BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004971
(721 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28TS0|TOLB_JANSC Protein TolB OS=Jannaschia sp. (strain CCS1) GN=tolB PE=3 SV=1
Length = 445
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 40/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNA----FSTVWDPVREAVVYTS 475
P FSP+GDRI + FP VY+++ RR + A FS + P ++VV++
Sbjct: 215 PRFSPQGDRILYTSYESGFPQVYIMDVATVQRRPLEAIPAETMTFSPRFSPSGQSVVFS- 273
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ S DI S+++ R+LT PS SPDG IVF S R+G +
Sbjct: 274 -----LVDGSNTDIYSLDL----ATGTRRQLTQAPSIETAPSFSPDGSQIVFESDRSGNQ 324
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
+YIM A+GGE R++ G WSP G++IAF + G F + ++ +G
Sbjct: 325 QIYIMPADGGEA---RRVSAGTGRYGTPVWSPRGDYIAFTKQEN----GRFHIGVMRTDG 377
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
+ R L S+ P ++P+G+ I+FT + G P ++ + + G
Sbjct: 378 SDERLLT---SSFLDEGPTWAPNGRVIMFTRETPGDDGAP-----------AVYSVDISG 423
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
+L+R+ PAW P
Sbjct: 424 RNLQRVATPGMAS-DPAWSP 442
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G I++ S +G+ +YIMD +
Sbjct: 192 LAIMDYDGAN-VQFLTDSRSIVLAPRFSPQGDRILYTSYESGFPQVYIMDVATVQ----R 246
Query: 552 RLTEGPWSDTMC---NWSPDGEWIAFA-SDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGS 606
R E ++TM +SP G+ + F+ D N S ++ TG R+ L Q+ S
Sbjct: 247 RPLEAIPAETMTFSPRFSPSGQSVVFSLVDGSNTDIYSLDL------ATGTRRQLTQAPS 300
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
A P FSPDG IVF SD G +I+ + DG + +R++ +
Sbjct: 301 IETA--PSFSPDGSQIVFESDRSGNQ--------------QIYIMPADGGEARRVSAGTG 344
Query: 667 EDGTPAWGPR 676
GTP W PR
Sbjct: 345 RYGTPVWSPR 354
>sp|Q3A097|TOLB_PELCD Protein TolB OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=tolB PE=3 SV=1
Length = 443
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 50/304 (16%)
Query: 379 PDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
P SSR+ Y R G DG N L L + +S + + P FSP G +
Sbjct: 177 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLN----------PDFSPNGREV 226
Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
+ + P +Y ++ FK + A + G E A S
Sbjct: 227 IYTSYRRGNPDLYRKQLSTGQEARLAFKKGLNI-------AARFRPDGREIALTQSATGN 279
Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
+ + DG S RRLT++ + PS SP G + F S R G ++++MD GG+
Sbjct: 280 PELMLLGTDG-SRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQ--- 335
Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
RLT + WSPDG+ IAF G F++Y + P+GT R+L + G
Sbjct: 336 TARLTANGKYNATPAWSPDGKRIAFT----RLEKGVFDIYTVRPDGTDERRL--TFGPGN 389
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
HP +SPD + +V++SD G I+ ++ DG+ ++R++ +
Sbjct: 390 KEHPRWSPDSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQ 435
Query: 670 TPAW 673
PAW
Sbjct: 436 HPAW 439
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407
H EL+ L+ R ++ LNP SP+ V Y R GN L + +
Sbjct: 191 HKELY-LMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYR------RGNPDLYRKQL 243
Query: 408 KSPLPDISLFRFDGSFPS-FSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAF 460
+ F+ + + F P G IA + P + ++ +DGS RR++ ++
Sbjct: 244 STGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDV 303
Query: 461 STVWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517
W P + + + S G P +D + G +A RLT NGK NA P+
Sbjct: 304 DPSWSPAGDRLAFVSDRQGNPHI-----------FVMDLLGGQTA--RLTANGKYNATPA 350
Query: 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577
SPDGK I F G ++Y + +G + RLT GP + WSPD ++ ++SD
Sbjct: 351 WSPDGKRIAFTRLEKGVFDIYTVRPDGTDE---RRLTFGPGNKEHPRWSPDSRFLVYSSD 407
Query: 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616
+D G +Y++ +GTG+R++ S G+ HP +S
Sbjct: 408 QD----GRKGIYIMRADGTGIRRI--SAGGGQCQHPAWS 440
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 428 PKGDRIAFVE----FPGVYVVNSDGSN------RRQVYFKNAFSTVWDPVREAVVYTS-- 475
P RIA+++ +Y++++DG+N R + FS P V+YTS
Sbjct: 177 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLNPDFS----PNGREVIYTSYR 232
Query: 476 -GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G P+ + G A RL N PDG+ I + TG
Sbjct: 233 RGNPDLYRKQLST-----------GQEA--RLAFKKGLNIAARFRPDGREIALTQSATGN 279
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
L ++ G +G RLT D +WSP G+ +AF SDR G+ ++++
Sbjct: 280 PELMLL---GTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDR----QGNPHIFVMDLL 332
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
G +L +G P +SPDGK I FT G+ +I+ ++ D
Sbjct: 333 GGQTARLTANGKYNAT--PAWSPDGKRIAFTRLEKGVF--------------DIYTVRPD 376
Query: 655 GSDLKRLTQNSFEDGTPAWGP--RFI 678
G+D +RLT P W P RF+
Sbjct: 377 GTDERRLTFGPGNKEHPRWSPDSRFL 402
>sp|Q1GE19|TOLB_RUEST Protein TolB OS=Ruegeria sp. (strain TM1040) GN=tolB PE=3 SV=1
Length = 441
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP ++V++ RR + N +F+ + P + +VY+
Sbjct: 212 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQ- 270
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ D+ S++++ + +RLT+ PS SPDG IVF S R+G
Sbjct: 271 -----SQGGNTDLFSMDINSGN----PQRLTSAPSIETAPSFSPDGSQIVFESDRSGTSQ 321
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G++IAF +G F + ++ +G+
Sbjct: 322 LYVMSASGGEA---KRISFGQGRYGTPVWSPRGDYIAFTKQN----AGRFHIGVMRTDGS 374
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S + ++ + + G
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGQ-----------ARLYSVDISGR 420
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+LK + T + D P+W P
Sbjct: 421 NLKPVKTPDGASD--PSWSP 438
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 111/254 (43%), Gaps = 48/254 (18%)
Query: 428 PKGDR---IAFVEFPGV---YVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
PK DR +A +++ G Y+ NSD + FS P + V+YTS
Sbjct: 181 PKNDRKKRLAIMDYDGANVQYLTNSDA-----IVLAPRFS----PTGDRVLYTS------ 225
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
E I+V DV V NG + P +P+G+ IV+ ++ G +L+ MD
Sbjct: 226 ---YESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQSQGGNTDLFSMD 282
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
G RLT P +T ++SPDG I F SDR SG+ ++Y++ +G G K
Sbjct: 283 INSGN---PQRLTSAPSIETAPSFSPDGSQIVFESDR----SGTSQLYVMSASG-GEAKR 334
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
I G GR P +SP G I FT G I ++ DGS+ +RL
Sbjct: 335 ISFGQ-GRYGTPVWSPRGDYIAFTKQNAG--------------RFHIGVMRTDGSE-ERL 378
Query: 662 TQNSFEDGTPAWGP 675
SF D P W P
Sbjct: 379 LTASFLDEGPTWSP 392
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S +G+ ++++D G
Sbjct: 189 LAIMDYDGAN-VQYLTNSDAIVLAPRFSPTGDRVLYTSYESGFPQIHVLDV----GRVQR 243
Query: 552 R-LTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
R L+ G S + ++P+G+ I ++ + G+ +++ + N ++L + S
Sbjct: 244 RVLSAGNGSMSFAPRFAPNGQTIVYSQSQ----GGNTDLFSMDINSGNPQRLTSAPSIET 299
Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
A P FSPDG IVF SD G S +++ + G + KR++ G
Sbjct: 300 A--PSFSPDGSQIVFESDRSGTS--------------QLYVMSASGGEAKRISFGQGRYG 343
Query: 670 TPAWGPR 676
TP W PR
Sbjct: 344 TPVWSPR 350
>sp|Q39PS9|TOLB_GEOMG Protein TolB OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=tolB PE=3 SV=1
Length = 429
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 116/261 (44%), Gaps = 43/261 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNS-DGSNRRQVYFKNAFST-VWDPVREAVVYTSGG 477
P FSP G I F + P ++ G+ R ++ +T W P + + T
Sbjct: 205 PDFSPSGKEIIFTSYRQGNPDLFRRELFTGAEARISSYRGINATGAWSPDGKTIALT--- 261
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +I +I+ D + RLT P+ SPD + IVF S R G +
Sbjct: 262 ---LSKDGNSEIYTISRDGKN----PHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQI 314
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
+IM+A+G G+ RLT + WSP G+ I ++ G F++Y I+P+GT
Sbjct: 315 FIMNADG---TGVRRLTTSGNYNVSPRWSPKGDRIVYSRQ-----EGGFQIYAINPDGTN 366
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE-IFKIKLDGS 656
+L GS HP +SPDG+ I F+S GG GE I+ ++ DGS
Sbjct: 367 DTRLTSEGSN---EHPRWSPDGRFITFSSTRGG---------------GEGIYVMRADGS 408
Query: 657 DLKRLTQNSFEDGTPAWGPRF 677
R++ D P W PR+
Sbjct: 409 GQTRVSGGKGRDSHPTWSPRW 429
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 42/275 (15%)
Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---- 359
L+ + ++Q++T P SP + I + R+ ELF + +
Sbjct: 184 LMDYDGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNPDLFRRELFTGAEARISSYR 243
Query: 360 -IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR 418
I T SP + +S D + Y R DG N L N + ++S
Sbjct: 244 GINATGAWSPDGKTIALTLSKDGNSEIYTISR------DGKNPHRLTNTSAI--EVS--- 292
Query: 419 FDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVV 472
P++SP +I FV P ++++N+DG+ R++ + S W P + +V
Sbjct: 293 -----PAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTTSGNYNVSPRWSPKGDRIV 347
Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
Y+ + I +IN D + RLT+ G +N P SPDG++I F STR
Sbjct: 348 YSR-------QEGGFQIYAINPDGTNDT----RLTSEG-SNEHPRWSPDGRFITFSSTRG 395
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
G + +Y+M A+G G R++ G D+ WSP
Sbjct: 396 GGEGIYVMRADGS---GQTRVSGGKGRDSHPTWSP 427
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-NPGS 583
I F STR G K +++MD +G+ + +LT+ + ++SP G+ I F S R NP
Sbjct: 170 IAFVSTRAGAKAIFLMDY---DGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNPDL 226
Query: 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
E++ TG I S A + SPDGK+I T G S
Sbjct: 227 FRRELF------TGAEARISSYRGINATGAW-SPDGKTIALTLSKDGNS----------- 268
Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
EI+ I DG + RLT S + +PAW P + V V +
Sbjct: 269 ---EIYTISRDGKNPHRLTNTSAIEVSPAWSPDVRKIVFVSD 307
>sp|Q8KEQ0|TOLB_CHLTE Protein TolB OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=tolB PE=3 SV=1
Length = 434
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 127/282 (45%), Gaps = 47/282 (16%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG N + L N +S ISL P+ SP G IA+ ++ P +Y+ N + G+
Sbjct: 191 DGENVVQLTNSRS----ISLT------PAVSPDGTYIAWTDYTSGKPNLYIKNIATGAKV 240
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
S W P +V T S + D+ I D + RRLT G
Sbjct: 241 SVNKHGVCISPAWRPGTNTLVTT------LSYEGDQDLYLIRADG----TVERRLTKGGG 290
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
+ P+ SPDG + F STR G ++I D G+ + RLT +T +WSP+G+
Sbjct: 291 IDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQ---VRRLTYSGIYNTQPSWSPNGDK 347
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
I ++S + SG ++ I+ +G+GL +L SGS G HP +SPDG IVF+S G
Sbjct: 348 ILYSSMQK---SGEINIFSINVDGSGLLQLT-SGS-GNNEHPSWSPDGSMIVFSSTRDGR 402
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
++ + DGS+ + L E P+W
Sbjct: 403 R--------------RLYVMNADGSNQRPLLNMQGEQQQPSW 430
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG------ 545
I + D DG + V+ LT + + P+VSPDG +I + +G NLYI + G
