Query 004971
Match_columns 721
No_of_seqs 469 out of 4082
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 15:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4946 Uncharacterized protei 100.0 5.4E-34 1.2E-38 278.9 38.8 452 26-630 47-511 (668)
2 COG4946 Uncharacterized protei 100.0 1.4E-24 3E-29 213.2 39.1 431 171-684 45-512 (668)
3 PRK01029 tolB translocation pr 99.9 2.7E-25 5.9E-30 236.9 33.2 267 381-677 146-426 (428)
4 PRK03629 tolB translocation pr 99.9 6.1E-25 1.3E-29 235.5 34.3 262 333-676 164-428 (429)
5 PRK05137 tolB translocation pr 99.9 3.8E-25 8.3E-30 238.7 32.1 263 381-677 165-434 (435)
6 KOG0318 WD40 repeat stress pro 99.9 1E-22 2.2E-27 202.9 45.3 482 26-630 27-595 (603)
7 PRK02889 tolB translocation pr 99.9 1.3E-24 2.8E-29 233.3 32.5 256 382-677 164-426 (427)
8 PRK04922 tolB translocation pr 99.9 5.5E-24 1.2E-28 229.3 32.4 243 400-676 184-433 (433)
9 PRK04792 tolB translocation pr 99.9 7.5E-24 1.6E-28 227.8 33.2 258 382-676 183-447 (448)
10 PRK01029 tolB translocation pr 99.9 1E-23 2.2E-28 224.9 32.2 263 331-619 145-426 (428)
11 PRK04043 tolB translocation pr 99.9 1.7E-23 3.7E-28 221.4 31.9 242 400-673 169-419 (419)
12 PRK00178 tolB translocation pr 99.9 2.6E-23 5.6E-28 225.0 32.7 243 401-677 180-429 (430)
13 PRK01742 tolB translocation pr 99.9 7.3E-23 1.6E-27 220.1 33.2 257 332-677 168-427 (429)
14 PRK05137 tolB translocation pr 99.9 8.3E-23 1.8E-27 220.5 31.5 258 333-617 166-432 (435)
15 PRK03629 tolB translocation pr 99.9 6E-22 1.3E-26 212.3 33.7 261 278-617 164-427 (429)
16 PRK04922 tolB translocation pr 99.9 3.2E-22 6.9E-27 215.6 31.4 256 333-617 168-432 (433)
17 PRK02889 tolB translocation pr 99.9 3.8E-22 8.2E-27 214.3 31.3 253 334-617 165-424 (427)
18 KOG0271 Notchless-like WD40 re 99.9 5.3E-23 1.1E-27 197.1 20.3 305 315-678 111-464 (480)
19 PRK04792 tolB translocation pr 99.9 9.1E-22 2E-26 211.7 32.3 255 334-617 184-446 (448)
20 PRK04043 tolB translocation pr 99.9 1.2E-21 2.7E-26 207.2 28.1 258 30-377 155-419 (419)
21 PRK00178 tolB translocation pr 99.9 3.2E-21 6.9E-26 208.7 31.4 256 333-617 163-427 (430)
22 KOG0318 WD40 repeat stress pro 99.9 7.5E-20 1.6E-24 182.6 37.5 435 171-675 27-583 (603)
23 KOG0271 Notchless-like WD40 re 99.9 2.4E-22 5.2E-27 192.6 18.7 305 272-629 121-473 (480)
24 KOG0291 WD40-repeat-containing 99.9 2E-19 4.4E-24 186.7 41.4 415 171-676 64-531 (893)
25 TIGR02800 propeller_TolB tol-p 99.9 2.1E-20 4.5E-25 202.3 33.6 262 331-674 154-417 (417)
26 KOG0291 WD40-repeat-containing 99.9 4.5E-18 9.8E-23 176.8 41.3 436 171-687 23-503 (893)
27 COG0823 TolB Periplasmic compo 99.9 1.9E-19 4.2E-24 188.6 27.5 243 400-676 173-424 (425)
28 PRK01742 tolB translocation pr 99.9 4.3E-19 9.3E-24 191.0 31.0 257 176-521 168-426 (429)
29 TIGR02800 propeller_TolB tol-p 99.8 1.9E-17 4.1E-22 179.2 32.9 260 278-616 156-417 (417)
30 KOG0315 G-protein beta subunit 99.8 1.6E-17 3.4E-22 151.2 24.2 267 344-662 17-296 (311)
31 KOG0272 U4/U6 small nuclear ri 99.8 1.2E-18 2.7E-23 169.7 18.2 271 321-631 177-454 (459)
32 KOG0315 G-protein beta subunit 99.8 2.8E-17 6E-22 149.6 23.1 272 288-602 18-296 (311)
33 KOG0272 U4/U6 small nuclear ri 99.8 1.5E-17 3.2E-22 162.3 20.3 269 272-592 181-458 (459)
34 PF00930 DPPIV_N: Dipeptidyl p 99.8 5.2E-16 1.1E-20 162.6 33.6 227 373-630 104-350 (353)
35 COG0823 TolB Periplasmic compo 99.8 5.6E-17 1.2E-21 170.1 25.7 248 343-617 169-423 (425)
36 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-15 3.2E-20 156.6 35.3 278 346-675 10-300 (300)
37 KOG0286 G-protein beta subunit 99.8 4.8E-16 1E-20 144.9 25.3 278 313-630 49-338 (343)
38 cd00200 WD40 WD40 domain, foun 99.8 5.1E-16 1.1E-20 157.8 27.6 271 317-629 7-283 (289)
39 PF14583 Pectate_lyase22: Olig 99.7 4.1E-15 9E-20 148.9 30.7 305 311-654 22-383 (386)
40 KOG0273 Beta-transducin family 99.7 1.7E-15 3.7E-20 149.9 24.8 266 320-629 236-515 (524)
41 PF14583 Pectate_lyase22: Olig 99.7 7.4E-15 1.6E-19 147.1 29.4 348 42-543 9-383 (386)
42 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.3E-14 5E-19 147.6 34.1 256 321-617 32-300 (300)
43 KOG0279 G protein beta subunit 99.7 4.3E-15 9.4E-20 137.8 22.7 276 317-630 13-306 (315)
44 KOG0273 Beta-transducin family 99.7 4.9E-15 1.1E-19 146.7 24.3 302 317-676 176-504 (524)
45 KOG4497 Uncharacterized conser 99.7 2E-15 4.3E-20 142.8 20.0 351 221-629 14-424 (447)
46 KOG0319 WD40-repeat-containing 99.7 1.1E-13 2.3E-18 144.6 34.1 430 171-678 28-602 (775)
47 PF00930 DPPIV_N: Dipeptidyl p 99.7 5.6E-15 1.2E-19 154.8 24.9 278 378-677 1-339 (353)
