TolB [Yersinia pestis CO92]
gi|229841061|ref|ZP_04461220.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843165|ref|ZP_04463311.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229894002|ref|ZP_04509188.1| periplasmic protein [Yersinia pestis Pestoides A]
gi|229903474|ref|ZP_04518587.1| periplasmic protein [Yersinia pestis Nepal516]
gi|270487254|ref|ZP_06204328.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
KIM D27]
gi|294503129|ref|YP_003567191.1| translocation protein TolB precursor [Yersinia pestis Z176003]
gi|384121569|ref|YP_005504189.1| translocation protein TolB precursor [Yersinia pestis D106004]
gi|384125614|ref|YP_005508228.1| translocation protein TolB precursor [Yersinia pestis D182038]
gi|384140828|ref|YP_005523530.1| translocation protein TolB [Yersinia pestis A1122]
gi|384413760|ref|YP_005623122.1| hypothetical protein YPC_1178 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420545754|ref|ZP_15043820.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-01]
gi|420551062|ref|ZP_15048571.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-02]
gi|420556581|ref|ZP_15053454.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-03]
gi|420562161|ref|ZP_15058346.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-04]
gi|420567181|ref|ZP_15062882.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-05]
gi|420572838|ref|ZP_15068019.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-06]
gi|420578174|ref|ZP_15072849.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-07]
gi|420583516|ref|ZP_15077708.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-08]
gi|420588666|ref|ZP_15082349.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-09]
gi|420593984|ref|ZP_15087141.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-10]
gi|420599673|ref|ZP_15092227.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-11]
gi|420605146|ref|ZP_15097122.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-12]
gi|420610500|ref|ZP_15101961.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-13]
gi|420615804|ref|ZP_15106660.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-14]
gi|420621204|ref|ZP_15111421.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-15]
gi|420626265|ref|ZP_15116006.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-16]
gi|420631453|ref|ZP_15120697.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-19]
gi|420636549|ref|ZP_15125261.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-25]
gi|420642134|ref|ZP_15130304.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-29]
gi|420647274|ref|ZP_15135010.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-32]
gi|420652934|ref|ZP_15140087.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-34]
gi|420658440|ref|ZP_15145042.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-36]
gi|420663760|ref|ZP_15149796.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-42]
gi|420668743|ref|ZP_15154313.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-45]
gi|420674037|ref|ZP_15159132.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-46]
gi|420679586|ref|ZP_15164164.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-47]
gi|420684839|ref|ZP_15168868.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-48]
gi|420690008|ref|ZP_15173453.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-52]
gi|420695814|ref|ZP_15178534.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-53]
gi|420701200|ref|ZP_15183139.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-54]
gi|420707196|ref|ZP_15188012.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-55]
gi|420712515|ref|ZP_15192807.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-56]
gi|420717919|ref|ZP_15197542.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-58]
gi|420723520|ref|ZP_15202360.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-59]
gi|420729138|ref|ZP_15207374.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-60]
gi|420734192|ref|ZP_15211937.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-61]
gi|420739665|ref|ZP_15216869.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-63]
gi|420745007|ref|ZP_15221569.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-64]
gi|420750795|ref|ZP_15226520.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-65]
gi|420756064|ref|ZP_15231095.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-66]
gi|420761912|ref|ZP_15235866.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-71]
gi|420767153|ref|ZP_15240596.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-72]
gi|420772142|ref|ZP_15245077.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-76]
gi|420777570|ref|ZP_15249927.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-88]
gi|420783090|ref|ZP_15254758.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-89]
gi|420788434|ref|ZP_15259468.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-90]
gi|420793909|ref|ZP_15264411.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-91]
gi|420799029|ref|ZP_15269016.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-92]
gi|420804377|ref|ZP_15273827.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-93]
gi|420809620|ref|ZP_15278578.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-94]
gi|420815333|ref|ZP_15283697.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-95]
gi|420820507|ref|ZP_15288381.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-96]
gi|420825602|ref|ZP_15292934.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-98]
gi|420831375|ref|ZP_15298156.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-99]
gi|420836225|ref|ZP_15302527.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-100]
gi|420841364|ref|ZP_15307184.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-101]
gi|420846985|ref|ZP_15312257.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-102]
gi|420852406|ref|ZP_15317031.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-103]
gi|420857922|ref|ZP_15321722.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-113]
gi|421762576|ref|ZP_16199373.1| translocation protein TolB [Yersinia pestis INS]
gi|32699710|sp|Q8ZGZ1.1|TOLB_YERPE RecName: Full=Protein TolB; Flags: Precursor
gi|67461941|sp|Q66D90.1|TOLB_YERPS RecName: Full=Protein TolB; Flags: Precursor
gi|118574601|sp|Q1CAF2.1|TOLB_YERPA RecName: Full=Protein TolB; Flags: Precursor
gi|118574602|sp|Q1CFM9.1|TOLB_YERPN RecName: Full=Protein TolB; Flags: Precursor
gi|166229995|sp|A4TNS8.1|TOLB_YERPP RecName: Full=Protein TolB; Flags: Precursor
gi|166988087|sp|A7FKQ3.1|TOLB_YERP3 RecName: Full=Protein TolB; Flags: Precursor
gi|226705901|sp|B2K8G1.1|TOLB_YERPB RecName: Full=Protein TolB; Flags: Precursor
gi|226705902|sp|A9R2G2.1|TOLB_YERPG RecName: Full=Protein TolB; Flags: Precursor
gi|226705903|sp|B1JG47.1|TOLB_YERPY RecName: Full=Protein TolB; Flags: Precursor
gi|21959970|gb|AAM86605.1|AE013906_9 periplasmic protein [Yersinia pestis KIM10+]
gi|45435724|gb|AAS61282.1| TolB colicin import protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588785|emb|CAH20399.1| TolB colicin import protein [Yersinia pseudotuberculosis IP 32953]
gi|108776682|gb|ABG19201.1| TolB colicin import protein [Yersinia pestis Nepal516]
gi|108778512|gb|ABG12570.1| TolB colicin import protein [Yersinia pestis Antiqua]
gi|115346903|emb|CAL19790.1| TolB colicin import protein [Yersinia pestis CO92]
gi|145211533|gb|ABP40940.1| TolB colicin import protein [Yersinia pestis Pestoides F]
gi|149291250|gb|EDM41325.1| TolB colicin import protein [Yersinia pestis CA88-4125]
gi|152960001|gb|ABS47462.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia
pseudotuberculosis IP 31758]
gi|162351177|gb|ABX85125.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
Angola]
gi|165913664|gb|EDR32283.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923707|gb|EDR40839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165989538|gb|EDR41839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207334|gb|EDR51814.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962413|gb|EDR58434.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167050428|gb|EDR61836.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167056988|gb|EDR66751.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169751712|gb|ACA69230.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia
pseudotuberculosis YPIII]
gi|186697582|gb|ACC88211.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia
pseudotuberculosis PB1/+]
gi|229679244|gb|EEO75347.1| periplasmic protein [Yersinia pestis Nepal516]
gi|229689512|gb|EEO81573.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229697427|gb|EEO87474.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703887|gb|EEO90900.1| periplasmic protein [Yersinia pestis Pestoides A]
gi|262361165|gb|ACY57886.1| translocation protein TolB precursor [Yersinia pestis D106004]
gi|262365278|gb|ACY61835.1| translocation protein TolB precursor [Yersinia pestis D182038]
gi|270335758|gb|EFA46535.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
KIM D27]
gi|294353588|gb|ADE63929.1| translocation protein TolB precursor [Yersinia pestis Z176003]
gi|320014264|gb|ADV97835.1| periplasmic protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|342855957|gb|AEL74510.1| translocation protein TolB [Yersinia pestis A1122]
gi|391429755|gb|EIQ91569.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-01]
gi|391430904|gb|EIQ92558.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-02]
gi|391433065|gb|EIQ94439.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-03]
gi|391445729|gb|EIR05830.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-04]
gi|391446543|gb|EIR06577.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-05]
gi|391450444|gb|EIR10078.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-06]
gi|391462122|gb|EIR20674.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-07]
gi|391463246|gb|EIR21669.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-08]
gi|391465325|gb|EIR23531.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-09]
gi|391478776|gb|EIR35660.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-10]
gi|391479888|gb|EIR36625.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-11]
gi|391480052|gb|EIR36765.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-12]
gi|391494067|gb|EIR49348.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-13]
gi|391495173|gb|EIR50300.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-15]
gi|391497931|gb|EIR52745.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-14]
gi|391509786|gb|EIR63373.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-16]
gi|391510693|gb|EIR64199.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-19]
gi|391514918|gb|EIR67983.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-25]
gi|391525440|gb|EIR77584.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-29]
gi|391528221|gb|EIR80063.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-34]
gi|391529268|gb|EIR80983.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-32]
gi|391541939|gb|EIR92447.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-36]
gi|391543748|gb|EIR94051.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-42]
gi|391544745|gb|EIR94924.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-45]
gi|391558838|gb|EIS07684.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-46]
gi|391559484|gb|EIS08256.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-47]
gi|391560733|gb|EIS09337.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-48]
gi|391574094|gb|EIS21048.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-52]
gi|391574682|gb|EIS21537.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-53]
gi|391586334|gb|EIS31643.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-55]
gi|391586859|gb|EIS32108.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-54]
gi|391589972|gb|EIS34792.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-56]
gi|391603337|gb|EIS46538.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-60]
gi|391603676|gb|EIS46837.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-58]
gi|391604904|gb|EIS47854.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-59]
gi|391617684|gb|EIS59202.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-61]
gi|391618415|gb|EIS59846.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-63]
gi|391625309|gb|EIS65828.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-64]
gi|391629426|gb|EIS69364.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-65]
gi|391640806|gb|EIS79309.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-71]
gi|391643313|gb|EIS81493.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-66]
gi|391643400|gb|EIS81576.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-72]
gi|391653027|gb|EIS90037.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-76]
gi|391658717|gb|EIS95093.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-88]
gi|391663727|gb|EIS99546.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-89]
gi|391665797|gb|EIT01343.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-90]
gi|391671930|gb|EIT06822.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-91]
gi|391683890|gb|EIT17625.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-93]
gi|391685326|gb|EIT18878.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-92]
gi|391686234|gb|EIT19678.1| tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-94]
gi|391697955|gb|EIT30310.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-95]
gi|391701631|gb|EIT33614.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-96]
gi|391702607|gb|EIT34478.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-98]
gi|391712093|gb|EIT43003.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-99]
gi|391718506|gb|EIT48746.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-100]
gi|391718898|gb|EIT49097.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-101]
gi|391729726|gb|EIT58685.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-102]
gi|391732738|gb|EIT61269.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-103]
gi|391736382|gb|EIT64415.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis
PY-113]
gi|411176782|gb|EKS46797.1| translocation protein TolB [Yersinia pestis INS]
Length = 430
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVKTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 ASGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGVPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + SPDGK +V S GG
Sbjct: 329 WEGS--QNQNADVSPDGKFLVLVSSNGG 354
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 257 KLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ GV +R+T G N VSPDGK++V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING--GVP--QRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ +T + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQVLTDTLLDET-PSIAPNGTMVIYSSTQ---GLGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|146329411|ref|YP_001210056.1| TolB protein [Dichelobacter nodosus VCS1703A]
gi|146232881|gb|ABQ13859.1| TolB protein [Dichelobacter nodosus VCS1703A]
Length = 424
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 51/290 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQ 453
DG N+ ++ + S +P +S PS+S G +IAF+ + V+ S R+
Sbjct: 179 DGANRQVVYS--SAMPIVS--------PSWSRDGRQIAFMTYARNHAQLVIQDVASGSRR 228
Query: 454 V---YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
V + A S W P + + A E +DI +++ A +R+T +
Sbjct: 229 VVAEFEGTASSPSWSPEGRQLAISR-----ADEQGNMDIYLLDLAS----GAQQRITNHA 279
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ P SPDG++I F S R G +Y MD GG ++R G T SPDG+
Sbjct: 280 AIDTEPEFSPDGRFIYFTSDRAGNPQIYRMDRSGGN---VNRAVVGGNYSTSSELSPDGQ 336
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYG 629
+ R + G +Y + G+G Q+ + GR + FSP+G+ I++T+ G
Sbjct: 337 SMVLT--RQSGGGYQIGLYQL---GSG---SFQALTNGRLDEGATFSPNGQMIMYTATEG 388
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIR 679
G + I I L G + L+ S PAWGP +R
Sbjct: 389 GRTV--------------IKMINLKGGVTQTLSDPSGRLRDPAWGPSLVR 424
>gi|424837101|ref|ZP_18261738.1| translocation protein TolB [Shigella flexneri 5a str. M90T]
gi|383466153|gb|EID61174.1| translocation protein TolB [Shigella flexneri 5a str. M90T]
Length = 430
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGS--QNQDADVSSDGKFMVMVSANGG 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSANGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|317051744|ref|YP_004112860.1| TolB protein [Desulfurispirillum indicum S5]
gi|316946828|gb|ADU66304.1| TolB protein [Desulfurispirillum indicum S5]
Length = 452
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 23/181 (12%)
Query: 427 SPKGDRIAFVE----FPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEF 480
SP G IA +Y+++SDG RQ+ ++ S W P + + S P
Sbjct: 270 SPDGKYIAVTASHNGISNIYLLHSDGRMYRQLTRHWSIDVSPAWSPDGNFIAFVSDRPG- 328
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
S +V +I++ D++ R+T G+ N P SPDG +I + S N+YI+
Sbjct: 329 ---SPQVYMINLRTDEIT------RVTYEGRYNVSPVWSPDGNYIAYTSLEENKFNIYIV 379
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ +G Y RLT + WS DG ++ F S+R +G F++Y++ GT ++
Sbjct: 380 EKDG---YNPQRLTYNSGHNETPRWSRDGNYLLFTSNR----TGEFKLYVMDRTGTFQKR 432
Query: 601 L 601
L
Sbjct: 433 L 433
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASD 577
SPDGK+I ++ G N+Y++ ++G ++R WS D WSPDG +IAF SD
Sbjct: 270 SPDGKYIAVTASHNGISNIYLLHSDG----RMYRQLTRHWSIDVSPAWSPDGNFIAFVSD 325
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPI 636
R GS ++Y+I+ + ++ GR N P +SPDG I +TS
Sbjct: 326 R----PGSPQVYMINLRTDEITRVTYE---GRYNVSPVWSPDGNYIAYTS---------- 368
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ I+ ++ DG + +RLT NS + TP W
Sbjct: 369 ----LEENKFNIYIVEKDGYNPQRLTYNSGHNETPRW 401
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGG 477
P++SP G+ IAFV P VY++N +V ++ + S VW P + YTS
Sbjct: 311 PAWSPDGNFIAFVSDRPGSPQVYMINLRTDEITRVTYEGRYNVSPVWSPDGNYIAYTS-- 368
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
E + +I + + DG + +RLT N +N P S DG +++F S RTG L
Sbjct: 369 -------LEENKFNIYIVEKDGYNP-QRLTYNSGHNETPRWSRDGNYLLFTSNRTGEFKL 420
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
Y+MD G RL +GP ++ M +W
Sbjct: 421 YVMDRTGTFQ---KRLKDGPANNNMPDW 445
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
G A +S I +I + DG R+LT + + P+ SPDG +I F S R G
Sbjct: 273 GKYIAVTASHNGISNIYLLHSDG-RMYRQLTRHWSIDVSPAWSPDGNFIAFVSDRPGSPQ 331
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+++ E + R+T + WSPDG +IA+ S +N F +Y++ +G
Sbjct: 332 VYMINLRTDE---ITRVTYEGRYNVSPVWSPDGNYIAYTSLEEN----KFNIYIVEKDGY 384
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++L + ++G P +S DG ++FTS+ G
Sbjct: 385 NPQRL--TYNSGHNETPRWSRDGNYLLFTSNRTG 416
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG++IA + + G +YL+H +G R+L + S + P +SPDG I F
Sbjct: 270 SPDGKYIAVTASHN----GISNIYLLHSDGRMYRQLTRHWSIDVS--PAWSPDGNFIAFV 323
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP--RFIRPVDV 683
SD G +P +++ I L ++ R+T + +P W P +I +
Sbjct: 324 SDRPG-------SP-------QVYMINLRTDEITRVTYEGRYNVSPVWSPDGNYIAYTSL 369
Query: 684 EEVK 687
EE K
Sbjct: 370 EENK 373
>gi|113460408|ref|YP_718470.1| translocation protein TolB [Haemophilus somnus 129PT]
gi|123031156|sp|Q0I1N1.1|TOLB_HAES1 RecName: Full=Protein TolB; Flags: Precursor
gi|112822451|gb|ABI24540.1| biopolymer transport protein [Haemophilus somnus 129PT]
Length = 434
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
V V + DG N+ VY + S W P + Y S F + S++ + +
Sbjct: 189 VRVADYDGHNQFIVYSSSQPLMSPAWSPDGSKLAYVS----FENRKSQLIVHDLQ----- 239
Query: 499 GVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
S RR+ G N A P+ SPDG I F S++ G N+Y+M+ G + +LT G
Sbjct: 240 --SGARRVIAAFPGHNGA-PAFSPDGSKIAFASSKDGVLNIYVMNLGNGT---ISQLTSG 293
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
++T +WSPDG+ I F SDR +G ++Y + G G+ + SAGR S
Sbjct: 294 AGNNTEPSWSPDGQSIIFTSDR----AGGPQIYQMDVFGNGISLV----SAGRGYSGKIS 345
Query: 617 PDGKSIVF 624
DG +V
Sbjct: 346 ADGSILVM 353
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P+ SPDG + + S L + D + G + P + +SPDG IAFA
Sbjct: 212 PAWSPDGSKLAYVSFENRKSQLIVHDLQSG---ARRVIAAFPGHNGAPAFSPDGSKIAFA 268
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
S +D G +Y+++ G G + SG AG P +SPDG+SI+FTSD G
Sbjct: 269 SSKD----GVLNIYVMNL-GNGTISQLTSG-AGNNTEPSWSPDGQSIIFTSDRAG 317
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 60/287 (20%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG+NQ ++ + PL P++SP G ++A+V F NR+
Sbjct: 195 DGHNQFIVYSSSQPLMS----------PAWSPDGSKLAYVSF----------ENRKSQLI 234
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEV-------DIISINVDDVDGVSAVRRLTTN 509
+ + V A +G P F+ + S++ +++I V ++ G + +LT+
Sbjct: 235 VHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKDGVLNIYVMNL-GNGTISQLTSG 293
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
NN PS SPDG+ I+F S R G +Y MD G G+ ++ G S DG
Sbjct: 294 AGNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVFGN---GISLVSAG--RGYSGKISADG 348
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ DN + TG+ +++ S + P SP+G I+++S G
Sbjct: 349 SILVMIYG-DN--------IVKKDLATGVTEMLSSTFLDES--PSISPNGIMIIYSSTQG 397
Query: 630 GISAEPISTPHQYQPYGEIFK-IKLDGSDLKRLTQNSFEDGTPAWGP 675
G++ + + DG RL + + PAW P
Sbjct: 398 ---------------LGKVLQLVSADGRFKARLPSSDGQIKFPAWSP 429
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 40/206 (19%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y + E+ +QL++ +++S I+ F P+FSP G
Sbjct: 210 MSPAWSPDGSKLAY------VSFENRKSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGS 263
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEF-- 480
+IAF +YV+N Q+ +T W P +++++TS GGP+
Sbjct: 264 KIAFASSKDGVLNIYVMNLGNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQIYQ 323
Query: 481 ----------------------ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A S V I N+ D + V + ++ + PS+
Sbjct: 324 MDVFGNGISLVSAGRGYSGKISADGSILVMIYGDNIVKKDLATGVTEMLSSTFLDESPSI 383
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEG 544
SP+G I++ ST+ K L ++ A+G
Sbjct: 384 SPNGIMIIYSSTQGLGKVLQLVSADG 409
>gi|418539904|ref|ZP_13105479.1| translocation protein TolB [Burkholderia pseudomallei 1258a]
gi|418546154|ref|ZP_13111386.1| translocation protein TolB [Burkholderia pseudomallei 1258b]
gi|385363653|gb|EIF69420.1| translocation protein TolB [Burkholderia pseudomallei 1258a]
gi|385365547|gb|EIF71221.1| translocation protein TolB [Burkholderia pseudomallei 1258b]
Length = 443
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 106 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 165
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 166 KLLGVRGVFNTRLSYVQRTGNIYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 217
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 218 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 270
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 271 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 326
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 327 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 373
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 374 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 410
>gi|392543734|ref|ZP_10290871.1| WD-40-like beta propeller repeat-containing protein
[Pseudoalteromonas piscicida JCM 20779]
Length = 316
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 27/194 (13%)
Query: 422 SFPSFSPKGDRIAFV-EFPG--------VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV 472
S P++S G IAF E+ ++++N+DGS +RQ+ + + + P +
Sbjct: 118 SAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADGSEQRQIKNLDGRAPEFMPDGRLLY 177
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
+ P I++ ++DG S V +LT + +N P +SPDG I + S R
Sbjct: 178 QSKASPS-----------QISIANLDG-SEVIQLTQDDTDNMSPQISPDGTKIAYLSNRD 225
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y+M G +G RLT + +WSPDG + FAS+ G ++++ ++
Sbjct: 226 GNQEVYVM---GIDGTNNKRLTRNNIQEWDPSWSPDGTKVYFASEN---VYGFYDVFSVN 279
Query: 593 PNGTGLRKLIQSGS 606
+GT ++K++Q+ S
Sbjct: 280 VDGTSIKKILQNSS 293
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 36/215 (16%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+I + D DG S V+ + ++ +P+VSP G + F +K I + G L
Sbjct: 49 AIYLSDQDGKSPVK-IVKATSSDGYPAVSPSGDKVTFYGKYDNFKTWSIHTVDI-TGRNL 106
Query: 551 HRLTEGPWS-DTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAG 608
RLT + D+ WS DG IAFA + +N G E++L++ +G+ R++ G
Sbjct: 107 KRLTSKKYVWDSAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADGSEQRQI--KNLDG 164
Query: 609 RANHPYFSPDGK---------SIVFTSDYGGISAEPISTPH------QYQPYG------- 646
RA P F PDG+ S + ++ G ++ Q P G
Sbjct: 165 RA--PEFMPDGRLLYQSKASPSQISIANLDGSEVIQLTQDDTDNMSPQISPDGTKIAYLS 222
Query: 647 ------EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E++ + +DG++ KRLT+N+ ++ P+W P
Sbjct: 223 NRDGNQEVYVMGIDGTNNKRLTRNNIQEWDPSWSP 257
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 133/286 (46%), Gaps = 52/286 (18%)
Query: 396 EDGNNQLLL---ENIKSPLPDISLFRFDGSFPSFSPKGDRIAF------VEFPGVYVVNS 446
+DGN++ + ++ KSP+ + DG +P+ SP GD++ F + ++ V+
Sbjct: 43 KDGNSKAIYLSDQDGKSPVKIVKATSSDG-YPAVSPSGDKVTFYGKYDNFKTWSIHTVDI 101
Query: 447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP--EFASESSEVDII---SINVDDVDGVS 501
G N +++ K VWD A ++ G FA E + + I + + DG
Sbjct: 102 TGRNLKRLTSKKY---VWD---SAPAWSLDGMTIAFAREYENKEGVWQEEIWLMNADGSE 155
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
+ +G+ P PDG+ + ++ + I + +G E + +LT+ +
Sbjct: 156 QRQIKNLDGRA---PEFMPDGR--LLYQSKASPSQISIANLDGSE---VIQLTQDDTDNM 207
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
SPDG IA+ S+RD G+ E+Y++ +GT ++L ++ + P +SPDG
Sbjct: 208 SPQISPDGTKIAYLSNRD----GNQEVYVMGIDGTNNKRLTRNNI--QEWDPSWSPDGTK 261
Query: 622 IVFTSD--YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+ F S+ YG + ++F + +DG+ +K++ QNS
Sbjct: 262 VYFASENVYG---------------FYDVFSVNVDGTSIKKILQNS 292
>gi|395785060|ref|ZP_10464794.1| protein tolB [Bartonella tamiae Th239]
gi|423718039|ref|ZP_17692229.1| protein tolB [Bartonella tamiae Th307]
gi|395425572|gb|EJF91733.1| protein tolB [Bartonella tamiae Th239]
gi|395426472|gb|EJF92599.1| protein tolB [Bartonella tamiae Th307]
Length = 459
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 46/262 (17%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV-YFKN-AFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ + R V F N + + P + V+ +
Sbjct: 231 PRFSPTRQEITYMAYSGNNVPKVYLQQIEMGQRELVGTFPNMTIAPRFSPDGQKVIMS-- 288
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ +I ++++ + RLTT + S SPDG IVF S R G +
Sbjct: 289 ---LLQDNGSANIYTMDLRS----QSTTRLTTTSAIDTAASYSPDGSQIVFESDRGGRQQ 341
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+G R++ G S + WSP G++IAF G F + ++ P+G
Sbjct: 342 IYVMNADGTNQ---QRISFGDGSYSTPVWSPRGDYIAFT----KLSQGQFSIGVMRPDGQ 394
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG-EIFKIKLD 654
G R L + G N P ++P+G+ I+F Q Q G +I+ I +
Sbjct: 395 GERLL----TTGFHNEGPTWAPNGRVIMFF--------------KQNQGQGPKIYTIDIT 436
Query: 655 GSDLKRL-TQNSFEDGTPAWGP 675
G + ++L T N D PAW P
Sbjct: 437 GRNERQLPTPNDASD--PAWSP 456
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG+ + + +DN GS +Y + +L + + A +SPDG IVF
Sbjct: 278 FSPDGQKVIMSLLQDN---GSANIYTMDLRSQSTTRLTTTSAIDTAAS--YSPDGSQIVF 332
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
SD GG +I+ + DG++ +R+ SF DG TP W PR
Sbjct: 333 ESDRGGRQ--------------QIYVMNADGTNQQRI---SFGDGSYSTPVWSPR 370
>gi|170574759|ref|XP_001892951.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi]
gi|158601263|gb|EDP38222.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi]
Length = 693
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 36/210 (17%)
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
E DI +N + + + RLT +A +VSPDG+ IVF S R+G ++IM+++G
Sbjct: 156 EYDIFKVN----EFGTVITRLTNTAGYDAEGAVSPDGRKIVFTSLRSGDPEIWIMNSDGT 211
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG----------------SFEMY 589
E +LT+ D +SPDG I F + R N E+Y
Sbjct: 212 EP---EQLTDELGYDGGPFFSPDGSKIVFRASRPNTTERIQTYKDLLSYNLVSPLEMELY 268
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
I+ +G+GL+K+ G + A P++ PD + I+F+S++ T + + ++
Sbjct: 269 TINVDGSGLKKVTSLGGSNWA--PFYMPDNRHIIFSSNFN-------ETGGHFGAF-NLY 318
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGPRFIR 679
I G D++R+T N E G A+ P F R
Sbjct: 319 MIDEAGGDVERITFN--EGGFDAF-PMFDR 345
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 35/175 (20%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
+RRLT + S+S DGK I+F S R G NL+IMD +G ++T+ +
Sbjct: 536 IRRLTNTSGYDGEASISSDGKHIIFTSRRNGDPNLWIMDIDGKNA---KQITKTIGYEGG 592
Query: 563 CNWSPDGEWIAFASDRDNPGSGSF-----------------EMYLIHPNGTGLRKLIQSG 605
S DG +I F + R S F +++L+H +G+GLR+L ++G
Sbjct: 593 AKLSSDGRFIVFHASRPTSPSQLFKYGWLLRRYNAVELADTQIFLMHSDGSGLRQLTKNG 652
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
+ P F + K I+F S G + + + IF + +DGS+L++
Sbjct: 653 TNL---WPTF-LNNKRILFASS-GILENDAFN----------IFAVNIDGSELEQ 692
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 30/148 (20%)
Query: 425 SFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGP 478
+ SP G +I F P ++++NSDG+ Q+ + + + P +V+ + P
Sbjct: 183 AVSPDGRKIVFTSLRSGDPEIWIMNSDGTEPEQLTDELGYDGGPFFSPDGSKIVFRASRP 242
Query: 479 EFASESS--------------EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
E+++ +INVD S ++++T+ G +N P PD +
Sbjct: 243 NTTERIQTYKDLLSYNLVSPLEMELYTINVDG----SGLKKVTSLGGSNWAPFYMPDNRH 298
Query: 525 IVFRST------RTGYKNLYIMDAEGGE 546
I+F S G NLY++D GG+
Sbjct: 299 IIFSSNFNETGGHFGAFNLYMIDEAGGD 326
>gi|427733608|ref|ZP_18965403.1| translocation protein TolB, partial [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|414066861|gb|EKT47332.1| translocation protein TolB, partial [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 284
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 20 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 75
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 76 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 129
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 130 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 182
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 183 WEGSQNQDAD--VSSDGKFMVMVSSNNG 208
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 57 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 110
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 111 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 164
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 165 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 220
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 221 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 270
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 271 TDGQVKSPAWSP 282
>gi|76811659|ref|YP_334628.1| translocation protein TolB [Burkholderia pseudomallei 1710b]
gi|242315897|ref|ZP_04814913.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 1106b]
gi|76581112|gb|ABA50587.1| tolB protein [Burkholderia pseudomallei 1710b]
gi|242139136|gb|EES25538.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
pseudomallei 1106b]
Length = 463
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 126 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 185
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 186 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 237
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 238 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 290
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 291 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 346
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 347 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 393
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ + GG S
Sbjct: 394 LQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 430
>gi|213649746|ref|ZP_03379799.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 373
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 109 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 164
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 165 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 218
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 219 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 271
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 272 WEGSQNQDAD--VSSDGKFMVMVSSNNG 297
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 146 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 199
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 200 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 253
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 254 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 309
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 310 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 359
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 360 TDGQVKSPAWSP 371
>gi|422804712|ref|ZP_16853144.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253]
gi|324114315|gb|EGC08284.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253]
Length = 430
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 19/171 (11%)
Query: 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
S W P + Y + F S SE+ I ++ A+R++ + ++N P+ S
Sbjct: 203 MSPAWSPDGSKLAYVT----FESGRSELVIQTL------ANGAIRKVASFPRHNGAPAFS 252
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
PDG + F ++TG NLY+MD G+ + ++T+G ++T W PD + +AF SD+
Sbjct: 253 PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQITDGRSNNTEPTWFPDSQNLAFTSDQ- 308
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+G ++Y ++ NG +++ G+ + S DGK +V S GG
Sbjct: 309 ---AGRPQVYKVNINGGAPQRITWEGTQNQDAD--VSSDGKFMVMVSSDGG 354
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G ++L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSELVIQTLANGAIRKVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|218549687|ref|YP_002383478.1| translocation protein TolB [Escherichia fergusonii ATCC 35469]
gi|226705883|sp|B7LKL8.1|TOLB_ESCF3 RecName: Full=Protein TolB; Flags: Precursor
gi|218357228|emb|CAQ89863.1| periplasmic protein [Escherichia fergusonii ATCC 35469]
Length = 430
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 19/171 (11%)
Query: 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
S W P + Y + F S SE+ I ++ A+R++ + ++N P+ S
Sbjct: 203 MSPAWSPDGSKLAYVT----FESGRSELVIQTL------ANGAIRKVASFPRHNGAPAFS 252
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
PDG + F ++TG NLY+MD G+ + ++T+G ++T W PD + +AF SD+
Sbjct: 253 PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQITDGRSNNTEPTWFPDSQNLAFTSDQ- 308
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+G ++Y ++ NG +++ G+ + S DGK +V S GG
Sbjct: 309 ---AGRPQVYKVNINGGAPQRITWEGTQNQDAD--VSSDGKFMVMVSSDGG 354
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G ++L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSELVIQTLANGAIRKVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|374370789|ref|ZP_09628784.1| translocation protein TolB [Cupriavidus basilensis OR16]
gi|373097650|gb|EHP38776.1| translocation protein TolB [Cupriavidus basilensis OR16]
Length = 442
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 43/291 (14%)
Query: 394 TREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEF----PGVYVVNSDG 448
+R G QLL+ + ++L + PS+SP G ++A+V F P VYV +
Sbjct: 183 SRVGGRFQLLISDSDGQNSQVALTSNEPIISPSWSPDGSKVAYVSFEAKKPVVYVHDLAT 242
Query: 449 SNRRQVYFKNAFSTV--WDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504
R V + ++ W P R AV + G I + D S ++
Sbjct: 243 GRRTLVSNQKGNNSAPSWSPDGQRLAVALSRDG--------NTQIYQVGADG----SGLK 290
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RLT + + P +PDG+ I F S R G +Y M A G EG R+T +
Sbjct: 291 RLTRSSAIDTEPQYAPDGRSIYFTSDRGGAPQVYRMPAGGEEGGAAQRVTFKGSYNVSPR 350
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
SPDG+ +A+ + SG F++ L+ + L + + P F+ +GK I++
Sbjct: 351 ISPDGKQLAYITR-----SGGFKLQLMDLGNGDVTSLTDTAN---DEAPSFAANGKYILY 402
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ GG S + + DG + L+ S E P+WGP
Sbjct: 403 ATRVGGRSV--------------LAAVSTDGRTRQVLSLQSGEVREPSWGP 439
>gi|213423404|ref|ZP_03356391.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 267
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 3 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 58
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 59 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 112
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 113 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 165
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 166 WEGSQNQDAD--VSSDGKFMVMVSSNNG 191
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 40 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 93
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 94 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 147
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 148 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 203
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 204 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 253
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 254 TDGQVKSPAWSP 265
>gi|116620509|ref|YP_822665.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076]
gi|116223671|gb|ABJ82380.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076]
Length = 1121
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
S +RLT N + +P SPDG WI F S R G ++Y++ A GG+ +LT D
Sbjct: 51 SGAQRLTDNQARDVYPRFSPDGNWIAFSSNREGNYDVYVVAATGGKP---RQLTFHSADD 107
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
+ NWSPDG+ I F S R N S P G+ + + + A+ +SPDG
Sbjct: 108 NVVNWSPDGKKILFTSARGNGVFPSVMTLWEIPAEGGIERPVPTDWGAWAS---YSPDGS 164
Query: 621 SIVFT 625
+ FT
Sbjct: 165 KLAFT 169
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
G G RLT+ D +SPDG WIAF+S+R+ G++++Y++ G R+L +
Sbjct: 50 GSGAQRLTDNQARDVYPRFSPDGNWIAFSSNRE----GNYDVYVVAATGGKPRQL--TFH 103
Query: 607 AGRANHPYFSPDGKSIVFTSDYG 629
+ N +SPDGK I+FTS G
Sbjct: 104 SADDNVVNWSPDGKKILFTSARG 126
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
+ +SSE+ +I I D + R L T AF S+SP K R+ + ++ +
Sbjct: 296 SGKSSEI-VIDIKADSKEND---RELVTLTDAQAF-SLSPSNK----RAAIVAHGEIFTI 346
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+ GE R++E W + WSP+G+WIAF SDR +G E+YL G +K
Sbjct: 347 ATDRGEP---QRVSESAWKEQEPRWSPNGKWIAFVSDR----TGREEIYLSDELGKNAKK 399
Query: 601 L 601
L
Sbjct: 400 L 400
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 126/323 (39%), Gaps = 87/323 (26%)
Query: 423 FPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTS- 475
+P FSP G+ IAF VYVV + G RQ+ F +A V W P + +++TS
Sbjct: 65 YPRFSPDGNWIAFSSNREGNYDVYVVAATGGKPRQLTFHSADDNVVNWSPDGKKILFTSA 124
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS----- 529
G F S + +I + G+ R + T+ A+ S SPDG + F
Sbjct: 125 RGNGVFPSVMTLWEIPAEG-----GIE--RPVPTDW--GAWASYSPDGSKLAFTRHPATW 175
Query: 530 TRTGYK-----NLYIMDAE-------GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
+R Y+ +L++M+ G E Y +RL W ++ +GE ++
Sbjct: 176 SRKHYRGSYAADLWVMELASKKFTRLGNEDYKGNRL----WP----MYAKNGEIYFVSNQ 227
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSG---------SAGRANHPYFSPDGKSIVFTSDY 628
+N + F + + + K+ + G + G P S DGK+IV+ ++
Sbjct: 228 TENEKNIQFGGPAVMKSVNNIWKISEKGGKETQVTHHADGNLFFPSISADGKTIVYEDNF 287
Query: 629 G------------------------------------GISAEPISTPHQYQPYGEIFKIK 652
G S P + +GEIF I
Sbjct: 288 GIWKLDTASGKSSEIVIDIKADSKENDRELVTLTDAQAFSLSPSNKRAAIVAHGEIFTIA 347
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
D + +R++++++++ P W P
Sbjct: 348 TDRGEPQRVSESAWKEQEPRWSP 370
>gi|440229912|ref|YP_007343705.1| tol-pal system beta propeller repeat protein TolB [Serratia
marcescens FGI94]
gi|440051617|gb|AGB81520.1| tol-pal system beta propeller repeat protein TolB [Serratia
marcescens FGI94]
Length = 430
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
AVR++ + ++N P+ SPDG + F +++G NLY+MD G+ + +LT G ++T
Sbjct: 235 AVRQIASYPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLNSGQ---MTQLTNGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PDG+ +AF SD+ G ++Y + +G ++L G+ + + S DGK
Sbjct: 292 EPAWFPDGQSLAFTSDQ----GGRPQIYKMSASGGAAQRLTWEGAQNQDSE--VSADGKF 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V + G+ I K L ++ LT ++F D TP+ P
Sbjct: 346 LVMVTTNNGVQ--------------HIAKQDLGSGAVQVLT-DTFLDETPSIAP 384
>gi|430745467|ref|YP_007204596.1| Tol biopolymer transport system, periplasmic component-related
protein [Singulisphaera acidiphila DSM 18658]
gi|430017187|gb|AGA28901.1| Tol biopolymer transport system, periplasmic component-related
protein [Singulisphaera acidiphila DSM 18658]
Length = 1099
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
DG VR LT N + FP SPDGKWI F S R G ++YI+ GG+ + RLT
Sbjct: 51 DGTEIVR-LTANKSRDIFPRFSPDGKWIAFSSDREGGLDVYIIPVAGGD---VKRLTVHS 106
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRANHPYFS 616
D + NW+PD + I FAS R G ++Y + +G R G+AG +S
Sbjct: 107 ADDVVLNWNPDSKSILFASQRGEDFMG--KLYTVSVDGGLARNAGPDMGTAGS-----YS 159
Query: 617 PDGKSIVF 624
PDG +
Sbjct: 160 PDGTRLAI 167
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
++PDG+ IVF + R + A EG L ++TEG D +SPDG W+A+ SD
Sbjct: 313 LAPDGERIVF-AVRG-----EVFTAPTDEGGELRQITEGESRDQDVTYSPDGNWLAYVSD 366
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637
+ SG E+Y++ +G G K + A ++++ +SPD KS FT+
Sbjct: 367 K----SGREEIYVLSADGAGEAKQVTDLDALKSSY-LWSPDSKSFAFTT----------- 410
Query: 638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFED-GTPAWGP 675
G+++ I +G DLK L + + P W P
Sbjct: 411 ------ADGKLYTITAEGKDLKELASSKYGRFSRPTWSP 443
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHRLTEGPWSDT 561
+R++T + + SPDG W+ + S ++G + +Y++ A+G GE ++T+ +
Sbjct: 339 LRQITEGESRDQDVTYSPDGNWLAYVSDKSGREEIYVLSADGAGEA---KQVTDLDALKS 395
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
WSPD + AF + ++Y I G L++L S GR + P +SPDG
Sbjct: 396 SYLWSPDSKSFAFT-------TADGKLYTITAEGKDLKELASS-KYGRFSRPTWSPDGNW 447
Query: 622 IVFT 625
I ++
Sbjct: 448 IAYS 451
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 35/232 (15%)
Query: 423 FPSFSPKGDRIAFV-EFPG---VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSG 476
FP FSP G IAF + G VY++ G + +++ +A V W+P +++++ S
Sbjct: 67 FPRFSPDGKWIAFSSDREGGLDVYIIPVAGGDVKRLTVHSADDVVLNWNPDSKSILFASQ 126
Query: 477 -GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-KWIVFRSTRTGY 534
G +F + + +++VD +A + T G S SPDG + + R T+ +
Sbjct: 127 RGEDFMGK-----LYTVSVDGGLARNAGPDMGTAG------SYSPDGTRLAINRKTQPYW 175
Query: 535 KNLY---------IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
+ Y +MD LT+ D+ WS DG I F SDRD+ +
Sbjct: 176 RKYYRGAYQSDVTVMDLALKS---FKDLTDYDGVDSWPMWSQDGH-IYFVSDRDD--NAQ 229
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637
++ + +G G + G P S DGK+IVF D+G + + I+
Sbjct: 230 TNLWRVSESG-GEATRVTDFHEGDVRFPALSSDGKTIVFERDFGIVKLDLIT 280
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY-GGISAEPISTPHQYQPY 645
+++ +GT + +L + S R P FSPDGK I F+SD GG+
Sbjct: 44 DIWTAKEDGTEIVRLTANKS--RDIFPRFSPDGKWIAFSSDREGGL-------------- 87
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I + G D+KRLT +S +D W P
Sbjct: 88 -DVYIIPVAGGDVKRLTVHSADDVVLNWNP 116
>gi|424817057|ref|ZP_18242208.1| translocation protein TolB [Escherichia fergusonii ECD227]
gi|325498077|gb|EGC95936.1| translocation protein TolB [Escherichia fergusonii ECD227]
Length = 431
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 19/171 (11%)
Query: 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
S W P + Y + F S SE+ I ++ A+R++ + ++N P+ S
Sbjct: 204 MSPAWSPDGSKLAYVT----FESGRSELVIQTL------ANGAIRKVASFPRHNGAPAFS 253
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
PDG + F ++TG NLY+MD G+ + ++T+G ++T W PD + +AF SD+
Sbjct: 254 PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQITDGRSNNTEPTWFPDSQNLAFTSDQ- 309
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+G ++Y ++ NG +++ G+ + S DGK +V S GG
Sbjct: 310 ---AGRPQVYKVNINGGAPQRITWEGTQNQDAD--VSSDGKFMVMVSSDGG 355
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G ++L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSELVIQTLANGAIRKVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNING----GAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|410085250|ref|ZP_11281969.1| tolB protein precursor protein [Morganella morganii SC01]
gi|421492238|ref|ZP_15939599.1| hypothetical protein MU9_0766 [Morganella morganii subsp. morganii
KT]
gi|455738555|ref|YP_007504821.1| tolB protein precursor protein [Morganella morganii subsp. morganii
KT]
gi|400193394|gb|EJO26529.1| hypothetical protein MU9_0766 [Morganella morganii subsp. morganii
KT]
gi|409767959|gb|EKN52023.1| tolB protein precursor protein [Morganella morganii SC01]
gi|455420118|gb|AGG30448.1| tolB protein precursor protein [Morganella morganii subsp. morganii
KT]
Length = 430
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 36/235 (15%)
Query: 443 VVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V + DG N+ V+ + S W P E + Y + F S SS + I +++ V
Sbjct: 184 VSDYDGYNQFTVHRSPEPLMSPAWSPDGEKLAYVT----FESGSSALVIQNLSSGQV--- 236
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
R++ + ++N P+ SPDG + F ++TG NLY+MD G+ + ++T+G ++
Sbjct: 237 ---RQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLGSGQ---MRQVTDGRSNN 290
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T +W PD + +AF SD+ +G ++Y + NG +L G+ + S DG
Sbjct: 291 TEPSWFPDSQTLAFTSDQ----AGRPQIYKVGINGGAPERLTWDGTQNQNGD--VSADGS 344
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S GG I K L ++ + LT ++F D TP+ P
Sbjct: 345 FLVMVSSGGGKQ--------------HIAKQDLVANNFQILT-DTFLDETPSIAP 384
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 35/290 (12%)
Query: 335 IAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394
IA + + YRH EL + + + T SP+ ++P SPD ++ Y T
Sbjct: 167 IAYVVVKNSGDYRH-ELRVSDYDGYNQFTVHRSPEPL-MSPAWSPDGEKLAY------VT 218
Query: 395 REDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGS 449
E G++ L+++N+ S + ++ F P+FSP G ++AF +YV++
Sbjct: 219 FESGSSALVIQNLSSGQVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLGSG 278
Query: 450 NRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
RQV + +T W P + + +TS ++ I + ++ A RLT
Sbjct: 279 QMRQVTDGRSNNTEPSWFPDSQTLAFTS------DQAGRPQIYKVGING----GAPERLT 328
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
+G N VS DG ++V S+ G +++ D LT+ + D + +P
Sbjct: 329 WDGTQNQNGDVSADGSFLVMVSSGGGKQHIAKQDLVANN---FQILTD-TFLDETPSIAP 384
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+G + ++S + G G+ + L+ +G +L + G+ P +SP
Sbjct: 385 NGTMVIYSSSQ---GMGTI-LQLVSTDGRFKARL--PATDGQVKFPAWSP 428
>gi|440694195|ref|ZP_20876831.1| kinase domain protein [Streptomyces turgidiscabies Car8]
gi|440283827|gb|ELP71033.1| kinase domain protein [Streptomyces turgidiscabies Car8]
Length = 734
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 36/258 (13%)
Query: 422 SFPSFSPKGDRIAF----VEFPGVYVVNSDGSNRRQVYFKNAFSTVWDP--VREAVVYTS 475
+ P +SP AF + V+ N+DGS R++ + W P R AV+ +
Sbjct: 506 ALPQWSPDHSSFAFTRKTAQGSAVWTANADGSGARRIAAISGGRVSWSPDGERLAVLRRA 565
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G + + ++NV D + ++LT P+ SPDGK I +T
Sbjct: 566 DGVQ--------QLFAVNVSD----GSAQQLTHGSGKVEDPAWSPDGKLIAVCLQKTSGW 613
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++++D + G ++T P WSPD + A+ + G+G ++ + +G
Sbjct: 614 QVHVVDPDR-PGAEPRQVTNQPRRALDAVWSPDSRYFAYTAGAPGEGTGG-DIRIAKADG 671
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ + L+++ A + P +SPDGK + F P P I+ I+ DG
Sbjct: 672 SDDKSLVRT--AAQEMDPVWSPDGKWVAFVRG-------PFDRP-------AIWAIRADG 715
Query: 656 SDLKRLTQNSFEDGTPAW 673
+ ++LT S +G P+W
Sbjct: 716 TGARKLTTGSTPEGHPSW 733
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 21/180 (11%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+ DG A R +G ++ SPDG+ + G + L+ ++ G +LT
Sbjct: 533 NADGSGARRIAAISGGRVSW---SPDGERLAVLRRADGVQQLFAVNVSDGSA---QQLTH 586
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
G WSPDG+ IA + + ++++++ P+ G + RA +
Sbjct: 587 GSGKVEDPAWSPDGKLIAVCLQK----TSGWQVHVVDPDRPGAEPRQVTNQPRRALDAVW 642
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPD + +T+ G G+I K DGSD K L + + ++ P W P
Sbjct: 643 SPDSRYFAYTAGAPGEGTG-----------GDIRIAKADGSDDKSLVRTAAQEMDPVWSP 691
>gi|289804344|ref|ZP_06534973.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 285
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 21 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 76
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 77 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 130
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 131 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 183
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 184 WEGSQNQDAD--VSSDGKFMVMVSSNNG 209
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 58 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 111
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 112 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 165
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 166 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 221
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 222 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 271
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 272 TDGQVKSPAWSP 283
>gi|445274669|ref|ZP_21410506.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|444887763|gb|ELY11447.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 394
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 130 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 185
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 186 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 239
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 240 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 292
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 293 WEGSQNQDAD--VSSDGKFMVMVSSNNG 318
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 167 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 220
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 221 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 274
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 275 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 330
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 331 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 380
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 381 TDGQVKSPAWSP 392
>gi|82621714|gb|ABB86530.1| putative aminopeptidase [uncultured Bacteroidetes bacterium
'SBI2-18 P41A3']
Length = 354
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I + D+DG + + +LT +A +VSP G IVF STR G +LY M+ +G
Sbjct: 139 DSFDIFISDLDG-NIINQLTDEKGYDAEATVSPLGDKIVFTSTRNGDIDLYTMNIDGA-- 195
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T D +SPDG I F S R D G E+Y+
Sbjct: 196 -NVKQITFDLGYDGGAFFSPDGSKIIFRSSRPKSEEQIKEYQDLLDQGLVQPTEMELYIC 254
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+G LR+L G+A + P F P G+ I+F+S++ P + ++ I
Sbjct: 255 DSDGKNLRQLTDLGNANWS--PVFHPSGEKILFSSNFESERGFPFN----------LYMI 302
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
LDG +L R+T + D P +
Sbjct: 303 DLDGKNLTRVTHSETFDAFPVF 324
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 35/182 (19%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P+ + +V+TS + + ++D+ ++N+D + V+++T + + SPDG I
Sbjct: 170 PLGDKIVFTS------TRNGDIDLYTMNIDGAN----VKQITFDLGYDGGAFFSPDGSKI 219
Query: 526 VFRSTR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+FRS+R Y++L YI D++G L L WS +
Sbjct: 220 IFRSSRPKSEEQIKEYQDLLDQGLVQPTEMELYICDSDGKNLRQLTDLGNANWSPV---F 276
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
P GE I F+S+ ++ F +Y+I +G L ++ S + P FS DGK + F+
Sbjct: 277 HPSGEKILFSSNFESERGFPFNLYMIDLDGKNLTRVTHSETFDA--FPVFSRDGKKLAFS 334
Query: 626 SD 627
S+
Sbjct: 335 SN 336
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 427 SPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGGPEF 480
SP GD+I F +Y +N DG+N +Q+ F + + P +++ S P+
Sbjct: 169 SPLGDKIVFTSTRNGDIDLYTMNIDGANVKQITFDLGYDGGAFFSPDGSKIIFRSSRPKS 228
Query: 481 ASESSEV-DIIS----------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
+ E D++ + + D DG + +R+LT G N P P G+ I+F S
Sbjct: 229 EEQIKEYQDLLDQGLVQPTEMELYICDSDGKN-LRQLTDLGNANWSPVFHPSGEKILFSS 287
Query: 530 TRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
+ NLY++D +G L R+T D +S DG+ +AF+S+R+N G+
Sbjct: 288 NFESERGFPFNLYMIDLDGK---NLTRVTHSETFDAFPVFSRDGKKLAFSSNRNNNGTRE 344
Query: 586 FEMYL 590
+++
Sbjct: 345 TNLFI 349
>gi|421748226|ref|ZP_16185852.1| translocation protein TolB [Cupriavidus necator HPC(L)]
gi|409773072|gb|EKN54937.1| translocation protein TolB [Cupriavidus necator HPC(L)]
Length = 424
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VYV + R V + N + W P +
Sbjct: 185 PSWSPDGAKVAYVSFEAKKPVVYVHDLATGRRTLVSNQKGNNSAPAWSPDGRHLALA--- 241
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S I +N D S +RRL+ + + P SPDG+ I F S R G +
Sbjct: 242 ---LSRDGNTQIYQVNADG----SGLRRLSRSSAIDTEPQYSPDGRHIYFTSDRGGAPQI 294
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A G E R+T + SPDG+ +A+ S G F++ L+
Sbjct: 295 YRMPAAGEESGAAQRVTFKGNYNVSPRVSPDGKQLAYISR-----GGGFKLQLMDLGSGD 349
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+ L + + P F+ +GK I++ + GG + + + DG
Sbjct: 350 VTALTDTAN---DEAPSFAANGKYILYATRVGGRAV--------------LAAVSTDGRT 392
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ S E P+WGP
Sbjct: 393 KQVLSLQSGEVREPSWGP 410
>gi|407778391|ref|ZP_11125655.1| translocation protein TolB [Nitratireductor pacificus pht-3B]
gi|407299762|gb|EKF18890.1| translocation protein TolB [Nitratireductor pacificus pht-3B]
Length = 437
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 48/286 (16%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG NQ L + +S + P FSP I ++ + P VY++ + R
Sbjct: 191 QDGANQRFLTDGRSIVLT----------PRFSPTRQEITYMSYEGGQPQVYLLQLETGQR 240
Query: 452 RQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
V + F+ + P + +V + + S +D+ S N RLTT
Sbjct: 241 ELVGNFPGMTFAPRFSPGGQQIVMSLLRDDGNSNIFVMDLRSRNTT---------RLTTA 291
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ PS SPDG +VF S R G +Y+M A GG R++ G + + WSP G
Sbjct: 292 NAIDTSPSYSPDGNQVVFTSDRGGRAQIYVMSAAGGNP---QRISFGDGTYSTPVWSPRG 348
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ IAF G F++ ++ +G+G R L S P ++P+G+ ++F
Sbjct: 349 DLIAFTKQT----GGEFQIGVMRTDGSGERIL---SSGFLQEGPTWAPNGRVLMFFRQPA 401
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G S +++ I L G +++ +F PAW P
Sbjct: 402 GSSGP------------QLYSIDLTGRHEQKIPTVNF-GSDPAWSP 434
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 31/192 (16%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+ + + D DG A +R T+G++ P SP + I + S G +Y++ E G+
Sbjct: 183 VKKLAIMDQDG--ANQRFLTDGRSIVLTPRFSPTRQEITYMSYEGGQPQVYLLQLETGQ- 239
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ P +SP G+ I + RD+ S F M L N T L + +
Sbjct: 240 --RELVGNFPGMTFAPRFSPGGQQIVMSLLRDDGNSNIFVMDLRSRNTTRL-----TTAN 292
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P +SPDG +VFTSD GG +I+ + G + +R+ SF
Sbjct: 293 AIDTSPSYSPDGNQVVFTSDRGG--------------RAQIYVMSAAGGNPQRI---SFG 335
Query: 668 DGT---PAWGPR 676
DGT P W PR
Sbjct: 336 DGTYSTPVWSPR 347
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 300 PQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK 358
PQ L+ E+ + V PG+ F P SPG + + R +S +I + DL
Sbjct: 228 PQVYLLQLETGQRELVGNFPGM-TFAPRFSPGGQQIVMSLLRDDGNS--NIFVMDLRSRN 284
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR 418
TR + +P SPD ++V + RGG Q+ + + P F
Sbjct: 285 ---TTRLTTANAIDTSPSYSPDGNQVVFTSDRGGRA------QIYVMSAAGGNPQRISFG 335
Query: 419 FDGSF--PSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
DG++ P +SP+GD IAF + G + V+ +DGS R
Sbjct: 336 -DGTYSTPVWSPRGDLIAFTKQTGGEFQIGVMRTDGSGER 374
>gi|218516474|ref|ZP_03513314.1| translocation protein TolB [Rhizobium etli 8C-3]
Length = 229
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + FS + P + V+ +
Sbjct: 2 PRFSPNRQEVTYMSFANQQPRVYMLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMS--- 58
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT+ + PS SPDG + F S R G +
Sbjct: 59 ---LQQEGNSNIYTMDLRS----RKTTRLTSTAAIDTSPSYSPDGARVSFESDRGGKPQI 111
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 112 YVMNADGS---GQTRISFGDGSYSTPVWSPRGDLIAFTKQ----AGGKFSIGVMKPDGSG 164
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 165 ERIL----TTGFHNEGPTWAPNGRVLMFFRQAAGAGGP------------QLYSIDLTGY 208
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L + PAW P
Sbjct: 209 N-EQLVKTPSYGSDPAWSP 226
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 42/194 (21%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F+P SP K I + S +I DL K TR S +P
Sbjct: 40 PGM-TFSPRFSPDGQKVIMSLQQEGNS---NIYTMDLRSRK---TTRLTSTAAIDTSPSY 92
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD +RV + RGG + DG+ Q + DGS+ P +SP+G
Sbjct: 93 SPDGARVSFESDRGGKPQIYVMNADGSGQTRIS------------FGDGSYSTPVWSPRG 140
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ DGS R + F N T W P +++ +GGP+
Sbjct: 141 DLIAFTKQAGGKFSIGVMKPDGSGERILTTGFHNEGPT-WAPNGRVLMFFRQAAGAGGPQ 199
Query: 480 FASESSEVDIISIN 493
S +D+ N
Sbjct: 200 LYS----IDLTGYN 209
>gi|307102700|gb|EFN50969.1| hypothetical protein CHLNCDRAFT_141607 [Chlorella variabilis]
Length = 357
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 124/305 (40%), Gaps = 48/305 (15%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTS 475
P + K RIAFV P ++ + DGS+ RQ+ + V W P + V Y+
Sbjct: 26 PEATAKNGRIAFVRATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDRVAYS- 84
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRT- 532
I + D + +RRLT G P+ SPDG++IVF T
Sbjct: 85 -----GRHDGVWKIWEVQADG----TGLRRLTDGPPGAAIMVPAFSPDGRFIVFEGTEAD 135
Query: 533 GYKNLYIMDA-EGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
G ++ DA +GG L + P +D SPDG+ +AFASDR N G ++++L
Sbjct: 136 GSTTVWRADAADGGNATRLTPADQSPSITDMGAKPSPDGQLLAFASDRGN-APGQYDVWL 194
Query: 591 IH-----PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
+ P+G G+R + A ++PD + +V S GG+ ++ +
Sbjct: 195 MEGWQQAPDGPGVRLHRLTAGANNTLSRSWAPDSRRLVLNSMRGGVGRICVADVPAAEAA 254
Query: 646 GEIFKIKLDGSDLKRLTQNSFE----------------DGTPAWGPRFIRPVDVEEVKNE 689
+ +D + L LT + D TPAW P R + N
Sbjct: 255 LDALAAPIDAARLLCLTNTTSTPNGPWSPGGMFPTVDGDATPAWSPDGSR---IAFSSNR 311
Query: 690 QCAFE 694
+FE
Sbjct: 312 AGSFE 316
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 140/345 (40%), Gaps = 78/345 (22%)
Query: 372 HLNPFISPDSSRVGYHKCRGG------STREDGNNQLLLENIKSPLPDISLFRFDGSFPS 425
H++P + + R+ + + GG + DG++ + + D+ + PS
Sbjct: 23 HVHPEATAKNGRIAFVRATGGRDPALWTMLPDGSD---MRQLTPSSGDMEVH------PS 73
Query: 426 FSPKGDRIAFV-EFPGVYV---VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
+SP GDR+A+ GV+ V +DG+ R++ + + P ++ G
Sbjct: 74 WSPSGDRVAYSGRHDGVWKIWEVQADGTGLRRLTDGPPGAAIMVPA-----FSPDGRFIV 128
Query: 482 SESSEVDIISI--NVDDVDGVSAVRRLTTNGKNNAFPSV----SPDGKWIVFRSTRT--- 532
E +E D + D DG +A R LT ++ + + SPDG+ + F S R
Sbjct: 129 FEGTEADGSTTVWRADAADGGNATR-LTPADQSPSITDMGAKPSPDGQLLAFASDRGNAP 187
Query: 533 GYKNLYIMD----AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR---------D 579
G ++++M+ A G G LHRLT G + +W+PD + S R D
Sbjct: 188 GQYDVWLMEGWQQAPDGPGVRLHRLTAGANNTLSRSWAPDSRRLVLNSMRGGVGRICVAD 247
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY----------------FSPDGKSIV 623
P + + L P R L + + N P+ +SPDG I
Sbjct: 248 VPAAEAALDALAAPI-DAARLLCLTNTTSTPNGPWSPGGMFPTVDGDATPAWSPDGSRIA 306
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
F+S+ G EIF + DGSD++RLT ED
Sbjct: 307 FSSNRAGSF--------------EIFSMAADGSDVRRLTFTPRED 337
>gi|238026337|ref|YP_002910568.1| translocation protein TolB [Burkholderia glumae BGR1]
gi|237875531|gb|ACR27864.1| translocation protein TolB [Burkholderia glumae BGR1]
Length = 430
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 156/385 (40%), Gaps = 89/385 (23%)
Query: 330 GNNKFIAVATRRPTSSYRHIE--LFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N +A R + ++ LFD VK + + + KT H + FI
Sbjct: 93 GANALVAGTVNREANGQVKVDFMLFDTVKQQSLGGLSLTATGDVEGMRKTGHKIADFIYQ 152
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
S+R+ Y GG R D + + + + S P IS P++SP
Sbjct: 153 KLLGVRGVFSTRLSYVTHSGGKYRLLISDSDGENAIPALTSSEPIIS--------PAWSP 204
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 205 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWAPDGQTLAVA------L 257
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDG+WI F S R G +Y M
Sbjct: 258 SLTGNTQIYSVSATG----TGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGQPQIYRMP 313
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
A+G R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 314 AQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 360
Query: 602 IQSGSAGRANH------PYFSPDGKSIVFTSDYGG---ISAEPI--STPHQYQPYGEIFK 650
+Q+G+A + P F+ +G+ I++ + GG ++A P S+P Q P
Sbjct: 361 LQTGAANAVTNTTHDESPSFAANGQYILYATRAGGRSVLAAVPSDGSSPPQILP------ 414
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
+ SF + P+WGP
Sbjct: 415 ----------VQGGSFSE--PSWGP 427
>gi|424903054|ref|ZP_18326567.1| translocation protein TolB [Burkholderia thailandensis MSMB43]
gi|390930927|gb|EIP88328.1| translocation protein TolB [Burkholderia thailandensis MSMB43]
Length = 406
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 66/386 (17%)
Query: 281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVAT- 339
F + S SV + L ++G S V F + G N F+A +
Sbjct: 20 FVNEASLPQQVTSVVRADLARSGKFSNVDAGSTPVPETASVDFGAWKAKGANAFVAGSVN 79
Query: 340 RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISPD--------SS 382
R P Y+ + L+D +K + + + KT H + +I ++
Sbjct: 80 REPNGQYKVNFILYDTIKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNT 139
Query: 383 RVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF- 438
R+ Y + G + D + Q + + S P IS P++SP G ++A+V F
Sbjct: 140 RLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSPSGTKVAYVSFE 191
Query: 439 ---PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
P VY+ + + RR V N + W P + + S + I S+
Sbjct: 192 LRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------LSLTGNTQIYSV 244
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
+ + +RRLT + + P SPDGKWI F S R G +Y M AEG R
Sbjct: 245 SSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQR 300
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG---- 608
+T +T SPDG+ +A+ S G F++Y+ + +Q+G+A
Sbjct: 301 VTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV---------QDLQTGAANAVTN 347
Query: 609 --RANHPYFSPDGKSIVFTSDYGGIS 632
R P F+ +G+ I++ + GG S
Sbjct: 348 TTRDESPSFAANGQYILYATQSGGRS 373
>gi|121594093|ref|YP_985989.1| translocation protein TolB [Acidovorax sp. JS42]
gi|120606173|gb|ABM41913.1| TolB, N-terminal domain protein [Acidovorax sp. JS42]
Length = 443
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P + Y S F S
Sbjct: 180 RIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWAPTGTQLAYVS----FESRKP 235
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V V DV + RRL N + +N+ P+ SPDG+ + +R G LY +DA G
Sbjct: 236 VV-----YVHDV--ATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANG 288
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR GS ++Y + +G G ++ +
Sbjct: 289 GEP---RRLMQSSGIDTEPVFSSDGRSIYFVSDR----GGSPQVYRVAASGGGAERVTFN 341
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + P SPDG+ + + S GG
Sbjct: 342 GSYNIS--PSISPDGQWLAYISRVGG 365
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 69/288 (23%)
Query: 348 HIELFDLVKNKFIELTRFVSPKT------HHLNPFISPD--------SSRVGYHKCRGGS 393
L+D+VK + + FV + H + F+ S+R+ Y G
Sbjct: 131 RFRLWDVVKAQDLGGQSFVVTQADLRLVAHRIADFVYEKLTGERGIFSTRIAYVTKAGSR 190
Query: 394 TR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNS 446
D + + + SP P IS P+++P G ++A+V F P VYV +
Sbjct: 191 YSLWVADADGENAQSALSSPEPIIS--------PAWAPTGTQLAYVSFESRKPVVYVHDV 242
Query: 447 DGSNRRQVY-FKNAFST-VWDPVREAVVYT---------------SGGPEFASESSEVDI 489
RR + F+ + S W P + T G P +SS +D
Sbjct: 243 ATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDT 302
Query: 490 ISINVDDVDGV-------------------SAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
+ D + R+T NG N PS+SPDG+W+ + S
Sbjct: 303 EPVFSSDGRSIYFVSDRGGSPQVYRVAASGGGAERVTFNGSYNISPSISPDGQWLAYISR 362
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
G L++MD + G + + +D +++P+ I +A+ +
Sbjct: 363 VGGAYKLHVMDLKSGSVTAVTDTS----ADENPSFAPNSRLIVYATQQ 406
>gi|219847845|ref|YP_002462278.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485]
gi|219542104|gb|ACL23842.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM
9485]
Length = 618
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
F VSPDGK I F S R G +Y+M+++G + RLT P +D WSPDG +AF
Sbjct: 524 FARVSPDGKQIAFASDRDGNWEIYVMNSDGSN---VRRLTNNPATDDAPTWSPDGRQLAF 580
Query: 575 ASDRDNPGSGSFEMYLIHPN 594
ASDRD G FE+Y+++ N
Sbjct: 581 ASDRD----GDFEIYILNVN 596
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAE---------GGEGYGLHRLTEGPWSDTMCNWS 566
P+ SPDG+ + + + G +Y D G E L LT +D S
Sbjct: 469 PTWSPDGRSLFWVTNCEGNFEIYRADVRYYYIDTLYAGVELVNLLNLTNNAANDRFARVS 528
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG+ IAFASDRD G++E+Y+++ +G+ +R+L + + A P +SPDG+ + F S
Sbjct: 529 PDGKQIAFASDRD----GNWEIYVMNSDGSNVRRLTNNPATDDA--PTWSPDGRQLAFAS 582
Query: 627 DYGG 630
D G
Sbjct: 583 DRDG 586
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 72/173 (41%), Gaps = 36/173 (20%)
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN-----WSPDGEWI 572
VSPDG +VF S RTG LY+ ++T D CN WSPDG +
Sbjct: 422 VSPDGNLMVFVSERTGAPQLYLRRLNIPLRGFAQQITS---YDPACNVETPTWSPDGRSL 478
Query: 573 AFASDRDNPGSGSFEMY-------LIHPNGTGLRKLIQSGSAGRANHPYF---SPDGKSI 622
+ ++ + G+FE+Y I G+ + A + F SPDGK I
Sbjct: 479 FWVTNCE----GNFEIYRADVRYYYIDTLYAGVELVNLLNLTNNAANDRFARVSPDGKQI 534
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
F SD G EI+ + DGS+++RLT N D P W P
Sbjct: 535 AFASDRDG--------------NWEIYVMNSDGSNVRRLTNNPATDDAPTWSP 573
>gi|167563919|ref|ZP_02356835.1| translocation protein TolB [Burkholderia oklahomensis EO147]
gi|167571054|ref|ZP_02363928.1| translocation protein TolB [Burkholderia oklahomensis C6786]
Length = 433
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 157/383 (40%), Gaps = 85/383 (22%)
Query: 330 GNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A +R P Y+ + L+D VK + + + KT H + +I
Sbjct: 96 GANAFVAGSVSREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 156 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELKKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLSVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AEGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+Q+G+A R P F+ +G+ I++ + GG G + + DG
Sbjct: 364 LQTGAANAVTNTTRDESPSFAANGQYILYATQSGG--------------RGVLAAVPSDG 409
Query: 656 SDLKRLTQNSFEDGT---PAWGP 675
S ++ S + G P+WGP
Sbjct: 410 SAPPQIL--SVQGGAIREPSWGP 430
>gi|152969308|ref|YP_001334417.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|420036238|ref|ZP_14549899.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|150954157|gb|ABR76187.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|397407057|gb|EJJ98460.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
Length = 418
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P + Y + F S
Sbjct: 154 RIAYVVQKNGGQYPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 209
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ ++VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 210 GRSALVVQTL------ANASVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 263
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 264 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 316
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 317 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLETGGVQVLS 360
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 361 -STFLDETPSLAP 372
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 191 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANASVRQIASFPQHNGAPAFSPDGS 244
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 245 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 298
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 299 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLETG 354
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 355 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 404
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 405 TDGQVKSPAWSP 416
>gi|347734869|ref|ZP_08867846.1| Protein tolB [Azospirillum amazonense Y2]
gi|346922046|gb|EGY02563.1| Protein tolB [Azospirillum amazonense Y2]
Length = 444
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N D + R++V + F+ + P V+ +
Sbjct: 212 PRFSPTAQEITYLSYFNNRPRVYIFNVD-TGRQEVLGDFPGMTFAPRFSPDGNKVIMS-- 268
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+++ DI +++ RLT N + PS SPDG I F S R G +
Sbjct: 269 ----LAQNGNTDIYLLDLR----TRRQTRLTDNPAIDTAPSFSPDGSKITFESDRGGSQQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y M+A+G + R+T G WSP G+ IAF R N G F + +I P+G+
Sbjct: 321 IYTMNADGTN---VQRITFGAGKYGTPVWSPRGDLIAFT--RIN--GGRFSIGVIRPDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R+L + P ++P+G+ +++ E + Q ++ I L G
Sbjct: 374 GEREL---STGYLVEGPTWAPNGRVLMYFK-------EKPTGEGGRQRQVRLYSIDLTGR 423
Query: 657 DLKR-LTQNSFEDGTPAWGP 675
+ ++ LT D PAW P
Sbjct: 424 NERQMLTPTDASD--PAWSP 441
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 33/181 (18%)
Query: 506 LTTNGKNNAF----------PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+ +G+NN + P SP + I + S +YI + + G L +
Sbjct: 192 MDQDGENNLYLTDGRVLVLTPRFSPTAQEITYLSYFNNRPRVYIFNVDTGRQ---EVLGD 248
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +SPDG + + ++ G+ ++YL+ +L + + A P F
Sbjct: 249 FPGMTFAPRFSPDGNKVIMSLAQN----GNTDIYLLDLRTRRQTRLTDNPAIDTA--PSF 302
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SPDG I F SD GG +I+ + DG++++R+T + + GTP W P
Sbjct: 303 SPDGSKITFESDRGGSQ--------------QIYTMNADGTNVQRITFGAGKYGTPVWSP 348
Query: 676 R 676
R
Sbjct: 349 R 349
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP NK I + + I L DL + TR P
Sbjct: 250 PGM-TFAPRFSPDGNKVIMSLAQNGNTD---IYLLDLRTRR---QTRLTDNPAIDTAPSF 302
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD S++ + RGGS + DG N + I+ P +SP+GD
Sbjct: 303 SPDGSKITFESDRGGSQQIYTMNADGTN----------VQRITFGAGKYGTPVWSPRGDL 352
Query: 433 IAFVEFPG----VYVVNSDGSNRRQV 454
IAF G + V+ DGS R++
Sbjct: 353 IAFTRINGGRFSIGVIRPDGSGEREL 378
>gi|115377195|ref|ZP_01464407.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1]
gi|310821212|ref|YP_003953570.1| peptidase m28 [Stigmatella aurantiaca DW4/3-1]
gi|115365778|gb|EAU64801.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1]
gi|309394284|gb|ADO71743.1| Peptidase M28 [Stigmatella aurantiaca DW4/3-1]
Length = 927
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 41/207 (19%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D+ N D S V RLT +A +V I+F STR G +LY MD +GG
Sbjct: 141 DVFKANADG----SGVTRLTETPGYDAEGTVCAKDGSIIFTSTRDGDIDLYRMDKDGGN- 195
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS----------------GSFEMYLI 591
+ RLT P D ++ D I + + R PG E+Y+
Sbjct: 196 --VRRLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQGLLARGLVRPSKLELYVA 253
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG---EI 648
+ +G+ +++ +A A P+F P+G+ I+F+S+YG P G +I
Sbjct: 254 NADGSEAKQITWLNAASFA--PFFHPNGQRILFSSNYG-------------DPKGREFDI 298
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + +DGS+L+R+T DG P + P
Sbjct: 299 WAVNVDGSNLERITTAPGFDGFPMFSP 325
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTS--GGPEFASESSEVDIISINVDD 496
+YV N+DGS +Q+ + NA F+ + P + ++++S G P + E DI ++NVD
Sbjct: 250 LYVANADGSEAKQITWLNAASFAPFFHPNGQRILFSSNYGDP----KGREFDIWAVNVDG 305
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
S + R+TT + FP SPDGKW+ F S R
Sbjct: 306 ----SNLERITTAPGFDGFPMFSPDGKWLAFSSNRA 337
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V+ N+DGS ++ + E V G + + + DI +D G
Sbjct: 142 VFKANADGSGVTRLTETPGYDA------EGTVCAKDGSIIFTSTRDGDIDLYRMDKDGG- 194
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-------TGYKNL-------------YIM 540
VRRLT + + D IV+R++R Y+ L Y+
Sbjct: 195 -NVRRLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQGLLARGLVRPSKLELYVA 253
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+A+G E + L ++ + P+G+ I F+S+ +P F+++ ++ +G+ L +
Sbjct: 254 NADGSEAKQITWLNAASFAPF---FHPNGQRILFSSNYGDPKGREFDIWAVNVDGSNLER 310
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSD 627
+ + G P FSPDGK + F+S+
Sbjct: 311 ITTA--PGFDGFPMFSPDGKWLAFSSN 335
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL-YIMDAEGGEGY 548
+ + V + DG S +++T + P P+G+ I+F S K + + A +G
Sbjct: 248 LELYVANADG-SEAKQITWLNAASFAPFFHPNGQRILFSSNYGDPKGREFDIWAVNVDGS 306
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN-PGSGSFEMYL 590
L R+T P D +SPDG+W+AF+S+R PG G ++L
Sbjct: 307 NLERITTAPGFDGFPMFSPDGKWLAFSSNRATAPGQGDTNVFL 349
>gi|301058341|ref|ZP_07199374.1| putative Tol-Pal system beta propeller repeat protein TolB [delta
proteobacterium NaphS2]
gi|300447577|gb|EFK11309.1| putative Tol-Pal system beta propeller repeat protein TolB [delta
proteobacterium NaphS2]
Length = 205
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 470 AVVYTSGGPEFA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
+ G E A S DI +I D+ G +R+L + + P+ SPDG +
Sbjct: 24 GACWAPNGKELALTMSHKGNPDIFTI---DLQG-KILRQLVEHWGIDVSPAFSPDGTKLA 79
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F S R+G +Y+++ G + RLT +T WS IAF D G F
Sbjct: 80 FVSNRSGSPQIYLLEISSGR---VDRLTYEGSYNTSPAWSALNR-IAFVGKTD----GHF 131
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
+++ + P+G+G+++L + +G P +SPDG+ I F+SD G
Sbjct: 132 DIFTMAPDGSGMKRL--TADSGNNEDPCWSPDGRYIAFSSDRTGAY-------------- 175
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
I+ + +G +R+T + +P+WGP+
Sbjct: 176 HIYMMNANGRTQRRITFEKGKQTSPSWGPQ 205
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPV-REAVVYTSG 476
P+FSP G ++AFV P +Y++ ++ ++ +++T W + R A V +
Sbjct: 69 PAFSPDGTKLAFVSNRSGSPQIYLLEISSGRVDRLTYEGSYNTSPAWSALNRIAFVGKTD 128
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
G DI ++ D S ++RLT + NN P SPDG++I F S RTG +
Sbjct: 129 G--------HFDIFTMAPDG----SGMKRLTADSGNNEDPCWSPDGRYIAFSSDRTGAYH 176
Query: 537 LYIMDAEG 544
+Y+M+A G
Sbjct: 177 IYMMNANG 184
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 426 FSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPE 479
++P G +A P ++ ++ G RQ+ ++ S + P + + S
Sbjct: 27 WAPNGKELALTMSHKGNPDIFTIDLQGKILRQLVEHWGIDVSPAFSPDGTKLAFVSN--- 83
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
S S ++ ++ I+ VD RLT G N P+ S + I F G+ +++
Sbjct: 84 -RSGSPQIYLLEISSGRVD------RLTYEGSYNTSPAWSALNR-IAFVGKTDGHFDIFT 135
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
M +G G+ RLT ++ WSPDG +IAF+SDR +G++ +Y+++ NG R
Sbjct: 136 MAPDGS---GMKRLTADSGNNEDPCWSPDGRYIAFSSDR----TGAYHIYMMNANGRTQR 188
Query: 600 KLIQSGSAGRANHPYFSP 617
++ + G+ P + P
Sbjct: 189 RI--TFEKGKQTSPSWGP 204
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 26/179 (14%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A+RRL+ N +P+GK + + G +++ +D +G L +L E D
Sbjct: 11 ALRRLSGRSGLNIGACWAPNGKELALTMSHKGNPDIFTIDLQGKI---LRQLVEHWGIDV 67
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+SPDG +AF S+R SGS ++YL+ + + +L GS + P +S +
Sbjct: 68 SPAFSPDGTKLAFVSNR----SGSPQIYLLEISSGRVDRLTYEGSYNTS--PAWSALNR- 120
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP--RFI 678
I F G + +IF + DGS +KRLT +S + P W P R+I
Sbjct: 121 IAFVGKTDG--------------HFDIFTMAPDGSGMKRLTADSGNNEDPCWSPDGRYI 165
>gi|167554282|ref|ZP_02348023.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205321483|gb|EDZ09322.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 431
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNNG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|444970437|ref|ZP_21287804.1| WD40-like Beta Propeller Repeat family protein, partial
[Escherichia coli 99.1793]
gi|444578870|gb|ELV54891.1| WD40-like Beta Propeller Repeat family protein, partial
[Escherichia coli 99.1793]
Length = 210
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
AVR++ + ++N P+ SPDG + F ++TG NLY+MD G+ + ++T+G ++T
Sbjct: 15 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 71
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +AF SD+ +G ++Y ++ NG +++ GS + S DGK
Sbjct: 72 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGS--QNQDADVSSDGKF 125
Query: 622 IVFTSDYGG 630
+V S GG
Sbjct: 126 MVMVSSNGG 134
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 418 RFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAV 471
R +G+ P+FSP G ++AF +YV++ RQV + +T W P + +
Sbjct: 24 RHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 82
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
+TS ++ + +N++ A +R+T G N VS DGK++V S+
Sbjct: 83 AFTS------DQAGRPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSN 132
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G +++ D G G+ L+ + D + +P+G + ++S + G GS + L+
Sbjct: 133 GGQQHIAKQDLATG---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLV 184
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSP 617
+G +L + G+ P +SP
Sbjct: 185 STDGRFKARL--PATDGQVKFPAWSP 208
>gi|344942851|ref|ZP_08782138.1| Protein tolB [Methylobacter tundripaludum SV96]
gi|344260138|gb|EGW20410.1| Protein tolB [Methylobacter tundripaludum SV96]
Length = 427
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 112/267 (41%), Gaps = 58/267 (21%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKNAFST-VWDPVREAVVYTSGG 477
P++SP G +IA+V F +Y+ + G R F W P + T
Sbjct: 204 PAWSPDGRKIAYVSFEKKSAAIYIQTLATGERARVAEFPGINGAPSWSPDGAKLALT--- 260
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ DI +N+ ++ +LT + + P+ SPDG IVF S R G L
Sbjct: 261 ---LSKDGSPDIYILNLV----TRSLTKLTKSFAIDTEPTWSPDGSHIVFTSDRGGKPQL 313
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM ++GGE RLT + ++SPDG+ IA ++H NG+
Sbjct: 314 YIMSSQGGEE---KRLTFSGNYNARASFSPDGKSIA----------------MVHGNGSD 354
Query: 598 LR--------KLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
R K + + GR++ P F+P+G I++ S G G +
Sbjct: 355 YRIAVMDMATKSVNVITDGRSDESPSFAPNGSMILYASRKGSA--------------GYL 400
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ LDG ++L +S E PAW P
Sbjct: 401 SAVSLDGKMQQKLVFDSSEIREPAWSP 427
>gi|238893776|ref|YP_002918510.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262041200|ref|ZP_06014412.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|329998744|ref|ZP_08303198.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
MS 92-3]
gi|419762421|ref|ZP_14288668.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
gi|238546092|dbj|BAH62443.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259041429|gb|EEW42488.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328538571|gb|EGF64675.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
MS 92-3]
gi|397744602|gb|EJK91813.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQKNGGQYPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ ++VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVVQTL------ANASVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 330 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLETGGVQVLS 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -STFLDETPSLAP 385
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANASVRQIASFPQHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 312 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLETG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|415908204|ref|ZP_11552938.1| Tol biopolymer transport system, periplasmic component, partial
[Herbaspirillum frisingense GSF30]
gi|407762832|gb|EKF71608.1| Tol biopolymer transport system, periplasmic component, partial
[Herbaspirillum frisingense GSF30]
Length = 180
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
G A + + + V + DG S +RRLT + + P SPDG I F S R+G
Sbjct: 4 GSRLAVALTRDGLTQVYVINADG-SGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQ 62
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNG 595
+Y + +GG R+T + SPDG+ +AF S RD G F++Y + NG
Sbjct: 63 VYKVGLDGGS---PQRVTFNGSYNISPRISPDGKTLAFISRRD----GLFQLYALDLTNG 115
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
R GR P F+P+GK I++ ++ G G + + +DG
Sbjct: 116 QETRL----SDGGRDQSPSFAPNGKYIMYATESG--------------RRGSLAVVSVDG 157
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+RLT + + P WGP
Sbjct: 158 RIKQRLTTQAGDIREPTWGP 177
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 427 SPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GG 477
SP G R+A VYV+N+DGS R++ T + P ++ +TS GG
Sbjct: 1 SPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGG 60
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ + + +D + +R+T NG N P +SPDGK + F S R G L