Sbjct: 185 IYMCDFDGENVVQ-LTNSRSISLTPAVSPDGTYIAWTDYTSGKPNLYIKNIATGAKVSVN 243
Query: 546 ----------------------------------EGYGLHRLTEGPWSDTMCNWSPDGEW 571
+G RLT+G D +SPDG
Sbjct: 244 KHGVCISPAWRPGTNTLVTTLSYEGDQDLYLIRADGTVERRLTKGGGIDVSPTFSPDGSK 303
Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
+AF S R G ++++ N +R+L SG P +SP+G I+++S
Sbjct: 304 MAFVSTRQ----GGPQIFIQDMNSGQVRRLTYSGIYN--TQPSWSPNGDKILYSS----- 352
Query: 632 SAEPISTPHQYQPYGEI--FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q GEI F I +DGS L +LT S + P+W P
Sbjct: 353 ----------MQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSP 388
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 33/266 (12%)
Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
RT +Y + +LT +PAVSP G Y A Y + + ++ ++T
Sbjct: 179 RTGNKEIYMCDFDGENVVQLTNSRSISLTPAVSPDGTYIAWTDYTSGKPNLYIKNIATGA 238
Query: 252 YIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
+ + + G V I P W + S E D +Y L+ +
Sbjct: 239 KVSVNKHG---VCIS-----PAWRPGTNTLVTTLSYEGDQ-DLY--------LIRADGTV 281
Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
+R+T G +P SP +K V+TR+ I + D+ ++ R +
Sbjct: 282 ERRLTKGGGIDVSPTFSPDGSKMAFVSTRQGGP---QIFIQDMNSG---QVRRLTYSGIY 335
Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPLPDISLFRFDGSFPSFSPKG 430
+ P SP+ ++ Y S ++ G + N+ S L ++ + PS+SP G
Sbjct: 336 NTQPSWSPNGDKILYS-----SMQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSPDG 390
Query: 431 DRIAFVEFPG----VYVVNSDGSNRR 452
I F +YV+N+DGSN+R
Sbjct: 391 SMIVFSSTRDGRRRLYVMNADGSNQR 416
>sp|Q3SGT4|TOLB_THIDA Protein TolB OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=tolB PE=3 SV=1
Length = 427
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 137/309 (44%), Gaps = 61/309 (19%)
Query: 381 SSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
SSR+ Y + +G DG N + ++S P IS P FSP G R+A+
Sbjct: 166 SSRIAYVQKQGKRYELRVADADGQNPRTI--VRSLEPLIS--------PMFSPDGTRLAY 215
Query: 436 VEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEV 487
V F P VYV + RR+V FK + S W P + AVV T G
Sbjct: 216 VSFEDKKPVVYVQSLQQGGRRKVAAFKGSNSAPAWSPDGRQLAVVLTRDGAS-------- 267
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I INVD S + RL +G + P SPDG+ + F S R G +Y + GG+
Sbjct: 268 QIYLINVDG----SGLTRLMRSGDIDTEPVFSPDGQTLYFTSDRGGSPQIYRVAKSGGDA 323
Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
R++ EG + + SPDG ++A+ S RD G F + L R L ++
Sbjct: 324 ---KRVSFEGSY-NVSPTISPDGRYLAYIS-RDG---GRFRVVLQELASGQTRVLTET-- 373
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
R P F+P+G+++++ + GG G + + LDG RL+++
Sbjct: 374 -TRDEAPSFAPNGQAVLYATVQGG--------------RGVLGTVTLDGKTRARLSESGV 418
Query: 667 EDGTPAWGP 675
+ PAWGP
Sbjct: 419 DAREPAWGP 427
>sp|Q74H67|TOLB_GEOSL Protein TolB OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM
12127 / PCA) GN=tolB PE=3 SV=1
Length = 432
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGP 478
P FSP G +A+ + P ++ RR+++ A + + ++ G
Sbjct: 208 PDFSPNGRELAYTSYRRGNPDLF--------RREIFTGTEAVVSSHRGINVTGTWSPDGK 259
Query: 479 EFA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
+ A S +I +I+ D D RRLTT+ + P+ SPDGK I F S R G
Sbjct: 260 QLALAMSRDGNSEIYAISRDGRD----PRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKP 315
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
++IM+A+G + + RLT + WSP G+ + + G F++Y I +G
Sbjct: 316 QVFIMNADGSD---VRRLTTSGAYNVSPRWSPKGDRLVYCRQ-----EGGFQIYSIATDG 367
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
TG +L GS HP +SPDG+ + F+S G A I+ ++ DG
Sbjct: 368 TGDTRLTSEGS---NEHPRWSPDGRFLTFSSTRDGGEA--------------IYVMRSDG 410
Query: 656 SDLKRLTQNSFEDGTPAWGPRF 677
S R+ ++ + P W PR+
Sbjct: 411 SGQTRVYRSKGKASHPTWSPRW 432
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 28/205 (13%)
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
+ A S+E I + D DG + V+RLT N N P SP+G+ + + S R G +L+
Sbjct: 172 KIAFVSTESGNKEIYLMDYDGHN-VQRLTKNRSINLNPDFSPNGRELAYTSYRRGNPDLF 230
Query: 539 IMDAEGGEGYGL--HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+ G + HR + WSPDG+ +A A RD G+ E+Y I +G
Sbjct: 231 RREIFTGTEAVVSSHRGI-----NVTGTWSPDGKQLALAMSRD----GNSEIYAISRDGR 281
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R+L + + P +SPDGK I F SD G +P ++F + DGS
Sbjct: 282 DPRRLTTHQAIDVS--PAWSPDGKRIAFVSDRLG------------KP--QVFIMNADGS 325
Query: 657 DLKRLTQNSFEDGTPAWGPRFIRPV 681
D++RLT + + +P W P+ R V
Sbjct: 326 DVRRLTTSGAYNVSPRWSPKGDRLV 350
>sp|Q167Z6|TOLB_ROSDO Protein TolB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh
114) GN=tolB PE=3 SV=1
Length = 443
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP G RI + FP +YV++ RR + + +F+ + P + +V++
Sbjct: 214 PRFSPDGQRILYTSYETGFPRIYVLDVTSLQRRGLESQEGTMSFAPRFAPDGQTIVFS-- 271
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S+ DI +NV+ G SA R LT+ PS SPDG IVF S R+G +
Sbjct: 272 ----LSQGGNTDIYRMNVN---GGSATR-LTSAPSIETAPSYSPDGTQIVFESDRSGSQQ 323
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ GP WSP G+ +AF +G F + ++ +G+
Sbjct: 324 LYVMPANGGEA---RRISFGPGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRLDGS 376
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+F+ + G Q ++ + + G
Sbjct: 377 EERLLTAS---FLDEGPTWSPNGRVIMFSRETQGA-----------QGRATLYSVDITGR 422
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+ + + E G+ P+W P
Sbjct: 423 NLRPV--RTPEGGSDPSWSP 440
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 91/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SPDG+ I++ S TG+ +Y++D + GL
Sbjct: 191 LAIMDYDGAN-VKYLTDSSSIVLAPRFSPDGQRILYTSYETGFPRIYVLDVTSLQRRGLE 249
Query: 552 ------------------------------------------RLTEGPWSDTMCNWSPDG 569
RLT P +T ++SPDG
Sbjct: 250 SQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLTSAPSIETAPSYSPDG 309
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SGS ++Y++ NG R++ S GR P +SP G + FT
Sbjct: 310 TQIVFESDR----SGSQQLYVMPANGGEARRI--SFGPGRYGTPVWSPRGDLVAFTKQNA 363
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G I ++LDGS+ +RL SF D P W P
Sbjct: 364 G--------------RFHIGVMRLDGSE-ERLLTASFLDEGPTWSP 394
>sp|Q20X63|TOLB_RHOPB Protein TolB OS=Rhodopseudomonas palustris (strain BisB18) GN=tolB
PE=3 SV=2
Length = 447
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + V+ +
Sbjct: 220 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRVIMS--- 276
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS +PDG I F S R G +
Sbjct: 277 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYAPDGSKICFESDRGGKPQI 329
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 330 YVMPAGGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 382
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +F + + G
Sbjct: 383 ERLL----TSGYHNEGPTFAPNGRVLMFFRDPGGNGGP------------SLFTVDISGR 426
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ +++ F PAW P
Sbjct: 427 NEQKVPTPGFAS-DPAWSP 444
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 24/193 (12%)
Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
S E + + + D DG + VR LT P SP + I + G +Y+ + E
Sbjct: 189 SKERRVKRLALMDQDGAN-VRYLTRGADLVLTPRFSPSTQEITYMEFGQGDPRVYLFNIE 247
Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
G+ + P +SPDG+ + + + G+ ++++ +L
Sbjct: 248 TGQ---REIVGNFPGMSFSPRFSPDGQRVIMSLQQ----GGNSNLFVMDLRSKSTTRLTD 300
Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
+ + P ++PDG I F SD GG +P +I+ + G +R++
Sbjct: 301 TPAI--DTSPSYAPDGSKICFESDRGG------------KP--QIYVMPAGGGGAQRISF 344
Query: 664 NSFEDGTPAWGPR 676
TP W PR
Sbjct: 345 GEGSYSTPVWSPR 357
>sp|A4WQ04|TOLB_RHOS5 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=tolB PE=3 SV=1
Length = 444
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 37/258 (14%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
P FSP GDRI F + S G R +Y + S + E + P FA +
Sbjct: 215 PRFSPTGDRILFTSY-------STGFPR--IYLMDVGSLATRSLAEQPGTMTFAPRFAPD 265
Query: 484 SSEVDII-----SINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYKNL 537
V + ++ +D S RR TN + PS SPDG IVF S R+G + L
Sbjct: 266 GRTVAFSLEQGGNTDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQL 325
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 326 YIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGSE 378
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
R L S P ++P+G+ ++FT + G +P ++ + + G +
Sbjct: 379 ERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGRN 424
Query: 658 LKRLTQNSFEDGTPAWGP 675
LK++ S PAW P
Sbjct: 425 LKKVPL-SVPASDPAWSP 441
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 192 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDV---GSLATR 247
Query: 552 RLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
L E P + T ++PDG +AF+ ++ G+ ++Y + R+L S S A
Sbjct: 248 SLAEQPGTMTFAPRFAPDGRTVAFSLEQ----GGNTDIYTLDTASGTRRQLTNSPSIETA 303
Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
P +SPDG IVF SD G +++ + G + +R++ + GT
Sbjct: 304 --PSYSPDGSQIVFESDRSGGQ--------------QLYIMPAGGGEPRRISNGAGRYGT 347
Query: 671 PAWGPR 676
P W PR
Sbjct: 348 PVWSPR 353
>sp|Q6NAR1|TOLB_RHOPA Protein TolB OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=tolB PE=3 SV=1
Length = 444
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 217 PRFSPTNQEITYMEFGQGEPRVYLFNVETGQREIVGNFPGMSFAPRFSPDGQRIIMS--- 273
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ A RLT + PS +PDG I F S R G +
Sbjct: 274 ---LQQGGNSNLFVMDLRS----KATTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQI 326
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 327 YIMPASGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 379
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +A P +F + + G
Sbjct: 380 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLFTVDVSGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 424 NELRVPTPGYAS-DPAWSP 441
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES D + + + D DG + VR LT P SP + I + G +
Sbjct: 180 FIDESGPADRRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPTNQEITYMEFGQGEPRV 238
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 239 YLFNVETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLFVMDLRSKA 291
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P ++PDG I F SD GG +P +I+ + G
Sbjct: 292 TTRLTDTPAI--DTSPSYAPDGSRICFESDRGG------------KP--QIYIMPASGGQ 335
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 336 AQRI---SFGDGSYSTPVWSPR 354
>sp|A8LHQ6|TOLB_DINSH Protein TolB OS=Dinoroseobacter shibae (strain DFL 12) GN=tolB PE=3
SV=1
Length = 446
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 48/264 (18%)
Query: 424 PSFSPKGDRIAFVEFP---------GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVY- 473
P FSP GDR+ + + V V S G Q + +F+ + P +VV+
Sbjct: 216 PRFSPTGDRVLYTSYATGRPQITLLDVNSVRSQGLGSAQ-GGEMSFAPRFSPDGRSVVFS 274