48 KOG1407 WD40 repeat protein [F 99.7 8.3E-15 1.8E-19 134.6 22.5 273 318-630 19-295 (313)
49 KOG0286 G-protein beta subunit 99.7 1.4E-14 3.1E-19 135.2 24.4 266 366-682 52-332 (343)
50 KOG0293 WD40 repeat-containing 99.7 1.8E-15 3.8E-20 147.2 18.1 274 316-630 221-505 (519)
51 KOG0293 WD40 repeat-containing 99.7 1.4E-15 3E-20 147.9 16.7 268 366-684 221-504 (519)
52 COG2706 3-carboxymuconate cycl 99.7 4.9E-13 1.1E-17 129.8 33.3 285 346-663 15-332 (346)
53 KOG0279 G protein beta subunit 99.7 1.8E-14 3.8E-19 133.8 22.4 193 421-658 66-266 (315)
54 cd00200 WD40 WD40 domain, foun 99.7 3.4E-14 7.3E-19 144.3 26.2 270 271-592 14-289 (289)
55 KOG2096 WD40 repeat protein [G 99.7 3.5E-14 7.5E-19 133.9 22.7 282 316-629 83-395 (420)
56 COG2706 3-carboxymuconate cycl 99.6 7.9E-13 1.7E-17 128.4 32.4 262 319-603 39-332 (346)
57 KOG1446 Histone H3 (Lys4) meth 99.6 3.6E-13 7.7E-18 127.8 28.5 273 319-629 14-295 (311)
58 KOG0266 WD40 repeat-containing 99.6 4.7E-14 1E-18 152.5 25.6 265 371-682 161-441 (456)
59 KOG0263 Transcription initiati 99.6 7.3E-15 1.6E-19 154.8 17.2 207 311-595 443-650 (707)
60 PRK11028 6-phosphogluconolacto 99.6 1.5E-12 3.3E-17 135.8 34.8 260 346-629 11-295 (330)
61 PRK11028 6-phosphogluconolacto 99.6 1.8E-12 3.9E-17 135.3 35.0 280 287-601 9-313 (330)
62 KOG0319 WD40-repeat-containing 99.6 1.5E-12 3.3E-17 136.2 33.3 451 45-629 130-611 (775)
63 KOG0263 Transcription initiati 99.6 8.4E-15 1.8E-19 154.3 16.7 186 420-630 453-642 (707)
64 KOG0266 WD40 repeat-containing 99.6 8.3E-14 1.8E-18 150.5 24.7 271 321-629 161-444 (456)
65 PF10282 Lactonase: Lactonase, 99.6 1.3E-12 2.8E-17 136.5 31.4 283 348-663 14-333 (345)
66 PF10282 Lactonase: Lactonase, 99.6 1.8E-12 3.9E-17 135.4 31.2 261 319-602 36-332 (345)
67 KOG2048 WD40 repeat protein [G 99.6 1.2E-11 2.6E-16 128.5 35.2 391 197-657 91-551 (691)
68 KOG0296 Angio-associated migra 99.6 4.9E-13 1.1E-17 128.8 23.2 303 312-676 57-379 (399)
69 KOG0284 Polyadenylation factor 99.6 1.4E-14 3E-19 141.1 12.7 266 371-684 98-371 (464)
70 KOG0296 Angio-associated migra 99.6 2.9E-12 6.2E-17 123.5 28.1 312 209-579 58-390 (399)
71 KOG0265 U5 snRNP-specific prot 99.6 5.7E-13 1.2E-17 125.1 21.9 277 314-630 42-331 (338)
72 KOG1446 Histone H3 (Lys4) meth 99.6 5.1E-12 1.1E-16 120.1 27.6 265 369-683 14-293 (311)
73 KOG1407 WD40 repeat protein [F 99.6 1.3E-12 2.7E-17 120.5 22.1 265 271-579 25-294 (313)
74 KOG2055 WD40 repeat protein [G 99.6 3.2E-13 7E-18 133.7 19.3 276 320-629 214-504 (514)
75 KOG0973 Histone transcription 99.5 6.4E-13 1.4E-17 145.2 22.6 280 319-630 13-348 (942)
76 KOG0306 WD40-repeat-containing 99.5 4.6E-11 1E-15 125.3 34.8 270 316-630 370-657 (888)
77 PLN00181 protein SPA1-RELATED; 99.5 4.9E-12 1.1E-16 147.4 29.9 274 318-629 482-785 (793)
78 KOG0282 mRNA splicing factor [ 99.5 3.2E-13 6.9E-18 134.6 16.6 281 312-630 207-497 (503)
79 KOG2055 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 128.3 21.0 275 271-579 218-504 (514)
80 KOG0306 WD40-repeat-containing 99.5 4.4E-10 9.5E-15 118.1 38.1 215 424-676 418-645 (888)
81 KOG2314 Translation initiation 99.5 2.9E-11 6.3E-16 122.6 27.7 338 271-658 215-577 (698)
82 KOG0645 WD40 repeat protein [G 99.5 4.6E-11 1E-15 110.9 26.3 275 313-630 8-303 (312)
83 KOG0265 U5 snRNP-specific prot 99.5 1.3E-11 2.9E-16 116.1 22.9 273 273-591 54-335 (338)
84 KOG1539 WD repeat protein [Gen 99.5 4E-10 8.6E-15 119.9 36.5 101 516-630 540-640 (910)
85 KOG2106 Uncharacterized conser 99.5 5.6E-11 1.2E-15 119.2 28.5 348 216-626 201-615 (626)
86 KOG2048 WD40 repeat protein [G 99.5 3.4E-10 7.4E-15 117.8 34.9 426 175-675 36-527 (691)
87 PTZ00421 coronin; Provisional 99.5 5.3E-11 1.2E-15 128.4 29.8 220 420-675 77-313 (493)
88 KOG0284 Polyadenylation factor 99.5 4.6E-13 9.9E-18 130.6 12.3 271 321-631 98-374 (464)
89 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.1E-10 8.8E-15 114.5 34.3 273 347-663 27-340 (352)
90 KOG2096 WD40 repeat protein [G 99.5 7.5E-12 1.6E-16 118.4 19.9 274 271-578 91-394 (420)
91 KOG0305 Anaphase promoting com 99.5 8.4E-12 1.8E-16 129.7 22.3 270 319-630 177-454 (484)
92 KOG0295 WD40 repeat-containing 99.4 4.7E-12 1E-16 122.0 18.1 276 312-629 101-398 (406)
93 KOG0305 Anaphase promoting com 99.4 1.3E-11 2.7E-16 128.4 22.5 247 311-596 208-463 (484)
94 PTZ00420 coronin; Provisional 99.4 1.6E-10 3.4E-15 125.4 31.4 256 331-619 37-318 (568)
95 PTZ00421 coronin; Provisional 99.4 1.1E-10 2.5E-15 125.8 29.7 259 327-618 36-314 (493)