Sbjct: 61 PQ---------VYKVGLDG----GSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQL 107
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
Y +D G+ RL++G D +++P+G++I +A++ GS
Sbjct: 108 YALDLTNGQ---ETRLSDG-GRDQSPSFAPNGKYIMYATESGRRGS 149
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 20/110 (18%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG +A A RD G ++Y+I+ +G+GLR+L S AG P FSPDG SI FT
Sbjct: 1 SPDGSRLAVALTRD----GLTQVYVINADGSGLRRLTNS--AGIDTEPQFSPDGGSIYFT 54
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SD G +++K+ LDG +R+T N + +P P
Sbjct: 55 SDRSGGP--------------QVYKVGLDGGSPQRVTFNGSYNISPRISP 90
>gi|417508061|ref|ZP_12174520.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353649861|gb|EHC92380.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 309
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 45 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 100
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 101 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 154
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 155 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 207
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 208 WEGSQNQDAD--VSSDGKFMVMVSSNNG 233
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 82 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 135
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 136 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 189
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 190 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 245
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 246 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 295
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 296 TDGQVKSPAWSP 307
>gi|365139007|ref|ZP_09345588.1| protein tolB [Klebsiella sp. 4_1_44FAA]
gi|378977741|ref|YP_005225882.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033885|ref|YP_005953798.1| translocation protein TolB [Klebsiella pneumoniae KCTC 2242]
gi|402781731|ref|YP_006637277.1| tolB protein precursor, periplasmic protein [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419976369|ref|ZP_14491767.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419977878|ref|ZP_14493176.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419984628|ref|ZP_14499773.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419993157|ref|ZP_14508103.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419996754|ref|ZP_14511554.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420002819|ref|ZP_14517468.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420006832|ref|ZP_14521328.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420012612|ref|ZP_14526925.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420020864|ref|ZP_14535049.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420024138|ref|ZP_14538152.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420031127|ref|ZP_14544950.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420041968|ref|ZP_14555463.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420047062|ref|ZP_14560380.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420054146|ref|ZP_14567321.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420058880|ref|ZP_14571890.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420064230|ref|ZP_14577040.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420069598|ref|ZP_14582253.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420076226|ref|ZP_14588698.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420082753|ref|ZP_14595046.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421912983|ref|ZP_16342687.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421918430|ref|ZP_16347959.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424829680|ref|ZP_18254408.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424934400|ref|ZP_18352772.1| Protein tolB [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425077602|ref|ZP_18480705.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425080562|ref|ZP_18483659.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425088235|ref|ZP_18491328.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425090623|ref|ZP_18493708.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428150080|ref|ZP_18997870.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428933942|ref|ZP_19007479.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428933974|ref|ZP_19007510.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428937303|ref|ZP_19010608.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428943544|ref|ZP_19016423.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|428943574|ref|ZP_19016448.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|449060909|ref|ZP_21738447.1| translocation protein TolB [Klebsiella pneumoniae hvKP1]
gi|339761013|gb|AEJ97233.1| translocation protein TolB [Klebsiella pneumoniae KCTC 2242]
gi|363654692|gb|EHL93581.1| protein tolB [Klebsiella sp. 4_1_44FAA]
gi|364517152|gb|AEW60280.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397340674|gb|EJJ33870.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397353418|gb|EJJ46492.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397353605|gb|EJJ46673.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397359129|gb|EJJ51831.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397364162|gb|EJJ56795.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397370469|gb|EJJ63043.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397381488|gb|EJJ73659.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397385679|gb|EJJ77774.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397387535|gb|EJJ79560.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399521|gb|EJJ91173.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397400867|gb|EJJ92505.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397417527|gb|EJK08692.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397417821|gb|EJK08984.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397423422|gb|EJK14354.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397433839|gb|EJK24482.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397436204|gb|EJK26798.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397442846|gb|EJK33188.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397447331|gb|EJK37525.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397451941|gb|EJK42018.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402539221|gb|AFQ63370.1| tolB protein precursor, periplasmic protein [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|405590581|gb|EKB64094.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405601327|gb|EKB74480.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405606207|gb|EKB79202.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405614307|gb|EKB87028.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407808587|gb|EKF79838.1| Protein tolB [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410113208|emb|CCM85312.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410119292|emb|CCM90584.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414707105|emb|CCN28809.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426296466|gb|EKV59096.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|426296520|gb|EKV59141.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|426296553|gb|EKV59168.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|426303876|gb|EKV66034.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|426303953|gb|EKV66109.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|427539971|emb|CCM94008.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448873538|gb|EMB08625.1| translocation protein TolB [Klebsiella pneumoniae hvKP1]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQKNGGQYPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ ++VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANASVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLETGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANASVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLETG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|163854963|ref|YP_001629261.1| translocation protein TolB [Bordetella petrii DSM 12804]
gi|163258691|emb|CAP40990.1| TolB protein precursor [Bordetella petrii]
Length = 439
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 128/304 (42%), Gaps = 50/304 (16%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y RG + D + Q ++S P IS P++SP G ++A+V
Sbjct: 174 STRIAYVLKRGNTYELQVADADGQNPQVALRSREPVIS--------PAWSPDGSKLAYVS 225
Query: 438 F----PGVYVVNSDGSNRRQVY-FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
F P VYV S R V FK N + W P G + A + +
Sbjct: 226 FESGKPVVYVHTLATSARIPVANFKGNNSAPAWSP---------DGSKLAVALTRDGLSQ 276
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + DG S +RRLT + + P +PDG+ I+F S R+G +Y +GG+
Sbjct: 277 IYIVGADGSSNMRRLTRSPGIDTEPIFTPDGRSIIFTSDRSGGPQIYQTSLDGGDA---R 333
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
RLT + SPDG + + + RD G+F + + TG L+ G +A
Sbjct: 334 RLTFNGSYNISPRISPDGSTLLYVARRD----GAFRIASLQL-ATGNETLLTDGRDDQA- 387
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P F+P+G I++ + G S + + DG + L+ + E P
Sbjct: 388 -PSFAPNGMQILYAAVQNGRSV--------------LAGVSSDGRVRQTLSVLNGEIREP 432
Query: 672 AWGP 675
WGP
Sbjct: 433 TWGP 436
>gi|83312310|ref|YP_422574.1| translocation protein TolB [Magnetospirillum magneticum AMB-1]
gi|118574583|sp|Q2W2B0.1|TOLB_MAGSA RecName: Full=Protein TolB; Flags: Precursor
gi|82947151|dbj|BAE52015.1| Periplasmic component of the Tol biopolymer transport system
[Magnetospirillum magneticum AMB-1]
Length = 447
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 40/261 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY+ N D R + + F+ + P VV++
Sbjct: 215 PRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESLGNFPGMTFAPRFSPDGNKVVFS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+E+ +I +N+ R+LT N + PS SPDG+ IVF S R G + +
Sbjct: 272 ---MAENGNTEIYEMNLL----TRQKRQLTMNPAIDTAPSYSPDGQQIVFESDRGGGQQI 324
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R++ G WSP G+ IAF + G F + ++ +G+G
Sbjct: 325 YTMSADGSNP---QRISFGDGRYGTPVWSPRGDLIAFTKQK----GGQFFIGVMRTDGSG 377
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI---FKIKLD 654
R L + P ++P+G+ + F + +P + G++ + I L
Sbjct: 378 ERLLAE---GFLVEGPTWAPNGRVLSFFRE----------SPSDERGRGQVVRLYTIDLT 424
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + +R+ + PAW P
Sbjct: 425 GVN-ERVLLTPVDGSDPAWSP 444
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+++ D DG + R T+G P SP + I + S G +YI + + G L
Sbjct: 192 LSIMDQDGEN--HRFLTDGSELVLTPRFSPSAREITYLSYFKGVPRVYIFNLDTGRRESL 249
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
P +SPDG + F+ + G+ E+Y ++ R+L + + A
Sbjct: 250 GNF---PGMTFAPRFSPDGNKVVFSMAEN----GNTEIYEMNLLTRQKRQLTMNPAIDTA 302
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG+ IVF SD GG +I+ + DGS+ +R++ GT
Sbjct: 303 --PSYSPDGQQIVFESDRGGGQ--------------QIYTMSADGSNPQRISFGDGRYGT 346
Query: 671 PAWGPR 676
P W PR
Sbjct: 347 PVWSPR 352
>gi|53725631|ref|YP_103660.1| translocation protein TolB [Burkholderia mallei ATCC 23344]
gi|166998276|ref|ZP_02264136.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei PRL-20]
gi|262193278|ref|YP_001081486.2| translocation protein TolB [Burkholderia mallei NCTC 10247]
gi|67461934|sp|Q62I10.1|TOLB_BURMA RecName: Full=Protein TolB; Flags: Precursor
gi|52429054|gb|AAU49647.1| tolB protein [Burkholderia mallei ATCC 23344]
gi|243065356|gb|EES47542.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei PRL-20]
gi|261826004|gb|ABN03191.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei NCTC 10229]
gi|261835072|gb|ABO06119.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei NCTC 10247]
Length = 433
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 96 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 156 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ GG S
Sbjct: 364 LQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRS 400
>gi|167837694|ref|ZP_02464577.1| translocation protein TolB [Burkholderia thailandensis MSMB43]
Length = 433
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 66/386 (17%)
Query: 281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVAT- 339
F + S SV + L ++G S V F + G N F+A +
Sbjct: 47 FVNEASLPQQVTSVVRADLARSGKFSNVDAGSTPVPETASVDFGAWKAKGANAFVAGSVN 106
Query: 340 RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISPD--------SS 382
R P Y+ + L+D +K + + + KT H + +I ++
Sbjct: 107 REPNGQYKVNFILYDTIKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNT 166
Query: 383 RVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF- 438
R+ Y + G + D + Q + + S P IS P++SP G ++A+V F
Sbjct: 167 RLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSPSGTKVAYVSFE 218
Query: 439 ---PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
P VY+ + + RR V N + W P + + S + I S+
Sbjct: 219 LRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------LSLTGNTQIYSV 271
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
+ + +RRLT + + P SPDGKWI F S R G +Y M AEG R
Sbjct: 272 SSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQR 327
Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG---- 608
+T +T SPDG+ +A+ S G F++Y+ + +Q+G+A
Sbjct: 328 VTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV---------QDLQTGAANAVTN 374
Query: 609 --RANHPYFSPDGKSIVFTSDYGGIS 632
R P F+ +G+ I++ + GG S
Sbjct: 375 TTRDESPSFAANGQYILYATQSGGRS 400
>gi|417371800|ref|ZP_12142272.1| TolB protein [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|417453671|ref|ZP_12163351.1| TolB protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417536384|ref|ZP_12189551.1| TolB protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353607112|gb|EHC61129.1| TolB protein [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|353635463|gb|EHC81761.1| TolB protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353670438|gb|EHD07047.1| TolB protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 295
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 31 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 86
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 87 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 140
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 141 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 193
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 194 WEGSQNQDAD--VSSDGKFMVMVSSNNG 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 68 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 121
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 122 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 175
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 176 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 231
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 232 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 281
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 282 TDGQVKSPAWSP 293
>gi|260768866|ref|ZP_05877800.1| TolB protein precursor [Vibrio furnissii CIP 102972]
gi|260616896|gb|EEX42081.1| TolB protein precursor [Vibrio furnissii CIP 102972]
Length = 450
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDGK + + S + G +YIM+ GE
Sbjct: 202 LRVADYDGYN--ERLVLRSKQPLMSPAWSPDGKKLAYVSFQNGQAEIYIMNIYTGE---R 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG+ +A + +GS ++Y + RKL Q ++GR+
Sbjct: 257 EKVTSYPRHNGAPRFSPDGKTLALVLSK----TGSLQVYTLDLTS---RKLTQI-TSGRS 308
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P+++PDGKS++FTSD GG +P +I+++ L KRLT
Sbjct: 309 NNTEPFWNPDGKSLIFTSDRGG------------KP--QIYQVNLTDGATKRLT 348
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 39/221 (17%)
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSF 426
K ++P SPD ++ Y + ++G ++ + NI + + S R +G+ P F
Sbjct: 219 KQPLMSPAWSPDGKKLAY------VSFQNGQAEIYIMNIYTGEREKVTSYPRHNGA-PRF 271
Query: 427 SPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS---GG 477
SP G +A V + + V D ++R+ + S W+P +++++TS G
Sbjct: 272 SPDGKTLALVLSKTGSLQVYTLDLTSRKLTQITSGRSNNTEPFWNPDGKSLIFTSDRGGK 331
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ I +N+ D A +RLT G N ++PDG+++V + NL
Sbjct: 332 PQ---------IYQVNLTD----GATKRLTWQGSQNLGGQITPDGRFLVMVNRSNSGFNL 378
Query: 538 YIMDAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFAS 576
D E G L + L E P + +P+G + ++S
Sbjct: 379 AKQDLETGSVQILTKTLLDESP------SIAPNGGMVIYSS 413
>gi|238561025|ref|ZP_00442669.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei GB8 horse 4]
gi|254175452|ref|ZP_04882112.1| tolB protein [Burkholderia mallei ATCC 10399]
gi|254202357|ref|ZP_04908720.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei FMH]
gi|254356407|ref|ZP_04972683.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei 2002721280]
gi|147746604|gb|EDK53681.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei FMH]
gi|148025404|gb|EDK83558.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei 2002721280]
gi|160696496|gb|EDP86466.1| tolB protein [Burkholderia mallei ATCC 10399]
gi|238525395|gb|EEP88823.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei GB8 horse 4]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 93 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 152
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 153 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 204
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 205 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 257
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 258 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 313
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 314 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 360
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ GG S
Sbjct: 361 LQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRS 397
>gi|421887500|ref|ZP_16318655.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379982854|emb|CCF90928.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|161615018|ref|YP_001588983.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168238898|ref|ZP_02663956.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240606|ref|ZP_02665538.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264358|ref|ZP_02686331.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467689|ref|ZP_02701526.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820117|ref|ZP_02832117.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194443806|ref|YP_002039989.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450069|ref|YP_002044782.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194470048|ref|ZP_03076032.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737053|ref|YP_002113855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197250927|ref|YP_002145709.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197264907|ref|ZP_03164981.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198244972|ref|YP_002214718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390881|ref|ZP_03217492.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929894|ref|ZP_03220915.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|238911681|ref|ZP_04655518.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|374978775|ref|ZP_09720117.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378955883|ref|YP_005213370.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378983347|ref|YP_005246502.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|379699961|ref|YP_005241689.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|386590662|ref|YP_006087062.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|416423126|ref|ZP_11690649.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416428604|ref|ZP_11693958.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416439690|ref|ZP_11700330.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416444908|ref|ZP_11704023.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416449555|ref|ZP_11706782.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416459456|ref|ZP_11713957.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416467119|ref|ZP_11717239.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416473698|ref|ZP_11719829.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416486644|ref|ZP_11725151.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416503102|ref|ZP_11732873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416509093|ref|ZP_11736374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416522981|ref|ZP_11740800.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416528628|ref|ZP_11744021.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416538691|ref|ZP_11749548.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416545469|ref|ZP_11753323.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416554738|ref|ZP_11758436.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416561018|ref|ZP_11761573.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416565871|ref|ZP_11763651.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416576387|ref|ZP_11769022.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416584757|ref|ZP_11774395.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416601474|ref|ZP_11785019.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416625816|ref|ZP_11798661.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416626731|ref|ZP_11798795.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416642800|ref|ZP_11805952.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416657705|ref|ZP_11813889.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668200|ref|ZP_11818783.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678496|ref|ZP_11822685.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692251|ref|ZP_11826398.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416705521|ref|ZP_11830930.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416713487|ref|ZP_11837129.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416719181|ref|ZP_11841037.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416724326|ref|ZP_11844786.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416732710|ref|ZP_11849895.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741066|ref|ZP_11854897.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416748270|ref|ZP_11858632.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416758088|ref|ZP_11863469.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416764784|ref|ZP_11868287.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416769093|ref|ZP_11870902.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417325099|ref|ZP_12111167.1| TolB protein [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|417340181|ref|ZP_12121568.1| TolB protein [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|417347680|ref|ZP_12126824.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417364293|ref|ZP_12137270.1| TolB protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417381691|ref|ZP_12147928.1| TolB protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417411529|ref|ZP_12158175.1| TolB protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417527652|ref|ZP_12184889.1| TolB protein [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|418484840|ref|ZP_13053831.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418507089|ref|ZP_13073415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418510794|ref|ZP_13077069.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418763508|ref|ZP_13319625.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418764610|ref|ZP_13320707.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771619|ref|ZP_13327625.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774536|ref|ZP_13330504.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782018|ref|ZP_13337887.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785580|ref|ZP_13341411.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418790601|ref|ZP_13346374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418793566|ref|ZP_13349294.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797238|ref|ZP_13352926.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418801423|ref|ZP_13357058.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418808272|ref|ZP_13363828.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418812429|ref|ZP_13367953.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418825728|ref|ZP_13380997.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832637|ref|ZP_13387572.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837857|ref|ZP_13392719.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841092|ref|ZP_13395913.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418844535|ref|ZP_13399325.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851776|ref|ZP_13406483.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854400|ref|ZP_13409075.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418860560|ref|ZP_13415137.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865472|ref|ZP_13419950.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418867792|ref|ZP_13422245.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419787463|ref|ZP_14313175.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795321|ref|ZP_14320922.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|161364382|gb|ABX68150.1| hypothetical protein SPAB_02778 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402469|gb|ACF62691.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408373|gb|ACF68592.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456412|gb|EDX45251.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194712555|gb|ACF91776.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629207|gb|EDX48575.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197214630|gb|ACH52027.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197243162|gb|EDY25782.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288350|gb|EDY27731.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197939488|gb|ACH76821.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603326|gb|EDZ01872.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204320888|gb|EDZ06089.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205339859|gb|EDZ26623.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343003|gb|EDZ29767.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347159|gb|EDZ33790.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|312911775|dbj|BAJ35749.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226327|gb|EFX51378.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322615818|gb|EFY12736.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322621377|gb|EFY18233.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623634|gb|EFY20472.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628904|gb|EFY25685.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634886|gb|EFY31616.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636586|gb|EFY33290.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641771|gb|EFY38405.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647827|gb|EFY44307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651359|gb|EFY47741.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652660|gb|EFY49009.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658641|gb|EFY54902.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664930|gb|EFY61121.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668401|gb|EFY64557.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322675251|gb|EFY71327.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|323129060|gb|ADX16490.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323191722|gb|EFZ76975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200616|gb|EFZ85691.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202287|gb|EFZ87335.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323212128|gb|EFZ96953.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216147|gb|EGA00876.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221362|gb|EGA05781.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226785|gb|EGA10976.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230999|gb|EGA15115.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234168|gb|EGA18257.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238137|gb|EGA22195.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243572|gb|EGA27590.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247403|gb|EGA31362.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251392|gb|EGA35264.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256485|gb|EGA40217.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260624|gb|EGA44233.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264695|gb|EGA48197.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270959|gb|EGA54394.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761305|gb|AEK67839.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|340761307|gb|AEK67840.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|340761309|gb|AEK67841.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|340761311|gb|AEK67842.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|340761313|gb|AEK67843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|340761315|gb|AEK67844.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761317|gb|AEK67845.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|340761319|gb|AEK67846.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|340761321|gb|AEK67847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|340761323|gb|AEK67848.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|340761325|gb|AEK67849.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|340761327|gb|AEK67850.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|340761329|gb|AEK67851.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|340761333|gb|AEK67853.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|340761335|gb|AEK67854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|340761337|gb|AEK67855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|340761339|gb|AEK67856.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|340761341|gb|AEK67857.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|340761343|gb|AEK67858.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|340761345|gb|AEK67859.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|340761347|gb|AEK67860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|340761349|gb|AEK67861.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|340761351|gb|AEK67862.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|340761353|gb|AEK67863.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|340761355|gb|AEK67864.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|340761357|gb|AEK67865.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|340761359|gb|AEK67866.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|340761361|gb|AEK67867.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|340761363|gb|AEK67868.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|340761365|gb|AEK67869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|340761367|gb|AEK67870.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|340761371|gb|AEK67872.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|353577103|gb|EHC39371.1| TolB protein [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|353577623|gb|EHC39729.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353597724|gb|EHC54353.1| TolB protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353616935|gb|EHC68057.1| TolB protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353626558|gb|EHC75069.1| TolB protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353668618|gb|EHD05765.1| TolB protein [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|357206494|gb|AET54540.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357959449|gb|EHJ83668.1| TolB protein [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|363551017|gb|EHL35340.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363551658|gb|EHL35973.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363553285|gb|EHL37537.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363560720|gb|EHL44854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363561350|gb|EHL45472.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363574547|gb|EHL58415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363579778|gb|EHL63551.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366057868|gb|EHN22168.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366081908|gb|EHN45847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366085376|gb|EHN49261.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|383797706|gb|AFH44788.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392613113|gb|EIW95576.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392619888|gb|EIX02265.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733188|gb|EIZ90391.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392733194|gb|EIZ90396.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392742837|gb|EIZ99917.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392744996|gb|EJA02035.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392750911|gb|EJA07869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392751973|gb|EJA08919.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392757730|gb|EJA14614.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392764311|gb|EJA21112.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392769195|gb|EJA25935.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392777169|gb|EJA33855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392777291|gb|EJA33975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392780076|gb|EJA36734.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392797034|gb|EJA53359.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392797921|gb|EJA54218.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392809060|gb|EJA65101.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392812257|gb|EJA68250.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392814344|gb|EJA70297.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392816484|gb|EJA72411.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824637|gb|EJA80409.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392826468|gb|EJA82194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392827868|gb|EJA83567.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392838981|gb|EJA94527.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNNG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|16764118|ref|NP_459733.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56414135|ref|YP_151210.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197363057|ref|YP_002142694.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205352012|ref|YP_002225813.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856192|ref|YP_002242843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378444232|ref|YP_005231864.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378449111|ref|YP_005236470.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698691|ref|YP_005180648.1| tolB protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378988138|ref|YP_005251302.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|409249191|ref|YP_006885026.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416648756|ref|ZP_11809401.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|418491338|ref|ZP_13057860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496781|ref|ZP_13063212.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498353|ref|ZP_13064768.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418504650|ref|ZP_13071006.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418525867|ref|ZP_13091847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418819094|ref|ZP_13374555.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823446|ref|ZP_13378854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|419727901|ref|ZP_14254869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734203|ref|ZP_14261098.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419740917|ref|ZP_14267633.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743855|ref|ZP_14270517.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419749840|ref|ZP_14276314.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421359206|ref|ZP_15809502.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361273|ref|ZP_15811537.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421368332|ref|ZP_15818523.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421372153|ref|ZP_15822302.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374692|ref|ZP_15824815.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382992|ref|ZP_15833036.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385785|ref|ZP_15835801.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391338|ref|ZP_15841307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396501|ref|ZP_15846427.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400205|ref|ZP_15850095.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421401679|ref|ZP_15851547.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421409329|ref|ZP_15859123.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421411820|ref|ZP_15861583.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421415318|ref|ZP_15865045.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421424158|ref|ZP_15873809.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427370|ref|ZP_15876992.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421430259|ref|ZP_15879853.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421433296|ref|ZP_15882860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421439460|ref|ZP_15888951.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442583|ref|ZP_15892032.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421572133|ref|ZP_16017793.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421577158|ref|ZP_16022746.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421581748|ref|ZP_16027289.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421585222|ref|ZP_16030721.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422024882|ref|ZP_16371356.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422029921|ref|ZP_16376165.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427546810|ref|ZP_18926677.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427562906|ref|ZP_18931437.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427581923|ref|ZP_18936262.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427603794|ref|ZP_18941036.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427628564|ref|ZP_18945946.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427651775|ref|ZP_18950701.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427660140|ref|ZP_18955664.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427665251|ref|ZP_18960408.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|436626231|ref|ZP_20515091.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436793580|ref|ZP_20521757.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810879|ref|ZP_20529917.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813375|ref|ZP_20531563.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436843854|ref|ZP_20537823.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436853799|ref|ZP_20543550.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436856473|ref|ZP_20545578.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436865848|ref|ZP_20551772.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871935|ref|ZP_20555109.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436875993|ref|ZP_20557593.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889023|ref|ZP_20565024.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436896989|ref|ZP_20569688.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436904258|ref|ZP_20574275.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436910266|ref|ZP_20576851.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436918518|ref|ZP_20581689.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436930982|ref|ZP_20589131.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436933342|ref|ZP_20589637.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436939310|ref|ZP_20593644.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436954370|ref|ZP_20601918.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959945|ref|ZP_20604142.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436967048|ref|ZP_20607211.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436976317|ref|ZP_20611762.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436992498|ref|ZP_20618003.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437011084|ref|ZP_20624365.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437014644|ref|ZP_20625619.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437035837|ref|ZP_20633763.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437038544|ref|ZP_20634345.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437051706|ref|ZP_20641526.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437059599|ref|ZP_20646084.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437062975|ref|ZP_20647739.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437078646|ref|ZP_20656140.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437079604|ref|ZP_20656668.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089693|ref|ZP_20662265.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437108316|ref|ZP_20667525.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437125318|ref|ZP_20673929.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437131387|ref|ZP_20677330.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437139959|ref|ZP_20682194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437143233|ref|ZP_20684201.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437150657|ref|ZP_20688809.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161913|ref|ZP_20695754.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437173060|ref|ZP_20701583.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437175170|ref|ZP_20702633.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437188590|ref|ZP_20710463.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437238655|ref|ZP_20714195.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437264144|ref|ZP_20719776.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437270487|ref|ZP_20723283.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281202|ref|ZP_20728395.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437300968|ref|ZP_20733174.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437306733|ref|ZP_20734375.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437325948|ref|ZP_20740090.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437345858|ref|ZP_20746741.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437370750|ref|ZP_20749281.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437421584|ref|ZP_20754873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437454150|ref|ZP_20759994.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437469728|ref|ZP_20764743.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437485554|ref|ZP_20769666.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437496093|ref|ZP_20773153.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437507887|ref|ZP_20776168.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437523517|ref|ZP_20779324.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437564740|ref|ZP_20787002.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437570205|ref|ZP_20788240.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437589257|ref|ZP_20794129.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599380|ref|ZP_20796858.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437618043|ref|ZP_20803024.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437630852|ref|ZP_20806278.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437661843|ref|ZP_20813207.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437674442|ref|ZP_20816523.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697737|ref|ZP_20823017.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437709742|ref|ZP_20826230.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736107|ref|ZP_20832528.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437752082|ref|ZP_20833946.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437812757|ref|ZP_20841611.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437825219|ref|ZP_20843806.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437949398|ref|ZP_20851924.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437994693|ref|ZP_20853912.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438083751|ref|ZP_20858199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438097025|ref|ZP_20862203.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438106743|ref|ZP_20866582.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438140533|ref|ZP_20874955.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440764086|ref|ZP_20943118.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440767324|ref|ZP_20946305.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440773333|ref|ZP_20952230.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445134326|ref|ZP_21382908.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445139995|ref|ZP_21384647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445152802|ref|ZP_21390994.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445172032|ref|ZP_21396307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445216002|ref|ZP_21402002.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445222157|ref|ZP_21403247.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445325252|ref|ZP_21412508.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445348788|ref|ZP_21419745.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445366862|ref|ZP_21425492.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452121034|ref|YP_007471282.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|32699711|sp|Q8ZQT5.1|TOLB_SALTY RecName: Full=Protein TolB; Flags: Precursor
gi|67461910|sp|Q5PCN2.1|TOLB_SALPA RecName: Full=Protein TolB; Flags: Precursor
gi|226705890|sp|B5QX24.1|TOLB_SALEP RecName: Full=Protein TolB; Flags: Precursor
gi|226705891|sp|B5R699.1|TOLB_SALG2 RecName: Full=Protein TolB; Flags: Precursor
gi|226705892|sp|B5BC62.1|TOLB_SALPK RecName: Full=Protein TolB; Flags: Precursor
gi|16419258|gb|AAL19692.1| tol protein required for outer membrane integrity [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|56128392|gb|AAV77898.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197094534|emb|CAR60054.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205271793|emb|CAR36627.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206707995|emb|CAR32284.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261246011|emb|CBG23813.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992489|gb|ACY87374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157339|emb|CBW16828.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|320085019|emb|CBY94808.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|332987685|gb|AEF06668.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|366056513|gb|EHN20831.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062440|gb|EHN26672.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366070647|gb|EHN34755.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366074130|gb|EHN38194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366829750|gb|EHN56626.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206636|gb|EHP20140.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|381293439|gb|EIC34599.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381299390|gb|EIC40464.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381301483|gb|EIC42539.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381309275|gb|EIC50113.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311165|gb|EIC51989.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|392784242|gb|EJA40849.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392785719|gb|EJA42286.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|395984919|gb|EJH94093.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395985654|gb|EJH94821.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993276|gb|EJI02371.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395996443|gb|EJI05489.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|395999803|gb|EJI08818.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396007506|gb|EJI16459.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396009537|gb|EJI18467.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396011931|gb|EJI20832.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396015268|gb|EJI24150.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396024239|gb|EJI33026.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396025395|gb|EJI34172.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396034369|gb|EJI43068.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396036206|gb|EJI44877.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396044068|gb|EJI52665.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047902|gb|EJI56469.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396051904|gb|EJI60415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396057576|gb|EJI66048.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063008|gb|EJI71417.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396071666|gb|EJI79991.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396073342|gb|EJI81647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|402515185|gb|EJW22599.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402515746|gb|EJW23159.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402518514|gb|EJW25894.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402530119|gb|EJW37341.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414022829|gb|EKT06291.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414022919|gb|EKT06371.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414024458|gb|EKT07835.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414036648|gb|EKT19463.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414037723|gb|EKT20477.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414041298|gb|EKT23873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414051179|gb|EKT33303.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414052391|gb|EKT34435.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414056629|gb|EKT38437.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414061310|gb|EKT42731.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|434939858|gb|ELL46602.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962481|gb|ELL55675.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434963366|gb|ELL56479.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965371|gb|ELL58334.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434974883|gb|ELL67193.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434979681|gb|ELL71659.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434983666|gb|ELL75457.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434991906|gb|ELL83394.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994595|gb|ELL85936.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001150|gb|ELL92272.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435008883|gb|ELL99693.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435011198|gb|ELM01920.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435014521|gb|ELM05086.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435016780|gb|ELM07288.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435028639|gb|ELM18718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031250|gb|ELM21239.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435031596|gb|ELM21559.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435043863|gb|ELM33569.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047446|gb|ELM37033.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435048587|gb|ELM38151.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435054610|gb|ELM44045.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435061918|gb|ELM51121.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435066044|gb|ELM55144.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435066770|gb|ELM55843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435072394|gb|ELM61319.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435075204|gb|ELM64027.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435084764|gb|ELM73332.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435087776|gb|ELM76255.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435091740|gb|ELM80115.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435092336|gb|ELM80697.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435101002|gb|ELM89156.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435103508|gb|ELM91593.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435114500|gb|ELN02301.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435114711|gb|ELN02501.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435118309|gb|ELN05975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435119467|gb|ELN07071.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435124051|gb|ELN11526.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435130500|gb|ELN17736.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435140809|gb|ELN27754.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435143719|gb|ELN30574.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144137|gb|ELN30991.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435145391|gb|ELN32206.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435155641|gb|ELN42172.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435156828|gb|ELN43295.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435160224|gb|ELN46513.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435169453|gb|ELN55232.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435171218|gb|ELN56861.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435178423|gb|ELN63637.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435183569|gb|ELN68536.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435186721|gb|ELN71534.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435189550|gb|ELN74175.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435192960|gb|ELN77468.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435200400|gb|ELN84385.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206590|gb|ELN90098.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435207939|gb|ELN91370.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435214613|gb|ELN97361.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435216729|gb|ELN99204.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435226341|gb|ELO07920.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435233519|gb|ELO14516.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435236320|gb|ELO17063.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435249495|gb|ELO29316.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435249531|gb|ELO29349.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435257269|gb|ELO36562.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435259565|gb|ELO38785.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435263450|gb|ELO42500.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435267998|gb|ELO46630.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435275839|gb|ELO53885.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435278531|gb|ELO56366.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435283832|gb|ELO61353.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435285598|gb|ELO62981.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435289443|gb|ELO66404.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435297361|gb|ELO73647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435305603|gb|ELO81057.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435306937|gb|ELO82161.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435311520|gb|ELO85652.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435319805|gb|ELO92581.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435327171|gb|ELO98938.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435333771|gb|ELP04530.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336437|gb|ELP06369.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436416291|gb|ELP14199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436417536|gb|ELP15429.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436420687|gb|ELP18547.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|444846815|gb|ELX71968.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444852696|gb|ELX77771.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444853634|gb|ELX78703.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444858771|gb|ELX83746.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444860817|gb|ELX85721.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444869924|gb|ELX94483.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444875964|gb|ELY00156.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444881715|gb|ELY05733.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444882530|gb|ELY06484.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|451910038|gb|AGF81844.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|196233271|ref|ZP_03132117.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
gi|196222742|gb|EDY17266.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
Length = 564
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 90/195 (46%), Gaps = 23/195 (11%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y+ ++DGSN RQ+ S P +VYT +S D+ I++
Sbjct: 146 IYLADADGSNVRQLTNDANISVGPRLSPDGSHLVYT------GYKSGYADVYEIDL---- 195
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G A R+ N + SP+G+ + ++ G LY A GG G HRLT P
Sbjct: 196 GSGARNRIIKFPGTNTGAAYSPNGRELAVILSKDGNPELYTTSAGGG---GAHRLTHTPG 252
Query: 559 SDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
++ WSP G+ I ++SD R P ++Y I G G +LI +G G P +SP
Sbjct: 253 VESSPTWSPSGDEIIYSSDDRGGP-----QLYRISSGG-GSGRLISTGH-GYNTEPNWSP 305
Query: 618 DGKSIVFTSDYGGIS 632
DGK + FT GG +
Sbjct: 306 DGKKVAFTVRDGGFT 320
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG S VR+LT + + P +SPDG +V+ ++GY ++Y +D G +
Sbjct: 146 IYLADADG-SNVRQLTNDANISVGPRLSPDGSHLVYTGYKSGYADVYEIDLGSGA---RN 201
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
R+ + P ++T +SP+G +A +D G+ E+Y G G +L + G +
Sbjct: 202 RIIKFPGTNTGAAYSPNGRELAVILSKD----GNPELYTTSAGGGGAHRLTH--TPGVES 255
Query: 612 HPYFSPDGKSIVFTSD-----------YGGISAEPISTPHQYQ 643
P +SP G I+++SD GG S IST H Y
Sbjct: 256 SPTWSPSGDEIIYSSDDRGGPQLYRISSGGGSGRLISTGHGYN 298
>gi|16759687|ref|NP_455304.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29142540|ref|NP_805882.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|32699709|sp|Q8Z8C0.1|TOLB_SALTI RecName: Full=Protein TolB; Flags: Precursor
gi|25513116|pir||AH0592 tolB protein precursor [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16501980|emb|CAD05210.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29138171|gb|AAO69742.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|83772135|dbj|BAE62265.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 437
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 127/298 (42%), Gaps = 58/298 (19%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY----------------F 456
+RF FP+ + G R+A + V +N+ G++ V+
Sbjct: 155 YRFTDVFPTINTAG-RLAITQKQLGDSAVISLNATGTDNETVFDPVARGILSLSSVEQGT 213
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------- 508
AF + W + Y G FA +S I + DG A+ T+
Sbjct: 214 SGAFQSSWSSDGNWLTYGVG-YWFAGRASNGGWIVCS--KADGSEAMNLTTSAIPLSAGG 270
Query: 509 -NGKNNAFPSVSPDGKWIVFR----------STRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
N N FPS PDG IVFR +++ G + L++ Y + LT
Sbjct: 271 NNTLNTGFPSFLPDGTKIVFRVWGADAEDGDTSQLGLRILHLDQVTANGTYPVTVLTN-- 328
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
W DT+ ++SPDG I F R GS ++E+ I P+G+ L+ L S AN
Sbjct: 329 WWDTLPSFSPDGTKIVFT--RRVSGS-NYEVCTIAPDGSDLQVLTSS----EAN------ 375
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
D +I++++ G +E + +QPYG+I + DG + + LT + +ED PA+ P
Sbjct: 376 DAHAIMYSTGEYGFQSECALYDNTFQPYGQINIMDADGGNKRALTNSLWEDSMPAYVP 433
>gi|383767896|ref|YP_005446879.1| hypothetical protein PSMK_28230 [Phycisphaera mikurensis NBRC
102666]
gi|381388166|dbj|BAM04982.1| hypothetical protein PSMK_28230 [Phycisphaera mikurensis NBRC
102666]
Length = 478
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 50/220 (22%)
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG--------EGYGL 550
G ++V +LT + N+ P+VSPDG+ I F S R+G +LY+MDA GG +G+ +
Sbjct: 186 GGTSVTQLTDDPANDVMPAVSPDGRRIAFASDRSGTWDLYLMDAGGGRAVKLTDDDGHNV 245
Query: 551 H--------RLT-------EGPWSDTMCN-----------------WSPDGEWIAFASDR 578
H RL G W + + WSP + IAF R
Sbjct: 246 HPSFSPDGQRLVYSSFSPHAGGWELVVIDVDRPTKKRIIGRGLFPVWSPADDTIAFQRAR 305
Query: 579 DNPGSGSFEMYLIH-PNGTGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
+ GS F ++ + +G +R + S P +SPDG+S+VF + +P
Sbjct: 306 ER-GSRWFSVWTVQLEDGEAVRPTEVAVSSNAAVITPRWSPDGESLVFCTVLDPAGEDPT 364
Query: 637 STPHQYQP-YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
QP +++ I+ DGS +LT + P+WGP
Sbjct: 365 ------QPTRADVWTIRRDGSGRSKLTTGDAANLQPSWGP 398
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 501 SAVRRLTTNGKNNAFP-SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+ + R+T+ + + F + +PDG+ + F STR ++ + + G + +LT+ P +
Sbjct: 142 AGLSRITSTTEGDDFDVAPAPDGETLYFASTR--HRPTADLYRQAIGGTSVTQLTDDPAN 199
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
D M SPDG IAFASDR SG++++YL+ G KL G HP FSPDG
Sbjct: 200 DVMPAVSPDGRRIAFASDR----SGTWDLYLMDAGGGRAVKLTDDD--GHNVHPSFSPDG 253
Query: 620 KSIVFTS 626
+ +V++S
Sbjct: 254 QRLVYSS 260
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 38/262 (14%)
Query: 344 SSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401
+S RH DL + +T+ + + P +SPD R+ + R G+
Sbjct: 170 ASTRHRPTADLYRQAIGGTSVTQLTDDPANDVMPAVSPDGRRIAFASDRSGTW------D 223
Query: 402 LLLENIKSPLPDISLFRFDGS--FPSFSPKGDRIAFVEFPG------VYVVNSDGSNRRQ 453
L L + + L DG PSFSP G R+ + F + V++ D +++
Sbjct: 224 LYLMDAGGGR-AVKLTDDDGHNVHPSFSPDGQRLVYSSFSPHAGGWELVVIDVDRPTKKR 282
Query: 454 VYFKNAFSTVWDPVREAVVYTSGGPEFASE--SSEVDIISINVDDVDGVSAVRRLTTNGK 511
+ + F VW P + + + + A E S + ++ ++D + V ++
Sbjct: 283 IIGRGLFP-VWSPADDTIAF-----QRARERGSRWFSVWTVQLEDGEAVRPTEVAVSSNA 336
Query: 512 NNAFPSVSPDGKWIVFRS---------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
P SPDG+ +VF + T+ +++ + +G G +LT G ++
Sbjct: 337 AVITPRWSPDGESLVFCTVLDPAGEDPTQPTRADVWTIRRDG---SGRSKLTTGDAANLQ 393
Query: 563 CNWSPDGEWIAFASDRDNPGSG 584
+W PDG + F SDR + +G
Sbjct: 394 PSWGPDGR-VYFISDRGSAPAG 414
>gi|402567481|ref|YP_006616826.1| TolB protein [Burkholderia cepacia GG4]
gi|402248678|gb|AFQ49132.1| TolB protein [Burkholderia cepacia GG4]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PSWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYIVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S S I ++N +RRLT +G + P SPDG+WI F S R G +
Sbjct: 258 ---LSLSGNTQIYTVNSTG----GGLRRLTQSGSIDTEPFYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGSAQRVTFTGNYNTSPRISPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +QSG+A R P F+ +G+ +++ + GG
Sbjct: 360 --QDLQSGAANAITNTNRDESPSFAANGQYLLYATQSGG 396
>gi|213051767|ref|ZP_03344645.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213427709|ref|ZP_03360459.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213857527|ref|ZP_03384498.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289827213|ref|ZP_06545933.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378960291|ref|YP_005217777.1| hypothetical protein STBHUCCB_22510 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|374354163|gb|AEZ45924.1| hypothetical protein STBHUCCB_22510 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNNG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|423139204|ref|ZP_17126842.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|379051758|gb|EHY69649.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNNG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|375000501|ref|ZP_09724841.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|375118207|ref|ZP_09763374.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375122803|ref|ZP_09767967.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|383495536|ref|YP_005396225.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|417516913|ref|ZP_12179703.1| TolB protein precursor [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|326622474|gb|EGE28819.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326627053|gb|EGE33396.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|353075189|gb|EHB40949.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353653046|gb|EHC94691.1| TolB protein precursor [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|380462357|gb|AFD57760.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 434
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 170 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 225
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 226 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 279
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 280 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 332
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 333 WEGSQNQDAD--VSSDGKFMVMVSSNNG 358
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 207 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 260
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 261 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 314
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 315 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 370
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 371 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 420
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 421 TDGQVKSPAWSP 432
>gi|170717585|ref|YP_001783488.1| translocation protein TolB [Haemophilus somnus 2336]
gi|189035983|sp|B0UVJ6.1|TOLB_HAES2 RecName: Full=Protein TolB; Flags: Precursor
gi|168825714|gb|ACA31085.1| Tol-Pal system beta propeller repeat TolB [Haemophilus somnus 2336]
Length = 434
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
V + + DG N+ VY + S W P + Y S F + S++ + +
Sbjct: 189 VRIADYDGHNQFIVYSSSQPLMSPAWSPDGSKLAYVS----FENRKSQLIVHDLQ----- 239
Query: 499 GVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
S RR+ G N A P+ SPDG I F S++ G N+Y+M+ G + +LT G
Sbjct: 240 --SGARRVIAAFPGHNGA-PAFSPDGSKIAFASSKDGVLNIYVMNLGNGT---ISQLTSG 293
Query: 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
++T +WSPDG+ I F SDR +G ++Y + G G+ + SAGR S
Sbjct: 294 AGNNTEPSWSPDGQSIIFTSDR----AGGPQIYQMDVVGNGVSLV----SAGRGYSGKIS 345
Query: 617 PDGKSIVF 624
DG +V
Sbjct: 346 ADGSILVM 353
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P+ SPDG + + S L + D + G + P + +SPDG IAFA
Sbjct: 212 PAWSPDGSKLAYVSFENRKSQLIVHDLQSG---ARRVIAAFPGHNGAPAFSPDGSKIAFA 268
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
S +D G +Y+++ G G + SG AG P +SPDG+SI+FTSD G
Sbjct: 269 SSKD----GVLNIYVMNL-GNGTISQLTSG-AGNNTEPSWSPDGQSIIFTSDRAG 317
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 60/287 (20%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG+NQ ++ + PL P++SP G ++A+V F NR+
Sbjct: 195 DGHNQFIVYSSSQPLMS----------PAWSPDGSKLAYVSF----------ENRKSQLI 234
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEV-------DIISINVDDVDGVSAVRRLTTN 509
+ + V A +G P F+ + S++ +++I V ++ G + +LT+
Sbjct: 235 VHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKDGVLNIYVMNL-GNGTISQLTSG 293
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
NN PS SPDG+ I+F S R G +Y MD G G L G +S + S DG
Sbjct: 294 AGNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVV-GNGVSLVSAGRG-YSGKI---SADG 348
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
+ DN + TG+ +++ S + P SP+G I+++S G
Sbjct: 349 SILVMIYG-DN--------IVKKDLATGVTEMLSSTFLDES--PSISPNGIMIIYSSTQG 397
Query: 630 GISAEPISTPHQYQPYGEIFK-IKLDGSDLKRLTQNSFEDGTPAWGP 675
G++ + + DG RL + + PAW P
Sbjct: 398 ---------------LGKVLQLVSADGRFKARLPSSDGQIKFPAWSP 429
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 40/206 (19%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y + E+ +QL++ +++S I+ F P+FSP G
Sbjct: 210 MSPAWSPDGSKLAY------VSFENRKSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGS 263
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEF-- 480
+IAF +YV+N Q+ +T W P +++++TS GGP+
Sbjct: 264 KIAFASSKDGVLNIYVMNLGNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQIYQ 323
Query: 481 ----------------------ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A S V I N+ D + V + ++ + PS+
Sbjct: 324 MDVVGNGVSLVSAGRGYSGKISADGSILVMIYGDNIVKKDLATGVTEMLSSTFLDESPSI 383
Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEG 544
SP+G I++ ST+ K L ++ A+G
Sbjct: 384 SPNGIMIIYSSTQGLGKVLQLVSADG 409
>gi|416594815|ref|ZP_11780629.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416608578|ref|ZP_11789470.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615047|ref|ZP_11793199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322670511|gb|EFY66644.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322679677|gb|EFY75718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684847|gb|EFY80846.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|340761331|gb|AEK67852.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|340761369|gb|AEK67871.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|340761373|gb|AEK67873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSNNG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKSPAWSP 429
>gi|326316638|ref|YP_004234310.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373474|gb|ADX45743.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 439
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 111/280 (39%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V +SDG N + + S W P G + A S
Sbjct: 176 RIAYVTKAGSRYSLWVADSDGENAQSALSSPEPIISPAWSP---------SGTQLAYVSF 226
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV + RRL N + +N+ P+ SPDG+ + +R G LY +DA G
Sbjct: 227 ESRKPVVYVHDVS--TGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANG 284
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR G+ ++Y + G ++ +
Sbjct: 285 GE---PRRLMQSSGIDTEPTYSSDGRSIYFVSDR----GGAPQIYRVPATGGSAERVTFT 337
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGI-----------------------------SAEP 635
G+ + P SPDGK + + S GG + +
Sbjct: 338 GAYNIS--PSISPDGKWLAYISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGKL 395
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I Q Q + LDG RL S + P WGP
Sbjct: 396 IVYATQQQGREALMTTTLDGKIKARLAGQSGDIREPDWGP 435
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 52/222 (23%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
D + + + SP P IS P++SP G ++A+V F P VYV + RR
Sbjct: 193 DSDGENAQSALSSPEPIIS--------PAWSPSGTQLAYVSFESRKPVVYVHDVSTGRRR 244
Query: 453 QVY-FKNAFST-VWDPVREAVVYT---------------SGGPEFASESSEVDI------ 489
+ F+ + S W P + T G P +SS +D
Sbjct: 245 LIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSS 304
Query: 490 --ISIN-VDDVDGV----------SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
SI V D G + R+T G N PS+SPDGKW+ + S G
Sbjct: 305 DGRSIYFVSDRGGAPQIYRVPATGGSAERVTFTGAYNISPSISPDGKWLAYISRVGGAFK 364
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
L++MD G + T +D +++P+G+ I +A+ +
Sbjct: 365 LHVMDLTSGSVTAITDTT----ADESPSFAPNGKLIVYATQQ 402
>gi|238790498|ref|ZP_04634267.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC
33641]
gi|238721442|gb|EEQ13113.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC
33641]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFPG-VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ A+R++ + ++N P+ SPDG + F +++G NLY+MD
Sbjct: 222 GKSALVIQTL------ANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ G ++Y ++ NG +++
Sbjct: 276 GSGQ---ISQVTDGRSNNTEPSWFPDSQNLAYTSDQ----GGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + + SPDGK + S GG
Sbjct: 329 WEGS--QNQNADVSPDGKFLALVSSNGG 354
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKIAY------VTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ QV + +T W P + + YTS +
Sbjct: 257 KLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VSPDGK++ S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQNADVSPDGKFLALVSSNGGAQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSTQ---GLGAV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|417595667|ref|ZP_12246330.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3030-1]
gi|345359987|gb|EGW92160.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3030-1]
Length = 430
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGSVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGSVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|161504090|ref|YP_001571202.1| translocation protein TolB [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160865437|gb|ABX22060.1| hypothetical protein SARI_02188 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 434
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 170 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 225
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 226 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 279
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 280 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 332
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 333 WEGSQNQDAD--VSSDGKFMVMVSSNNG 358
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 207 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 260
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 261 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 314
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 315 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 370
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 371 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 420
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 421 TDGQVKSPAWSP 432
>gi|124385902|ref|YP_001028613.1| translocation protein TolB [Burkholderia mallei NCTC 10229]
gi|254207691|ref|ZP_04914041.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei JHU]
gi|147751585|gb|EDK58652.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
mallei JHU]
Length = 431
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 94 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 154 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 206 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 258
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 259 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 314
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 315 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 361
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ GG S
Sbjct: 362 LQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRS 398
>gi|305665004|ref|YP_003861291.1| protease [Maribacter sp. HTCC2170]
gi|88707416|gb|EAQ99661.1| protease, putative [Maribacter sp. HTCC2170]
Length = 1081
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 125/518 (24%), Positives = 202/518 (38%), Gaps = 117/518 (22%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
+++ L GL +LT + + PA+SP GK A ++ ++G E+ S I
Sbjct: 52 IWTVPLSGGLAYKLTTHAEEERYPAISPDGKMIAFSA----SYEGPTEIYSMPI------ 101
Query: 258 DGTQRVKIVENGGWPC-WVDESTLFFHRKSEEDDWISVYKVI--------LPQTGLVSTE 308
+GG P W ES S + W K++ LP LV+ +
Sbjct: 102 ----------DGGLPIRWTYESDF-----SRTNGWTPDGKIVYDTRAFATLPDRQLVTID 146
Query: 309 SVSIQRVTPPGLHAFTPA-TSPGNNKFIA-------VATRRPTSSYRHIELFDLVKNKFI 360
+ ++V P A + + GN F V R + R I F + I
Sbjct: 147 IKTKKKVRVPLSQASEASFDASGNTVFFVRPSDHGNVTKRYKGGTARQIWKFTNESTEAI 206
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG-----STREDGNNQLLLENIKSPLPDIS 415
+LT+ + ++HH F ++RV + R G S E+GN+ L ++ D+
Sbjct: 207 QLTKGYAGESHHPMWF----NARVYFITDRDGIMNIWSIDENGND--LKQHTDHTDFDVR 260
Query: 416 LFRFDGSFPSFSPKGD-------------------------RIAFVEFPGVYV--VNSDG 448
+ D R +VE P Y+ VN D
Sbjct: 261 YANLHKGNIVYQIGADIWHYNIQNNNKKKINIKLTSDLDQLREKWVENPSKYITSVNPDK 320
Query: 449 SNRRQVYFKNAFSTVWDPVREA---------------VVYTSGGPE---FASESSEVDII 490
R V + V PV+ V++S G + + ES E + +
Sbjct: 321 KGERIVITARGRAFV-APVKSGRLVEFTDKKNVRFRDAVFSSDGKKVYTLSDESGEFEFV 379
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSV-SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
S+ +GV + +T NGK + SPDGKW+ + N+++++ G
Sbjct: 380 SM---PSNGVGSHEAITNNGKVLRYAGKPSPDGKWLAYDDL---MGNMFVLNIATGSSKK 433
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ EG +S +WSPD +WIAF DN + ++YL + +G I + A
Sbjct: 434 ISTKEEGIYS---FSWSPDSKWIAFVQVADNTMA---QIYL-YGLSSGASFPITTDRAN- 485
Query: 610 ANHPYFSPDGKSIVFTSD--YGGISAEPISTPHQYQPY 645
+N+P +SPDGK I F SD + + P P Q +PY
Sbjct: 486 SNYPAWSPDGKFIYFLSDRNFTTLVGSPWG-PRQPEPY 522
>gi|160898835|ref|YP_001564417.1| translocation protein TolB [Delftia acidovorans SPH-1]
gi|160364419|gb|ABX36032.1| Tol-Pal system beta propeller repeat protein TolB [Delftia
acidovorans SPH-1]
Length = 441
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P + Y S F S
Sbjct: 178 RIAYVTKAGSNYRLWVADADGENAQSALSSPEPIISPAWSPTGTQLAYVS----FESRKP 233
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V V DV S RRL N + +N+ P+ SPDG + +R G LY++ A+G
Sbjct: 234 VV-----YVHDV--ASGRRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQG 286
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT N+S DG I F SDR G+ ++Y + +G ++ +
Sbjct: 287 GE---PRRLMQSSGIDTEPNFSSDGRSIYFVSDR----GGAPQIYKVPASGGSAERVTFT 339
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + P SPDGK + + S GG
Sbjct: 340 GNYNIS--PSVSPDGKWLAYVSRVGG 363
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG +A L++ + P+ SP G + + S + +Y+ D G RL
Sbjct: 193 VADADGENAQSALSSP-EPIISPAWSPTGTQLAYVSFESRKPVVYVHDVASGR----RRL 247
Query: 554 TEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
S++ WSPDG +A RD G ++YLI G R+L+QS +G
Sbjct: 248 VANFRGSNSAPAWSPDGNSLAVTLSRD----GGSQLYLISAQGGEPRRLMQS--SGIDTE 301
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
P FS DG+SI F SD GG +I+K+ G +R+T
Sbjct: 302 PNFSSDGRSIYFVSDRGGAP--------------QIYKVPASGGSAERVT 337
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 97/240 (40%), Gaps = 57/240 (23%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G + R D + + + SP P IS P++SP G ++A+V
Sbjct: 176 STRIAYVTKAGSNYRLWVADADGENAQSALSSPEPIIS--------PAWSPTGTQLAYVS 227
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDPVREAVVYT--------------SGG 477
F P VYV + RR V F+ + S W P ++ T GG
Sbjct: 228 FESRKPVVYVHDVASGRRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGG 287
Query: 478 --------------PEFASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFP 516
P F+S+ + +S I G SA R+T G N P
Sbjct: 288 EPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGGAPQIYKVPASGGSA-ERVTFTGNYNISP 346
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
SVSPDGKW+ + S G L++MD G + T +D +++P+ I +A+
Sbjct: 347 SVSPDGKWLAYVSRVGGGFKLHVMDLGTGTVNAITDTT----ADESPSFAPNSRLIVYAT 402
>gi|420087587|ref|ZP_14599545.1| translocation protein TolB, partial [Escherichia coli O111:H8 str.
CVM9602]
gi|394392778|gb|EJE69516.1| translocation protein TolB, partial [Escherichia coli O111:H8 str.