Query: 474 -TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532
T+GG DI ++ A RLT PS SPDG+ IVF S R+
Sbjct: 275 LTNGG--------NSDIYRRDLSS----GAQTRLTATPAIETAPSFSPDGRQIVFESDRS 322
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + LY+M A GGE R++ GP WSP G+ IAF G F + ++
Sbjct: 323 GSQQLYVMSATGGEA---RRISFGPGRYGTPVWSPRGDLIAFTKQNQ----GRFHIGVMR 375
Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
+G+ R L S+ P +SP+G+ I+FT + G P ++ +
Sbjct: 376 TDGSEERLLT---SSFLDESPTWSPNGRVIMFTRETSGAGGAP-----------SLYSVD 421
Query: 653 LDGSDLKRL-TQNSFEDGTPAWGP 675
+ G +L+R+ T + D PAW P
Sbjct: 422 ISGRNLRRVPTPGAASD--PAWSP 443
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG + V+ LT + P SP G +++ S TG + ++D GL
Sbjct: 193 LAIMDYDGAN-VQFLTDSSAIVLAPRFSPTGDRVLYTSYATGRPQITLLDVNSVRSQGLG 251
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-- 609
G S +SPDG + F+ G+ ++Y R+ + SG+ R
Sbjct: 252 SAQGGEMS-FAPRFSPDGRSVVFSLTN----GGNSDIY---------RRDLSSGAQTRLT 297
Query: 610 -----ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
P FSPDG+ IVF SD G +++ + G + +R++
Sbjct: 298 ATPAIETAPSFSPDGRQIVFESDRSGSQ--------------QLYVMSATGGEARRISFG 343
Query: 665 SFEDGTPAWGPR 676
GTP W PR
Sbjct: 344 PGRYGTPVWSPR 355
>sp|Q3J041|TOLB_RHOS4 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1
/ NCIB 8253 / DSM 158) GN=tolB PE=3 SV=1
Length = 444
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P FSP GDRI F FP +Y+++ R + + F+ + P V ++
Sbjct: 215 PRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFS-- 272
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI +++ G R+LT + PS SPDG IVF S R+G +
Sbjct: 273 ----LEQGGNTDIYTLDT----GSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 324
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 325 LYIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGS 377
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G +P ++ + + G
Sbjct: 378 EERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK++ S PAW P
Sbjct: 424 NLKKVPL-SVPASDPAWSP 441
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 192 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLA 250
Query: 543 ------------------------EGGE--------GYGLHR-LTEGPWSDTMCNWSPDG 569
+GG G G R LT P +T ++SPDG
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDG 310
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG ++Y I P G G + I +G AGR P +SP G I FT
Sbjct: 311 SQIVFESDR----SGGQQLY-IMPAGGGEPRRISNG-AGRYGTPVWSPRGDLIAFT---- 360
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+Q I ++ DGS+ +RL SF D P W P
Sbjct: 361 ----------KQHQGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 395
>sp|A3PM58|TOLB_RHOS1 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=tolB PE=3 SV=1
Length = 444
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P FSP GDRI F FP +Y+++ R + + F+ + P V ++
Sbjct: 215 PRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFS-- 272
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI +++ G R+LT + PS SPDG IVF S R+G +
Sbjct: 273 ----LEQGGNTDIYTLDT----GSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 324
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYIM A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 325 LYIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGS 377
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P ++P+G+ ++FT + G +P ++ + + G
Sbjct: 378 EERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGR 423
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+LK++ S PAW P
Sbjct: 424 NLKKVPL-SVPASDPAWSP 441
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--------- 542
+ V D DG + V+ LT + P SP G I+F S TG+ +Y+MD
Sbjct: 192 LAVMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRILFTSYSTGFPRIYLMDVGSLATRGLA 250
Query: 543 ------------------------EGGE--------GYGLHR-LTEGPWSDTMCNWSPDG 569
+GG G G R LT P +T ++SPDG
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDG 310
Query: 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
I F SDR SG ++Y I P G G + I +G AGR P +SP G I FT
Sbjct: 311 SQIVFESDR----SGGQQLY-IMPAGGGEPRRISNG-AGRYGTPVWSPRGDLIAFT---- 360
Query: 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
Q+Q I ++ DGS+ +RL SF D P W P
Sbjct: 361 ----------KQHQGRFHIGVMRTDGSE-ERLLTASFLDEGPTWAP 395
>sp|B4UDE1|TOLB_ANASK Protein TolB OS=Anaeromyxobacter sp. (strain K) GN=tolB PE=3 SV=1
Length = 434
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P G A SE ++ + V DGV A R+LT++
Sbjct: 239 PLGRHRNAFGGVYSP---------DGSRIAFTVSEGNVTDLWVMSADGVGA-RKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVSPDSGAINRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G HR G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRHRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGVGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>sp|Q1D0D0|TOLB_MYXXD Protein TolB OS=Myxococcus xanthus (strain DK 1622) GN=tolB PE=3
SV=1
Length = 431
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 377 ISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD R+ Y G S + DG+ L + L + P++SP G
Sbjct: 246 FSPDGKRIAYSLAEGESAQVYVANADGSGARALTDTPYGL---------NTSPTWSPDGK 296
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
RIAFV P VY++N+DG+ R++ F+ ++ W P + +V+T+ E +
Sbjct: 297 RIAFVSNRGGSPQVYIMNADGTGVRRLTFQGNYNQTPDWSPRGDLIVFTA-----RDERN 351
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
D+ +++V+ V RLT + +N P+ SP+G+ IVF STR G LY+M A+G
Sbjct: 352 AFDLFTVSVE----TGKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGN 407
Query: 546 EGYGLHRLTEGPWSDTMCNWSP 567
L R +G + +WSP
Sbjct: 408 NQLPL-RTEKGTYQ--TPDWSP 426
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ S G ++AF + P +YV S G + V +T ++ G
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYV-QSPGGEAKAVISGGQMAT-------GAAFSPDGK 251
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A +E + + V + DG A T N P+ SPDGK I F S R G +Y
Sbjct: 252 RIAYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVY 311
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
IM+A +G G+ RLT +G ++ T +WSP G+ I F A D N +F+++ +
Sbjct: 312 IMNA---DGTGVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN----AFDLFTVSVETG 363
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q G P FSP+G+ IVFTS G S +++ + DG+
Sbjct: 364 KVTRLTQ--DQGSNEEPAFSPNGRLIVFTSTRNGGS--------------QLYVMTADGN 407
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 408 NQLPLRTEKGTYQTPDWSP 426
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R T G N P++S DG + F + R ++Y+ + GGE
Sbjct: 179 VYVADWDGGNA--RALTKGGINILPALSQDGSQVAFTTYRKNRPDIYVQ-SPGGEA---K 232
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ G T +SPDG+ IA++ S ++Y+ + +G+G R L + G
Sbjct: 233 AVISGGQMATGAAFSPDGKRIAYSLAEGE----SAQVYVANADGSGARALTDT-PYGLNT 287
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK I F S+ GG +P +++ + DG+ ++RLT + TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG-------SP-------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 672 AWGPRFIRPVDVEEVKNEQCAFE 694
W PR + V ++E+ AF+
Sbjct: 334 DWSPR--GDLIVFTARDERNAFD 354
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 300 PQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF 359
PQ +++ + ++R+T G + TP SP I R +++ +LF V +
Sbjct: 308 PQVYIMNADGTGVRRLTFQGNYNQTPDWSP-RGDLIVFTARDERNAF---DLF-TVSVET 362
Query: 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIK------ 408
++TR + + P SP+ + + R G ++ DGNNQL L K
Sbjct: 363 GKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGNNQLPLRTEKGTYQTP 422
Query: 409 --SPLP 412
SPLP
Sbjct: 423 DWSPLP 428
>sp|Q84FF7|TOLB_MYXXA Protein TolB OS=Myxococcus xanthus GN=tolB PE=3 SV=1
Length = 431
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 377 ISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
SPD R+ Y G S + DG+ L + L + P++SP G
Sbjct: 246 FSPDGKRIAYSLAEGESAQVYVANADGSGARALTDTPYGL---------NTSPTWSPDGK 296
Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESS 485
RIAFV P VY++N+DG+ R++ F+ ++ W P + +V+T+ E +
Sbjct: 297 RIAFVSNRGGSPQVYIMNADGTGVRRLTFQGNYNQTPDWSPRGDLIVFTA-----RDERN 351
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
D+ +++V+ V RLT + +N P+ SP+G+ IVF STR G LY+M A+G
Sbjct: 352 AFDLFTVSVE----TGKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGN 407
Query: 546 EGYGLHRLTEGPWSDTMCNWSP 567
L R +G + +WSP
Sbjct: 408 NQLPL-RTEKGTYQ--TPDWSP 426
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)
Query: 423 FPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
P+ S G ++AF + P +YV S G + V +T ++ G
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYV-QSPGGEAKAVISGGQMAT-------GAAFSPDGK 251
Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
A +E + + V + DG A T N P+ SPDGK I F S R G +Y
Sbjct: 252 RIAYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVY 311
Query: 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGT 596
IM+A +G G+ RLT +G ++ T +WSP G+ I F A D N +F+++ +
Sbjct: 312 IMNA---DGTGVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERN----AFDLFTVSVETG 363
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
+ +L Q G P FSP+G+ IVFTS G S +++ + DG+
Sbjct: 364 KVTRLTQ--DQGSNEEPAFSPNGRLIVFTSTRNGGS--------------QLYVMTADGN 407
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ L TP W P
Sbjct: 408 NQLPLRTEKGTYQTPDWSP 426
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ V D DG +A R T G N P++S DG + F + R ++Y+ + GGE
Sbjct: 179 VYVADWDGGNA--RALTKGGINILPALSQDGSQVAFTTYRKNRPDIYVQ-SPGGEA---K 232
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ G T +SPDG+ IA++ S ++Y+ + +G+G R L + G
Sbjct: 233 AVISGGQMATGAAFSPDGKRIAYSLAEGE----SAQVYVANADGSGARALTDT-PYGLNT 287
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
P +SPDGK I F S+ GG +P +++ + DG+ ++RLT + TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG-------SP-------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 672 AWGPRFIRPVDVEEVKNEQCAFE 694
W PR + V ++E+ AF+
Sbjct: 334 DWSPR--GDLIVFTARDERNAFD 354
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 300 PQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF 359
PQ +++ + ++R+T G + TP SP I R +++ +LF V +
Sbjct: 308 PQVYIMNADGTGVRRLTFQGNYNQTPDWSP-RGDLIVFTARDERNAF---DLF-TVSVET 362
Query: 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIK------ 408
++TR + + P SP+ + + R G ++ DGNNQL L K
Sbjct: 363 GKVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTADGNNQLPLRTEKGTYQTP 422
Query: 409 --SPLP 412
SPLP
Sbjct: 423 DWSPLP 428
>sp|Q3SP21|TOLB_NITWN Protein TolB OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=tolB PE=3 SV=1
Length = 450