96 KOG0645 WD40 repeat protein [G 99.4 1.2E-10 2.6E-15 108.2 25.3 269 272-593 20-310 (312)
97 KOG1445 Tumor-specific antigen 99.4 1.5E-10 3.2E-15 119.0 27.5 154 458-630 629-787 (1012)
98 KOG0275 Conserved WD40 repeat- 99.4 3.5E-12 7.5E-17 120.6 14.4 275 369-682 213-498 (508)
99 KOG0282 mRNA splicing factor [ 99.4 1.2E-11 2.6E-16 123.5 18.7 274 271-592 219-503 (503)
100 KOG0275 Conserved WD40 repeat- 99.4 3.4E-12 7.4E-17 120.6 14.1 272 320-629 214-501 (508)
101 KOG4497 Uncharacterized conser 99.4 1.8E-11 4E-16 116.3 18.8 332 171-579 17-424 (447)
102 PLN00181 protein SPA1-RELATED; 99.4 1E-10 2.2E-15 136.5 29.6 282 272-593 489-792 (793)
103 KOG0772 Uncharacterized conser 99.4 1.6E-11 3.4E-16 123.4 19.1 268 369-676 167-468 (641)
104 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.8E-09 6E-14 108.5 34.0 251 326-602 52-338 (352)
105 KOG0643 Translation initiation 99.4 3.8E-11 8.3E-16 111.1 18.4 268 273-578 17-308 (327)
106 KOG1274 WD40 repeat protein [G 99.4 7.5E-11 1.6E-15 126.7 23.3 238 369-655 13-263 (933)
107 PF02239 Cytochrom_D1: Cytochr 99.4 7E-10 1.5E-14 115.7 30.4 316 249-602 16-355 (369)
108 KOG0772 Uncharacterized conser 99.4 7.1E-11 1.5E-15 118.7 21.4 294 312-630 160-480 (641)
109 PF08662 eIF2A: Eukaryotic tra 99.4 4.7E-11 1E-15 112.9 19.5 173 460-660 9-185 (194)
110 KOG0283 WD40 repeat-containing 99.4 6.4E-11 1.4E-15 126.5 21.3 195 421-656 372-578 (712)
111 KOG2314 Translation initiation 99.4 7.9E-10 1.7E-14 112.4 27.6 323 171-578 219-558 (698)
112 KOG0292 Vesicle coat complex C 99.3 5.6E-09 1.2E-13 111.8 34.3 436 44-629 33-511 (1202)
113 PTZ00420 coronin; Provisional 99.3 8.6E-10 1.9E-14 119.7 29.1 218 421-675 77-316 (568)
114 PF02239 Cytochrom_D1: Cytochr 99.3 2.7E-10 5.9E-15 118.8 24.5 283 335-662 7-356 (369)
115 KOG1539 WD repeat protein [Gen 99.3 5.5E-09 1.2E-13 111.4 33.8 217 345-594 420-648 (910)
116 KOG0973 Histone transcription 99.3 4.2E-11 9.2E-16 131.2 18.2 222 423-676 18-276 (942)
117 KOG1274 WD40 repeat protein [G 99.3 2.9E-10 6.3E-15 122.3 23.4 260 322-630 16-293 (933)
118 KOG0288 WD40 repeat protein Ti 99.3 2.1E-11 4.6E-16 119.4 13.6 274 315-629 171-453 (459)
119 KOG0640 mRNA cleavage stimulat 99.3 1.7E-10 3.7E-15 108.9 17.9 281 311-629 104-418 (430)
120 KOG0639 Transducin-like enhanc 99.3 1.1E-10 2.4E-15 116.9 17.2 267 317-630 417-697 (705)
121 PF08662 eIF2A: Eukaryotic tra 99.3 2.4E-10 5.2E-15 108.1 18.3 157 423-597 10-182 (194)
122 COG5354 Uncharacterized protei 99.3 2.1E-09 4.7E-14 108.5 25.2 270 324-629 136-421 (561)
123 COG5354 Uncharacterized protei 99.3 2.1E-09 4.6E-14 108.5 25.2 314 318-676 31-370 (561)
124 KOG0643 Translation initiation 99.3 1E-09 2.3E-14 101.8 21.0 276 312-626 3-306 (327)
125 KOG1408 WD40 repeat protein [F 99.3 8.1E-09 1.7E-13 108.0 29.1 213 423-676 464-694 (1080)
126 KOG0639 Transducin-like enhanc 99.3 1.9E-10 4.1E-15 115.2 16.6 263 273-578 426-695 (705)
127 KOG0278 Serine/threonine kinas 99.3 2.7E-10 5.8E-15 104.5 16.2 270 318-630 13-290 (334)
128 KOG0289 mRNA splicing factor [ 99.3 1.1E-09 2.4E-14 108.1 21.6 254 343-629 237-498 (506)
129 PF02897 Peptidase_S9_N: Proly 99.2 9.8E-09 2.1E-13 110.8 31.2 264 324-602 128-412 (414)
130 KOG0276 Vesicle coat complex C 99.2 6.7E-08 1.4E-12 100.0 34.6 373 176-629 67-483 (794)
131 KOG2106 Uncharacterized conser 99.2 5.1E-08 1.1E-12 98.4 32.4 413 171-676 74-502 (626)
132 KOG0295 WD40 repeat-containing 99.2 3.9E-10 8.5E-15 109.0 16.2 261 274-578 116-397 (406)
133 KOG1273 WD40 repeat protein [G 99.2 2.4E-09 5.3E-14 101.6 20.7 267 322-625 26-311 (405)
134 KOG1273 WD40 repeat protein [G 99.2 5E-09 1.1E-13 99.5 21.9 257 372-676 26-304 (405)
135 KOG2315 Predicted translation 99.2 6.3E-08 1.4E-12 99.3 30.3 312 321-676 36-365 (566)
136 KOG0288 WD40 repeat protein Ti 99.2 5.4E-10 1.2E-14 109.7 14.1 261 272-578 181-452 (459)
137 KOG1063 RNA polymerase II elon 99.2 1.4E-08 2.9E-13 106.3 25.0 148 502-676 517-675 (764)
138 KOG1063 RNA polymerase II elon 99.1 1.6E-07 3.4E-12 98.5 31.6 323 324-682 150-635 (764)
139 KOG2315 Predicted translation 99.1 3.1E-08 6.8E-13 101.5 26.0 332 171-544 43-391 (566)
140 PF02897 Peptidase_S9_N: Proly 99.1 5.7E-08 1.2E-12 104.9 29.9 304 331-663 77-413 (414)
141 KOG0292 Vesicle coat complex C 99.1 1.3E-08 2.8E-13 109.1 23.1 267 271-578 14-313 (1202)
142 KOG0285 Pleiotropic regulator 99.1 9.1E-09 2E-13 99.3 19.9 271 316-630 148-432 (460)
143 KOG0277 Peroxisomal targeting 99.1 9.2E-09 2E-13 95.0 18.9 281 319-629 8-301 (311)
144 KOG0316 Conserved WD40 repeat- 99.1 2.7E-08 5.8E-13 90.9 21.1 269 313-627 11-290 (307)