CVM9602]
Length = 237
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
AVR++ + ++N P+ SPDG + F ++TG NLY+MD G+ + ++T+G ++T
Sbjct: 42 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 98
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +AF SD+ +G ++Y ++ NG +++ GS + S DGK
Sbjct: 99 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 152
Query: 622 IVFTSDYGG 630
+V S GG
Sbjct: 153 MVMVSSNGG 161
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 10 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 63
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 64 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 117
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 118 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 173
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 174 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 223
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 224 TDGQVKFPAWSP 235
>gi|94970511|ref|YP_592559.1| Xaa-Pro aminopeptidase-like protein [Candidatus Koribacter
versatilis Ellin345]
gi|94552561|gb|ABF42485.1| WD40-like beta Propeller [Candidatus Koribacter versatilis
Ellin345]
Length = 367
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 38/213 (17%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREA--VVYTSGGPEFASESSEVDIISINVDDVD 498
+Y +DGS+ +Q+ + ++ R+ +V+TS + + ++DI ++ D D
Sbjct: 155 IYTAKADGSDLKQLTHEKGYNAEATITRDGKHIVFTS------TRNGDLDIYTM---DAD 205
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST--------------------RTGYKNLY 538
G S V++LT + P S DGK IV+R+ R G L+
Sbjct: 206 G-SHVKQLTHELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRPGNLELW 264
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG-SFEMYLIHPNGTG 597
+M+A+G H++T ++ W PDG+ I FAS++ +P +G F++Y+I+ +GTG
Sbjct: 265 VMNADGSNK---HQVTRNGAANFAPYWLPDGKRIIFASNQADPKNGRDFDLYIINEDGTG 321
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++ + P F+ DGK +V+ S+ G
Sbjct: 322 QERI--TFHPDFDGFPMFTSDGKRLVWASNRNG 352
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 34/210 (16%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I DG S +++LT NA +++ DGK IVF STR G ++Y MDA+G
Sbjct: 151 DTYQIYTAKADG-SDLKQLTHEKGYNAEATITRDGKHIVFTSTRNGDLDIYTMDADGSH- 208
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASD-----------RDNPGS-----GSFEMYLI 591
+ +LT D WS DG+ I + + RD G G+ E++++
Sbjct: 209 --VKQLTHELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRPGNLELWVM 266
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ ++ ++G+A A PY+ PDGK I+F S+ + P + + +++ I
Sbjct: 267 NADGSNKHQVTRNGAANFA--PYWLPDGKRIIFASNQ--------ADPKNGRDF-DLYII 315
Query: 652 KLDGSDLKRLTQNSFEDGTPAW---GPRFI 678
DG+ +R+T + DG P + G R +
Sbjct: 316 NEDGTGQERITFHPDFDGFPMFTSDGKRLV 345
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEV-DII------- 490
+Y +++DGS+ +Q+ + + W + +VY + P+ A E + D++
Sbjct: 199 IYTMDADGSHVKQLTHELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRP 258
Query: 491 ---SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN-----LYIMDA 542
+ V + DG S ++T NG N P PDGK I+F S + KN LYI++
Sbjct: 259 GNLELWVMNADG-SNKHQVTRNGAANFAPYWLPDGKRIIFASNQADPKNGRDFDLYIINE 317
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+G G R+T P D ++ DG+ + +AS+R+ ++L
Sbjct: 318 DGT---GQERITFHPDFDGFPMFTSDGKRLVWASNRNGKAPHETNVFL 362
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 85/221 (38%), Gaps = 52/221 (23%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY--KNLYIMDAEGGEGYGLHRL------- 553
VR+LT G+N A S D K+++F+ G +Y M+ + + L
Sbjct: 43 VRQLTFGGQN-AEAYFSADDKYLIFQHQGDGVPCDQIYTMEVDPVKANHATLLDLSLAPP 101
Query: 554 ---TEGPWSDTMCNWSPDGEWIAFASDRDN----------------PGSGSFEMYLIHPN 594
+ G T W P GE I F+S P ++++Y +
Sbjct: 102 KLVSTGKGRTTCSYWFPSGERILFSSTHAANAECPPKPDYSKGYVWPIYDTYQIYTAKAD 161
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ L++L G + DGK IVFTS G +I+ + D
Sbjct: 162 GSDLKQLTHE--KGYNAEATITRDGKHIVFTSTRNGDL--------------DIYTMDAD 205
Query: 655 GSDLKRLTQNSFEDGTPAW---GPRFI----RPVDVEEVKN 688
GS +K+LT DG P W G + + P + EE K+
Sbjct: 206 GSHVKQLTHELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKD 246
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 486 EVDIISINVDDVDGVS-AVRRLTTNGKNNAFPSV-SPDGKWIVFRSTRT----------- 532
EVD + N + +S A +L + GK S P G+ I+F ST
Sbjct: 82 EVDPVKANHATLLDLSLAPPKLVSTGKGRTTCSYWFPSGERILFSSTHAANAECPPKPDY 141
Query: 533 --GY----KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
GY + Y + +G L +LT + + DG+ I F S R+ G
Sbjct: 142 SKGYVWPIYDTYQIYTAKADGSDLKQLTHEKGYNAEATITRDGKHIVFTSTRN----GDL 197
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS----------DYGGISAEPI 636
++Y + +G+ +++L G P++S DGK IV+ + DY + + +
Sbjct: 198 DIYTMDADGSHVKQLTHE--LGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGL 255
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW---GPRFIRPVDVEEVKN 688
P E++ + DGS+ ++T+N + P W G R I + + KN
Sbjct: 256 IRPGNL----ELWVMNADGSNKHQVTRNGAANFAPYWLPDGKRIIFASNQADPKN 306
>gi|375105330|ref|ZP_09751591.1| tol-pal system beta propeller repeat protein TolB [Burkholderiales
bacterium JOSHI_001]
gi|374666061|gb|EHR70846.1| tol-pal system beta propeller repeat protein TolB [Burkholderiales
bacterium JOSHI_001]
Length = 431
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 113/281 (40%), Gaps = 58/281 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSGGPEFASES 484
RIA+V + V ++DG QV +A S W P ++ Y S
Sbjct: 169 RIAYVTKSANRFTLRVTDADGEGG-QVALASAQPIISPAWSPDGRSLAYVS--------- 218
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
E SI V DV S RR N + +N+ P+ SPDG + +R G LY++D +
Sbjct: 219 FEQGKASIYVQDV--ASGQRRAVANHRGSNSAPAWSPDGNQLAVALSRDGLTQLYLIDRQ 276
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G L R+T P DT +SPDG + F SDR G ++Y + G ++
Sbjct: 277 GER---LQRITNSPAIDTEPCFSPDGRTLYFVSDR----GGGPQIYRMPAGGGAAERVTF 329
Query: 604 SGSAGRANHPYFSPDGKSI-----------VFTSDYGGISAEPISTPH-----QYQPYGE 647
SG+ P SPDG+++ V T D G S + +S + P G+
Sbjct: 330 SGNYN--ISPAISPDGRTLAYVTRNGGAFKVMTLDLAGGSPQSVSDTSDDESPSFAPNGK 387
Query: 648 -------------IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ LDG RL + + P WGP
Sbjct: 388 LIIYATRSGGRDVLMTTTLDGRIKTRLLSSGVDVREPVWGP 428
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 33/214 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD + Y E G + ++++ S ++ R S P++SP G+
Sbjct: 203 ISPAWSPDGRSLAYVSF------EQGKASIYVQDVASGQRRAVANHRGSNSAPAWSPDGN 256
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++A +Y+++ G +++ A T + P + + S GGP+
Sbjct: 257 QLAVALSRDGLTQLYLIDRQGERLQRITNSPAIDTEPCFSPDGRTLYFVSDRGGGPQIYR 316
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ G A R+T +G N P++SPDG+ + + + G + +D
Sbjct: 317 MPA-------------GGGAAERVTFSGNYNISPAISPDGRTLAYVTRNGGAFKVMTLDL 363
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
GG + ++ D +++P+G+ I +A+
Sbjct: 364 AGGSPQSVSDTSD----DESPSFAPNGKLIIYAT 393
>gi|375131385|ref|YP_004993485.1| translocation protein TolB precursor [Vibrio furnissii NCTC 11218]
gi|315180559|gb|ADT87473.1| translocation protein TolB precursor [Vibrio furnissii NCTC 11218]
Length = 439
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDGK + + S + G +YIM+ GE
Sbjct: 191 LRVADYDGYN--ERLVLRSKQPLMSPAWSPDGKKLAYVSFQNGQAEIYIMNIYTGE---R 245
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG+ +A + +GS ++Y + RKL Q ++GR+
Sbjct: 246 EKVTSYPRHNGAPRFSPDGKTLALVLSK----TGSLQVYTLDLTS---RKLTQI-TSGRS 297
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P+++PDGKS++FTSD GG +P +I+++ L KRLT
Sbjct: 298 NNTEPFWNPDGKSLIFTSDRGG------------KP--QIYQVNLTDGATKRLT 337
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 39/221 (17%)
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSF 426
K ++P SPD ++ Y ++G ++ + NI + + S R +G+ P F
Sbjct: 208 KQPLMSPAWSPDGKKLAYVSF------QNGQAEIYIMNIYTGEREKVTSYPRHNGA-PRF 260
Query: 427 SPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS---GG 477
SP G +A V + + V D ++R+ + S W+P +++++TS G
Sbjct: 261 SPDGKTLALVLSKTGSLQVYTLDLTSRKLTQITSGRSNNTEPFWNPDGKSLIFTSDRGGK 320
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ I +N+ D A +RLT G N ++PDG+++V + NL
Sbjct: 321 PQ---------IYQVNLTD----GATKRLTWQGSQNLGGQITPDGRFLVMVNRSNSGFNL 367
Query: 538 YIMDAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFAS 576
D E G L + L E P + +P+G + ++S
Sbjct: 368 AKQDLETGSVQILTKTLLDESP------SIAPNGGMVIYSS 402
>gi|222111173|ref|YP_002553437.1| translocation protein tolb [Acidovorax ebreus TPSY]
gi|221730617|gb|ACM33437.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax
ebreus TPSY]
Length = 440
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P + Y S F S
Sbjct: 177 RIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWAPTGTQLAYVS----FESRKP 232
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V V DV + RRL N + +N+ P+ SPDG+ + +R G LY +DA G
Sbjct: 233 VV-----YVHDV--ATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANG 285
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR GS ++Y + +G G ++ +
Sbjct: 286 GEP---RRLMQSSGIDTEPVFSSDGRSIYFVSDR----GGSPQVYRVAASGGGAERVTFN 338
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + P SPDG+ + + S GG
Sbjct: 339 GSYNIS--PSISPDGQWLAYISRVGG 362
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 69/288 (23%)
Query: 348 HIELFDLVKNKFIELTRFVSPKT------HHLNPFISPD--------SSRVGYHKCRGGS 393
L+D+VK + + FV + H + F+ S+R+ Y G
Sbjct: 128 RFRLWDVVKAQDLGGQSFVVTQADLRLVAHRIADFVYEKLTGERGIFSTRIAYVTKAGSR 187
Query: 394 TR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNS 446
D + + + SP P IS P+++P G ++A+V F P VYV +
Sbjct: 188 YSLWVADADGENAQSALSSPEPIIS--------PAWAPTGTQLAYVSFESRKPVVYVHDV 239
Query: 447 DGSNRRQVY-FKNAFST-VWDPVREAVVYT---------------SGGPEFASESSEVDI 489
RR + F+ + S W P + T G P +SS +D
Sbjct: 240 ATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDT 299
Query: 490 ISINVDDVDGV-------------------SAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
+ D + R+T NG N PS+SPDG+W+ + S
Sbjct: 300 EPVFSSDGRSIYFVSDRGGSPQVYRVAASGGGAERVTFNGSYNISPSISPDGQWLAYISR 359
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
G L++MD + G + + +D +++P+ I +A+ +
Sbjct: 360 VGGAYKLHVMDFKSGSVTAVTDTS----ADENPSFAPNSRLIVYATQQ 403
>gi|15604171|ref|NP_220686.1| translocation protein TolB [Rickettsia prowazekii str. Madrid E]
gi|383487141|ref|YP_005404821.1| translocation protein TolB [Rickettsia prowazekii str. GvV257]
gi|383487718|ref|YP_005405397.1| translocation protein TolB [Rickettsia prowazekii str. Chernikova]
gi|383488565|ref|YP_005406243.1| translocation protein TolB [Rickettsia prowazekii str. Katsinyian]
gi|383489406|ref|YP_005407083.1| translocation protein TolB [Rickettsia prowazekii str. Dachau]
gi|383499543|ref|YP_005412904.1| translocation protein TolB [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500380|ref|YP_005413740.1| translocation protein TolB [Rickettsia prowazekii str. RpGvF24]
gi|386082138|ref|YP_005998715.1| TolB protein [Rickettsia prowazekii str. Rp22]
gi|6647892|sp|Q9ZDM5.1|TOLB_RICPR RecName: Full=Protein TolB; Flags: Precursor
gi|3860863|emb|CAA14763.1| TOLB PROTEIN PRECURSOR (tolB) [Rickettsia prowazekii str. Madrid E]
gi|292571902|gb|ADE29817.1| TolB protein precursor [Rickettsia prowazekii str. Rp22]
gi|380757506|gb|AFE52743.1| translocation protein TolB [Rickettsia prowazekii str. GvV257]
gi|380758077|gb|AFE53313.1| translocation protein TolB [Rickettsia prowazekii str. RpGvF24]
gi|380760597|gb|AFE49119.1| translocation protein TolB [Rickettsia prowazekii str. Chernikova]
gi|380761444|gb|AFE49965.1| translocation protein TolB [Rickettsia prowazekii str. Katsinyian]
gi|380762289|gb|AFE50809.1| translocation protein TolB [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763129|gb|AFE51648.1| translocation protein TolB [Rickettsia prowazekii str. Dachau]
Length = 443
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 33/248 (13%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P F+ D+I +V + + R + ++ T + V V S P F+ +
Sbjct: 203 PRFAHSADKIFYVSY---------ATKSRALVYEKDLKTGKESVVGDFVGISFAPRFSPD 253
Query: 484 SSEVDIISI------NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++SI ++ ++D + +LT N PS SPDGK IVF S + G
Sbjct: 254 GKKA-VMSIAKNGSTHIYEIDLATKQLNKLTNGFGINTSPSYSPDGKKIVFNSDKNGVPQ 312
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI--HPN 594
LYIM+++G + + R++ G S +WSP G++IAF G +F + ++ +P
Sbjct: 313 LYIMNSDGSD---VQRISFGVGSYASPSWSPRGDYIAFTKIIRQDGEKTFNIGIMKAYPQ 369
Query: 595 GTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G ++I SG + P +SP+G+ I+F+ + + P +IF I L
Sbjct: 370 DHGNSERIITSGYL--VDSPCWSPNGRVIMFSKGWPSKANAP--------GKNKIFTIDL 419
Query: 654 DGSDLKRL 661
G + + +
Sbjct: 420 TGHNEREI 427
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG+ + ++ GS +Y I L KL + G P +SPDGK IVF
Sbjct: 250 FSPDGKKAVMSIAKN----GSTHIYEIDLATKQLNKL--TNGFGINTSPSYSPDGKKIVF 303
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD G+ +++ + DGSD++R++ +P+W PR
Sbjct: 304 NSDKNGVP--------------QLYIMNSDGSDVQRISFGVGSYASPSWSPR 341
>gi|110804634|ref|YP_688154.1| translocation protein TolB [Shigella flexneri 5 str. 8401]
gi|425209999|ref|ZP_18605740.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA4]
gi|123147175|sp|Q0T6X7.1|TOLB_SHIF8 RecName: Full=Protein TolB; Flags: Precursor
gi|110614182|gb|ABF02849.1| translocation protein TolB precursor [Shigella flexneri 5 str.
8401]
gi|408140756|gb|EKH70243.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA4]
Length = 430
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDL----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS +
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DLAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|220935397|ref|YP_002514296.1| translocation protein TolB [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|254764843|sp|B8GUI9.1|TOLB_THISH RecName: Full=Protein TolB; Flags: Precursor
gi|219996707|gb|ACL73309.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 435
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 109/268 (40%), Gaps = 53/268 (19%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+ V ++DG N R ++ S VW P + Y S F + +SE I V D+D
Sbjct: 185 LQVADADGHNPRTIFRSRQPILSPVWSPDGRRLAYVS----FENRNSE-----IYVQDID 235
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G R + G N+A P+ SPDG+ + +R G ++Y+M+ L R+T
Sbjct: 236 GAQRERIASFQGINSA-PAWSPDGRRMALTLSRDGQPDIYVMNLAD---RSLLRVTNSRS 291
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSP 617
DT W+PDG + F SDR +G+ ++Y +G R+L G R N +P SP
Sbjct: 292 IDTEPEWTPDGRNLLFTSDR----AGNPQIYEQSLSGGQPRRLTFDG---RYNGNPTLSP 344
Query: 618 DGKSIVFTSDYGG---------------------ISAEPISTPHQYQ---------PYGE 647
DG+ + + GG + P P+ GE
Sbjct: 345 DGRLVAMVNGDGGRFRIAVLDRQTRQFRLLTDGRLDEAPSFAPNGSMIIYATAGRGGQGE 404
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + DG + L E PAW P
Sbjct: 405 LAAVSADGRVRQSLVLQEGEVREPAWSP 432
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 38/255 (14%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
L+P SPD R+ Y E+ N+++ +++I + I+ F+ S P++SP G
Sbjct: 206 LSPVWSPDGRRLAYVSF------ENRNSEIYVQDIDGAQRERIASFQGINSAPAWSPDGR 259
Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTS---GGPEFAS 482
R+A P +YV+N + +V + T W P +++TS G P+
Sbjct: 260 RMALTLSRDGQPDIYVMNLADRSLLRVTNSRSIDTEPEWTPDGRNLLFTSDRAGNPQIYE 319
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+S + G RRLT +G+ N P++SPDG+ + + G + ++D
Sbjct: 320 QS------------LSG-GQPRRLTFDGRYNGNPTLSPDGRLVAMVNGDGGRFRIAVLDR 366
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+ + LT+G D +++P+G I +A+ G E+ + +G + L+
Sbjct: 367 QTRQ---FRLLTDGRL-DEAPSFAPNGSMIIYATAGRG---GQGELAAVSADGRVRQSLV 419
Query: 603 QSGSAGRANHPYFSP 617
G P +SP
Sbjct: 420 L--QEGEVREPAWSP 432
>gi|333914990|ref|YP_004488722.1| protein tolB [Delftia sp. Cs1-4]
gi|333745190|gb|AEF90367.1| Protein tolB [Delftia sp. Cs1-4]
Length = 439
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P + Y S F S
Sbjct: 176 RIAYVTKAGSNYRLWVADADGENAQSALSSPEPIISPAWSPTGTQLAYVS----FESRKP 231
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V V DV S RRL N + +N+ P+ SPDG + +R G LY++ A+G
Sbjct: 232 VV-----YVHDV--ASGRRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQG 284
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT N+S DG I F SDR G+ ++Y + +G ++ +
Sbjct: 285 GE---PRRLMQSSGIDTEPNFSSDGRSIYFVSDR----GGAPQIYKVPASGGSAERVTFT 337
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + P SPDGK + + S GG
Sbjct: 338 GNYNIS--PSVSPDGKWLAYVSRVGG 361
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553
V D DG +A L++ + P+ SP G + + S + +Y+ D G RL
Sbjct: 191 VADADGENAQSALSSP-EPIISPAWSPTGTQLAYVSFESRKPVVYVHDVASGR----RRL 245
Query: 554 TEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
S++ WSPDG +A RD G ++YLI G R+L+QS +G
Sbjct: 246 VANFRGSNSAPAWSPDGNSLAVTLSRD----GGSQLYLISAQGGEPRRLMQS--SGIDTE 299
Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
P FS DG+SI F SD GG +I+K+ G +R+T
Sbjct: 300 PNFSSDGRSIYFVSDRGGAP--------------QIYKVPASGGSAERVT 335
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 97/240 (40%), Gaps = 57/240 (23%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G + R D + + + SP P IS P++SP G ++A+V
Sbjct: 174 STRIAYVTKAGSNYRLWVADADGENAQSALSSPEPIIS--------PAWSPTGTQLAYVS 225
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDPVREAVVYT--------------SGG 477
F P VYV + RR V F+ + S W P ++ T GG
Sbjct: 226 FESRKPVVYVHDVASGRRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGG 285
Query: 478 --------------PEFASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFP 516
P F+S+ + +S I G SA R+T G N P
Sbjct: 286 EPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGGAPQIYKVPASGGSA-ERVTFTGNYNISP 344
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
SVSPDGKW+ + S G L++MD G + T +D +++P+ I +A+
Sbjct: 345 SVSPDGKWLAYVSRVGGGFKLHVMDLGTGTVNAITDTT----ADESPSFAPNSRLIVYAT 400
>gi|383450432|ref|YP_005357153.1| M28 family aminopeptidase precursor [Flavobacterium indicum
GPTSA100-9]
gi|380502054|emb|CCG53096.1| Probable M28 family aminopeptidase precursor [Flavobacterium
indicum GPTSA100-9]
Length = 738
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
V++LT + +A VSPDGK I F S R+G ++ MD +G L ++T G D
Sbjct: 145 VKQLTNSPGYDAEAVVSPDGKKIAFTSIRSGDLEIWTMDIDGTN---LKQVTSGLGYDGG 201
Query: 563 CNWSPDGEWIAFASDRDNPGS----------------GSFEMYLIHPNGTGLRKLIQSGS 606
C +S D + + F S R + E+Y + +G+ L+++ G
Sbjct: 202 CFFSHDSKKLVFRSSRPKTAEEIKEYKDLLAENLVAPTNMEIYTCNVDGSDLKQITNLGK 261
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
A A P+F P K I+F+S++ + + +Q ++ I +DG+ LK++T S
Sbjct: 262 ANWA--PFFHPSDKKIIFSSNHHAVRG------YDFQ----LYMINIDGTGLKQITWESE 309
Query: 667 EDGTPAWGP 675
+ P + P
Sbjct: 310 FNAFPMFSP 318
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 505 RLTTNGKNNAFPS-VSPDGKWIVFRSTRTG-------------------YKNLYIMDAEG 544
+L + GK S PDGK I++ ST Y I A+
Sbjct: 81 KLVSTGKGRTTCSYFMPDGKHIIYASTHAANQACPAPPKPKDGKYLWPIYSEFEIYMADN 140
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
+G + +LT P D SPDG+ IAF S R SG E++ + +GT L+++ +
Sbjct: 141 -KGQIVKQLTNSPGYDAEAVVSPDGKKIAFTSIR----SGDLEIWTMDIDGTNLKQV--T 193
Query: 605 GSAGRANHPYFSPDGKSIVFTS----------DYGGISAEPISTPHQYQPYGEIFKIKLD 654
G +FS D K +VF S +Y + AE + P EI+ +D
Sbjct: 194 SGLGYDGGCFFSHDSKKLVFRSSRPKTAEEIKEYKDLLAENLVAPTNM----EIYTCNVD 249
Query: 655 GSDLKRLTQNSFEDGTPAWGPRFIRPVD 682
GSDLK++T G W P F P D
Sbjct: 250 GSDLKQITNL----GKANWAP-FFHPSD 272
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528
EAVV + G + A S + I D+DG + ++++T+ + S D K +VFR
Sbjct: 157 EAVV-SPDGKKIAFTSIRSGDLEIWTMDIDGTN-LKQVTSGLGYDGGCFFSHDSKKLVFR 214
Query: 529 STR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
S+R YK+L Y + +G + + L + W+ + P
Sbjct: 215 SSRPKTAEEIKEYKDLLAENLVAPTNMEIYTCNVDGSDLKQITNLGKANWAPF---FHPS 271
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
+ I F+S+ F++Y+I+ +GTGL+++ P FSPDGK +VF+S+
Sbjct: 272 DKKIIFSSNHHAVRGYDFQLYMINIDGTGLKQITWESEFNA--FPMFSPDGKKLVFSSNR 329
Query: 629 GGISAE 634
G E
Sbjct: 330 QGAPRE 335
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 441 VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y N DGS+ +Q+ K ++ + P + ++++S A + + IN+D
Sbjct: 243 IYTCNVDGSDLKQITNLGKANWAPFFHPSDKKIIFSSN--HHAVRGYDFQLYMINIDG-- 298
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY---KNLYIMD 541
+ ++++T + NAFP SPDGK +VF S R G N++I D
Sbjct: 299 --TGLKQITWESEFNAFPMFSPDGKKLVFSSNRQGAPRETNVFIAD 342
>gi|56551061|ref|YP_161900.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis ZM4]
gi|260753278|ref|YP_003226171.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411598|ref|YP_005620963.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|397676915|ref|YP_006518453.1| protein tolB [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|67461903|sp|Q5NR65.1|TOLB_ZYMMO RecName: Full=Protein TolB; Flags: Precursor
gi|56542635|gb|AAV88789.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis ZM4]
gi|258552641|gb|ACV75587.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|335931972|gb|AEH62512.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis ATCC 10988]
gi|395397604|gb|AFN56931.1| Protein tolB [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 458
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 123/299 (41%), Gaps = 76/299 (25%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
+DG N L N +S + P F+P + ++ + P +YV +
Sbjct: 214 QDGANHRFLTNGQSMVLT----------PRFAPNQQTVTYLSYVGNSPRIYVYTLGSGHV 263
Query: 452 RQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
R V K F+ + P + +V++ S + DI + V G A R T+
Sbjct: 264 RLVVNKPNTTFAPRFSPDGKTIVFS------MSVAGNTDIYKV---PVSGGQATRLTTSP 314
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
G + A PS SPDG IVF S R+G + +YIM+A+G +R++ G WSP G
Sbjct: 315 GIDTA-PSFSPDGSKIVFESDRSGSQQIYIMNADGSN---QNRISFGSGRYATPVWSPRG 370
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF----- 624
+ IAF G F + ++ +G+G + L + + P +SP+G+ I F
Sbjct: 371 DLIAFTKL-----GGGFHVGVMKTDGSGEQILT---NGWQDEGPSWSPNGRVIAFFRTAR 422
Query: 625 --------TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ D G++ I TP LDGSD P+WGP
Sbjct: 423 NSGHTELWSVDLTGVNERHIPTP-------------LDGSD-------------PSWGP 455
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG++ P +P+ + + + S +Y+ G +
Sbjct: 209 LAIMDQDG--ANHRFLTNGQSMVLTPRFAPNQQTVTYLSYVGNSPRIYVYTLGSGH---V 263
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P + +SPDG+ I F+ +G+ ++Y + +G +L + S G
Sbjct: 264 RLVVNKPNTTFAPRFSPDGKTIVFSMSV----AGNTDIYKVPVSGGQATRL--TTSPGID 317
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P FSPDG IVF SD G +I+ + DGS+ R++ S T
Sbjct: 318 TAPSFSPDGSKIVFESDRSGSQ--------------QIYIMNADGSNQNRISFGSGRYAT 363
Query: 671 PAWGPR 676
P W PR
Sbjct: 364 PVWSPR 369
>gi|261754105|ref|ZP_05997814.1| protein tolB [Brucella suis bv. 3 str. 686]
gi|261743858|gb|EEY31784.1| protein tolB [Brucella suis bv. 3 str. 686]
Length = 443
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT+N + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSNQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSNQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSNQAIDTGASYSPDGSQIVFTSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|448241013|ref|YP_007405066.1| periplasmic protein [Serratia marcescens WW4]
gi|445211377|gb|AGE17047.1| periplasmic protein [Serratia marcescens WW4]
gi|453062188|gb|EMF03179.1| translocation protein TolB [Serratia marcescens VGH107]
Length = 430
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPYELRVADYDGYNQFTVHRSPEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A+R++ + ++N P+ SPDG + F +++G NLY+M+
Sbjct: 222 GRSALVVQTL------ANGAIRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + +LT+G ++T W PDG+ +AF SD+ G ++Y I +G ++L
Sbjct: 276 GSGQ---ITQLTDGRNNNTEPTWFPDGQSLAFTSDQ----GGRPQIYKISASGGAAQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + S DGK +V S G I K L ++ LT
Sbjct: 329 WEGSQNQDSE--VSSDGKFLVMVSTNSGAQ--------------HIAKQDLGSGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
+F D TP+ P
Sbjct: 373 -GTFLDETPSIAP 384
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAIRQIASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS 485
++AF +YV+N Q+ N W P +++ +TS +
Sbjct: 257 KLAFALSKSGSLNLYVMNLGSGQITQLTDGRNNNTEPTWFPDGQSLAFTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I I+ A +RLT G N VS DGK++V ST +G +++ D
Sbjct: 311 RPQIYKISASG----GAAQRLTWEGSQNQDSEVSSDGKFLVMVSTNSGAQHIAKQDL--- 363
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G G ++ G + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 364 -GSGAVQVLTGTFLDETPSIAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|254253146|ref|ZP_04946464.1| TolB [Burkholderia dolosa AUO158]
gi|124895755|gb|EAY69635.1| TolB [Burkholderia dolosa AUO158]
Length = 432
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 202 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 258
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I S+N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 259 ---LSLTGNTQIYSVNANG----GGLRRLTQSNSIDTEPFYSPDGRWIYFTSDRGGAPQI 311
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 312 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 360
Query: 598 LRKLIQSGSAG---RANH---PYFSPDGKSIVFTSDYGG 630
+ +Q+G+A NH P F+ +G+ I++ + GG
Sbjct: 361 --QDLQTGAANAITNTNHDESPSFAANGQYILYATQSGG 397
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 565 WSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSP G +A+ S +R P + IH TG R ++ S G + P +SPDG ++
Sbjct: 204 WSPSGTKVAYVSFERKKP------IVYIHDLPTGRRYMV-SDQKGNNSAPAWSPDGNTLA 256
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + +I+ + +G L+RLTQ++ D P + P
Sbjct: 257 VALSLTGNT--------------QIYSVNANGGGLRRLTQSNSIDTEPFYSP 294
>gi|339998659|ref|YP_004729542.1| tolB protein [Salmonella bongori NCTC 12419]
gi|339512020|emb|CCC29737.1| tolB protein precursor [Salmonella bongori NCTC 12419]
Length = 430
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|121600577|ref|YP_992167.1| translocation protein TolB [Burkholderia mallei SAVP1]
gi|121229387|gb|ABM51905.1| tolB protein [Burkholderia mallei SAVP1]
Length = 463
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIAVAT-RRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A + R P Y+ + L+D VK + + + KT H + +I
Sbjct: 126 GANAFVAGSVNREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 185
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 186 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 237
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 238 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 290
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 291 SLTGNTQIYSVSSTG----TGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 346
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
AEG R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 347 AEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 393
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+QSG+A R P F+ +G+ I++ GG S
Sbjct: 394 LQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRS 430
>gi|83816446|ref|YP_446482.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855]
gi|83757840|gb|ABC45953.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855]
Length = 1065
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 107/274 (39%), Gaps = 65/274 (23%)
Query: 372 HLNPFISPDSSRVGYHKCRG-------GSTREDGNNQLLLENIKSPLPDISLFRFDGSFP 424
+++P +SPD V + R + E G LE +S P RF S
Sbjct: 332 NISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSN-PHFDALRFINSAG 390
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASES 484
++SP G R AF+ F +DG N N F+ +R
Sbjct: 391 AWSPDGRRFAFITF-------ADGRNE-----INTFNVQTGEIRTRTA------------ 426
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V+ V A+ L + SPDG+ I F G +LY+ D +
Sbjct: 427 ------------VENVGAIHNL----------AWSPDGQSIAFSGLEGGLSDLYVYDLDQ 464
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR----- 599
+ +LT ++ WSPDGE +AF +DR G+ +FE GL
Sbjct: 465 KN---VRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGT-NFETLEYGEERIGLIDVASG 520
Query: 600 --KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+ I+ S G ++P FSPDG+SI F +D G
Sbjct: 521 EIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGF 554
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHR 552
VD V G + + + + N P+VSPDG+++ F S R + NL++ DAE GE + +
Sbjct: 314 VDSV-GTAVIGDPGADNQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGE---IVQ 369
Query: 553 LTEGPWSD----------TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
EG S+ + WSPDG AF + D G E+ + +R
Sbjct: 370 ELEGTRSNPHFDALRFINSAGAWSPDGRRFAFITFAD----GRNEINTFNVQTGEIRTRT 425
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ G ++ +SPDG+SI F+ GG+S +++ LD ++++LT
Sbjct: 426 AVENVGAIHNLAWSPDGQSIAFSGLEGGLS--------------DLYVYDLDQKNVRQLT 471
Query: 663 QNSFEDGTPAWGP 675
+ + P W P
Sbjct: 472 NDRYAALQPTWSP 484
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 124/308 (40%), Gaps = 45/308 (14%)
Query: 279 TLFFHRKSEEDDWI-SVYKVILPQT-GLVSTESVSIQRVTPPGLHA---FTPATSPGNNK 333
TL S ++W S LP T G +SV + PG +PA SP + +
Sbjct: 284 TLGITADSLSEEWKQSTRDAFLPATDGRTPVDSVGTAVIGDPGADNQLNISPAVSP-DGR 342
Query: 334 FIAVATRRPTSSYRHI-----------ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
++A +RR + EL N + RF++ SPD
Sbjct: 343 YVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGAW-----SPDGR 397
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFP--SFSPKGDRIAFVEFP 439
R + T DG N++ N+++ + + G+ ++SP G IAF
Sbjct: 398 RFAF------ITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSIAFSGLE 451
Query: 440 G----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSG----GPEFAS-ESSEVD 488
G +YV + D N RQ+ A W P E + +T+ G F + E E
Sbjct: 452 GGLSDLYVYDLDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETLEYGEER 511
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I I+V + + +R +T ++N P SPDG+ I F + + G+K++Y D + Y
Sbjct: 512 IGLIDVASGE-IRTIRPFSTGMQHN--PQFSPDGRSIYFVADQDGFKDVYRYDLDEEATY 568
Query: 549 GLHRLTEG 556
+ L G
Sbjct: 569 RVTELKTG 576
>gi|430003642|emb|CCF19431.1| conserved protein of unknown function [Rhizobium sp.]
Length = 280
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
++ G +FA D+ I D++G R G+N+ P SPDG+WI F S+R+
Sbjct: 118 WSPDGRKFAYCGIRDDLFDIYTIDMEGGEECRLTFGEGRNDG-PDYSPDGRWIYFNSSRS 176
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR----DNPGSGSFEM 588
G ++ + AEGG R+TE + D + SPDG+ I F S D+P +
Sbjct: 177 GLMQIWRVPAEGGAA---ERITESAYGDWFPHPSPDGDRIIFLSYDPEVFDHPRDKPVRI 233
Query: 589 YLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFT 625
++ +G L + G G N P +SPDG + +
Sbjct: 234 RMMDVDGGNAETLFELFGGQGTLNSPNWSPDGSAFAYV 271
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 23/255 (9%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P++SP G + +Y + DGS R Q+ F+ + + + G S+
Sbjct: 29 PNWSPCGRYLLLNSEGLIYTLAIDGSMRPQL-VDTGFARQCN--NDHGICPDGSLIAISD 85
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+E +I V + RL T + + SPDG+ + R ++Y +D E
Sbjct: 86 KAEFGQSAIYV--LPAAGGEPRLVTRNLPSYWHGWSPDGRKFAYCGIRDDLFDIYTIDME 143
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
GGE RLT G + ++SPDG WI F S R SG +++ + G ++ +
Sbjct: 144 GGE---ECRLTFGEGRNDGPDYSPDGRWIYFNSSR----SGLMQIWRVPAEGGAAERITE 196
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
S HP SPDG I+F +S +P H I + +DG + + L +
Sbjct: 197 SAYGDWFPHP--SPDGDRIIF------LSYDPEVFDHPRDKPVRIRMMDVDGGNAETLFE 248
Query: 664 NSFEDGT---PAWGP 675
GT P W P
Sbjct: 249 LFGGQGTLNSPNWSP 263
>gi|408378004|ref|ZP_11175603.1| periplasmic component of the Tol biopolymer transport system
[Agrobacterium albertimagni AOL15]
gi|407748118|gb|EKF59635.1| periplasmic component of the Tol biopolymer transport system
[Agrobacterium albertimagni AOL15]
Length = 278
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 426 FSPKGDRIAFVEF-----PGVYVVNSDGSNRRQVYFKN-AFSTVWDPVREAVVYTSGGPE 479
SP G IAF + +Y++ RQV K ++ W P + + Y
Sbjct: 74 ISPDGASIAFSDHTLFGKSCIYMLGDGDDEPRQVTDKMPSYWHGWSPDGKELAYC----- 128
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
+ DI +I+ + RRLT +N P +PDG+WI F S+RTG ++
Sbjct: 129 -GERNGAFDIYTISTKG----GSERRLTNGEGHNDGPDYTPDGQWIYFNSSRTGTMQIWR 183
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRD---NPGSGSFEMYLIHPNG 595
M +G + L +LT + D + SPDG+ I F S D D +P + L+ +G
Sbjct: 184 MRIDGSD---LQQLTSDGYGDWFPHPSPDGKKILFLSYDADVEGHPRDKQVRLRLMDADG 240
Query: 596 TGLRKLIQ-SGSAGRANHPYFSPDGKSIVFT 625
+ LI+ G G N P ++PDG + F
Sbjct: 241 GNVETLIEFFGGQGSINVPNWAPDGSAFAFV 271
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
R T+ + + SPDGK + + R G ++Y + +GG RLT G + +
Sbjct: 105 RQVTDKMPSYWHGWSPDGKELAYCGERNGAFDIYTISTKGGS---ERRLTNGEGHNDGPD 161
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
++PDG+WI F S R +G+ +++ + +G+ L++L G HP SPDGK I+F
Sbjct: 162 YTPDGQWIYFNSSR----TGTMQIWRMRIDGSDLQQLTSDGYGDWFPHP--SPDGKKILF 215
Query: 625 TSDYGGISAEP 635
S + P
Sbjct: 216 LSYDADVEGHP 226
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 518 VSPDGKWIVFRS-TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+SPDG I F T G +Y++ G+G R WSPDG+ +A+
Sbjct: 74 ISPDGASIAFSDHTLFGKSCIYML----GDGDDEPRQVTDKMPSYWHGWSPDGKELAYCG 129
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
+R +G+F++Y I G R+L + G + P ++PDG+ I F S G
Sbjct: 130 ER----NGAFDIYTISTKGGSERRL--TNGEGHNDGPDYTPDGQWIYFNSSRTGTM---- 179
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+I+++++DGSDL++LT + + D P
Sbjct: 180 ----------QIWRMRIDGSDLQQLTSDGYGDWFP 204
>gi|377821621|ref|YP_004977992.1| translocation protein TolB [Burkholderia sp. YI23]
gi|357936456|gb|AET90015.1| translocation protein TolB [Burkholderia sp. YI23]
Length = 430
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 143/378 (37%), Gaps = 74/378 (19%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G + F++ + + P Y L+D VK + + VS ++ H + +I
Sbjct: 94 AKGADAFVSGSVNKLPNGQYEVRFRLYDTVKQQNLGGLSLVSAESGLRMSAHKIADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLLGGRGVFATRLSYVIQTGGRYQLQISDSDGQDAKIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTSGGPEF 480
G ++A+V F P VY+ D R+V N W P +
Sbjct: 206 DGTKVAYVSFEKKKPVVYI--HDLPTGRRVVVSNQKGNNSAPAWSPDGRKLAVA------ 257
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
S + I +N D S +RRLT + P+ SPDG I F S R G +Y M
Sbjct: 258 LSRTGNTQIFEVNADG----SGLRRLTQGSSIDTEPAYSPDGSSIYFTSDRGGQPQIYKM 313
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHPNGTG 597
A G R+T +T SPDG+ +A+ S G F++Y L TG
Sbjct: 314 PAAGESAGTAQRVTFAGSYNTSPRVSPDGKQLAYISRT----GGGFKLYLQDLSSGTATG 369
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L S P F+ +G+ I++ + G G + + DG
Sbjct: 370 LTDTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRT 409
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ L+ P+WGP
Sbjct: 410 RQVLSVQGGAVREPSWGP 427
>gi|420324222|ref|ZP_14826007.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri CCH060]
gi|391256601|gb|EIQ15727.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri CCH060]
Length = 430
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + + F SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLVFTSDQ----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + +V+TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLVFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|261343492|ref|ZP_05971137.1| Tol-Pal system beta propeller repeat protein TolB [Providencia
rustigianii DSM 4541]
gi|282568638|gb|EFB74173.1| Tol-Pal system beta propeller repeat protein TolB [Providencia
rustigianii DSM 4541]
Length = 430
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P + + Y + F S
Sbjct: 166 RIAYVVKTNGGQYPFELRVSDYDGFNQFTVHRSPEPLMSPAWSPDGQKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GSSALVIQTLSS------GAVRQVAKFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y ++ NG ++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQVYKMNINGGSPVRVS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + SPDG +V S GG Q+ I K L +++ LT
Sbjct: 329 YEGTQNQDAD--VSPDGTFLVMVSSGGG---------QQH-----IAKQDLATGNVEYLT 372
Query: 663 QNSFEDGTPAWGP 675
+F D TP+ P
Sbjct: 373 -TTFLDETPSIAP 384
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD ++ Y T E G++ L+++ + S + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGQKIAY------VTFESGSSALVIQTLSSGAVRQVAKFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + +VYTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ G S VR ++ G N VSPDG ++V S+ G +++ D G
Sbjct: 311 RPQVYKMNIN---GGSPVR-VSYEGTQNQDADVSPDGTFLVMVSSGGGQQHIAKQDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT + D + +P+G + ++S + G G+ + L+ +G +L
Sbjct: 367 N---VEYLTT-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|343499028|ref|ZP_08737031.1| translocation protein TolB [Vibrio tubiashii ATCC 19109]
gi|418481095|ref|ZP_13050144.1| translocation protein TolB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823527|gb|EGU58143.1| translocation protein TolB [Vibrio tubiashii ATCC 19109]
gi|384571283|gb|EIF01820.1| translocation protein TolB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 437
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDGK + + S + G ++IM+ GE
Sbjct: 189 LRVSDYDGYN--ERLVLRSKQPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGE---R 243
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG +A + +GS ++Y + N RKL Q + GR+
Sbjct: 244 EKVTSYPRHNGAPRFSPDGSKLALVLSK----TGSLQVYTLDLN---TRKLTQI-TRGRS 295
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG +P +I+++ L + KRLT
Sbjct: 296 NNTEPFWHPDGKSLIFTSDRGG------------KP--QIYQVDLASNSTKRLT 335
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 41/218 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD ++ Y ++G ++ + NI + + S R +G+ P FSP G
Sbjct: 210 MSPAWSPDGKKLAYVSF------QNGQAEIFIMNIYTGEREKVTSYPRHNGA-PRFSPDG 262
Query: 431 DRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS---GGPEFA 481
++A V + + V D + R+ S W P +++++TS G P+
Sbjct: 263 SKLALVLSKTGSLQVYTLDLNTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIY 322
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYKNLYIM 540
+VD+ S ++ +RLT G N ++PDG+++V + TG+ NL +
Sbjct: 323 ----QVDLAS---------NSTKRLTWQGSQNLGGQITPDGRFLVMVNRSNTGF-NLAKL 368
Query: 541 DAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFAS 576
D E G L + L E P + +P+G + ++S
Sbjct: 369 DMETGAMQILTKTLLDESP------SIAPNGGMVIYSS 400
>gi|288940690|ref|YP_003442930.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Allochromatium vinosum DSM 180]
gi|288896062|gb|ADC61898.1| Tol-Pal system beta propeller repeat protein TolB [Allochromatium
vinosum DSM 180]
Length = 436
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 48/262 (18%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P++SP G R+A+V F N+R + S+ + + +G P F+ +
Sbjct: 210 PAWSPDGQRLAYVSF----------ENKRAAIYIQELSSGRRELVASHPGINGSPAFSPD 259
Query: 484 SSEV----------DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
S + DI S+N+ + + RLT + + PS SPDG+ I+F S R G
Sbjct: 260 GSRLAMTLSKDGNPDIYSLNLLSRE----LTRLTDHYAIDTEPSWSPDGQSIIFTSDRGG 315
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y M A GG + EG + + +++PDG I + R N G+F + +
Sbjct: 316 SPQIYRMAATGGPAERIS--VEGDY-NGRASYAPDGRSIVMVT-RVN---GAFRIGQLD- 367
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+ +L+ G + P F+P+G +++ + +G H+ G + +
Sbjct: 368 LARGVTRLLSRGDLDES--PSFAPNGAMVIYATIHG----------HR----GVLATASV 411
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
+G +RLTQ+S + PAW P
Sbjct: 412 EGGGSQRLTQDSGQVREPAWSP 433
>gi|433606975|ref|YP_007039344.1| hypothetical protein BN6_52060 [Saccharothrix espanaensis DSM
44229]
gi|407884828|emb|CCH32471.1| hypothetical protein BN6_52060 [Saccharothrix espanaensis DSM
44229]
Length = 1024
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
+VRRLT+ G++ P +SPD + +VF S G ++L+++ G +G G+ RLT+ P +++
Sbjct: 111 SVRRLTS-GRDAGHPQLSPDLRSVVFDSAEDGQRDLWVV---GVDGTGVRRLTDSPGNES 166
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
++SPDG +AFA+DRD G E+Y P G + G A P ++P
Sbjct: 167 WPSFSPDGAQVAFATDRD----GEPEVYR-QPVAGGAVVRVTDEPVGAAGEPAWNPVDGR 221
Query: 622 IVFTSDYGG 630
I +T G
Sbjct: 222 IAYTLTAAG 230
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 104/248 (41%), Gaps = 29/248 (11%)
Query: 391 GGSTREDGNNQLLLENIKSPLPD---ISLFRFDGSF---PSFSPKGDRIAFVEF-----P 439
GG G + + PLPD S+ DG S +GD + F P
Sbjct: 42 GGRIAFAGTAHRSIGVVDDPLPDQPATSVPVADGPAHFEDHVSARGDLVVFTSLRDERRP 101
Query: 440 GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499
VY+ DGS RR ++A P +VV+ S +E + D+ + VD
Sbjct: 102 QVYLRGPDGSVRRLTSGRDAGHPQLSPDLRSVVFDS------AEDGQRDLWVVGVDG--- 152
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-W 558
+ VRRLT + N ++PS SPDG + F + R G +Y GG + R+T+ P
Sbjct: 153 -TGVRRLTDSPGNESWPSFSPDGAQVAFATDRDGEPEVYRQPVAGGA---VVRVTDEPVG 208
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
+ W+P IA+ +G + ++ G G+ L + R + P + PD
Sbjct: 209 AAGEPAWNPVDGRIAYTLT----AAGEPRLRVLDGAGVGVPVLGGDQAGWRGHWPVWKPD 264
Query: 619 GKSIVFTS 626
G ++F S
Sbjct: 265 GDGLLFLS 272
>gi|329848730|ref|ZP_08263758.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis
biprosthecum C19]
gi|328843793|gb|EGF93362.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis
biprosthecum C19]
Length = 449
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 34/210 (16%)
Query: 478 PEFASESSEVDIISINVD-------DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
P F+++ +E+ ++++ D D++ + G A P SPDG + F +
Sbjct: 223 PRFSADGTEIAYMALSADSARIFLYDLEARRGEQVAQVRGMAFA-PRYSPDGTKLAFSVS 281
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
+ ++Y+ + L RLT P DT ++S DG IAF SDR GS ++Y+
Sbjct: 282 QGANSDIYVTNLNT---RSLSRLTSDPAIDTSPSFSADGSRIAFTSDR----GGSPQIYV 334
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
+ +G+G R++ G G + P FSP G I FT G + + P
Sbjct: 335 MGADGSGARRITFGG--GLYSTPVFSPKGDLIAFTKQSKGRFSIGVMNP----------- 381
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP--RFI 678
DGS + LT + E+G P W P R+I
Sbjct: 382 ---DGSGERLLTSSYLEEG-PTWAPNGRYI 407
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FS G IA++ +++ + + QV AF+ + P + ++
Sbjct: 223 PRFSADGTEIAYMALSADSARIFLYDLEARRGEQVAQVRGMAFAPRYSPDGTKLAFS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ + DI N++ ++ RLT++ + PS S DG I F S R G +
Sbjct: 280 ---VSQGANSDIYVTNLN----TRSLSRLTSDPAIDTSPSFSADGSRIAFTSDRGGSPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R+T G + +SP G+ IAF G F + +++P+G+G
Sbjct: 333 YVM---GADGSGARRITFGGGLYSTPVFSPKGDLIAFTKQ----SKGRFSIGVMNPDGSG 385
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L S+ P ++P+G+ I+F
Sbjct: 386 ERLLT---SSYLEEGPTWAPNGRYIMF 409
>gi|294508417|ref|YP_003572475.1| hypothetical protein SRM_02602 [Salinibacter ruber M8]
gi|294344745|emb|CBH25523.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
Length = 1065
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 107/274 (39%), Gaps = 65/274 (23%)
Query: 372 HLNPFISPDSSRVGYHKCRG-------GSTREDGNNQLLLENIKSPLPDISLFRFDGSFP 424
+++P +SPD V + R + E G LE +S P RF S
Sbjct: 332 NISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSN-PHFDALRFINSAG 390
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASES 484
++SP G R AF+ F +DG N N F+ +R
Sbjct: 391 AWSPDGRRFAFITF-------ADGRNE-----INTFNVQTGEIRTRTA------------ 426
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V+ V A+ L + SPDG+ I F G +LY+ D +
Sbjct: 427 ------------VENVGAIHNL----------AWSPDGQSIAFSGLEGGLSDLYVYDLDQ 464
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR----- 599
+ +LT ++ WSPDGE +AF +DR G+ +FE GL
Sbjct: 465 KN---VRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGT-NFETLEYGEERIGLIDVESG 520
Query: 600 --KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+ I+ S G ++P FSPDG+SI F +D G
Sbjct: 521 EIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGF 554
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHR 552
VD V G + + + + N P+VSPDG+++ F S R + NL++ DAE GE + +
Sbjct: 314 VDSV-GTAVIGDPGADNQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGE---IVQ 369
Query: 553 LTEGPWSD----------TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
EG S+ + WSPDG AF + D G E+ + +R
Sbjct: 370 ELEGTRSNPHFDALRFINSAGAWSPDGRRFAFITFAD----GRNEINTFNVQTGEIRTRT 425
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+ G ++ +SPDG+SI F+ GG+S +++ LD ++++LT
Sbjct: 426 AVENVGAIHNLAWSPDGQSIAFSGLEGGLS--------------DLYVYDLDQKNVRQLT 471
Query: 663 QNSFEDGTPAWGP 675
+ + P W P
Sbjct: 472 NDRYAALQPTWSP 484
Score = 45.4 bits (106), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 125/308 (40%), Gaps = 45/308 (14%)
Query: 279 TLFFHRKSEEDDWI-SVYKVILPQT-GLVSTESVSIQRVTPPGLHA---FTPATSPGNNK 333
TL S ++W S LP T G +SV + PG +PA SP + +
Sbjct: 284 TLGITADSLSEEWKQSTRDAFLPATDGRTPVDSVGTAVIGDPGADNQLNISPAVSP-DGR 342
Query: 334 FIAVATRRPTSSYRHI-----------ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
++A +RR + EL N + RF++ SPD
Sbjct: 343 YVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGAW-----SPDGR 397
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFP--SFSPKGDRIAFVEFP 439
R + T DG N++ N+++ + + G+ ++SP G IAF
Sbjct: 398 RFAF------ITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSIAFSGLE 451
Query: 440 G----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSG----GPEFAS-ESSEVD 488
G +YV + D N RQ+ A W P E + +T+ G F + E E
Sbjct: 452 GGLSDLYVYDLDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETLEYGEER 511
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I I+V+ + + +R +T ++N P SPDG+ I F + + G+K++Y D + Y
Sbjct: 512 IGLIDVESGE-IRTIRPFSTGMQHN--PQFSPDGRSIYFVADQDGFKDVYRYDLDEEATY 568
Query: 549 GLHRLTEG 556
+ L G
Sbjct: 569 RVTELKTG 576
>gi|323496600|ref|ZP_08101653.1| translocation protein TolB [Vibrio sinaloensis DSM 21326]
gi|323318346|gb|EGA71304.1| translocation protein TolB [Vibrio sinaloensis DSM 21326]
Length = 439
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDG+ + + S + G ++IM+ GE
Sbjct: 191 LRVSDYDGYN--ERLVLRSKQPLMSPAWSPDGQKLAYVSFQNGQAEIFIMNIYTGEQ--- 245
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG +A + +GS ++Y + RKL Q + GR+
Sbjct: 246 EKVTSYPRHNGAPRFSPDGNTLALVLSK----TGSLQVYTLD---LKTRKLTQI-TRGRS 297
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ PY+ PDGKS++FTSD GG +P +I++++L + KRLT
Sbjct: 298 NNTEPYWHPDGKSLIFTSDRGG------------RP--QIYQVQLANGETKRLT 337
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 54/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N+ L+ K PL P++SP G ++A+V F + + +++
Sbjct: 197 DGYNERLVLRSKQPLMS----------PAWSPDGQKLAYVSFQ---------NGQAEIFI 237
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDII-----SINVDDVDGVSAVRRLT--TN 509
N ++ + V + +G P F+ + + + ++ S+ V +D R+LT T
Sbjct: 238 MNIYTGEQEKVTSYPRH-NGAPRFSPDGNTLALVLSKTGSLQVYTLD--LKTRKLTQITR 294
Query: 510 GK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
G+ NN P PDGK ++F S R G +Y + GE RLT + +PD
Sbjct: 295 GRSNNTEPYWHPDGKSLIFTSDRGGRPQIYQVQLANGE---TKRLTWQGSQNLGGQITPD 351
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G ++ +R N G + L L K + S P +P+G ++++S Y
Sbjct: 352 GRFLVMV-NRSNSGFNLAKQDLETGAVQILTKTLLDES------PSIAPNGGMVIYSSIY 404
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + + +DG RL + PAW P
Sbjct: 405 NKTNV--------------LSMVSIDGRFKARLPATNGRVRAPAWSP 437
>gi|302381977|ref|YP_003817800.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
subvibrioides ATCC 15264]
gi|302192605|gb|ADL00177.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
subvibrioides ATCC 15264]
Length = 466
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 24/160 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDG + F R G ++Y+M+ + L RLT P DT ++SPD I F
Sbjct: 268 PRYSPDGTKVAFSIIRGGNTDVYVMNLRTRQ---LSRLTSDPGIDTSPSFSPDASRIVFN 324
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
SDR +G+ +Y+++ +G+ R + + G G P +SP G I FT GG
Sbjct: 325 SDR----TGTPRLYVMNADGSNQRPISRGG--GSYTAPAWSPRGDLIAFTKSGGG----- 373
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+ I + DGS + L+++ FE+G P+W P
Sbjct: 374 -----QF----GIGVMATDGSGERMLSRSYFEEG-PSWAP 403
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 34/210 (16%)
Query: 346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405
Y I L++L + L F L P SPD ++V + RG GN + +
Sbjct: 242 YSRIYLYNLQTGRRESLGEF---DGQALAPRYSPDGTKVAFSIIRG------GNTDVYVM 292
Query: 406 NIKSPLPDISLFRFDGSF---PSFSPKGDRIAF----VEFPGVYVVNSDGSNRRQVYFKN 458
N+++ +S D PSFSP RI F P +YV+N+DGSN+R +
Sbjct: 293 NLRT--RQLSRLTSDPGIDTSPSFSPDASRIVFNSDRTGTPRLYVMNADGSNQRPISRGG 350
Query: 459 AFST--VWDPVREAVVYT-SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515
T W P + + +T SGG +F I V DG + R+ +
Sbjct: 351 GSYTAPAWSPRGDLIAFTKSGGGQFG----------IGVMATDG--SGERMLSRSYFEEG 398
Query: 516 PSVSPDGKWIVF-RSTRTGYKNLYIMDAEG 544
PS +P+G++++F R TR G NL+++D G
Sbjct: 399 PSWAPNGRYLMFSRQTRGGNTNLWMVDLSG 428
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
+ RLT++ + PS SPD IVF S RTG LY+M+A+G + R G S T
Sbjct: 299 LSRLTSDPGIDTSPSFSPDASRIVFNSDRTGTPRLYVMNADGSNQRPISR---GGGSYTA 355
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSP G+ IAF G G F + ++ +G+G R L +S P ++P+G+ +
Sbjct: 356 PAWSPRGDLIAFTKS----GGGQFGIGVMATDGSGERMLSRSYF---EEGPSWAPNGRYL 408
Query: 623 VFT 625
+F+
Sbjct: 409 MFS 411
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 481 ASESSEVDIIS-INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
A +E++ +S + + D DG + V LT + P S + I + + Y +Y+
Sbjct: 189 AESGTELNRLSRLAIVDQDGYNPVF-LTDGSEIILTPRFSSNPNEITYMALGEDYSRIYL 247
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
+ + G L E +SPDG +AF+ R G+ ++Y+++ L
Sbjct: 248 YNLQTGR---RESLGEFDGQALAPRYSPDGTKVAFSIIR----GGNTDVYVMNLRTRQLS 300
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
+L + G P FSPD IVF SD G TP ++ + DGS+ +
Sbjct: 301 RL--TSDPGIDTSPSFSPDASRIVFNSDRTG-------TPR-------LYVMNADGSNQR 344
Query: 660 RLTQNSFEDGTPAWGPR 676
+++ PAW PR
Sbjct: 345 PISRGGGSYTAPAWSPR 361
>gi|212712433|ref|ZP_03320561.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM
30120]
gi|422018952|ref|ZP_16365503.1| translocation protein TolB [Providencia alcalifaciens Dmel2]
gi|212684890|gb|EEB44418.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM
30120]
gi|414104138|gb|EKT65710.1| translocation protein TolB [Providencia alcalifaciens Dmel2]
Length = 430
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V ++P + V + DG N+ V+ + S W P + + Y + F S
Sbjct: 166 RIAYVVKTNGGQYPYELRVSDYDGFNQFTVHRSPEPLMSPAWSPDGQKIAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SS + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GSSALVIQTLSS------GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + + + SD+ +G ++Y ++ NG ++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPSWMPDSQTLVYTSDQ----AGRPQIYKMNINGGSPVRVS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + SPDG + S GG Q+ I K L +++ LT
Sbjct: 329 YEGSQNQDAD--VSPDGTFLAMVSSGGG---------QQH-----IAKQDLATGNVEYLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSIAP 384
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 34/266 (12%)
Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLF 417
F + T SP+ ++P SPD ++ Y T E G++ L+++ + S + ++ F
Sbjct: 190 FNQFTVHRSPEPL-MSPAWSPDGQKIAY------VTFESGSSALVIQTLSSGAVRQVASF 242
Query: 418 RFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAV 471
P+FSP G ++AF +YV++ RQV + +T W P + +
Sbjct: 243 PRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLGSGQIRQVTDGRSNNTEPSWMPDSQTL 302
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
VYTS ++ I +N++ G S VR ++ G N VSPDG ++ S+
Sbjct: 303 VYTS------DQAGRPQIYKMNIN---GGSPVR-VSYEGSQNQDADVSPDGTFLAMVSSG 352
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
G +++ D G + LT + D + +P+G + ++S + G G+ + L+
Sbjct: 353 GGQQHIAKQDLATGN---VEYLTS-TFLDETPSIAPNGTMVIYSSSQ---GLGTI-LQLV 404
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSP 617
+G +L + G+ P +SP
Sbjct: 405 STDGRFKARL--PATDGQVKFPAWSP 428
>gi|320161703|ref|YP_004174928.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1]
gi|319995557|dbj|BAJ64328.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1]
Length = 645
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
+ RLT + PS+SPDG + F S + GY +L+I+D GE ++T+ P +
Sbjct: 123 LTRLTRTAWDEMHPSLSPDGNRLAFTSHQNGYWDLFILDLTTGET---QQITQSPEYEGA 179
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPDG+W+A+ + R+ ++YL N + + + P +SP G++I
Sbjct: 180 PTWSPDGQWLAYEAYRNE----QLDIYLQSLNDLSQPPIQLTDDPAADSDPAWSPGGRTI 235
Query: 623 VFTSDYGG 630
F S G
Sbjct: 236 AFVSTRTG 243
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 410 PLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STV 463
PL ++ +D PS SP G+R+AF + +++++ +Q+ + +
Sbjct: 122 PLTRLTRTAWDEMHPSLSPDGNRLAFTSHQNGYWDLFILDLTTGETQQITQSPEYEGAPT 181
Query: 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
W P + + Y A + ++DI +++D+ +LT + ++ P+ SP G+
Sbjct: 182 WSPDGQWLAYE------AYRNEQLDIYLQSLNDLSQPPI--QLTDDPAADSDPAWSPGGR 233
Query: 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
I F STRTG +++ + + E ++ + +D WS DG ++A+A+ +++
Sbjct: 234 TIAFVSTRTGDAEIWLANLDKPEERFVNISRDPRSADLNPVWSNDGRYLAYATRKES 290
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
++ HP L +L ++ A HP SPDG + FTS G Y
Sbjct: 111 IHLFAYHPKFLPLTRLTRT--AWDEMHPSLSPDGNRLAFTSHQNG--------------Y 154
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQC 691
++F + L + +++TQ+ +G P W P + + E +NEQ
Sbjct: 155 WDLFILDLTTGETQQITQSPEYEGAPTWSPDG-QWLAYEAYRNEQL 199
>gi|153003575|ref|YP_001377900.1| TolB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
gi|152027148|gb|ABS24916.1| TolB domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 437
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 38/239 (15%)
Query: 441 VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+ + + DG N R + + + W P AV+ TS + S E+ + ++
Sbjct: 184 LVMFDVDGKNPRVLLSERTILLAPCWRPDGRAVLLTS----YRSGRPELWLYTLADRGFR 239
Query: 499 GVSAVRRLTTNGKNNAFPSV-SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
++A+ NA+ V SPDG + F T ++++M+A+G G RLT P
Sbjct: 240 RLAAI--------PNAYGGVYSPDGTRVAFTITDRANSDVWVMNADG---TGAKRLTREP 288
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
D +WSPDG +AF SDR SG+ ++YL+ +G+ R+L G+ + P +SP
Sbjct: 289 ALDLSPSWSPDGTRLAFVSDR----SGTPQIYLMGADGSSPRRLTFQGNYNQT--PAWSP 342
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE-DGTPAWGP 675
G +I FT+ + ++F + + ++R+TQ+ + P W P
Sbjct: 343 RGDAIAFTA-------------RDERKVFDVFVVSPENGKIQRVTQDQGRTNEEPTWAP 388
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P + P G + + P +++ +D RR NA+ V+ P V +T
Sbjct: 207 PCWRPDGRAVLLTSYRSGRPELWLYTLADRGFRRLAAIPNAYGGVYSPDGTRVAFT---- 262
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
++ + D+ +N D + +RLT + PS SPDG + F S R+G +Y
Sbjct: 263 --ITDRANSDVWVMNADG----TGAKRLTREPALDLSPSWSPDGTRLAFVSDRSGTPQIY 316
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
+M G +G RLT +G ++ T WSP G+ IAF + RD F+++++ P
Sbjct: 317 LM---GADGSSPRRLTFQGNYNQTPA-WSPRGDAIAFTA-RDE--RKVFDVFVVSPENGK 369
Query: 598 LRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGIS 632
++++ Q GR N P ++P+G+ + +D G S
Sbjct: 370 IQRVTQ--DQGRTNEEPTWAPNGRLMALKTDRAGAS 403
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 27/182 (14%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
DVDG + R L + P PDG+ ++ S R+G L++ G RL
Sbjct: 188 DVDGKNP-RVLLSERTILLAPCWRPDGRAVLLTSYRSGRPELWLYTLAD---RGFRRLAA 243
Query: 556 GPWSDTMCNWSPDGEWIAFA-SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
P + +SPDG +AF +DR N ++++++ +GTG ++L + + + P
Sbjct: 244 IP-NAYGGVYSPDGTRVAFTITDRANS-----DVWVMNADGTGAKRLTREPALDLS--PS 295
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+SPDG + F SD G TP +I+ + DGS +RLT + TPAW
Sbjct: 296 WSPDGTRLAFVSDRSG-------TP-------QIYLMGADGSSPRRLTFQGNYNQTPAWS 341
Query: 675 PR 676
PR
Sbjct: 342 PR 343
>gi|126178726|ref|YP_001046691.1| peptidase S9B dipeptidylpeptidase IV subunit [Methanoculleus
marisnigri JR1]
gi|125861520|gb|ABN56709.1| peptidase S9B, dipeptidylpeptidase IV domain protein
[Methanoculleus marisnigri JR1]
Length = 395
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 64/292 (21%)
Query: 419 FDGSFPSFSPKGDRIAFVEFPGVY----VVNSDGSNRRQVYFKNAFSTV-----WDPVRE 469
FD S+P +SP G RIAFV GV+ V+ DG N V +++ W P +
Sbjct: 47 FD-SYPFWSPDGARIAFVSSDGVHAGIRVIERDGQNPVPVTDDRSWNLFTEFDPWSPDGK 105
Query: 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS-------PDG 522
+++ S G +D+ ++N D V RLT G+ P +S DG
Sbjct: 106 KLLFLSDG------GRGLDLWTMNPDGTGRV----RLTEGGRIVPIPGLSGYGADWNTDG 155
Query: 523 KWIVFRST---------------RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
K IV+ S RT +++IMDA+GG L T+G + W P
Sbjct: 156 KRIVYTSCLFDDAAIQEVNLSAIRT-EADIWIMDADGGNKKQLT--TDG--DARLPLWQP 210
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
G+ IA+ +DR SG+ E++ + +GTG ++ + S G + +SPDG I +
Sbjct: 211 QGDRIAYLADR----SGNREIWTMQSDGTGKTQV--TFSEGSVSEYSWSPDGTRIAYV-- 262
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIR 679
+++P P + I DGS ++LT + D +P W P R
Sbjct: 263 --------VASPPGTLPEFSLRIINSDGSGSEQLTTGN-RDTSPVWSPDGTR 305
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 420 DGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVY 473
D P + P+GDRIA++ ++ + SDG+ + QV F + W P + Y
Sbjct: 202 DARLPLWQPQGDRIAYLADRSGNREIWTMQSDGTGKTQVTFSEGSVSEYSWSPDGTRIAY 261
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
AS + S+ + + DG S +LTT G + P SPDG I FRS +
Sbjct: 262 V-----VASPPGTLPEFSLRIINSDG-SGSEQLTT-GNRDTSPVWSPDGTRIAFRS-ESR 313
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
+ L++M ++G GL L + M WSPDG I + D
Sbjct: 314 DRALWVMKSDGS---GLAPLGPDNPAYMMQQWSPDGRTIVVSDGND 356
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 88/334 (26%)
Query: 375 PFISPDSSRVGYHKCRGGST-----REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK 429
PF SPD +R+ + G DG N + P+ D + F +SP
Sbjct: 51 PFWSPDGARIAFVSSDGVHAGIRVIERDGQNPV-------PVTDDRSWNLFTEFDPWSPD 103
Query: 430 GDRIAFVEFPG----VYVVNSDGSNRRQVYFK---------NAFSTVWDPVREAVVYTSG 476
G ++ F+ G ++ +N DG+ R ++ + + W+ + +VYTS
Sbjct: 104 GKKLLFLSDGGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNTDGKRIVYTSC 163
Query: 477 GPEFASESSEVDIISINVD------DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
+ A+ EV++ +I + D DG + ++LTT+G + P P G I + +
Sbjct: 164 LFDDAA-IQEVNLSAIRTEADIWIMDADGGNK-KQLTTDG-DARLPLWQPQGDRIAYLAD 220
Query: 531 RTGYKNLYIMDAEG---------------------------------------------G 545
R+G + ++ M ++G
Sbjct: 221 RSGNREIWTMQSDGTGKTQVTFSEGSVSEYSWSPDGTRIAYVVASPPGTLPEFSLRIINS 280
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G G +LT G DT WSPDG IAF S+ S ++++ +G+GL L
Sbjct: 281 DGSGSEQLTTGN-RDTSPVWSPDGTRIAFRSE-----SRDRALWVMKSDGSGLAPLGPDN 334
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
A +SPDG++IV SD + A P+ P
Sbjct: 335 PAYMMQQ--WSPDGRTIVV-SDGNDLYAIPLEDP 365
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
V +LT + +++P SPDG I F S+ + + +++ +G +
Sbjct: 38 VVQLTNDSAFDSYPFWSPDGARIAFVSSDGVHAGIRVIERDGQNPVPVTDDRSWNLFTEF 97
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA----GRANHPY-FSP 617
WSPDG+ + F SD G +++ ++P+GTG +L + G G + + ++
Sbjct: 98 DPWSPDGKKLLFLSD----GGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNT 153
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
DGK IV+TS +A + +I+ + DG + K+LT + + P W P+
Sbjct: 154 DGKRIVYTSCLFDDAAIQEVNLSAIRTEADIWIMDADGGNKKQLTTDG-DARLPLWQPQG 212
Query: 678 IR 679
R
Sbjct: 213 DR 214
>gi|294817520|ref|ZP_06776162.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064]
gi|326446154|ref|ZP_08220888.1| hypothetical protein SclaA2_34047 [Streptomyces clavuligerus ATCC
27064]
gi|294322335|gb|EFG04470.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064]
Length = 1087
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
LT A P+ SPDG+ + F + R G +L+ + +G GL R TEGPW D W
Sbjct: 106 LTPADLEPARPTHSPDGELVAFSAYRDGNHHLWTVRPDG---TGLRRRTEGPWDDRGPAW 162
Query: 566 SPDGEWIAFASDR-DNPGSGS-FEMYLIHPNGTGLRKLIQ-SGSAGRAN-------HPYF 615
SPDG IAFAS+R +P +G+ + ++++ L +L SG G P +
Sbjct: 163 SPDGTRIAFASERGGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTW 222
Query: 616 SPDGKSIVFTSDYGGISA 633
SPDG I+F G +A
Sbjct: 223 SPDGTRILFVRGQGVTTA 240
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 93/240 (38%), Gaps = 47/240 (19%)
Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSN-----RRQVYFKNAFSTVWDPVREAVVYTSGG 477
P+ SP G RIAF +++ +++G R + VWDP +++Y
Sbjct: 381 LPALSPDGGRIAFAALNSLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLY---- 436
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRL--------TTNGKNNAFPSVSPDGKWIVFRS 529
DD DG+ +RRL T AFP++SPDG +
Sbjct: 437 ----------------ADDRDGLLGIRRLDLATGAEQTLAAGGRAFPALSPDGTRLACLD 480
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG---SGSF 586
T TG L + D G L G +WSPDG WIA DR+ +
Sbjct: 481 T-TG--RLLVRDLVTGAERVLATPLSGGGLPGRPSWSPDGRWIALC-DRNRISLRFREGY 536
Query: 587 EMYLIHPNGTGLRKL-----IQSGSAGRANHPYFSPDGK--SIVFTSDYGGISAEPISTP 639
+ I GTG +L S S A+ P +SPDG ++V S + P TP
Sbjct: 537 NLLRIVDAGTGADRLHTVAPHTSISDRHASGPVWSPDGAWLAVVVESALCLLPVAPDGTP 596
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-------YKNLYIMDAEGGEGYGLHRL 553
+ +RR T ++ P+ SPDG I F S R G Y+ ++++D G L RL
Sbjct: 145 TGLRRRTEGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYR-IHVLDLRTGN---LTRL 200
Query: 554 T----------EGPWSDTMCNWSPDGEWIAFASDRD-----NPGSGSFEMYLIHPNGTGL 598
T +GPW D WSPDG I F + P + + + GTG
Sbjct: 201 TGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDARTVAAVSATGTGA 260
Query: 599 RKLIQSGSA-GRANHPYFSPDGKSIVF 624
+ +G+A G+ P +PDG+ + +
Sbjct: 261 VTTVHTGTADGQIIAPALAPDGRRLAY 287
>gi|227823308|ref|YP_002827280.1| translocation protein TolB [Sinorhizobium fredii NGR234]
gi|227342309|gb|ACP26527.1| TolB protein precursor [Sinorhizobium fredii NGR234]
Length = 457
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG IVF S R G + LY+M G +G G R++ G S + WSP G+ IAF
Sbjct: 318 PSYSPDGARIVFESDRGGKQQLYVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFT 374
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + ++ P+G+G R L + G N P ++P+G+ ++F G
Sbjct: 375 KQ----SGGKFSIGVMKPDGSGERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP 426
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I L G + +++ F PAW P
Sbjct: 427 ------------QLYSIDLTGYNEQQIQTQGFAS-DPAWSP 454
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG +A R LT + P SP+ + I + S +Y++ E G+
Sbjct: 206 QLAIMDQDGFNA-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQ---R 261
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SPDG+ + + ++ G+ +Y + +L + +
Sbjct: 262 EVVGNFPGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRLTNTNAID-- 315
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 316 TSPSYSPDGARIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGS 358
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 359 YSTPVWSPR 367
>gi|82543167|ref|YP_407114.1| translocation protein TolB [Shigella boydii Sb227]
gi|119371060|sp|Q324H2.1|TOLB_SHIBS RecName: Full=Protein TolB; Flags: Precursor
gi|81244578|gb|ABB65286.1| TolB [Shigella boydii Sb227]
Length = 430
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPHPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDL----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 352 FDLVKNKFIELTRFVSPKTHH--LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
++L + + +FV ++ H ++P SPD S++ Y T E G + L+++ + +
Sbjct: 180 YELRVSDYDGYNQFVVHRSPHPLMSPAWSPDGSKLAY------VTFESGRSALVIQTLAN 233
Query: 410 -PLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST-- 462
+ ++ F P+FSP G ++AF +YV++ RQV + +T
Sbjct: 234 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP 293
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P + + +TS + + +N++ A +R+T G N VS DG
Sbjct: 294 TWFPDSQNLAFTS------DLAGRPQVYKVNING----GAPQRITWEGSQNQDADVSSDG 343
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
K++V S+ G +++ D G G+ L+ + D + +P+G + ++S + G
Sbjct: 344 KFMVMVSSNGGQQHIAKQDLATG---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---G 396
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
GS + L+ +G +L + G+ P +SP
Sbjct: 397 MGSV-LNLVSTDGRFKARL--PATDGQVKFPAWSP 428
>gi|383481343|ref|YP_005390258.1| translocation protein TolB [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933682|gb|AFC72185.1| translocation protein TolB [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 444
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAQNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+FT
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFTK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSRAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRAL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAQN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|167580763|ref|ZP_02373637.1| translocation protein TolB [Burkholderia thailandensis TXDOH]
Length = 433
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A +R P Y+ + L+D VK + + + KT H + +I
Sbjct: 96 GANAFVAGSVSREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 156 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ S +RRLT + + P SPDGKWI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSSSG----SGLRRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
A G R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AGGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+Q+G+A R P F+ +G+ I++ + GG S
Sbjct: 364 LQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 400
>gi|149927732|ref|ZP_01915984.1| translocation protein TolB precursor [Limnobacter sp. MED105]
gi|149823558|gb|EDM82788.1| translocation protein TolB precursor [Limnobacter sp. MED105]
Length = 445
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEFPG---VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGP 478
P++SP G ++A+V F V V++ + RR+ FK + S A ++S G
Sbjct: 218 PAWSPDGTQLAYVSFETRKPVVFVHTLATGRRKALANFKGSNS--------APAWSSNGQ 269
Query: 479 EFA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ A ++ I S+N D S++ RLT+ G N P+ S DG+ I F S R G
Sbjct: 270 QLAVVLTKDGGSQIFSMNADG----SSLNRLTSTGGINTEPAYSHDGRSIYFTSDRGGGP 325
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M GG+ R+T EG + + SPD + + + + RD G F + +
Sbjct: 326 QIYRMSTNGGDA---TRVTFEGGY-NISPRISPDDKTLTYVTRRD----GQFRIAALDLA 377
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G G L+ + GR P F+P+G+ I++ + GG G + + D
Sbjct: 378 G-GTEMLLT--NTGRDESPSFAPNGRYILYATKSGG--------------KGTLAVVSKD 420
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G L+ + + P WGP
Sbjct: 421 GRIKYTLSSSGADISEPTWGP 441
>gi|424798678|ref|ZP_18224220.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 696]
gi|423234399|emb|CCK06090.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 696]
Length = 430
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S G I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--ISSDGKFMVMVSSNSGAQ--------------NIAKLDLATGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|407775304|ref|ZP_11122599.1| translocation protein TolB [Thalassospira profundimaris WP0211]
gi|407281729|gb|EKF07290.1| translocation protein TolB [Thalassospira profundimaris WP0211]
Length = 456
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 41/270 (15%)
Query: 417 FRFDGSF----PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDP 466
F DG F P FSP + ++ + P VYV++ D + + F+ + P
Sbjct: 214 FLSDGRFLVLNPRFSPTAQEVVYMSYFNDKPRVYVLDIDTGELELLGDFPGMTFAPRFAP 273
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
+VV + + +SE+ + + + R+LT + + PS SPDG I
Sbjct: 274 DGNSVVMS----QALDGNSEIYGLDLRTREK------RQLTRHPAVDTSPSYSPDGSRIA 323
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F S R+G + LY+M+A+GG G+ R++ G WSP G+ IAF G +
Sbjct: 324 FNSDRSGAQQLYVMNADGG---GVQRISFGGGRYATPVWSPRGDLIAFTKSE----GGRY 376
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
+ ++ P+G+G R L + P ++P+G+ +++ + T +Y+
Sbjct: 377 YIGVMRPDGSGERLLAE---GYLVEGPTWAPNGRVLMYYRQHPSRDG----TKDRYR--- 426
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGT-PAWGP 675
++ I L G + + + + DG+ PAW P
Sbjct: 427 -LYSIDLTGYNEREIVTPA--DGSDPAWSP 453
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 24/198 (12%)
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLY 538
+ SES D + + +D A R ++G+ P SP + +V+ S +Y
Sbjct: 188 YVSESGPADNRTKRLAIMDQDGANHRFLSDGRFLVLNPRFSPTAQEVVYMSYFNDKPRVY 247
Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
++D + GE L L + P ++PDG + + D G+ E+Y +
Sbjct: 248 VLDIDTGE---LELLGDFPGMTFAPRFAPDGNSVVMSQALD----GNSEIYGLDLRTREK 300
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
R+L + + P +SPDG I F SD G +++ + DG +
Sbjct: 301 RQLTRHPAVD--TSPSYSPDGSRIAFNSDRSGAQ--------------QLYVMNADGGGV 344
Query: 659 KRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 345 QRISFGGGRYATPVWSPR 362
>gi|262194812|ref|YP_003266021.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
gi|262078159|gb|ACY14128.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Length = 969
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 61/303 (20%)
Query: 419 FDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475
+D + P SP G IAF E G+YV+ G + R+V + A + W P ++ Y +
Sbjct: 483 YDDTEPVLSPDGAHIAFRSTREGGGIYVMEVTGESVRRVVDEGANPS-WSPDGRSLAYAT 541
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-- 533
+ S ++ +I++ ++ RR + P+ SP G I + G
Sbjct: 542 RSTLLPNSRSPGELWTIDL------ASGRRRRVADADATQPAWSPGGHRIAYWGLPEGGS 595
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
++++ + AEGG + + W+ WSPDG ++ FASDR GS M+ +
Sbjct: 596 QRDIWTVSAEGGPPVAVTDDGDLDWNPV---WSPDGRYLYFASDR----GGSTNMWRVAI 648
Query: 594 NG-TGLRKLIQ---SGSAGRANHPYFSPDGKSIV--------------FTSDYGGISAEP 635
+ TG R+ + + A H FS DGK +V F D G + P
Sbjct: 649 DERTGERRGAPEPVTTPSAYAAHLRFSSDGKHMVYADIRSASNLQRIAFDPDAGAVVGAP 708
Query: 636 ---------ISTPHQYQPYGE--------------IFKIKLDGSDLKRLTQNSFEDGTPA 672
++ P P GE + +++DGS+ +RLT + + D TP
Sbjct: 709 TWVTGGSLDLNAP-DVSPDGEWLAMTVTDEANREDLLVMRVDGSERRRLTDDVYNDRTPR 767
Query: 673 WGP 675
W P
Sbjct: 768 WAP 770
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
+LT G FPS+ PD +W++F G ++Y G + L + + DT
Sbjct: 432 QLTYRGGQEVFPSLGPDARWVIFAGRDGGDWDIYYQRIGGSNAFNL--TADSAYDDTEPV 489
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
SPDG IAF S R+ G +Y++ G +R+++ G+ +P +SPDG+S+ +
Sbjct: 490 LSPDGAHIAFRSTREGGG-----IYVMEVTGESVRRVVDEGA-----NPSWSPDGRSLAY 539
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT-PAWGP 675
+ P+ P GE++ I L +R+ D T PAW P
Sbjct: 540 AT-------RSTLLPNSRSP-GELWTIDLASGRRRRVAD---ADATQPAWSP 580
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 127/314 (40%), Gaps = 83/314 (26%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFR------FDGSF 423
NP SPD + Y LL N +SP D++ R D +
Sbjct: 527 NPSWSPDGRSLAY-----------ATRSTLLPNSRSPGELWTIDLASGRRRRVADADATQ 575
Query: 424 PSFSPKGDRIAFVEFP------GVYVVNSDGS-------------------NRRQVYF-- 456
P++SP G RIA+ P ++ V+++G + R +YF
Sbjct: 576 PAWSPGGHRIAYWGLPEGGSQRDIWTVSAEGGPPVAVTDDGDLDWNPVWSPDGRYLYFAS 635
Query: 457 -KNAFSTVWD-PVREAVVYTSGGPE-------------FASE-----------SSEVDII 490
+ + +W + E G PE F+S+ +S + I
Sbjct: 636 DRGGSTNMWRVAIDERTGERRGAPEPVTTPSAYAAHLRFSSDGKHMVYADIRSASNLQRI 695
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST-RTGYKNLYIMDAEGGEGYG 549
+ + D V A +T + P VSPDG+W+ T ++L +M +G E
Sbjct: 696 AFDPDAGAVVGAPTWVTGGSLDLNAPDVSPDGEWLAMTVTDEANREDLLVMRVDGSE--- 752
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RLT+ ++D W+PDG IAF SDR SG +E++ + P+G L +L + +
Sbjct: 753 RRRLTDDVYNDRTPRWAPDGSRIAFYSDR----SGKYELWAVDPHGNRLEQLTFT-TGDS 807
Query: 610 ANHPYFSPDGKSIV 623
+P +SPDG ++
Sbjct: 808 VYYPVWSPDGSRVL 821
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 33/185 (17%)
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
+ G +A + ++ P +SPDG I FRSTR G +Y+M+ G + R+ +
Sbjct: 469 IGGSNAFNLTADSAYDDTEPVLSPDGAHIAFRSTREG-GGIYVMEV---TGESVRRVVD- 523
Query: 557 PWSDTMCNWSPDGEWIAFAS------DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+WSPDG +A+A+ + +PG E++ I +G R+ + A
Sbjct: 524 --EGANPSWSPDGRSLAYATRSTLLPNSRSPG----ELWTID-LASGRRRRVADAD---A 573
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SP G I + G S +I+ + +G +T + D
Sbjct: 574 TQPAWSPGGHRIAYWGLPEGGSQR------------DIWTVSAEGGPPVAVTDDGDLDWN 621
Query: 671 PAWGP 675
P W P
Sbjct: 622 PVWSP 626
>gi|452210913|ref|YP_007491027.1| Cell surface protein [Methanosarcina mazei Tuc01]
gi|452100815|gb|AGF97755.1| Cell surface protein [Methanosarcina mazei Tuc01]
Length = 888
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)
Query: 378 SPDSSRVGYHKC------RGGSTREDGNNQLLLENIK--SPL---PDISLFRFDGSFPSF 426
SPD SR+ Y R + DG+N+ ++ + S L PD S F+ ++
Sbjct: 154 SPDGSRIAYISSDHNGFDRLVTLNPDGSNEQIVASFAEISALAWAPDSSGMAFNAAYSED 213
Query: 427 SPKGDRIAFVEFPG-VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
G +A +E V++V G R+Q+ ++ S VW P ++Y+S +E+
Sbjct: 214 GQTGIYLADLESSEPVFLVR--GEIRQQI--QSWQSEVWSPDGSRILYSS------NENG 263
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
DI S+N D + + +LT + + P SPDG I+F S RTG+ +++IM + G
Sbjct: 264 NSDIYSVNTDGSEKI----QLTDDNSKDYSPCFSPDGSKIIFISDRTGHSSIWIMSSNGD 319
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
+ LTEG +W+P+G+ IAF+SD +
Sbjct: 320 KE---EELTEGFEGIHDFSWNPNGQKIAFSSDSN 350
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 62/251 (24%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNR-----------RQVYFKNAFS 461
F +D +SP G +I + +Y++NSDGS+ ++ Y +N FS
Sbjct: 88 FYYDEGNHVWSPDGMKILYSYEAADDFYLYIMNSDGSDNNSDGSDNFELVKKSYGRN-FS 146
Query: 462 TV----WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN---- 513
+ W P + Y S D +G + L +G N
Sbjct: 147 GISGCAWSPDGSRIAYISS-------------------DHNGFDRLVTLNPDGSNEQIVA 187
Query: 514 AFPSVS-----PDGKWIVFRS--TRTGYKNLYIMDAEGGEGY----GLHRLTEGPWSDTM 562
+F +S PD + F + + G +Y+ D E E G R W +
Sbjct: 188 SFAEISALAWAPDSSGMAFNAAYSEDGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEV 247
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPDG I ++S+ + G+ ++Y ++ +G+ +L S + P FSPDG I
Sbjct: 248 --WSPDGSRILYSSNEN----GNSDIYSVNTDGSEKIQLTDDNS--KDYSPCFSPDGSKI 299
Query: 623 VFTSDYGGISA 633
+F SD G S+
Sbjct: 300 IFISDRTGHSS 310
>gi|56479691|ref|NP_706494.2| translocation protein TolB [Shigella flexneri 2a str. 301]
gi|32699693|sp|Q83MM7.2|TOLB_SHIFL RecName: Full=Protein TolB; Flags: Precursor
gi|56383242|gb|AAN42201.2| periplasmic protein [Shigella flexneri 2a str. 301]
Length = 430
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPHPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDL----AGRPQVYKVNINGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNGG 354
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 352 FDLVKNKFIELTRFVSPKTHH--LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409
++L + + +FV ++ H ++P SPD S++ Y T E G + L+++ + +
Sbjct: 180 YELRVSDYDGYNQFVVHRSPHPLMSPAWSPDGSKLAY------VTFESGRSALVIQTLAN 233
Query: 410 -PLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST-- 462
+ ++ F P+FSP G ++AF +YV++ RQV + +T
Sbjct: 234 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP 293
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P + + +TS + + +N++ A +R+T G N VS DG
Sbjct: 294 TWFPDSQNLAFTS------DLAGRPQVYKVNING----GAPQRITWEGSQNQDADVSSDG 343
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
K++V S+ G +++ D G G+ L+ + D + +P+G + ++S + G
Sbjct: 344 KFMVMVSSNGGQQHIAKQDLATG---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---G 396
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
GS + L+ +G +L + G+ P +SP
Sbjct: 397 MGSV-LNLVSTDGRFKARL--PATDGQVKFPAWSP 428
>gi|383763313|ref|YP_005442295.1| putative serine/threonine protein kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381383581|dbj|BAM00398.1| putative serine/threonine protein kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 916
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 421 GSFPSFSPKGDRIAFVEF------PGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVY 473
G P + P G+RI F F PG+Y++N DGSNR+++ N W P AVV+
Sbjct: 771 GKDPIWEPGGERILFNGFDERGETPGLYLINVDGSNRQRLTDNGNDLRPAWSPDGRAVVF 830
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
S + + +D+ +++ D ++ +LT + + P++SPD + +VF S R G
Sbjct: 831 MS------TRNGNMDVYRLSLQD----GSLVQLTNDPAQDGLPAISPDSRLVVFASDRGG 880
Query: 534 YKNLYIMDAEGG 545
LY+ +GG
Sbjct: 881 VWRLYVTPIDGG 892
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 50/171 (29%)
Query: 504 RRLTTNGKN--NAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGE----GYG------ 549
RR+T ++ +A PS SPDG +V+ STRT G +Y+ GE G+G
Sbjct: 718 RRITQAAEDARDAPPSWSPDGAKLVYSSTRTSPGRPRIYVRSLSTGEEIDLGFGKDPIWE 777
Query: 550 -----------------------------LHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
RLT+ +D WSPDG + F S R+
Sbjct: 778 PGGERILFNGFDERGETPGLYLINVDGSNRQRLTDN-GNDLRPAWSPDGRAVVFMSTRN- 835
Query: 581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
G+ ++Y + L +L + + P SPD + +VF SD GG+
Sbjct: 836 ---GNMDVYRLSLQDGSLVQL--TNDPAQDGLPAISPDSRLVVFASDRGGV 881
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 102/267 (38%), Gaps = 66/267 (24%)
Query: 453 QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512
QV + + + +A+ +G ++++ + I V GVS + L +G
Sbjct: 623 QVEVECTNAQALASIEKALAAGAGRILYSTQEGDRYNIYAAAAQVGGVSTL--LIADGAQ 680
Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMD--AEGGEGYGLHRLTEGP--WSDTMCNWSPD 568
+ P G + F ST + + + D A R+T+ D +WSPD
Sbjct: 681 VSAPYA---GALLAFHSTSSLEPGIALFDLGASLSPTERTRRITQAAEDARDAPPSWSPD 737
Query: 569 GEWIAFASDRDNPGS---------------------------------GSFE-------M 588
G + ++S R +PG F+ +
Sbjct: 738 GAKLVYSSTRTSPGRPRIYVRSLSTGEEIDLGFGKDPIWEPGGERILFNGFDERGETPGL 797
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
YLI+ +G+ ++L +G+ R P +SPDG+++VF S G ++
Sbjct: 798 YLINVDGSNRQRLTDNGNDLR---PAWSPDGRAVVFMSTRNG--------------NMDV 840
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ L L +LT + +DG PA P
Sbjct: 841 YRLSLQDGSLVQLTNDPAQDGLPAISP 867
>gi|301632611|ref|XP_002945375.1| PREDICTED: protein tolB-like, partial [Xenopus (Silurana)
tropicalis]
Length = 554
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 30/238 (12%)
Query: 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVY 455
NQ L + + D + G FS R+ +V G ++V ++DG N +
Sbjct: 111 NQGDLRLVAHRIADFVYEKLTGERGVFST---RVTYVTKAGGRYSLWVADADGENAQAAL 167
Query: 456 FKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-N 512
S W P G + A S E + V DV S RRL N + +
Sbjct: 168 SSTEPIISPAWAP---------NGTQLAYVSFESRKPVVYVHDV--ASGRRRLIANFRGS 216
Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
N+ P+ SPDG+ + TR G LY +DA GGE RL + DT +S DG I
Sbjct: 217 NSAPAWSPDGRQLAVTLTRDGSSQLYTIDANGGEP---RRLMQSSGIDTEPVFSGDGRTI 273
Query: 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
F SDR G+ ++Y + G ++ SGS + P SPDG+ + + S GG
Sbjct: 274 YFVSDR----GGAPQIYKVGATGGNAERVTFSGSYNIS--PSVSPDGRWLAYISRVGG 325
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
S+ V D DG +A L++ + P+ +P+G + + S + +Y+ D G
Sbjct: 152 SLWVADADGENAQAALSST-EPIISPAWAPNGTQLAYVSFESRKPVVYVHDVASGR---- 206
Query: 551 HRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL S++ WSPDG +A RD GS ++Y I NG R+L+QS +G
Sbjct: 207 RRLIANFRGSNSAPAWSPDGRQLAVTLTRD----GSSQLYTIDANGGEPRRLMQS--SGI 260
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
P FS DG++I F SD GG +I+K+ G + +R+T
Sbjct: 261 DTEPVFSGDGRTIYFVSDRGGAP--------------QIYKVGATGGNAERVT 299
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 44/195 (22%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDPVREAVVYT--- 474
P+++P G ++A+V F P VYV + RR + F+ + S W P + T
Sbjct: 176 PAWAPNGTQLAYVSFESRKPVVYVHDVASGRRRLIANFRGSNSAPAWSPDGRQLAVTLTR 235
Query: 475 ------------SGGPEFASESSEVDIISIN---------VDDVDGVSAV---------- 503
G P +SS +D + V D G +
Sbjct: 236 DGSSQLYTIDANGGEPRRLMQSSGIDTEPVFSGDGRTIYFVSDRGGAPQIYKVGATGGNA 295
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
R+T +G N PSVSPDG+W+ + S G L+ MD G G +D
Sbjct: 296 ERVTFSGSYNISPSVSPDGRWLAYISRVGGAFKLHAMDL----GTGAVNAITDTTADENP 351
Query: 564 NWSPDGEWIAFASDR 578
+++P+ I +A+ +
Sbjct: 352 SFAPNSRLIVYATQQ 366
>gi|254387973|ref|ZP_05003210.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064]
gi|197701697|gb|EDY47509.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064]
Length = 1069
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
LT A P+ SPDG+ + F + R G +L+ + +G GL R TEGPW D W
Sbjct: 88 LTPADLEPARPTHSPDGELVAFSAYRDGNHHLWTVRPDG---TGLRRRTEGPWDDRGPAW 144
Query: 566 SPDGEWIAFASDR-DNPGSGS-FEMYLIHPNGTGLRKLIQ-SGSAGRAN-------HPYF 615
SPDG IAFAS+R +P +G+ + ++++ L +L SG G P +
Sbjct: 145 SPDGTRIAFASERGGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTW 204
Query: 616 SPDGKSIVFTSDYGGISA 633
SPDG I+F G +A
Sbjct: 205 SPDGTRILFVRGQGVTTA 222
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 93/240 (38%), Gaps = 47/240 (19%)
Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSN-----RRQVYFKNAFSTVWDPVREAVVYTSGG 477
P+ SP G RIAF +++ +++G R + VWDP +++Y
Sbjct: 363 LPALSPDGGRIAFAALNSLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLY---- 418
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRL--------TTNGKNNAFPSVSPDGKWIVFRS 529
DD DG+ +RRL T AFP++SPDG +
Sbjct: 419 ----------------ADDRDGLLGIRRLDLATGAEQTLAAGGRAFPALSPDGTRLACLD 462
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG---SGSF 586
T TG L + D G L G +WSPDG WIA DR+ +
Sbjct: 463 T-TG--RLLVRDLVTGAERVLATPLSGGGLPGRPSWSPDGRWIALC-DRNRISLRFREGY 518
Query: 587 EMYLIHPNGTGLRKL-----IQSGSAGRANHPYFSPDGK--SIVFTSDYGGISAEPISTP 639
+ I GTG +L S S A+ P +SPDG ++V S + P TP
Sbjct: 519 NLLRIVDAGTGADRLHTVAPHTSISDRHASGPVWSPDGAWLAVVVESALCLLPVAPDGTP 578
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-------YKNLYIMDAEGGEGYGLHRL 553
+ +RR T ++ P+ SPDG I F S R G Y+ ++++D G L RL
Sbjct: 127 TGLRRRTEGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYR-IHVLDLRTGN---LTRL 182
Query: 554 T----------EGPWSDTMCNWSPDGEWIAFASDRD-----NPGSGSFEMYLIHPNGTGL 598
T +GPW D WSPDG I F + P + + + GTG
Sbjct: 183 TGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDARTVAAVSATGTGA 242
Query: 599 RKLIQSGSA-GRANHPYFSPDGKSIVF 624
+ +G+A G+ P +PDG+ + +
Sbjct: 243 VTTVHTGTADGQIIAPALAPDGRRLAY 269
>gi|384262174|ref|YP_005417360.1| protein tolB [Rhodospirillum photometricum DSM 122]
gi|378403274|emb|CCG08390.1| Protein tolB [Rhodospirillum photometricum DSM 122]
Length = 446
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
P FSP I ++ + P VY+ N + S RR++ + F+ + P V+ S
Sbjct: 220 PRFSPTAQEITYLSYYNGVPRVYLFNIE-SGRRELLGDFPGMTFAPRFSPDGNKVIM-SM 277
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ +E E+D+ + RLT + + PS +PD + I F S R G +
Sbjct: 278 AKDGNTEIYEMDLRT---------RKATRLTNHPAIDTSPSYAPDARQITFNSDRGGSQQ 328
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A+G G+ R++ G S WSP G+ IAF + G F + ++ P+G+
Sbjct: 329 LYVMSADGS---GVQRISFGDGSYATPVWSPRGDLIAFTKMK----GGRFFIGVMRPDGS 381
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G K++ G P ++P+G+ + + + G S P ++ I L G
Sbjct: 382 G-EKILSEGFL--VEGPSWAPNGRVLTYFREERG------SRPG-------LYTIDLTG- 424
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+R+ S E PAW P
Sbjct: 425 HAERMIPTSTEASDPAWSP 443
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 42/194 (21%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + R L+T P SP + I + S G +Y+ + E G
Sbjct: 197 LAIMDQDGANQ-RTLSTGEAMVLTPRFSPTAQEITYLSYYNGVPRVYLFNIESGR---RE 252
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
L + P +SPDG + + +D G+ E+Y + +L N
Sbjct: 253 LLGDFPGMTFAPRFSPDGNKVIMSMAKD----GNTEIYEMDLRTRKATRL--------TN 300
Query: 612 HPY------FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
HP ++PD + I F SD GG +++ + DGS ++R+ S
Sbjct: 301 HPAIDTSPSYAPDARQITFNSDRGGSQ--------------QLYVMSADGSGVQRI---S 343
Query: 666 FEDG---TPAWGPR 676
F DG TP W PR
Sbjct: 344 FGDGSYATPVWSPR 357
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 282 FHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATR 340
F ++E ++S Y + P+ L + ES + + PG+ F P SP NK I +
Sbjct: 222 FSPTAQEITYLSYYNGV-PRVYLFNIESGRRELLGDFPGM-TFAPRFSPDGNKVIMSMAK 279
Query: 341 RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400
+ I DL K LT + T +P +PD+ ++ ++ RGGS
Sbjct: 280 DGNT---EIYEMDLRTRKATRLTNHPAIDT---SPSYAPDARQITFNSDRGGS------Q 327
Query: 401 QL-LLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAFVEFPG----VYVVNSDGSNRR 452
QL ++ S + IS DGS+ P +SP+GD IAF + G + V+ DGS +
Sbjct: 328 QLYVMSADGSGVQRISF--GDGSYATPVWSPRGDLIAFTKMKGGRFFIGVMRPDGSGEK 384
>gi|397167554|ref|ZP_10490996.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
radicincitans DSM 16656]
gi|396090912|gb|EJI88480.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
radicincitans DSM 16656]
Length = 430
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 120/279 (43%), Gaps = 82/279 (29%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG NQ L+ KSP P +S P++SP G R+A+V F
Sbjct: 188 DGYNQFLVH--KSPQPLMS--------PAWSPDGSRLAYVTF------------------ 219
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516
+ R A+V + A+ S +R++ + ++N P
Sbjct: 220 --------ESGRSALVIQT----LANAS------------------IRQVASFPRHNGAP 249
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+ SPDG + F ++TG N+Y+MD G+ + ++T+G ++T W PD + +AF S
Sbjct: 250 AFSPDGSKLAFALSKTGSLNIYVMDIGSGQ---IRQVTDGRSNNTEPTWFPDSQTLAFTS 306
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
D+ +G ++Y + NG +++ GS + S DGK +V S GG
Sbjct: 307 DQ----AGRPQVYKVGINGGAAQRISWQGS--QNQDADVSSDGKFMVMVSSDGG------ 354
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+ I K L ++ LT ++F D TP+ P
Sbjct: 355 ---QQH-----IAKQDLAAGGVQVLT-STFLDETPSLAP 384
>gi|295689246|ref|YP_003592939.1| amidohydrolase [Caulobacter segnis ATCC 21756]
gi|295431149|gb|ADG10321.1| amidohydrolase [Caulobacter segnis ATCC 21756]
Length = 1055
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+T N +VSPDG+ + F Y L+++ EGG RLT+ + +W
Sbjct: 49 VTATEGTNICATVSPDGRTVAFDV----YAMLWLVPIEGGPA---RRLTDEIYEIAQPDW 101
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG +AF S RD G+F ++ I +G GL + ++ A P +SPDGK+I F+
Sbjct: 102 SPDGSTLAFQSYRD----GNFHVWTIGADGRGLMQ--RTKGAFDCREPRWSPDGKTIAFS 155
Query: 626 SDYGG 630
SD GG
Sbjct: 156 SDRGG 160
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
RRLT A P SPDG + F+S R G +++ + G +G GL + T+G +
Sbjct: 86 ARRLTDEIYEIAQPDWSPDGSTLAFQSYRDGNFHVWTI---GADGRGLMQRTKGAFDCRE 142
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
WSPDG+ IAF+SDR G + ++L+ + S G P +SPDGKS+
Sbjct: 143 PRWSPDGKTIAFSSDR----GGRYGVHLLDVASGAITPF--STGPGDEFEPSWSPDGKSV 196
Query: 623 VFTSD 627
VFT D
Sbjct: 197 VFTVD 201
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 30/160 (18%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P++SPDG+ +VFR+ +LY++D GG L + + WSPDG+ +A++
Sbjct: 336 PALSPDGRQVVFRA----LNDLYLLDIGGGPATAL---IKDAFYKVDPAWSPDGKTLAYS 388
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
+D+ G +++L R+L + G A +S DGKSI F + GG+
Sbjct: 389 TDK----GGKLDIWLRDTASGESRQLTRFD--GAAVSSAWSRDGKSIAFLNQNGGLFVVD 442
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ + YG++ +E G P WGP
Sbjct: 443 VASGQTRRVYGDL-----------------WEPGKPTWGP 465
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SPDGK I F S R G ++++D G + + GP + +WSPDG+ + F
Sbjct: 143 PRWSPDGKTIAFSSDRGGRYGVHLLDVASG---AITPFSTGPGDEFEPSWSPDGKSVVFT 199
Query: 576 SDRDNPGSGSFEMYLIHPNGT-GLRKLIQ--SGSAGRAN-----HPYFSPDGKSIVFTS 626
D+ I G G R+ + SA R N P F+PDG+ +VFT+
Sbjct: 200 VDK----------VRIDVQGLDGARRTVAKVKPSADRFNAASLASPAFTPDGRDVVFTA 248
>gi|377578088|ref|ZP_09807067.1| TolB protein [Escherichia hermannii NBRC 105704]
gi|377540413|dbj|GAB52232.1| TolB protein [Escherichia hermannii NBRC 105704]
Length = 430
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y + NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQTLAYTSDQ----AGRPQVYKVSVNGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + F DGK +V S GG
Sbjct: 329 WEGSQNQDADVSF--DGKFMVMVSSNGG 354
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + YTS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQTLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ ++V+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVSVNG----GAPQRVTWEGSQNQDADVSFDGKFMVMVSSNGGAQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQTLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|148555048|ref|YP_001262630.1| translocation protein TolB [Sphingomonas wittichii RW1]
gi|166229992|sp|A5V876.1|TOLB_SPHWW RecName: Full=Protein TolB; Flags: Precursor
gi|148500238|gb|ABQ68492.1| Tol-Pal system beta propeller repeat, TolB [Sphingomonas wittichii
RW1]
Length = 439
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 76/299 (25%)
Query: 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVN-SDGSN 450
+DG N L N ++ I L P F+P I ++ + VYV + GS
Sbjct: 195 QDGANHRFLTNGQT----IVLT------PRFAPNQQTITYMSYTNNRARVYVYDIGSGSQ 244
Query: 451 RRQVYFKN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
R V N F+ + P +V++ + DI ++ G +RLTT+
Sbjct: 245 RLVVDQPNMTFAPRFSPDGRTIVFS------MAVGGNTDIYRVSA----GGGTPQRLTTS 294
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ S SPDG IVF S R+G + LY+M+A+G +R++ G WSP G
Sbjct: 295 PGIDTGASYSPDGSKIVFESDRSGTQQLYVMNADGSN---QNRISFGSGRYGSAAWSPRG 351
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF----- 624
+ IAF G F + +++ +G+G K++ +G + P +SP+G+ I+F
Sbjct: 352 DLIAFTKI-----GGGFNVGIMNIDGSG-EKILTNGW--QDEGPSWSPNGRVIMFFRTAQ 403
Query: 625 --------TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ D G++ P+ TP LDGSD PAWGP
Sbjct: 404 GSGKADLWSVDLTGVNERPVPTP-------------LDGSD-------------PAWGP 436
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
VVY S E +++ + ++I D DG A R TNG+ P +P+ + I + S
Sbjct: 174 VVYVS---ETGPKTNRIKRLAIM--DQDG--ANHRFLTNGQTIVLTPRFAPNQQTITYMS 226
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588
+Y+ D G G RL + P +SPDG I F+ G+ ++
Sbjct: 227 YTNNRARVYVYDI----GSGSQRLVVDQPNMTFAPRFSPDGRTIVFSMAV----GGNTDI 278
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
Y + G ++L + S G +SPDG IVF SD G ++
Sbjct: 279 YRVSAGGGTPQRL--TTSPGIDTGASYSPDGSKIVFESDRSGTQ--------------QL 322
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ + DGS+ R++ S G+ AW PR
Sbjct: 323 YVMNADGSNQNRISFGSGRYGSAAWSPR 350
>gi|374595851|ref|ZP_09668855.1| peptidase S41 [Gillisia limnaea DSM 15749]
gi|373870490|gb|EHQ02488.1| peptidase S41 [Gillisia limnaea DSM 15749]
Length = 1109
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 16/143 (11%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
R LT+N P SPDGKWI F G ++YI+ AEGG+ RLT P +D +
Sbjct: 64 ARHLTSNEGAETNPHFSPDGKWIAFTGQYDGNVDVYIIPAEGGQP---KRLTWHPGNDEV 120
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
W+PDG+ + F+S R+ + + ++Y I NG G+ I+ RA + S +G +
Sbjct: 121 TGWTPDGKSVLFSSGREGYPTAASKLYTIATNG-GMPVAIK---VPRAANGELSEEGNFL 176
Query: 623 VFT---------SDYGGISAEPI 636
+T +Y G A+PI
Sbjct: 177 AYTPISFWDPEWRNYRGGQAQPI 199
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 36/218 (16%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST---VWDPVREAVVYTSGGPEFA 481
S SP G R F ++ V+ + N R + + + VW P + + F+
Sbjct: 321 SLSPTGQRALFEYRGEIFTVSKEEGNWRNITNSSGAADRFPVWSPDGSKIAW------FS 374
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
S E ++ + + +G+ +R + F P SP+GK+I F T T Y NL+ M
Sbjct: 375 DASGEYQLM---IGNQEGLGDIRSIKIPDPTFFFKPEWSPNGKYIAF--TDTDY-NLWYM 428
Query: 541 DAEGG-------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
D E EGY + P WSPD +WIA+ DN F+ +H
Sbjct: 429 DVESEKITKADVEGYAHPNRSLNP------VWSPDSQWIAYVRIMDN----MFKAVKVHN 478
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYG 629
TG + + S A P + GK + F T++YG
Sbjct: 479 VETGKNHQL-TNSMADAISPVWDASGKYLYFLATTNYG 515
>gi|114319404|ref|YP_741087.1| translocation protein TolB [Alkalilimnicola ehrlichii MLHE-1]
gi|122941253|sp|Q0AC40.1|TOLB_ALHEH RecName: Full=Protein TolB; Flags: Precursor
gi|114225798|gb|ABI55597.1| TolB, N-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 428
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 33/242 (13%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVN-SDGSNR 451
D + Q E ++S P +S P++SP+ DR+A+V F G +YV N G
Sbjct: 187 DADGQRPREILESRQPIMS--------PAWSPERDRLAYVSFEGGRSEIYVQNLRSGQRD 238
Query: 452 RQVYFKNAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
R F+ S W P + T S +I + +DD VRRLT +
Sbjct: 239 RIASFRGINSAPAWSPDGRHLAVT------LSRDGRANIYLLRLDD----GHVRRLTDHW 288
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R G +Y + A G G G+ R+T + NWSPDG
Sbjct: 289 AIDTEPTFSPDGERIAFTSDRGGRPQVYTL-AVNGPG-GVERVTFDGDYNARPNWSPDGR 346
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
IA R N GSF + +H + +++ G + P F+P+G I++++ G
Sbjct: 347 RIAMVH-RHN---GSFRI-AVHDLESDRTRVLTDGPWDES--PVFAPNGDMIMYSAGGSG 399
Query: 631 IS 632
S
Sbjct: 400 DS 401
>gi|410632985|ref|ZP_11343632.1| conserved hypothetical protein [Glaciecola arctica BSs20135]
gi|410147154|dbj|GAC20499.1| conserved hypothetical protein [Glaciecola arctica BSs20135]
Length = 1115
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I V +DG A + LT + N P+VSPDG+ I F S R G NL++MD +G L
Sbjct: 87 IYVVALDGGKA-KALTQDFAWNIHPAVSPDGEKIAFISDRGGLSNLWVMDKDGSHLKQLS 145
Query: 552 R----LTEGPWSDTMCNWSPDGEWIAFA----SDRDNPGSGSFEMYLIHP---NGTGLRK 600
+ L P WSPDG++IA + S R P E++L H +G ++K
Sbjct: 146 KEKNNLIHSP------KWSPDGQYIAVSKGIMSSRSIPAG---EIWLYHHSGGDGLAIKK 196
Query: 601 LIQSGSAGRAN--HPYFSPDGKSIVFTSDYGG 630
+ +G + N P FSPDGK + FT D G
Sbjct: 197 RV-NGKKDQKNIADPAFSPDGKYLYFTQDVSG 227
>gi|157964377|ref|YP_001499201.1| translocation protein TolB [Rickettsia massiliae MTU5]
gi|166988078|sp|A8F168.1|TOLB_RICM5 RecName: Full=Protein TolB; Flags: Precursor
gi|157844153|gb|ABV84654.1| TolB protein precursor [Rickettsia massiliae MTU5]
Length = 444
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAQNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+FT
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFTK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSRAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SES+ + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESNSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRAL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAQN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|452127372|ref|ZP_21939955.1| translocation protein TolB [Bordetella holmesii F627]
gi|452130744|ref|ZP_21943316.1| translocation protein TolB [Bordetella holmesii H558]
gi|451920669|gb|EMD70815.1| translocation protein TolB [Bordetella holmesii H558]
gi|451922467|gb|EMD72612.1| translocation protein TolB [Bordetella holmesii F627]
Length = 438
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 43/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV----YFKNAFSTVWDPVREAVVYTS 475
P++SP G ++A+V F P VYV ++R Q+ + N + W P
Sbjct: 211 PTWSPDGSKLAYVSFHSGKPVVYVQTL--ASRSQIPVANFKGNNSAPAWSP--------- 259
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G + A ++ + I + DG S RR+T + + P+ +PDG+ I+F S R+G
Sbjct: 260 DGSQLAVALTQDGLSQIYIVSADGSSKPRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGP 319
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y + +GGE RLT + SPDG + + + RD G+F + ++ +
Sbjct: 320 QIYQVGLDGGEA---RRLTFNGSYNISPRISPDGSTLLYVARRD----GAFRIASLNLS- 371
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
TG L+ G ++ P F+P+G +++ + G S + + DG
Sbjct: 372 TGTETLLTDGRDDQS--PSFAPNGMQVLYATIQNGRSV--------------LAGVSSDG 415
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+ L+ + E P WGP
Sbjct: 416 RVRQTLSVLNGEIREPTWGP 435
>gi|311280380|ref|YP_003942611.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Enterobacter cloacae SCF1]
gi|308749575|gb|ADO49327.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter
cloacae SCF1]
Length = 430
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSSQPLMSPAWSPDGAKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+M+
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T NW PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---ITQVTNGRSNNTEPNWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGS--QNQDADVSADGKFLVMVSSANG 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD +++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGAKLAY------VTFESGRSALVIQTLANGAVRQVASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
++AF +YV+N QV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMNLASGQITQVTNGRSNNTEPNWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSADGKFLVMVSSANGQQHIAKQDLAAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|255535417|ref|YP_003095788.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10]
gi|255341613|gb|ACU07726.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10]
Length = 741
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 38/203 (18%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D++G R+LT + +A VSPDGK+IVF S R+G L+ MD +G L
Sbjct: 137 IYIADLNG-KITRKLTDSPGYDAEAVVSPDGKYIVFTSMRSGDLELWRMDIDGKN---LK 192
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS------------------GSFEMYLIHP 593
+LT G D +S D + + F S R P S + E+Y ++
Sbjct: 193 QLTTGLGYDGGAFFSHDSKKLVFRSSR--PTSEKEVKEYRELLGENLVAPTNMEIYTMNV 250
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG-EIFKIK 652
+G+ L+++ G A + PYF P + IVF+S++ H + Y +I+ I
Sbjct: 251 DGSDLKQVTNLGKANWS--PYFHPSDRKIVFSSNH-----------HSTRGYDFQIYSID 297
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DG +L ++T S + P + P
Sbjct: 298 TDGRNLTQITYESEFNAFPMFSP 320
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 441 VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y +N DGS+ +QV K +S + P +V++S ++ + I SI D D
Sbjct: 245 IYTMNVDGSDLKQVTNLGKANWSPYFHPSDRKIVFSSN--HHSTRGYDFQIYSI---DTD 299
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK----NLYIMD 541
G + + ++T + NAFP SPDGK +VF S R K N+++ D
Sbjct: 300 GRN-LTQITYESEFNAFPMFSPDGKQLVFSSNRQAGKAHETNVFVAD 345
>gi|239947882|ref|ZP_04699635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922158|gb|EER22182.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 444
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 35/242 (14%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKENVVGDFSGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S T +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYTAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DY 628
+
Sbjct: 402 GW 403
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 32/231 (13%)
Query: 453 QVYFKNAFSTVWDPVREAVVYTSGGPE----FASESSEV-DIISINVDDVDGVSAVRRLT 507
+ ++ A + D + E + +G + + SESS + I I + D DG A +
Sbjct: 137 ETLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDG--ANNKYL 194
Query: 508 TNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL-YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
TNGK+ P + I + S T + L Y D + G+ + + ++ +
Sbjct: 195 TNGKSLVLTPRFARSADKIFYVSYATKRRALVYEKDLKTGKENVVGDFSGISFAP---RF 251
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG + ++ GS +Y I L KL + G P +SPDGK IV+
Sbjct: 252 SPDGRKAVMSIAKN----GSTHIYEIDLATKRLHKL--TDGFGINTSPSYSPDGKKIVYN 305
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD G+ +++ + DGSD++R++ P+W PR
Sbjct: 306 SDRNGVP--------------QLYIMNSDGSDVQRISFGGGSYTAPSWSPR 342
>gi|237730721|ref|ZP_04561202.1| translocation protein TolB [Citrobacter sp. 30_2]
gi|226906260|gb|EEH92178.1| translocation protein TolB [Citrobacter sp. 30_2]
Length = 431
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSANG 355
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|269126248|ref|YP_003299618.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183]
gi|268311206|gb|ACY97580.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183]
Length = 676
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 38/260 (14%)
Query: 423 FPSFSPKGDRIAFVEFPG-----VYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSG 476
P +SP+ DRIAF + G V+VVN DG R+ N R V ++
Sbjct: 445 LPQWSPRRDRIAFTRWSGGATSEVWVVNPDGGGAERKADGING--------RSRVAWSPD 496
Query: 477 GPEFASESSEVDIISINVDDV-DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G A+ + ++V D+ DG +V +LT + P+ S DGK + F S R G +
Sbjct: 497 GASLAAMTRTGGRAQLSVIDLSDG--SVEQLTDDRSVKDDPTWSRDGK-LAFWSRRDGSQ 553
Query: 536 NLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
LY +D + T P WSPDG W+AF N ++ +I
Sbjct: 554 QLYWLDPADPQRRWRQVTTRRVAPHGANDPIWSPDGRWLAFTV--MNEAGHGHDIAVIRA 611
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+GTG R+L +G A + P +SPDGK + F P++TP +I+ + +
Sbjct: 612 DGTGYRRLT-TGPAHDMD-PSWSPDGKWLAFVRG-------PVATP-------QIWAMPV 655
Query: 654 DGSDLKRLTQNSFEDGTPAW 673
D + G P W
Sbjct: 656 DAGQARARPVGPLAVGHPDW 675
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 50/224 (22%)
Query: 464 WDPVREAVVYT--SGGPEFASESSEVDIISINVDDVDGVSAVRRL-TTNGKNNAFPSVSP 520
W P R+ + +T SGG +SEV ++ + DG A R+ NG++ + SP
Sbjct: 448 WSPRRDRIAFTRWSGG-----ATSEVWVV-----NPDGGGAERKADGINGRSRV--AWSP 495
Query: 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580
DG + + G L ++D G + +LT+ WS DG+ +AF S RD
Sbjct: 496 DGASLAAMTRTGGRAQLSVIDLSDGS---VEQLTDDRSVKDDPTWSRDGK-LAFWSRRD- 550
Query: 581 PGSGSFEMYLIHP-------NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT--SDYGGI 631
GS ++Y + P R++ G AN P +SPDG+ + FT ++ G
Sbjct: 551 ---GSQQLYWLDPADPQRRWRQVTTRRVAPHG----ANDPIWSPDGRWLAFTVMNEAG-- 601
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
H + +I I+ DG+ +RLT D P+W P
Sbjct: 602 --------HGH----DIAVIRADGTGYRRLTTGPAHDMDPSWSP 633
>gi|111221034|ref|YP_711828.1| serine/threonine protein kinase [Frankia alni ACN14a]
gi|111148566|emb|CAJ60239.1| Putative serine/threonine protein kinase [Frankia alni ACN14a]
Length = 770
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 51/248 (20%)
Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
R+ VVY S + + D+ +V G+ + L T N+ P++S D K +VF
Sbjct: 484 RDTVVYAS------NRNGNYDLFRGDVTGDGGLQNDKPLLTGPDNDMLPAISGDRKTVVF 537
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS------DTMCNWSPDGEWIAFASDRDNP 581
+ G N A G G + T GP + D + SPDGE++ S D
Sbjct: 538 --FKKGSPNTLQAIAADGTGKPVQLFTSGPAANLTIANDARPSLSPDGEFLVVRSSTDEK 595
Query: 582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG--------ISA 633
+ +Y++ +G+ +R+L + +A P +SPDG+ I + S+ G IS
Sbjct: 596 RDQNPGLYIVRLDGSSVRRLK---TKPQATDPAWSPDGERIAYWSNNAGGDRGFVVVISV 652
Query: 634 EPISTPHQ-------------YQPYG-------------EIFKIKLDGSDLKRLTQNSFE 667
EP + + P G EIF++ DGSD+++LT +
Sbjct: 653 EPDAVAQPVINDKLTTDSDPVWSPNGDKIAFTREQNGDLEIFEMGSDGSDVRQLTHARGD 712
Query: 668 DGTPAWGP 675
D PA+GP
Sbjct: 713 DQDPAFGP 720
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 412 PDISLFRFDGSFPSFSPKGDRIAFV--------EFPGVYVVNSDGSNRRQVYFK-NAFST 462
P +L + + PS SP G+ + + PG+Y+V DGS+ R++ K A
Sbjct: 565 PAANLTIANDARPSLSPDGEFLVVRSSTDEKRDQNPGLYIVRLDGSSVRRLKTKPQATDP 624
Query: 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522
W P E + Y S + V +IS+ D V +LTT+ P SP+G
Sbjct: 625 AWSPDGERIAYWSN--NAGGDRGFVVVISVEPDAVAQPVINDKLTTDSD----PVWSPNG 678
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
I F + G ++ M G +G + +LT D + PDG I F+ RD
Sbjct: 679 DKIAFTREQNGDLEIFEM---GSDGSDVRQLTHARGDDQDPAFGPDGR-IVFSGQRDPAN 734
Query: 583 SGSFEMYLIHPN--GTGLRKLIQSG 605
+ ++++++PN G R+L G
Sbjct: 735 PNARQLFVLNPNDPAAGDRQLTTLG 759
>gi|421843380|ref|ZP_16276540.1| translocation protein TolB [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411775101|gb|EKS58547.1| translocation protein TolB [Citrobacter freundii ATCC 8090 = MTCC
1658]
Length = 430
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSANG 354
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|378827377|ref|YP_005190109.1| TolB protein [Sinorhizobium fredii HH103]
gi|365180429|emb|CCE97284.1| TolB protein precursor [Sinorhizobium fredii HH103]
Length = 456
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG IVF S R G + LY+M G +G G R++ G S + WSP G+ IAF
Sbjct: 317 PSYSPDGGRIVFESDRGGKQQLYVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFT 373
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + ++ P+G+G R L + G N P ++P+G+ ++F G
Sbjct: 374 KQ----SGGKFSIGVMKPDGSGERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP 425
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I L G + +++ F PAW P
Sbjct: 426 ------------QLYSIDLTGYNEQQIQTQGFAS-DPAWSP 453
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG +A R LT + P SP+ + I + S +Y++ E G+
Sbjct: 205 QLAIMDQDGFNA-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQ---R 260
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SPDG+ + + ++ G+ +Y + +L + +
Sbjct: 261 EVVGNFPGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRLTNTNAID-- 314
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 315 TSPSYSPDGGRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGS 357
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 358 YSTPVWSPR 366
>gi|387793109|ref|YP_006258174.1| periplasmic component of the Tol biopolymer transport system
[Solitalea canadensis DSM 3403]
gi|379655942|gb|AFD08998.1| periplasmic component of the Tol biopolymer transport system
[Solitalea canadensis DSM 3403]
Length = 321
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 26/181 (14%)
Query: 505 RLTTNGKNNAFPS-VSPDGKWIVF-RSTRTGYKN------LYIMDAEGGEGYGLHRLTEG 556
+LT K ++ + +SPDGK ++F RS + N L++M+ +G E L + +
Sbjct: 57 QLTKEKKQESWRARISPDGKKVLFYRSPSGSFSNTTEKASLWVMNIDGSEQTLLIKQGDN 116
Query: 557 PWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
W + + NWSPDG+ I A + +G + + G ++LI+ G P F
Sbjct: 117 GWVEQSGANWSPDGQKIIMAVAVEK--NGPLTIMVTDNQGKNPQQLIKR--KGYFADPAF 172
Query: 616 SPDGKSIVFTS---DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
SPDG I + + DY G S + EIF +K DGS+ RLT + F D PA
Sbjct: 173 SPDGNWIAYVAWPEDYIGTSLGHL----------EIFVMKADGSEETRLTYDEFRDHDPA 222
Query: 673 W 673
W
Sbjct: 223 W 223
>gi|407771733|ref|ZP_11119084.1| translocation protein TolB [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285275|gb|EKF10780.1| translocation protein TolB [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 456
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 41/270 (15%)
Query: 417 FRFDGSF----PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDP 466
F DG F P FSP + ++ + P VYV++ D + + F+ + P
Sbjct: 214 FLSDGKFLVLNPRFSPTAQEVVYMSYFNDKPRVYVLDIDTGELELLGDFPGMTFAPRFAP 273
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
+VV S + SE ++D+ + R+LT + + PS SPDG I
Sbjct: 274 DGNSVV-MSQALDGNSEIYQLDLRT---------REKRQLTRHPAVDTSPSYSPDGSRIT 323
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F S R+G + LY+M+A+G G+ R++ G WSP G+ IAF + G F
Sbjct: 324 FNSDRSGSQQLYVMNADGS---GVQRISFGGGLYATPVWSPRGDLIAFTKSQ----GGRF 376
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
+ ++ P+G+G R L + P ++P+G+ +++ + T +Y+
Sbjct: 377 YIGVMRPDGSGERLLAE---GFLVEGPTWAPNGRVLMYHRQHPSRDG----TKDRYR--- 426
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGT-PAWGP 675
++ I L G + + + + DG+ PAW P
Sbjct: 427 -LYSIDLTGFNEREIVTPA--DGSDPAWSP 453
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
+ SES D + + + D DG A R ++GK P SP + +V+ S
Sbjct: 188 YVSESGPGDKRVKRLAIMDQDG--ANHRFLSDGKFLVLNPRFSPTAQEVVYMSYFNDKPR 245
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++D + GE L L + P ++PDG + + D G+ E+Y +
Sbjct: 246 VYVLDIDTGE---LELLGDFPGMTFAPRFAPDGNSVVMSQALD----GNSEIYQLDLRTR 298
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R+L + + P +SPDG I F SD G +++ + DGS
Sbjct: 299 EKRQLTRHPAVD--TSPSYSPDGSRITFNSDRSGSQ--------------QLYVMNADGS 342
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
++R++ TP W PR
Sbjct: 343 GVQRISFGGGLYATPVWSPR 362
>gi|365105405|ref|ZP_09334652.1| protein tolB [Citrobacter freundii 4_7_47CFAA]
gi|395227442|ref|ZP_10405768.1| protein tolB [Citrobacter sp. A1]
gi|420370523|ref|ZP_14871074.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1235-66]
gi|424728854|ref|ZP_18157459.1| protein tolB [Citrobacter sp. L17]
gi|363643420|gb|EHL82738.1| protein tolB [Citrobacter freundii 4_7_47CFAA]
gi|391320185|gb|EIQ77082.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1235-66]
gi|394718770|gb|EJF24391.1| protein tolB [Citrobacter sp. A1]
gi|422896725|gb|EKU36507.1| protein tolB [Citrobacter sp. L17]
gi|455641509|gb|EMF20680.1| translocation protein TolB [Citrobacter freundii GTC 09479]
Length = 430
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSANG 354
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|451941170|ref|YP_007461808.1| TolB protein [Bartonella australis Aust/NH1]
gi|451900557|gb|AGF75020.1| TolB protein [Bartonella australis Aust/NH1]
Length = 439
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK IVF S R G +Y MD +GG L R++ S WSP G++IAF
Sbjct: 300 SYSPDGKQIVFSSDRGGKPQIYKMDTDGGN---LQRISLNEGSYATPIWSPRGDYIAFTK 356
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
G F + ++HP+G G R L + G N P ++P+G+ ++F EP
Sbjct: 357 QY----KGQFSIGVMHPDGRGERIL----TTGFHNEGPTWAPNGRVLMF------FRQEP 402
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
P +I+ I + G + ++L T N D PAW P
Sbjct: 403 GMGP-------KIYTIDITGRNERQLPTPNDASD--PAWSP 434
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 14/62 (22%)
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+SPDGK IVF+SD GG +P +I+K+ DG +L+R++ N TP W
Sbjct: 301 YSPDGKQIVFSSDRGG------------KP--QIYKMDTDGGNLQRISLNEGSYATPIWS 346
Query: 675 PR 676
PR
Sbjct: 347 PR 348
>gi|436710817|ref|ZP_20518667.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434991431|gb|ELL82926.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
Length = 217
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
AVR++ + ++N P+ SPDG + F ++TG NLY+MD G+ + ++T+G ++T
Sbjct: 22 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ---IRQITDGRSNNT 78
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +AF SD+ +G ++Y ++ NG +++ GS + S DGK
Sbjct: 79 EPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRITWEGSQNQ--DADVSSDGKF 132
Query: 622 IVFTSDYGG 630
+V S G
Sbjct: 133 MVMVSSNNG 141
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 27/231 (11%)
Query: 394 TREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDG 448
T E G + L+++ + + + ++ F P+FSP G ++AF +YV++
Sbjct: 5 TFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLAS 64
Query: 449 SNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
RQ+ + +T W P + + +TS ++ + +N++ A +R+
Sbjct: 65 GQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAGRPQVYKMNING----GAAQRI 114
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T G N VS DGK++V S+ G +++ D G G+ L+ + D + +
Sbjct: 115 TWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG---GVQVLSS-TFLDETPSLA 170
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
P+G + ++S + G GS + L+ +G +L + G+ P +SP
Sbjct: 171 PNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PATDGQVKSPAWSP 215
>gi|433605404|ref|YP_007037773.1| hypothetical protein BN6_36050 [Saccharothrix espanaensis DSM
44229]
gi|407883257|emb|CCH30900.1| hypothetical protein BN6_36050 [Saccharothrix espanaensis DSM
44229]
Length = 1032
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A RRLT + ++ P+ SPDG+ +VF+S R G +LY +DA GGE +LT G
Sbjct: 84 AARRLTGDLQDATLPTWSPDGRSLVFQSYRDGNFHLYRVDAAGGE---PRQLTTGRHDHR 140
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
+SPDG IAF DR G + ++++ + + +G A P +SPDG
Sbjct: 141 EPVFSPDGRRIAFTGDR----GGHYGVWVLDVASGEVTAI--TGPPDEAAAPRWSPDGAR 194
Query: 622 IVFTSDYGGISAEPIST 638
IVFT++ + ++T
Sbjct: 195 IVFTANETAVDVVTVAT 211
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
R + N S SPDG W+ ++++ A GG RLT T+
Sbjct: 46 RSVVVREGTNISVSSSPDGTWLATDLA----AAIWVLPAAGGAA---RRLTGDLQDATLP 98
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--PYFSPDGKS 621
WSPDG + F S RD G+F +Y + G R+L + GR +H P FSPDG+
Sbjct: 99 TWSPDGRSLVFQSYRD----GNFHLYRVDAAGGEPRQL----TTGRHDHREPVFSPDGRR 150
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPV 681
I FT D GG YG ++ + + ++ +T E P W P R V
Sbjct: 151 IAFTGDRGG-------------HYG-VWVLDVASGEVTAITGPPDEAAAPRWSPDGARIV 196
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ A P VSPDG I FR+ ++++ A GG RLT+G W D+ ++SPDG
Sbjct: 321 RGIAGPVVSPDGARIAFRA----LNAVHLVSALGGR---PRRLTDGAWFDSDPDFSPDGR 373
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
I ++SDR + + TG + + +G G P F+PDG I + G
Sbjct: 374 SIVYSSDRTGVPALRLRDLV-----TGADRALPAGP-GAQTAPRFAPDGDRIAYVDHDGA 427
Query: 631 ISA--EPISTPHQYQP 644
+ P T Q P
Sbjct: 428 VWVLDVPAGTRRQVTP 443
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 477 GPEFASESSEVDIISINVDDVDGVSAV----RRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
GP + + + + ++N V VSA+ RRLT ++ P SPDG+ IV+ S RT
Sbjct: 325 GPVVSPDGARIAFRALNA--VHLVSALGGRPRRLTDGAWFDSDPDFSPDGRSIVYSSDRT 382
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
G L + D G L GP + T ++PDG+ IA+
Sbjct: 383 GVPALRLRDLVTGADRA---LPAGPGAQTAPRFAPDGDRIAY 421
>gi|399071461|ref|ZP_10749993.1| amidohydrolase, imidazolonepropionase [Caulobacter sp. AP07]
gi|398043375|gb|EJL36285.1| amidohydrolase, imidazolonepropionase [Caulobacter sp. AP07]
Length = 1056
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
N VSPDG + F Y L++M GG RLT+ + +WSPDG+
Sbjct: 55 TNICARVSPDGATLAFDV----YAMLWLMPVAGGPA---RRLTDDIFEIAQPDWSPDGKS 107
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ F S RD G+F ++ I +G GLR+L + A P +SPDG+ I F+SD GG
Sbjct: 108 LIFQSYRD----GNFHIWTIGADGAGLRQLTRG--AFDCREPRYSPDGRRIAFSSDRGG 160
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
RRLT + A P SPDGK ++F+S R G +++ + G +G GL +LT G +
Sbjct: 86 ARRLTDDIFEIAQPDWSPDGKSLIFQSYRDGNFHIWTI---GADGAGLRQLTRGAFDCRE 142
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
+SPDG IAF+SDR G + ++++ + S G P +SPDG+SI
Sbjct: 143 PRYSPDGRRIAFSSDR----GGRYGVHVLDLASGAITPF--SSGPGDEFEPSWSPDGQSI 196
Query: 623 VFTSD 627
FT D
Sbjct: 197 AFTVD 201
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 123/305 (40%), Gaps = 76/305 (24%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFP---SFSPKG 430
+P +PD V Y EDG +L N +L R + FP S+ P G
Sbjct: 234 SPAFTPDGGDVVYTAI------EDGKAEL--RNAAG-----ALVRGEDVFPFRVSWLPSG 280
Query: 431 DRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490
+ +V +DG +R+ A T+ V V+ P + E D +
Sbjct: 281 E----------FVYTADGKIKRRSATSGAAQTIAFTVTVPVIR----PRY--EKKSRDFL 324
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
S V G+ + P++SPDG+ IVFR+ +LY++ G
Sbjct: 325 STRTRPVVGIGS-------------PALSPDGRQIVFRA----LNDLYLLPVGGKA---- 363
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
LT+ +S WSPDG+ +A+++D+ GS +++L R+L + G A
Sbjct: 364 QALTQDRFSKVDPAWSPDGKILAYSTDK----GGSLDIWLRDMATGQARQLTRFD--GAA 417
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
+S DGKSI F GG+ +T + +RL + +E G
Sbjct: 418 VSGAWSRDGKSIAFLGQNGGLFVADAAT-----------------GETRRLYADIWEPGK 460
Query: 671 PAWGP 675
P+WGP
Sbjct: 461 PSWGP 465
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 427 SPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSGGPEFASE 483
SP G +AF + ++++ G R++ + F W P +++++ S
Sbjct: 62 SPDGATLAFDVYAMLWLMPVAGGPARRLT-DDIFEIAQPDWSPDGKSLIFQS------YR 114
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
I +I D + +R+LT + P SPDG+ I F S R G ++++D
Sbjct: 115 DGNFHIWTIGADG----AGLRQLTRGAFDCREPRYSPDGRRIAFSSDRGGRYGVHVLDLA 170
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G + + GP + +WSPDG+ IAF D+ + + G R+ +
Sbjct: 171 SG---AITPFSSGPGDEFEPSWSPDGQSIAFTVDKTR---------IDVQDAAGARRTVG 218
Query: 604 --SGSAGRAN-----HPYFSPDGKSIVFTS 626
S R N P F+PDG +V+T+
Sbjct: 219 KVKASTDRFNAASVASPAFTPDGGDVVYTA 248
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 125/340 (36%), Gaps = 95/340 (27%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQL-LLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
P SPD + + R DGN + + + L ++ FD P +SP G R
Sbjct: 98 QPDWSPDGKSLIFQSYR------DGNFHIWTIGADGAGLRQLTRGAFDCREPRYSPDGRR 151
Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG---------GPEFASE 483
IAF +SD R V+ + S P ++SG P+ S
Sbjct: 152 IAF---------SSDRGGRYGVHVLDLASGAITP------FSSGPGDEFEPSWSPDGQSI 196
Query: 484 SSEVDIISINVDDVDG----VSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ VD I+V D G V V+ T N + A P+ +PDG +V+ + G L
Sbjct: 197 AFTVDKTRIDVQDAAGARRTVGKVKASTDRFNAASVASPAFTPDGGDVVYTAIEDGKAEL 256
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTM---CNWSPDGEWIAFAS---DRDNPGSGSFEMY-- 589
+A G L G D +W P GE++ A R + SG+ +
Sbjct: 257 --RNAAGA-------LVRG--EDVFPFRVSWLPSGEFVYTADGKIKRRSATSGAAQTIAF 305
Query: 590 -----LIHPN---------GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
+I P T R ++ GS P SPDG+ IVF
Sbjct: 306 TVTVPVIRPRYEKKSRDFLSTRTRPVVGIGS------PALSPDGRQIVF----------- 348
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ +++ + + G + LTQ+ F PAW P
Sbjct: 349 -------RALNDLYLLPV-GGKAQALTQDRFSKVDPAWSP 380
>gi|114798605|ref|YP_758888.1| tolB protein [Hyphomonas neptunium ATCC 15444]
gi|114738779|gb|ABI76904.1| tolB protein [Hyphomonas neptunium ATCC 15444]
Length = 451
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 113/266 (42%), Gaps = 45/266 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P FSP I ++ F P VY+ N + RQ N + P T G
Sbjct: 214 PRFSPSSQEITYMSFEGGRPRVYLFNIETG--RQELLGNFPGMTFAPR----FGTDGQSV 267
Query: 480 FASESSE--VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S++ D+ +N+ + RRLT + + PS+SPDGK +VF S R G L
Sbjct: 268 LLSQAQRGNTDVYIMNLRTRES----RRLTDHPAIDTSPSMSPDGKSVVFNSDRGGTPQL 323
Query: 538 YIMDAEG-------GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
YIM+ +G G R+T G + WSP G+ IAF G F + +
Sbjct: 324 YIMNTDGSPRACASGGRDTACRITFGRGRYSTPVWSPRGDLIAFTKQE----GGKFYIGV 379
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
I +G G R L +S P +SP+G+ IVF + ++ +++
Sbjct: 380 IGTDGKGERLLSESYL---DEGPDWSPNGRVIVFFRE------------NRPGAGAQLWS 424
Query: 651 IKLDGSDLKR-LTQNSFEDGTPAWGP 675
+ L G + +R +TQ D PAW P
Sbjct: 425 VDLSGRNERRVMTQTDASD--PAWSP 448
>gi|161525756|ref|YP_001580768.1| translocation protein TolB [Burkholderia multivorans ATCC 17616]
gi|189349522|ref|YP_001945150.1| translocation protein TolB [Burkholderia multivorans ATCC 17616]
gi|226705870|sp|A9AFQ0.1|TOLB_BURM1 RecName: Full=Protein TolB; Flags: Precursor
gi|160343185|gb|ABX16271.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC 17616]
gi|189333544|dbj|BAG42614.1| TolB protein [Burkholderia multivorans ATCC 17616]
Length = 431
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I S+N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYSVNSNG----GGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 396
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 565 WSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSP G +A+ S +R P + IH TG R ++ S G + P +SPDG ++
Sbjct: 203 WSPSGTKVAYVSFERKKP------IVYIHDLPTGRRYMV-SDQKGNNSAPAWSPDGNTLA 255
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + +I+ + +G L+RLTQ+S D P + P
Sbjct: 256 VALSLTGNT--------------QIYSVNSNGGGLRRLTQSSSIDTEPFYSP 293
>gi|227327556|ref|ZP_03831580.1| translocation protein TolB [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 430
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A+R++ + ++N PS SPDG + F +++G NLY+M+ G+ + ++T+G ++T
Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQ---ISQVTDGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +A+ SD+ +G ++Y ++ NG ++L GS + + S DGK
Sbjct: 292 EPTWFPDSQTLAYTSDQ----AGRPQVYKVNANGGAPQRLTWEGSQNQDSD--VSADGKF 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S GG I K+ L ++ LT ++F D TP+ P
Sbjct: 346 LVTVSSNGGAQ--------------HISKLDLVTGAVQVLT-DTFLDETPSIAP 384
>gi|323495161|ref|ZP_08100246.1| translocation protein TolB [Vibrio brasiliensis LMG 20546]
gi|323310601|gb|EGA63780.1| translocation protein TolB [Vibrio brasiliensis LMG 20546]
Length = 437
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDGK + + S + G ++IM+ GE
Sbjct: 189 LRVSDYDGYN--ERLVLRSKQPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGE---R 243
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG +A + +GS ++Y + N RKL Q + GR+
Sbjct: 244 EKVTSYPRHNGAPRFSPDGSKLALVLSK----TGSLQVYTLDLNS---RKLTQI-TRGRS 295
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG +P +I+++ L + KR+T
Sbjct: 296 NNTEPFWHPDGKSLIFTSDRGG------------KP--QIYQVDLASNSTKRIT 335
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 41/218 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD ++ Y ++G ++ + NI + + S R +G+ P FSP G
Sbjct: 210 MSPAWSPDGKKLAYVSF------QNGQAEIFIMNIYTGEREKVTSYPRHNGA-PRFSPDG 262
Query: 431 DRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
++A V VY ++ + Q+ + +T W P +++++TS G P+
Sbjct: 263 SKLALVLSKTGSLQVYTLDLNSRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIY 322