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP + ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 223 PRFSPSTQEVTYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFAPDGQRIIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDGARICFESDRGGKPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG G R++ G S + WSP G++IAF G G F + +I P+G+G
Sbjct: 333 YVMGATGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIIKPDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGG 630
R L ++G N P F+P+G+ ++F D GG
Sbjct: 386 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG 415
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S SS+ + + + D DG + VR LT P SP + + + G +Y+ +
Sbjct: 190 SGSSQRRVKRLALMDQDGAN-VRYLTRGADLVITPRFSPSTQEVTYMEFGQGDPRVYLFN 248
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
E G+ + P ++PDG+ I + + G+ ++++ +L
Sbjct: 249 IETGQ---REIVGNFPGMSFSPRFAPDGQRIIMSLQQ----GGNSNLFVMDLRSKSTTRL 301
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + P +SPDG I F SD GG +P +I+ + G +R+
Sbjct: 302 TDTPAI--DTSPSYSPDGARICFESDRGG------------KP--QIYVMGATGGGAQRI 345
Query: 662 TQNSFEDGTPAWGPR 676
+ TP W PR
Sbjct: 346 SFGEGSYSTPVWSPR 360
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ +F+P +P + I + S+ ++L + TR +P
Sbjct: 261 PGM-SFSPRFAPDGQRIIMSLQQGGNSNLFVMDL------RSKSTTRLTDTPAIDTSPSY 313
Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
SPD +R+ + RGG + ++ IS S P +SP+GD IAF +
Sbjct: 314 SPDGARICFESDRGGKPQI-----YVMGATGGGAQRISFGEGSYSTPVWSPRGDYIAFTK 368
Query: 438 FPG----VYVVNSDGSNRR 452
G + ++ DGS R
Sbjct: 369 QGGGQFSIGIIKPDGSGER 387
>sp|Q5P4Z6|TOLB_AROAE Protein TolB OS=Aromatoleum aromaticum (strain EbN1) GN=tolB PE=3
SV=1
Length = 426
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 48/262 (18%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYT 474
P+++P G R+A+V F P VYV ++ + +R V FK + S W P R AVV T
Sbjct: 200 PAWAPDGQRLAYVSFEAKKPVVYV-HTLATGQRHVVANFKGSNSAPTWAPDGQRLAVVLT 258
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G + + +N D S +RR+ T+ + P+ SPDG+WI F S R G
Sbjct: 259 KDG--------QSQLYVLNADG----SGLRRMATSPGIDTEPAWSPDGEWIYFSSDRGGS 306
Query: 535 KNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
+Y + A GG R+T EG ++ T SPDG +AF + R+N G F++ ++
Sbjct: 307 AQIYRIPASGGSA---QRVTFEGNYNVT-PRLSPDGRSLAFIT-RNN---GRFQVAVMD- 357
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
R+ + R P F+P+G+ I++ ++ GG G + +
Sbjct: 358 --LATRQTTILTDSSRDESPSFAPNGRMILYATESGG--------------RGVLAAVSS 401
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG +RL+ + + P+WGP
Sbjct: 402 DGRVKQRLSVQAADVREPSWGP 423
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 414 ISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPV 467
++ F+ S P+++P G R+A V +YV+N+DGS R++ T W P
Sbjct: 234 VANFKGSNSAPTWAPDGQRLAVVLTKDGQSQLYVLNADGSGLRRMATSPGIDTEPAWSPD 293
Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
E + ++S I I G SA +R+T G N P +SPDG+ + F
Sbjct: 294 GEWIYFSS------DRGGSAQIYRI---PASGGSA-QRVTFEGNYNVTPRLSPDGRSLAF 343
Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
+ G + +MD + L + D +++P+G I +A++ G
Sbjct: 344 ITRNNGRFQVAVMDLATRQTTILTDSSR----DESPSFAPNGRMILYATESGGRG 394
>sp|Q5FQB9|TOLB_GLUOX Protein TolB OS=Gluconobacter oxydans (strain 621H) GN=tolB PE=3
SV=1
Length = 453
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA---FSTVWDPVREAVVYTSG 476
P F+P D+IAF+ + P VY+ + S R+Q+ + A F+ + P +VV +
Sbjct: 220 PRFNPVRDQIAFMSYANNRPRVYLFDL-ASGRQQILGEFAGISFAPRFSPTGGSVVLS-- 276
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
A+ DI +++ A R++T +NG + P SPDG IVF S R G
Sbjct: 277 ----ATRGGGSDIFVVDLAS----RAKRQITNSNGAIDTSPCFSPDGSQIVFNSDRGGSP 328
Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
LYIM A GG R++ G WSP G+ IAF GSG F + +++P+G
Sbjct: 329 QLYIMSASGGAA---KRISYGSGQYGSPVWSPRGDLIAFT----RIGSGGFSLGVMNPDG 381
Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
TG R L Q + A F P+G+ + F
Sbjct: 382 TGERILTQGFTVDGAT---FCPNGRVLAF 407
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 14/135 (10%)
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
+F P SP + ATR S ++L K + S +P SPD
Sbjct: 261 SFAPRFSPTGGSVVLSATRGGGSDIFVVDLASRAKRQITN-----SNGAIDTSPCFSPDG 315
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP-- 439
S++ ++ RGGS + ++ IS P +SP+GD IAF
Sbjct: 316 SQIVFNSDRGGSPQ-----LYIMSASGGAAKRISYGSGQYGSPVWSPRGDLIAFTRIGSG 370
Query: 440 --GVYVVNSDGSNRR 452
+ V+N DG+ R
Sbjct: 371 GFSLGVMNPDGTGER 385
>sp|B8JD21|TOLB_ANAD2 Protein TolB OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC
BAA-258) GN=tolB PE=3 SV=1
Length = 434
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P + +T SE ++ + V DG A R+LT++
Sbjct: 239 PLGRHRNAFGGVYSPDGSRIAFTV---------SEGNVTDLWVMSADGAGA-RKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVSPDSGAINRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G HR G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRHRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGAGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>sp|Q1QHQ6|TOLB_NITHX Protein TolB OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=tolB PE=3 SV=1
Length = 450
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +FS + P + ++ +
Sbjct: 223 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFAPDGQRIIMS--- 279
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 280 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDGGRICFESDRGGRPQI 332
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG R++ G S + WSP G++IAF G G F + +I P+G+G
Sbjct: 333 YVMGATGGAA---QRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIIKPDGSG 385
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG S ++ I + G
Sbjct: 386 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGGNSGP------------SLYTIDVSGR 429
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++ F PAW P
Sbjct: 430 NELKVPTPGFAS-DPAWSP 447
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
S +++ I + + D DG + VR LT P SP + I + G +Y+ +
Sbjct: 190 SGAAQHRIKRLALMDQDGAN-VRYLTRGADLVITPRFSPSTQEITYMEFGQGDPRVYLFN 248
Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
E G+ + P ++PDG+ I + + G+ ++++ +L
Sbjct: 249 IETGQ---REIVGNFPGMSFSPRFAPDGQRIIMSLQQ----GGNSNLFVMDLRSKSTTRL 301
Query: 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661
+ + P +SPDG I F SD GG +P +I+ + G +R+
Sbjct: 302 TDTPAI--DTSPSYSPDGGRICFESDRGG------------RP--QIYVMGATGGAAQRI 345
Query: 662 TQNSFEDGTPAWGPR 676
+ TP W PR
Sbjct: 346 SFGEGSYSTPVWSPR 360
>sp|A1K2H9|TOLB_AZOSB Protein TolB OS=Azoarcus sp. (strain BH72) GN=tolB PE=3 SV=1
Length = 427
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 46/261 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNAFST-VWDP--VREAVVYT 474
P++SP G R+A+V F P +Y V++ + +RQV FK + S W P + +VV T
Sbjct: 200 PAWSPDGGRLAYVSFEAKKPIIY-VHTLATGQRQVVANFKGSNSAPAWSPDGQQLSVVLT 258
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
G + + V + DG S VRRL ++ + P+ SPDG+WI F S R G
Sbjct: 259 KDG-----------LSQLYVLNADG-SGVRRLASSSGIDTEPAWSPDGQWIYFTSDRGGS 306
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y + GG R+T + S DG +AF + R+N G F++ + +
Sbjct: 307 PQIYRIPTAGGAA---QRVTFDGTYNVTARPSADGRLLAFIT-RNN---GRFQVAV--QD 357
Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
T + I + SA R P F+P+G+ I++ +D GG G + + D
Sbjct: 358 LTTRQTTILTDSA-RDESPSFAPNGRMILYATDAGG--------------RGVLAAVSSD 402
Query: 655 GSDLKRLTQNSFEDGTPAWGP 675
G +RL+ + + PAWGP
Sbjct: 403 GRVKQRLSVQAADVREPAWGP 423
>sp|Q2IZ40|TOLB_RHOP2 Protein TolB OS=Rhodopseudomonas palustris (strain HaA2) GN=tolB
PE=3 SV=1
Length = 449
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + +F+ + P + ++ +
Sbjct: 222 PRFSPSTQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMSFAPRFSPDGQRIIMS--- 278
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPD I F S R G +
Sbjct: 279 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M A GG+ R++ G S + WSP G++IAF G G F + ++ P+G+G
Sbjct: 332 YVMPASGGQA---QRISFGDGSYSTPVWSPRGDYIAFTKQ----GGGQFAIGIMKPDGSG 384
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L ++G N P F+P+G+ ++F D GG +A P +F + + G
Sbjct: 385 ERIL----TSGFHNEGPTFAPNGRVLMFFRDPGG-NAGP-----------SLFTVDVSGR 428
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ R+ + PAW P
Sbjct: 429 NELRVPTPGYAS-DPAWSP 446
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 32/202 (15%)
Query: 480 FASESSEVD--IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F ES D + + + D DG + VR LT P SP + I + G +
Sbjct: 185 FIDESGPADRRVKRLALMDQDGAN-VRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPKV 243
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+ + E G+ + P +SPDG+ I + + G+ ++++
Sbjct: 244 YLFNIETGQ---REIVGNFPGMSFAPRFSPDGQRIIMSLQQ----GGNSNLFVMDLRSKS 296
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+L + + P +SPD I F SD GG +P +I+ + G
Sbjct: 297 TTRLTDTPAI--DTSPSYSPDAARICFESDRGG------------KP--QIYVMPASGGQ 340
Query: 658 LKRLTQNSFEDG---TPAWGPR 676
+R+ SF DG TP W PR
Sbjct: 341 AQRI---SFGDGSYSTPVWSPR 359
>sp|Q2INP9|TOLB_ANADE Protein TolB OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
GN=tolB PE=3 SV=1
Length = 434
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
DG NQ +L + +S L P++ P G I + P ++ SD + R
Sbjct: 189 DGGNQQVLLSERSILMS----------PAWRPDGREILVTSYRSGRPELWAYRFSDRAFR 238
Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
+NAF V+ P + +T SE ++ + V DG S R+LT++
Sbjct: 239 PLGRQRNAFGGVYSPDGSRIAFTV---------SEGNVTDLWVMSADG-SGARKLTSDPA 288
Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE 570
+ P+ SPDG+ I F S R+G +Y+M G +G G RLT +G ++ T WSP G+
Sbjct: 289 IDVSPTWSPDGRRIAFVSDRSGTPQIYVM---GADGSGARRLTFQGNYNQT-PQWSPRGD 344
Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDY- 628
IAF + RD F+++++ P+ + ++ Q GR N P ++P+G+ ++F +D
Sbjct: 345 LIAFTA-RDE--RKVFDVFVVAPDSGAISRITQ--DQGRTNEEPSWAPNGRLMIFRTDRN 399
Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GGI ++ G +T + PAWGP
Sbjct: 400 GGI---------------QLVVSDARGDRQTPVTSGKTDLAAPAWGP 431
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNL--YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
P+ PDG+ I+ S R+G L Y G R G +SPDG IA
Sbjct: 206 PAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRQRNAFG------GVYSPDGSRIA 259
Query: 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
F N +++++ +G+G RKL + P +SPDG+ I F SD G
Sbjct: 260 FTVSEGN----VTDLWVMSADGSGARKLTSDPAID--VSPTWSPDGRRIAFVSDRSG--- 310
Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676
TP +I+ + DGS +RLT + TP W PR
Sbjct: 311 ----TP-------QIYVMGADGSGARRLTFQGNYNQTPQWSPR 342
>sp|Q6MRB2|TOLB_BDEBA Protein TolB OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM
50701 / NCIB 9529 / HD100) GN=tolB PE=3 SV=1
Length = 461
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 58/272 (21%)
Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV---REAVVYTSG---G 477