145 KOG0641 WD40 repeat protein [G 99.1 9.1E-08 2E-12 86.6 24.4 272 321-630 34-342 (350)
146 KOG0310 Conserved WD40 repeat- 99.1 9.5E-09 2E-13 103.4 19.6 265 321-629 28-301 (487)
147 KOG0277 Peroxisomal targeting 99.1 6.3E-09 1.4E-13 96.0 16.5 229 421-687 11-260 (311)
148 KOG0283 WD40 repeat-containing 99.1 5.7E-09 1.2E-13 111.9 18.8 208 360-596 360-578 (712)
149 KOG0278 Serine/threonine kinas 99.1 3.9E-09 8.4E-14 97.0 14.4 217 345-599 79-302 (334)
150 KOG2139 WD40 repeat protein [G 99.0 4.7E-08 1E-12 94.8 21.6 253 321-602 100-391 (445)
151 KOG0289 mRNA splicing factor [ 99.0 1.8E-08 3.8E-13 99.8 19.1 210 424-674 267-485 (506)
152 KOG0640 mRNA cleavage stimulat 99.0 1E-08 2.2E-13 97.1 16.3 267 368-682 111-413 (430)
153 KOG0268 Sof1-like rRNA process 99.0 3.6E-09 7.8E-14 102.3 13.3 249 343-630 85-338 (433)
154 PF08450 SGL: SMP-30/Gluconola 99.0 9.7E-08 2.1E-12 95.0 24.4 227 374-627 4-245 (246)
155 KOG2919 Guanine nucleotide-bin 99.0 2.2E-08 4.8E-13 95.6 17.6 261 373-677 53-352 (406)
156 KOG0316 Conserved WD40 repeat- 99.0 9.6E-08 2.1E-12 87.3 20.6 259 273-578 24-291 (307)
157 KOG0294 WD40 repeat-containing 99.0 3.8E-08 8.2E-13 93.8 18.6 232 319-596 43-283 (362)
158 PRK10115 protease 2; Provision 99.0 9.1E-07 2E-11 100.3 32.0 256 322-603 129-403 (686)
159 KOG0650 WD40 repeat nucleolar 99.0 5E-08 1.1E-12 100.5 19.1 260 318-627 399-680 (733)
160 PF06433 Me-amine-dh_H: Methyl 99.0 1.3E-06 2.8E-11 86.8 28.2 294 333-663 3-329 (342)
161 KOG0299 U3 snoRNP-associated p 98.9 6.6E-08 1.4E-12 96.7 19.0 277 313-629 136-447 (479)
162 KOG4378 Nuclear protein COP1 [ 98.9 6.5E-08 1.4E-12 97.4 19.0 198 438-675 100-303 (673)
163 KOG1009 Chromatin assembly com 98.9 6.4E-08 1.4E-12 95.3 18.6 278 323-629 17-364 (434)
164 KOG1538 Uncharacterized conser 98.9 1.6E-08 3.5E-13 105.0 15.1 263 321-630 14-286 (1081)
165 KOG2139 WD40 repeat protein [G 98.9 3.4E-08 7.4E-13 95.7 16.3 188 420-629 100-302 (445)
166 PRK13616 lipoprotein LpqB; Pro 98.9 6.7E-08 1.5E-12 106.3 20.9 191 433-662 323-535 (591)
167 KOG0281 Beta-TrCP (transducin 98.9 1.2E-08 2.7E-13 97.9 12.7 252 288-598 215-481 (499)
168 KOG2919 Guanine nucleotide-bin 98.9 1.2E-07 2.6E-12 90.7 19.1 181 423-626 163-359 (406)
169 KOG0310 Conserved WD40 repeat- 98.9 4.5E-08 9.7E-13 98.6 17.2 258 370-675 27-289 (487)
170 PRK10115 protease 2; Provision 98.9 3.3E-06 7.1E-11 95.8 32.8 255 372-663 129-403 (686)
171 PF07433 DUF1513: Protein of u 98.9 9.5E-07 2E-11 86.8 23.9 220 421-663 7-256 (305)
172 KOG0646 WD40 repeat protein [G 98.9 3.9E-07 8.4E-12 91.5 21.3 217 419-673 82-327 (476)
173 KOG0313 Microtubule binding pr 98.9 1.2E-06 2.6E-11 85.7 23.6 271 318-630 104-411 (423)
174 KOG1408 WD40 repeat protein [F 98.8 4.2E-07 9.1E-12 95.5 21.6 238 317-594 457-713 (1080)
175 KOG0771 Prolactin regulatory e 98.8 8.3E-08 1.8E-12 95.2 15.5 186 423-630 149-347 (398)
176 KOG0641 WD40 repeat protein [G 98.8 1.9E-06 4.1E-11 78.2 22.7 216 423-679 94-333 (350)
177 KOG4283 Transcription-coupled 98.8 1.9E-06 4E-11 81.6 21.9 273 317-624 41-352 (397)
178 PF08450 SGL: SMP-30/Gluconola 98.8 8.8E-07 1.9E-11 88.1 21.4 209 423-674 4-233 (246)
179 KOG0285 Pleiotropic regulator 98.8 1.8E-07 3.9E-12 90.5 15.3 239 366-657 148-392 (460)
180 KOG1332 Vesicle coat complex C 98.8 4.7E-07 1E-11 83.5 16.5 223 381-630 23-279 (299)
181 PLN02919 haloacid dehalogenase 98.8 5.3E-06 1.1E-10 98.3 29.8 199 422-658 627-892 (1057)
182 KOG0307 Vesicle coat complex C 98.7 5.1E-08 1.1E-12 108.0 11.7 247 320-597 65-330 (1049)
183 PRK13616 lipoprotein LpqB; Pro 98.7 2.4E-06 5.1E-11 94.3 24.7 165 370-546 350-530 (591)
184 PF07433 DUF1513: Protein of u 98.7 6.7E-06 1.4E-10 80.9 24.9 227 220-468 9-269 (305)
185 KOG0647 mRNA export protein (c 98.7 9E-06 1.9E-10 77.5 24.6 271 319-628 27-314 (347)
186 KOG4378 Nuclear protein COP1 [ 98.7 1E-06 2.3E-11 88.9 19.4 174 423-619 126-305 (673)
187 KOG0771 Prolactin regulatory e 98.7 3.1E-07 6.8E-12 91.2 15.4 201 373-595 148-357 (398)
188 KOG1524 WD40 repeat-containing 98.7 3.9E-07 8.4E-12 92.8 16.0 167 422-628 108-277 (737)
189 KOG2394 WD40 protein DMR-N9 [G 98.7 6.8E-07 1.5E-11 91.2 17.6 158 421-617 222-384 (636)
190 KOG0650 WD40 repeat nucleolar 98.7 1.1E-06 2.4E-11 90.8 19.3 188 368-579 520-727 (733)
191 KOG0313 Microtubule binding pr 98.7 8.8E-07 1.9E-11 86.7 17.6 217 430-687 115-371 (423)
192 KOG0647 mRNA export protein (c 98.7 3.9E-06 8.5E-11 79.9 21.1 267 271-578 32-314 (347)
193 KOG1332 Vesicle coat complex C 98.7 1.1E-06 2.5E-11 80.9 16.8 238 321-593 13-285 (299)