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYKNLYIM 540
+VD+ S ++ +R+T G N ++PDG+++V + TG+ NL +
Sbjct: 323 ----QVDLAS---------NSTKRITWQGSQNLGGQITPDGRFLVMVNRSNTGF-NLAKL 368
Query: 541 DAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFAS 576
D E G L + L E P + +P+G + ++S
Sbjct: 369 DLETGAMQILTKTLLDESP------SIAPNGGMVIYSS 400
>gi|227114917|ref|ZP_03828573.1| translocation protein TolB [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 430
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A+R++ + ++N PS SPDG + F +++G NLY+M+ G+ + ++T+G ++T
Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQ---ISQVTDGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +A+ SD+ +G ++Y ++ NG ++L GS + + S DGK
Sbjct: 292 EPTWFPDSQTLAYTSDQ----AGRPQVYKVNANGGAPQRLTWEGSQNQDSD--VSADGKF 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S GG I K+ L ++ LT ++F D TP+ P
Sbjct: 346 LVTVSSNGGAQ--------------HISKLDLVTGAVQVLT-DTFLDETPSIAP 384
>gi|115350731|ref|YP_772570.1| translocation protein TolB [Burkholderia ambifaria AMMD]
gi|123027500|sp|Q0BHY7.1|TOLB_BURCM RecName: Full=Protein TolB; Flags: Precursor
gi|115280719|gb|ABI86236.1| TolB, N-terminal domain protein [Burkholderia ambifaria AMMD]
Length = 431
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPYYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ +++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGG 396
>gi|359788660|ref|ZP_09291631.1| translocation protein TolB [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255452|gb|EHK58362.1| translocation protein TolB [Mesorhizobium alhagi CCNWXJ12-2]
Length = 437
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++ + R V + F+ + P + V+ +
Sbjct: 209 PRFSPTRQEITYMSYESGEPKVYLLQIETGQRELVGNFPGMTFAPRFSPDGQKVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
E +I S+++ RLT + + PS SPDG +VF S R G +
Sbjct: 266 --LLREDGNSNIFSMDLRS----RTTTRLTNSNAIDTSPSYSPDGSKVVFTSDRGGQPQI 319
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 320 YVM---GADGSGQTRISFGGGSYSTPVWSPRGDLIAFTKQ----SGGQFSIGVMKTDGSG 372
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L + + P ++P+G+ I+F + G S P + I L G +
Sbjct: 373 ERIL---STGFQQEGPTWAPNGRVIMFFKEAAG-SGGP-----------RLHSIDLTGRN 417
Query: 658 LKRLTQNSFEDGTPAWGP 675
+ + +F PAW P
Sbjct: 418 EQPIPTANFAS-DPAWSP 434
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG R ++GK+ A P SP + I + S +G +Y++ E G+
Sbjct: 186 LAIMDQDGAGV--RYLSDGKSIAMTPRFSPTRQEITYMSYESGEPKVYLLQIETGQ---R 240
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SPDG+ + + R++ S F M L T L + S
Sbjct: 241 ELVGNFPGMTFAPRFSPDGQKVIMSLLREDGNSNIFSMDLRSRTTTRL-----TNSNAID 295
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG +VFTSD GG QP +I+ + DGS R++ T
Sbjct: 296 TSPSYSPDGSKVVFTSDRGG------------QP--QIYVMGADGSGQTRISFGGGSYST 341
Query: 671 PAWGPR 676
P W PR
Sbjct: 342 PVWSPR 347
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP K I R +S +I DL TR + +P
Sbjct: 247 PGM-TFAPRFSPDGQKVIMSLLREDGNS--NIFSMDLRSRT---TTRLTNSNAIDTSPSY 300
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD S+V + RGG + DG+ Q IS S P +SP+GD
Sbjct: 301 SPDGSKVVFTSDRGGQPQIYVMGADGSGQT----------RISFGGGSYSTPVWSPRGDL 350
Query: 433 IAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPEFA 481
IAF + G + V+ +DGS R + F+ T W P +++ SGGP
Sbjct: 351 IAFTKQSGGQFSIGVMKTDGSGERILSTGFQQEGPT-WAPNGRVIMFFKEAAGSGGPRLH 409
Query: 482 S 482
S
Sbjct: 410 S 410
>gi|120612059|ref|YP_971737.1| translocation protein TolB [Acidovorax citrulli AAC00-1]
gi|120590523|gb|ABM33963.1| TolB, N-terminal domain protein [Acidovorax citrulli AAC00-1]
Length = 438
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P G + A S
Sbjct: 175 RIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWSP---------SGTQLAYVSF 225
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV + RRL N + +N+ P+ SPDG+ + +R G LY +DA G
Sbjct: 226 ESRKPVVYVHDVS--TGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANG 283
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR G+ ++Y + G ++ +
Sbjct: 284 GE---PRRLMQSSGIDTEPTYSSDGRSIYFVSDR----GGAPQIYRVPATGGSAERVTFT 336
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + P SPDGK + + S GG
Sbjct: 337 GTYNIS--PSISPDGKWLAYISRVGG 360
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 118/285 (41%), Gaps = 48/285 (16%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
D + + + SP P IS P++SP G ++A+V F P VYV + RR
Sbjct: 192 DADGENAQSALSSPEPIIS--------PAWSPSGTQLAYVSFESRKPVVYVHDVSTGRRR 243
Query: 453 QVY-FKNAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
+ F+ + S W P + T S + +I+ + + RRL +
Sbjct: 244 LIANFRGSNSAPAWSPDGRTLAVT------LSRDGSSQLYTIDANGGE----PRRLMQSS 293
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+ P+ S DG+ I F S R G +Y + A GG R+T + + SPDG+
Sbjct: 294 GIDTEPTYSSDGRSIYFVSDRGGAPQIYRVPATGGSA---ERVTFTGTYNISPSISPDGK 350
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
W+A+ S G+F+++++ + + + + P F+P+G+ IV+ +
Sbjct: 351 WLAYISRV----GGAFKLHVMDLTSGSVTAITDTTA---DESPSFAPNGRLIVYAT---- 399
Query: 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Q + LDG RL + + P WGP
Sbjct: 400 ----------QQQGREALMTTTLDGKIKARLAGQNGDIREPDWGP 434
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
S+ V D DG +A L++ + P+ SP G + + S + +Y+ D G
Sbjct: 187 SLWVADADGENAQSALSSP-EPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTGR---- 241
Query: 551 HRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL S++ WSPDG +A RD GS ++Y I NG R+L+QS +G
Sbjct: 242 RRLIANFRGSNSAPAWSPDGRTLAVTLSRD----GSSQLYTIDANGGEPRRLMQS--SGI 295
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P +S DG+SI F SD GG +I+++ G +R+T +
Sbjct: 296 DTEPTYSSDGRSIYFVSDRGGAP--------------QIYRVPATGGSAERVTFTGTYNI 341
Query: 670 TPAWGP 675
+P+ P
Sbjct: 342 SPSISP 347
>gi|399910989|ref|ZP_10779303.1| translocation protein TolB [Halomonas sp. KM-1]
Length = 429
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 109/291 (37%), Gaps = 74/291 (25%)
Query: 432 RIAFVEFPGV--------YVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFA 481
RIA+V GV YV ++DG N +QV S VW P G + A
Sbjct: 163 RIAYVTAQGVDQNMQFGLYVADADGHNSQQVLNSREPILSPVWSP---------DGRKLA 213
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S E + +I V DV + + +G N A P+ SPDG+ + ++ G ++YIMD
Sbjct: 214 YVSFETERPAIYVQDVGTGQRAQVASFDGINGA-PAWSPDGRRLAMTLSKDGQPDIYIMD 272
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--------GSGSFE------ 587
L R+T DT W+PDG + F SDR GSG E
Sbjct: 273 V---GSRNLERITNNSSIDTEPAWAPDGRSLIFTSDRSGGPQIYRYSFGSGQTERLTFTG 329
Query: 588 --------------MYLIHPNGTGLRKLIQSGSAGRA---------NHPYFSPDGKSIVF 624
++LIH + G + Q +GR P +P+G ++F
Sbjct: 330 NYNARGRLSPDGEALFLIHRSNNGFQVARQDLGSGRLVVISETRSDESPSVAPNGTMVIF 389
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G G + + DG RL + PAW P
Sbjct: 390 ATQQGN--------------SGVLGAVSADGRASYRLPSARGDVREPAWSP 426
>gi|406706635|ref|YP_006756988.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB5]
gi|406652411|gb|AFS47811.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB5]
Length = 448
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P + ++ + P VY+++ + + V + F+ + P + ++ +
Sbjct: 215 PRFNPNSQMVTYLSYFRNLPRVYLLDIETGTQEVVGDFPGMTFAPRFSPDGKKIIMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
FA + + DI ++++++ V ++T + + PS SPDGK+I F S R+GY+ +
Sbjct: 272 --FAKDGNS-DIYTMDLEN----RIVDKITNHPSIDTSPSYSPDGKYICFNSDRSGYQQI 324
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIMD+ G + R++ G WSP G+ IAF G F + ++ +GTG
Sbjct: 325 YIMDSNGK---NVKRISFGKGLYGTPVWSPRGDLIAFTKLH----KGKFYIGVMRTDGTG 377
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L ++ P +SP+G+ ++F
Sbjct: 378 ERLLTENYY---QEAPSWSPNGRVLIF 401
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 33/187 (17%)
Query: 500 VSAVRRLTTNGKNNAF----------PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
V + + +G NN F P +P+ + + + S +Y++D E G
Sbjct: 189 VKKLAIMDQDGSNNKFLTLGNELVLTPRFNPNSQMVTYLSYFRNLPRVYLLDIETGTQ-- 246
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+ + P +SPDG+ I + +D G+ ++Y + + K+ S
Sbjct: 247 -EVVGDFPGMTFAPRFSPDGKKIIMSFAKD----GNSDIYTMDLENRIVDKITNHPSIDT 301
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+ P +SPDGK I F SD G Y +I+ + +G ++KR++ G
Sbjct: 302 S--PSYSPDGKYICFNSDRSG--------------YQQIYIMDSNGKNVKRISFGKGLYG 345
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 346 TPVWSPR 352
>gi|347756399|ref|YP_004863962.1| serine/threonine protein kinase [Candidatus Chloracidobacterium
thermophilum B]
gi|347588916|gb|AEP13445.1| Serine/threonine protein kinase [Candidatus Chloracidobacterium
thermophilum B]
Length = 919
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 23/147 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P +PDGK +VF S RTG +++ +D G L LT P +D +PDG + ++
Sbjct: 649 PRYTPDGKGLVFTSNRTGNNDIWQLDFGSGR---LRPLTTHPDTDWDPVVAPDGTALYWS 705
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
S+R SG+FE++ +P+GT R L G++ A +P SPDGK + FT
Sbjct: 706 SNR----SGTFEIWTANPDGTRGRALTAFGAS--AQNPTVSPDGKEVFFT---------- 749
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLT 662
+S QY ++++K DGS +RL
Sbjct: 750 VSDHPQYG----LWRMKTDGSGGQRLV 772
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 462 TVWDPVREAVVYTSGGPEF--ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
T WDPV V G + ++ S +I + N D G R LT G + P+VS
Sbjct: 689 TDWDPV----VAPDGTALYWSSNRSGTFEIWTANPDGTRG----RALTAFGASAQNPTVS 740
Query: 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
PDGK + F + L+ M +G G L W + SPDG+++ + +
Sbjct: 741 PDGKEVFFTVSDHPQYGLWRMKTDGSGGQRLVAEMPARWPEV----SPDGQYLLYVTTMK 796
Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYG 629
G+G+ + +G + I+ G G ++ +SPDGK I + S G
Sbjct: 797 E-GTGNAIRVVRTADGEQVFS-IEVGLGGLSHGRARWSPDGKQIAWVSTIG 845
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
TN ++ P+ SPDG+ + F S R G + +++ GE + +T+G D+ +SP
Sbjct: 361 TNAGSDTAPAWSPDGQSLAFASRRDGRQRIWVKRIT-GEAVEVP-ITDG--DDSRPRYSP 416
Query: 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
DG+ IAF D+ G+ +Y++ G R + + G ++PDG+ + +
Sbjct: 417 DGQQIAFIRQMDD---GAAALYVVSSLGGEPRLIAREAVDGD-----WAPDGRRLCLS 466
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G +R LTT+ + P V+PDG + + S R+G ++ + +G G L
Sbjct: 676 GSGRLRPLTTHPDTDWDPVVAPDGTALYWSSNRSGTFEIWTANPDGTRGRALTAFGASAQ 735
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
+ T+ SPDG+ + F D+P G + M +G+G ++L+ A P SPD
Sbjct: 736 NPTV---SPDGKEVFFTVS-DHPQYGLWRM---KTDGSGGQRLVAEMP---ARWPEVSPD 785
Query: 619 GKSIVFTS 626
G+ +++ +
Sbjct: 786 GQYLLYVT 793
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 515 FPSVSPDGKWIVFRSTR---TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
+P VSPDG+++++ +T TG + A+G + + + + G S WSPDG+
Sbjct: 779 WPEVSPDGQYLLYVTTMKEGTGNAIRVVRTADGEQVFSIE-VGLGGLSHGRARWSPDGKQ 837
Query: 572 IAFASDRDNPGSGSFEMYLIHP--NGTGLRKLIQSGSAGRANHPY-FSPDGKSIVFTS 626
IA+ S G+G + P + T R+ + G + FSPDG+++V +
Sbjct: 838 IAWVS---TIGTGGIFIQDFRPGTDTTRTRRQLVGDIFGSPPESFAFSPDGRTLVVAA 892
>gi|336249329|ref|YP_004593039.1| translocation protein TolB [Enterobacter aerogenes KCTC 2190]
gi|444352518|ref|YP_007388662.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Enterobacter aerogenes EA1509E]
gi|334735385|gb|AEG97760.1| translocation protein TolB [Enterobacter aerogenes KCTC 2190]
gi|443903348|emb|CCG31122.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Enterobacter aerogenes EA1509E]
Length = 430
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVRTNGGQFPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGAVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S G Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKIMVMVSSANG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKIMVMVSSANGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|320101787|ref|YP_004177378.1| WD40-like beta Propeller containing protein [Isosphaera pallida
ATCC 43644]
gi|319749069|gb|ADV60829.1| WD40-like beta Propeller containing protein [Isosphaera pallida
ATCC 43644]
Length = 365
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
D++G + VR LT +A S SPDGK IVF S R G +YIMDA +G R+T
Sbjct: 159 DLEGGNLVR-LTDAPGYDAEGSYSPDGKSIVFTSFRDGDAEIYIMDA---DGRNPRRITH 214
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P D +SPDG+ I + SDR G+ +++ G R+L + + PY+
Sbjct: 215 APGYDGGPFFSPDGKRIIYRSDRK--GNDLLQIFDNSVEGDDERQLTSNDAVNWG--PYY 270
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
PDG+ V++ ++ H +Q Y E++ L + RLT DG P + P
Sbjct: 271 HPDGEFFVYS-----------TSIHGHQNY-EVYMQSLKTGAMTRLTYVEGFDGLPVFSP 318
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
YG + EG +SPDG I F + G +++Y+ K++ +G
Sbjct: 51 YGFAKAGEG-------YFSPDGSRIIFQAAPQ--GKEDYQIYVAELKPDAQPKMVSTGR- 100
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP--------------YGEIFKIKL 653
G+ +F PDG+SI+F S + + + P P + EIF+ L
Sbjct: 101 GKCTCAFFHPDGQSIIFASSHLDPKLDQPAEPRAKSPAYSRDARYRWDFDEWMEIFRADL 160
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
+G +L RLT D ++ P
Sbjct: 161 EGGNLVRLTDAPGYDAEGSYSP 182
>gi|294506198|ref|YP_003570256.1| hypothetical protein SRM_00383 [Salinibacter ruber M8]
gi|294342526|emb|CBH23304.1| Conserved hypothetical protein [Salinibacter ruber M8]
Length = 1072
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG-LHRL 553
D G + + T G+ N PS+SPDG+++ F S R + NLY+ DAE GE L R
Sbjct: 293 DSAGQTVLAPETNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRA 352
Query: 554 -TEGPWS-----DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
T G ++ + WSPDG +AF S D G ++ + + + +
Sbjct: 353 GTTGHFNALRFISSSGTWSPDGRRLAFVSSED----GDNQITVWNVVDEEIERSFSVDGV 408
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+P +SPDG + F GGIS +++ + L+ +++LT + +
Sbjct: 409 TSMKNPAWSPDGARLAFAGTDGGIS--------------DLYVLNLETESVRQLTNDRYA 454
Query: 668 DGTPAWGP 675
D P W P
Sbjct: 455 DLQPTWAP 462
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 70/253 (27%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
RF S ++SP G R+AFV + DG N+ TVW+ V E + +
Sbjct: 361 LRFISSSGTWSPDGRRLAFVS-------SEDGDNQ---------ITVWNVVDEEIERSF- 403
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
VDGV++++ P+ SPDG + F T G +
Sbjct: 404 -------------------SVDGVTSMKN----------PAWSPDGARLAFAGTDGGISD 434
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG------SGSFEMYL 590
LY+++ E + +LT ++D W+PDGE IAFA+DR S + ++ L
Sbjct: 435 LYVLNLETES---VRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETLSPSSNMDLGL 491
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
+ + + G A N P F+PDG+S+ F SD G + ++++
Sbjct: 492 VDVSSGEVTVRAPFGDALHHN-PQFAPDGQSLYFISDQDG--------------FKDVYR 536
Query: 651 IKLDGSDLKRLTQ 663
+ L D R+T+
Sbjct: 537 MDLSSGDRFRVTR 549
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFVSPKTHHLNP--FIS--- 378
P+ SP + +++A + R S+ ++ + D + I EL R + T H N FIS
Sbjct: 313 PSLSP-DGRYVAFISERELFSF-NLYVADAETGEVIAELDR--AGTTGHFNALRFISSSG 368
Query: 379 ---PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG----SFPSFSPKGD 431
PD R+ + + EDG+NQ+ + N+ + S F DG P++SP G
Sbjct: 369 TWSPDGRRLAF------VSSEDGDNQITVWNVVDEEIERS-FSVDGVTSMKNPAWSPDGA 421
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFASES- 484
R+AF G +YV+N + + RQ+ W P E + + + E E+
Sbjct: 422 RLAFAGTDGGISDLYVLNLETESVRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETL 481
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
S + + + DV R + P +PDG+ + F S + G+K++Y MD
Sbjct: 482 SPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGFKDVYRMDLSS 541
Query: 545 GEGYGLHRLTEG 556
G+ + + RL G
Sbjct: 542 GDRFRVTRLKTG 553
>gi|291612990|ref|YP_003523147.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans
lithotrophicus ES-1]
gi|291583102|gb|ADE10760.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans
lithotrophicus ES-1]
Length = 419
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 31/209 (14%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G + V +SDG + + N S W P + Y S F +
Sbjct: 156 RIAYVNRDGKKYRLVVADSDGYGEQTLLALNEPIMSPAWSPDGSQLAYVS----FERGHA 211
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK---NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
V + S+ A R+ T +N+ P+ SPDGK + +R GY LY++
Sbjct: 212 SVFVQSL---------ATRKRTVLADFPGSNSAPAWSPDGKQLALVLSRDGYSQLYLVRN 262
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+G + LHR+T DT ++PDG+ + F SDR GS ++Y + G +L
Sbjct: 263 DGKD---LHRITFSETIDTEPVFTPDGKSLLFTSDR----GGSAQIYRVPVEGGSAERLT 315
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
G+ + P SPDGKS VF+ G+
Sbjct: 316 FDGTNNFSPRP--SPDGKSFVFSHFVDGV 342
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P+ SPDG + + S G+ ++++ + L + P S++ WSPDG+ +A
Sbjct: 192 PAWSPDGSQLAYVSFERGHASVFVQSLATRK---RTVLADFPGSNSAPAWSPDGKQLALV 248
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
RD G ++YL+ +G L ++ S + P F+PDGKS++FTSD GG +
Sbjct: 249 LSRD----GYSQLYLVRNDGKDLHRITFSETID--TEPVFTPDGKSLLFTSDRGGSA--- 299
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+I+++ ++G +RLT DGT + PR
Sbjct: 300 -----------QIYRVPVEGGSAERLT----FDGTNNFSPR 325
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 29/218 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS--FPSFSPKG 430
++P SPD S++ Y + E G+ + ++++ + + L F GS P++SP G
Sbjct: 190 MSPAWSPDGSQLAY------VSFERGHASVFVQSLATRKRTV-LADFPGSNSAPAWSPDG 242
Query: 431 DRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASES 484
++A V + +Y+V +DG + ++ F T V+ P +++++TS
Sbjct: 243 KQLALVLSRDGYSQLYLVRNDGKDLHRITFSETIDTEPVFTPDGKSLLFTS------DRG 296
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I + V+G SA RLT +G NN P SPDGK VF G + + D E
Sbjct: 297 GSAQIYRV---PVEGGSA-ERLTFDGTNNFSPRPSPDGKSFVFSHFVDGVFYIAVQDFET 352
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+ + LT G W + +++P+G+ I FA++ G
Sbjct: 353 NQ---MQVLTGGGW-EKKPSFAPNGKLILFATESQGRG 386
>gi|255020046|ref|ZP_05292119.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340783435|ref|YP_004750042.1| tolB protein [Acidithiobacillus caldus SM-1]
gi|254970575|gb|EET28064.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340557586|gb|AEK59340.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus SM-1]
Length = 436
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 29/215 (13%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P++SP +A+V + +Y+ N RR+V A + A Y+ GG
Sbjct: 212 PAWSPGHGHLAYVSYRHQHSVIYIQNLRNGQRREVPGHGA-------AQSAPAYSPGGHY 264
Query: 480 FASE----SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
A +I+ +N+ D R LT G N P +P G+ I+F S R G
Sbjct: 265 LAFARVWGHGRTEIVRLNLAD----GQERVLTREGTVNTSPVWTPSGRHILFVSNRDGSA 320
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++ M+ GG G+ RL+ + SP+G WI F + +G + ++ G
Sbjct: 321 QIFQMNRNGG---GVRRLSFNGGYNVSPAISPNGRWIGFI----HADAGILSLAVMDRQG 373
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
LR L + R P F+PDG+ ++F + GG
Sbjct: 374 GDLRVLYAGANCER---PSFAPDGRMLLFNTHQGG 405
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 25/193 (12%)
Query: 422 SFPSFSPKGDRIAFVEFPG-----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYT 474
S P++SP G +AF G + +N R + + +T VW P +++
Sbjct: 254 SAPAYSPGGHYLAFARVWGHGRTEIVRLNLADGQERVLTREGTVNTSPVWTPSGRHILFV 313
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I +N + VRRL+ NG N P++SP+G+WI F G
Sbjct: 314 S------NRDGSAQIFQMNRNG----GGVRRLSFNGGYNVSPAISPNGRWIGFIHADAGI 363
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+L +MD +GG+ L L G + +++PDG + F + + G + + N
Sbjct: 364 LSLAVMDRQGGD---LRVLYAGANCER-PSFAPDGRMLLFNTHQ----GGRKVLAEVAIN 415
Query: 595 GTGLRKLIQSGSA 607
G GL L G A
Sbjct: 416 GKGLHFLQLPGQA 428
>gi|224582567|ref|YP_002636365.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467094|gb|ACN44924.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 434
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 170 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 225
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 226 GRSALVIQTL------ANGSVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 279
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 280 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 332
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 333 WEGSQNQDAD--VSSDGKFMVMVSSNNG 358
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 207 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGSVRQVASFPRHNGAPAFSPDGT 260
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 261 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 314
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 315 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 370
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 371 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 420
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 421 TDGQVKSPAWSP 432
>gi|283784493|ref|YP_003364358.1| colicin import protein [Citrobacter rodentium ICC168]
gi|282947947|emb|CBG87511.1| colicin import protein [Citrobacter rodentium ICC168]
Length = 430
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|341613702|ref|ZP_08700571.1| translocation protein TolB [Citromicrobium sp. JLT1363]
Length = 476
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 46/271 (16%)
Query: 414 ISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDP 466
I+ R P +SP ++ ++ + P +Y+ + G+ R+ + ++A F+ W P
Sbjct: 240 ITTGRATALTPRYSPDYRKLMYLSYVDGNPRIYIYDI-GTGRQTLVTESANPTFAPRWSP 298
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
V+Y+ + + DI ++ A RLTT + S SPDG IV
Sbjct: 299 DGRWVLYS------MAVNGNTDIYRVSASG----GASERLTTAPGIDVGGSYSPDGSRIV 348
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
F S R+G + +Y+M+A+G R+T WSP G+ IAF G F
Sbjct: 349 FESDRSGEQQIYMMNADGSN---QRRITFFGGRAATPEWSPRGDQIAFTYI-----PGDF 400
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYGGISAEPISTPHQYQP 644
+ + P G RKL + P ++P+G+ + F T G +A
Sbjct: 401 NIATMSPEGRNFRKLTD---GWQDEAPTWAPNGRVLQFFRTERNTGRTA----------- 446
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+++ L G +L+RL + PAWGP
Sbjct: 447 ---IYQVDLTGENLRRL-PTPVDASDPAWGP 473
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R T G+ A P SPD + +++ S G +YI D G G
Sbjct: 227 LAIMDSDG--ANHRFITTGRATALTPRYSPDYRKLMYLSYVDGNPRIYIYDI----GTGR 280
Query: 551 HRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
L + T WSPDG W+ ++ + G+ ++Y + +G +L + + G
Sbjct: 281 QTLVTESANPTFAPRWSPDGRWVLYSMAVN----GNTDIYRVSASGGASERL--TTAPGI 334
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG IVF SD G +I+ + DGS+ +R+T
Sbjct: 335 DVGGSYSPDGSRIVFESDRSGEQ--------------QIYMMNADGSNQRRITFFGGRAA 380
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 381 TPEWSPR 387
>gi|163849346|ref|YP_001637390.1| WD40 domain-containing protein [Chloroflexus aurantiacus J-10-fl]
gi|222527342|ref|YP_002571813.1| WD40 domain-containing protein [Chloroflexus sp. Y-400-fl]
gi|163670635|gb|ABY37001.1| WD40 domain protein beta Propeller [Chloroflexus aurantiacus
J-10-fl]
gi|222451221|gb|ACM55487.1| WD40 domain protein beta Propeller [Chloroflexus sp. Y-400-fl]
Length = 620
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 51/295 (17%)
Query: 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
N F+ V +RR + YR I L + V E S R+ Y
Sbjct: 355 NQHFLVVDSRRNSPQYRQIYLLNAVAADAGEQAAGAS-------------VVRISYSNAD 401
Query: 391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNS 446
G D N S +P S SP G +AFV P +Y+
Sbjct: 402 GNFPPSD--------NDSSSIPGSEYN------ASVSPDGTLLAFVSERQGIPQLYLRRL 447
Query: 447 DGSNRR------QVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+ S R Y + N S W P + + + E E I+ +DD+
Sbjct: 448 NVSPLRGYASPITAYDRPCNVESPTWSPDGRYLFWVTNC-EGNFEIYRATIVFYYIDDLF 506
Query: 499 G---VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
++ +R L+ N N+ F +SPDG+ I F S R G +Y+M+++G + RLT
Sbjct: 507 ASISLNNIRNLSNNAANDRFARISPDGRTIAFASDRDGNWEIYVMNSDGSN---VRRLTN 563
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGSAGR 609
+D WS + +AFASDRD G FE+Y+++ +G ++++ Q+ + R
Sbjct: 564 NAATDDSPTWSLTNQQLAFASDRD----GDFEIYILNVSDGAIVQQVTQNTAQDR 614
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 122/296 (41%), Gaps = 80/296 (27%)
Query: 441 VYVVNSDGSNRRQVYFKN----AFS--TVWDPVREAVVYTS--GGPEFASESSEVDIISI 492
+Y DG RR + F N AFS WDP + +V S P++ + ++ ++
Sbjct: 324 LYRATFDGGGRR-LTFNNGETVAFSWRRSWDPNQHFLVVDSRRNSPQY-RQIYLLNAVAA 381
Query: 493 NVDDVDGVSAVRRLTTNGKNNAFP----------------SVSPDGKWIVFRSTRTGYKN 536
+ + ++V R++ + + FP SVSPDG + F S R G
Sbjct: 382 DAGEQAAGASVVRISYSNADGNFPPSDNDSSSIPGSEYNASVSPDGTLLAFVSERQGIPQ 441
Query: 537 LYI--MDAEGGEGYGLHRLTEGPWSDTMCN-----WSPDGEWIAFASDRDNPGSGSFEMY 589
LY+ ++ GY +T D CN WSPDG ++ + ++ + G+FE+Y
Sbjct: 442 LYLRRLNVSPLRGYA-SPITA---YDRPCNVESPTWSPDGRYLFWVTNCE----GNFEIY 493
Query: 590 ------------LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637
+ +R L S +A SPDG++I F SD G
Sbjct: 494 RATIVFYYIDDLFASISLNNIRNL--SNNAANDRFARISPDGRTIAFASDRDG------- 544
Query: 638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAF 693
EI+ + DGS+++RLT N+ D +P W + N+Q AF
Sbjct: 545 -------NWEIYVMNSDGSNVRRLTNNAATDDSPTW-----------SLTNQQLAF 582
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 36/172 (20%)
Query: 516 PSVSPDGKWI-----------VFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEGPWSDTMC 563
P+ SPDG+++ ++R+T Y YI D + L+ +D
Sbjct: 471 PTWSPDGRYLFWVTNCEGNFEIYRATIVFY---YIDDLFASISLNNIRNLSNNAANDRFA 527
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
SPDG IAFASDRD G++E+Y+++ +G+ +R+L + +A + P +S + +
Sbjct: 528 RISPDGRTIAFASDRD----GNWEIYVMNSDGSNVRRL--TNNAATDDSPTWSLTNQQLA 581
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKL-DGSDLKRLTQNSFEDGTPAWG 674
F SD G EI+ + + DG+ ++++TQN+ +D P W
Sbjct: 582 FASDRDGDF--------------EIYILNVSDGAIVQQVTQNTAQDRWPLWA 619
>gi|429082950|ref|ZP_19146004.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
condimenti 1330]
gi|426548260|emb|CCJ72045.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
condimenti 1330]
Length = 430
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +A+ SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWYPDSQTLAYTSDQ----AGRPQVYKVNINGGAPQRVT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK +V S G I K+ L ++ L+
Sbjct: 329 WEGSQNQDAD--ISSDGKFMVMVSSNSGAQ--------------NIAKLDLVTGGVQTLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|170701073|ref|ZP_02892050.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria IOP40-10]
gi|172059754|ref|YP_001807406.1| translocation protein TolB [Burkholderia ambifaria MC40-6]
gi|226705867|sp|B1YTW7.1|TOLB_BURA4 RecName: Full=Protein TolB; Flags: Precursor
gi|170134013|gb|EDT02364.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria IOP40-10]
gi|171992271|gb|ACB63190.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria MC40-6]
Length = 431
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPYYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ +++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGG 396
>gi|62179322|ref|YP_215739.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113647|ref|ZP_09758817.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|75484379|sp|Q57RK3.1|TOLB_SALCH RecName: Full=Protein TolB; Flags: Precursor
gi|62126955|gb|AAX64658.1| tol protein required for outer membrane integrity, uptake of group
A colicins, and translocation of phage DNA to cytoplasm,
may be part of multiprotein peptidoglycan recycling
complex (Two domains) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713793|gb|EFZ05364.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 430
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ +VR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTL------ANGSVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 ASGQ---IRQITDGRSNNTEPTWFPDSQTLAFTSDQ----AGRPQVYKMNINGGAAQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 329 WEGSQNQDAD--VSSDGKFMVMVSSNNG 354
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGSVRQVASFPRHNGAPAFSPDGT 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQ+ + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKMNING----GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>gi|395010897|ref|ZP_10394212.1| tol-pal system beta propeller repeat protein TolB [Acidovorax sp.
CF316]
gi|394311005|gb|EJE48422.1| tol-pal system beta propeller repeat protein TolB [Acidovorax sp.
CF316]
Length = 422
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RI +V G ++V ++DG N + + S W P + Y S F S
Sbjct: 159 RIVYVTKTGNRYSLWVADADGENAQSALSSPEPIISPAWSPNGGQIAYVS----FESRKP 214
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
V + + SA RRL N + +N+ P+ SPDG+ + +R G LY++DA G
Sbjct: 215 VVYVHQV-------ASAQRRLVANFRGSNSAPAWSPDGRNLAVTLSRDGGSQLYLIDANG 267
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR G+ ++Y + G ++ +
Sbjct: 268 GE---PKRLMQSTGIDTEPMFSADGRSIYFVSDR----GGAPQVYRVPAGGGSAERVTFT 320
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + P SPDGK + + S GG
Sbjct: 321 GSYNIS--PSISPDGKWLAYISRVGG 344
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 140/361 (38%), Gaps = 66/361 (18%)
Query: 339 TRRPTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISPD--------SSR 383
TR P Y L+D+VK + + F + H + FI S+R
Sbjct: 100 TRTPDGRYDVRFRLWDVVKGQDLGGQSFAVSQADLRLVAHRIADFIYEKLTGERGVFSTR 159
Query: 384 VGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF-- 438
+ Y G D + + + SP P IS P++SP G +IA+V F
Sbjct: 160 IVYVTKTGNRYSLWVADADGENAQSALSSPEPIIS--------PAWSPNGGQIAYVSFES 211
Query: 439 --PGVYVVNSDGSNRRQVY-FKNAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINV 494
P VYV + RR V F+ + S W P G A S + +
Sbjct: 212 RKPVVYVHQVASAQRRLVANFRGSNSAPAWSP---------DGRNLAVTLSRDGGSQLYL 262
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
D +G R + + G + P S DG+ I F S R G +Y + A GG R+T
Sbjct: 263 IDANGGEPKRLMQSTGIDTE-PMFSADGRSIYFVSDRGGAPQVYRVPAGGGSA---ERVT 318
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
+ + SPDG+W+A+ S G+F+++++ +G I SA +P
Sbjct: 319 FTGSYNISPSISPDGKWLAYISRV----GGAFKLHVMDL-ASGTVNAITDTSAD--ENPS 371
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
F+P+ + IV+ + Q Q + LDG RL + P WG
Sbjct: 372 FAPNSRLIVYAT--------------QQQGREALMTTTLDGKIKARLAGQPGDIREPDWG 417
Query: 675 P 675
P
Sbjct: 418 P 418
>gi|383483193|ref|YP_005392107.1| translocation protein TolB [Rickettsia montanensis str. OSU 85-930]
gi|378935547|gb|AFC74048.1| translocation protein TolB [Rickettsia montanensis str. OSU 85-930]
Length = 444
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFSGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGSGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAP--------GKNKIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRAL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + ++ +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKESVVGDFSGISFAP---RFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ S P+W PR
Sbjct: 323 DVQRISFGSGSYAAPSWSPR 342
>gi|157146634|ref|YP_001453953.1| translocation protein TolB [Citrobacter koseri ATCC BAA-895]
gi|157083839|gb|ABV13517.1| hypothetical protein CKO_02400 [Citrobacter koseri ATCC BAA-895]
Length = 431
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSANG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|374854664|dbj|BAL57540.1| peptidase S41 [uncultured candidate division OP1 bacterium]
gi|374856135|dbj|BAL58989.1| peptidase S41 [uncultured candidate division OP1 bacterium]
Length = 1075
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 489 IISINVDDVDGVSA----VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
++ ++ DD+ V A RRLT+ +FP++SPDGK+I F G+ +Y+M AEG
Sbjct: 17 VVFVSEDDLWTVPAHGGVARRLTSGLGMASFPALSPDGKYIAFSGRDEGHTEVYLMPAEG 76
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G+ RLT + + WSPDG+ I FAS+ P + +Y + P G G +L+ +
Sbjct: 77 GQP---KRLTFLGSNSMVVGWSPDGK-ILFASNAAQPFLNIYLLYALSPQG-GTPELLPT 131
Query: 605 GSAGRANHPYFSPDGKSIV 623
G A + F P G ++
Sbjct: 132 GPALSIS---FGPKGGCVI 147
>gi|390953576|ref|YP_006417334.1| periplasmic component of the Tol biopolymer transport system
[Aequorivita sublithincola DSM 14238]
gi|390419562|gb|AFL80319.1| periplasmic component of the Tol biopolymer transport system
[Aequorivita sublithincola DSM 14238]
Length = 377
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 32/202 (15%)
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D I V D++G + +LT +A +VSP G IVF S R+G LY MD +G
Sbjct: 162 DSFDIFVADLEG-NITAQLTDEPGYDAEATVSPKGDKIVFTSMRSGDLELYTMDIDGK-- 218
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-----------DNPGSG-----SFEMYLI 591
+ ++T D +SPDG + F S R D G E+Y+
Sbjct: 219 -NVKQITNELGYDGGAFFSPDGSKLIFRSSRPKTEAEIKEYKDLLAQGLVQPTEMELYIC 277
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+ +G+ L +L G+A A P+F P GK I+F+S++ P + ++ I
Sbjct: 278 NADGSELSQLTHLGNANWA--PFFHPSGKKILFSSNFESERGFPFN----------LYLI 325
Query: 652 KLDGSDLKRLTQNSFEDGTPAW 673
DG +L+R+T D P +
Sbjct: 326 DTDGKNLERVTHGRTFDAFPVF 347
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 425 SFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFS--TVWDPVREAVVYTSGGP 478
+ SPKGD+I F +Y ++ DG N +Q+ + + + P +++ S P
Sbjct: 190 TVSPKGDKIVFTSMRSGDLELYTMDIDGKNVKQITNELGYDGGAFFSPDGSKLIFRSSRP 249
Query: 479 EFASESSEV-DIIS----------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
+ +E E D+++ + + + DG S + +LT G N P P GK I+F
Sbjct: 250 KTEAEIKEYKDLLAQGLVQPTEMELYICNADG-SELSQLTHLGNANWAPFFHPSGKKILF 308
Query: 528 RS---TRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583
S + G+ NLY++D +G L R+T G D +S DG+ +AF+S+R+N G
Sbjct: 309 SSNFESERGFPFNLYLIDTDGK---NLERVTHGRTFDAFPVFSNDGKKLAFSSNRNNGGG 365
Query: 584 GSFEMYL 590
+++
Sbjct: 366 RDTNLFI 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 39/184 (21%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + +V+TS S ++++ ++ D+DG + V+++T + SPDG +
Sbjct: 193 PKGDKIVFTS------MRSGDLELYTM---DIDGKN-VKQITNELGYDGGAFFSPDGSKL 242
Query: 526 VFRSTR-------TGYKNL-------------YIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+FRS+R YK+L YI +A+G E L L W+ +
Sbjct: 243 IFRSSRPKTEAEIKEYKDLLAQGLVQPTEMELYICNADGSELSQLTHLGNANWAPF---F 299
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA--NHPYFSPDGKSIV 623
P G+ I F+S+ ++ F +YLI +G L ++ GR P FS DGK +
Sbjct: 300 HPSGKKILFSSNFESERGFPFNLYLIDTDGKNLERVTH----GRTFDAFPVFSNDGKKLA 355
Query: 624 FTSD 627
F+S+
Sbjct: 356 FSSN 359
>gi|116688823|ref|YP_834446.1| translocation protein TolB [Burkholderia cenocepacia HI2424]
gi|254246220|ref|ZP_04939541.1| TolB [Burkholderia cenocepacia PC184]
gi|166229976|sp|A0K4X6.1|TOLB_BURCH RecName: Full=Protein TolB; Flags: Precursor
gi|116646912|gb|ABK07553.1| TolB, N-terminal domain protein [Burkholderia cenocepacia HI2424]
gi|124870996|gb|EAY62712.1| TolB [Burkholderia cenocepacia PC184]
Length = 431
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y + TG
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLY-VQDLQTG 365
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
I + R P F+ +G+ +++ + GG
Sbjct: 366 AANAIT--NTNRDESPSFAANGQYVLYATQSGG 396
>gi|291085672|ref|ZP_06353704.2| Tol-Pal system beta propeller repeat protein TolB [Citrobacter
youngae ATCC 29220]
gi|291070094|gb|EFE08203.1| Tol-Pal system beta propeller repeat protein TolB [Citrobacter
youngae ATCC 29220]
Length = 431
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVIQTL------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDI 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGAPQRIT 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK +V S G
Sbjct: 330 WEGSQNQDAD--VSSDGKFMVMVSSANG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 204 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 257
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 258 KLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 311
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +R+T G N VS DGK++V S+ G +++ D G
Sbjct: 312 RPQVYKVNVNG----GAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAG 367
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 368 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 417
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 418 TDGQVKFPAWSP 429
>gi|222149663|ref|YP_002550620.1| translocation protein TolB [Agrobacterium vitis S4]
gi|254764836|sp|B9JRY0.1|TOLB_AGRVS RecName: Full=Protein TolB; Flags: Precursor
gi|221736645|gb|ACM37608.1| periplasmic component of the Tol biopolymer transport system
[Agrobacterium vitis S4]
Length = 435
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 25/161 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS +PDG+ IVF S R G + LY+M+++G G R++ G S + WSP G+ IAF
Sbjct: 296 PSYAPDGRRIVFESDRGGRQQLYVMNSDGS---GQTRISFGEGSYSTPVWSPRGDLIAFT 352
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + ++ P+G+G R L + G N P ++P+G+ ++F G S
Sbjct: 353 KQ----SGGKFSIGVMKPDGSGERLL----TTGFHNEGPTWAPNGRVLMFFRQAAG-SGG 403
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P +++ I L G + + + SF PAW P
Sbjct: 404 P-----------QLYSIDLTGYNEQLVKTPSFAS-DPAWSP 432
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR LT P SP+ + + + S +Y++ E G+ +
Sbjct: 185 LAIMDQDGEN-VRMLTNTANLVLTPRFSPNRQEVTYMSFEGNQPRVYLLQLETGQREVVG 243
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + +D S + M + + +A
Sbjct: 244 NF---PGMTFSPRFSPDGQRVIMSLQQD-ANSNIYTM-----DLRSRTTTRLTSTAAIDT 294
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P ++PDG+ IVF SD GG +++ + DGS R++ TP
Sbjct: 295 SPSYAPDGRRIVFESDRGGRQ--------------QLYVMNSDGSGQTRISFGEGSYSTP 340
Query: 672 AWGPR 676
W PR
Sbjct: 341 VWSPR 345
>gi|421868662|ref|ZP_16300307.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Burkholderia cenocepacia H111]
gi|444359762|ref|ZP_21161058.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia BC7]
gi|444373339|ref|ZP_21172712.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia K56-2Valvano]
gi|358071227|emb|CCE51185.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Burkholderia cenocepacia H111]
gi|443591953|gb|ELT60802.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia K56-2Valvano]
gi|443601539|gb|ELT69679.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia BC7]
Length = 402
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 172 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 228
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 229 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQI 281
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 282 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 330
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ +++ + GG
Sbjct: 331 --QDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGG 367
>gi|284116165|ref|ZP_06386711.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
gi|283829531|gb|EFC33885.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
Length = 279
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 122/272 (44%), Gaps = 43/272 (15%)
Query: 424 PSFSPKGDRIAFVE----FPG---VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
P +SP GDRI F PG +Y++++DGSN ++V+ K R + ++
Sbjct: 21 PKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFKKEV-------ARTSPTWSPD 73
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYK 535
G + A E I + +DG R+ + P+ SPDG I F K
Sbjct: 74 GKQIAYSRWEQGKSFIYIASIDGKKE-ERIALGSQ----PAWSPDGTEIAFIEGAPRDPK 128
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA-SDRDNPGSGSFEM---YLI 591
+ ++D + E W WSP+G+ +AFA +R F++ Y++
Sbjct: 129 RISMLDVRMRKHKFFFPPKEPAWVRHHA-WSPEGDRLAFAWYNRIELRQEDFKLETIYIV 187
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS-DYGGISAEPISTPHQYQPYGEIFK 650
+ +GTGL+++I+ G RA P +SP G +++++ D + +IFK
Sbjct: 188 NRDGTGLQQIIEEGK--RAVEPVWSPRGDALLYSQLDKNDMQ--------------QIFK 231
Query: 651 IKLDGSDLKRLTQNSFEDGTPAW-GPRFIRPV 681
+ LDG + +L+ SF + W P F PV
Sbjct: 232 VTLDGGEPVQLSNPSFPNFARDWFDPAFALPV 263
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK---NLYIMDAEGGEGYGLHRLT 554
DG VR LT + + P SP G I+F S R G +LY+MDA+G + R+
Sbjct: 4 DGSEEVR-LTHHLARDGGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGS---NVQRVF 59
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614
+ + T WSPDG+ IA++ G +Y+ +G ++ + P
Sbjct: 60 KKEVARTSPTWSPDGKQIAYSRWE----QGKSFIYIASIDGKKEERI------ALGSQPA 109
Query: 615 FSPDGKSIVF 624
+SPDG I F
Sbjct: 110 WSPDGTEIAF 119
>gi|229586559|ref|YP_002845060.1| translocation protein TolB [Rickettsia africae ESF-5]
gi|259533877|sp|C3PN07.1|TOLB_RICAE RecName: Full=Protein TolB; Flags: Precursor
gi|228021609|gb|ACP53317.1| TolB protein precursor [Rickettsia africae ESF-5]
Length = 444
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + K+I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDENSEKIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|445495753|ref|ZP_21462797.1| protein TolB [Janthinobacterium sp. HH01]
gi|444791914|gb|ELX13461.1| protein TolB [Janthinobacterium sp. HH01]
Length = 421
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 45/260 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA----FSTVWDPVREAVVYTS 475
PS+SP G ++A+V F P VYV N NR + N S VW P + +
Sbjct: 196 PSWSPDGTKVAYVSFEQKKPVVYVQNL--INRARTVVANEKGSNSSPVWAPTGNKLAVS- 252
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
S+ I ++N D + ++R++ + ++ + +PDG I F S R+G
Sbjct: 253 -----LSKDGHTQIYTVNADGGN----LKRVSNSAGIDSEANFAPDGS-IYFMSDRSGGP 302
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+Y M+ +GG+ R+T + S DG+ +A+ S RD G++++Y +
Sbjct: 303 QIYRMNGDGGDA---KRVTFTGNYNISPRVSADGKTLAYISRRD----GNYQLYAMDLAS 355
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
++L S +P F+P+GK I++ + GG + + + +DG
Sbjct: 356 GQEQRLSDSTDD---QYPSFAPNGKYIMYATQAGGRKSLAV--------------VSVDG 398
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+RLT + P WGP
Sbjct: 399 RVKQRLTTQAGNIKEPTWGP 418
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 422 SFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVY---- 473
S P ++P G+++A +Y VN+DG N ++V + + + +Y
Sbjct: 238 SSPVWAPTGNKLAVSLSKDGHTQIYTVNADGGNLKRVSNSAGIDSEANFAPDGSIYFMSD 297
Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
SGGP+ I +N D D +R+T G N P VS DGK + + S R G
Sbjct: 298 RSGGPQ---------IYRMNGDGGD----AKRVTFTGNYNISPRVSADGKTLAYISRRDG 344
Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
LY MD G+ L T+ D +++P+G++I +A+ G + ++
Sbjct: 345 NYQLYAMDLASGQEQRLSDSTD----DQYPSFAPNGKYIMYATQ----AGGRKSLAVVSV 396
Query: 594 NGTGLRKLIQSGSAGRANHPYFSP 617
+G ++L + AG P + P
Sbjct: 397 DGRVKQRL--TTQAGNIKEPTWGP 418
>gi|372487169|ref|YP_005026734.1| tol-pal system beta propeller repeat protein TolB [Dechlorosoma
suillum PS]
gi|359353722|gb|AEV24893.1| tol-pal system beta propeller repeat protein TolB [Dechlorosoma
suillum PS]
Length = 427
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 42/259 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDPVREAVVYTSG 476
P++SP G R+A+V F P VYV ++ + RR V FK + S W P + T
Sbjct: 201 PAWSPDGGRLAYVSFENKKPVVYV-HTLATGRRTVVANFKGSNSAPAWAPDGRRLAVT-- 257
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ I +N D S +RL ++ + P SPDG+ I F S R G
Sbjct: 258 ----LSKDGGSQIYLVNADG----SGAQRLMSSSSIDTEPQFSPDGESIYFTSDRGGAPQ 309
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y + GG R+T + SPDG +AF S G F++ ++
Sbjct: 310 IYRVSVGGGTA---QRVTFDGSYNVSPRLSPDGRSMAFISRN----GGRFQLAIMDLASK 362
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
++ L S + P F+ +G+ I+F ++ GG G + + DG
Sbjct: 363 QVQILTDSH---KDESPSFASNGRMILFATEMGG--------------RGVLSAVSSDGR 405
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+RL+ ++ + PAWGP
Sbjct: 406 VKQRLSVSAGDVREPAWGP 424
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG +A L + + P+ SPDG + + S +Y+ G +
Sbjct: 178 LQIADADGQNAQPALVSK-EPIISPAWSPDGGRLAYVSFENKKPVVYVHTLATGRRTVVA 236
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
S++ W+PDG +A +D G ++YL++ +G+G ++L+ S S
Sbjct: 237 NFK---GSNSAPAWAPDGRRLAVTLSKD----GGSQIYLVNADGSGAQRLMSSSSID--T 287
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P FSPDG+SI FTSD GG +I+++ + G +R+T + + +P
Sbjct: 288 EPQFSPDGESIYFTSDRGGAP--------------QIYRVSVGGGTAQRVTFDGSYNVSP 333
Query: 672 AWGP 675
P
Sbjct: 334 RLSP 337
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 414 ISLFRFDGSFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPV 467
++ F+ S P+++P G R+A +Y+VN+DGS +++ ++ T + P
Sbjct: 235 VANFKGSNSAPAWAPDGRRLAVTLSKDGGSQIYLVNADGSGAQRLMSSSSIDTEPQFSPD 294
Query: 468 REAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
E++ +TS G P+ I ++V G +R+T +G N P +SPDG+
Sbjct: 295 GESIYFTSDRGGAPQ---------IYRVSV----GGGTAQRVTFDGSYNVSPRLSPDGRS 341
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
+ F S G L IMD + + LT+ D +++ +G I FA++ G
Sbjct: 342 MAFISRNGGRFQLAIMDLASKQ---VQILTD-SHKDESPSFASNGRMILFATEMGGRGV- 396
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ + +G ++L S SAG P + P
Sbjct: 397 ---LSAVSSDGRVKQRL--SVSAGDVREPAWGP 424
>gi|91205083|ref|YP_537438.1| translocation protein TolB [Rickettsia bellii RML369-C]
gi|157827580|ref|YP_001496644.1| translocation protein TolB [Rickettsia bellii OSU 85-389]
gi|119371058|sp|Q1RJW5.1|TOLB_RICBR RecName: Full=Protein TolB; Flags: Precursor
gi|166229987|sp|A8GXK7.1|TOLB_RICB8 RecName: Full=Protein TolB; Flags: Precursor
gi|91068627|gb|ABE04349.1| TolB protein precursor [Rickettsia bellii RML369-C]
gi|157802884|gb|ABV79607.1| translocation protein TolB precursor [Rickettsia bellii OSU 85-389]
Length = 444
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P FS D+I +V + + RR + ++ T + + S P FA +
Sbjct: 204 PRFSGSADKIFYVSY---------ATKRRTLVYEKDLKTGKESIVGDFAGISFAPRFAPD 254
Query: 484 SSEVDIISI------NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++SI ++ ++D + +LT N PS SPDG+ IVF S R G
Sbjct: 255 GRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGRRIVFNSDRNGVPQ 313
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP--- 593
LYIM+++G + R++ G S +WSP G++IAF +F + ++ P
Sbjct: 314 LYIMNSDGSN---VQRISFGGGSYMAPSWSPRGDYIAFTKIIRGSEGKTFNIGVMKPYPQ 370
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
+ ++I SG P +SP+G+ I+F +
Sbjct: 371 DDENSERVIASGYL--VESPCWSPNGRVIMFAKGW 403
>gi|206561547|ref|YP_002232312.1| translocation protein TolB [Burkholderia cenocepacia J2315]
gi|226705869|sp|B4EDC0.1|TOLB_BURCJ RecName: Full=Protein TolB; Flags: Precursor
gi|198037589|emb|CAR53527.1| putative periplasmic TolB protein [Burkholderia cenocepacia J2315]
Length = 431
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y + TG
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLY-VQDLQTG 365
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
I + R P F+ +G+ +++ + GG
Sbjct: 366 AANAIT--NTNRDESPSFAANGQYLLYATQSGG 396
>gi|373456238|ref|ZP_09548005.1| Tetratricopeptide TPR_2 repeat-containing protein [Caldithrix
abyssi DSM 13497]
gi|371717902|gb|EHO39673.1| Tetratricopeptide TPR_2 repeat-containing protein [Caldithrix
abyssi DSM 13497]
Length = 453
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
N AF + S DG I+++S + G +L+I+D E + ++T P + ++SPDG
Sbjct: 152 NEAFGAFSADGNQIIYQSDQNGNWDLFILDLTTNE---VKQITNSPAHEENPSFSPDGVH 208
Query: 572 IAFASDRDNPGSGSF-----EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
I + S D+ F ++Y++ L ++GS HP +S G IVF S
Sbjct: 209 IVYTSTEDDHRDVDFSQKLRDIYVMDLITGETENLTKNGSDDW--HPKYSFSGDFIVFVS 266
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ P Y+ Y +IF ++ +G LT++ F DG+PA P
Sbjct: 267 QRNDLREVPF-----YEMYSDIFIMQNNGRFQLSLTRDEFNDGSPALMP 310
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 121/285 (42%), Gaps = 52/285 (18%)
Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL----LLEN 406
+ DL N+ ++T SP H NP SPD + Y D + +L +++
Sbjct: 179 ILDLTTNEVKQITN--SP-AHEENPSFSPDGVHIVYTSTEDDHRDVDFSQKLRDIYVMDL 235
Query: 407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDP 466
I +++ D P +S GD I FV S ++ R+V F +S ++
Sbjct: 236 ITGETENLTKNGSDDWHPKYSFSGDFIVFV---------SQRNDLREVPFYEMYSDIF-- 284
Query: 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
++ +G + +S R +G P + + ++
Sbjct: 285 ----IMQNNGRFQ--------------------LSLTRDEFNDGSPALMPGSTDEEGTVI 320
Query: 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGS 585
F S R+G +Y MD E + +LT P +D + S G+ I F SDRD G+
Sbjct: 321 FDSDRSGSFAIYKMDIRTKE---ITQLTHNPDVNDVSPDVSSSGDKITFFSDRD----GN 373
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
+E+YL++ +G+ ++L + + +P FSPDG I+F SD G
Sbjct: 374 YEIYLMNNDGSAQQRL--TSNPAEDLNPVFSPDGNKILFHSDREG 416
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 72/180 (40%), Gaps = 29/180 (16%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTG---------YKNLYIMDAEGGEGYGLHRLTEG 556
LT NG ++ P S G +IVF S R Y +++IM G L R
Sbjct: 243 LTKNGSDDWHPKYSFSGDFIVFVSQRNDLREVPFYEMYSDIFIMQNNGRFQLSLTRDEFN 302
Query: 557 PWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
S + S D E + F SDR SGSF +Y + + +L + + P
Sbjct: 303 DGSPALMPGSTDEEGTVIFDSDR----SGSFAIYKMDIRTKEITQLTHNPDVNDVS-PDV 357
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S G I F SD G Y EI+ + DGS +RLT N ED P + P
Sbjct: 358 SSSGDKITFFSDRDG----------NY----EIYLMNNDGSAQQRLTSNPAEDLNPVFSP 403
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
SA +RLT+N + P SPDG I+F S R G +LY++D
Sbjct: 384 SAQQRLTSNPAEDLNPVFSPDGNKILFHSDREGNFDLYLLD 424
>gi|254483262|ref|ZP_05096494.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium
HTCC2148]
gi|214036485|gb|EEB77160.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium
HTCC2148]
Length = 342
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 49/263 (18%)
Query: 426 FSPKGDRIAFVEFPGVYVVN----SDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
F+PK A G V N ++ + R Y + A S P ++A+VY EFA
Sbjct: 49 FTPKSTTAALDTTDGPRVTNLKQLTNNTERSNQYNRPALS----PNQDAMVYV----EFA 100
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + S+ G A ++++ N P+ +P+G++++F S R+G
Sbjct: 101 GGKSSIYRQSL------GSPAKSPISSDAGMNLTPAFTPNGRFLIFSSDRSGESQSLWRK 154
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSP----DGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
G G G+ ++T S +W P DGE I F S R N + S ++ I+ NG
Sbjct: 155 RSDGAG-GITQIT----SSNSFDWQPAIASDGETIIFQSHRKNNQAAS--IWSINMNGGL 207
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L +L + GR+ P SPDG+ IVF P +++ +++DGS
Sbjct: 208 LTQLTE----GRS--PSISPDGRRIVFVR------------PDASTGKDQVWSMQVDGSG 249
Query: 658 LKRLTQNSFEDGTPAWGP--RFI 678
L +L+ + D P+W P R+I
Sbjct: 250 LTQLSSGNANDVDPSWHPNGRYI 272
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 40/315 (12%)
Query: 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390
+++F+AV T + T++ V N +LT + P +SP+ + Y +
Sbjct: 42 DDEFVAVFTPKSTTAALDTTDGPRVTN-LKQLTNNTERSNQYNRPALSPNQDAMVYVEFA 100
Query: 391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-----EFPGVYVVN 445
GG + Q L KSP+ + P+F+P G + F E ++
Sbjct: 101 GG--KSSIYRQSLGSPAKSPISSDAGMNLT---PAFTPNGRFLIFSSDRSGESQSLWRKR 155
Query: 446 SDGSNR-RQVYFKNAFSTVWDPV----REAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
SDG+ Q+ N+F W P E +++ S + I SIN++
Sbjct: 156 SDGAGGITQITSSNSFD--WQPAIASDGETIIFQS----HRKNNQAASIWSINMN----- 204
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFR--STRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
+ T G++ PS+SPDG+ IVF TG ++ M +G GL +L+ G
Sbjct: 205 GGLLTQLTEGRS---PSISPDGRRIVFVRPDASTGKDQVWSMQVDGS---GLTQLSSGNA 258
Query: 559 SDTMCNWSPDGEWIAFASDR---DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
+D +W P+G +I FASD + ++++ +GT +L ++ S A P F
Sbjct: 259 NDVDPSWHPNGRYIVFASDAMVVQGDVFADYNIWIMRADGTQREQLTENFSHDDA--PVF 316
Query: 616 SPDGKSIVFTSDYGG 630
G++IVF S+ GG
Sbjct: 317 DRRGRTIVFRSNRGG 331
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 125/265 (47%), Gaps = 42/265 (15%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV------VYTSGG 477
P+ SP D + +VEF G + +Y ++ S P+ +T G
Sbjct: 85 PALSPNQDAMVYVEFAG---------GKSSIYRQSLGSPAKSPISSDAGMNLTPAFTPNG 135
Query: 478 P--EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
F+S+ S + S+ DG + ++T++ + P+++ DG+ I+F+S R +
Sbjct: 136 RFLIFSSDRSG-ESQSLWRKRSDGAGGITQITSSNSFDWQPAIASDGETIIFQSHRKNNQ 194
Query: 536 --NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+++ ++ GG L +LTEG + SPDG I F R + +G +++ +
Sbjct: 195 AASIWSINMNGGL---LTQLTEG----RSPSISPDGRRIVFV--RPDASTGKDQVWSMQV 245
Query: 594 NGTGLRKLIQSGSAGRANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
+G+GL +L S+G AN P + P+G+ IVF SD + + + + I+ +
Sbjct: 246 DGSGLTQL----SSGNANDVDPSWHPNGRYIVFASDAMVVQGDVFADYN-------IWIM 294
Query: 652 KLDGSDLKRLTQNSFEDGTPAWGPR 676
+ DG+ ++LT+N D P + R
Sbjct: 295 RADGTQREQLTENFSHDDAPVFDRR 319
>gi|421588658|ref|ZP_16033918.1| TolB-like protein [Rhizobium sp. Pop5]
gi|403706585|gb|EJZ21812.1| TolB-like protein [Rhizobium sp. Pop5]
Length = 276
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
RL T + + SPDG+ + + R ++Y + +GGE RLT G + +
Sbjct: 103 RLITENLPSYWHGWSPDGRQLAYCGIRDDVFDIYTISVDGGEET---RLTHGEGRNDGPD 159
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WS DG+WI F S R +G +++ IHP+GTGL+++ HP SP+ ++
Sbjct: 160 WSTDGQWIYFNSSR----TGLMQIWRIHPDGTGLQQVTSDDQGNWFAHP--SPNNDKVLI 213
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT---PAWGP 675
+S +P H + + +DG++LK L + GT P W P
Sbjct: 214 ------LSYDPSVFDHPRDLDVRLRLMDMDGANLKTLFELFGGQGTINVPCWSP 261
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
++ G + A D+ I VDG R G+N+ P S DG+WI F S+RT
Sbjct: 116 WSPDGRQLAYCGIRDDVFDIYTISVDGGEETRLTHGEGRNDG-PDWSTDGQWIYFNSSRT 174
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW----SPDGEWIAFASDR----DNPGSG 584
G ++ + +G GL ++T SD NW SP+ + + S D+P
Sbjct: 175 GLMQIWRIHP---DGTGLQQVT----SDDQGNWFAHPSPNNDKVLILSYDPSVFDHPRDL 227
Query: 585 SFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFT 625
+ L+ +G L+ L + G G N P +SPDG +
Sbjct: 228 DVRLRLMDMDGANLKTLFELFGGQGTINVPCWSPDGDEFAYV 269
>gi|153008549|ref|YP_001369764.1| translocation protein TolB [Ochrobactrum anthropi ATCC 49188]
gi|404320482|ref|ZP_10968415.1| translocation protein TolB [Ochrobactrum anthropi CTS-325]
gi|166229982|sp|A6WY81.1|TOLB_OCHA4 RecName: Full=Protein TolB; Flags: Precursor
gi|151560437|gb|ABS13935.1| Tol-Pal system beta propeller repeat TolB [Ochrobactrum anthropi
ATCC 49188]
Length = 443
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + + RLT + + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RSTTRLTNSQAIDTSASYSPDGSQIVFSSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISAGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES ++ + + + D DG + VR ++ + P SP+ + + + S G +
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGAN-VRYISDGRAISLTPRFSPNRQEVTYMSFEGGSPKV 236
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y++ E G+ + P +SPDG+ + + +D+ + + M L + + T
Sbjct: 237 YLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTR 293
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L + S +SPDG IVF+SD GG +P +++ + DGS+
Sbjct: 294 L-----TNSQAIDTSASYSPDGSQIVFSSDRGG------------RP--QLYVMGADGSN 334
Query: 658 LKRLTQNSFEDGTPAWGPR 676
+R++ TP W PR
Sbjct: 335 PRRISAGDGSYSTPVWSPR 353
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
R++S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRYISDGRAISLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRSTTRLTNSQAIDTSASYSPDGSQIVFSSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISAGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|83816740|ref|YP_444453.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855]
gi|83758134|gb|ABC46247.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855]
Length = 995
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYG-LHRL 553
D G + + T G+ N PS+SPDG+++ F S R + NLY+ DAE GE L R
Sbjct: 216 DSAGQTVLAPETNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRA 275
Query: 554 -TEGPWS-----DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
T G ++ + WSPDG +AF S D G ++ + + + +
Sbjct: 276 GTTGHFNALRFISSSGTWSPDGRRLAFVSSED----GDNQITVWNVVDEEIERSFSVDGV 331
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+P +SPDG + F GGIS +++ + L+ +++LT + +
Sbjct: 332 TSMKNPAWSPDGTRLAFAGTDGGIS--------------DLYVLNLETESVRQLTNDRYA 377
Query: 668 DGTPAWGP 675
D P W P
Sbjct: 378 DLQPTWAP 385
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 70/253 (27%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSG 476
RF S ++SP G R+AFV + DG N+ TVW+ V E + +
Sbjct: 284 LRFISSSGTWSPDGRRLAFVS-------SEDGDNQ---------ITVWNVVDEEIERSF- 326
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
VDGV++++ P+ SPDG + F T G +
Sbjct: 327 -------------------SVDGVTSMKN----------PAWSPDGTRLAFAGTDGGISD 357
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG------SGSFEMYL 590
LY+++ E + +LT ++D W+PDGE IAFA+DR S + ++ L
Sbjct: 358 LYVLNLETES---VRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETLSPSSNMDLGL 414
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
+ + + G A N P F+PDG+S+ F SD G + ++++
Sbjct: 415 VDVSSGEVTVRAPFGDALHHN-PQFAPDGQSLYFISDQDG--------------FKDVYR 459
Query: 651 IKLDGSDLKRLTQ 663
+ L D R+T+
Sbjct: 460 MDLSSGDRFRVTR 472
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFVSPKTHHLNP--FIS--- 378
P+ SP + +++A + R S+ ++ + D + I EL R + T H N FIS
Sbjct: 236 PSLSP-DGRYVAFISERELFSF-NLYVADAETGEVIAELDR--AGTTGHFNALRFISSSG 291
Query: 379 ---PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG----SFPSFSPKGD 431
PD R+ + + EDG+NQ+ + N+ + S F DG P++SP G
Sbjct: 292 TWSPDGRRLAF------VSSEDGDNQITVWNVVDEEIERS-FSVDGVTSMKNPAWSPDGT 344
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFASES- 484
R+AF G +YV+N + + RQ+ W P E + + + E E+
Sbjct: 345 RLAFAGTDGGISDLYVLNLETESVRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETL 404
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
S + + + DV R + P +PDG+ + F S + G+K++Y MD
Sbjct: 405 SPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGFKDVYRMDLSS 464
Query: 545 GEGYGLHRLTEG 556
G+ + + RL G
Sbjct: 465 GDRFRVTRLKTG 476
>gi|134100530|ref|YP_001106191.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338]
gi|291004991|ref|ZP_06562964.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338]
gi|133913153|emb|CAM03266.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338]
Length = 1054
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
VD++++ G A RLT + A P SPDG IVF+S + G +L + D +G
Sbjct: 46 VDLLNVLWSIPIGGGAAVRLTDVLQEAAEPDFSPDGSRIVFQSYQDGNFHLCLADRDG-- 103
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
GL RLT GP +SPDG +AFA++ D G + ++++ TG SGS
Sbjct: 104 -RGLTRLTSGPTDQREPRFSPDGTRVAFAAETD----GRYGIHVL-TLATGEIAAWTSGS 157
Query: 607 AGRANHPYFSPDGKSIVFTS 626
A A P ++PDG +I FTS
Sbjct: 158 AQEAQ-PVWTPDGSAIAFTS 176
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 471 VVYTSGGPEFASESSEVDIIS-------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523
V+ + P+F+ + S + S + + D DG + RLT+ + P SPDG
Sbjct: 68 VLQEAAEPDFSPDGSRIVFQSYQDGNFHLCLADRDG-RGLTRLTSGPTDQREPRFSPDGT 126
Query: 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF-ASDRDNPG 582
+ F + G ++++ GE + T G + W+PDG IAF +SD D P
Sbjct: 127 RVAFAAETDGRYGIHVLTLATGE---IAAWTSGSAQEAQPVWTPDGSAIAFTSSDDDTP- 182
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
+ ++ H N R+ + + S G P FSPDG+
Sbjct: 183 -QAIDLVDAHGN----RRTLVTVSEGDIAGPTFSPDGR 215
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+ ++G N P+ SPDG+ +V+ R G +L++ D E G+ RLT+ +T +
Sbjct: 338 VVSDGGYNTGPAWSPDGRTLVYAGDRAGTLDLWLHDLETGQD---RRLTDLEGDETGAVF 394
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG +AF S R ++ + +RK++ G P FS DG +
Sbjct: 395 SPDGSAVAFLSGR--------SVHTVDVASGAVRKVV--GPLNAPGRPSFSADGTRVCLA 444
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G R + NA +V+P +V L+ + GG RLT+
Sbjct: 18 GAPGSREVVVTQATNASAAVAPGAGSVVVDLLNV----LWSIPIGGGAAV---RLTDVLQ 70
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
++SPDG I F S +D G+F + L +G GL +L + R P FSPD
Sbjct: 71 EAAEPDFSPDGSRIVFQSYQD----GNFHLCLADRDGRGLTRLTSGPTDQR--EPRFSPD 124
Query: 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + F ++ G YG I + L ++ T S ++ P W P
Sbjct: 125 GTRVAFAAETDGR-------------YG-IHVLTLATGEIAAWTSGSAQEAQPVWTP 167
>gi|383312361|ref|YP_005365162.1| translocation protein TolB [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931021|gb|AFC69530.1| translocation protein TolB [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 444