P++SP G +IA+ + R F+NA + D R + Y G G
Sbjct: 221 PAWSPDGKKIAYTSY----------VKRVGAKFRNADMLLLDLTTGKRSLISYRQGINSG 270
Query: 478 PEFASESSEV----------DIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWI 525
F+++ + DI + +D + V ++T G N P+VSP G +
Sbjct: 271 ASFSADGKHIYLTISQGNSPDIYKMGLDG----TLVGKITNGPAGALNVEPTVSPQG-LL 325
Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585
F S R G +Y DA G + R+T ++ +WSPDG+ IAFA DN +
Sbjct: 326 SFSSDRAGRPMIYTADAAGNN---VKRITFAGVFNSSPSWSPDGKKIAFAGQSDN----N 378
Query: 586 FEMYLIHPNGTGLRKLIQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641
F++++++ +GTG+ +L + G P FSPDG+ +++TS+ G + IST
Sbjct: 379 FDIFVMNADGTGMIRLTSAKKPNGRMASNEDPSFSPDGRFVMYTSNRTGKNQIYIST--- 435
Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
+DG++ +R+T ++ P W
Sbjct: 436 -----------VDGTEERRVTNDNNNYYKPKW 456
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 38/224 (16%)
Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
A + V P VV +S + + +S E+ + + +++ VS R ++ + P+
Sbjct: 172 ALTGVEGPFLSRVVVSS--DKGSGQSKEIFTMDWDGANMEQVSNHRSISIS------PAW 223
Query: 519 SPDGKWIVFRS--TRTGYK----NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
SPDGK I + S R G K ++ ++D G+ L +G ++ ++S DG+ I
Sbjct: 224 SPDGKKIAYTSYVKRVGAKFRNADMLLLDLTTGK-RSLISYRQGI--NSGASFSADGKHI 280
Query: 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGI 631
+ N S ++Y + +GT + K I +G AG N P SP G + F+SD G
Sbjct: 281 YLTISQGN----SPDIYKMGLDGTLVGK-ITNGPAGALNVEPTVSPQGL-LSFSSDRAG- 333
Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
P+ I+ G+++KR+T + +P+W P
Sbjct: 334 --RPM-----------IYTADAAGNNVKRITFAGVFNSSPSWSP 364
>sp|Q2LRP7|TOLB_SYNAS Protein TolB OS=Syntrophus aciditrophicus (strain SB) GN=tolB PE=3
SV=2
Length = 452
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGG 477
P +SP G +AF + P ++VV+ GS +++ + W P +++ T
Sbjct: 221 PRWSPDGRYLAFSSYRDGKPDIFVVSPSGSGLKKIVSFQGLNLPGAWSPDGRSLLLT--- 277
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
S+ +I ++V VRRLT N + P SPDG+ I F S +G +
Sbjct: 278 ---LSKDGNEEIYVMDVRS----GQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQI 330
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M+A+GG+ + RLT +T WSP G IA+ GSG ++++ I +G
Sbjct: 331 YVMNADGGD---VRRLTYSGNYNTTPAWSPRGGKIAYEG---KVGSG-YQIFSIDEDGGN 383
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
+R+L + AG P +SPDG+ + F+ GG S I + + +
Sbjct: 384 VRQL--TSGAGDHEFPSWSPDGRFLTFSLRSGGRS--------------RINILNANTLE 427
Query: 658 LKRLTQNSFEDGTPAWGPRF 677
++ L +++ PAW PR
Sbjct: 428 VRTLYESTDRCLGPAWSPRL 447
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
+G L R+ P WSPDG ++AF+S RD G +++++ P+G+GL+K++
Sbjct: 204 DGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRD----GKPDIFVVSPSGSGLKKIV--- 256
Query: 606 SAGRANHP-YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664
S N P +SPDG+S++ T G EI+ + + ++RLT+N
Sbjct: 257 SFQGLNLPGAWSPDGRSLLLTLSKDGNE--------------EIYVMDVRSGQVRRLTRN 302
Query: 665 SFEDGTPAWGP 675
S D +P W P
Sbjct: 303 SAIDVSPVWSP 313
>sp|A5CBX4|TOLB_ORITB Protein TolB OS=Orientia tsutsugamushi (strain Boryong) GN=tolB
PE=3 SV=1
Length = 453
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 25/211 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P FSPK ++I +V + P V + + + N + + N FS + P ++ ++
Sbjct: 221 PVFSPKNNQILYVSYHNKIPTVRIHDLNSGNNKILASFNGITFSPRFSPDGNKILVSNSS 280
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + E+++++ +++LT N PS SPDG I F S R+G +
Sbjct: 281 TKNVTHIYEINLLT---------GKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM+ +GG + RLT P + T WSP +IAF +G F + +I +G+
Sbjct: 332 YIMNDQGG---NIKRLTSQPGAYTTPAWSPTNNYIAFTKIE----AGEFSIGVIKLDGSN 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
R + + P ++PDGK+I+F+ Y
Sbjct: 385 KRII---ATKYLVEGPSWAPDGKTIIFSRAY 412
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 30/206 (14%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
+VY S S SS I I + D DG A TNGKN+ P SP I++ S
Sbjct: 182 IVYVS-----ESNSSNRKIRRIAIMDQDG--ANHNYITNGKNHVITPVFSPKNNQILYVS 234
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+ I D G L +S +SPDG I ++ + +E+
Sbjct: 235 YHNKIPTVRIHDLNSGNNKILASFNGITFSP---RFSPDGNKILVSNSSTKNVTHIYEIN 291
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
L+ TG K + G + + P +SPDG I F SD G + +I+
Sbjct: 292 LL----TGKIKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGST--------------QIY 332
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G ++KRLT TPAW P
Sbjct: 333 IMNDQGGNIKRLTSQPGAYTTPAWSP 358
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 107/263 (40%), Gaps = 39/263 (14%)
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
H TP SP NN+ + V+ + R I + NK + ++ +P SPD
Sbjct: 217 HVITPVFSPKNNQILYVSYHNKIPTVR-IHDLNSGNNKILASFNGIT-----FSPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--- 437
+++ + LL IK S+ + PS+SP G +IAFV
Sbjct: 271 GNKILVSNSSTKNVTHIYEINLLTGKIKQLTKGQSI----NTSPSYSPDGSKIAFVSDRS 326
Query: 438 -FPGVYVVNSDGSNRRQVYFK-NAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINV 494
+Y++N G N +++ + A++T W P + +T E+ E I I +
Sbjct: 327 GSTQIYIMNDQGGNIKRLTSQPGAYTTPAWSPTNNYIAFT------KIEAGEFSIGVIKL 380
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-------RSTRTGYKNLYIMDAEGGEG 547
D + + G PS +PDGK I+F +ST T K LY +D G
Sbjct: 381 DGSNKRIIATKYLVEG-----PSWAPDGKTIIFSRAYKATKSTSTKVK-LYSVDYTGYN- 433
Query: 548 YGLHRLTEGPWSDTMCNWSPDGE 570
R + P + + NWS + E
Sbjct: 434 ---EREIQTPENASDPNWSNEYE 453
>sp|Q1GYT1|TOLB_METFK Protein TolB OS=Methylobacillus flagellatus (strain KT / ATCC 51484
/ DSM 6875) GN=tolB PE=3 SV=2
Length = 433
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 56/280 (20%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIA+V G + V +SDG N + V + S VW P + Y S F +
Sbjct: 170 RIAYVSKSGGRYALQVADSDGYNPQTVVSSAEPIISPVWSPDGTKLAYVS----FEKKKP 225
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ + S+ VS R + N K NN+ P+ SPDGK + T +Y ++A+G
Sbjct: 226 IIYVQSL-------VSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHAANSQIYSINADG 278
Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604
GL +LT DT WSPDG +I F SDR GS ++Y + +G ++
Sbjct: 279 ---TGLQQLTRTTAIDTEPTWSPDGRYIYFTSDR----GGSPQIYRMPSSGGEASRMTFE 331
Query: 605 GSAGRANHPYFSPDGKSIVFTSDYGG----------------ISAEPISTPHQYQPYGEI 648
GS P SPDGKS+ + GG +S P + P G +
Sbjct: 332 GS--YVVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVLSDGPKDESPSFAPNGRM 389
Query: 649 F-------------KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG +RL+++ + PAWGP
Sbjct: 390 LLHATRVGGRGALAAVSADGRVKQRLSESGGDVREPAWGP 429
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPS 425
VS ++P SPD +++ Y + Q L+ ++ L + F+ + S P+
Sbjct: 197 VSSAEPIISPVWSPDGTKLAYVSFE--KKKPIIYVQSLVSGQRTVLAN---FKGNNSAPA 251
Query: 426 FSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---G 476
+SP G R+A V +Y +N+DG+ +Q+ A T W P + +TS G
Sbjct: 252 WSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDRGG 311
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
P+ S S R+T G P +SPDGK + + G
Sbjct: 312 SPQIYRMPSSGGEAS-------------RMTFEGSYVVSPRLSPDGKSLAYIRRDGGQFR 358
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+ + D + G+ + L++GP D +++P+G + A+ G+ + + +G
Sbjct: 359 VALQDLQTGQ---VQVLSDGP-KDESPSFAPNGRMLLHATRVGGRGA----LAAVSADGR 410
Query: 597 GLRKLIQSGSAGRANHPYFSP 617
++L +SG G P + P
Sbjct: 411 VKQRLSESG--GDVREPAWGP 429
>sp|B3CUF6|TOLB_ORITI Protein TolB OS=Orientia tsutsugamushi (strain Ikeda) GN=tolB PE=3
SV=1
Length = 453
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 25/211 (11%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
P FSP ++I +V + P V + + + N + + N FS + P ++ ++
Sbjct: 221 PVFSPNNNQILYVSYHNKIPTVRIHDLNSGNNKILASFNGITFSPRFSPDGNKILVSNSS 280
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ + E+++++ +++LT N PS SPDG I F S R+G +
Sbjct: 281 TKNVTHIYEINLLT---------GKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQI 331
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
YIM+ +GG + RLT P + T WSP +IAF +G F + +I +G+
Sbjct: 332 YIMNDQGGN---IKRLTSQPGAYTTPAWSPTNNYIAFTKIE----AGEFSIGVIKLDGSN 384
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
R + + P ++PDGK+I+F+ Y
Sbjct: 385 KRII---ATKHLVEGPSWAPDGKTIIFSRAY 412
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 30/206 (14%)
Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRS 529
+VY S S SS+ I I + D DG A TNGKN+ P SP+ I++ S
Sbjct: 182 IVYVS-----ESNSSKGKIRRIAIMDQDG--ANHNYITNGKNHVITPVFSPNNNQILYVS 234
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+ I D G L +S +SPDG I ++ + +E+
Sbjct: 235 YHNKIPTVRIHDLNSGNNKILASFNGITFSP---RFSPDGNKILVSNSSTKNVTHIYEIN 291
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
L+ TG K + G + + P +SPDG I F SD G + +I+
Sbjct: 292 LL----TGKIKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGST--------------QIY 332
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ G ++KRLT TPAW P
Sbjct: 333 IMNDQGGNIKRLTSQPGAYTTPAWSP 358
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 39/263 (14%)
Query: 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
H TP SP NN+ + V+ + R I + NK + ++ +P SPD
Sbjct: 217 HVITPVFSPNNNQILYVSYHNKIPTVR-IHDLNSGNNKILASFNGIT-----FSPRFSPD 270
Query: 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--- 437
+++ + LL IK S+ + PS+SP G +IAFV
Sbjct: 271 GNKILVSNSSTKNVTHIYEINLLTGKIKQLTKGQSI----NTSPSYSPDGSKIAFVSDRS 326
Query: 438 -FPGVYVVNSDGSNRRQVYFK-NAFST-VWDPVREAVVYTSGGPEFASESSEVDIISINV 494
+Y++N G N +++ + A++T W P + +T E SI V
Sbjct: 327 GSTQIYIMNDQGGNIKRLTSQPGAYTTPAWSPTNNYIAFT---------KIEAGEFSIGV 377
Query: 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-------RSTRTGYKNLYIMDAEGGEG 547
+DG + +R+ PS +PDGK I+F +ST T K LY +D G
Sbjct: 378 IKLDGSN--KRIIATKHLVEGPSWAPDGKTIIFSRAYKATKSTSTKVK-LYSVDCTGYN- 433
Query: 548 YGLHRLTEGPWSDTMCNWSPDGE 570
R + P + + NWS + E
Sbjct: 434 ---EREIQTPENASDPNWSNEYE 453
>sp|Q3B584|TOLB_PELLD Protein TolB OS=Pelodictyon luteolum (strain DSM 273) GN=tolB PE=3
SV=2
Length = 436
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 38/255 (14%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
P+ SP G R+AF ++ PG+ ++N ++RR + + ++ DP + S G
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNM--ADRRISAVRQSGVSI-DPG-----WRSNGEV 262
Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
+ S E D I + DG + R++T++ + PS SPDG + F S R G ++I
Sbjct: 263 ATTLSFEGDQ-DIYLVRPDGTLS-RKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFI 320
Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599
+D G+ RLT +T +WSP G+ IA+ + N G ++ I P+G+G
Sbjct: 321 LDLGTGQ---TRRLTYNGNYNTQPSWSPGGDKIAYTTMEKN---GEINIFTIRPDGSGAT 374
Query: 600 KLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
+L S R N P +SP G IVFTS Q +++ + +G +