194 KOG1445 Tumor-specific antigen 98.7 2.4E-07 5.1E-12 96.0 13.4 187 422-629 631-835 (1012)
195 KOG0274 Cdc4 and related F-box 98.7 5.2E-06 1.1E-10 90.3 24.6 258 344-659 225-487 (537)
196 PF06433 Me-amine-dh_H: Methyl 98.7 3.3E-05 7.2E-10 77.0 27.6 253 323-603 39-329 (342)
197 KOG0308 Conserved WD40 repeat- 98.7 5.4E-07 1.2E-11 94.0 15.7 237 331-603 36-295 (735)
198 KOG0281 Beta-TrCP (transducin 98.7 1.7E-07 3.7E-12 90.3 10.8 251 343-657 213-480 (499)
199 KOG0276 Vesicle coat complex C 98.7 2.1E-06 4.6E-11 89.2 19.4 231 369-630 13-250 (794)
200 KOG0646 WD40 repeat protein [G 98.7 1.9E-06 4.1E-11 86.7 18.4 220 321-567 83-329 (476)
201 COG3386 Gluconolactonase [Carb 98.6 1E-05 2.2E-10 81.7 23.7 214 421-674 27-263 (307)
202 KOG2110 Uncharacterized conser 98.6 3.4E-05 7.3E-10 75.8 25.8 149 425-592 92-248 (391)
203 KOG0269 WD40 repeat-containing 98.6 5.6E-07 1.2E-11 95.7 14.4 215 424-674 93-318 (839)
204 PLN02919 haloacid dehalogenase 98.6 2.5E-05 5.5E-10 92.7 29.6 238 323-598 571-892 (1057)
205 KOG4328 WD40 protein [Function 98.6 1E-05 2.2E-10 81.3 21.5 287 321-655 188-496 (498)
206 KOG2394 WD40 protein DMR-N9 [G 98.6 1.7E-06 3.7E-11 88.4 16.2 196 427-677 182-386 (636)
207 KOG0294 WD40 repeat-containing 98.6 8.9E-06 1.9E-10 78.0 20.0 225 365-629 39-273 (362)
208 KOG4328 WD40 protein [Function 98.6 1.3E-05 2.8E-10 80.6 21.9 286 271-595 191-496 (498)
209 KOG1036 Mitotic spindle checkp 98.6 2E-05 4.3E-10 75.5 21.9 292 320-656 14-318 (323)
210 KOG1036 Mitotic spindle checkp 98.6 2.8E-05 6E-10 74.5 22.9 290 218-595 16-317 (323)
211 COG3386 Gluconolactonase [Carb 98.6 9.4E-05 2E-09 74.7 27.7 233 373-630 28-278 (307)
212 KOG0303 Actin-binding protein 98.5 3.6E-06 7.9E-11 82.9 16.4 239 331-597 43-297 (472)
213 PRK02888 nitrous-oxide reducta 98.5 8.3E-05 1.8E-09 80.1 27.8 250 326-602 199-482 (635)
214 PF04762 IKI3: IKI3 family; I 98.5 0.00047 1E-08 80.6 36.4 346 175-594 86-458 (928)
215 KOG1963 WD40 repeat protein [G 98.5 0.00013 2.8E-09 79.6 29.2 154 422-596 164-324 (792)
216 KOG0264 Nucleosome remodeling 98.5 2.5E-05 5.4E-10 78.6 22.1 193 420-630 179-396 (422)
217 KOG0299 U3 snoRNP-associated p 98.5 6.3E-06 1.4E-10 82.9 17.8 290 368-708 141-463 (479)
218 KOG0303 Actin-binding protein 98.5 5.5E-06 1.2E-10 81.6 16.7 151 456-626 81-234 (472)
219 KOG0268 Sof1-like rRNA process 98.5 7.7E-07 1.7E-11 86.5 10.1 210 422-676 113-326 (433)
220 PRK02888 nitrous-oxide reducta 98.5 0.00011 2.4E-09 79.2 27.2 141 510-664 320-484 (635)
221 KOG0307 Vesicle coat complex C 98.5 9.7E-07 2.1E-11 98.2 12.1 234 370-629 65-319 (1049)
222 KOG0264 Nucleosome remodeling 98.5 2.5E-05 5.4E-10 78.6 20.7 248 317-595 122-405 (422)
223 KOG1524 WD40 repeat-containing 98.5 9.4E-06 2E-10 83.0 17.8 173 366-579 101-278 (737)
224 KOG4283 Transcription-coupled 98.5 3E-05 6.5E-10 73.6 19.7 218 422-677 105-347 (397)
225 KOG0308 Conserved WD40 repeat- 98.5 5.2E-06 1.1E-10 86.9 15.9 196 423-655 78-286 (735)
226 KOG0300 WD40 repeat-containing 98.4 1.2E-05 2.6E-10 76.9 16.7 267 345-674 168-453 (481)
227 COG3391 Uncharacterized conser 98.4 0.001 2.2E-08 70.4 33.6 244 371-661 32-290 (381)
228 KOG1963 WD40 repeat protein [G 98.4 0.00046 1E-08 75.4 30.5 326 222-596 167-540 (792)
229 KOG1034 Transcriptional repres 98.4 3.1E-05 6.7E-10 74.8 19.0 211 401-630 116-376 (385)
230 KOG1538 Uncharacterized conser 98.4 1.2E-05 2.6E-10 84.2 17.5 190 421-630 15-245 (1081)
231 KOG2110 Uncharacterized conser 98.4 2.9E-05 6.3E-10 76.2 18.9 167 440-630 69-241 (391)
232 COG1770 PtrB Protease II [Amin 98.4 0.0012 2.7E-08 70.8 31.8 260 322-603 131-405 (682)
233 PF10647 Gmad1: Lipoprotein Lp 98.3 0.00013 2.8E-09 72.3 22.4 187 421-624 26-225 (253)
234 KOG2111 Uncharacterized conser 98.3 0.00027 6E-09 68.2 22.8 170 439-630 75-249 (346)
235 KOG1009 Chromatin assembly com 98.3 6.9E-06 1.5E-10 81.4 12.2 153 459-629 16-187 (434)
236 KOG1523 Actin-related protein 98.3 5.2E-05 1.1E-09 73.1 17.7 242 322-595 13-281 (361)
237 KOG1523 Actin-related protein 98.3 2.5E-05 5.4E-10 75.2 15.5 205 422-657 14-239 (361)
238 KOG0321 WD40 repeat-containing 98.3 5.2E-05 1.1E-09 79.5 18.8 268 331-629 62-383 (720)
239 KOG0269 WD40 repeat-containing 98.3 4.8E-05 1E-09 81.5 18.1 176 423-617 138-319 (839)
240 KOG1007 WD repeat protein TSSC 98.3 0.00015 3.2E-09 68.9 19.3 201 318-540 62-286 (370)
241 KOG0267 Microtubule severing p 98.3 1.8E-06 3.8E-11 91.3 7.2 183 419-626 71-257 (825)
242 KOG0302 Ribosome Assembly prot 98.3 5E-05 1.1E-09 74.6 16.6 163 457-655 212-379 (440)