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVDGVSA-VRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D V+ + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLVTKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGNGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSRAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRAL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLVTK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|298242339|ref|ZP_06966146.1| peptidase S9 prolyl oligopeptidase active site domain protein
[Ktedonobacter racemifer DSM 44963]
gi|297555393|gb|EFH89257.1| peptidase S9 prolyl oligopeptidase active site domain protein
[Ktedonobacter racemifer DSM 44963]
Length = 682
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 133/321 (41%), Gaps = 89/321 (27%)
Query: 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406
R+I + DL + +FI+ P ISPD +V Y R + + + +
Sbjct: 3 RNITIEDLYRMQFID------------RPRISPDGKQVAYVVTRIDDKKHAYRSSIWI-- 48
Query: 407 IKSPLPDISLFRFDG-----SFPSFSPKGDRIAFV----------------------EFP 439
SP RF S P++SP G +AFV + P
Sbjct: 49 --SPTEGGEARRFTQETELTSAPTWSPDGRWLAFVAKRESSDQPSTTEKKEQKKPGKDKP 106
Query: 440 GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSG-GPEFASESSEVDIISINVDD 496
++V+ +DG RQ+ F A S W P + +++++ GP A E +E
Sbjct: 107 QIWVMPTDGGEARQLTFMEHGASSPAWSPDGKHLLFSAQVGP--ADEETE---------- 154
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGY-----KNLYIMDAEGGEGYGL 550
+GK A P V D W +R G+ +L+++ EGGE
Sbjct: 155 ------------DGK--ALPKVHVIDQLW--YRLDGVGFIYERRAHLFLIPREGGEP--- 195
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDN-----PGSGSFEMYLIHPNGTGLRKLIQSG 605
+LT+G W+D WSPDG+ I F SDR+ PG+ + + L G +++ G
Sbjct: 196 QQLTDGDWNDGDAAWSPDGKQITFTSDRNEERWRIPGADIYVLALQDNKVVGEPRVLTDG 255
Query: 606 SAGRANHPYFSPDGKSIVFTS 626
S G A+ P +S DG+ I F +
Sbjct: 256 SMGCAS-PSWSADGQQIAFIA 275
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 48/201 (23%)
Query: 516 PSVSPDGKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
P +SPDGK + + TR K +++I EGGE R T+ + WSPDG
Sbjct: 19 PRISPDGKQVAYVVTRIDDKKHAYRSSIWISPTEGGEA---RRFTQETELTSAPTWSPDG 75
Query: 570 EWIAFASDRDN--------------PGSGSFEMYLIHPNGTGLRKL--IQSGSAGRANHP 613
W+AF + R++ PG +++++ +G R+L ++ G A+ P
Sbjct: 76 RWLAFVAKRESSDQPSTTEKKEQKKPGKDKPQIWVMPTDGGEARQLTFMEHG----ASSP 131
Query: 614 YFSPDGKSIVFTSDYG--------GISAEPISTPHQ-----------YQPYGEIFKIKLD 654
+SPDGK ++F++ G G + + Q Y+ +F I +
Sbjct: 132 AWSPDGKHLLFSAQVGPADEETEDGKALPKVHVIDQLWYRLDGVGFIYERRAHLFLIPRE 191
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + ++LT + DG AW P
Sbjct: 192 GGEPQQLTDGDWNDGDAAWSP 212
>gi|170732122|ref|YP_001764069.1| translocation protein TolB [Burkholderia cenocepacia MC0-3]
gi|226705868|sp|B1JWH3.1|TOLB_BURCC RecName: Full=Protein TolB; Flags: Precursor
gi|169815364|gb|ACA89947.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia MC0-3]
Length = 431
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y + TG
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLY-VQDLQTG 365
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
I + R P F+ +G+ +++ + GG
Sbjct: 366 AANAIT--NTNRDESPSFAANGQYLLYATQSGG 396
>gi|167623622|ref|YP_001673916.1| translocation protein TolB [Shewanella halifaxensis HAW-EB4]
gi|189035988|sp|B0TPX8.1|TOLB_SHEHH RecName: Full=Protein TolB; Flags: Precursor
gi|167353644|gb|ABZ76257.1| Tol-Pal system beta propeller repeat TolB [Shewanella halifaxensis
HAW-EB4]
Length = 440
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 56/288 (19%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR-QVY 455
DG N+ +L ++SP P +S PS+SP G R+A+V F NR+ ++Y
Sbjct: 198 DGYNEQML--LRSPEPLMS--------PSWSPDGQRLAYVSF----------ENRKAEIY 237
Query: 456 FKNAFS------TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
+N ++ T +D + A V++ G + A S+ + V D+ A++R+T +
Sbjct: 238 VQNIYTQQRTNVTSFDGINGAPVFSPDGKKLAVTLSKDGQPEVYVVDI-ATKAIKRVTNH 296
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPD 568
+ PS PDGK ++ S R G LY + + G+ + RLT EG W + + +PD
Sbjct: 297 YAIDTEPSWFPDGKSLLITSERGGRPQLYRVFLDSGK---ISRLTFEGEW-NLGGSIAPD 352
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSD 627
G I F N +G F + + + +Q ++ R + P +P+G +++ +
Sbjct: 353 GRSIIFV----NRTNGKFNIARMDLE----TRFMQVLTSTRLDESPSVAPNGTMVIYGTT 404
Query: 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Y G + + +DG RL E +P+W P
Sbjct: 405 YQGKQV--------------LAAVSMDGRFKARLPVGQGEVKSPSWSP 438
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG--SFPSFSPKG 430
++P SPD R+ Y + E+ ++ ++NI + ++ FDG P FSP G
Sbjct: 213 MSPSWSPDGQRLAY------VSFENRKAEIYVQNIYTQ-QRTNVTSFDGINGAPVFSPDG 265
Query: 431 DRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
++A P VYVV+ ++V A T W P ++++ TS G P+
Sbjct: 266 KKLAVTLSKDGQPEVYVVDIATKAIKRVTNHYAIDTEPSWFPDGKSLLITSERGGRPQ-- 323
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
+ + +D + RLT G+ N S++PDG+ I+F + G N+ MD
Sbjct: 324 -------LYRVFLDS----GKISRLTFEGEWNLGGSIAPDGRSIIFVNRTNGKFNIARMD 372
Query: 542 AE 543
E
Sbjct: 373 LE 374
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
I + G K+ Y + +GY L P +WSPDG+ +A+ S +
Sbjct: 177 IAYVVVNHGEKSPYKLMISDYDGYNEQMLLRSPEPLMSPSWSPDGQRLAYVSFENRKA-- 234
Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
E+Y+ N ++ + G P FSPDGK + T G QP
Sbjct: 235 --EIYV--QNIYTQQRTNVTSFDGINGAPVFSPDGKKLAVTLSKDG------------QP 278
Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
E++ + + +KR+T + D P+W P
Sbjct: 279 --EVYVVDIATKAIKRVTNHYAIDTEPSWFP 307
>gi|398308157|ref|ZP_10511631.1| acylaminoacyl-peptidase [Bacillus mojavensis RO-H-1]
Length = 658
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 42/200 (21%)
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
T K +A P SPDG+ I F S R G LYIM AEGGE +LT+ P+ + W
Sbjct: 60 TYGEKRSADPRWSPDGRQIAFVSDRDGDVSQLYIMSAEGGEA---KKLTDIPYGVSQPVW 116
Query: 566 SPDGEWIAFAS---------DRDNPGSGSFEMYLIH-----PNGTGLRK---------LI 602
SPDGE + D++ SFE +H +G GL + +
Sbjct: 117 SPDGESVLVTVSLGDGESVYDQEKTEPDSFEPVEVHGLAYKRDGKGLTRGAYAQLVLVSV 176
Query: 603 QSGSAG-----RANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+SG +A+H P FSPDGKS+VF+++ + PH ++ + L+
Sbjct: 177 KSGEVKQLTNEKADHFDPAFSPDGKSLVFSANM--TETDDARKPH------DVCMLSLET 228
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
DLK +T + G ++ P
Sbjct: 229 EDLKLITSHRGSFGPSSFSP 248
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 46/193 (23%)
Query: 516 PSVSPDGKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWS-----DTMCN 564
P +PDGK + + ++ + N+++ DA+ G T PW+
Sbjct: 19 PQYAPDGKRVAYVKSQANKEKDSYTSNIWVYDADSG--------TSAPWTYGEKRSADPR 70
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
WSPDG IAF SDRD S ++Y++ G +KL + P +SPDG+S++
Sbjct: 71 WSPDGRQIAFVSDRDGDVS---QLYIMSAEGGEAKKLTDIPYG--VSQPVWSPDGESVLV 125
Query: 625 TSDYG---GISAEPISTPHQYQP-------------------YGEIFKIKLDGSDLKRLT 662
T G + + + P ++P Y ++ + + ++K+LT
Sbjct: 126 TVSLGDGESVYDQEKTEPDSFEPVEVHGLAYKRDGKGLTRGAYAQLVLVSVKSGEVKQLT 185
Query: 663 QNSFEDGTPAWGP 675
+ PA+ P
Sbjct: 186 NEKADHFDPAFSP 198
>gi|398817478|ref|ZP_10576095.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Brevibacillus
sp. BC25]
gi|398029924|gb|EJL23367.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Brevibacillus
sp. BC25]
Length = 671
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 47/267 (17%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
+P +SPD + Y + + + N L L + + P +FP +SP G +I
Sbjct: 21 DPQLSPDGKTLAYVENQIDESHAY-QNHLFLRRLDADDPQPLTSGSRDTFPRWSPDGSKI 79
Query: 434 AFVE----FPGVYVVNSDGSNRRQV-YFKNAFST-VWDPVREAVVYTS---GGPEFASES 484
+FV P ++++++ G RQ+ KN S W P + +V++S G FA
Sbjct: 80 SFVSNRSGKPQIWLIDAHGGEARQLTRCKNGVSNPTWSPDGQYIVFSSILDEGETFA--- 136
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY-----KNLYI 539
D++G T K NA G+ + ++S G+ K L I
Sbjct: 137 -----------DLEG--------TEEKENA--KAIHVGR-MKYKSDDLGFIYEKNKQLAI 174
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR--DNPGSGSFEMYLIHPNGTG 597
+ E GE + L++GP++ T+ +WSPDG+WIA ++R D S +++LI G
Sbjct: 175 VHVETGE---ITPLSDGPYNHTIGSWSPDGKWIAVTANRAEDPDFQHSADVFLIPSEGGE 231
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
+KL + S G +P +S DGK + +
Sbjct: 232 WKKL--TNSKGIFAYPTWSHDGKKLAY 256
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 19/118 (16%)
Query: 516 PSVSPDGKWIVFRSTRT----GYKN---LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
P +SPDGK + + + Y+N L +DA+ + LT G DT WSPD
Sbjct: 22 PQLSPDGKTLAYVENQIDESHAYQNHLFLRRLDADDPQ-----PLTSGS-RDTFPRWSPD 75
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
G I+F S+R SG +++LI +G R+L + + ++P +SPDG+ IVF+S
Sbjct: 76 GSKISFVSNR----SGKPQIWLIDAHGGEARQLTRCKNG--VSNPTWSPDGQYIVFSS 127
>gi|91787860|ref|YP_548812.1| translocation protein TolB [Polaromonas sp. JS666]
gi|118574592|sp|Q12C28.1|TOLB_POLSJ RecName: Full=Protein TolB; Flags: Precursor
gi|91697085|gb|ABE43914.1| TolB-like protein [Polaromonas sp. JS666]
Length = 426
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 114/280 (40%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V ++V +SDG + + S W P G + A S
Sbjct: 164 RIAYVTKTAQRFNLWVADSDGEGAQSALTSPEPIISPSWSP---------NGSQLAYVSF 214
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E I DV + RRL N + +N+ P+ SPDGK +V +R G +Y + G
Sbjct: 215 ESRKPVIYAHDV--ATGKRRLLANFRGSNSAPAWSPDGKQLVATLSRDGGSQIYALGLSG 272
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
G+ RLT+ DT +SPDG +I F SDR G+ ++Y + P G ++ +
Sbjct: 273 GD---PKRLTQSSSIDTEPAYSPDGRYIYFVSDR----GGAPQIYRMSPGGGNPERVTFT 325
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGI-----------SAEPIS----------TPH--- 640
G G P SPDG+ + + S GG +A PI+ P+
Sbjct: 326 G--GYNISPAISPDGRWLAYVSRVGGAFKLHVMELASGTATPITDTTADESPSFAPNSRL 383
Query: 641 -----QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q Q + LDG RL+ + P WGP
Sbjct: 384 IVYATQQQGREALMTTTLDGKIKARLSGAGGDIREPDWGP 423
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 56/211 (26%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
D + + + SP P IS PS+SP G ++A+V F P +Y + + G R
Sbjct: 181 DSDGEGAQSALTSPEPIIS--------PSWSPNGSQLAYVSFESRKPVIYAHDVATGKRR 232
Query: 452 RQVYFKNAFST-VWDPVREAVVYT--------------SGG-PEFASESSEVDIISIN-- 493
F+ + S W P + +V T SGG P+ ++SS +D
Sbjct: 233 LLANFRGSNSAPAWSPDGKQLVATLSRDGGSQIYALGLSGGDPKRLTQSSSIDTEPAYSP 292
Query: 494 -------VDDVDGVSAVRRLTTNGKN----------NAFPSVSPDGKWIVFRSTRTGYKN 536
V D G + R++ G N N P++SPDG+W+ + S G
Sbjct: 293 DGRYIYFVSDRGGAPQIYRMSPGGGNPERVTFTGGYNISPAISPDGRWLAYVSRVGGAFK 352
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
L++M+ G T P +DT + SP
Sbjct: 353 LHVMELASG--------TATPITDTTADESP 375
>gi|224370139|ref|YP_002604303.1| AglW [Desulfobacterium autotrophicum HRM2]
gi|223692856|gb|ACN16139.1| AglW [Desulfobacterium autotrophicum HRM2]
Length = 447
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 51/255 (20%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREA 470
F G + FS R+AFV G ++V DG N RQV N+ S W +
Sbjct: 171 FHLTGKWGVFS---SRLAFVSTKGKNKEIFVAEFDGHNSRQVTRLNSISISPAWSSDGQW 227
Query: 471 VVYTS---GGPEF------ASESSEVDIISINV--------------------DDVDGVS 501
+ YTS G P+ + + V+ +N+ ++ ++
Sbjct: 228 LAYTSYAGGNPDIYIKNLIQNRGAVVNFKGMNITPAWIPGQFSLAAALSFENDQEIYLLT 287
Query: 502 A----VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
+++LT + + P SPDGK + F S R G +YI D E + RLT
Sbjct: 288 GKGRIIKKLTNSWGIDVSPCFSPDGKKMAFVSKRAGTPQVYIQDMESDT---VRRLTFTG 344
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+T WSPDG+ IA+ +G +Y++ +G+G+ +L + S G P +SP
Sbjct: 345 RYNTSPAWSPDGDKIAYVG----IANGEINIYVVGIDGSGVVQL--TSSTGDNEDPCWSP 398
Query: 618 DGKSIVFTSDYGGIS 632
D I FTS G++
Sbjct: 399 DAGLIAFTSTREGVA 413
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGG 477
P FSP G ++AFV P VY+ + + R++ F ++T W P + + Y
Sbjct: 306 PCFSPDGKKMAFVSKRAGTPQVYIQDMESDTVRRLTFTGRYNTSPAWSPDGDKIAYV--- 362
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ E++I + +D S V +LT++ +N P SPD I F STR G +
Sbjct: 363 ---GIANGEINIYVVGIDG----SGVVQLTSSTGDNEDPCWSPDAGLIAFTSTREGVARI 415
Query: 538 YIMDAEGGE 546
Y+M A GGE
Sbjct: 416 YVMTATGGE 424
>gi|91773135|ref|YP_565827.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM
6242]
gi|91712150|gb|ABE52077.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM
6242]
Length = 416
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 32/181 (17%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP----GVYVVNSDGSNRR 452
DG+N L L + R D ++ G++IAFV G++++N DGS++
Sbjct: 196 DGSNNLKL----------TTSRKDNIGATWRSDGEKIAFVSNESGNGGIWIMNKDGSDKI 245
Query: 453 QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK- 511
Q+ +A++ W P +VY G E + SI V D DG S + LT N K
Sbjct: 246 QLVDGSAYNIDWSPDGTKIVYVKGDHENYTS-------SIWVMDTDG-SNKKPLTNNSKY 297
Query: 512 --NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
+ ++P SPDG IVF S G ++IM+++G + R+ EG M WSP G
Sbjct: 298 FVSQSYPDWSPDGSKIVFNSGNIGEYEIWIMNSDGTDQI---RIDEG----LMPQWSPKG 350
Query: 570 E 570
+
Sbjct: 351 D 351
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 60/284 (21%)
Query: 426 FSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYF-----------KNAFSTVWDPVREA 470
SP G ++ FV +++++ DGS++RQ+ + + W P
Sbjct: 93 LSPDGTKLLFVSNATGNHELWIMDIDGSDKRQLTYGAHLENNLLGLAGRWGISWSPGSSQ 152
Query: 471 VVYTSGGPEFASESSEVDI------------ISINVD----DVDGVSAVRRLTTNGKNNA 514
+VY S E + V+I +S + D D DG + ++ LTT+ K+N
Sbjct: 153 IVYVSASSENRNVWETVEINGKKEQMFNISKVSKDYDIWIVDHDGSNNLK-LTTSRKDNI 211
Query: 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
+ DG+ I F S +G ++IM+ +G + +L +G S +WSPDG I +
Sbjct: 212 GATWRSDGEKIAFVSNESGNGGIWIMNKDGSDKI---QLVDG--SAYNIDWSPDGTKIVY 266
Query: 575 AS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA-GRANHPYFSPDGKSIVFTSDYGGIS 632
D +N S ++++ +G+ + L + ++P +SPDG IVF S G I
Sbjct: 267 VKGDHENYTS---SIWVMDTDGSNKKPLTNNSKYFVSQSYPDWSPDGSKIVFNS--GNIG 321
Query: 633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+Y EI+ + DG+D R+ + P W P+
Sbjct: 322 --------EY----EIWIMNSDGTDQIRIDEGLM----PQWSPK 349
>gi|87199039|ref|YP_496296.1| translocation protein TolB [Novosphingobium aromaticivorans DSM
12444]
gi|119371032|sp|Q2G9L1.1|TOLB2_NOVAD RecName: Full=Protein TolB 2; Flags: Precursor
gi|87134720|gb|ABD25462.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444]
Length = 461
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 115/259 (44%), Gaps = 42/259 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGG 477
P +SP +I ++ + P +Y+ N ++ V F+ W P + ++Y+
Sbjct: 235 PRYSPDYSQIVYLSYLNGAPRIYIYNIGTGQQKLVTSSTNPTFAPRWSPDGKWILYS--- 291
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + DI ++V+ A RLT + + S SPDG IVF S R+G + L
Sbjct: 292 ---MSVAGNTDIYRVSVNG----GASTRLTDSPGIDVGGSYSPDGSRIVFESDRSGSQQL 344
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G R++ WSP G+ IAF G+F + + P+G
Sbjct: 345 YVMNADGSN---QKRISFFGGRAATPEWSPRGDQIAFTHL-----GGNFRIAVTDPSGGN 396
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+R L S + P +SP+G+ + F G I+++ L G +
Sbjct: 397 MRFLTDS---WQDEAPTWSPNGRIVQFFRTERGSGKT------------GIWQVDLTGRN 441
Query: 658 LKRLTQNSFEDGT-PAWGP 675
++L N+ DG+ PAWGP
Sbjct: 442 ERKL--NTPVDGSDPAWGP 458
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG A R TNG+ A P SPD IV+ S G +YI + G G
Sbjct: 212 LAIMDSDG--ANHRFITNGQATALTPRYSPDYSQIVYLSYLNGAPRIYIYNI----GTGQ 265
Query: 551 HRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
+L + T WSPDG+WI ++ +G+ ++Y + NG +L S G
Sbjct: 266 QKLVTSSTNPTFAPRWSPDGKWILYSMSV----AGNTDIYRVSVNGGASTRLTDS--PGI 319
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+SPDG IVF SD G +++ + DGS+ KR++
Sbjct: 320 DVGGSYSPDGSRIVFESDRSGSQ--------------QLYVMNADGSNQKRISFFGGRAA 365
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 366 TPEWSPR 372
>gi|403057721|ref|YP_006645938.1| tol protein B [Pectobacterium carotovorum subsp. carotovorum PCC21]
gi|402805047|gb|AFR02685.1| tol protein B [Pectobacterium carotovorum subsp. carotovorum PCC21]
Length = 430
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 24/174 (13%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
A+R++ + ++N PS SPDG + F +++G NLY+M+ G+ + ++T+G ++T
Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQ---ISQVTDGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
W PD + +A+ SD+ +G ++Y ++ NG ++L GS + S DGK
Sbjct: 292 EPTWFPDSQTLAYTSDQ----AGRPQVYKVNANGGAPQRLTWEGSQNQDAD--VSADGKF 345
Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+V S GG I K+ L ++ LT ++F D TP+ P
Sbjct: 346 LVTVSSNGGAQ--------------HISKLDLVTGAVQVLT-DTFLDETPSIAP 384
>gi|153824250|ref|ZP_01976917.1| conserved hypothetical protein, partial [Vibrio cholerae B33]
gi|126518227|gb|EAZ75452.1| conserved hypothetical protein [Vibrio cholerae B33]
Length = 374
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + RL K P+ SPDG+ + + S + G +Y+M+ G+
Sbjct: 179 LRIADYDGYN--ERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGK---R 233
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+LT P + +SPDG+ +A + +G+ ++Y + R+L + ++GR+
Sbjct: 234 EKLTSFPRHNGAPRFSPDGKTLALVLSK----TGNLQVYTMD---LATRRLTEV-TSGRS 285
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG +P +I+++ L G + KRLT
Sbjct: 286 NNTEPFWHPDGKSLIFTSDRGG------------KP--QIYQVNLSGGETKRLT 325
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N+ L+ K PL P++SP G +A+V F + + ++Y
Sbjct: 185 DGYNERLVLRSKQPLMS----------PAWSPDGQTLAYVSFQ---------NGQAEIYM 225
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS---AVRRLT--TNGK 511
N +S + + + +G P F+ + + ++ ++ + A RRLT T+G+
Sbjct: 226 MNIYSGKREKL-TSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGR 284
Query: 512 -NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
NN P PDGK ++F S R G +Y ++ GGE RLT + +PDG+
Sbjct: 285 SNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGE---TKRLTWQGSQNLGGQITPDGK 341
Query: 571 WIAFASDRDN 580
++ + D+
Sbjct: 342 FLVMVNRSDS 351
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD + Y ++G ++ + NI S + S R +G+ P FSP G
Sbjct: 200 MSPAWSPDGQTLAYVSF------QNGQAEIYMMNIYSGKREKLTSFPRHNGA-PRFSPDG 252
Query: 431 DRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS---GGPEFA 481
+A V + + V D + RR + S W P +++++TS G P+
Sbjct: 253 KTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQ-- 310
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
I +N+ +RLT G N ++PDGK++V + NL D
Sbjct: 311 -------IYQVNLSG----GETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQD 359
Query: 542 AEGG 545
E G
Sbjct: 360 LETG 363
>gi|374621795|ref|ZP_09694325.1| translocation protein TolB [Ectothiorhodospira sp. PHS-1]
gi|373940926|gb|EHQ51471.1| translocation protein TolB [Ectothiorhodospira sp. PHS-1]
Length = 430
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 44/260 (16%)
Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNR-RQVYFKNAFST-VWDPVREAVVYTSGG 477
P++SP G RIA+V F V+V N DG +R R F+ S W P + T
Sbjct: 204 PAWSPDGRRIAYVSFENGRSEVFVQNVDGGDRTRLAAFEGINSAPSWSPDGRRLALT--- 260
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S D+ +N+ D +V R+T + + P+ PDG+ +VF S R G L
Sbjct: 261 ---LSRDGAPDVYVMNLAD----RSVSRVTQSRSIDTEPAWMPDGRSLVFTSDRAGQPQL 313
Query: 538 YIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y + GG+ RL+ EG ++ + SPDG +A + G F + ++
Sbjct: 314 YEVPVTGGQ---PRRLSFEGRYNGG-ASISPDGRRVAMV----HGVGGGFRIAILDRQTR 365
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
R L + GRA+ P F+P+G I++ + G G + + DG
Sbjct: 366 QFRVL----TDGRADEAPSFAPNGSMIIYATSERG--------------RGVLAAVSADG 407
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+RL E PAW P
Sbjct: 408 RVHQRLVLQEGEVREPAWSP 427
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 110/256 (42%), Gaps = 41/256 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDG--SFPSFSPKG 430
L+P SPD R+ Y E+G +++ ++N+ L F+G S PS+SP G
Sbjct: 202 LSPAWSPDGRRIAYVSF------ENGRSEVFVQNVDGG-DRTRLAAFEGINSAPSWSPDG 254
Query: 431 DRIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
R+A P VYV+N + +V + T W P ++V+TS G P+
Sbjct: 255 RRLALTLSRDGAPDVYVMNLADRSVSRVTQSRSIDTEPAWMPDGRSLVFTSDRAGQPQL- 313
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
EV + RRL+ G+ N S+SPDG+ + G + I+D
Sbjct: 314 ---YEVPVTG---------GQPRRLSFEGRYNGGASISPDGRRVAMVHGVGGGFRIAILD 361
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
+ + LT+G +D +++P+G I +A+ G + + +G ++L
Sbjct: 362 RQTRQ---FRVLTDG-RADEAPSFAPNGSMIIYATSERGRGV----LAAVSADGRVHQRL 413
Query: 602 IQSGSAGRANHPYFSP 617
+ G P +SP
Sbjct: 414 VL--QEGEVREPAWSP 427
>gi|116626707|ref|YP_828863.1| serine/threonine protein kinase [Candidatus Solibacter usitatus
Ellin6076]
gi|116229869|gb|ABJ88578.1| serine/threonine protein kinase [Candidatus Solibacter usitatus
Ellin6076]
Length = 955
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
++ G + A S+ I +G + ++TT+G P+ SPDGKWI + S
Sbjct: 426 FSPDGKQIAFSSNRNGWFEIYTKPSEGPGSDHQVTTDGNQAVEPAWSPDGKWIAYHS--V 483
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-------DNPGSGS 585
L+++ + GG + + P WSPDG +AF S D PG G
Sbjct: 484 AKHGLWMVPSGGGTPHRISEFGSAP------AWSPDGRTLAFRSYETSSLALSDWPGDGE 537
Query: 586 FEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSPDGKSIVFTS 626
++++ +GT L++L Q G+ P +SPDGK ++F S
Sbjct: 538 STIWIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIFAS 579
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK I F S R G+ +Y +EG H++T WSPDG+WIA+ S
Sbjct: 425 SFSPDGKQIAFSSNRNGWFEIYTKPSEGPGSD--HQVTTDGNQAVEPAWSPDGKWIAYHS 482
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
++++ G ++ + GSA P +SPDG+++ F S Y S
Sbjct: 483 ------VAKHGLWMVPSGGGTPHRISEFGSA-----PAWSPDGRTLAFRS-YETSSLALS 530
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT---PAWGP 675
P + I+ + DG++L++LTQ G P+W P
Sbjct: 531 DWPGDGE--STIWIVAADGTNLQQLTQPRNPPGQHADPSWSP 570
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 116/495 (23%), Positives = 181/495 (36%), Gaps = 122/495 (24%)
Query: 192 RTSWAAVYSTELKT-GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250
R W +Y+ + G ++T G PA SP GK+ A S G
Sbjct: 439 RNGWFEIYTKPSEGPGSDHQVTTDGNQAVEPAWSPDGKWIAYHSVAKHG----------- 487
Query: 251 IYIFLTRDGTQRVKIVENGGWPCWV-DESTLFFHRKSEEDDWISVYKVILPQTG-----L 304
+++ + GT +I E G P W D TL F +S E +++ P G +
Sbjct: 488 LWMVPSGGGTPH-RISEFGSAPAWSPDGRTLAF--RSYETSSLALSD--WPGDGESTIWI 542
Query: 305 VSTESVSIQRVT----PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI 360
V+ + ++Q++T PPG HA P+ SP + I + T +R VK+ +
Sbjct: 543 VAADGTNLQQLTQPRNPPGQHA-DPSWSPDGKRLIFASLNIVTMGFRGALFTVDVKSGDV 601
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG---------STREDGNNQLLLENIKSPL 411
+ NP + D V Y R S DG N + L K +
Sbjct: 602 KPVP-AGGIWGAANPVFALDGKGV-YFAGRPNIAGFNGVYYSAFSDGANPVELYRTKQAV 659
Query: 412 P-DISLFRFDGS-----------------------------------FPSFSPKGDRIAF 435
P ISL R DG P+FSP G R+ +
Sbjct: 660 PARISLSR-DGKSLAFTRMVNASQIWLTDTSGKESKALYEDLVVRARIPNFSPDGSRLNY 718
Query: 436 V-----EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV---YTSGGPEF----- 480
GV+++N+DGSN +V N W A+V + SG F
Sbjct: 719 QVQSDDATLGVWLMNADGSNPTRVAPDLGNTNGASWASNGNALVCSFFGSGKLRFIWISL 778
Query: 481 ------ASESSEVDIISINV--DDVDGV----------------SAVRRLTTNGKNNAFP 516
E D++ ++ D+ + V R+LT + N FP
Sbjct: 779 ADGSRRVMEEQTRDMLRSHLTPDEKEFVYDFGSPRNIWKRPVAGGPARQLTFGRQRNWFP 838
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+S DG WI ++ T + ++D GG+ LT GP +++ D IA+A
Sbjct: 839 ELSWDGNWIAYQVTEGDETQIAVIDRNGGQ---QRLLTSGPGKRFAHSFASDNRRIAYAG 895
Query: 577 DRDNPGSGSFEMYLI 591
+ G++ +Y I
Sbjct: 896 FEN----GAWNLYWI 906
>gi|430745170|ref|YP_007204299.1| hypothetical protein Sinac_4414 [Singulisphaera acidiphila DSM
18658]
gi|430016890|gb|AGA28604.1| hypothetical protein Sinac_4414 [Singulisphaera acidiphila DSM
18658]
Length = 941
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 424 PSFSPKGDRIAFVEFP-GVYVVNSDGS---NRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P +SP G ++AF + + V ++ G N Q F S W P V + +
Sbjct: 685 PVWSPDGRQLAFADAKTDIVVTDASGQYPRNLTQKAFPFVKSPTWSPDGRQVAFAA---- 740
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
S + S++V DG S++R+L + N A P+ SPDG I+F S R +
Sbjct: 741 ----SPDNTAWSLHVVGNDG-SSLRQLANDAANLAMPAWSPDGTRILFVSVRQDKPGVVD 795
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGL 598
+ G +G +HR+ E WSPDG+ IAF +D D +G M L+ N G
Sbjct: 796 LSVVGPDGKKVHRVREDVPFIAAPAWSPDGQQIAF-TDWDTTHAG---MRLVVANFDGGA 851
Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFT 625
++ I G P +SPDG+SI F
Sbjct: 852 QQTI--AEDGLNVFPVWSPDGRSIAFV 876
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR----LTEGPWSDTMCNWSPD 568
+A P SPDG+ + F +T ++ + DA G L + + P WSPD
Sbjct: 682 SASPVWSPDGRQLAFADAKT---DIVVTDASGQYPRNLTQKAFPFVKSP------TWSPD 732
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS-- 626
G +AFA+ DN ++ ++++ +G+ LR+L + A P +SPDG I+F S
Sbjct: 733 GRQVAFAASPDNT---AWSLHVVGNDGSSLRQL--ANDAANLAMPAWSPDGTRILFVSVR 787
Query: 627 -DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
D G+ + P DG + R+ ++ PAW P
Sbjct: 788 QDKPGVVDLSVVGP--------------DGKKVHRVREDVPFIAAPAWSP---------- 823
Query: 686 VKNEQCAFED 695
+Q AF D
Sbjct: 824 -DGQQIAFTD 832
>gi|71083302|ref|YP_266021.1| translocation protein TolB [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762268|ref|ZP_01264233.1| translocation protein TolB precursor [Candidatus Pelagibacter
ubique HTCC1002]
gi|118574591|sp|Q4FN21.1|TOLB_PELUB RecName: Full=Protein TolB; Flags: Precursor
gi|71062415|gb|AAZ21418.1| tolB protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91718070|gb|EAS84720.1| translocation protein TolB precursor [Candidatus Pelagibacter
ubique HTCC1002]
Length = 446
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 26/207 (12%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ + P VY+++ + + V + F+ + P + ++ +
Sbjct: 213 PRFSPTNQMVTYLSYFRNLPRVYLLDIETGMQEVVGDFPGMTFAPRFSPDGKKIIMS--- 269
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
FA + + DI ++++++ V R+T + + PS SPDGK I F S R+GY+ +
Sbjct: 270 --FAKDGNS-DIYTMDLEN----RIVERITNHPSIDTSPSYSPDGKKITFNSDRSGYQQI 322
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+MD+ G + R++ G WSP G+ IAF G F + ++ +GTG
Sbjct: 323 YVMDSNGK---NVKRISFGNGLYGTPVWSPRGDLIAFTKLH----KGKFYIGVMRTDGTG 375
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624
R L ++ P +SP+G+ ++F
Sbjct: 376 ERLLTENFY---QEAPSWSPNGRVLIF 399
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 24/188 (12%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I + + D DG + + LT + P SP + + + S +Y++D E G
Sbjct: 187 IKKLAIMDQDGFNN-KYLTLGNELVLTPRFSPTNQMVTYLSYFRNLPRVYLLDIETGMQ- 244
Query: 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
+ + P +SPDG+ I + +D G+ ++Y + + ++ S
Sbjct: 245 --EVVGDFPGMTFAPRFSPDGKKIIMSFAKD----GNSDIYTMDLENRIVERITNHPSID 298
Query: 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
+ P +SPDGK I F SD G Y +I+ + +G ++KR++ +
Sbjct: 299 TS--PSYSPDGKKITFNSDRSG--------------YQQIYVMDSNGKNVKRISFGNGLY 342
Query: 669 GTPAWGPR 676
GTP W PR
Sbjct: 343 GTPVWSPR 350
>gi|402703806|ref|ZP_10851785.1| translocation protein TolB [Rickettsia helvetica C9P9]
Length = 444
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 43/275 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFSGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + P +IF I L G + + +
Sbjct: 402 GWPSRAKAPGKN--------KIFAIDLTGHNEREI 428
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRAL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + ++ +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKESVVGDFSGISFAP---RFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|381203014|ref|ZP_09910123.1| putative amidohydrolase [Sphingobium yanoikuyae XLDN2-5]
Length = 984
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 21/212 (9%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFAS 482
S SP G +A ++++ + G +++ YF +A VW P + Y F+
Sbjct: 49 SVSPDGKWLAVDLQGSLWIIPTSGGKAKRITDYFNDARQPVWSPDGSRLAY------FSY 102
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D+ +I D D +R+LT ++ P+ SPDG+ I F S R+G +++ +D
Sbjct: 103 RDGNYDLWTIKPDGSD----MRKLTEGAYDDREPAWSPDGRTIAFSSDRSGNYDIWTLDI 158
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + +++ D M +WSPDG IA+ S D + + L + L+++
Sbjct: 159 ASG---AMKQVSSNGREDRMPSWSPDGARIAY-SGTDGAKTALYVTALADGQESLLKQV- 213
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
G+ + P F P G+ + D G E
Sbjct: 214 ----QGKIDAPSFGPGGELVYVVQDAQGSRLE 241
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+W+A D GS +++I +G +++ + R P +SPDG + +
Sbjct: 51 SPDGKWLAV----DLQGS----LWIIPTSGGKAKRITDYFNDAR--QPVWSPDGSRLAYF 100
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S G Y +++ IK DGSD+++LT+ +++D PAW P
Sbjct: 101 SYRDG----------NY----DLWTIKPDGSDMRKLTEGAYDDREPAWSP 136
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS----GG 477
P+ SP G RIAF +YV++S G + A T W P +++VY+S G
Sbjct: 318 PTLSPDGSRIAFAALGDLYVMSSKGGVPENLTKDGALDTDPAWSPDGQSLVYSSDKGGGL 377
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ + + D+D + +G A+ V DG+W G L
Sbjct: 378 PQLWIRDMKTG-KDRRLTDIDTQPLGAAWSHDGTRIAYIDV--DGRW--------GVAGL 426
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---GSFEMYLIHPN 594
++D G+ + RL +WSPDG+++A S G+ ++Y++ +
Sbjct: 427 CVVDVATGK---ITRLQGSLGQPGSPSWSPDGKYVAIPLSYKYSNSFREGTNQVYMVPTD 483
Query: 595 GTG-----LRKLIQSGSAGRANHPYFSPDGKSIV 623
G G L + S P +SPDG +
Sbjct: 484 GVGKAFWHLPEPNMSMDTRAGGGPAWSPDGTKMA 517
>gi|423711705|ref|ZP_17686010.1| protein tolB [Bartonella washoensis Sb944nv]
gi|395413372|gb|EJF79842.1| protein tolB [Bartonella washoensis Sb944nv]
Length = 441
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 28/161 (17%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK IVF S R+G +Y M+A+G + L R++ S + WSP G++IAF
Sbjct: 302 SYSPDGKQIVFSSDRSGKPQIYTMNADGSD---LRRISSNEGSYSTPIWSPRGDYIAFTK 358
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
+ G F + ++ P+GTG R L + G N P ++P+G+ ++F +P
Sbjct: 359 QSE----GQFSIGVMRPDGTGERIL----TTGFHNEGPTWAPNGRVLMF------FRKDP 404
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKR-LTQNSFEDGTPAWGP 675
P +I+ I + G + ++ LT N D PAW P
Sbjct: 405 GMGP-------KIYTIDITGRNERQLLTPNDASD--PAWSP 436
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+SPDGK IVF+SD G +P +I+ + DGSDL+R++ N TP W
Sbjct: 303 YSPDGKQIVFSSDRSG------------KP--QIYTMNADGSDLRRISSNEGSYSTPIWS 348
Query: 675 PR 676
PR
Sbjct: 349 PR 350
>gi|383483749|ref|YP_005392662.1| translocation protein TolB [Rickettsia parkeri str. Portsmouth]
gi|378936103|gb|AFC74603.1| translocation protein TolB [Rickettsia parkeri str. Portsmouth]
Length = 444
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKILYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I++ S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKILYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|153820467|ref|ZP_01973134.1| tolB protein, partial [Vibrio cholerae NCTC 8457]
gi|126508988|gb|EAZ71582.1| tolB protein [Vibrio cholerae NCTC 8457]
Length = 382
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + RL K P+ SPDG+ + + S + G +Y+M+ G+
Sbjct: 202 LRIADYDGYN--ERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGK---R 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+LT P + +SPDG+ +A + +G+ ++Y + R+L + ++GR+
Sbjct: 257 EKLTSFPRHNGAPRFSPDGKTLALVLSK----TGNLQVYTMD---LATRRLTEV-TSGRS 308
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG +P +I+++ L G + KRLT
Sbjct: 309 NNTEPFWHPDGKSLIFTSDRGG------------KP--QIYQVNLSGGETKRLT 348
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N+ L+ K PL P++SP G +A+V F + + ++Y
Sbjct: 208 DGYNERLVLRSKQPLMS----------PAWSPDGQTLAYVSFQ---------NGQAEIYM 248
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS---AVRRLT--TNGK 511
N +S + + + +G P F+ + + ++ ++ + A RRLT T+G+
Sbjct: 249 MNIYSGKREKL-TSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGR 307
Query: 512 -NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
NN P PDGK ++F S R G +Y ++ GGE RLT + +PDG+
Sbjct: 308 SNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGE---TKRLTWQGSQNLGGQITPDGK 364
Query: 571 WIAFASDRDN 580
++ + D+
Sbjct: 365 FLVMVNRSDS 374
>gi|254468571|ref|ZP_05081977.1| Tol-Pal system beta propeller repeat protein TolB [beta
proteobacterium KB13]
gi|207087381|gb|EDZ64664.1| Tol-Pal system beta propeller repeat protein TolB [beta
proteobacterium KB13]
Length = 425
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 443 VVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V + DG N++ + N ST W P E + Y S F + + + ++
Sbjct: 177 VSDMDGFNKKAIVTSNQPIISTRWSPDGEKIAYVS----FEKKKPVIYVQNLK------- 225
Query: 501 SAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+ R+L N K NN+ P+ SPD K + T + +Y+M+A+G + RL
Sbjct: 226 NGERQLVANFKGNNSAPAWSPDNKQLAIVLTYNNFSQIYVMNADGK---NIKRLMRSRSI 282
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
DT W+PDG+ I F SDR G ++Y I ++++ G + P SPDG
Sbjct: 283 DTEPVWAPDGKSIYFVSDR----GGGPQIYKIDLKTEQIKRVTFEGKYNVS--PQLSPDG 336
Query: 620 KSIVFTSDYGG 630
K + F ++ G
Sbjct: 337 KLLTFITNDNG 347
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 32/188 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVS----PDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+NV D+DG + +T+N P +S PDG+ I + S +Y+ + + GE
Sbjct: 175 LNVSDMDGFNKKAIVTSNQ-----PIISTRWSPDGEKIAYVSFEKKKPVIYVQNLKNGER 229
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ +++ WSPD + +A +N ++Y+++ +G +++L++S S
Sbjct: 230 ---QLVANFKGNNSAPAWSPDNKQLAIVLTYNNFS----QIYVMNADGKNIKRLMRSRSI 282
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
P ++PDGKSI F SD GG P +I+KI L +KR+T
Sbjct: 283 D--TEPVWAPDGKSIYFVSDRGG-------GP-------QIYKIDLKTEQIKRVTFEGKY 326
Query: 668 DGTPAWGP 675
+ +P P
Sbjct: 327 NVSPQLSP 334
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFV 436
SPD ++ Y + E + ++N+K+ ++ F+ + S P++SP ++A V
Sbjct: 201 SPDGEKIAY------VSFEKKKPVIYVQNLKNGERQLVANFKGNNSAPAWSPDNKQLAIV 254
Query: 437 ----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFASESSEV 487
F +YV+N+DG N +++ + T VW P +++ + S GGP+ ++
Sbjct: 255 LTYNNFSQIYVMNADGKNIKRLMRSRSIDTEPVWAPDGKSIYFVSDRGGGPQIY----KI 310
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D+ ++R+T GK N P +SPDGK + F + G + + + +
Sbjct: 311 DL---------KTEQIKRVTFEGKYNVSPQLSPDGKLLTFITNDNGAFKVGVQNLISNQ- 360
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
+ +LT+G +D +SP+G + +
Sbjct: 361 --VIKLTQGR-NDEAPVFSPNGHMVLYT 385
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 30/208 (14%)
Query: 426 FSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FK-NAFSTVWDPVREAVVYTSGGPE 479
+SP G++IA+V F P +YV N R+ V FK N + W P + +
Sbjct: 200 WSPDGEKIAYVSFEKKKPVIYVQNLKNGERQLVANFKGNNSAPAWSPDNKQLAIVLTYNN 259
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
F+ I V + DG ++RL + + P +PDGK I F S R G +Y
Sbjct: 260 FS---------QIYVMNADG-KNIKRLMRSRSIDTEPVWAPDGKSIYFVSDRGGGPQIYK 309
Query: 540 MDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
+D + + + R+T EG + + SPDG+ + F ++ DN G+F++ + + +
Sbjct: 310 IDLKTEQ---IKRVTFEGKY-NVSPQLSPDGKLLTFITN-DN---GAFKVGVQNLISNQV 361
Query: 599 RKLIQSGSAGRANH-PYFSPDGKSIVFT 625
KL Q GR + P FSP+G +++T
Sbjct: 362 IKLTQ----GRNDEAPVFSPNGHMVLYT 385
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGSGSFEMYLIHPN 594
N Y ++ +G+ + WSPDGE IA+ S ++ P + +
Sbjct: 171 NKYQLNVSDMDGFNKKAIVTSNQPIISTRWSPDGEKIAYVSFEKKKP------VIYVQNL 224
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGK--SIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
G R+L+ + G + P +SPD K +IV T Y + +I+ +
Sbjct: 225 KNGERQLV-ANFKGNNSAPAWSPDNKQLAIVLT----------------YNNFSQIYVMN 267
Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
DG ++KRL ++ D P W P
Sbjct: 268 ADGKNIKRLMRSRSIDTEPVWAP 290
>gi|269837252|ref|YP_003319480.1| WD40 domain-containing protein beta Propeller [Sphaerobacter
thermophilus DSM 20745]
gi|269786515|gb|ACZ38658.1| WD40 domain protein beta Propeller [Sphaerobacter thermophilus DSM
20745]
Length = 332
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 51/265 (19%)
Query: 420 DGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN----------------A 459
D S+P +S G R FV F +Y+ N+DGS Q+ F A
Sbjct: 71 DASYPRWSGDGSRFVFVRTGDAFSDLYIANADGSGMEQLTFYQPPIQPGTEAYIREAMWA 130
Query: 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519
VW +A+ + S ++ + + + + ++ T NG+N P S
Sbjct: 131 LDPVWSRAGDAIAFVS------DRNTLKNFLWLMPAPGENPYQIQASTYNGENVEHPDFS 184
Query: 520 PDGKWIVFRSTRTG------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
PDG+ IVF TG + L+++D + + L EG + WSPDG WIA
Sbjct: 185 PDGQRIVFAQRTTGENDLQRWTQLWVVDLNTEQLFPLVETNEGAYDPA---WSPDGRWIA 241
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG--- 630
+ +++++ G +L G+ P +SPDG I F GG
Sbjct: 242 YTGRT----GAENDIWVVPAEGGTPIRLTNFGN---VRAPTWSPDGSWIAFLQTDGGSFK 294
Query: 631 ISAEPIS-----TPHQYQPYGEIFK 650
A P S TP +P E+FK
Sbjct: 295 AVAAPFSVGEDGTPRLGEPQ-ELFK 318
>gi|34580657|ref|ZP_00142137.1| tolB protein precursor [Rickettsia sibirica 246]
gi|28262042|gb|EAA25546.1| tolB protein precursor [Rickettsia sibirica 246]
Length = 444
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGSGSYATPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ S TP+W PR
Sbjct: 323 DVQRISFGSGSYATPSWSPR 342
>gi|294085866|ref|YP_003552626.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665441|gb|ADE40542.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322]
Length = 431
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 122/266 (45%), Gaps = 50/266 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVN--SDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
P FSP + +A++ + P VY+++ + + R + F+ + P + ++ +
Sbjct: 199 PRFSPTANEVAYLNYFNEEPNVYLLDVFTARTERLGSFPGMTFAPRFGPDGDKLIMS--- 255
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
++ DI +++ ++ +LT + + PS SPDGK IVF S R G + L
Sbjct: 256 ---LAKDGLTDIYEMDMR----TQSITQLTKSASIDTSPSYSPDGKRIVFNSDRGGSQQL 308
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+G + R++ G WSP G+ +AF G+F + +++ +GTG
Sbjct: 309 YVMNADGSN---VKRISYGDGRYATPVWSPRGDIVAFTKMT----GGTFYIGVMNIDGTG 361
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE--------IF 649
R L Q P ++P+G+ +++ + QP+ + ++
Sbjct: 362 ERLLAQ---GFLVEGPTWAPNGRVLMY---------------FKQQPFKDDGSGGKTALY 403
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
++ + G + +R+ S + PAW P
Sbjct: 404 RVDITGFNERRIITPS-DASDPAWSP 428
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 37/239 (15%)
Query: 445 NSDGSNRRQVYFKNA------FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
NSD + RQ+ K A F+ +VY + E S+S V ++I D D
Sbjct: 128 NSDPAGLRQLSHKIADYVYEEFTGDTGYFDTQIVYVA---ESGSQSQRVKRLAIM--DQD 182
Query: 499 GVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
G + R TNG + P SP + + + N+Y++D RL P
Sbjct: 183 GHN--HRYLTNGLDLVLTPRFSPTANEVAYLNYFNEEPNVYLLDVFTAR---TERLGSFP 237
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ PDG+ + + +D G ++Y + + +L +S S + P +SP
Sbjct: 238 GMTFAPRFGPDGDKLIMSLAKD----GLTDIYEMDMRTQSITQLTKSASIDTS--PSYSP 291
Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
DGK IVF SD GG +++ + DGS++KR++ TP W PR
Sbjct: 292 DGKRIVFNSDRGGSQ--------------QLYVMNADGSNVKRISYGDGRYATPVWSPR 336
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P P +K I + I D+ +LT+ S T +P
Sbjct: 237 PGM-TFAPRFGPDGDKLIMSLAK---DGLTDIYEMDMRTQSITQLTKSASIDT---SPSY 289
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSFPSFSPKGDRIAFV 436
SPD R+ ++ RGGS QL + N S + IS + P +SP+GD +AF
Sbjct: 290 SPDGKRIVFNSDRGGS------QQLYVMNADGSNVKRISYGDGRYATPVWSPRGDIVAFT 343
Query: 437 EFPG----VYVVNSDGSNRR 452
+ G + V+N DG+ R
Sbjct: 344 KMTGGTFYIGVMNIDGTGER 363
>gi|330815668|ref|YP_004359373.1| Putative TolB protein [Burkholderia gladioli BSR3]
gi|327368061|gb|AEA59417.1| Putative TolB protein [Burkholderia gladioli BSR3]
Length = 433
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 155/385 (40%), Gaps = 89/385 (23%)
Query: 330 GNNKFIAVATRRPTSSYRHIE--LFDLVKNKFI---ELT-----RFVSPKTHHLNPFISP 379
G N +A R S ++ LFD +K + + LT + H + FI
Sbjct: 96 GANALVAGTVNRDASGQVKVDFMLFDTLKQQSLGGLSLTAGGDAESMRKTGHKIADFIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
S+R+ Y GG R D + + + + S P IS P++SP
Sbjct: 156 KLMGVRGVFSTRLSYVTRSGGKYRLLISDSDGENAVPALTSSEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ + +RRLT + + P SPDG+WI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSATG----TGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
A+G R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AQGESAGSAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAGRANH------PYFSPDGKSIVFTSDYGG---ISAEPI--STPHQYQPYGEIFK 650
+Q+G+A + P F+ +G+ I++ + G ++A P S+P Q P
Sbjct: 364 LQTGAANAVTNTTHDESPSFAANGQYILYATQANGRSVLAAVPSDGSSPPQILP------ 417
Query: 651 IKLDGSDLKRLTQNSFEDGTPAWGP 675
+ SF + P+WGP
Sbjct: 418 ----------VQGGSFRE--PSWGP 430
>gi|339253846|ref|XP_003372146.1| conserved hypothetical protein [Trichinella spiralis]
gi|316967493|gb|EFV51909.1| conserved hypothetical protein [Trichinella spiralis]
Length = 382
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
N+ D LT + NA +VSPDGK IVF STR G +L++M G E +
Sbjct: 145 FNILLTDSTGKTHYLTDDSFYNAEGAVSPDGKSIVFTSTRGGDLDLWLMRLNGTEVVNIT 204
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG----------------SFEMYLIHPNG 595
+LT+ D +SP G+ I + + E++ ++ +G
Sbjct: 205 QLTDITGYDGGAFFSPLGDKIVYRAYHPKTAEEITNYFQLLNLSITKPLHMEIFTMNADG 264
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ ++L G A A PYF PDG I+F+S++ H +F I DG
Sbjct: 265 SDQKQLTNFGYASWA--PYFYPDGSKIIFSSNH-----------HGNHSVFNLFLIDQDG 311
Query: 656 SDLKRLTQNSFEDGTPAW 673
++L+++T N D P +
Sbjct: 312 NNLEQITTNPGLDMFPMF 329
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
N+ + D+ G H LT+ + + SPDG+ I F S R G +++L+ NG
Sbjct: 146 NILLTDSTGKT----HYLTDDSFYNAEGAVSPDGKSIVFTSTR----GGDLDLWLMRLNG 197
Query: 596 TGLRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY------QP-YGE 647
T + + Q + G +FSP G IV+ + Y +AE I+ Q +P + E
Sbjct: 198 TEVVNITQLTDITGYDGGAFFSPLGDKIVYRA-YHPKTAEEITNYFQLLNLSITKPLHME 256
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
IF + DGSD K+LT G +W P F
Sbjct: 257 IFTMNADGSDQKQLTNF----GYASWAPYF 282
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 42/205 (20%)
Query: 411 LPDISLFRFDGSFPSFSPKGDRIAF------------VEFPGVYVVNSDGSNRRQVYFKN 458
L D S + +G+ SP G I F + G VVN Y
Sbjct: 159 LTDDSFYNAEGAV---SPDGKSIVFTSTRGGDLDLWLMRLNGTEVVNITQLTDITGYDGG 215
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESS--------------EVDIISINVDDVDGVSAVR 504
AF + P+ + +VY + P+ A E + ++I ++N D D +
Sbjct: 216 AF---FSPLGDKIVYRAYHPKTAEEITNYFQLLNLSITKPLHMEIFTMNADGSDQ----K 268
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTEGPWSDT 561
+LT G + P PDG I+F S G NL+++D +G L ++T P D
Sbjct: 269 QLTNFGYASWAPYFYPDGSKIIFSSNHHGNHSVFNLFLIDQDGNN---LEQITTNPGLDM 325
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSF 586
+S D + + F S+R+ G F
Sbjct: 326 FPMFSYDKKKLIFVSNRNGNGFNVF 350
>gi|409438032|ref|ZP_11265126.1| Protein tolB [Rhizobium mesoamericanum STM3625]
gi|408750220|emb|CCM76290.1| Protein tolB [Rhizobium mesoamericanum STM3625]
Length = 436
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 25/161 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG IVF S R G++ +Y+M+A+G G R++ G + + WSP G+ IAF
Sbjct: 297 PSYSPDGNRIVFESDRGGHQQIYVMNADGS---GQTRISFGDGNYSTPVWSPRGDLIAFT 353
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + ++ P+G+G R L + G N P ++P+G+ I+F G
Sbjct: 354 KQ----SGGKFSIGVMKPDGSGERIL----TTGFHNEGPTWAPNGRVIMFFRQAAGAGGP 405
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I L G + ++L + PAW P
Sbjct: 406 ------------QLYSIDLTGYN-EQLIKTPTYASDPAWSP 433
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG + R+ TNG + P SP+ + + + S +Y++ E G+ +
Sbjct: 186 LAIMDQDGYNV--RMLTNGSDLVLTPRFSPNRQEVTYMSFANQQPRVYLLQLETGQREVV 243
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
P +SPDG+ + + ++ G+ +Y + + + +A
Sbjct: 244 GNF---PGMTFSPRFSPDGQKVVMSLQQE----GNANIYTM--DLRSRTTTRLTSTAAID 294
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG IVF SD GG HQ +I+ + DGS R+ SF DG
Sbjct: 295 TSPSYSPDGNRIVFESDRGG---------HQ-----QIYVMNADGSGQTRI---SFGDGN 337
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 338 YSTPVWSPR 346
>gi|407786153|ref|ZP_11133299.1| periplasmic protein of the Tol biopolymer transport system protein
[Celeribacter baekdonensis B30]
gi|407201885|gb|EKE71881.1| periplasmic protein of the Tol biopolymer transport system protein
[Celeribacter baekdonensis B30]
Length = 284
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 42/205 (20%)
Query: 464 WDPVREAVVYTSGGPEF-----ASESSEVDI-ISINVDDVDGVS---------------- 501
W P A++ GG F A E E+D + IN+++ G+S
Sbjct: 41 WTPDGSALIVNGGGSLFWVDLEAPELLEIDTGLCINLNNDHGISPDGATLYFSDHTYGRG 100
Query: 502 -AVRRLTTNGKNNA----------FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ R + +G+ + F +SPDG+WI + + R G +Y+ +G G
Sbjct: 101 ALIWRQSLDGEADPEQVTEKRPSWFHGMSPDGQWICYTAVREGLFGIYVA---ANDGSGE 157
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
H + EG ++S DG WI F SDR +G+ E++ + P+G+GL ++ Q
Sbjct: 158 HCVIEGGHHYDGPDFSADGAWIWFNSDR----TGASELWRVRPDGSGLERMTQDAMVNWF 213
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEP 635
HP +P+G ++V+ + G P
Sbjct: 214 PHP--APEGDAVVYLAYPEGTVGHP 236
>gi|398355018|ref|YP_006400482.1| protein TolB [Sinorhizobium fredii USDA 257]
gi|390130344|gb|AFL53725.1| protein TolB [Sinorhizobium fredii USDA 257]
Length = 456
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG +VF S R G + LY+M G +G G R++ G S + WSP G+ IAF
Sbjct: 317 PSYSPDGSRVVFESDRGGKQQLYVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFT 373
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAE 634
G F + ++ P+G+G R L + G N P ++P+G+ ++F G
Sbjct: 374 KQ----SGGKFSIGVMKPDGSGERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP 425
Query: 635 PISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I L G + ++L Q PAW P
Sbjct: 426 ------------QLYSIDLTGYN-EQLVQTQGFASDPAWSP 453
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ + D DG +A R LT + P SP+ + I + S +Y++ E G+
Sbjct: 205 QLAIMDQDGFNA-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQ---R 260
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+ P +SPDG+ + + ++ G+ +Y + +L + + +
Sbjct: 261 EVVGNFPGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRLTNTNAIDTS 316
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG- 669
P +SPDG +VF SD GG +++ + DGS R+ SF DG
Sbjct: 317 --PSYSPDGSRVVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGS 357
Query: 670 --TPAWGPR 676
TP W PR
Sbjct: 358 YSTPVWSPR 366
>gi|238650751|ref|YP_002916604.1| translocation protein TolB [Rickettsia peacockii str. Rustic]
gi|259533880|sp|C4K1V5.1|TOLB_RICPU RecName: Full=Protein TolB; Flags: Precursor
gi|238624849|gb|ACR47555.1| translocation protein TolB [Rickettsia peacockii str. Rustic]
Length = 444
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDKNSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|284037589|ref|YP_003387519.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Spirosoma linguale DSM 74]
gi|283816882|gb|ADB38720.1| peptidase S9 prolyl oligopeptidase active site domain protein
[Spirosoma linguale DSM 74]
Length = 660
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 15/117 (12%)
Query: 516 PSVSPDGKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
P +SPDG+W+ + TRT + ++++++ + G + +LT S+ WSPDG
Sbjct: 37 PKISPDGQWVAYTLTRTNWDENSYDTDIWLVNIQTGNRF---QLTNSKKSNNSPAWSPDG 93
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
+W+AF S RD+ ++YLI P+G R + + + A +SP+GK IVFT+
Sbjct: 94 KWLAFLSTRDDKP----QLYLISPSGGEARAISKFETGVTAFR--WSPNGKQIVFTA 144
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + V YT + S + DI +N+ + +LT + K+N P+ SPDGKW+
Sbjct: 41 PDGQWVAYTLTRTNWDENSYDTDIWLVNIQTGNRF----QLTNSKKSNNSPAWSPDGKWL 96
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
F STR LY++ GGE + + G T WSP+G+ I F +
Sbjct: 97 AFLSTRDDKPQLYLISPSGGEARAISKFETGV---TAFRWSPNGKQIVFTA 144
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 41/241 (17%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS-----FPSFSP 428
NP ISPD V Y R + + L NI++ + F+ S P++SP
Sbjct: 36 NPKISPDGQWVAYTLTRTNWDENSYDTDIWLVNIQTG----NRFQLTNSKKSNNSPAWSP 91
Query: 429 KGDRIAFV----EFPGVYVVNSDGSNRRQV-YFKNAFSTV-WDPVREAVVYTSGGP---- 478
G +AF+ + P +Y+++ G R + F+ + W P + +V+T+ P
Sbjct: 92 DGKWLAFLSTRDDKPQLYLISPSGGEARAISKFETGVTAFRWSPNGKQIVFTATVPDAKP 151
Query: 479 --EFASESSEVDIIS-----INVDDVDGV----SAVRRLTTNGKNNAFPS--VSPDGKWI 525
E + S+ +++ +++ +D + A + T GK+ + + VSPDGK I
Sbjct: 152 DKERKEKYSDYEVVRDDYKMVHLYLIDSLFNEKPASAKPLTRGKDFSVGNFVVSPDGKKI 211
Query: 526 VFRSTRT-----GY-KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579
+ + R G+ +LY++ + L +GP D + WSPDG+ IAF + +
Sbjct: 212 AYDAARNPDLINGHTSDLYVLTLGDTISRKIVSL-KGPDQDPV--WSPDGKQIAFVTANE 268
Query: 580 N 580
N
Sbjct: 269 N 269
>gi|221201006|ref|ZP_03574046.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2M]
gi|221206542|ref|ZP_03579555.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2]
gi|221214396|ref|ZP_03587367.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD1]
gi|221165653|gb|EED98128.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD1]
gi|221173851|gb|EEE06285.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2]
gi|221178856|gb|EEE11263.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2M]
Length = 431
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I S+N + +RRLT + + P SPDG WI F S R G +
Sbjct: 258 ---LSLTGNTQIYSVNSNG----GGLRRLTQSSSIDTEPFYSPDGHWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 396
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 565 WSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSP G +A+ S +R P + IH TG R ++ S G + P +SPDG ++
Sbjct: 203 WSPSGTKVAYVSFERKKP------IVYIHDLPTGRRYMV-SDQKGNNSAPAWSPDGNTLA 255
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + +I+ + +G L+RLTQ+S D P + P
Sbjct: 256 VALSLTGNT--------------QIYSVNSNGGGLRRLTQSSSIDTEPFYSP 293
>gi|15892329|ref|NP_360043.1| translocation protein TolB [Rickettsia conorii str. Malish 7]
gi|32699713|sp|Q92IL4.1|TOLB_RICCN RecName: Full=Protein TolB; Flags: Precursor
gi|15619474|gb|AAL02944.1| tolB protein precursor [Rickettsia conorii str. Malish 7]
Length = 444
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKQLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 QLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|427404987|ref|ZP_18895443.1| tol-Pal system beta propeller repeat protein TolB [Massilia timonae
CCUG 45783]
gi|425716696|gb|EKU79666.1| tol-Pal system beta propeller repeat protein TolB [Massilia timonae
CCUG 45783]
Length = 423
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 127/309 (41%), Gaps = 61/309 (19%)
Query: 381 SSRVGYHKCRGGSTR-------EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
S+R+ Y K + R DG N+++ K P+ IS P++SP G ++
Sbjct: 159 STRIAYVKEDRAANRFALAVADADGENEIIATQGKEPI--IS--------PAWSPDGMKV 208
Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEV 487
A+V P VY+ + R V + ++ W P + S+
Sbjct: 209 AYVSMENRKPVVYLQDLMTGRRNVVSNQKGNNSAPSWSPDGSTLAVA------LSQDGNT 262
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+I ++N S RRLT N + P S DG+ I F S R+G +Y M GG
Sbjct: 263 EIYTVNSSG----SGHRRLTNNPAIDTEPQFSADGQTIYFTSDRSGGPQIYKMSVSGGNA 318
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PNGTGLRKLIQSGS 606
R+T + S DG+ +A+ S R G+F +Y + +G LR
Sbjct: 319 ---TRVTFNGNYNISPRVSSDGKTLAWISQR----GGAFSLYAMDLASGRELRL------ 365
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
A A P FSP+GK I++ + GG + + + +DG +RLT +
Sbjct: 366 ADGATEPSFSPNGKYIMYATKGGGRVSLAV--------------VSVDGRVKQRLTTKAG 411
Query: 667 EDGTPAWGP 675
P+WGP
Sbjct: 412 NIREPSWGP 420
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 141/348 (40%), Gaps = 75/348 (21%)
Query: 280 LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVAT 339
L HR +++ VY+ + G+ ST ++ A A + G N+ IA
Sbjct: 138 LQAHRIADD-----VYEKLTGVRGIFSTRIAYVKEDRAANRFALAVADADGENEIIATQG 192
Query: 340 RRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399
+ P ++P SPD +V Y + E+
Sbjct: 193 KEPI-----------------------------ISPAWSPDGMKVAY------VSMENRK 217
Query: 400 NQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQV 454
+ L+++ + ++ S + + S PS+SP G +A +Y VNS GS R++
Sbjct: 218 PVVYLQDLMTGRRNVVSNQKGNNSAPSWSPDGSTLAVALSQDGNTEIYTVNSSGSGHRRL 277
Query: 455 YFKNAFST--VWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
A T + + + +TS GGP+ S V G +A R +T N
Sbjct: 278 TNNPAIDTEPQFSADGQTIYFTSDRSGGPQIYKMS------------VSGGNATR-VTFN 324
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
G N P VS DGK + + S R G +LY MD G RL +G T ++SP+G
Sbjct: 325 GNYNISPRVSSDGKTLAWISQRGGAFSLYAMDLASGREL---RLADGA---TEPSFSPNG 378
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
++I +A+ G G + ++ +G ++L + AG P + P
Sbjct: 379 KYIMYAT----KGGGRVSLAVVSVDGRVKQRL--TTKAGNIREPSWGP 420
>gi|359784435|ref|ZP_09287607.1| translocation protein TolB [Halomonas sp. GFAJ-1]
gi|359298395|gb|EHK62611.1| translocation protein TolB [Halomonas sp. GFAJ-1]
Length = 428
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 54/255 (21%)
Query: 430 GDRIAFVEFPGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFASESSEV 487
GD + F G+YV ++DG N +QV + S W P G + A S E
Sbjct: 172 GDNMQF----GLYVADADGRNSKQVLTSDQPIMSPSWSP---------DGRKLAYVSFET 218
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
+ +I + DV V+ + G N A P+ SPDG+ I ++ G +YI+D
Sbjct: 219 ERPAIYIQDVATGQRVQATSFEGINGA-PTWSPDGRRIAMSLSKDGQPEIYILDV---AN 274
Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
+ R+T+ DT W+PDG + F SDR SG ++Y R ++ SG
Sbjct: 275 RSVERITQSSSIDTEPAWAPDGRSLIFTSDR----SGGPQIY---------RHVLGSGET 321
Query: 608 GRAN-------HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
R +SPDG+ I H+ ++ + +LDG L
Sbjct: 322 NRVTFTGNYNARARYSPDGEQIFLI--------------HRSSRGYQVARQELDGGRLVV 367
Query: 661 LTQNSFEDGTPAWGP 675
L++++ D +P+ P
Sbjct: 368 LSEST-RDESPSVAP 381
>gi|265984714|ref|ZP_06097449.1| tolB [Brucella sp. 83/13]
gi|306837841|ref|ZP_07470703.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF
2653]
gi|264663306|gb|EEZ33567.1| tolB [Brucella sp. 83/13]
gi|306407080|gb|EFM63297.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF
2653]
Length = 443
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
P SP+ + + + S G +Y++ E G+ + P +SPDG+ + +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMS 271
Query: 576 SDRDNPGSGSFEMYLIHPNGTGL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
+D+ + + M L + T L + I +G++ +SPDG IVFTSD GG
Sbjct: 272 LLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG--- 321
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+P +++ + DGS+ +R++ TP W PR
Sbjct: 322 ---------RP--QLYVMGADGSNPRRISMGDGSYSTPVWSPR 353
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 369 KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSPLPD---- 413
+ L P SP+ V Y GGS + E G +L+ + PD
Sbjct: 209 RALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKV 268
Query: 414 -ISLFRFDGSF------------------------PSFSPKGDRIAFVE----FPGVYVV 444
+SL + DGS S+SP G +I F P +YV+
Sbjct: 269 VMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQLYVM 328
Query: 445 NSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502
+DGSN R++ + ++ST VW P + + +T S+ SI V DG
Sbjct: 329 GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVMKTDGSG- 378
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 379 -ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|261315936|ref|ZP_05955133.1| translocation protein TolB [Brucella pinnipedialis M163/99/10]
gi|261316202|ref|ZP_05955399.1| tolB [Brucella pinnipedialis B2/94]
gi|265987265|ref|ZP_06099822.1| protein tolB [Brucella pinnipedialis M292/94/1]
gi|340791297|ref|YP_004756762.1| translocation protein TolB [Brucella pinnipedialis B2/94]
gi|261295425|gb|EEX98921.1| tolB [Brucella pinnipedialis B2/94]
gi|261304962|gb|EEY08459.1| translocation protein TolB [Brucella pinnipedialis M163/99/10]
gi|264659462|gb|EEZ29723.1| protein tolB [Brucella pinnipedialis M292/94/1]
gi|340559756|gb|AEK54994.1| translocation protein TolB precursor [Brucella pinnipedialis B2/94]
Length = 443
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 60/230 (26%)
Query: 364 RFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSPL 411
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 203 RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFS 262
Query: 412 PD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE----F 438
PD +SL + DGS S+SP G +I F
Sbjct: 263 PDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGR 322
Query: 439 PGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 323 PQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVMK 373
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 374 TDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|398385370|ref|ZP_10543392.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
gi|397720588|gb|EJK81143.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
Length = 1048
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G A+ RLT + + A P SPDGK I F+S RTG +++ + A+G + + + ++G
Sbjct: 78 GGGALTRLTGDFDDLAQPDWSPDGKRIAFQSYRTGNFHIWSVAADGSD---MRQHSDGLL 134
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN--HPYFS 616
D WSPDG IAF+SDR G + +YL+ + L S G N P +S
Sbjct: 135 DDREPRWSPDGRTIAFSSDR---AEGRYAIYLLDVASGQVTPL----SKGTTNDSEPAWS 187
Query: 617 PDGKSIVFTS 626
PDGK+I + +
Sbjct: 188 PDGKTIAYVA 197
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 145/370 (39%), Gaps = 66/370 (17%)
Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRV 384
P SP + + IA ++ R Y I L D+ + L++ T+ P SPD +
Sbjct: 139 PRWSP-DGRTIAFSSDRAEGRYA-IYLLDVASGQVTPLSKGT---TNDSEPAWSPDGKTI 193
Query: 385 GYHKCRGGS---TREDGNNQLLLENIKSPLPDISLFRFDGSF---PSFSPKGDRIAFVEF 438
Y GG+ T + + +P D R++ S P+F+P G IA+
Sbjct: 194 AY--VAGGTKLVTIDIATGAVTEVAAVTPSAD----RYNPSAIMAPAFAPDGS-IAYTRL 246
Query: 439 -PGVYVV---NSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII--- 490
PG + + D +Y F+ AF+ + Y S G A + + II
Sbjct: 247 EPGALTLVHGDKDIVAGEDIYPFRPAFAK-----DGTIFYGSNGKLRALKGGKASIIPFR 301
Query: 491 -SINVDDVDGVSAVRRLTTNGKNN----AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ V D R T+ A P +SPDG+ IVF + ++Y+M G
Sbjct: 302 TQVPVTTPDYKKKARDFTSTTAKPVVGIAAPMLSPDGRTIVFGA----LNDIYVMPVGGT 357
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+L + WSPDG+ IA++ DR G+ +++L H TG + + +
Sbjct: 358 P----KKLVADGYHKCDPAWSPDGKTIAYSCDR----GGTLDLWL-HDVATGKERQLTNI 408
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
+S DG I F G + + ++T ++R+
Sbjct: 409 PDKAVAWGSWSQDGALIAFLDQEGALHSVEVAT-----------------GTVRRIFDAL 451
Query: 666 FEDGTPAWGP 675
+E G P++GP
Sbjct: 452 WEPGRPSFGP 461
>gi|17986622|ref|NP_539256.1| translocation protein TolB [Brucella melitensis bv. 1 str. 16M]
gi|260565802|ref|ZP_05836285.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265991732|ref|ZP_06104289.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1]
gi|32699715|sp|Q93TG4.1|TOLB_BRUME RecName: Full=Protein TolB; Flags: Precursor
gi|13898976|gb|AAK48918.1|AF358662_5 TolB protein [Brucella melitensis]
gi|17982236|gb|AAL51520.1| tolb protein [Brucella melitensis bv. 1 str. 16M]
gi|260151175|gb|EEW86270.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|263002688|gb|EEZ15091.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1]
Length = 443
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 60/230 (26%)
Query: 364 RFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSPL 411
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 203 RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFS 262
Query: 412 PD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE----F 438
PD +SL + DGS S+SP G +I F
Sbjct: 263 PDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGR 322
Query: 439 PGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 323 PQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVMK 373
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 374 TDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|306841416|ref|ZP_07474118.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp.
BO2]
gi|306844689|ref|ZP_07477274.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
inopinata BO1]
gi|306274861|gb|EFM56631.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
inopinata BO1]
gi|306288522|gb|EFM59874.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp.