Sbjct: 375 RLT---SGARENESPSWSPGGDMIVFTSG--------------RQGQKKLYVMNANGDNQ 417
Query: 659 KRLTQNSFEDGTPAW 673
+RL Q E P+W
Sbjct: 418 RRLLQMEGEQMQPSW 432
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 413 DISLFRFDGSF-------------PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY 455
DI L R DG+ PSFSP G ++AFV P V++++ R++
Sbjct: 273 DIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLT 332
Query: 456 FKNAFST--VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513
+ ++T W P + + YT+ ++ E++I +I D S RLT+ + N
Sbjct: 333 YNGNYNTQPSWSPGGDKIAYTT-----MEKNGEINIFTIRPDG----SGATRLTSGAREN 383
Query: 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
PS SP G IVF S R G K LY+M+A G
Sbjct: 384 ESPSWSPGGDMIVFTSGRQGQKKLYVMNANG 414
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 52/196 (26%)
Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEW-- 571
P++SPDG + F +G L IM+ R++ S + W +GE
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNMAD------RRISAVRQSGVSIDPGWRSNGEVAT 264
Query: 572 -IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS---- 626
++F D+D +YL+ P+GT RK+ + S G P FSPDG + F S
Sbjct: 265 TLSFEGDQD--------IYLVRPDGTLSRKV--TSSRGIDLSPSFSPDGTKMAFVSARFG 314
Query: 627 -------DYGGISAEPIS------TPHQYQPYGE--------------IFKIKLDGSDLK 659
D G ++ T + P G+ IF I+ DGS
Sbjct: 315 NPQVFILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGAT 374
Query: 660 RLTQNSFEDGTPAWGP 675
RLT + E+ +P+W P
Sbjct: 375 RLTSGARENESPSWSP 390
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 57/292 (19%)
Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY 235
G +++VS R+ + +YS G +LT +PA+SP G A Y
Sbjct: 173 GSNIVFVSN-------RSGFKEIYSCAFDGGSLSQLTRSRSISLTPALSPDGTRLAFTDY 225
Query: 236 GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW---PCWVDESTLFFHRKSEEDDWI 292
G G M D +R+ V G P W + E D
Sbjct: 226 -TSGRPGLKIMNMAD----------RRISAVRQSGVSIDPGWRSNGEVATTLSFEGDQ-- 272
Query: 293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352
+Y LV + ++VT +P+ SP K V+ R + +
Sbjct: 273 DIY--------LVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNP---QVFIL 321
Query: 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP 412
DL + R ++ P SP ++ Y T + N ++ NI + P
Sbjct: 322 DLGTG---QTRRLTYNGNYNTQPSWSPGGDKIAY-------TTMEKNGEI---NIFTIRP 368
Query: 413 D------ISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV 454
D ++ + PS+SP GD I F +YV+N++G N+R++
Sbjct: 369 DGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQKKLYVMNANGDNQRRL 420
>sp|Q3APB5|TOLB_CHLCH Protein TolB OS=Chlorobium chlorochromatii (strain CaD3) GN=tolB
PE=3 SV=1
Length = 440
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 40/263 (15%)
Query: 417 FRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNRRQVYFKNAFSTVWDPVREAV 471
FR P+ SP G +AF +F P + + + G R N+ W RE
Sbjct: 207 FRSIALTPALSPDGAYLAFTDFTGGKPALAIRELATGKTTRVAKKGNSIDPAWRNSRELA 266
Query: 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTTNGKNNAFPSVSPDGKWIVFRST 530
F+ E + + +D AV+ RLT++ + P+ SPDG+ + F S
Sbjct: 267 T------TFSFEGDQELYL------LDSAGAVKQRLTSSSGIDLSPTFSPDGRKMAFVSA 314
Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
R+G +++ D G+ RLT +T WSP G+ IAF++ G +++
Sbjct: 315 RSGNPQIFVYDFSSGKS---QRLTFSGRYNTQPAWSPIGDKIAFSTWESG---GEINIFV 368
Query: 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650
I+ +G+GL +L + +G P +SPDG+ IVF S+ G+ +++
Sbjct: 369 INTDGSGLTQL--TTQSGENESPSWSPDGRMIVFASNRQGVK--------------KLYV 412
Query: 651 IKLDGSDLKRLTQNSFEDGTPAW 673
+ DG + + L E P+W
Sbjct: 413 MMADGKNQRPLLAIGGEQTQPSW 435
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
G + LY++D+ G RLT D +SPDG +AF S R SG+ ++++
Sbjct: 273 GDQELYLLDSAGAVK---QRLTSSSGIDLSPTFSPDGRKMAFVSAR----SGNPQIFVYD 325
Query: 593 PNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI--F 649
+ ++L SG R N P +SP G I F++ ++ GEI F
Sbjct: 326 FSSGKSQRLTFSG---RYNTQPAWSPIGDKIAFST---------------WESGGEINIF 367
Query: 650 KIKLDGSDLKRLTQNSFEDGTPAWGP 675
I DGS L +LT S E+ +P+W P
Sbjct: 368 VINTDGSGLTQLTTQSGENESPSWSP 393
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 95/261 (36%), Gaps = 36/261 (13%)
Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
+YS + +LT + +PA+SP G Y A + + L+T
Sbjct: 191 IYSCDFDGANVHQLTNFRSIALTPALSPDGAYLAFTDFTGGKPALAIRELAT-------- 242
Query: 258 DGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317
T RV N P W + L E D + +L G V QR+T
Sbjct: 243 GKTTRVAKKGNSIDPAWRNSRELATTFSFEGDQEL----YLLDSAGAVK------QRLTS 292
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
+P SP K V+ R S I ++D K LT ++ P
Sbjct: 293 SSGIDLSPTFSPDGRKMAFVSAR---SGNPQIFVYDFSSGKSQRLTF---SGRYNTQPAW 346
Query: 378 SPDSSRVGYHKCRGGSTREDGN--NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
SP ++ + ST E G N ++ S L ++ + PS+SP G I F
Sbjct: 347 SPIGDKIAF------STWESGGEINIFVINTDGSGLTQLTTQSGENESPSWSPDGRMIVF 400
Query: 436 VE----FPGVYVVNSDGSNRR 452
+YV+ +DG N+R
Sbjct: 401 ASNRQGVKKLYVMMADGKNQR 421
>sp|B2T077|TOLB_BURPP Protein TolB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=tolB PE=3 SV=1
Length = 430
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F++ + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLMGGRGVFATRLSYVIKTGGRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P SPDG+ I F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQGNTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>sp|Q5LNU4|TOLB_RUEPO Protein TolB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /
DSS-3) GN=tolB PE=3 SV=1
Length = 439
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
P FSP GDR+ + FP +++++ +R + ++ +F+ + P + V+++
Sbjct: 210 PRFSPTGDRVLYTSYQGGFPRIHILDVGQVQQRVLQSQDGTMSFAPRFSPDGQTVLFS-- 267
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
++ D+ ++N+ G S RLT+ PS +PDG IVF S R+G
Sbjct: 268 ----LAQGGNTDLYAMNI--ASGQST--RLTSAPSIETAPSYAPDGSRIVFESDRSGTPQ 319
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M A GGE R++ G WSP G+ IAF G F + ++ +G+
Sbjct: 320 LYVMSAAGGEA---TRISFGQGRYGTPVWSPRGDLIAFTKQ----SKGRFHIGVMRADGS 372
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L S P +SP+G+ I+FT + G S ++ + + G
Sbjct: 373 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGR-----------AALYSVDISGR 418
Query: 657 DLKRL-TQNSFEDGTPAWGP 675
+L+ + T + D P+W P
Sbjct: 419 NLRPVRTPDGGSD--PSWSP 436
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 66/240 (27%)
Query: 480 FASESSEVDI--ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
F SES D + + D DG + V+ LT + P SP G +++ S + G+ +
Sbjct: 173 FVSESGPKDQRRKRLAIMDYDGAN-VQYLTDSSSIVLAPRFSPTGDRVLYTSYQGGFPRI 231
Query: 538 YIMD---------------------------------AEGG--EGYGLH-------RLTE 555
+I+D A+GG + Y ++ RLT
Sbjct: 232 HILDVGQVQQRVLQSQDGTMSFAPRFSPDGQTVLFSLAQGGNTDLYAMNIASGQSTRLTS 291
Query: 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615
P +T +++PDG I F SDR SG+ ++Y++ G ++ S GR P +
Sbjct: 292 APSIETAPSYAPDGSRIVFESDR----SGTPQLYVMSAAGGEATRI--SFGQGRYGTPVW 345
Query: 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
SP G I FT Q + I ++ DGS+ +RL SF D P W P
Sbjct: 346 SPRGDLIAFT--------------KQSKGRFHIGVMRADGSE-ERLLTASFLDEGPTWSP 390
>sp|Q1GWC1|TOLB_SPHAL Protein TolB OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG
18877 / RB2256) GN=tolB PE=3 SV=1
Length = 454
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 42/260 (16%)
Query: 424 PSFSPKGDRIAFVEFPG------VYVVNSDGSNRRQVYFKN-AFSTVWDPVREAVVYTSG 476
P FSP +I +V + +Y V S G+ R +N F+ W P ++Y+
Sbjct: 226 PRFSPDYKKIVYVSYLNDRVRVFIYDVAS-GTQRLVTESRNPTFAPRWSPDGTQILYS-- 282
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ DI I+ + V RLTT + S SPDG+ IVF S R+G +
Sbjct: 283 ----MAVGGNTDIYRISANGGTPV----RLTTAPGIDVGGSFSPDGRKIVFESDRSGSQQ 334
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LY+M+ +G R++ G WSP G+ IAF G G F + ++ P+G
Sbjct: 335 LYVMNIDGSN---QQRISFGGGRYATPEWSPRGDLIAFT----RMGGGEFRIGVMTPSGG 387
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G+R L + + P +SP+G+ I F +TP + + ++++ L G
Sbjct: 388 GVRMLT---NGWQDEAPTWSPNGRVIQFFR----------TTPGR-EGRSSLWQVDLTGV 433
Query: 657 DLKRLTQNSFEDGT-PAWGP 675
+L+RL + +DG+ P+WGP
Sbjct: 434 NLRRLP--TPQDGSDPSWGP 451
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 28/190 (14%)
Query: 489 IISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
I + + D DG + R TNG+ A P SPD K IV+ S ++I D G
Sbjct: 200 IKRLAIMDSDGGN--HRFITNGQALALSPRFSPDYKKIVYVSYLNDRVRVFIYDVASGT- 256
Query: 548 YGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
RL + T WSPDG I ++ G+ ++Y I NG +L + +
Sbjct: 257 ---QRLVTESRNPTFAPRWSPDGTQILYSMAV----GGNTDIYRISANGGTPVRL--TTA 307
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
G FSPDG+ IVF SD G +++ + +DGS+ +R++
Sbjct: 308 PGIDVGGSFSPDGRKIVFESDRSGSQ--------------QLYVMNIDGSNQQRISFGGG 353
Query: 667 EDGTPAWGPR 676
TP W PR
Sbjct: 354 RYATPEWSPR 363
>sp|Q145B2|TOLB_BURXL Protein TolB OS=Burkholderia xenovorans (strain LB400) GN=tolB PE=3
SV=1
Length = 430
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 328 SPGNNKFIAVATRR-PTSSYR-HIELFDLVKNKFIELTRFVSPKT------HHLNPFISP 379
+ G N F++ + R P Y +L+D VK + + VSP++ H + +I
Sbjct: 94 AKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYA 153
Query: 380 D--------SSRVGYHKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428
++R+ Y GG + D + Q + SP P IS P++SP
Sbjct: 154 KLMGGRGVFATRLSYVIKTGGRYQLQISDSDGQDAHIALSSPEPIIS--------PAWSP 205
Query: 429 KGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFAS 482
G ++A+V F P VY+ + R V + N + W P + S
Sbjct: 206 DGTKVAYVSFEKKKPIVYIHDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVA------LS 259
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
+ I ++N D S +RRLT + P SPDG+ I F S R G +Y M A
Sbjct: 260 RTGNTQIFAVNADG----SGLRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSA 315
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLR 599
+G R+T +T SPDG+ +A+ S G F++Y+ G TGL
Sbjct: 316 QGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRV----GGGFKLYIQDLQGNTATGLT 371
Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
S P F+ +G+ I++ + G G + + DG +
Sbjct: 372 DTTHDES------PSFAANGQYILYATQVNG--------------RGVLAAVSTDGRTRQ 411
Query: 660 RLTQNSFEDGTPAWGP 675
L+ P+WGP
Sbjct: 412 VLSVQGGSVREPSWGP 427
>sp|B2JGA0|TOLB_BURP8 Protein TolB OS=Burkholderia phymatum (strain DSM 17167 / STM815)
GN=tolB PE=3 SV=1
Length = 430
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 153/387 (39%), Gaps = 92/387 (23%)
Query: 328 SPGNNKFIA-VATRRPTSSYR-HIELFDLVKNKFIELTRFVSPK------THHLNPFISP 379
+ G N F+A T+ P Y+ +L+D V + + VSP+ H + +I
Sbjct: 94 AKGANAFVAGSVTKLPNGQYQVRFKLYDTVNQQSLGGLELVSPEGGLRMSAHKVADYI-- 151
Query: 380 DSSRVGYHKCRGG----STR-----EDGNN-QLLLEN---------IKSPLPDISLFRFD 420
Y K GG +TR + GN QL + + + SP P IS