243 KOG0300 WD40 repeat-containing 98.2 5.6E-05 1.2E-09 72.4 16.0 172 423-618 277-455 (481)
244 KOG2321 WD40 repeat protein [G 98.2 0.00019 4.1E-09 74.4 20.8 268 318-629 50-334 (703)
245 KOG0301 Phospholipase A2-activ 98.2 0.00027 5.9E-09 75.0 22.1 265 314-629 9-280 (745)
246 KOG1007 WD repeat protein TSSC 98.2 0.00068 1.5E-08 64.6 22.2 215 346-578 39-279 (370)
247 COG1506 DAP2 Dipeptidyl aminop 98.2 0.0016 3.6E-08 73.6 29.7 286 322-653 15-343 (620)
248 COG3490 Uncharacterized protei 98.2 0.00042 9.2E-09 66.1 19.9 219 421-663 70-319 (366)
249 KOG2321 WD40 repeat protein [G 98.1 0.0002 4.4E-09 74.3 18.9 258 369-676 51-324 (703)
250 KOG0302 Ribosome Assembly prot 98.1 0.0001 2.2E-09 72.5 15.4 156 419-595 212-379 (440)
251 COG1770 PtrB Protease II [Amin 98.1 0.016 3.4E-07 62.7 32.8 260 372-663 131-405 (682)
252 PF04762 IKI3: IKI3 family; I 98.1 0.0014 3E-08 76.7 27.6 188 424-627 81-324 (928)
253 COG3490 Uncharacterized protei 98.1 0.0019 4.1E-08 61.8 23.2 209 222-455 74-318 (366)
254 KOG1034 Transcriptional repres 98.1 0.00021 4.6E-09 69.2 16.8 237 311-593 127-382 (385)
255 COG2319 FOG: WD40 repeat [Gene 98.1 0.0051 1.1E-07 65.8 30.2 267 321-625 67-346 (466)
256 KOG0290 Conserved WD40 repeat- 98.1 0.00097 2.1E-08 63.6 20.4 263 176-475 59-355 (364)
257 PF10647 Gmad1: Lipoprotein Lp 98.1 0.0021 4.6E-08 63.7 24.3 191 371-576 25-227 (253)
258 KOG0321 WD40 repeat-containing 98.0 0.00025 5.3E-09 74.6 17.5 220 422-676 104-371 (720)
259 KOG0274 Cdc4 and related F-box 98.0 0.001 2.2E-08 72.7 22.9 253 289-600 227-488 (537)
260 COG3391 Uncharacterized conser 98.0 0.0073 1.6E-07 64.0 28.9 246 321-602 32-291 (381)
261 KOG0290 Conserved WD40 repeat- 98.0 0.0023 5E-08 61.1 21.5 234 316-578 93-357 (364)
262 COG2319 FOG: WD40 repeat [Gene 98.0 0.0036 7.9E-08 66.9 26.9 178 427-628 119-305 (466)
263 KOG0301 Phospholipase A2-activ 97.9 0.0012 2.6E-08 70.3 20.1 209 343-594 77-288 (745)
264 KOG0267 Microtubule severing p 97.9 1.8E-05 3.9E-10 84.0 6.7 149 456-629 70-218 (825)
265 KOG2111 Uncharacterized conser 97.9 0.0038 8.3E-08 60.6 21.6 154 420-595 96-257 (346)
266 TIGR02171 Fb_sc_TIGR02171 Fibr 97.9 0.0011 2.5E-08 74.0 20.8 242 178-455 320-595 (912)
267 KOG0270 WD40 repeat-containing 97.9 0.0088 1.9E-07 60.6 24.8 288 324-656 130-451 (463)
268 TIGR03300 assembly_YfgL outer 97.9 0.038 8.3E-07 58.8 32.1 293 171-540 60-376 (377)
269 KOG0649 WD40 repeat protein [G 97.9 0.00069 1.5E-08 62.9 15.4 219 424-676 16-257 (325)
270 KOG3881 Uncharacterized conser 97.9 0.0014 3.1E-08 65.1 18.4 194 429-656 115-322 (412)
271 TIGR03300 assembly_YfgL outer 97.9 0.041 8.9E-07 58.5 31.5 94 520-629 277-371 (377)
272 KOG1272 WD40-repeat-containing 97.8 8.3E-05 1.8E-09 75.1 8.9 211 420-676 131-345 (545)
273 KOG2445 Nuclear pore complex c 97.7 0.011 2.4E-07 57.2 21.5 239 321-579 15-310 (361)
274 KOG1587 Cytoplasmic dynein int 97.7 0.0044 9.5E-08 67.4 20.3 264 291-595 223-517 (555)
275 KOG0649 WD40 repeat protein [G 97.7 0.017 3.8E-07 53.9 20.8 145 422-595 118-275 (325)
276 PRK11138 outer membrane biogen 97.7 0.13 2.7E-06 55.1 31.8 94 520-629 292-386 (394)
277 COG1506 DAP2 Dipeptidyl aminop 97.6 0.017 3.7E-07 65.4 25.4 215 372-598 15-257 (620)
278 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.0063 1.4E-07 68.4 20.4 142 29-231 318-467 (912)
279 KOG0270 WD40 repeat-containing 97.6 0.016 3.5E-07 58.8 21.2 235 331-597 191-452 (463)
280 PF15492 Nbas_N: Neuroblastoma 97.6 0.042 9.2E-07 53.0 23.1 164 422-599 47-264 (282)
281 PF11768 DUF3312: Protein of u 97.5 0.013 2.8E-07 62.2 20.6 140 438-597 183-332 (545)
282 KOG2445 Nuclear pore complex c 97.5 0.033 7.2E-07 54.0 21.0 239 369-631 13-312 (361)
283 PF13360 PQQ_2: PQQ-like domai 97.5 0.034 7.4E-07 54.7 22.5 110 517-659 117-235 (238)
284 PF07676 PD40: WD40-like Beta 97.5 0.00012 2.6E-09 48.8 3.1 36 61-123 2-39 (39)
285 PF07676 PD40: WD40-like Beta 97.4 0.00026 5.6E-09 47.2 4.7 36 504-539 2-39 (39)
286 KOG1272 WD40-repeat-containing 97.4 0.00094 2E-08 67.7 10.0 214 372-620 132-347 (545)
287 KOG4532 WD40-like repeat conta 97.4 0.059 1.3E-06 51.3 20.9 156 421-597 161-334 (344)
288 KOG3914 WD repeat protein WDR4 97.4 0.0046 9.9E-08 62.0 14.5 161 461-658 67-227 (390)
289 KOG4547 WD40 repeat-containing 97.3 0.024 5.2E-07 59.7 19.7 106 503-624 93-206 (541)
290 KOG3881 Uncharacterized conser 97.3 0.017 3.8E-07 57.7 16.9 133 439-596 173-322 (412)
291 KOG4547 WD40 repeat-containing 97.3 0.057 1.2E-06 57.0 21.3 134 437-593 78-221 (541)