BO2]
Length = 443
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|161619626|ref|YP_001593513.1| translocation protein TolB [Brucella canis ATCC 23365]
gi|260568782|ref|ZP_05839250.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376275698|ref|YP_005116137.1| Tol biopolymer transport system periplasmic protein [Brucella canis
HSK A52141]
gi|189035979|sp|A9M7J5.1|TOLB_BRUC2 RecName: Full=Protein TolB; Flags: Precursor
gi|161336437|gb|ABX62742.1| Tol-Pal system beta propeller repeat protein TolB [Brucella canis
ATCC 23365]
gi|260154166|gb|EEW89248.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363404265|gb|AEW14560.1| Periplasmic component of the Tol biopolymer transport system
[Brucella canis HSK A52141]
Length = 443
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|375265016|ref|YP_005022459.1| translocation protein TolB [Vibrio sp. EJY3]
gi|369840339|gb|AEX21483.1| translocation protein TolB [Vibrio sp. EJY3]
Length = 450
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K PS SPDG+ + + S + G +YIM+ GE
Sbjct: 202 LRVSDYDGYN--ERLVLRSKQPLMSPSWSPDGQKLAYVSFQNGQSEIYIMNIYTGE---R 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG +A + +GS ++Y L ++ + GR+
Sbjct: 257 EKITSYPRHNGAPKFSPDGSKLALVLSK----TGSLQVYTFDLRSRQLTQITR----GRS 308
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS+VFTSD GG +P +I+++ L D RLT
Sbjct: 309 NNTEPFWHPDGKSLVFTSDRGG------------KP--QIYQVDLGSGDTNRLT 348
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 35/215 (16%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD ++ Y ++G +++ + NI + + S R +G+ P FSP G
Sbjct: 223 MSPSWSPDGQKLAYVSF------QNGQSEIYIMNIYTGEREKITSYPRHNGA-PKFSPDG 275
Query: 431 DRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFST----VWDPVREAVVYTS---GGPEFA 481
++A V + + V D +R+ S W P +++V+TS G P+
Sbjct: 276 SKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIY 335
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
+VD+ G RLT G N ++PDG+++V + NL D
Sbjct: 336 ----QVDL---------GSGDTNRLTWQGSQNLSGQITPDGRFLVMVNRSDSGFNLAKQD 382
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
E G L LT+ D + +P+G + ++S
Sbjct: 383 LETG---ALQVLTK-TLLDESPSIAPNGGMVVYSS 413
>gi|397691622|ref|YP_006528876.1| periplasmic component of the Tol biopolymer transport system-like
protein [Melioribacter roseus P3M]
gi|395813114|gb|AFN75863.1| periplasmic component of the Tol biopolymer transport system-like
protein [Melioribacter roseus P3M]
Length = 482
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 441 VYVVNSDGSNRRQVYFKN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499
+YV+ DG + V K ++ W P + +VY A + DI I D+DG
Sbjct: 299 IYVLPGDGGIPQLVTRKGPSYWHGWSPDSKYLVYC------AERNGNFDIYKI---DIDG 349
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+ +R G ++ P SPDGK+I F S RTG ++ MDA+GG ++T ++
Sbjct: 350 KNEIRLTDAEGLDDG-PEFSPDGKYIYFNSERTGKMKIWRMDADGGN---QTQITADEFN 405
Query: 560 DTMCNWSPDGEWIAFASDR----DNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPY 614
D + SPD ++I F S +P + + + L++ + + + G G N P
Sbjct: 406 DWFPHPSPDNKYIVFLSYAPDVTGHPPNKNVLLRLLNLQDGSIETIAELFGGQGTINVPS 465
Query: 615 FSPDGKSIVFTS 626
+SPDGK F S
Sbjct: 466 WSPDGKRFAFVS 477
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 25/155 (16%)
Query: 518 VSPDGKWIVFRS-TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
+S DGK + + + G +Y++ +GG + R W WSPD +++ + +
Sbjct: 279 LSADGKMLAISNHDKDGLSRIYVLPGDGGIPQLVTRKGPSYWH----GWSPDSKYLVYCA 334
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
+R+ G+F++Y I +G +L + + G + P FSPDGK I F S+ G
Sbjct: 335 ERN----GNFDIYKIDIDGKNEIRL--TDAEGLDDGPEFSPDGKYIYFNSERTGKM---- 384
Query: 637 STPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+I+++ DG + ++T + F D P
Sbjct: 385 ----------KIWRMDADGGNQTQITADEFNDWFP 409
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 484 SSEVDIISINVDDVDGVS---------AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S++ +++I+ D DG+S + +L T + + SPD K++V+ + R G
Sbjct: 280 SADGKMLAISNHDKDGLSRIYVLPGDGGIPQLVTRKGPSYWHGWSPDSKYLVYCAERNGN 339
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
++Y +D +G RLT+ D +SPDG++I F S+R +G +++ + +
Sbjct: 340 FDIYKIDIDGKNEI---RLTDAEGLDDGPEFSPDGKYIYFNSER----TGKMKIWRMDAD 392
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
G ++ HP SPD K IVF S ++ P
Sbjct: 393 GGNQTQITADEFNDWFPHP--SPDNKYIVFLSYAPDVTGHP 431
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 477 GPEFASE-------SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
GPEF+ + S + I D DG + + +T + N+ FP SPD K+IVF S
Sbjct: 364 GPEFSPDGKYIYFNSERTGKMKIWRMDADGGNQTQ-ITADEFNDWFPHPSPDNKYIVFLS 422
Query: 530 TR---TGY---KN--LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
TG+ KN L +++ + G + L G + + +WSPDG+ AF S R
Sbjct: 423 YAPDVTGHPPNKNVLLRLLNLQDGSIETIAELFGGQGTINVPSWSPDGKRFAFVSYR 479
>gi|387901441|ref|YP_006331780.1| tolB protein precursor [Burkholderia sp. KJ006]
gi|387576333|gb|AFJ85049.1| tolB protein precursor [Burkholderia sp. KJ006]
Length = 419
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 189 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 245
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG WI F S R G +
Sbjct: 246 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGHWIYFTSDRGGAPQI 298
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 299 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 347
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 348 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 384
>gi|71909662|ref|YP_287249.1| translocation protein TolB [Dechloromonas aromatica RCB]
gi|71849283|gb|AAZ48779.1| TolB, N-terminal:WD40-like Beta Propeller [Dechloromonas aromatica
RCB]
Length = 437
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 59/310 (19%)
Query: 381 SSRVGYH-KCRGGSTRE--DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y K RG + D + Q + S P IS P +SP G R+A+V
Sbjct: 173 STRIAYVVKARGQFLLQIADSDGQNAATALSSTEPIIS--------PVWSPDGGRLAYVS 224
Query: 438 F----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVD 488
F P +YV ++ S +R + FK + S W P + AVV + G
Sbjct: 225 FEKKKPVIYV-HTLASGQRHIVANFKGSNSAPAWSPDGRKLAVVLSKDG--------NSQ 275
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I S+N D S ++R+T + + P S DG I F S R G +Y + A GG+
Sbjct: 276 IYSVNADG----SGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGASGGDA- 330
Query: 549 GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R+T EG + + +PDG+ +AF S R+ G F++ ++ R++ +
Sbjct: 331 --KRVTFEGSY-NVSPRPAPDGKSLAFISRRE----GRFQLAVMD---LASRQVQVVSDS 380
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+ P F+P+ + I+ ++ GG G + + DG +RL+ + +
Sbjct: 381 NKDESPSFAPNSRMILIATEIGG--------------RGVLSAVSSDGRIKQRLSVAAGD 426
Query: 668 DGTPAWGPRF 677
PAWGP +
Sbjct: 427 VREPAWGPYY 436
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD R+ Y E + + + S I + F+ S P++SP G
Sbjct: 209 ISPVWSPDGGRLAYVSF------EKKKPVIYVHTLASGQRHIVANFKGSNSAPAWSPDGR 262
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREA----VVYTS---GGPEF 480
++A V +Y VN+DGS +++ + T +P A + +TS G P+
Sbjct: 263 KLAVVLSKDGNSQIYSVNADGSGLQRITQSSGIDT--EPRYSADGGTIYFTSDRGGSPQ- 319
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
+ + D +R+T G N P +PDGK + F S R G L +M
Sbjct: 320 --------VYQVGASGGD----AKRVTFEGSYNVSPRPAPDGKSLAFISRREGRFQLAVM 367
Query: 541 D 541
D
Sbjct: 368 D 368
>gi|374319119|ref|YP_005065618.1| TolB protein precursor [Rickettsia slovaca 13-B]
gi|383751056|ref|YP_005426157.1| translocation protein TolB [Rickettsia slovaca str. D-CWPP]
gi|360041668|gb|AEV92050.1| TolB protein precursor [Rickettsia slovaca 13-B]
gi|379774070|gb|AFD19426.1| translocation protein TolB [Rickettsia slovaca str. D-CWPP]
Length = 444
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ + P +IF I L G + +R + P W
Sbjct: 402 GWPSSAKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|116622694|ref|YP_824850.1| serine/threonine protein kinase [Candidatus Solibacter usitatus
Ellin6076]
gi|116225856|gb|ABJ84565.1| serine/threonine protein kinase [Candidatus Solibacter usitatus
Ellin6076]
Length = 853
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 40/260 (15%)
Query: 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV------YFKNAFSTVWDPVREAVVYT 474
G P+FS G+R+ F ++V +DGS R+V Y+ E + ++
Sbjct: 422 GRNPNFSGDGERLVFERGHQIWVARTDGSEARRVEGVPEWYYGMDSLPALSAHGEWIAFS 481
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
P+ I S RRLT + + + P +PD +WI++ S R G
Sbjct: 482 R--PQIGPHGDLWVIPSAG-------GKARRLTFDTRISTGPVWTPDDQWIIYSSMRGGS 532
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
L+ + A GG+ LT G DT S DG + + + R+ ++++ L+
Sbjct: 533 FTLWRVAAAGGK---PEALTTGAGEDTDAAISSDGRHLIYTNARN-----TWKLALLDL- 583
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
TG +K + G A P FSPDG+ I F G +P +IF I+ D
Sbjct: 584 ATGKQKELMERRNGLA-FPSFSPDGERIAFMQVAAG---DP-----------QIFTIRRD 628
Query: 655 GSDLKRLTQNSFE-DGTPAW 673
G++++++T E +G P W
Sbjct: 629 GTEMRQMTLGKGEINGLPRW 648
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 46/207 (22%)
Query: 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+S +R +T ++ + SPDG I F +T G +++ + G+ ++T G
Sbjct: 327 LSGLRLASTFAGSHRSATFSPDGSMIAFLNTANGPAQIWVKNLAQGDPI---QITSGNLP 383
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619
+WSP + I F+ G G ++ + P G R+LI+ G +P FS DG
Sbjct: 384 AVQPHWSPKNDQIVFSRQ----GQG---IWSVPPLGGTPRQLIRPG-----RNPNFSGDG 431
Query: 620 KSIVFTSD----------------------YGGISAEPISTPH---------QYQPYGEI 648
+ +VF Y G+ + P + H Q P+G++
Sbjct: 432 ERLVFERGHQIWVARTDGSEARRVEGVPEWYYGMDSLPALSAHGEWIAFSRPQIGPHGDL 491
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ I G +RLT ++ P W P
Sbjct: 492 WVIPSAGGKARRLTFDTRISTGPVWTP 518
>gi|421468066|ref|ZP_15916636.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC BAA-247]
gi|421480495|ref|ZP_15928118.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CF2]
gi|400221053|gb|EJO51542.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CF2]
gi|400232682|gb|EJO62281.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC BAA-247]
Length = 419
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 189 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 245
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I S+N + +RRLT + + P SPDG WI F S R G +
Sbjct: 246 ---LSLTGNTQIYSVNSNG----GGLRRLTQSSSIDTEPFYSPDGHWIYFTSDRGGAPQI 298
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 299 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 347
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 348 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 384
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 565 WSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
WSP G +A+ S +R P + IH TG R ++ S G + P +SPDG ++
Sbjct: 191 WSPSGTKVAYVSFERKKP------IVYIHDLPTGRRYMV-SDQKGNNSAPAWSPDGNTLA 243
Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + +I+ + +G L+RLTQ+S D P + P
Sbjct: 244 VALSLTGNT--------------QIYSVNSNGGGLRRLTQSSSIDTEPFYSP 281
>gi|319406262|emb|CBI79899.1| TolB protein [Bartonella sp. AR 15-3]
Length = 440
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P FSPK I ++ + P VY+ + R + +D + A ++ G
Sbjct: 210 PRFSPKRQEITYMAYDKNKTPHVYLQQMEIGQRELL-------GTFDNMTIAPRFSPNGQ 262
Query: 479 EFASESSEVDIISINVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + D S N+ +D + RLT + S SPDG IVF S R+G +
Sbjct: 263 KVIMSLLQNDG-SANLYTMDLRTRQMTRLTATKAIDTSASYSPDGTKIVFSSDRSGKPQI 321
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M+ +G + L R++ S + WSP G++IAF G F + ++HP+G G
Sbjct: 322 YTMNVDGSD---LQRISSNEGSYSTPIWSPRGDYIAFTKQ----FQGQFSIGVMHPDGKG 374
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G + +I+ I + G
Sbjct: 375 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNPGEGS-------------KIYTIDITGR 417
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +RL + + PAW P
Sbjct: 418 N-ERLLRTPNDASDPAWSP 435
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 19/112 (16%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SP+G+ + + +++ GS +Y + + +L + + + +SPDG IVF
Sbjct: 257 FSPNGQKVIMSLLQND---GSANLYTMDLRTRQMTRLTATKAIDTSAS--YSPDGTKIVF 311
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+SD G +P +I+ + +DGSDL+R++ N TP W PR
Sbjct: 312 SSDRSG------------KP--QIYTMNVDGSDLQRISSNEGSYSTPIWSPR 349
>gi|260772527|ref|ZP_05881443.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14]
gi|260611666|gb|EEX36869.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14]
Length = 450
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDG+ + + S + G ++IMD GE
Sbjct: 202 LRVADYDGYN--ERLVLRSKQPLMSPAWSPDGRQLAYVSFQNGQAEIFIMDIYTGER--- 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
+LT P + +SPDG+ +A + +G+ ++Y + RKL Q + GR+
Sbjct: 257 EKLTSYPRHNGAPRFSPDGKTLALVLSK----TGTLQVYTLD---LASRKLTQI-THGRS 308
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG P +I+++ L + RLT
Sbjct: 309 NNTEPFWHPDGKSLIFTSDRGG---NP-----------QIYRVNLANQAVDRLT 348
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 54/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N+ L+ K PL P++SP G ++A+V F + + +++
Sbjct: 208 DGYNERLVLRSKQPLMS----------PAWSPDGRQLAYVSFQ---------NGQAEIFI 248
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDII-----SINVDDVDGVSAVRRLT--TN 509
+ ++ + + + +G P F+ + + ++ ++ V +D S R+LT T+
Sbjct: 249 MDIYTGEREKLTSYPRH-NGAPRFSPDGKTLALVLSKTGTLQVYTLDLAS--RKLTQITH 305
Query: 510 GK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
G+ NN P PDGK ++F S R G +Y ++ + RLT + +PD
Sbjct: 306 GRSNNTEPFWHPDGKSLIFTSDRGGNPQIYRVNL---ANQAVDRLTWQGRQNLGGQITPD 362
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G ++ +R N G F + L+ L Q+ P +P+G ++++S Y
Sbjct: 363 GRFMIMV-NRSNSG---FHIAKQDLETGALQVLTQT---LLDESPSIAPNGGMVIYSSMY 415
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ + + +DG RL + +PAW P
Sbjct: 416 NQANV--------------LSMVSIDGRFKARLPATNGRVRSPAWSP 448
>gi|118574577|sp|Q478F2.2|TOLB_DECAR RecName: Full=Protein TolB; Flags: Precursor
Length = 426
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 59/310 (19%)
Query: 381 SSRVGYH-KCRGGSTRE--DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y K RG + D + Q + S P IS P +SP G R+A+V
Sbjct: 162 STRIAYVVKARGQFLLQIADSDGQNAATALSSTEPIIS--------PVWSPDGGRLAYVS 213
Query: 438 F----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVD 488
F P +YV ++ S +R + FK + S W P + AVV + G
Sbjct: 214 FEKKKPVIYV-HTLASGQRHIVANFKGSNSAPAWSPDGRKLAVVLSKDG--------NSQ 264
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548
I S+N D S ++R+T + + P S DG I F S R G +Y + A GG+
Sbjct: 265 IYSVNADG----SGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGASGGDA- 319
Query: 549 GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
R+T EG + + +PDG+ +AF S R+ G F++ ++ R++ +
Sbjct: 320 --KRVTFEGSY-NVSPRPAPDGKSLAFISRRE----GRFQLAVMD---LASRQVQVVSDS 369
Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
+ P F+P+ + I+ ++ GG G + + DG +RL+ + +
Sbjct: 370 NKDESPSFAPNSRMILIATEIGG--------------RGVLSAVSSDGRIKQRLSVAAGD 415
Query: 668 DGTPAWGPRF 677
PAWGP +
Sbjct: 416 VREPAWGPYY 425
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGD 431
++P SPD R+ Y E + + + S I + F+ S P++SP G
Sbjct: 198 ISPVWSPDGGRLAYVSF------EKKKPVIYVHTLASGQRHIVANFKGSNSAPAWSPDGR 251
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREA----VVYTS---GGPEF 480
++A V +Y VN+DGS +++ + T +P A + +TS G P+
Sbjct: 252 KLAVVLSKDGNSQIYSVNADGSGLQRITQSSGIDT--EPRYSADGGTIYFTSDRGGSPQ- 308
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
+ + D +R+T G N P +PDGK + F S R G L +M
Sbjct: 309 --------VYQVGASGGD----AKRVTFEGSYNVSPRPAPDGKSLAFISRREGRFQLAVM 356
Query: 541 D 541
D
Sbjct: 357 D 357
>gi|23502555|ref|NP_698682.1| translocation protein TolB [Brucella suis 1330]
gi|376281350|ref|YP_005155356.1| translocation protein TolB [Brucella suis VBI22]
gi|384225342|ref|YP_005616506.1| translocation protein TolB [Brucella suis 1330]
gi|32699703|sp|Q8FZ07.1|TOLB_BRUSU RecName: Full=Protein TolB; Flags: Precursor
gi|23348555|gb|AAN30597.1| tolB protein [Brucella suis 1330]
gi|343383522|gb|AEM19014.1| translocation protein TolB [Brucella suis 1330]
gi|358258949|gb|AEU06684.1| translocation protein TolB [Brucella suis VBI22]
Length = 443
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|62290569|ref|YP_222362.1| translocation protein TolB [Brucella abortus bv. 1 str. 9-941]
gi|82700485|ref|YP_415059.1| translocation protein TolB [Brucella melitensis biovar Abortus
2308]
gi|189024787|ref|YP_001935555.1| translocation protein TolB [Brucella abortus S19]
gi|225628265|ref|ZP_03786299.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti
str. Cudo]
gi|225853152|ref|YP_002733385.1| translocation protein TolB [Brucella melitensis ATCC 23457]
gi|237816074|ref|ZP_04595070.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
str. 2308 A]
gi|256263356|ref|ZP_05465888.1| protein tolB [Brucella melitensis bv. 2 str. 63/9]
gi|256370106|ref|YP_003107617.1| translocation protein TolB [Brucella microti CCM 4915]
gi|260547187|ref|ZP_05822925.1| tolB [Brucella abortus NCTC 8038]
gi|260755396|ref|ZP_05867744.1| protein tolB [Brucella abortus bv. 6 str. 870]
gi|260758618|ref|ZP_05870966.1| protein tolB [Brucella abortus bv. 4 str. 292]
gi|260762450|ref|ZP_05874787.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59]
gi|260884412|ref|ZP_05896026.1| protein tolB [Brucella abortus bv. 9 str. C68]
gi|261214667|ref|ZP_05928948.1| protein tolB [Brucella abortus bv. 3 str. Tulya]
gi|261222821|ref|ZP_05937102.1| protein tolB [Brucella ceti B1/94]
gi|261325738|ref|ZP_05964935.1| protein tolB [Brucella neotomae 5K33]
gi|261750852|ref|ZP_05994561.1| protein tolB [Brucella suis bv. 5 str. 513]
gi|261757350|ref|ZP_06001059.1| protein tolB [Brucella sp. F5/99]
gi|265995569|ref|ZP_06108126.1| protein tolB [Brucella melitensis bv. 3 str. Ether]
gi|265998780|ref|ZP_06111337.1| protein tolB [Brucella ceti M490/95/1]
gi|294850948|ref|ZP_06791624.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp.
NVSL 07-0026]
gi|297248968|ref|ZP_06932676.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus
bv. 5 str. B3196]
gi|376272578|ref|YP_005151156.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Brucella abortus A13334]
gi|384212053|ref|YP_005601136.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Brucella melitensis M5-90]
gi|384409163|ref|YP_005597784.1| TolB, N-terminal protein, partial [Brucella melitensis M28]
gi|384445718|ref|YP_005604437.1| translocation protein TolB [Brucella melitensis NI]
gi|423169301|ref|ZP_17156002.1| protein tolB [Brucella abortus bv. 1 str. NI435a]
gi|423172550|ref|ZP_17159223.1| protein tolB [Brucella abortus bv. 1 str. NI474]
gi|423175686|ref|ZP_17162354.1| protein tolB [Brucella abortus bv. 1 str. NI486]
gi|423178756|ref|ZP_17165399.1| protein tolB [Brucella abortus bv. 1 str. NI488]
gi|423181888|ref|ZP_17168527.1| protein tolB [Brucella abortus bv. 1 str. NI010]
gi|423185111|ref|ZP_17171746.1| protein tolB [Brucella abortus bv. 1 str. NI016]
gi|423188265|ref|ZP_17174877.1| protein tolB [Brucella abortus bv. 1 str. NI021]
gi|423191405|ref|ZP_17178012.1| protein tolB [Brucella abortus bv. 1 str. NI259]
gi|75496344|sp|Q57BI3.1|TOLB_BRUAB RecName: Full=Protein TolB; Flags: Precursor
gi|119371037|sp|Q2YRD7.1|TOLB_BRUA2 RecName: Full=Protein TolB; Flags: Precursor
gi|226705866|sp|B2S7D4.1|TOLB_BRUA1 RecName: Full=Protein TolB; Flags: Precursor
gi|254764838|sp|C0REV9.1|TOLB_BRUMB RecName: Full=Protein TolB; Flags: Precursor
gi|62196701|gb|AAX75001.1| TolB, tolB protein [Brucella abortus bv. 1 str. 9-941]
gi|82616586|emb|CAJ11665.1| TolB, N-terminal [Brucella melitensis biovar Abortus 2308]
gi|189020359|gb|ACD73081.1| TolB, N-terminal [Brucella abortus S19]
gi|225616111|gb|EEH13159.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti
str. Cudo]
gi|225641517|gb|ACO01431.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
melitensis ATCC 23457]
gi|237788737|gb|EEP62949.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
str. 2308 A]
gi|256000269|gb|ACU48668.1| translocation protein TolB precursor [Brucella microti CCM 4915]
gi|260095552|gb|EEW79430.1| tolB [Brucella abortus NCTC 8038]
gi|260668936|gb|EEX55876.1| protein tolB [Brucella abortus bv. 4 str. 292]
gi|260672876|gb|EEX59697.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59]
gi|260675504|gb|EEX62325.1| protein tolB [Brucella abortus bv. 6 str. 870]
gi|260873940|gb|EEX81009.1| protein tolB [Brucella abortus bv. 9 str. C68]
gi|260916274|gb|EEX83135.1| protein tolB [Brucella abortus bv. 3 str. Tulya]
gi|260921405|gb|EEX88058.1| protein tolB [Brucella ceti B1/94]
gi|261301718|gb|EEY05215.1| protein tolB [Brucella neotomae 5K33]
gi|261737334|gb|EEY25330.1| protein tolB [Brucella sp. F5/99]
gi|261740605|gb|EEY28531.1| protein tolB [Brucella suis bv. 5 str. 513]
gi|262553469|gb|EEZ09238.1| protein tolB [Brucella ceti M490/95/1]
gi|262766853|gb|EEZ12471.1| protein tolB [Brucella melitensis bv. 3 str. Ether]
gi|263093355|gb|EEZ17424.1| protein tolB [Brucella melitensis bv. 2 str. 63/9]
gi|294821591|gb|EFG38587.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp.
NVSL 07-0026]
gi|297174101|gb|EFH33458.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus
bv. 5 str. B3196]
gi|326409710|gb|ADZ66775.1| TolB, N-terminal protein [Brucella melitensis M28]
gi|326539417|gb|ADZ87632.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
melitensis M5-90]
gi|349743707|gb|AEQ09250.1| translocation protein TolB [Brucella melitensis NI]
gi|363400184|gb|AEW17154.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
A13334]
gi|374535120|gb|EHR06647.1| protein tolB [Brucella abortus bv. 1 str. NI486]
gi|374535313|gb|EHR06839.1| protein tolB [Brucella abortus bv. 1 str. NI474]
gi|374535487|gb|EHR07009.1| protein tolB [Brucella abortus bv. 1 str. NI435a]
gi|374544643|gb|EHR16112.1| protein tolB [Brucella abortus bv. 1 str. NI488]
gi|374544810|gb|EHR16275.1| protein tolB [Brucella abortus bv. 1 str. NI010]
gi|374545088|gb|EHR16552.1| protein tolB [Brucella abortus bv. 1 str. NI016]
gi|374552916|gb|EHR24338.1| protein tolB [Brucella abortus bv. 1 str. NI021]
gi|374553110|gb|EHR24531.1| protein tolB [Brucella abortus bv. 1 str. NI259]
Length = 443
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 363 TRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSP 410
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 202 VRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRF 261
Query: 411 LPD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE---- 437
PD +SL + DGS S+SP G +I F
Sbjct: 262 SPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGG 321
Query: 438 FPGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVD 495
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 322 RPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVM 372
Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 373 KTDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|159901044|ref|YP_001547291.1| serine/threonine protein kinase [Herpetosiphon aurantiacus DSM 785]
gi|159894083|gb|ABX07163.1| serine/threonine protein kinase [Herpetosiphon aurantiacus DSM 785]
Length = 642
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 441 VYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
++ ++++GS+ +Q+ S W P + + S + S + I + D D
Sbjct: 435 IFTISANGSDEQQLTSAPGESRAPRWSPDGSKIAFESD-----RDHSNNNSFDIYIMDAD 489
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP- 557
G S V+R+T G P+ SPDG + F S +G + ++D + Y L + +
Sbjct: 490 G-SNVQRVTAEGGWQGGPAWSPDGTKLAFHSQTSGLYEIVVLDLTTNKQYLLASVDDSAF 548
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
W+D WSPDG+ IAF + ++ + ++Y + +G R+L G+ G+ P +SP
Sbjct: 549 WAD----WSPDGQTIAFMTGDNDSRT---KIYTVPTSGGEPRELTNLGT-GKNRWPRWSP 600
Query: 618 DGKSIVFTS---DYGGISAEPIST 638
DG+ + F S D+ GI + ++T
Sbjct: 601 DGRYLAFESYRNDHWGIYLQHLAT 624
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
AV + + +NA S + + G + ++ + A G + +LT P
Sbjct: 400 AVSEVVPHHDDNAIASRRRSDGRVAYSHGVDGLEQIFTISANGSDE---QQLTSAPGESR 456
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
WSPDG IAF SDRD+ + SF++Y++ +G+ ++++ G G P +SPDG
Sbjct: 457 APRWSPDGSKIAFESDRDHSNNNSFDIYIMDADGSNVQRVTAEG--GWQGGPAWSPDGTK 514
Query: 622 IVFTSDYGGI 631
+ F S G+
Sbjct: 515 LAFHSQTSGL 524
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 336 AVATRRPTS---SYRH-----IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387
A+A+RR + +Y H ++F + N E + S P SPD S++ +
Sbjct: 412 AIASRRRSDGRVAYSHGVDGLEQIFTISANGSDE-QQLTSAPGESRAPRWSPDGSKIAFE 470
Query: 388 KCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF---PSFSPKGDRIAF-VEFPGVY- 442
R S NN + + + ++ +G + P++SP G ++AF + G+Y
Sbjct: 471 SDRDHSN----NNSFDIYIMDADGSNVQRVTAEGGWQGGPAWSPDGTKLAFHSQTSGLYE 526
Query: 443 VVNSDGSNRRQVYFKN----AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+V D + +Q + AF W P + + + +G S I ++
Sbjct: 527 IVVLDLTTNKQYLLASVDDSAFWADWSPDGQTIAFMTG-----DNDSRTKIYTVPTSG-- 579
Query: 499 GVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
R LT G N +P SPDG+++ F S R + +Y+ G+ + L++G
Sbjct: 580 --GEPRELTNLGTGKNRWPRWSPDGRYLAFESYRNDHWGIYLQHLATGK---VEALSDGT 634
Query: 558 WSDTMCNW 565
D +W
Sbjct: 635 RHDRWPSW 642
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
G +++ I NG+ ++L + RA P +SPDG I F SD H
Sbjct: 431 GLEQIFTISANGSDEQQLTSAPGESRA--PRWSPDGSKIAFESDRD----------HSNN 478
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+I+ + DGS+++R+T G PAW P
Sbjct: 479 NSFDIYIMDADGSNVQRVTAEGGWQGGPAWSP 510
>gi|134294844|ref|YP_001118579.1| translocation protein TolB [Burkholderia vietnamiensis G4]
gi|166229977|sp|A4JBU1.1|TOLB_BURVG RecName: Full=Protein TolB; Flags: Precursor
gi|134138001|gb|ABO53744.1| TolB, N-terminal domain protein [Burkholderia vietnamiensis G4]
Length = 431
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 PAWSPSGTKVAYVSFERKKPIVYIHDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N + +RRLT + + P SPDG WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNANG----GGLRRLTQSSSIDTEPFYSPDGHWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 396
>gi|379023121|ref|YP_005299782.1| translocation protein TolB [Rickettsia canadensis str. CA410]
gi|376324059|gb|AFB21300.1| translocation protein TolB [Rickettsia canadensis str. CA410]
Length = 444
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 37/262 (14%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P F+ D+I +V + + RR + ++ T + + S P F+ +
Sbjct: 203 PRFARSVDKIFYVSY---------ATKRRALIYEKDLKTGKESIVSDFAGISFAPRFSPD 253
Query: 484 SSEVDIISI------NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++SI ++ ++D + +LT N PS SPDGK IV+ S R G
Sbjct: 254 GRKA-VMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQ 312
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGSGSFEMYLIHP-- 593
LYIM+++G + R++ G S +WSP G++IAF R GS +F + ++
Sbjct: 313 LYIMNSDGSN---VKRISFGGGSYAAPSWSPRGDYIAFTKITRGEDGSKTFNIGIMKAYP 369
Query: 594 -NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+ ++I SG P +SP+G+ I+F + + P +IF I
Sbjct: 370 QDDENSERIITSGYL--VESPCWSPNGRVIMFAKGWPSRAKAP--------GKNKIFAID 419
Query: 653 LDGSDLKRLTQNSFEDGT-PAW 673
L G + + + + ED + P W
Sbjct: 420 LTGHNEREII--TPEDASDPEW 439
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG + ++ GS +Y I L KL + G P +SPDGK IV+
Sbjct: 250 FSPDGRKAVMSIAKN----GSTHIYEIDLATKQLHKL--TDGFGINTSPSYSPDGKKIVY 303
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD G+ +++ + DGS++KR++ P+W PR
Sbjct: 304 NSDRNGVP--------------QLYIMNSDGSNVKRISFGGGSYAAPSWSPR 341
>gi|148656436|ref|YP_001276641.1| peptidase S41 [Roseiflexus sp. RS-1]
gi|148568546|gb|ABQ90691.1| peptidase S41 [Roseiflexus sp. RS-1]
Length = 1082
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 93/223 (41%), Gaps = 30/223 (13%)
Query: 423 FPSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSG 476
P +SP G IA VYVV DG R+V + + S V W P A+ +TS
Sbjct: 53 LPRWSPDGAAIACTSTRTGQGDVYVVPLDGGEVRRVTYHDTQSAVECWSPDGNAIYFTS- 111
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT---- 532
E +I + G + +R + + SVSP G+WI F R
Sbjct: 112 -------QRERQGTAIYRVAISGDTPIRWIAQPYERLGTVSVSPCGRWIAFSLLRDPWWR 164
Query: 533 ------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586
G L++ + + RL++ P + W+PD I F SDRD G
Sbjct: 165 RGPNPYGGAELWLA-SNAPDADDFQRLSDAPGLNYCPMWTPDSGLIYFVSDRD----GCE 219
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
++++ P G+ + + S + GR P S DGK I F D+G
Sbjct: 220 NLWVV-PRDGGVAERVTSFTDGRLLWPSISADGKKIAFERDFG 261
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 110/274 (40%), Gaps = 67/274 (24%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFA 481
PS P G+R+AFV +++V +DG ++ A + W P A+ TS
Sbjct: 14 PSLDPTGNRVAFVYAGDIWLVAADGGRAERLTAHPAGHMLPRWSPDGAAIACTS------ 67
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
+ + + D+ + +D VRR+T + +A SPDG I F S R
Sbjct: 68 TRTGQGDVYVVPLDG----GEVRRVTYHDTQSAVECWSPDGNAIYFTSQRE--------- 114
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNW-------------SPDGEWIAFASDRD-------NP 581
+G ++R+ DT W SP G WIAF+ RD NP
Sbjct: 115 ---RQGTAIYRVAIS--GDTPIRWIAQPYERLGTVSVSPCGRWIAFSLLRDPWWRRGPNP 169
Query: 582 GSGSFEMYLIH--PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
G+ E++L P+ ++L S + G P ++PD I F SD G
Sbjct: 170 YGGA-ELWLASNAPDADDFQRL--SDAPGLNYCPMWTPDSGLIYFVSDRDGCE------- 219
Query: 640 HQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
++ + DG +R+T SF DG W
Sbjct: 220 -------NLWVVPRDGGVAERVT--SFTDGRLLW 244
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 96/241 (39%), Gaps = 41/241 (17%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRR-----------QVYFKNAFSTVWDPVREAVVY 473
+ SP G +IAF+ ++ +D N R Q F+++ W P ++VY
Sbjct: 301 ALSPDGKKIAFIVRGKIFADFADKENERDPRQGLAYRVSQTAFRDS-DVSWSPDSRSLVY 359
Query: 474 TSG--GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
S G E + D G S R LT K + P SPDG+WI + S
Sbjct: 360 VSDRHGDE-----------EVYRYDFPGRSETR-LTYGPKRKSAPCFSPDGRWIAYAS-- 405
Query: 532 TGYKNLYIMDAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
G + ++D G G R G +WSPD W+AF + + S +
Sbjct: 406 -GDDEIRLIDVVSGADRGFIRAHFVFG----ASFSWSPDSRWLAFCAQDERFFSNLYVQR 460
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ + L +AG P +SPDG+ IVFT+ G AE QP IF
Sbjct: 461 IDEEQPHQISFLSNIQAAG----PLWSPDGRFIVFTT--GQYRAESQIARVDLQPQPPIF 514
Query: 650 K 650
+
Sbjct: 515 R 515
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 101/454 (22%), Positives = 169/454 (37%), Gaps = 78/454 (17%)
Query: 206 GLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI 265
G RLT + P SP G A+A + G D+Y+ + DG + ++
Sbjct: 39 GRAERLTAHPAGHMLPRWSPDG--AAIACTSTRTGQG-------DVYV-VPLDGGEVRRV 88
Query: 266 V---ENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHA 322
CW + + E ++Y+V + + I+ + P
Sbjct: 89 TYHDTQSAVECWSPDGNAIYFTSQRERQGTAIYRVAI-------SGDTPIRWIAQPYERL 141
Query: 323 FTPATSPGNNKFIAVAT------RRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLN 374
T + SP ++IA + RR + Y EL+ L N + R +
Sbjct: 142 GTVSVSP-CGRWIAFSLLRDPWWRRGPNPYGGAELW-LASNAPDADDFQRLSDAPGLNYC 199
Query: 375 PFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK 429
P +PDS + + R G DG + E + S D L +PS S
Sbjct: 200 PMWTPDSGLIYFVSDRDGCENLWVVPRDGG---VAERVTS-FTDGRLL-----WPSISAD 250
Query: 430 GDRIAFVEFPGVYVVNSDGSN-----------------RRQVYFKNAFSTVWDPVREAVV 472
G +IAF G+++ + + R Q Y ++ P + +
Sbjct: 251 GKKIAFERDFGIWIFDLTSGDMAPIPITVRQDAKLTPVRVQTYTRDVQELALSPDGKKIA 310
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
+ G FA + + + D G++ R++ ++ S SPD + +V+ S R
Sbjct: 311 FIVRGKIFADFADKEN----ERDPRQGLAY--RVSQTAFRDSDVSWSPDSRSLVYVSDRH 364
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + +Y D G RLT GP + +SPDG WIA+A SG E+ LI
Sbjct: 365 GDEEVYRYDFPG---RSETRLTYGPKRKSAPCFSPDGRWIAYA-------SGDDEIRLID 414
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
R I++ A+ + SPD + + F +
Sbjct: 415 VVSGADRGFIRAHFVFGASFSW-SPDSRWLAFCA 447
>gi|392944376|ref|ZP_10310018.1| serine/threonine protein kinase [Frankia sp. QA3]
gi|392287670|gb|EIV93694.1| serine/threonine protein kinase [Frankia sp. QA3]
Length = 754
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 51/248 (20%)
Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
R+ VVY S + + D+ +V G+ + L T N+ P+++ D K +VF
Sbjct: 468 RDTVVYAS------NRTGNYDLFRGDVTGDGGLQNDKPLVTGPDNDMLPAIAADRKTVVF 521
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS------DTMCNWSPDGEWIAFASDRDNP 581
+ G N A G G + T GP + D + SPD ++ S D
Sbjct: 522 --FKKGSPNTLQAIAADGTGKPVQLFTSGPAAKLTIAGDARPSLSPDSPFLVVRSTTDET 579
Query: 582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG--------ISA 633
G+ + +Y++ +G+ +R+L + +A P +SPDG+ I + S+ G IS
Sbjct: 580 GNPNPGLYVVRLDGSSVRRL---KTKPQATDPAWSPDGERIAYWSNTAGGDRGFIVTISV 636
Query: 634 EPISTPHQ-------------YQPYG-------------EIFKIKLDGSDLKRLTQNSFE 667
EP + + P G EIF++ DGSD+++LT
Sbjct: 637 EPDAVAQPVINDKLTTDSDPVWSPTGDRIAFTREQNGDLEIFEMNSDGSDVRQLTHAHGN 696
Query: 668 DGTPAWGP 675
D PA+GP
Sbjct: 697 DQDPAFGP 704
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 439 PGVYVVNSDGSNRRQVYFK-NAFSTVWDPVREAVVY---TSGGPEFASESSEVDIISINV 494
PG+YVV DGS+ R++ K A W P E + Y T+GG + + IS+
Sbjct: 584 PGLYVVRLDGSSVRRLKTKPQATDPAWSPDGERIAYWSNTAGG-----DRGFIVTISVEP 638
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
D V +LTT+ P SP G I F + G ++ M+++G + + +LT
Sbjct: 639 DAVAQPVINDKLTTDSD----PVWSPTGDRIAFTREQNGDLEIFEMNSDGSD---VRQLT 691
Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLRKLIQSG 605
+D + PDG I F+ RD + +++++ N G R+L G
Sbjct: 692 HAHGNDQDPAFGPDGR-IVFSGQRDPANPAARQLFVLDSNNPTAGARQLTTLG 743
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 65/201 (32%)
Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF----------- 423
P +SPDS + +T E GN P P + + R DGS
Sbjct: 561 PSLSPDSPFLVVRS----TTDETGN----------PNPGLYVVRLDGSSVRRLKTKPQAT 606
Query: 424 -PSFSPKGDRIAFVEFPGVYVVNSDGSNR-------------RQVYFKNAFST----VWD 465
P++SP G+RIA Y N+ G +R Q + +T VW
Sbjct: 607 DPAWSPDGERIA-------YWSNTAGGDRGFIVTISVEPDAVAQPVINDKLTTDSDPVWS 659
Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525
P + + +T ++ +++I +N D D VR+LT N+ P+ PDG+ I
Sbjct: 660 PTGDRIAFTR------EQNGDLEIFEMNSDGSD----VRQLTHAHGNDQDPAFGPDGR-I 708
Query: 526 VFRSTRT----GYKNLYIMDA 542
VF R + L+++D+
Sbjct: 709 VFSGQRDPANPAARQLFVLDS 729
>gi|254455821|ref|ZP_05069250.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082823|gb|EDZ60249.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus
Pelagibacter sp. HTCC7211]
Length = 447
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 119/260 (45%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P F+P + ++ + P VY+++ + + V + F+ + P + ++ +
Sbjct: 214 PRFNPTSQMVTYLSYFKNLPRVYLLDIETGTQEVVGDFPGMTFAPRFSPDGKKIIMS--- 270
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
FA + DI ++++++ V R+T + + PS SP+GK+I F S R+GY+ +
Sbjct: 271 --FAKDGKS-DIFTMDLEN----RIVERITNHPSIDTSPSYSPNGKFIAFNSDRSGYQQI 323
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM +G + + R++ G WSP G+ IAF + G F + ++ +GTG
Sbjct: 324 YIMKNDGSD---VKRISFGNGIYGTPVWSPRGDLIAFTKLHN----GKFYIGVMRTDGTG 376
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L ++ P +SP+G+ ++F + + GE F KL D
Sbjct: 377 ERLLTENYY---QEAPSWSPNGRVLIFYRE------------TKTNAKGEGFSAKLWSID 421
Query: 658 L----KRLTQNSFEDGTPAW 673
L +RL + P+W
Sbjct: 422 LTGYNERLVTTPTDASDPSW 441
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 33/181 (18%)
Query: 506 LTTNGKNNAF----------PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555
+ +G NN F P +P + + + S +Y++D E G + +
Sbjct: 194 MDQDGANNKFLTLGNELVLTPRFNPTSQMVTYLSYFKNLPRVYLLDIETGTQ---EVVGD 250
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +SPDG+ I + +D G +++ + + ++ S + P +
Sbjct: 251 FPGMTFAPRFSPDGKKIIMSFAKD----GKSDIFTMDLENRIVERITNHPSIDTS--PSY 304
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP+GK I F SD G Y +I+ +K DGSD+KR++ + GTP W P
Sbjct: 305 SPNGKFIAFNSDRSG--------------YQQIYIMKNDGSDVKRISFGNGIYGTPVWSP 350
Query: 676 R 676
R
Sbjct: 351 R 351
>gi|374314037|ref|YP_005060466.1| translocation protein TolB [Serratia symbiotica str. 'Cinara
cedri']
gi|363988263|gb|AEW44454.1| translocation protein TolB [Serratia symbiotica str. 'Cinara
cedri']
Length = 430
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 443 VVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
V + DG N+ V+ + S VW P + Y + F S SE+ + +++ ++
Sbjct: 184 VADYDGYNQFTVHLSPEPLMSPVWSPDGNKIAYVT----FESGHSELVVQTLSNGEI--- 236
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
R++ + ++N P+ SPDG + F +++G NLY+MD G + ++T+ ++
Sbjct: 237 ---RQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMDFSSGN---ISQITDSRSNN 290
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
T W PDG+ +A+ SD+ G ++Y I +G ++L GS+ + + F DGK
Sbjct: 291 TEPTWFPDGQTLAYTSDQ----GGRPQIYKISASGGVSQRLTWEGSSNQNSKVSF--DGK 344
Query: 621 SIVFTSDYGGI 631
+V G+
Sbjct: 345 FLVMVQSNNGV 355
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 40/287 (13%)
Query: 341 RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400
+ S+ H EL + + + T +SP+ ++P SPD +++ Y T E G++
Sbjct: 172 KSNSAKMHYELRVADYDGYNQFTVHLSPEPL-MSPVWSPDGNKIAY------VTFESGHS 224
Query: 401 QLLLENIKS-PLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVY 455
+L+++ + + + I+ F P+FSP G R+AF +YV++ N Q+
Sbjct: 225 ELVVQTLSNGEIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMDFSSGNISQIT 284
Query: 456 FKNAFST--VWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
+ +T W P + + YTS G P+ S+ GVS +RLT G
Sbjct: 285 DSRSNNTEPTWFPDGQTLAYTSDQGGRPQIYKISAS-----------GGVS--QRLTWEG 331
Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
+N VS DGK++V + G +++ D + G ++ D + SP+G
Sbjct: 332 SSNQNSKVSFDGKFLVMVQSNNGVQHIAKQDLQS----GFVQVLTDTLIDETPSISPNGN 387
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
I +++ + G GS +Y++ N G + + G+ P +SP
Sbjct: 388 MIIYSAMQ---GMGSV-LYVVSSN--GFFNSLLPATNGQVKSPAWSP 428
>gi|196019748|ref|XP_002119033.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens]
gi|190577229|gb|EDV18481.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens]
Length = 251
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 42/259 (16%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P F K RI F+ + + N +VY + + D + + T P F+ +
Sbjct: 21 PRFDMKSQRITFMSY-------KNKKNPPKVYVLDLETGEQDLIGDMAGMTFA-PNFSPD 72
Query: 484 SSEVDIISI------NVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYK 535
++ V ++S+ N+ ++D + +++ TN G + PS SPDGK I+F S R G +
Sbjct: 73 NNHV-VMSLAKKGTTNIYEIDLNTKIKKELTNIYGFIDTSPSYSPDGKKILFNSDRGGRR 131
Query: 536 -NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y+MD +G + +++ G S WSPDG+WIAF G+F + ++ P+
Sbjct: 132 TQIYVMDRDG---QNIKKISSGEGSYRTPIWSPDGKWIAFTKIL----LGNFYIGIMKPD 184
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+ R L S+ P ++P+ ++I+F + +I+ I +D
Sbjct: 185 GSDERLLT---SSWLEEGPSWAPNSRTIIFGR-------------QKRDGSNKIYAIDID 228
Query: 655 GSDLKRLTQNSFEDGTPAW 673
G++ +R+ + P+W
Sbjct: 229 GNN-ERIIYTPTDGSQPSW 246
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 528 RSTRTGYKN------LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581
R T YKN +Y++D E GE + + ++ N+SPD + + +
Sbjct: 29 RITFMSYKNKKNPPKVYVLDLETGEQDLIGDMAGMTFA---PNFSPDNNHVVMSLAK--- 82
Query: 582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
G+ +Y I N T ++K + + P +SPDGK I+F SD GG +
Sbjct: 83 -KGTTNIYEIDLN-TKIKKELTNIYGFIDTSPSYSPDGKKILFNSDRGGRRTQ------- 133
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I+ + DG ++K+++ TP W P
Sbjct: 134 ------IYVMDRDGQNIKKISSGEGSYRTPIWSP 161
>gi|416954569|ref|ZP_11935716.1| translocation protein TolB [Burkholderia sp. TJI49]
gi|325522835|gb|EGD01305.1| translocation protein TolB [Burkholderia sp. TJI49]
Length = 431
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGG 477
PS+SP G ++A+V F P VY+ + +R V + N + W P +
Sbjct: 201 PSWSPSGTKVAYVSFERKKPIVYIHDLPTGHRYIVSDQKGNNSAPAWSPDGNTLAVA--- 257
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S + I ++N +RRLT + + P SPDG+WI F S R G +
Sbjct: 258 ---LSLTGNTQIYTVNSTG----GGLRRLTQSSSIDTEPYYSPDGRWIYFTSDRGGAPQI 310
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y M A+G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 311 YRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT----GGGFKLYV------- 359
Query: 598 LRKLIQSGSA------GRANHPYFSPDGKSIVFTSDYGG 630
+ +Q+G+A R P F+ +G+ I++ + GG
Sbjct: 360 --QDLQTGAANAITNTNRDESPSFAANGQYILYATQSGG 396
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 564 NWSPDGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
+WSP G +A+ S +R P + IH TG R ++ S G + P +SPDG ++
Sbjct: 202 SWSPSGTKVAYVSFERKKP------IVYIHDLPTGHRYIV-SDQKGNNSAPAWSPDGNTL 254
Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + +I+ + G L+RLTQ+S D P + P
Sbjct: 255 AVALSLTGNT--------------QIYTVNSTGGGLRRLTQSSSIDTEPYYSP 293
>gi|85710724|ref|ZP_01041788.1| translocation protein TolB precursor [Erythrobacter sp. NAP1]
gi|85687902|gb|EAQ27907.1| translocation protein TolB precursor [Erythrobacter sp. NAP1]
Length = 473
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 119/267 (44%), Gaps = 50/267 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSG 476
P +SP +I ++ + P +YV + GS ++ + +N T+ W P ++Y+
Sbjct: 247 PRYSPDYSKILYLSYVDGNPRIYVYDI-GSGQQTLVTENQNPTLAPRWSPDGRHILYS-- 303
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + DI + V G S RLT + S SPDG+ IVF S R+G +
Sbjct: 304 ----MAVAGNTDIYRVPV--TGGRS--ERLTDTPGIDIGGSYSPDGRRIVFESDRSGTQQ 355
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y+MDA+G R+T WSP G+ IAF +G F + ++ P+G
Sbjct: 356 CYVMDADGSN---QRRITFFGGRCATPEWSPRGDQIAFTRI-----AGDFNVAVMTPSGG 407
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF---TSDYGGISAEPISTPHQYQPYGEIFKIKL 653
LR L + + P ++P+G+ I F T D G S ++++ L
Sbjct: 408 SLRVLT---NGWQDEAPTWAPNGRIIQFFRTTRDAGRSS---------------LWQVDL 449
Query: 654 DGSDLKRLTQNSFEDGTPAWGPRFIRP 680
G + +RL + PAWGP IRP
Sbjct: 450 TGRNERRL-PTPVDASDPAWGP--IRP 473
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 85/229 (37%), Gaps = 66/229 (28%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE- 546
+ + V D DG A R T G A P SPD I++ S G +Y+ D G+
Sbjct: 221 VKRLAVMDSDG--ANHRFLTLGSATALTPRYSPDYSKILYLSYVDGNPRIYVYDIGSGQQ 278
Query: 547 ----------------------------------------GYGLHRLTEGPWSDTMCNWS 566
G RLT+ P D ++S
Sbjct: 279 TLVTENQNPTLAPRWSPDGRHILYSMAVAGNTDIYRVPVTGGRSERLTDTPGIDIGGSYS 338
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG I F SDR SG+ + Y++ +G+ R++ G GR P +SP G I FT
Sbjct: 339 PDGRRIVFESDR----SGTQQCYVMDADGSNQRRITFFG--GRCATPEWSPRGDQIAFTR 392
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + + TP G L+ LT N ++D P W P
Sbjct: 393 IAGDFNVA-VMTPS--------------GGSLRVLT-NGWQDEAPTWAP 425
>gi|386813121|ref|ZP_10100346.1| putative peptidase [planctomycete KSU-1]
gi|386405391|dbj|GAB63227.1| putative peptidase [planctomycete KSU-1]
Length = 1002
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 38/206 (18%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTR---TGYKNLYIMDAEGGEGYGLHRLTEGPWS 559
+++LT GK+ S DGK+++F+S R + +YI+ E GE HR++ G
Sbjct: 40 IQQLTKQGKSAGEGYFSQDGKFLIFQSEREPGNPFYQIYILSFETGE---THRVSSGAGK 96
Query: 560 DTMCNWSPDGEWIAFASDRDNPGSGS------------------------FEMYLIHPNG 595
T + P+ E + FAS + + + ++++ +G
Sbjct: 97 TTCSFFRPNSEEVLFASTHLDSQAEAKQQAEIEFRSSGKKRRFTWDYDEHYDIFSAQRDG 156
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ------PYGEIF 649
+ L++L + + G +SPDG IVF S E +S+ Q + +GEI+
Sbjct: 157 SALKRL--TDAPGYDAEGAYSPDGSKIVFCSLRDAYPVEKLSSKDQKRFETNPAYFGEIY 214
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DGSD KRLT DG P + P
Sbjct: 215 LMNADGSDQKRLTDWPGYDGGPFFSP 240
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 38/172 (22%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-----------------NPGSGSFEM 588
+G L RLT+ P D +SPDG I F S RD NP E+
Sbjct: 155 DGSALKRLTDAPGYDAEGAYSPDGSKIVFCSLRDAYPVEKLSSKDQKRFETNPAYFG-EI 213
Query: 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS-DYGGISAEPISTPHQYQPYGE 647
YL++ +G+ ++L + G P+FSPDGK I++ + G+ A +
Sbjct: 214 YLMNADGSDQKRL--TDWPGYDGGPFFSPDGKRIIWRHFNENGMLA-------------D 258
Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWL 699
++ ++LDGSD++RLT G+ +W P + + + + F +C
Sbjct: 259 VYTMRLDGSDIQRLTNF----GSMSWAPYYHPSGEYIVFHSNKYGFANCELF 306
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 43/198 (21%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY--------------------KNLYIM 540
SA++RLT +A + SPDG IVF S R Y +Y+M
Sbjct: 157 SALKRLTDAPGYDAEGAYSPDGSKIVFCSLRDAYPVEKLSSKDQKRFETNPAYFGEIYLM 216
Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600
+A+G + RLT+ P D +SPDG+ I + +N ++Y + +G+ +++
Sbjct: 217 NADGSD---QKRLTDWPGYDGGPFFSPDGKRIIWRHFNENGMLA--DVYTMRLDGSDIQR 271
Query: 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--- 657
L GS A PY+ P G+ IVF S+ G + E+F + + G
Sbjct: 272 LTNFGSMSWA--PYYHPSGEYIVFHSNKYGFAN------------CELFIVDVHGEKEPV 317
Query: 658 LKRLTQNSFEDGTPAWGP 675
T N F DG P + P
Sbjct: 318 RVTFTHNVF-DGLPVFSP 334
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV---------- 487
F +Y++N+DGS+++++ T W GGP F+ + +
Sbjct: 210 FGEIYLMNADGSDQKRL-------TDWPGY-------DGGPFFSPDGKRIIWRHFNENGM 255
Query: 488 --DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAE 543
D+ ++ +D D ++RLT G + P P G++IVF S + G+ N L+I+D
Sbjct: 256 LADVYTMRLDGSD----IQRLTNFGSMSWAPYYHPSGEYIVFHSNKYGFANCELFIVDVH 311
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G + T + D + +SPDG+ + + S R +P +G +++L N +Q
Sbjct: 312 GEKEPVRVTFTHNVF-DGLPVFSPDGKHLVWTSAR-SP-AGESQLFLADWNHDAALAALQ 368
Query: 604 SGSAGRANHP 613
S A + P
Sbjct: 369 SACAQIQSQP 378
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 35/204 (17%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASES 484
++SP G +I F Y V S ++ + N P + E
Sbjct: 173 AYSPDGSKIVFCSLRDAYPVEKLSSKDQKRFETN-------------------PAYFGE- 212
Query: 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR--STRTGYKNLYIMDA 542
I +N D D +RLT + P SPDGK I++R + ++Y M
Sbjct: 213 ----IYLMNADGSD----QKRLTDWPGYDGGPFFSPDGKRIIWRHFNENGMLADVYTMRL 264
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
+G + + RLT + P GE+I F S++ G + E++++ +G +
Sbjct: 265 DGSD---IQRLTNFGSMSWAPYYHPSGEYIVFHSNK--YGFANCELFIVDVHGEKEPVRV 319
Query: 603 QSGSAGRANHPYFSPDGKSIVFTS 626
P FSPDGK +V+TS
Sbjct: 320 TFTHNVFDGLPVFSPDGKHLVWTS 343
>gi|33603212|ref|NP_890772.1| translocation protein TolB [Bordetella bronchiseptica RB50]
gi|410421694|ref|YP_006902143.1| TolB-like translocation protein [Bordetella bronchiseptica MO149]
gi|410474321|ref|YP_006897602.1| TolB-like translocation protein [Bordetella parapertussis Bpp5]
gi|412341458|ref|YP_006970213.1| TolB-like translocation protein [Bordetella bronchiseptica 253]
gi|427816222|ref|ZP_18983286.1| putative TolB-like translocation protein [Bordetella bronchiseptica
1289]
gi|427819736|ref|ZP_18986799.1| putative TolB-like translocation protein [Bordetella bronchiseptica
D445]
gi|427825265|ref|ZP_18992327.1| putative TolB-like translocation protein [Bordetella bronchiseptica
Bbr77]
gi|67462004|sp|Q7WFN4.1|TOLB_BORBR RecName: Full=Protein TolB; Flags: Precursor
gi|33568843|emb|CAE34601.1| putative TolB-like translocation protein [Bordetella bronchiseptica
RB50]
gi|408444431|emb|CCJ51177.1| putative TolB-like translocation protein [Bordetella parapertussis
Bpp5]
gi|408448989|emb|CCJ60675.1| putative TolB-like translocation protein [Bordetella bronchiseptica
MO149]
gi|408771292|emb|CCJ56092.1| putative TolB-like translocation protein [Bordetella bronchiseptica
253]
gi|410567222|emb|CCN24793.1| putative TolB-like translocation protein [Bordetella bronchiseptica
1289]
gi|410570736|emb|CCN18933.1| putative TolB-like translocation protein [Bordetella bronchiseptica
D445]
gi|410590530|emb|CCN05621.1| putative TolB-like translocation protein [Bordetella bronchiseptica
Bbr77]
Length = 441
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 132/305 (43%), Gaps = 52/305 (17%)
Query: 381 SSRVGYHKCRGGSTRE----DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
S+R+ Y RG ST E D + Q ++S P IS PS+SP G R+A+V
Sbjct: 176 STRIAYVLKRG-STYELQVADADGQNPQVALRSREPIIS--------PSWSPDGSRLAYV 226
Query: 437 EF----PGVYVVNSDGSNRRQVY-FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490
F P VYV S R V FK N + W P G + A + +
Sbjct: 227 SFESGKPVVYVHTLATSARIPVANFKGNNSAPAWSP---------DGSQLAVALTRDGLS 277
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
I + G S +RR+T + + P+ +PDG+ I+F S R+G +Y +GG+
Sbjct: 278 QIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQIYQTGLDGGDA--- 334
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
RLT + SPDG + + + RD G+F + ++ + +G L+ G ++
Sbjct: 335 RRLTFNGGYNISPRISPDGSTLLYVARRD----GAFRIASLNLS-SGSETLLTDGRDDQS 389
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P F+P+G +++ + G S + + DG + L+ + E
Sbjct: 390 --PSFAPNGMQVLYAAIQNGRSV--------------LAGVSSDGRVRQTLSVLNGEIRE 433
Query: 671 PAWGP 675
P WGP
Sbjct: 434 PTWGP 438
>gi|86158652|ref|YP_465437.1| hypothetical protein Adeh_2230 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775163|gb|ABC82000.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 1042
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 107/274 (39%), Gaps = 69/274 (25%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P FSP+GDR+AF Q Y F
Sbjct: 88 PDFSPRGDRVAF-----------------QAYAGGTFH---------------------- 108
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMD 541
I ++ D D VR+LT+ ++ P SPDG I F S R G +++++D
Sbjct: 109 -----IWTMRPDGTD----VRQLTSGHGDDREPRFSPDGTRIAFSSDRAFEGSYDVWVVD 159
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
G L R TE P + W+PDG IAF S G+GS + + TG R+
Sbjct: 160 VASG---ALTRWTEAPADEFEPAWTPDGGEIAFVS-----GAGSTGTAIEAVDSTGARRT 211
Query: 602 IQSGSAG-RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660
+ + AG R N P SPDG + + + + + P+ ++F +
Sbjct: 212 LATAPAGARLNSPSISPDGAHLAWIQ-FAANRSRLVVDGAPASPFEDVFPFPAHWLSART 270
Query: 661 LTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFE 694
L ++ DG IR D++ +EQ AF+
Sbjct: 271 LLYSA--DGG-------IRVTDLDAGTSEQVAFQ 295
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
+AVR +T + N + SPDG+ +V L+ + GGE RLT+G
Sbjct: 33 AAVRDITVHEGTNVAVTASPDGRDLVMDLQGV----LWSLPRGGGEA---RRLTDGLLEP 85
Query: 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
++SP G+ +AF + G+F ++ + P+GT +R+L + G P FSPDG
Sbjct: 86 ARPDFSPRGDRVAFQAY----AGGTFHIWTMRPDGTDVRQL--TSGHGDDREPRFSPDGT 139
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
I F+SD ++ +++ + + L R T+ ++ PAW P
Sbjct: 140 RIAFSSD------------RAFEGSYDVWVVDVASGALTRWTEAPADEFEPAWTP 182
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 52/341 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
+V S ++ R T F PA +P + V+ T + + V + T
Sbjct: 157 VVDVASGALTRWTEAPADEFEPAWTPDGGEIAFVSGAGSTGT-----AIEAVDSTGARRT 211
Query: 364 RFVSPKTHHLN-PFISPDSSRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISLFRFDG 421
+P LN P ISPD + + + + +R L+++ SP D+
Sbjct: 212 LATAPAGARLNSPSISPDGAHLAWIQFAANRSR------LVVDGAPASPFEDVF------ 259
Query: 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTV---WD---------PVRE 469
FP+ + + G+ V + D QV F+ F V WD R+
Sbjct: 260 PFPAHWLSARTLLYSADGGIRVTDLDAGTSEQVAFQATFRLVRPAWDRKRFDFDRTAPRQ 319
Query: 470 AVVYTSGGPEFASESSEVDIISIN---VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526
A+ + P + + + V ++N + DV G A R LT P+ S DG I
Sbjct: 320 ALGIVA--PALSPDGTRVVFQALNRLWLMDVGG--APRPLTDGPYYAQDPAWSRDGTRIA 375
Query: 527 FRSTRTGYKNLYIMD-AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
+ S + G +LY++D A G E R+T P ++ WSPDG +AF +D G+
Sbjct: 376 YASDKAGTADLYVLDVATGAE----QRVTSLPGAEVAPAWSPDGGRLAF---QDQAGA-- 426
Query: 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
+++ +R+++ A P +S DG+++ +
Sbjct: 427 --THVLDLASGAVRQIVAPLFA--PGRPTWSADGRTVALAA 463
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW 558
G RRLT A P SP G + F++ G +++ M +G + + +LT G
Sbjct: 71 GGGEARRLTDGLLEPARPDFSPRGDRVAFQAYAGGTFHIWTMRPDGTD---VRQLTSGHG 127
Query: 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
D +SPDG IAF+SDR GS++++++ L + ++ + P ++PD
Sbjct: 128 DDREPRFSPDGTRIAFSSDRAF--EGSYDVWVVDVASGALTRWTEAPA--DEFEPAWTPD 183
Query: 619 GKSIVFTSDYG 629
G I F S G
Sbjct: 184 GGEIAFVSGAG 194
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 67/190 (35%), Gaps = 38/190 (20%)
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDIS 415
E R P SP RV + GG+ R DG + L +
Sbjct: 74 EARRLTDGLLEPARPDFSPRGDRVAFQAYAGGTFHIWTMRPDGTDVRQLTSGHG------ 127
Query: 416 LFRFDGSFPSFSPKGDRIAFVE---FPG---VYVVN--SDGSNRRQVYFKNAFSTVWDPV 467
D P FSP G RIAF F G V+VV+ S R + F W P
Sbjct: 128 ----DDREPRFSPDGTRIAFSSDRAFEGSYDVWVVDVASGALTRWTEAPADEFEPAWTPD 183
Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGKNNAFPSVSPDG--- 522
+ + SG + ++ VD A R L T G PS+SPDG
Sbjct: 184 GGEIAFVSGAGSTGTA----------IEAVDSTGARRTLATAPAGARLNSPSISPDGAHL 233
Query: 523 KWIVFRSTRT 532
WI F + R+
Sbjct: 234 AWIQFAANRS 243
>gi|440227749|ref|YP_007334840.1| translocation protein TolB [Rhizobium tropici CIAT 899]
gi|440039260|gb|AGB72294.1| translocation protein TolB [Rhizobium tropici CIAT 899]
Length = 434
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG + F S R G +Y+M+A+G R++ G S + WSP G+ IAF
Sbjct: 295 PSYSPDGTQVAFESDRGGQPQIYVMNADGSN---QRRISFGNGSYSTPVWSPRGDLIAFT 351
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
G+F + ++ P+G+G R ++ SGS + P ++P+G+ I+F G S
Sbjct: 352 KR----AGGNFSIGVMKPDGSGER-ILTSGS--YSEGPTWAPNGRVIMFFRAPSGASGP- 403
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+I+ I L G + +++ F PAW P
Sbjct: 404 -----------QIYSIDLTGYNEQKIPTPGFAS-DPAWSP 431
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 32/207 (15%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
V GP+ A ++ + + D DG +A R+ T+G + P SP+ + + + S
Sbjct: 169 VFVAESGPKTARKTQ------LGIMDQDGANA--RMLTDGSDLVLTPRFSPNRQEVTYMS 220
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ + G+ + P +SPDG+ + + ++ G+ +Y
Sbjct: 221 FANQQPRVYLLQLQTGQ---RELVGNFPGMTFSPRFSPDGQRVIMSLQQE----GNANIY 273
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ + + +A P +SPDG + F SD GG QP +I+
Sbjct: 274 TM--DLRSRTTTRLTSTAAIDTSPSYSPDGTQVAFESDRGG------------QP--QIY 317
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+ DGS+ +R++ + TP W PR
Sbjct: 318 VMNADGSNQRRISFGNGSYSTPVWSPR 344
>gi|354598495|ref|ZP_09016512.1| Protein tolB [Brenneria sp. EniD312]
gi|353676430|gb|EHD22463.1| Protein tolB [Brenneria sp. EniD312]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPFELRVADYDGHNQFVVHRSPEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A+R++ + ++N PS SPDG + F +++G NLY+M+
Sbjct: 222 GRSALVVQTL------ANGAIRQIASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T +W PD + +A+ SD+ +G ++Y + NG ++L
Sbjct: 276 GSGQ---ISQVTDGRSNNTEPSWFPDNQTLAYTSDQ----AGRPQVYKTNVNGGSPQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + + S DGK +V S G+ I K L ++ LT
Sbjct: 329 WEGAQNQDSE--VSADGKFLVMVSSNAGVQ--------------HIAKQDLVTGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSIAP 384
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F PSFSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAIRQIASFPRHNGAPSFSPDGS 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV+N QV + +T W P + + YTS ++
Sbjct: 257 KLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPSWFPDNQTLAYTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ NV+ + +RLT G N VS DGK++V S+ G +++ D G
Sbjct: 311 RPQVYKTNVNG----GSPQRLTWEGAQNQDSEVSADGKFLVMVSSNAGVQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQVLTD-TFLDETPSIAPNGTMVIYSSKQ---GLGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|157803974|ref|YP_001492523.1| translocation protein TolB [Rickettsia canadensis str. McKiel]
gi|166229988|sp|A8EZF5.1|TOLB_RICCK RecName: Full=Protein TolB; Flags: Precursor
gi|157785237|gb|ABV73738.1| hypothetical protein A1E_04055 [Rickettsia canadensis str. McKiel]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P F+ D+I +V + + RR + ++ T + + S P F+ +
Sbjct: 203 PRFARSVDKIFYVSY---------ATKRRALIYEKDLKTGKESIVSDFAGISFAPRFSPD 253
Query: 484 SSEVDIISI------NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++SI ++ ++D + +LT N PS SPDGK IV+ S R G
Sbjct: 254 GRKA-VMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQ 312
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRDNPGSGSFEMYLIHP-- 593
LYIM+++G + R++ G S +WSP G++IAF R GS +F + ++
Sbjct: 313 LYIMNSDGSN---VKRISFGGGSYAAPSWSPRGDYIAFTKITRGEDGSKTFNIGIMKAYP 369
Query: 594 -NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
+ ++I SG P +SP+G+ I+F +
Sbjct: 370 QDDENSERIITSGYL--VESPCWSPNGRVIMFAKGW 403
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG + ++ GS +Y I L KL + G P +SPDGK IV+
Sbjct: 250 FSPDGRKAVMSIAKN----GSTHIYEIDLATKQLHKL--TDGFGINTSPSYSPDGKKIVY 303
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD G+ +++ + DGS++KR++ P+W PR
Sbjct: 304 NSDRNGVP--------------QLYIMNSDGSNVKRISFGGGSYAAPSWSPR 341
>gi|387889948|ref|YP_006320246.1| tol-Pal system beta propeller repeat protein TolB [Escherichia
blattae DSM 4481]
gi|386924781|gb|AFJ47735.1| tol-Pal system beta propeller repeat protein TolB [Escherichia
blattae DSM 4481]
Length = 431
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 167 RIAYVVQNKGGQFPYELRVSDYDGYNQFVVHRSSQPLMSPAWSPDGSKLAYVT----FES 222
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 223 GRSALVVQTLSN------GAVRQIASFPQHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 276
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 277 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIS 329
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGK +V S G I K L ++ L+
Sbjct: 330 WEGN--QNQDADVSTDGKFMVMVSSANGAQ--------------HIAKQDLAAGGVQVLS 373
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 374 -STFLDETPSLAP 385
>gi|148560006|ref|YP_001259549.1| translocation protein TolB [Brucella ovis ATCC 25840]
gi|166229975|sp|A5VS52.1|TOLB_BRUO2 RecName: Full=Protein TolB; Flags: Precursor
gi|148371263|gb|ABQ61242.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ovis
ATCC 25840]
Length = 443
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNWQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNWQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
>gi|319762343|ref|YP_004126280.1| tol-pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans BC]
gi|330825736|ref|YP_004389039.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Alicycliphilus denitrificans K601]
gi|317116904|gb|ADU99392.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans BC]
gi|329311108|gb|AEB85523.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans K601]
Length = 440
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G ++V ++DG N + + S W P G + A S
Sbjct: 177 RIAYVTKVGARYSLWVADADGENAQSALSSPEPIISPAWSP---------SGAQLAYVSF 227
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV + RRL N + +N+ P+ SPDG+ + +R G LY +DA G
Sbjct: 228 ESRKPVVYVHDV--ATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANG 285
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR GS ++Y + G ++ +
Sbjct: 286 GEP---RRLMQSSGIDTEPAFSSDGRSIYFVSDR----GGSPQIYRVAAGGGNAERVTFN 338
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630
G+ + P SPDG+ + + S GG
Sbjct: 339 GAYNIS--PAISPDGQWLAYISRVGG 362
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 26/186 (13%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
S+ V D DG +A L++ + P+ SP G + + S + +Y+ D G
Sbjct: 189 SLWVADADGENAQSALSSP-EPIISPAWSPSGAQLAYVSFESRKPVVYVHDVATGR---- 243
Query: 551 HRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RL S++ WSPDG +A RD G ++Y I NG R+L+QS +G
Sbjct: 244 RRLIANFRGSNSAPAWSPDGRTLAVTLSRD----GGSQLYTIDANGGEPRRLMQS--SGI 297
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
P FS DG+SI F SD GG +P +I+++ G + +R+T N +
Sbjct: 298 DTEPAFSSDGRSIYFVSDRGG-------SP-------QIYRVAAGGGNAERVTFNGAYNI 343
Query: 670 TPAWGP 675
+PA P
Sbjct: 344 SPAISP 349
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 52/222 (23%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRR 452
D + + + SP P IS P++SP G ++A+V F P VYV + RR
Sbjct: 194 DADGENAQSALSSPEPIIS--------PAWSPSGAQLAYVSFESRKPVVYVHDVATGRRR 245
Query: 453 QVY-FKNAFST-VWDPVREAVVYT--------------SGG--------------PEFAS 482
+ F+ + S W P + T +GG P F+S
Sbjct: 246 LIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDTEPAFSS 305
Query: 483 ESSEVDIISINVDD------VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ + +S G R+T NG N P++SPDG+W+ + S G
Sbjct: 306 DGRSIYFVSDRGGSPQIYRVAAGGGNAERVTFNGAYNISPAISPDGQWLAYISRVGGAFK 365
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
L++MD G + LT+ +D +++P+ I +A+ +
Sbjct: 366 LHVMDLRSGS---VTALTDSS-ADESPSFAPNSRLILYATQQ 403
>gi|410028177|ref|ZP_11278013.1| Tol biopolymer transport system, periplasmic component-related
protein [Marinilabilia sp. AK2]
Length = 1077
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 489 IISINVDDVDGVSA----VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I+ ++ +D+ VS RLT+N P SPDGK I F + G ++Y++ EG
Sbjct: 35 IVFVHANDLWRVSKNGGDAIRLTSNEGAENLPHFSPDGKHIAFTAQYDGNTDVYVIPVEG 94
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RLT P +D + W+PDG+++ F S R+N + + + I P G+ + +
Sbjct: 95 GEP---KRLTWHPGADLVSGWTPDGKYVLFTSARENVPTKESKFFRI-PVTGGMEEAL-- 148
Query: 605 GSAGRANHPYFSPDGKSIVFTS---------DYGGISAEPISTPHQYQPYGEIFKIKLD- 654
RA + S DGK I + +Y G A+PI E F++K+
Sbjct: 149 -PIPRAVNGRISDDGKHIAYQQIAFWDPEWRNYRGGQAKPIWVVDL-----ETFELKMTP 202
Query: 655 GSDLKRLTQ 663
+D++R TQ
Sbjct: 203 QTDMERHTQ 211
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
+++ + NG +L + + G N P+FSPDGK I FT+ Y G +
Sbjct: 42 DLWRVSKNGGDAIRL--TSNEGAENLPHFSPDGKHIAFTAQYDGNT-------------- 85
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I ++G + KRLT + D W P
Sbjct: 86 DVYVIPVEGGEPKRLTWHPGADLVSGWTP 114
>gi|221068062|ref|ZP_03544167.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas
testosteroni KF-1]
gi|220713085|gb|EED68453.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas
testosteroni KF-1]
Length = 417
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G +++ ++DG N + + S W P G + A S
Sbjct: 154 RIAYVTKAGAQYRLWIADADGENAQSALSSPEPIISPAWAP---------NGTQLAYVSF 204
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV S RRL N + +N+ P+ SPDG + +R G LY++ A+G
Sbjct: 205 ESRKPVVYVHDV--ASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGGSQLYLLSAQG 262
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR G+ ++Y + +G ++ S
Sbjct: 263 GE---PRRLMQSSGIDTEPCFSSDGRTIYFVSDR----GGAPQVYKVSSSGGSAERVTFS 315
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G+ + P SPDGK + + S GG KL DL T N
Sbjct: 316 GTYNIS--PAISPDGKWLAYVSRVGG-------------------GFKLQVMDLATGTVN 354
Query: 665 SFEDGTPAWGPRF 677
S D T P F
Sbjct: 355 SVTDTTADESPSF 367
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 82/208 (39%), Gaps = 51/208 (24%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + + + SP P IS P+++P G ++A+V
Sbjct: 152 STRIAYVTKAGAQYRLWIADADGENAQSALSSPEPIIS--------PAWAPNGTQLAYVS 203
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYT-------------SG 476
F P VYV + +RR + F+ + S W P R AV + G
Sbjct: 204 FESRKPVVYVHDVASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGGSQLYLLSAQGG 263
Query: 477 GPEFASESSEVDI---------ISINVDDVDGVSAV----------RRLTTNGKNNAFPS 517
P +SS +D V D G V R+T +G N P+
Sbjct: 264 EPRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSSGGSAERVTFSGTYNISPA 323
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+SPDGKW+ + S G L +MD G
Sbjct: 324 ISPDGKWLAYVSRVGGGFKLQVMDLATG 351
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
VY ++ +G R L + ++ +PA SP G AV + G + +Y+ +
Sbjct: 211 VYVHDVASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGG---------SQLYLLSAQ 261
Query: 258 DGTQRVKIVENGGW---PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ 313
G R +++++ G PC+ D T++F S+ VYKV S+ S +
Sbjct: 262 GGEPR-RLMQSSGIDTEPCFSSDGRTIYF--VSDRGGAPQVYKV--------SSSGGSAE 310
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
RVT G + +PA SP + K++A +R +++ DL +T T
Sbjct: 311 RVTFSGTYNISPAISP-DGKWLAYVSR--VGGGFKLQVMDLATGTVNSVT----DTTADE 363
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411
+P +P+S + Y +GG RE L IK+ L
Sbjct: 364 SPSFAPNSRLIVYATIQGG--REALMTTTLDGKIKARL 399
>gi|414592384|ref|ZP_11442035.1| TolB protein [Escherichia blattae NBRC 105725]
gi|403196701|dbj|GAB79687.1| TolB protein [Escherichia blattae NBRC 105725]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQNKGGQFPYELRVSDYDGYNQFVVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTLSN------GAVRQIASFPQHNGAPAFSPDGTKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAAQRIS 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
G+ + S DGK +V S G I K L ++ L+
Sbjct: 329 WEGN--QNQDADVSTDGKFMVMVSSANGAQ--------------HIAKQDLAAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
>gi|395781285|ref|ZP_10461706.1| protein tolB [Bartonella rattimassiliensis 15908]
gi|395421504|gb|EJF87750.1| protein tolB [Bartonella rattimassiliensis 15908]
Length = 441
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576
S SPDGK IVF S R+G +Y M+A+G + + R++ S + WSP G++IAF
Sbjct: 302 SYSPDGKQIVFSSDRSGKPQIYKMNADGSD---IQRISSNEGSYSTPIWSPRGDYIAFTK 358
Query: 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEP 635
G F + ++HP+G G R L + G N P ++P+G+ ++F G+
Sbjct: 359 QL----GGQFSIGVMHPDGQGERIL----TTGFHNEGPTWAPNGRVLMFFRKNPGMGP-- 408
Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
+I+ I + G + ++L T N D PAW P
Sbjct: 409 -----------KIYTIDITGRNERQLPTPNDASD--PAWSP 436
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 14/62 (22%)
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+SPDGK IVF+SD G +P +I+K+ DGSD++R++ N TP W
Sbjct: 303 YSPDGKQIVFSSDRSG------------KP--QIYKMNADGSDIQRISSNEGSYSTPIWS 348
Query: 675 PR 676
PR
Sbjct: 349 PR 350
>gi|406663646|ref|ZP_11071682.1| hypothetical protein B879_03716 [Cecembia lonarensis LW9]
gi|405552130|gb|EKB47680.1| hypothetical protein B879_03716 [Cecembia lonarensis LW9]
Length = 1077
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 489 IISINVDDVDGVSA----VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
I+ ++ +D+ VS RLT+N P SPDGK I F + G ++Y++ EG
Sbjct: 35 IVFVHANDLWRVSKNGGDAIRLTSNEGAENLPHFSPDGKHIAFTAQYDGNTDVYVIPVEG 94
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RLT P +D + W+PDG+++ F S R+N + + + I P G+ + +
Sbjct: 95 GEP---KRLTWHPGADLVTGWTPDGKYVLFTSARENVPTKESKFFRI-PVTGGMEEAL-- 148
Query: 605 GSAGRANHPYFSPDGKSIVFTS---------DYGGISAEPISTPHQYQPYGEIFKIKLD- 654
RA + S DGK I + +Y G A+PI E F++K+
Sbjct: 149 -PIPRAVNGRISDDGKHIAYQQIAFWDPEWRNYRGGQAKPIWVVDL-----ETFELKMTP 202
Query: 655 GSDLKRLTQ 663
+D++R TQ
Sbjct: 203 QTDMERHTQ 211
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 85/209 (40%), Gaps = 26/209 (12%)
Query: 425 SFSPKGDRIAFVEFPGVYVV----NSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
S SP G R A E+ G + D N + VW P + + + F
Sbjct: 310 SLSPTGQR-ALFEYRGEIITVPKEKGDARNLTNTSRVAERAPVWSPDGQQIAW------F 362
Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGKWIVFRSTRTGYKNLY 538
+ S E ++ + D +G+ R +T KN F P SPDGK I F T T Y NL+
Sbjct: 363 SDASGEYQLM---IGDQEGLKPARTITLP-KNTFFFKPDWSPDGKHIAF--TDTDY-NLW 415
Query: 539 IMD-AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
I++ A G P WSPD +W+A+A DN F+ + TG
Sbjct: 416 IVNVATGTSKIADTDRFAHPNRSLNPIWSPDSKWVAYARLLDN----QFKAIFTYHVETG 471
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
+ I G A A P + +G + F +
Sbjct: 472 KKIQITDGMAD-AITPVWDQNGAYLYFLA 499
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
+++ + NG +L + + G N P+FSPDGK I FT+ Y G +
Sbjct: 42 DLWRVSKNGGDAIRL--TSNEGAENLPHFSPDGKHIAFTAQYDGNT-------------- 85
Query: 647 EIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+++ I ++G + KRLT + D W P
Sbjct: 86 DVYVIPVEGGEPKRLTWHPGADLVTGWTP 114
>gi|33594232|ref|NP_881876.1| translocation protein TolB [Bordetella pertussis Tohama I]
gi|384205532|ref|YP_005591271.1| translocation protein TolB [Bordetella pertussis CS]
gi|408417336|ref|YP_006628043.1| TolB-like translocation protein [Bordetella pertussis 18323]
gi|67462002|sp|Q7VU03.1|TOLB_BORPE RecName: Full=Protein TolB; Flags: Precursor
gi|33564307|emb|CAE43608.1| putative TolB-like translocation protein [Bordetella pertussis
Tohama I]
gi|332383646|gb|AEE68493.1| translocation protein TolB [Bordetella pertussis CS]
gi|401779506|emb|CCJ65034.1| putative TolB-like translocation protein [Bordetella pertussis
18323]
Length = 438
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 132/305 (43%), Gaps = 52/305 (17%)
Query: 381 SSRVGYHKCRGGSTRE----DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
S+R+ Y RG ST E D + Q ++S P IS PS+SP G R+A+V
Sbjct: 173 STRIAYVLKRG-STYELQVADADGQNPQVALRSREPIIS--------PSWSPDGSRLAYV 223
Query: 437 EF----PGVYVVNSDGSNRRQVY-FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490
F P VYV S R V FK N + W P G + A + +
Sbjct: 224 SFESGKPVVYVHTLATSARIPVANFKGNNSAPAWSP---------DGSQLAVALTRDGLS 274
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
I + G S +RR+T + + P+ +PDG+ I+F S R+G +Y +GG+
Sbjct: 275 QIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQIYQTGLDGGDA--- 331
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
RLT + SPDG + + + RD G+F + ++ + +G L+ G ++
Sbjct: 332 RRLTFNGGYNISPRISPDGSTLLYVARRD----GAFRIASLNLS-SGSETLLTDGRDDQS 386
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P F+P+G +++ + G S + + DG + L+ + E
Sbjct: 387 --PSFAPNGMQVLYAAIQNGRSV--------------LAGVSSDGRVRQTLSVLNGEIRE 430
Query: 671 PAWGP 675
P WGP
Sbjct: 431 PTWGP 435
>gi|319899382|ref|YP_004159479.1| TolB protein [Bartonella clarridgeiae 73]
gi|319403350|emb|CBI76909.1| TolB protein [Bartonella clarridgeiae 73]
Length = 440
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV-YFKN-AFSTVWDPVREAVVYTSG 476
P FSPK I ++ + P VY+ + R + F N + + P + V+ +
Sbjct: 210 PRFSPKRQEITYMAYGKNKTPHVYLQQMEVGQRELIGTFDNMTIAPRFSPDGQKVIMS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ ++ ++++ + RLTT + S SPDG IVF S R G
Sbjct: 268 ---LLQNNGSANLYTMDLR----TRKMTRLTTTKAIDTSASYSPDGNKIVFSSDRDGKPQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y M+ +G + L R++ S + WSP G++IAF G F + +++P+G
Sbjct: 321 IYTMNVDGSD---LQRISSNEGSYSTPIWSPRGDYIAFTKQF----QGQFSIGVMYPDGK 373
Query: 597 GLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
G R L + G N P ++P+G+ ++F G A +I+ I + G
Sbjct: 374 GERIL----TTGFHNEGPTWAPNGRVLMFFRKNPGAGA-------------KIYTIDITG 416
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+ +RL + PAW P
Sbjct: 417 RN-ERLLPTPNDASDPAWSP 435
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 19/112 (16%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG+ + + ++N GS +Y + + +L + + + +SPDG IVF
Sbjct: 257 FSPDGQKVIMSLLQNN---GSANLYTMDLRTRKMTRLTTTKAIDTSAS--YSPDGNKIVF 311
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
+SD G +P +I+ + +DGSDL+R++ N TP W PR
Sbjct: 312 SSDRDG------------KP--QIYTMNVDGSDLQRISSNEGSYSTPIWSPR 349
>gi|297568868|ref|YP_003690212.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus
AHT2]
gi|296924783|gb|ADH85593.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus
AHT2]
Length = 431
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 43/287 (14%)
Query: 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402
+ ++ I L D++ + ++TR H +SP +R G H R GN L
Sbjct: 172 ATGHKEIHLADILGDNVRQVTR-------HQYLAVSPRFTRDGEHLTYTSHHR--GNANL 222
Query: 403 LLENIKSPLPDISLFRFDG--SFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF 456
NI+ ++ R+ G P+++P +R+ P +Y+ G R++
Sbjct: 223 YQTNIRELKTTRAISRWVGLNMTPTWAPDDNRMVLTLSRDGNPDLYLTERTGKIIRRL-- 280
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516
T + V + ++ G A S I + D+ + A++RLT G +N P
Sbjct: 281 -----THGEGVNVSPSFSPDGRRLAFVSDRSGTPQIYLMDMRTM-AIQRLTFQGHDNTTP 334
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGG------EGYGLHRLTEGPWSDTMCNWSPDGE 570
S SPDGKWI + S G ++ ++ EGG +G H E P +WSPD
Sbjct: 335 SWSPDGKWIAYTSRIDGVLHIAVISPEGGPPRQVTRTWGHH---ESP------SWSPDSR 385
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ FA R + E+ I +G+GLR L S G + P +SP
Sbjct: 386 QLVFARLRHD----REELCAIFLDGSGLRVLFGDQS-GNHSMPQWSP 427
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 40/270 (14%)
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFASESS 485
+IAFV +++ + G N RQV A S + E + YTS
Sbjct: 165 KIAFVSDATGHKEIHLADILGDNVRQVTRHQYLAVSPRFTRDGEHLTYTS------HHRG 218
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
++ N+ ++ A+ R N P+ +PD +V +R G +LY+ + G
Sbjct: 219 NANLYQTNIRELKTTRAISRWV---GLNMTPTWAPDDNRMVLTLSRDGNPDLYLTERTGK 275
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ RLT G + ++SPDG +AF SDR SG+ ++YL+ +++L G
Sbjct: 276 I---IRRLTHGEGVNVSPSFSPDGRRLAFVSDR----SGTPQIYLMDMRTMAIQRLTFQG 328
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
P +SPDGK I +TS G+ + +P +G +++T+
Sbjct: 329 HDNTT--PSWSPDGKWIAYTSRIDGVLHIAVISP--------------EGGPPRQVTRTW 372
Query: 666 FEDGTPAWGP--RFIRPVDVEEVKNEQCAF 693
+P+W P R + + + E CA
Sbjct: 373 GHHESPSWSPDSRQLVFARLRHDREELCAI 402
>gi|350273365|ref|YP_004884678.1| translocation protein tolB [Rickettsia japonica YH]
gi|348592578|dbj|BAK96539.1| translocation protein tolB precursor [Rickettsia japonica YH]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 46/288 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT-PAW 673
+ + P +IF I L G + + + + ED + P W
Sbjct: 402 GWPSRAKAPGKN--------KIFAIDLTGHNEREIM--TPEDASDPEW 439
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|149922524|ref|ZP_01910955.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis
pacifica SIR-1]
gi|149816632|gb|EDM76126.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis
pacifica SIR-1]
Length = 418
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
+V RLT + + N P++SPDG+ + F S+R G LY M A+GG RLT P D+
Sbjct: 195 SVLRLTGDEQGNFEPALSPDGERVAFVSSRDGDAELYTMTADGG---APTRLTTSPGDDS 251
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANHPYFSPDGK 620
WS DG+ +AF S RD ++++I G + L+ + A SPDG
Sbjct: 252 APRWSADGQTLAFVSARDL--DRGMDVFVIPAAGGEAKALLPARDAPVLVRDLSVSPDGT 309
Query: 621 SIVFTSDYGGISA 633
+ FT G A
Sbjct: 310 KLAFTELSQGAGA 322
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMD--AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
PS P G+++VF S +++LY ++ + GG+ + RLT + SPDGE +A
Sbjct: 160 PSRDPAGRFLVFESDANSFRDLYRLELSSNGGDAPSVLRLTGDEQGNFEPALSPDGERVA 219
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
F S RD G E+Y + +G +L S G + P +S DG+++ F S
Sbjct: 220 FVSSRD----GDAELYTMTADGGAPTRLTT--SPGDDSAPRWSADGQTLAFVS 266
>gi|157828282|ref|YP_001494524.1| translocation protein TolB [Rickettsia rickettsii str. 'Sheila
Smith']
gi|378721087|ref|YP_005285974.1| translocation protein TolB [Rickettsia rickettsii str. Colombia]
gi|379016650|ref|YP_005292885.1| translocation protein TolB [Rickettsia rickettsii str. Brazil]
gi|166229989|sp|A8GRJ1.1|TOLB_RICRS RecName: Full=Protein TolB; Flags: Precursor
gi|157800763|gb|ABV76016.1| translocation protein TolB precursor [Rickettsia rickettsii str.