Sbjct: 152 ------YAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIIS----- 200
Query: 421 GSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYT 474
P++SP G ++A+V F P VY+ + R V + N + W P +
Sbjct: 201 ---PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVA 257
Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
S + I ++N D S +RRLT + PS SPDG+ I F S R G
Sbjct: 258 ------LSRTGNTQIFAVNADG----SGLRRLTQGSSIDTEPSYSPDGQSIYFTSDRGGQ 307
Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M A G G R+T +T SPDG+ +A+ S G F++Y+
Sbjct: 308 PQIYKMPASGEASGGAQRVTFTGNYNTSPRVSPDGKQLAYISRT----GGGFKLYI---- 359
Query: 595 GTGLRKLIQSGSAGRAN------HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648
+ +QSG A P F+ +G+ I++ + G G +
Sbjct: 360 -----QDLQSGVATALTDTTHDESPSFAANGQYILYATQVNG--------------RGVL 400
Query: 649 FKIKLDGSDLKRLTQNSFEDGTPAWGP 675
+ DG + L+ P+WGP
Sbjct: 401 AAVSTDGRTRQVLSVQGGSVREPSWGP 427
>sp|Q926C2|TOLB_RHIME Protein TolB OS=Rhizobium meliloti (strain 1021) GN=tolB PE=3 SV=1
Length = 436
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 209 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG IVF S R G + L
Sbjct: 266 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRIVFESDRGGKQQL 318
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 319 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 371
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 372 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 415
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ ++L Q PAW P
Sbjct: 416 N-EQLVQTQGFASDPAWSP 433
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
+ + D DG ++ R LT + P SP+ + I + S +Y++ E G+ +
Sbjct: 186 LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
P +SPDG+ + + ++ G+ +Y + +L + +A
Sbjct: 245 NF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIYTMDLRSRTTTRL--TNTAAIDT 295
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
P +SPDG IVF SD GG +++ + DGS R+ SF DG
Sbjct: 296 SPSYSPDGSRIVFESDRGGKQ--------------QLYVMGADGSGQTRI---SFGDGSY 338
Query: 670 -TPAWGPR 676
TP W PR
Sbjct: 339 STPVWSPR 346
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 38/183 (20%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP + I + ++ ++L + TR + +P
Sbjct: 247 PGM-TFAPRFSPDGQRVIMSLQQEGNANIYTMDL------RSRTTTRLTNTAAIDTSPSY 299
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD SR+ + RGG + DG+ Q IS DGS+ P +SP+G
Sbjct: 300 SPDGSRIVFESDRGGKQQLYVMGADGSGQT----------RISF--GDGSYSTPVWSPRG 347
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ DGS R + F N T W P +++ +GGP+
Sbjct: 348 DLIAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQ 406
Query: 480 FAS 482
S
Sbjct: 407 LYS 409
>sp|C5BEL8|TOLB_EDWI9 Protein TolB OS=Edwardsiella ictaluri (strain 93-146) GN=tolB PE=3
SV=1
Length = 430
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSAEPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ A+R++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAIRQVASFPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG ++L
Sbjct: 276 ASG---AIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQIYKMNINGGVAQRLT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + SPDGK +V S G I K+ L G++ ++
Sbjct: 329 WEGSQNQDAE--VSPDGKFLVMVSSSAGAQ--------------HIAKLDL-GTNATQVL 371
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 372 TDTFLDETPSIAP 384
Score = 32.7 bits (73), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS 382
+PA SP +K V S R + + N I + S H+ +P SPD S
Sbjct: 203 MSPAWSPDGSKLAYVTFE----SGRSALVIQTLSNGAIR--QVASFPRHNGSPAFSPDGS 256
Query: 383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVY 442
++ + + GS N +++ + ++ R + + P++ P +AF
Sbjct: 257 KLAFALSKTGSL-----NLYVMDLASGAIRQVTDGRSNNTEPTWFPDSQNLAF------- 304
Query: 443 VVNSDGSNRRQVYFKN-----AFSTVWDPVREAVVYTSGGPEF----ASESSEVDIISIN 493
SD + R Q+Y N A W+ + S +F +S + I ++
Sbjct: 305 --TSDQAGRPQIYKMNINGGVAQRLTWEGSQNQDAEVSPDGKFLVMVSSSAGAQHIAKLD 362
Query: 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
+ G +A + LT + PS++P+G +++ ST+ L ++ +G
Sbjct: 363 L----GTNATQVLTDTFLDET-PSIAPNGTMVIYSSTQGLGSVLQLVSIDG 408
>sp|Q492W9|TOLB_BLOPB Protein TolB OS=Blochmannia pennsylvanicus (strain BPEN) GN=tolB
PE=3 SV=1
Length = 453
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKN--AFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +P +Y+ + DG N+ + S W P + + Y + FAS
Sbjct: 184 RIAYVLRIHNDHYPYELYISDYDGHNQISICRSTEPLMSPAWSPDGKKIAYVT----FAS 239
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
SE+ I ++N V+ + ++ G N A PS SPD K + F ++TG NLYIMD
Sbjct: 240 GHSELVIQALNTGLVNNI-----VSFPGHNGA-PSFSPDCKKLAFSLSKTGSLNLYIMDL 293
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
E GE + +LT+ ++T +W PD + IA+ SD+ GS ++Y I+ T +++L
Sbjct: 294 ESGE---ITQLTKNRNNNTEPSWFPDNQNIAYTSDQ----GGSPQIYKINVKTTEIQRLS 346
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
++ + +P S DG I+ + + G
Sbjct: 347 WLHTSNQ--NPNVSSDGTFIIMVNRHQG 372
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
LYI D +G + R TE S WSPDG+ IA+ + SG E+ +I T
Sbjct: 200 LYISDYDGHNQISICRSTEPLMSPA---WSPDGKKIAYVTF----ASGHSEL-VIQALNT 251
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFT-SDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
GL I S G P FSPD K + F+ S G ++ ++ + L+
Sbjct: 252 GLVNNIVSF-PGHNGAPSFSPDCKKLAFSLSKTGSLN---------------LYIMDLES 295
Query: 656 SDLKRLTQNSFEDGTPAWGP 675
++ +LT+N + P+W P
Sbjct: 296 GEITQLTKNRNNNTEPSWFP 315
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
++P SPD ++ Y T G+++L+++ + + L + I F PSFSP
Sbjct: 221 MSPAWSPDGKKIAY------VTFASGHSELVIQALNTGLVNNIVSFPGHNGAPSFSPDCK 274
Query: 432 RIAF----VEFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
++AF +Y+++ + Q+ +T W P + + YTS G P+
Sbjct: 275 KLAFSLSKTGSLNLYIMDLESGEITQLTKNRNNNTEPSWFPDNQNIAYTSDQGGSPQ--- 331
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
I INV + ++RL+ +N P+VS DG +I+ + G +N+ ++
Sbjct: 332 ------IYKINVKTTE----IQRLSWLHTSNQNPNVSSDGTFIIMVNRHQGKQNIAKLNL 381
Query: 543 EGGE 546
G+
Sbjct: 382 LTGQ 385
>sp|Q82XN9|TOLB_NITEU Protein TolB OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=tolB PE=3 SV=1
Length = 425
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 432 RIAFVEFPG----VYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
RIAFV G + V + DG N R + Y + S W P + YTS F +
Sbjct: 161 RIAFVRKQGSQYALQVSDYDGFNARSLIEYTEPIISPAWSPDGSRIAYTS----FEKKKP 216
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
V + ++ + V+ + G N+A P+ SPDG + T G +Y+++A+G
Sbjct: 217 VVYVQTLATRERKAVANFK-----GSNSA-PAWSPDGSKLAVVLTLHGGSQIYLINADGS 270
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
GL R+++ P DT ++SPDG W+ F SDR GS ++Y + +G ++ G
Sbjct: 271 ---GLQRISQSPGIDTEPSFSPDGRWLMFTSDR----GGSPQIYRMPVSGGVAERMTFEG 323
Query: 606 SAGRANHPYFSPDGKSIVFTSDYGG 630
+ P++SPDGK V+ G
Sbjct: 324 DYNVS--PHYSPDGKRFVYIHRNAG 346
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 89/309 (28%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD SR+ Y ++ E + ++ + + ++ F+ S P++SP G
Sbjct: 195 ISPAWSPDGSRIAY------TSFEKKKPVVYVQTLATRERKAVANFKGSNSAPAWSPDGS 248
Query: 432 RIAFV-EFPG---VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
++A V G +Y++N+DGS +++ S+S +
Sbjct: 249 KLAVVLTLHGGSQIYLINADGSGLQRI---------------------------SQSPGI 281
Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
D PS SPDG+W++F S R G +Y M GG
Sbjct: 282 D-------------------------TEPSFSPDGRWLMFTSDRGGSPQIYRMPVSGGVA 316
Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
R+T EG + + ++SPDG+ + + +G F + + + ++ L S
Sbjct: 317 ---ERMTFEGDY-NVSPHYSPDGKRFVYI----HRNAGRFNVAIQDLSTRQMQLLTDSNF 368
Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
P FSP+ + I++T++ GG G + + DG RL+Q +
Sbjct: 369 ---DESPSFSPNNRMILYTTEIGG--------------RGILSTVSSDGQAKSRLSQEAG 411
Query: 667 EDGTPAWGP 675
WGP
Sbjct: 412 NIREAVWGP 420
>sp|Q11DI2|TOLB_MESSB Protein TolB OS=Mesorhizobium sp. (strain BNC1) GN=tolB PE=3 SV=1
Length = 439
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 39/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV---YFKNAFSTVWDPVREAVVYTSG 476
PSFSP+ I +V F P VY++ + R V + +F++ ++PV + ++ +
Sbjct: 210 PSFSPQRQEITYVSFEGGQPQVYLLQIETGQRELVGNNFPTMSFASRFNPVGDKIIMSLL 269
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
+ S +D+ + RLT + PS SPDG +VF S R G
Sbjct: 270 RTDGNSNIYTMDLKT---------RTTARLTDTNAIDTSPSYSPDGNKVVFTSDRGGRAQ 320
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
+Y+M+A+G R++ G + + WSP G+ IAF G F++ ++ +G+
Sbjct: 321 IYVMNADGSNP---QRISFGDGTYSEPVWSPRGDLIAFTKQ----SGGQFQIGIMRTDGS 373
Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
G R L + + P +SP+G+ I+F G +A P +++ I L G
Sbjct: 374 GERIL---STGFQIEGPTWSPNGRVIMFFRQDAG-AAGP-----------KLYSIDLTGR 418
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + +F PAW P
Sbjct: 419 NEQLIPTPNFAS-DPAWSP 436
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIM 540
S S E + + + D DG A R T+G++ PS SP + I + S G +Y++
Sbjct: 177 SGSKENRVKRLAIMDQDG--ANYRALTDGRSIVLKPSFSPQRQEITYVSFEGGQPQVYLL 234
Query: 541 DAEGGEGYGLHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
E G+ R G TM ++P G+ I + R + S + M L
Sbjct: 235 QIETGQ-----RELVGNNFPTMSFASRFNPVGDKIIMSLLRTDGNSNIYTMDLKTRTTAR 289
Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
L + + P +SPDG +VFTSD GG +I+ + DGS+
Sbjct: 290 L-----TDTNAIDTSPSYSPDGNKVVFTSDRGG--------------RAQIYVMNADGSN 330
Query: 658 LKRLTQNSFEDGT---PAWGPR 676
+R+ SF DGT P W PR
Sbjct: 331 PQRI---SFGDGTYSEPVWSPR 349
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS 381
+F +P +K I R T +I DL K R +P SPD
Sbjct: 252 SFASRFNPVGDKIIMSLLR--TDGNSNIYTMDL---KTRTTARLTDTNAIDTSPSYSPDG 306
Query: 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKGDRIAFVEFP 439
++V + RGG Q+ + N P F DG++ P +SP+GD IAF +
Sbjct: 307 NKVVFTSDRGGRA------QIYVMNADGSNPQRISFG-DGTYSEPVWSPRGDLIAFTKQS 359
Query: 440 G----VYVVNSDGSNRR 452
G + ++ +DGS R
Sbjct: 360 GGQFQIGIMRTDGSGER 376
>sp|A6UCS7|TOLB_SINMW Protein TolB OS=Sinorhizobium medicae (strain WSM419) GN=tolB PE=3
SV=1
Length = 436
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 41/259 (15%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++ F P VY++ + R V + F+ + P + V+ +
Sbjct: 209 PRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPRFSPDGQRVIMS--- 265
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ +I ++++ RLT + PS SPDG +VF S R G + L
Sbjct: 266 ---LQQEGNANIYTMDLRS----RTTTRLTNTAAIDTSPSYSPDGSRVVFESDRGGRQQL 318
Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
Y+M G +G G R++ G S + WSP G+ IAF G F + ++ P+G+G
Sbjct: 319 YVM---GADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQ----SGGKFSIGVMKPDGSG 371
Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
R L + G N P ++P+G+ ++F G +++ I L G