292 KOG0322 G-protein beta subunit 97.2 0.0036 7.7E-08 59.1 10.5 144 429-593 162-322 (323)
293 KOG0974 WD-repeat protein WDR6 97.1 0.017 3.8E-07 64.7 17.1 178 426-630 95-281 (967)
294 KOG4227 WD40 repeat protein [G 97.0 0.1 2.2E-06 52.1 19.5 184 271-475 61-263 (609)
295 KOG1354 Serine/threonine prote 97.0 0.33 7.2E-06 48.0 22.6 157 424-599 170-364 (433)
296 KOG0644 Uncharacterized conser 97.0 0.0011 2.4E-08 72.0 6.4 268 313-628 184-459 (1113)
297 KOG2041 WD40 repeat protein [G 97.0 0.017 3.7E-07 61.9 14.9 268 323-620 18-321 (1189)
298 KOG1587 Cytoplasmic dynein int 97.0 0.097 2.1E-06 57.2 21.0 261 348-655 223-517 (555)
299 PRK11138 outer membrane biogen 97.0 0.7 1.5E-05 49.4 32.2 95 429-542 293-393 (394)
300 KOG1188 WD40 repeat protein [G 96.9 0.049 1.1E-06 53.6 16.0 180 432-630 42-235 (376)
301 PF06977 SdiA-regulated: SdiA- 96.9 0.28 6.2E-06 48.0 21.5 191 421-627 24-240 (248)
302 KOG0642 Cell-cycle nuclear pro 96.9 0.0094 2E-07 62.3 11.7 241 322-598 297-565 (577)
303 KOG1334 WD40 repeat protein [G 96.9 0.018 3.8E-07 59.3 13.3 284 315-629 138-458 (559)
304 KOG1920 IkappaB kinase complex 96.9 0.68 1.5E-05 53.6 26.8 230 175-449 79-324 (1265)
305 KOG2041 WD40 repeat protein [G 96.9 0.016 3.6E-07 62.1 13.3 183 423-630 76-281 (1189)
306 KOG1920 IkappaB kinase complex 96.8 0.12 2.6E-06 59.4 20.4 192 424-630 74-312 (1265)
307 KOG0322 G-protein beta subunit 96.8 0.0066 1.4E-07 57.4 8.8 63 560-630 254-316 (323)
308 PF04053 Coatomer_WDAD: Coatom 96.8 0.063 1.4E-06 57.5 17.3 208 371-628 34-253 (443)
309 PF04053 Coatomer_WDAD: Coatom 96.8 0.11 2.3E-06 55.7 18.9 212 320-578 33-253 (443)
310 COG3204 Uncharacterized protei 96.7 0.21 4.5E-06 48.8 18.5 166 457-658 86-267 (316)
311 KOG1188 WD40 repeat protein [G 96.7 0.16 3.6E-06 50.1 17.8 179 347-547 50-246 (376)
312 KOG4532 WD40-like repeat conta 96.7 0.1 2.2E-06 49.8 15.6 145 483-659 136-287 (344)
313 PF06977 SdiA-regulated: SdiA- 96.7 0.14 2.9E-06 50.2 17.3 165 457-657 22-204 (248)
314 KOG4227 WD40 repeat protein [G 96.7 0.074 1.6E-06 53.1 15.2 194 367-579 54-266 (609)
315 PRK13614 lipoprotein LpqB; Pro 96.6 0.15 3.2E-06 56.1 19.1 163 421-599 345-523 (573)
316 PRK13613 lipoprotein LpqB; Pro 96.6 0.27 5.9E-06 54.7 21.3 189 421-625 365-569 (599)
317 PF15492 Nbas_N: Neuroblastoma 96.6 0.81 1.8E-05 44.5 23.7 63 424-493 3-73 (282)
318 KOG1310 WD40 repeat protein [G 96.6 0.088 1.9E-06 55.1 15.5 238 311-598 42-307 (758)
319 KOG1912 WD40 repeat protein [G 96.5 0.54 1.2E-05 51.7 21.3 94 534-629 446-543 (1062)
320 KOG1912 WD40 repeat protein [G 96.5 1.9 4.1E-05 47.7 25.1 71 587-666 448-518 (1062)
321 KOG0644 Uncharacterized conser 96.5 0.019 4.1E-07 62.8 10.4 250 289-597 211-471 (1113)
322 KOG3914 WD repeat protein WDR4 96.4 0.074 1.6E-06 53.6 13.6 153 423-598 67-227 (390)
323 PRK13615 lipoprotein LpqB; Pro 96.4 0.33 7.2E-06 53.3 19.9 159 422-598 337-506 (557)
324 KOG0974 WD-repeat protein WDR6 96.3 0.06 1.3E-06 60.6 13.4 100 517-630 140-239 (967)
325 KOG2100 Dipeptidyl aminopeptid 96.2 2.6 5.5E-05 48.9 26.8 111 516-630 345-460 (755)
326 PF13360 PQQ_2: PQQ-like domai 96.2 0.96 2.1E-05 44.3 20.9 137 438-600 2-146 (238)
327 TIGR02604 Piru_Ver_Nterm putat 96.2 0.28 6.1E-06 51.8 17.9 111 504-623 65-199 (367)
328 KOG4499 Ca2+-binding protein R 96.2 1.2 2.6E-05 42.0 20.9 143 423-577 113-274 (310)
329 COG1505 Serine proteases of th 96.1 2 4.3E-05 46.5 23.0 57 324-386 114-170 (648)
330 KOG1354 Serine/threonine prote 96.1 1.8 3.8E-05 43.2 22.6 67 421-494 275-360 (433)
331 KOG4499 Ca2+-binding protein R 95.9 1.5 3.3E-05 41.4 19.1 157 458-629 110-276 (310)
332 PRK13613 lipoprotein LpqB; Pro 95.8 2.9 6.3E-05 46.7 23.9 162 371-546 364-542 (599)
333 PF04841 Vps16_N: Vps16, N-ter 95.6 2 4.3E-05 46.0 21.4 45 440-492 62-108 (410)
334 KOG2100 Dipeptidyl aminopeptid 95.5 3.2 7E-05 48.0 23.7 89 563-666 345-434 (755)
335 KOG3621 WD40 repeat-containing 95.5 0.59 1.3E-05 50.9 16.1 100 175-297 44-153 (726)
336 KOG1310 WD40 repeat protein [G 95.5 0.052 1.1E-06 56.7 8.0 117 502-630 42-170 (758)
337 PRK13614 lipoprotein LpqB; Pro 95.4 2.6 5.7E-05 46.6 21.6 159 371-546 344-521 (573)
338 COG3204 Uncharacterized protei 95.4 3.1 6.7E-05 41.0 20.7 192 420-628 87-303 (316)
339 COG4257 Vgb Streptogramin lyas 95.4 2.9 6.3E-05 40.6 22.1 148 171-363 70-226 (353)
340 KOG1517 Guanine nucleotide bin 95.4 3.3 7.2E-05 47.6 21.8 186 424-629 1171-1373(1387)
341 PF11768 DUF3312: Protein of u 95.4 0.77 1.7E-05 49.2 16.4 69 421-496 262-332 (545)
342 KOG1240 Protein kinase contain 95.4 4.1 9E-05 47.6 22.8 103 432-547 1165-1277(1431)