'Sheila Smith']
gi|376325174|gb|AFB22414.1| translocation protein TolB [Rickettsia rickettsii str. Brazil]
gi|376326111|gb|AFB23350.1| translocation protein TolB [Rickettsia rickettsii str. Colombia]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDG IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGTKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITKGDGGKTFNIGIMKACPQDNKNSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+ S P +IF I L G + +R + P W
Sbjct: 402 GWPSSSKAPGKN--------KIFAIDLTGHN-EREIMTPADASDPEW 439
Score = 42.4 bits (98), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDG IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGTKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|157369522|ref|YP_001477511.1| translocation protein TolB [Serratia proteamaculans 568]
gi|166988079|sp|A8GB93.1|TOLB_SERP5 RecName: Full=Protein TolB; Flags: Precursor
gi|157321286|gb|ABV40383.1| Tol-Pal system beta propeller repeat TolB [Serratia proteamaculans
568]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGKFPYELRVADYDGYNQFTVHRSPEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A+R++ + ++N P+ SPDG + F +++G NLY+M+
Sbjct: 222 GRSALVVQTL------ANGAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PDG+ +A+ SD+ G ++Y + +G ++L
Sbjct: 276 GSGQ---ITQITDGRSNNTEPTWFPDGQSLAYTSDQ----GGRPQIYKVSASGGASQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + S DGK +V S G I K L ++ LT
Sbjct: 329 WEGSQNQDSE--VSSDGKFLVMVSSNSGAQ--------------HIAKQDLGSGAVQVLT 372
Query: 663 QNSFEDGTPAWGP 675
+F D TP+ P
Sbjct: 373 -GTFLDETPSIAP 384
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAIRQIASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
R+AF +YV+N Q+ + +T W P +++ YTS +
Sbjct: 257 RLAFALSKSGSLNLYVMNLGSGQITQITDGRSNNTEPTWFPDGQSLAYTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
I ++ A +RLT G N VS DGK++V S+ +G +++ D
Sbjct: 311 RPQIYKVSASG----GASQRLTWEGSQNQDSEVSSDGKFLVMVSSNSGAQHIAKQDL--- 363
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G G ++ G + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 364 -GSGAVQVLTGTFLDETPSIAPNGTMVIYSSTQ---GMGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|440712332|ref|ZP_20892953.1| peptidase M28 [Rhodopirellula baltica SWK14]
gi|436442853|gb|ELP35946.1| peptidase M28 [Rhodopirellula baltica SWK14]
Length = 1048
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 45/224 (20%)
Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR---TGYKNLYIMDAEGGEG 547
++ D+ D +S VR+LT G+ S DG +VF+S R + +Y+ D E G+
Sbjct: 36 AVAQDESDLLSNVRKLTFEGRRAGEGYFSADGTRMVFQSERDPSNPFYQIYVSDLETGD- 94
Query: 548 YGLHRLTEGPWSDTMCNW-SPDGEWIAFAS-------------DRDNPGSG--------- 584
+ R++ G + T C W P+GE + FAS + D SG
Sbjct: 95 --IQRVSPG-FGKTTCGWIHPNGEKVLFASTHADANSERLQKEELDFRASGESRRYSWDY 151
Query: 585 --SFEMYL-----IHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPI 636
++E+Y+ I P T GL L + + G +SPDGK IVF S+ S E
Sbjct: 152 DPNYELYVAELDQIEPGTTKGLTAL--TSAMGYDAEASYSPDGKQIVFASNRAAYSRELT 209
Query: 637 STPHQYQPYGEIFKIKL-----DGSDLKRLTQNSFEDGTPAWGP 675
+ F I L DGS++KRLT DG P + P
Sbjct: 210 EREREQFERDPAFMIDLYIMNADGSNVKRLTNEPGYDGGPFFSP 253
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 39/190 (20%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-------------------NLYIMDAEGGE 546
LT+ +A S SPDGK IVF S R Y +LYIM+A+G
Sbjct: 176 LTSAMGYDAEASYSPDGKQIVFASNRAAYSRELTEREREQFERDPAFMIDLYIMNADGSN 235
Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
+ RLT P D +SPDG+ I + R P + E++ + +G+ +++L + +
Sbjct: 236 ---VKRLTNEPGYDGGPFFSPDGQRICWR--RFAPNGATAEIFTMKTDGSDVQRLTEINA 290
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS-DLKRLTQNS 665
A P++ P G+ +VFT++ H + + E++ ++ DG + RLT
Sbjct: 291 MSWA--PFYHPSGEFLVFTTN-----------KHGFANF-ELYLVRADGEGEPVRLTTTE 336
Query: 666 FEDGTPAWGP 675
DG P + P
Sbjct: 337 GFDGLPVFLP 346
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 38/148 (25%)
Query: 537 LYIMDA---EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR--------------- 578
LY+ + E G GL LT D ++SPDG+ I FAS+R
Sbjct: 157 LYVAELDQIEPGTTKGLTALTSAMGYDAEASYSPDGKQIVFASNRAAYSRELTEREREQF 216
Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
+ + ++Y+++ +G+ +++L + G P+FSPDG+ I +
Sbjct: 217 ERDPAFMIDLYIMNADGSNVKRL--TNEPGYDGGPFFSPDGQRICW-------------- 260
Query: 639 PHQYQPYG---EIFKIKLDGSDLKRLTQ 663
++ P G EIF +K DGSD++RLT+
Sbjct: 261 -RRFAPNGATAEIFTMKTDGSDVQRLTE 287
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 441 VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498
+Y++N+DGSN +++ + + + P + + + FA + +I ++ D D
Sbjct: 226 LYIMNADGSNVKRLTNEPGYDGGPFFSPDGQRICWR----RFAPNGATAEIFTMKTDGSD 281
Query: 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRLTEG 556
V+RLT + P P G+++VF + + G+ N LY++ A+ GEG + RLT
Sbjct: 282 ----VQRLTEINAMSWAPFYHPSGEFLVFTTNKHGFANFELYLVRAD-GEGEPV-RLTTT 335
Query: 557 PWSDTMCNWSPDGEWIAFASDR 578
D + + P+G +++ + R
Sbjct: 336 EGFDGLPVFLPNGNQLSWTTTR 357
>gi|67458884|ref|YP_246508.1| translocation protein TolB [Rickettsia felis URRWXCal2]
gi|75536675|sp|Q4UM77.1|TOLB_RICFE RecName: Full=Protein TolB; Flags: Precursor
gi|67004417|gb|AAY61343.1| TolB protein precursor [Rickettsia felis URRWXCal2]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 43/275 (15%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRALVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFSGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S T +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYTAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGAEGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + P +IF I L G + + +
Sbjct: 402 GWPSRAKAP--------GKNKIFAIDLTGHNEREI 428
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
+SPDG + ++ GS +Y I L KL + G P +SPDGK IV+
Sbjct: 251 FSPDGRKAVMSIAKN----GSTHIYEIDLATKRLHKL--TDGFGINTSPSYSPDGKKIVY 304
Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
SD G+ +++ + DGSD++R++ P+W PR
Sbjct: 305 NSDRNGVP--------------QLYIMNSDGSDVQRISFGGGSYTAPSWSPR 342
>gi|336123897|ref|YP_004565945.1| TolB [Vibrio anguillarum 775]
gi|335341620|gb|AEH32903.1| TolB [Vibrio anguillarum 775]
Length = 450
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 30/174 (17%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
+ V D DG + RL K P+ SPDGK + + S + G ++IM+ GE
Sbjct: 202 LRVADYDGYN--ERLVLRSKQPLMSPTWSPDGKQLAYVSFQNGQAEIFIMNIYTGER--- 256
Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
++T P + +SPDG+ +A + +GS ++Y + L+++ ++GR+
Sbjct: 257 EKVTSYPRHNGAPRFSPDGKTLALVLSK----TGSLQVYTLDLATKKLKQI----TSGRS 308
Query: 611 NH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
N+ P++ PDGKS++FTSD GG +P +I+++ L RLT
Sbjct: 309 NNTEPFWHPDGKSLIFTSDRGG---KP-----------QIYQVNLSDGSTNRLT 348
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 39/217 (17%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
++P SPD ++ Y + ++G ++ + NI + + S R +G+ P FSP G
Sbjct: 223 MSPTWSPDGKQLAY------VSFQNGQAEIFIMNIYTGEREKVTSYPRHNGA-PRFSPDG 275
Query: 431 DRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
+A V VY ++ +Q+ + +T W P +++++TS G P+
Sbjct: 276 KTLALVLSKTGSLQVYTLDLATKKLKQITSGRSNNTEPFWHPDGKSLIFTSDRGGKPQ-- 333
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
I +N+ D + RLT G N ++PDG+++V + NL D
Sbjct: 334 -------IYQVNLSD----GSTNRLTWQGSQNLGGQITPDGRFLVMVNRSNSGFNLAKQD 382
Query: 542 AEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFAS 576
E G L + L E P + +P+G + ++S
Sbjct: 383 LETGSVQILTKTLLDESP------SIAPNGGMVIYSS 413
>gi|433543655|ref|ZP_20500056.1| peptidase [Brevibacillus agri BAB-2500]
gi|432185040|gb|ELK42540.1| peptidase [Brevibacillus agri BAB-2500]
Length = 672
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 40/265 (15%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDG--NNQLLLENIKSPLP-DISLFRFDGSFPSFSPKG 430
+P +SPD V Y + S E+ N L + + + P ++ ++P +SP G
Sbjct: 19 DPQLSPDGRTVVYVET---SIDEEHAYRNHLYVRELAAAEPRALTTGAVRDTYPRWSPDG 75
Query: 431 DRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
+++FV V+++++ G RQ+ F A ++ +W P + +++ G F
Sbjct: 76 SQLSFVSKRSGTSQVWLMDATGGEPRQLTFCKAGASTPIWSPDGRYIAFSALLDRGETFH 135
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
E + + V V R+ ++ + ++ TR L ++D
Sbjct: 136 DREGEGEKKAT----APKVIHVERMKYKSDDHGY----------LYEKTR----QLALVD 177
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-DNPG-SGSFEMYLIHPNGTGLR 599
+ GE + LT+GP+ T+ +WSPDG+W+A ++R +NP S ++YLI G +
Sbjct: 178 VQSGE---ITALTDGPYHHTVGSWSPDGQWLAITANRTENPDMQHSLDVYLIPIAGGEWK 234
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
KL + S G +P +S DGK + +
Sbjct: 235 KL--TSSNGTFFYPTWSADGKKLAY 257
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 516 PSVSPDGKWIVFRST----RTGYKN-LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
P +SPDG+ +V+ T Y+N LY+ + E LT G DT WSPDG
Sbjct: 20 PQLSPDGRTVVYVETSIDEEHAYRNHLYVRELAAAEP---RALTTGAVRDTYPRWSPDGS 76
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++F S R SG+ +++L+ G R+L + A+ P +SPDG+ I F++
Sbjct: 77 QLSFVSKR----SGTSQVWLMDATGGEPRQLTFCKAG--ASTPIWSPDGRYIAFSA 126
>gi|399051653|ref|ZP_10741461.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Brevibacillus
sp. CF112]
gi|398050581|gb|EJL42941.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Brevibacillus
sp. CF112]
Length = 672
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 40/265 (15%)
Query: 374 NPFISPDSSRVGYHKCRGGSTREDG--NNQLLLENIKSPLP-DISLFRFDGSFPSFSPKG 430
+P +SPD V Y + S E+ N L + + + P ++ ++P +SP G
Sbjct: 19 DPQLSPDGRTVVYVET---SIDEEHAYRNHLYVRELAAAEPRALTTGAVRDTYPRWSPDG 75
Query: 431 DRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
+++FV V+++++ G RQ+ F A ++ +W P + +++ G F
Sbjct: 76 SQLSFVSKRSGTSQVWLMDATGGEPRQLTFCKAGASTPIWSPDGRYIAFSALLDRGETFH 135
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
E + + V V R+ ++ + ++ TR L ++D
Sbjct: 136 DREGEGEKKAT----APKVIHVERMKYKSDDHGY----------LYEKTR----QLALVD 177
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR-DNPG-SGSFEMYLIHPNGTGLR 599
+ GE + LT+GP+ T+ +WSPDG+W+A ++R +NP S ++YLI G +
Sbjct: 178 VQSGE---ITALTDGPYHHTVGSWSPDGQWLAITANRTENPDMQHSLDVYLIPIAGGEWK 234
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVF 624
KL + S G +P +S DGK + +
Sbjct: 235 KL--TSSNGTFFYPTWSADGKKLAY 257
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 516 PSVSPDGKWIVFRST----RTGYKN-LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
P +SPDG+ +V+ T Y+N LY+ + E LT G DT WSPDG
Sbjct: 20 PQLSPDGRTVVYVETSIDEEHAYRNHLYVRELAAAEP---RALTTGAVRDTYPRWSPDGS 76
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++F S R SG+ +++L+ G R+L + A+ P +SPDG+ I F++
Sbjct: 77 QLSFVSKR----SGTSQVWLMDATGGEPRQLTFCKAG--ASTPIWSPDGRYIAFSA 126
>gi|418530944|ref|ZP_13096864.1| translocation protein TolB [Comamonas testosteroni ATCC 11996]
gi|371452023|gb|EHN65055.1| translocation protein TolB [Comamonas testosteroni ATCC 11996]
Length = 417
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G +++ ++DG N + + S W P G + A S
Sbjct: 154 RIAYVTKAGAHYRLWIADADGENAQSALSSPEPIISPAWAP---------NGTQLAYVSF 204
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
E + V DV S RRL N + +N+ P+ SPDG + +R G LY++ A+G
Sbjct: 205 ESRKPVVYVHDV--ASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGGSQLYLLSAQG 262
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GE RL + DT +S DG I F SDR G+ ++Y + +G ++ S
Sbjct: 263 GE---PRRLMQSSGIDTEPCFSSDGRTIYFVSDR----GGAPQVYKVSSSGGSAERVTFS 315
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
G+ + P SPDGK + + S GG KL DL T N
Sbjct: 316 GTYNIS--PAISPDGKWLAYVSRVGG-------------------GFKLQVMDLATGTVN 354
Query: 665 SFEDGTPAWGPRF 677
S D T P F
Sbjct: 355 SVTDTTADESPSF 367
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 127/306 (41%), Gaps = 55/306 (17%)
Query: 381 SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
S+R+ Y G R D + + + SP P IS P+++P G ++A+V
Sbjct: 152 STRIAYVTKAGAHYRLWIADADGENAQSALSSPEPIIS--------PAWAPNGTQLAYVS 203
Query: 438 F----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDI 489
F P VYV + +RR + F+ + S W P R AV + G S++ +
Sbjct: 204 FESRKPVVYVHDVASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDG------GSQLYL 257
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+S + RRL + + P S DG+ I F S R G +Y + + GG
Sbjct: 258 LSAQGGE------PRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSSGGSA-- 309
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R+T + SPDG+W+A+ S G F++ ++ TG + +A
Sbjct: 310 -ERVTFSGTYNISPAISPDGKWLAYVSRV----GGGFKLQVMDL-ATGTVNSVTDTTADE 363
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
+ P F+P+ + IV+ + GG A + LDG RL S +
Sbjct: 364 S--PSFAPNSRLIVYATIQGGREA--------------LMTTTLDGKIKARLAGASGDIR 407
Query: 670 TPAWGP 675
P WGP
Sbjct: 408 EPDWGP 413
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
VY ++ +G R L + ++ +PA SP G AV + G + +Y+ +
Sbjct: 211 VYVHDVASGHRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGG---------SQLYLLSAQ 261
Query: 258 DGTQRVKIVENGGW---PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ 313
G R +++++ G PC+ D T++F S+ VYKV S+ S +
Sbjct: 262 GGEPR-RLMQSSGIDTEPCFSSDGRTIYF--VSDRGGAPQVYKV--------SSSGGSAE 310
Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
RVT G + +PA SP + K++A +R +++ DL +T T
Sbjct: 311 RVTFSGTYNISPAISP-DGKWLAYVSR--VGGGFKLQVMDLATGTVNSVT----DTTADE 363
Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS 415
+P +P+S + Y +GG RE L IK+ L S
Sbjct: 364 SPSFAPNSRLIVYATIQGG--REALMTTTLDGKIKARLAGAS 403
>gi|284035677|ref|YP_003385607.1| amidohydrolase [Spirosoma linguale DSM 74]
gi|283814970|gb|ADB36808.1| amidohydrolase [Spirosoma linguale DSM 74]
Length = 1005
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
PS SPDG+ I F S G +++ + A GG+ +LT G + D +WSPDG+ + FA
Sbjct: 86 PSWSPDGQRIAFHSFWDGRYHIWTVSATGGKP---QQLTNGIYDDREPHWSPDGKQLVFA 142
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
SDR SG+++++ ++ L +L + +G +P +SP+GK I + SD
Sbjct: 143 SDR----SGNYDIWQLNLADGKLTQL--TNGSGNEFNPAYSPNGKQIAYISD 188
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 30/175 (17%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
++R T G N A +SPD + IV T ++++ A GG L P D
Sbjct: 33 SIRVTVTEGTNMA-ADLSPDKRQIVIDLQGT----IWLLPATGGVAKPL----TDPLGDC 83
Query: 562 -MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
+WSPDG+ IAF S D G + ++ + G ++L R P++SPDGK
Sbjct: 84 RQPSWSPDGQRIAFHSFWD----GRYHIWTVSATGGKPQQLTNGIYDDR--EPHWSPDGK 137
Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+VF SD G Y +I+++ L L +LT S + PA+ P
Sbjct: 138 QLVFASDRSG----------NY----DIWQLNLADGKLTQLTNGSGNEFNPAYSP 178
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
++LT ++ P SPDGK +VF S R+G +++ ++ G+ L +LT G ++
Sbjct: 118 QQLTNGIYDDREPHWSPDGKQLVFASDRSGNYDIWQLNLADGK---LTQLTNGSGNEFNP 174
Query: 564 NWSPDGEWIAFASDR-DNPGSGSFEMYLIHPNGTGLRKLI---QSGSAGRANHPYFSPDG 619
+SP+G+ IA+ SDR D PG +Y++ GT KL+ S AG + H PDG
Sbjct: 175 AYSPNGKQIAYISDRTDAPG-----VYILPLGGT--EKLVAPTMSKLAGVSWH----PDG 223
Query: 620 KSIVF 624
+ +
Sbjct: 224 SQLFY 228
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGG 477
PS+SP G RIAF F ++ V++ G +Q+ + W P + +V+ S
Sbjct: 86 PSWSPDGQRIAFHSFWDGRYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFAS-- 143
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAF-PSVSPDGKWIVFRSTRTGY 534
S DI +N+ D +LT TNG N F P+ SP+GK I + S RT
Sbjct: 144 ----DRSGNYDIWQLNLAD-------GKLTQLTNGSGNEFNPAYSPNGKQIAYISDRTDA 192
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAF 574
+YI+ G E +L S +W PDG + +
Sbjct: 193 PGVYILPLGGTE-----KLVAPTMSKLAGVSWHPDGSQLFY 228
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTEGPWSDTMCNWSPDGEWIAFA 575
S+SPDGK I F +L+++ +G + RLT+G + WSPDG + +
Sbjct: 327 SISPDGKQIAF----AALGDLWLLT----KGNKVPQRLTQGKAMEVEPGWSPDGSKLTYV 378
Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
SDR+ G+ +++ I TG +L+ S ++P +SPDG I F
Sbjct: 379 SDRN----GNMDVW-IRDLKTGQDRLLADMS-DDLHYPTWSPDGSKIAF 421
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
+RLT P SPDG + + S R G +++I D + G+ L +++ T
Sbjct: 354 QRLTQGKAMEVEPGWSPDGSKLTYVSDRNGNMDVWIRDLKTGQDRLLADMSDDLHYPT-- 411
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG------LRKLIQSGSAGRANHPYFSP 617
WSPDG IAF G +Y+ T RKL +S + +SP
Sbjct: 412 -WSPDGSKIAFYQSDPRNAWGRSTLYVADVTYTADVTAPKTRKLHESLFV--PSQASWSP 468
Query: 618 DGKSIVFTS 626
DGK++ ++
Sbjct: 469 DGKTLAVSA 477
>gi|187479385|ref|YP_787410.1| translocation protein TolB [Bordetella avium 197N]
gi|119371036|sp|Q2KV91.1|TOLB_BORA1 RecName: Full=Protein TolB; Flags: Precursor
gi|115423972|emb|CAJ50525.1| TolB protein [Bordetella avium 197N]
Length = 441
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 45/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV----YFKNAFSTVWDPVREAVVYTS 475
P++SP G ++A+V F P VYV + R Q+ + N + W P
Sbjct: 214 PTWSPDGSKLAYVSFHSGKPVVYVQTL--ATRSQIPVANFKGNNSAPAWSP--------- 262
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G + A ++ + I + DG + RR+T + + P+ +PDG+ I+F S R+G
Sbjct: 263 DGSQLAVALTQDGLSQIYIVSADGSAKPRRITRSPGIDTEPTFTPDGRSIIFTSDRSGGP 322
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH-PN 594
+Y + +GG+ RLT + SPDG + + + RD G+F + ++ P
Sbjct: 323 QIYQVGLDGGDA---RRLTFNGSYNISPRISPDGSTLLYVARRD----GAFRIASLNLPT 375
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
GT L+ G ++ P F+P+G +++ + G S + + D
Sbjct: 376 GT--ETLLTDGRDDQS--PSFAPNGMQVLYAATQNGRSV--------------LAGVSSD 417
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G + L+ + E P WGP
Sbjct: 418 GRVRQTLSVLNGEIREPTWGP 438
>gi|239832783|ref|ZP_04681112.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum
intermedium LMG 3301]
gi|239825050|gb|EEQ96618.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum
intermedium LMG 3301]
Length = 475
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ + P VY++ + R V + + + P + VV +
Sbjct: 247 PRFSPNRQEVTYMSYEGGTPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 303
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + + RLT + + S SPDG IVF S R G L
Sbjct: 304 --LLQDDGSANIYTMDLRN----RSTTRLTNSQAIDTGASYSPDGSQIVFTSDRGGRPQL 357
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + ++ +G+G
Sbjct: 358 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVMKTDGSG 410
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 411 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 454
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 455 NERQIQTPNFAS-DPAWSP 472
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES ++ + + + D DG + VR ++ + P SP+ + + + S G +
Sbjct: 210 FVDESGPAQKRVKRLAIMDQDGAN-VRYISDGRAISLTPRFSPNRQEVTYMSYEGGTPKV 268
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y++ E G+ + P +SPDG+ + + +D+ + + M L + + T
Sbjct: 269 YLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTR 325
Query: 598 L--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
L + I +G++ +SPDG IVFTSD GG +P +++ + DG
Sbjct: 326 LTNSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGADG 364
Query: 656 SDLKRLTQNSFEDGTPAWGPR 676
S+ +R++ TP W PR
Sbjct: 365 SNPRRISMGDGSYSTPVWSPR 385
>gi|383190995|ref|YP_005201123.1| tol-pal system beta propeller repeat protein TolB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
gi|371589253|gb|AEX52983.1| tol-pal system beta propeller repeat protein TolB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
Length = 430
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA++ +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYIVQTNGGKFPYELRVADYDGYNQFVVHRSPEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A++++ + ++N P+ SPDG + F ++ G NLY+M+
Sbjct: 222 GRSALVVQTL------ANGAIKQIASFPRHNGAPAFSPDGSKLAFALSKDGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T W PD + +AF SD+ G ++Y ++ NG ++L
Sbjct: 276 SSGQ---ISQVTNGRSNNTEPTWFPDSQNLAFTSDQ----GGRPQVYKVNVNGGAPQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + S DGK +V S G T H I K+ L ++ LT
Sbjct: 329 WEGSQNQDSD--VSTDGKFLVMVSSASG-------TQH-------IAKLDLATGAVQTLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAIKQIASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV+N QV + +T W P + + +TS +
Sbjct: 257 KLAFALSKDGSLNLYVMNLSSGQISQVTNGRSNNTEPTWFPDSQNLAFTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ A +RLT G N VS DGK++V S+ +G +++ +D G
Sbjct: 311 RPQVYKVNVNG----GAPQRLTWEGSQNQDSDVSTDGKFLVMVSSASGTQHIAKLDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQTLTD-TFLDETPSLAPNGTMVIYSSSQ---GLGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|256828400|ref|YP_003157128.1| WD40 domain-containing protein beta Propeller [Desulfomicrobium
baculatum DSM 4028]
gi|256577576|gb|ACU88712.1| WD40 domain protein beta Propeller [Desulfomicrobium baculatum DSM
4028]
Length = 439
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
+R++ GK N PS+SPDG +VF G L+++D G +LT GP SD
Sbjct: 334 KRISLTGKYNTGPSISPDGSQVVFAQMVNGNHKLFLVDLASGHE---RQLTFGPGSDEDP 390
Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
WSPDG +IAFAS+R SG ++YL +G
Sbjct: 391 TWSPDGYFIAFASNR----SGPSKIYLTTKHG 418
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562
VR L N + P G+ +VF S R G ++++ + G+ R++ +T
Sbjct: 289 VRPLEENWGIDIGPDFDRSGEKMVFVSNRLGNPHVFLKNMVTGQS---KRISLTGKYNTG 345
Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
+ SPDG + FA + G+ +++L+ R+L + G P +SPDG I
Sbjct: 346 PSISPDGSQVVFAQMVN----GNHKLFLVDLASGHERQL--TFGPGSDEDPTWSPDGYFI 399
Query: 623 VFTSDYGGISAEPISTPHQYQP 644
F S+ G S ++T H +P
Sbjct: 400 AFASNRSGPSKIYLTTKHGDEP 421
>gi|451942561|ref|YP_007463198.1| TolB protein [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901948|gb|AGF76410.1| TolB protein [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 441
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 115/268 (42%), Gaps = 58/268 (21%)
Query: 424 PSFSPKGDRIAFVEFPG-----VYVVNSDGSNRRQV-YFKNAFSTVWDPVREAVVYTSGG 477
P FSPK I ++ +P VY+ + R + F N +
Sbjct: 211 PRFSPKRQEITYMAYPHNQVPHVYLQQIERGQRELIGTFDNM---------------TIA 255
Query: 478 PEFASESSEVDIISINVDDVDG--------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
P F+S+ +V I+S+ +D + RLT + S SPDG IVF S
Sbjct: 256 PRFSSDGQKV-IMSLLQNDGSANLYTMDLRTRTMTRLTITSAIDTSASYSPDGTQIVFSS 314
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
R+G +Y M+A+G + R++ S + WSP G++IAF + G F +
Sbjct: 315 DRSGKPQIYTMNADGSN---VQRISSNEGSYSTPIWSPRGDYIAFTKQSE----GQFSIG 367
Query: 590 LIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
++ P+G G R L + G N P ++P+G+ ++F G+ ++
Sbjct: 368 VMRPDGQGERIL----TTGFHNEGPTWAPNGRVLMFFRKNPGMGP-------------KL 410
Query: 649 FKIKLDGSDLKRL-TQNSFEDGTPAWGP 675
+ I + G + +++ T N D PAW P
Sbjct: 411 YTIDITGRNERQVDTPNDASD--PAWSP 436
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 14/62 (22%)
Query: 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674
+SPDG IVF+SD G +P +I+ + DGS+++R++ N TP W
Sbjct: 303 YSPDGTQIVFSSDRSG------------KP--QIYTMNADGSNVQRISSNEGSYSTPIWS 348
Query: 675 PR 676
PR
Sbjct: 349 PR 350
>gi|320104230|ref|YP_004179821.1| WD40-like beta Propeller containing protein [Isosphaera pallida
ATCC 43644]
gi|319751512|gb|ADV63272.1| WD40-like beta Propeller containing protein [Isosphaera pallida
ATCC 43644]
Length = 327
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
+ E+ I+ + D S R+T + + P +PDG+ IVF + R G L I D E
Sbjct: 177 NQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQRIVFVTDRWGGLELAITDLE 236
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G + + RLT P D + SPDG WIAF + R+ G E++++ +G+ R L +
Sbjct: 237 G---HRVERLTRQPGIDDSPDVSPDGRWIAFTTFRE----GMAEVFVMGIDGSNPRNLSR 289
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGG 630
+ G HP ++PDG+ + F + G
Sbjct: 290 N-PEGHDMHPRWTPDGRGVTFCTQRQG 315
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIM---DAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
+ +P+ S DG +VF ST G + ++ + D HR+T P DT W+PD
Sbjct: 155 HQEWPNWSADGSKLVFASTHEGNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPD 214
Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
G+ I F +DR G E+ + G + +L + G + P SPDG+ I FT+
Sbjct: 215 GQRIVFVTDR----WGGLELAITDLEGHRVERLTR--QPGIDDSPDVSPDGRWIAFTTFR 268
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN-SFEDGTPAWGP 675
G++ E+F + +DGS+ + L++N D P W P
Sbjct: 269 EGMA--------------EVFVMGIDGSNPRNLSRNPEGHDMHPRWTP 302
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + + D++G V RLT + P VSPDG+WI F + R G +++M +G
Sbjct: 228 LELAITDLEG-HRVERLTRQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVMGIDGSNPRN 286
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
L R EG D W+PDG + F + R G +E+ +
Sbjct: 287 LSRNPEG--HDMHPRWTPDGRGVTFCTQR----QGRWELVTL 322
>gi|163845276|ref|YP_001622931.1| translocation protein TolB [Brucella suis ATCC 23445]
gi|189035980|sp|A9WWH3.1|TOLB_BRUSI RecName: Full=Protein TolB; Flags: Precursor
gi|163675999|gb|ABY40109.1| Tol-Pal system beta propeller repeat protein TolB [Brucella suis
ATCC 23445]
Length = 443
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 40/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++ F P VY++ + R V + + + P + VV +
Sbjct: 215 PRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFSPDGQKVVMS--- 271
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT++ + S SPDG IVF S R G L
Sbjct: 272 --LLQDDGSANIYTMDLRN----RTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGRPQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G R++ G S + WSP G+ IAF G F + + +G+G
Sbjct: 326 YVM---GADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQ----SQGQFSIGVTKTDGSG 378
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P ++P+G+ ++F G ++F I L G
Sbjct: 379 ERLL----TSGFHNEGPTWAPNGRVLMFFRKAAGAGGP------------KLFTIDLTGR 422
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ +F PAW P
Sbjct: 423 NERQIQTPNFAS-DPAWSP 440
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 480 FASES--SEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKN 536
F ES ++ + + + D DG + R ++G+ + P SP+ + + + S G
Sbjct: 178 FVDESGPAQKRVKRLAIMDQDGANV--RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPK 235
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y++ E G+ + P +SPDG+ + + +D+ + + M L + T
Sbjct: 236 VYLLQLETGQ---RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT 292
Query: 597 GL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
L + I +G++ +SPDG IVFTSD GG +P +++ + D
Sbjct: 293 RLTSSQAIDTGAS-------YSPDGSQIVFTSDRGG------------RP--QLYVMGAD 331
Query: 655 GSDLKRLTQNSFEDGTPAWGPR 676
GS+ +R++ TP W PR
Sbjct: 332 GSNPRRISMGDGSYSTPVWSPR 353
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 60/230 (26%)
Query: 364 RFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTR------EDGNNQLL-----LENIKSPL 411
RF+S + L P SP+ V Y GGS + E G +L+ +
Sbjct: 203 RFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVGNFPGMTIAPRFS 262
Query: 412 PD-----ISLFRFDGSF------------------------PSFSPKGDRIAFVE----F 438
PD +SL + DGS S+SP G +I F
Sbjct: 263 PDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQIVFTSDRGGR 322
Query: 439 PGVYVVNSDGSNRRQVYFKN-AFST-VWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496
P +YV+ +DGSN R++ + ++ST VW P + + +T S+ SI V
Sbjct: 323 PQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTK-----QSQGQ----FSIGVTK 373
Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF--RSTRTGYKNLYIMDAEG 544
DG RL T+G +N P+ +P+G+ ++F ++ G L+ +D G
Sbjct: 374 TDGSG--ERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 421
>gi|384566105|ref|ZP_10013209.1| periplasmic component of the Tol biopolymer transport system
[Saccharomonospora glauca K62]
gi|384521959|gb|EIE99154.1| periplasmic component of the Tol biopolymer transport system
[Saccharomonospora glauca K62]
Length = 1075
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
+G RLT+ A P V PDG+ I ++S G +++I DA+GG +LT G
Sbjct: 93 EGGGKAERLTSVEDEAAMPDVGPDGR-IAYQSYADGRFHIWITDADGGNPV---QLTHGG 148
Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
+ D WSPDG IAF+SDR G+++++ + L + ++ G+ P + P
Sbjct: 149 FDDREPRWSPDGTTIAFSSDR----GGTYDIWTVDVVTGELTR--RTDDPGQEYTPTWHP 202
Query: 618 DGKSIVFTSDYG 629
DG+S+ + D G
Sbjct: 203 DGRSLAYVGDEG 214
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 64/331 (19%)
Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRG-GSTREDGNNQLLLENIKSPLPDISLFRF 419
ELTR P PD + Y G DG + L+ P PD +
Sbjct: 184 ELTRRTDDPGQEYTPTWHPDGRSLAYVGDEGIAEVAADGTTRTLV-----PAPDGEVILH 238
Query: 420 DGSFPSFSPKGDRIAFVEFPGV---YVVNSDGSNRRQVYFKNAFSTVW-DPVREAVVYTS 475
PS+SP G+R+A+V G VV+ + F F+ W D R V+YT+
Sbjct: 239 ---APSWSPDGERLAYVRQEGTRADLVVDDRAVTDDEDVF--LFAAEWLDDHR--VLYTA 291
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-------------PSVSPDG 522
G A + +++ + + + R+ K + F P++SPD
Sbjct: 292 DG---ALRTRDLEAGTTRDVPFEATFELPRVDYRRKEHDFDDRSRHRVRGILTPALSPDA 348
Query: 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+ + F +L++M +G RLT ++++ +SPDG ++A+A+DR
Sbjct: 349 RQVAF----VALNDLWLMPIDGKP----RRLTHDQFAESNPVFSPDGRYLAYAADR---- 396
Query: 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642
+G+ ++Y+ R++ + G P FSPDG+ + F Q
Sbjct: 397 AGTPDLYVRDLRNGRERRV--TALDGAEVSPAFSPDGRKLAF----------------QD 438
Query: 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
Q G + + L ++++ + F G P+W
Sbjct: 439 QD-GATYVLDLRTGKVRQVVSSLFGPGRPSW 468
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 36/230 (15%)
Query: 413 DISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAV 471
D S R G P+ SP ++AFV ++++ DG RR + + A S
Sbjct: 330 DRSRHRVRGILTPALSPDARQVAFVALNDLWLMPIDGKPRRLTHDQFAESN--------P 381
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
V++ G A + + V D+ RR+T P+ SPDG+ + F+
Sbjct: 382 VFSPDGRYLAYAADRAGTPDLYVRDLRN-GRERRVTALDGAEVSPAFSPDGRKLAFQDQD 440
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE---- 587
Y++D G+ + ++ + +WS DG+ +AFA+ + P S F
Sbjct: 441 GA---TYVLDLRTGK---VRQVVSSLFGPGRPSWSADGKTLAFAAVK--PYSARFREGTS 492
Query: 588 ----------MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627
H G + G G P +SPDG+S+ F D
Sbjct: 493 QILTVDVATGQLTYHAPGEDHASISTRGDDG----PVWSPDGRSMAFVVD 538
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565
+T N + +PDG ++ + L EGG RLT M +
Sbjct: 62 VTVTEGTNLTAAAAPDGSVVM------DLQGLLFRVPEGGGK--AERLTSVEDEAAMPDV 113
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
PDG IA+ S D G F +++ +G +L G R P +SPDG +I F+
Sbjct: 114 GPDGR-IAYQSYAD----GRFHIWITDADGGNPVQLTHGGFDDR--EPRWSPDGTTIAFS 166
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SD GG +I+ + + +L R T + ++ TP W P
Sbjct: 167 SDRGGTY--------------DIWTVDVVTGELTRRTDDPGQEYTPTWHP 202
>gi|322833831|ref|YP_004213858.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Rahnella sp. Y9602]
gi|384259010|ref|YP_005402944.1| translocation protein TolB [Rahnella aquatilis HX2]
gi|321169032|gb|ADW74731.1| Tol-Pal system beta propeller repeat protein TolB [Rahnella sp.
Y9602]
gi|380754986|gb|AFE59377.1| translocation protein TolB [Rahnella aquatilis HX2]
Length = 430
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA++ +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYIVQTNGGKFPYELRVADYDGYNQFVVHRSPEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ A++++ + ++N P+ SPDG + F ++ G NLY+M+
Sbjct: 222 GRSALVVQTL------ANGAIKQIASFPRHNGAPAFSPDGSKLAFALSKDGSLNLYVMNL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T W PD + +AF SD+ G ++Y ++ NG ++L
Sbjct: 276 SSGQ---ISQVTNGRSNNTEPTWFPDSQNLAFTSDQ----GGRPQVYKVNINGGAPQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + + S DGK +V S G T H I K+ L ++ LT
Sbjct: 329 WEGSQNQDSD--VSTDGKFLVMVSSASG-------TQH-------IAKLDLATGAVQTLT 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -DTFLDETPSLAP 384
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAIKQIASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV+N QV + +T W P + + +TS +
Sbjct: 257 KLAFALSKDGSLNLYVMNLSSGQISQVTNGRSNNTEPTWFPDSQNLAFTS------DQGG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ A +RLT G N VS DGK++V S+ +G +++ +D G
Sbjct: 311 RPQVYKVNING----GAPQRLTWEGSQNQDSDVSTDGKFLVMVSSASGTQHIAKLDLATG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+ LT+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---AVQTLTD-TFLDETPSLAPNGTMVIYSSSQ---GLGSV-LQLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKFPAWSP 428
>gi|319781027|ref|YP_004140503.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166915|gb|ADV10453.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 436
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++ + R V + F+ + P + V+ +
Sbjct: 210 PRFSPNRQEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSPDGQKVIMS--- 266
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT + + PS SPDG +VF S R G +
Sbjct: 267 --LLRDDGNSNIFAMDLRS----RSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQI 320
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G + WSP G+ IAF G F++ ++ +G+G
Sbjct: 321 YVM---GADGSGQTRISFGDGVYSTPVWSPRGDLIAFTKQT----GGEFQIGVMKTDGSG 373
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
R L S + P ++P+G+ ++F D G
Sbjct: 374 ERIL---SSGFQQEGPTWAPNGRVLMFFRDSAG 403
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR L+ P SP+ + I + S +G +Y++ E G+
Sbjct: 187 LAIMDQDGAN-VRYLSDGRSIVLTPRFSPNRQEITYMSYESGQPRVYLLQIETGQ---RE 242
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ P +SPDG+ + + RD+ S F M L + T L + S
Sbjct: 243 LVGNFPGMTFAPRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTTRL-----TNSTAIDT 297
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG +VFTSD GG +I+ + DGS R+ SF DG
Sbjct: 298 SPSYSPDGSKVVFTSDRGG--------------RAQIYVMGADGSGQTRI---SFGDGVY 340
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 341 STPVWSPR 348
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 74/180 (41%), Gaps = 33/180 (18%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP K I R +S +I DL LT + T +P
Sbjct: 248 PGM-TFAPRFSPDGQKVIMSLLRDDGNS--NIFAMDLRSRSTTRLTNSTAIDT---SPSY 301
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
SPD S+V + RGG + DG+ Q IS S P +SP+GD
Sbjct: 302 SPDGSKVVFTSDRGGRAQIYVMGADGSGQT----------RISFGDGVYSTPVWSPRGDL 351
Query: 433 IAFVEFPG----VYVVNSDGSNRRQVYFKNAFST---VWDPVREAVVY---TSGGPEFAS 482
IAF + G + V+ +DGS R + F W P +++ ++GGP+ S
Sbjct: 352 IAFTKQTGGEFQIGVMKTDGSGER--ILSSGFQQEGPTWAPNGRVLMFFRDSAGGPKLVS 409
>gi|341583638|ref|YP_004764129.1| translocation protein TolB [Rickettsia heilongjiangensis 054]
gi|340807864|gb|AEK74452.1| translocation protein TolB [Rickettsia heilongjiangensis 054]
Length = 444
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 35/242 (14%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF 456
DG N L N KS + P F+ D+I +V + + RR + +
Sbjct: 187 DGANNKYLTNGKSLVLT----------PRFARSADKIFYVSY---------ATKRRVLVY 227
Query: 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI------NVDDVD-GVSAVRRLTTN 509
+ T + V S P F+ + + ++SI ++ ++D + +LT
Sbjct: 228 EKDLKTGKESVVGDFPGISFAPRFSPDGRKA-VMSIAKNGSTHIYEIDLATKRLHKLTDG 286
Query: 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569
N PS SPDGK IV+ S R G LYIM+++G + + R++ G S +WSP G
Sbjct: 287 FGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSD---VQRISFGGGSYAAPSWSPRG 343
Query: 570 EWIAFASDRDNPGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
++IAF G +F + ++ + ++I SG P +SP+G+ I+F
Sbjct: 344 DYIAFTKITRGDGGKTFNIGIMKACPQDDENSERIITSGYL--VESPCWSPNGRVIMFAK 401
Query: 627 DY 628
+
Sbjct: 402 GW 403
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 480 FASESSEV-DIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNL 537
+ SESS + I I + D DG A + TNGK+ P + I + S T + L
Sbjct: 168 YVSESSSLPKIKRIALMDYDG--ANNKYLTNGKSLVLTPRFARSADKIFYVSYATKRRVL 225
Query: 538 -YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
Y D + G+ + + P +SPDG + ++ GS +Y I
Sbjct: 226 VYEKDLKTGKE---SVVGDFPGISFAPRFSPDGRKAVMSIAKN----GSTHIYEIDLATK 278
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
L KL + G P +SPDGK IV+ SD G+ +++ + DGS
Sbjct: 279 RLHKL--TDGFGINTSPSYSPDGKKIVYNSDRNGVP--------------QLYIMNSDGS 322
Query: 657 DLKRLTQNSFEDGTPAWGPR 676
D++R++ P+W PR
Sbjct: 323 DVQRISFGGGSYAAPSWSPR 342
>gi|167618866|ref|ZP_02387497.1| translocation protein TolB [Burkholderia thailandensis Bt4]
gi|257138090|ref|ZP_05586352.1| translocation protein TolB [Burkholderia thailandensis E264]
gi|118574574|sp|Q2SYT0.2|TOLB_BURTA RecName: Full=Protein TolB; Flags: Precursor
Length = 433
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 140/337 (41%), Gaps = 66/337 (19%)
Query: 330 GNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSP-------KT-HHLNPFISP 379
G N F+A +R P Y+ + L+D VK + + + KT H + +I
Sbjct: 96 GANAFVAGSVSREPNGQYKVNFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQ 155
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y + G + D + Q + + S P IS P++SP
Sbjct: 156 KLLGVRGVFNTRLSYVQRTGNVYKLLISDSDGQNAIPALTSKEPIIS--------PAWSP 207
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSGGPEFA 481
G ++A+V F P VY+ + + RR V N + W P + +
Sbjct: 208 SGTKVAYVSFELRKPVVYIHDLP-TGRRYVISNQKGNNSAPAWSPDGQTLAVA------L 260
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S + I S++ S + RLT + + P SPDGKWI F S R G +Y M
Sbjct: 261 SLTGNTQIYSVSSTG----SGLHRLTRSSSIDTEPFYSPDGKWIYFTSDRGGAPQIYRMP 316
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
A G R+T +T SPDG+ +A+ S G F++Y+ +
Sbjct: 317 AGGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT----GGGFKLYV---------QD 363
Query: 602 IQSGSAG------RANHPYFSPDGKSIVFTSDYGGIS 632
+Q+G+A R P F+ +G+ I++ + GG S
Sbjct: 364 LQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRS 400
>gi|402825715|ref|ZP_10874979.1| translocation protein TolB [Sphingomonas sp. LH128]
gi|402260753|gb|EJU10852.1| translocation protein TolB [Sphingomonas sp. LH128]
Length = 463
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 49/267 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTV---WDPVREAVVYTSG 476
P +SP +I ++ + P +Y + ++R+ + + T+ W P + V+Y+
Sbjct: 236 PRYSPDYSKIMYLSYLNGQPSIYAYDL-ATDRQTLIARTGAPTLAPRWSPDGKWVLYS-- 292
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ DI I+ G +RLT N S SPDG IVF S R+G +
Sbjct: 293 ----MAKGGTTDIYRISSA---GGGTPQRLTNGPGINIGGSYSPDGSQIVFESDRSGSQQ 345
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+++G R++ WSP G+ IAF +G+ + ++ P+G
Sbjct: 346 VYVMNSDGSN---QRRISFFGGRAATPEWSPRGDQIAFTHI-----AGNLRVAVMSPSGG 397
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF--TSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G+R L S + P +SP+G+ + F T+ G+++ I+++ L
Sbjct: 398 GMRHLTDS---WQDEAPTWSPNGRIVQFFRTTKSTGLAS--------------IWQVDLT 440
Query: 655 GSDLKRL-TQNSFEDGTPAWGPRFIRP 680
G + ++L T D PAWGP IRP
Sbjct: 441 GRNERKLPTPVGASD--PAWGP--IRP 463
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
A TP SP +K + ++ S I +DL ++ + R +P L P SPD
Sbjct: 233 ALTPRYSPDYSKIMYLSYLNGQPS---IYAYDLATDRQTLIARTGAPT---LAPRWSPDG 286
Query: 382 SRVGYHKCRGGST-------REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA 434
V Y +GG+T G Q L P I++ S+SP G +I
Sbjct: 287 KWVLYSMAKGGTTDIYRISSAGGGTPQRLTNG-----PGINIGG------SYSPDGSQIV 335
Query: 435 FVE----FPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488
F VYV+NSDGSN+R++ F A + W P + + +T + + V
Sbjct: 336 FESDRSGSQQVYVMNSDGSNQRRISFFGGRAATPEWSPRGDQIAFT-----HIAGNLRVA 390
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI-VFRSTR-TGYKNLYIMDAEG 544
++S + +R LT + ++ A P+ SP+G+ + FR+T+ TG +++ +D G
Sbjct: 391 VMSPS------GGGMRHLTDSWQDEA-PTWSPNGRIVQFFRTTKSTGLASIWQVDLTG 441
>gi|337265841|ref|YP_004609896.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
opportunistum WSM2075]
gi|336026151|gb|AEH85802.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
opportunistum WSM2075]
Length = 436
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ + P VY++ + R V + F+ + P + V+ +
Sbjct: 210 PRFSPNRQEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSPDGQKVIMS--- 266
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ + RLT + + PS SPDG +VF S R G +
Sbjct: 267 --LLRDDGNSNIFAMDLRS----RSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQI 320
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G + WSP G+ IAF G F++ ++ +G+G
Sbjct: 321 YVM---GADGSGQTRISFGDGVYSTPVWSPRGDLIAFTKQT----GGEFQIGVMKTDGSG 373
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
R L S + P ++P+G+ ++F D G
Sbjct: 374 ERIL---SSGFQQEGPTWAPNGRVLMFFRDANG 403
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + VR L+ P SP+ + I + S +G +Y++ E G+
Sbjct: 187 LAIMDQDGAN-VRYLSDGRSIVLTPRFSPNRQEITYMSYESGQPRVYLLQIETGQ---RE 242
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ P +SPDG+ + + RD+ S F M L + T L + S
Sbjct: 243 LVGNFPGMTFAPRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTTRL-----TNSTAIDT 297
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG +VFTSD GG +I+ + DGS R+ SF DG
Sbjct: 298 SPSYSPDGSKVVFTSDRGG--------------RAQIYVMGADGSGQTRI---SFGDGVY 340
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 341 STPVWSPR 348
>gi|427411835|ref|ZP_18902037.1| hypothetical protein HMPREF9718_04511 [Sphingobium yanoikuyae ATCC
51230]
gi|425710125|gb|EKU73148.1| hypothetical protein HMPREF9718_04511 [Sphingobium yanoikuyae ATCC
51230]
Length = 984
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFAS 482
S SP G +A ++++ + G +++ YF +A VW P + Y F+
Sbjct: 49 SVSPDGKWLAVDLQGSLWIIPTSGGKAKRITDYFNDARQPVWSPDGSRLAY------FSY 102
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
D+ +I D D +R+LT ++ P+ SPDG+ I F S R+G +++ +D
Sbjct: 103 RDGNYDLWTIKPDGSD----MRKLTEGAYDDREPAWSPDGRTIAFSSDRSGNYDIWTLDI 158
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + +++ D M +WSPDG IA+ S D + + L + L+++
Sbjct: 159 ASG---AMKQVSSNGREDRMPSWSPDGARIAY-SGTDGAKTALYVTALADGQESLLKQV- 213
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634
G+ + P F P G+ D G E
Sbjct: 214 ----QGKIDAPSFGPGGELAYVVQDAQGSRLE 241
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS----GG 477
P+ SP G RIAF +YV++S G + A T W P +++VYTS G
Sbjct: 318 PTLSPDGSRIAFAALGDLYVMSSKGGVPENLTKDGALDTDPAWSPDGQSLVYTSDKGGGL 377
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
P+ + + D+D + +G A+ V DG+W G L
Sbjct: 378 PQLWIRDMKTG-KDRRLTDIDTQPLGAAWSHDGTRIAYIDV--DGRW--------GVAGL 426
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS---GSFEMYLIHPN 594
++D G+ + RL +WSPDG+++A S G+ ++Y++ +
Sbjct: 427 CVVDVATGK---ITRLQGSLGQPGSPSWSPDGKYVAIPLSYKYSNSFREGTNQVYMVPTD 483
Query: 595 GTG-----LRKLIQSGSAGRANHPYFSPDGKSIV 623
G G L + S P +SPDG +
Sbjct: 484 GVGKAFWHLPEPNMSMDTRAGGGPAWSPDGTKMA 517
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625
SPDG+W+A D GS +++I +G +++ + R P +SPDG + +
Sbjct: 51 SPDGKWLAV----DLQGS----LWIIPTSGGKAKRITDYFNDAR--QPVWSPDGSRLAYF 100
Query: 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
S G Y +++ IK DGSD+++LT+ +++D PAW P
Sbjct: 101 SYRDG----------NY----DLWTIKPDGSDMRKLTEGAYDDREPAWSP 136
>gi|374310281|ref|YP_005056711.1| TolB domain-containing protein [Granulicella mallensis MP5ACTX8]
gi|358752291|gb|AEU35681.1| TolB domain-containing protein [Granulicella mallensis MP5ACTX8]
Length = 445
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 35/256 (13%)
Query: 386 YHKCRGGSTRE------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF- 438
Y+ R G+ +E DG NQ + ++ + IS+ P SP R+AF
Sbjct: 182 YYSKRTGTGKEIWEMDYDGANQHEITHLGA----ISIS------PRVSPDNSRVAFSSLG 231
Query: 439 -PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
G + R V F +A T P + G + A SS I + D
Sbjct: 232 KDGFQIKMYSLLLGRLVNFTSAGGTNVSPA-----WAPSGQQLAFSSSRTGDPEIWISDP 286
Query: 498 DGVSAVRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556
+G A ++T+ + P+ +P G I + S RT LYIMDA+G G+ RLT+G
Sbjct: 287 EGRVA-HKITSFIGPDVSPTWNPKTGGQIAWISGRTHLPQLYIMDADGS---GVQRLTDG 342
Query: 557 PWSDTMCNWSPDGEWIAFASDRD-NPGS-GSFEMYLIHPNGTGLRKLIQ-SGSAGRANHP 613
++ T +WSP+G+++ FA DR PG+ G ++Y++ +K IQ + G + P
Sbjct: 343 GYA-TSPSWSPNGQFLTFAWDRKYGPGAPGGQDIYVME---IASKKWIQLTHDIGPCDFP 398
Query: 614 YFSPDGKSIVFTSDYG 629
+SPDG+ IVF + G
Sbjct: 399 SWSPDGRHIVFANGNG 414
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 32/263 (12%)
Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
+T G + +P SP N++ VA I+++ L+ + L F S +
Sbjct: 204 HEITHLGAISISPRVSPDNSR---VAFSSLGKDGFQIKMYSLLLGR---LVNFTSAGGTN 257
Query: 373 LNPFISPDSSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK 429
++P +P ++ + R G D ++ + PD+S P+++PK
Sbjct: 258 VSPAWAPSGQQLAFSSSRTGDPEIWISDPEGRVAHKITSFIGPDVS--------PTWNPK 309
Query: 430 -GDRIAFV----EFPGVYVVNSDGSN-RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
G +IA++ P +Y++++DGS +R A S W P + + +
Sbjct: 310 TGGQIAWISGRTHLPQLYIMDADGSGVQRLTDGGYATSPSWSPNGQFLTFAWDRKYGPGA 369
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
DI + + + +LT + FPS SPDG+ IVF + + + M A+
Sbjct: 370 PGGQDIYVMEIASKKWI----QLTHDIGPCDFPSWSPDGRHIVFANGNGAHTRIMSMLAD 425
Query: 544 GGEGYGLHRLTEGPWSDTMCNWS 566
G + L G SD M NWS
Sbjct: 426 GTQKQAL----TGAGSD-MPNWS 443
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 36/252 (14%)
Query: 180 IYVSTHENPGTPRTSWAAV----YSTELKTGLTRRL---TPYGVADFSPAVSPSGKYTAV 232
I +S +P R +++++ + ++ + L RL T G + SPA +PSG+ A
Sbjct: 212 ISISPRVSPDNSRVAFSSLGKDGFQIKMYSLLLGRLVNFTSAGGTNVSPAWAPSGQQLAF 271
Query: 233 ASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWI 292
+S G+ E+ +D +G KI G D S + + + WI
Sbjct: 272 SSSRT----GDPEIWISD------PEGRVAHKITSFIG----PDVSPTWNPKTGGQIAWI 317
Query: 293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP----TSSYRH 348
S + LPQ ++ + +QR+T G +A +P+ SP N +F+ A R +
Sbjct: 318 S-GRTHLPQLYIMDADGSGVQRLTDGG-YATSPSWSP-NGQFLTFAWDRKYGPGAPGGQD 374
Query: 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLL 403
I + ++ K+I+LT + P P SPD + + G TR DG +
Sbjct: 375 IYVMEIASKKWIQLTHDIGPCDF---PSWSPDGRHIVFANGNGAHTRIMSMLADGTQKQA 431
Query: 404 LENIKSPLPDIS 415
L S +P+ S
Sbjct: 432 LTGAGSDMPNWS 443
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,758,843,987
Number of Sequences: 23463169
Number of extensions: 602445651
Number of successful extensions: 1292451
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 3165
Number of HSP's that attempted gapping in prelim test: 1247232
Number of HSP's gapped (non-prelim): 25433
length of query: 721
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 571
effective length of database: 8,839,720,017
effective search space: 5047480129707
effective search space used: 5047480129707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)