Sbjct: 372 ERIL----TTGFHNEGPTWAPNGRVLMFFRQNAGAGGP------------QLYSIDLTGY 415
Query: 657 DLKRLTQNSFEDGTPAWGP 675
+ + + F PAW P
Sbjct: 416 NEQLVPTQGFAS-DPAWSP 433
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 471 VVYTS-GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529
+VY + GP+ A + + + D DG ++ R LT + P SP+ + I + S
Sbjct: 170 IVYVAESGPKNARQRQ------LAIMDQDGANS-RALTNSNDIVLTPRFSPNRQEITYMS 222
Query: 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
+Y++ E G+ + P +SPDG+ + + ++ G+ +Y
Sbjct: 223 FENQQPRVYLLQLETGQREVVGNF---PGMTFAPRFSPDGQRVIMSLQQE----GNANIY 275
Query: 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649
+ +L + +A P +SPDG +VF SD GG +++
Sbjct: 276 TMDLRSRTTTRL--TNTAAIDTSPSYSPDGSRVVFESDRGGRQ--------------QLY 319
Query: 650 KIKLDGSDLKRLTQNSFEDG---TPAWGPR 676
+ DGS R+ SF DG TP W PR
Sbjct: 320 VMGADGSGQTRI---SFGDGSYSTPVWSPR 346
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 38/183 (20%)
Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
PG+ F P SP + I + ++ ++L + TR + +P
Sbjct: 247 PGM-TFAPRFSPDGQRVIMSLQQEGNANIYTMDL------RSRTTTRLTNTAAIDTSPSY 299
Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSF--PSFSPKG 430
SPD SRV + RGG + DG+ Q + DGS+ P +SP+G
Sbjct: 300 SPDGSRVVFESDRGGRQQLYVMGADGSGQTRISF------------GDGSYSTPVWSPRG 347
Query: 431 DRIAFVEFPG----VYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY-----TSGGPE 479
D IAF + G + V+ DGS R + F N T W P +++ +GGP+
Sbjct: 348 DLIAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPT-WAPNGRVLMFFRQNAGAGGPQ 406
Query: 480 FAS 482
S
Sbjct: 407 LYS 409
>sp|Q89ED5|TOLB_BRAJA Protein TolB OS=Bradyrhizobium japonicum (strain USDA 110) GN=tolB
PE=3 SV=2
Length = 454
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 43/262 (16%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
P FSP I ++EF P VY+ N + R V + F+ + P + V+ +
Sbjct: 218 PRFSPNSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPRFSPDGQRVIMS--- 274
Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
+ ++ +++ + RLT + PS SPDG I F S R G +
Sbjct: 275 ---LQQGGNSNLFVMDLRS----RSTTRLTDTPAIDTSPSYSPDGTRICFESDRGGRSQI 327
Query: 538 YIMDAEGGEGYGL---HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
Y+M A GG + T +S + WSP G++IAF G G F + ++ P+
Sbjct: 328 YVMAAGGGAAQRISFSKDDTNATYSTPV--WSPRGDYIAFTRQ----GGGQFSIGVMKPD 381
Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
G+G R L ++G N P FSP+G+ ++F D GG S P ++ + +
Sbjct: 382 GSGERLL----TSGFHNEGPTFSPNGRVLMFFRDPGG-SGGP-----------SLYSVDI 425
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
G + ++ F PAW P
Sbjct: 426 SGRNELKVPTPGFAS-DPAWSP 446
>sp|Q474K8|TOLB_CUPPJ Protein TolB OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=tolB PE=3 SV=1
Length = 450
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 39/289 (13%)
Query: 394 TREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEF----PGVYVVNSDG 448
+R G QLL+ + ++L + PS+SP G R+A+V F P VYV +
Sbjct: 191 SRVGGRYQLLISDSDGQNSQVALTSNEPIISPSWSPDGRRVAYVSFEAKKPVVYVHDLAT 250
Query: 449 SNRRQVYFKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506
R V + ++ W P + + S + +N D S +RRL
Sbjct: 251 GKRTLVSNQKGNNSAPSWSPDGQHLAVA------LSRDGNTQVYQVNADG----SGIRRL 300
Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
T + + P SPDGK I F S R G +Y M A G E R+T + S
Sbjct: 301 TRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAGGEEAGSAQRVTFKGSYNVSPRIS 360
Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
PDG+++A+ + SG F++ L + L + + P F+ +GK I++ +
Sbjct: 361 PDGKYLAYITR-----SGGFKLQLQDLTNGDVTSLTDTSN---DEAPSFAANGKYILYAT 412
Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
GG S + + DG + L+ S + P+WGP
Sbjct: 413 RVGGRSV--------------LAAVSTDGRTRQVLSLQSGDVREPSWGP 447
>sp|Q5PBH8|TOLB_ANAMM Protein TolB OS=Anaplasma marginale (strain St. Maries) GN=tolB
PE=3 SV=1
Length = 441
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 42/250 (16%)
Query: 422 SFPSFSPKGDRIAFVEFP--GVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
S P FSP + ++ + G VV D + +ST VR + P
Sbjct: 207 STPRFSPDARNLVYMSYAKSGGSVVLHD--------LETGYSTALGGVRG----VNSSPR 254
Query: 480 FA--------SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531
F+ SES++ ++D G S RLT + N S SPD K IVF S R
Sbjct: 255 FSPDGRHVLLSESAQGSTNIYSIDLKSGKST--RLTNDRSINTSASYSPDKKSIVFNSDR 312
Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591
+G LY+M+A+G R++ G + WSP G+WIAF SF + ++
Sbjct: 313 SGRPQLYVMNADGTN---QRRISSGKGGYSAPAWSPRGDWIAFTKTEGK----SFHVGVM 365
Query: 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651
P+G+G R L + + P +SP+G+ I+FT +P S H ++ + +
Sbjct: 366 KPDGSGERLLAK---GYMVDSPSWSPNGRVILFTQQ------DPPSATHPFRS--RLVTV 414
Query: 652 KLDGSDLKRL 661
+ G++ + L
Sbjct: 415 DITGTNTQIL 424
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
I + D DG + + +T G+ + P SPD + +V+ S ++ + D E G L
Sbjct: 186 IAIMDQDGANNIY-ITGRGEFVSTPRFSPDARNLVYMSYAKSGGSVVLHDLETGYSTALG 244
Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
+ ++ +SPDG + + GS +Y I +L S +
Sbjct: 245 GVRG---VNSSPRFSPDGRHVLLSES----AQGSTNIYSIDLKSGKSTRLTNDRSINTS- 296
Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
+SPD KSIVF SD G +P +++ + DG++ +R++ P
Sbjct: 297 -ASYSPDKKSIVFNSDRSG------------RP--QLYVMNADGTNQRRISSGKGGYSAP 341
Query: 672 AWGPR 676
AW PR
Sbjct: 342 AWSPR 346
>sp|A4W889|TOLB_ENT38 Protein TolB OS=Enterobacter sp. (strain 638) GN=tolB PE=3 SV=1
Length = 430
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWTPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + I +++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVIQTLSN------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDV 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T+G ++T W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNVNGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630
GS + S DGK++V S GG
Sbjct: 329 WEGSQNQDAD--VSSDGKTMVMVSSAGG 354
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P +PD S++ Y T E G + L+++ + + + ++ F P+FSP G
Sbjct: 203 MSPAWTPDGSKLAY------VTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDVGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +NV+ +R+T G N VS DGK +V S+ G +++ D G
Sbjct: 311 RPQVYKVNVNG----GTPQRITWEGSQNQDADVSSDGKTMVMVSSAGGQQHIAKQDLVTG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>sp|B5XZC1|TOLB_KLEP3 Protein TolB OS=Klebsiella pneumoniae (strain 342) GN=tolB PE=3
SV=1
Length = 430
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
RIA+V +FP + V + DG N+ V+ + S W P + Y + F S
Sbjct: 166 RIAYVVQKNGGQFPYELRVSDYDGYNQFLVHRSSQPLMSPAWSPDGSKLAYVT----FES 221
Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
S + + ++ AVR++ + ++N P+ SPDG + F ++TG NLY+MD
Sbjct: 222 GRSALVVQTL------ANGAVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 275
Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
G+ + ++T G ++T +W PD + +AF SD+ +G ++Y ++ NG +++
Sbjct: 276 GSGQ---IRQVTNGRSNNTEPSWFPDSQNLAFTSDQ----AGRPQVYKVNINGGTPQRIT 328
Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
GS + S DGK++V S GG Q+ I K L+ ++ L+
Sbjct: 329 WEGS--QNQDADVSADGKTMVMVSSAGG---------QQH-----IAKQDLEAGGVQVLS 372
Query: 663 QNSFEDGTPAWGP 675
++F D TP+ P
Sbjct: 373 -STFLDETPSLAP 384
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 33/252 (13%)
Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGD 431
++P SPD S++ Y T E G + L+++ + + + I+ F P+FSP G
Sbjct: 203 MSPAWSPDGSKLAY------VTFESGRSALVVQTLANGAVRQIASFPQHNGAPAFSPDGS 256
Query: 432 RIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
++AF +YV++ RQV + +T W P + + +TS ++
Sbjct: 257 KLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTS------DQAG 310
Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
+ +N++ +R+T G N VS DGK +V S+ G +++ D E G
Sbjct: 311 RPQVYKVNING----GTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAG 366
Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
G+ L+ + D + +P+G + ++S + G GS + L+ +G +L
Sbjct: 367 ---GVQVLSS-TFLDETPSLAPNGTMVIYSSSQ---GMGSV-LNLVSTDGRFKARL--PA 416
Query: 606 SAGRANHPYFSP 617
+ G+ P +SP
Sbjct: 417 TDGQVKSPAWSP 428
>sp|Q2Y5H0|TOLB_NITMU Protein TolB OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=tolB PE=3 SV=2
Length = 437
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 61/270 (22%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTS 475
P++SP G R+A+V F P VYV R+ V F+ + S W P + AVV +
Sbjct: 206 PAWSPDGTRLAYVSFENKKPVVYVQTLATRTRKAVANFRGSNSAPAWSPDGRKLAVVLSV 265
Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
G I IN D ++RLT + + PS SPDG++I+F S R G
Sbjct: 266 MGGS--------QIFLINSDG----GGLQRLTQSSGIDTEPSFSPDGRYIIFTSDRGGSP 313
Query: 536 NLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
+Y M GG RLT EG + + +SPDG+ F IH +
Sbjct: 314 QIYRMPVTGGVSKVAERLTFEGSY-NVSPRYSPDGKGFTF----------------IHRS 356
Query: 595 GTGLRKLIQSGSAGRA---------NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645
G IQ + G+ P F+P+G+ +++ ++ G
Sbjct: 357 GDRFNVAIQDFATGQVRLLTDSRFDESPSFAPNGRMVLYATEIRG--------------R 402
Query: 646 GEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
G + + DG ++L+ + + PAWGP
Sbjct: 403 GILSAVSSDGRTRQQLSTQTGDIREPAWGP 432
>sp|Q8Y1F5|TOLB_RALSO Protein TolB OS=Ralstonia solanacearum (strain GMI1000) GN=tolB
PE=3 SV=1
Length = 432
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 110/262 (41%), Gaps = 45/262 (17%)
Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYFK---NAFSTVWDPVREAVVYTSG 476
P++SP G ++A+V F P VYV + S RR V N + W P V
Sbjct: 203 PAWSPDGTKVAYVSFESRKPVVYVHDLI-SGRRAVISNQKGNNSAPAWSPDGRRVAVA-- 259
Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
S I +N D S +RRLT + + PS SPDG+ I F S R G
Sbjct: 260 ----LSRDGNTQIYQVNADG----SGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQ 311
Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY---LIHP 593
+Y M EG + R+T +T SPDG+ +A+ S G+F++Y L +
Sbjct: 312 IYRMPTEGEDAGSAQRVTFKGGYNTSPRVSPDGKLLAYISRV----GGAFKLYVQDLSNG 367
Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
+ TGL S P F+ +GK I++ + GG S + +
Sbjct: 368 DVTGLTDTSYDES------PSFAANGKFILYATRVGGRSV--------------LAAVST 407
Query: 654 DGSDLKRLTQNSFEDGTPAWGP 675
DG + L+ + PAWGP
Sbjct: 408 DGRTRQILSLQAGTVREPAWGP 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,934,956
Number of Sequences: 539616
Number of extensions: 13935935
Number of successful extensions: 32645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 28933
Number of HSP's gapped (non-prelim): 1397
length of query: 721
length of database: 191,569,459
effective HSP length: 125
effective length of query: 596
effective length of database: 124,117,459
effective search space: 73974005564
effective search space used: 73974005564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)