343 TIGR02604 Piru_Ver_Nterm putat 95.3 1.3 2.8E-05 46.7 18.5 155 511-676 14-194 (367)
344 PF13449 Phytase-like: Esteras 95.3 2.6 5.7E-05 43.6 20.2 130 515-656 89-253 (326)
345 PF03088 Str_synth: Strictosid 95.2 0.11 2.5E-06 41.5 7.5 71 516-595 3-88 (89)
346 PF05096 Glu_cyclase_2: Glutam 95.1 1.1 2.5E-05 43.7 15.6 181 424-629 50-252 (264)
347 KOG1520 Predicted alkaloid syn 94.9 0.56 1.2E-05 47.8 13.3 83 534-625 198-282 (376)
348 PRK13615 lipoprotein LpqB; Pro 94.9 6.2 0.00013 43.6 22.3 156 372-546 336-505 (557)
349 KOG1240 Protein kinase contain 94.8 2.7 5.9E-05 49.0 19.5 201 427-659 1058-1278(1431)
350 COG4257 Vgb Streptogramin lyas 94.6 4.8 0.0001 39.2 23.5 151 422-598 107-266 (353)
351 PF13449 Phytase-like: Esteras 94.4 7.3 0.00016 40.3 24.5 125 420-544 86-252 (326)
352 KOG3621 WD40 repeat-containing 94.3 0.32 7E-06 52.8 10.5 107 425-544 40-155 (726)
353 KOG0642 Cell-cycle nuclear pro 94.3 1.4 3E-05 46.7 14.7 189 424-630 300-554 (577)
354 PF00400 WD40: WD domain, G-be 94.1 0.15 3.3E-06 33.4 5.1 36 550-592 4-39 (39)
355 KOG1214 Nidogen and related ba 94.0 4.7 0.0001 45.0 18.4 196 424-659 1030-1231(1289)
356 PF03088 Str_synth: Strictosid 93.8 0.55 1.2E-05 37.6 8.5 66 562-629 2-78 (89)
357 KOG0280 Uncharacterized conser 93.5 5.1 0.00011 39.2 15.7 165 483-675 93-263 (339)
358 KOG1645 RING-finger-containing 93.4 5.9 0.00013 40.6 16.7 211 315-547 189-423 (463)
359 PF02333 Phytase: Phytase; In 93.4 11 0.00025 39.2 22.7 149 431-594 69-237 (381)
360 KOG1520 Predicted alkaloid syn 93.3 2.8 6.1E-05 42.9 14.6 110 511-629 115-240 (376)
361 PF00400 WD40: WD domain, G-be 93.3 0.2 4.3E-06 32.9 4.6 37 502-541 3-39 (39)
362 KOG4649 PQQ (pyrrolo-quinoline 93.2 8.5 0.00019 37.1 19.6 101 331-449 62-167 (354)
363 TIGR03606 non_repeat_PQQ dehyd 93.0 5.1 0.00011 43.0 16.8 121 505-629 24-166 (454)
364 KOG1832 HIV-1 Vpr-binding prot 93.0 0.12 2.6E-06 57.3 4.7 209 321-575 1103-1319(1516)
365 KOG2114 Vacuolar assembly/sort 92.9 11 0.00024 42.5 19.2 190 425-626 30-233 (933)
366 PF15390 DUF4613: Domain of un 92.8 2.6 5.6E-05 45.4 13.9 110 421-543 59-186 (671)
367 cd00216 PQQ_DH Dehydrogenases 92.6 19 0.00042 39.6 33.1 83 534-629 365-458 (488)
368 PF05694 SBP56: 56kDa selenium 92.4 16 0.00035 38.4 24.5 189 427-628 138-394 (461)
369 PF07995 GSDH: Glucose / Sorbo 92.2 2 4.4E-05 44.5 12.5 135 513-656 4-158 (331)
370 PF08553 VID27: VID27 cytoplas 92.2 2.7 5.9E-05 48.1 14.2 127 485-628 502-639 (794)
371 PF07995 GSDH: Glucose / Sorbo 92.1 6.7 0.00015 40.7 16.2 166 422-592 5-212 (331)
372 TIGR03606 non_repeat_PQQ dehyd 91.9 17 0.00037 39.1 19.0 107 421-528 32-162 (454)
373 PF00780 CNH: CNH domain; Int 91.8 15 0.00033 36.7 19.0 151 429-603 6-174 (275)
374 PF05694 SBP56: 56kDa selenium 91.7 2.1 4.6E-05 44.7 11.5 129 439-577 222-393 (461)
375 PF04841 Vps16_N: Vps16, N-ter 91.6 22 0.00047 38.2 24.3 32 558-596 217-248 (410)
376 KOG1517 Guanine nucleotide bin 91.4 19 0.0004 41.9 19.0 202 422-662 1068-1296(1387)
377 PF08553 VID27: VID27 cytoplas 91.4 3.2 7E-05 47.5 13.6 64 516-593 583-646 (794)
378 KOG2114 Vacuolar assembly/sort 90.7 35 0.00076 38.8 21.1 223 375-629 29-275 (933)
379 KOG3617 WD40 and TPR repeat-co 90.7 8.3 0.00018 43.4 15.1 103 271-392 20-124 (1416)
380 KOG1832 HIV-1 Vpr-binding prot 90.5 0.25 5.4E-06 54.9 3.8 212 366-624 1098-1318(1516)
381 PHA03098 kelch-like protein; P 90.4 16 0.00034 40.9 18.4 114 535-663 406-520 (534)
382 PF05787 DUF839: Bacterial pro 90.1 3.7 8.1E-05 45.2 12.5 39 588-626 482-520 (524)
383 KOG2395 Protein involved in va 90.0 4.7 0.0001 42.8 12.2 139 438-593 355-499 (644)
384 KOG2066 Vacuolar assembly/sort 89.9 9.6 0.00021 42.7 14.9 159 430-622 49-220 (846)
385 KOG1230 Protein containing rep 89.6 12 0.00027 38.5 14.4 207 439-657 98-343 (521)
386 KOG1409 Uncharacterized conser 88.5 30 0.00064 35.0 17.5 96 525-629 167-262 (404)
387 PF15390 DUF4613: Domain of un 88.2 24 0.00052 38.4 16.0 153 421-595 22-187 (671)
388 KOG1230 Protein containing rep 88.0 19 0.0004 37.3 14.3 97 331-436 200-314 (521)
389 cd00216 PQQ_DH Dehydrogenases 87.8 48 0.001 36.5 33.3 107 433-547 303-428 (488)
390 COG3823 Glutamine cyclotransfe 87.7 24 0.00053 33.0 15.7 168 437-629 66-250 (262)
391 PF03022 MRJP: Major royal jel 87.6 34 0.00073 34.6 20.5 108 459-578 130-255 (287)
392 KOG1214 Nidogen and related ba 87.5 29 0.00064 39.1 16.5 181 427-629 987-1177(1289)
393 COG5170 CDC55 Serine/threonine 87.5 7.6 0.00016 38.3 10.9 146 422-578 176-358 (460)
394 PF03022 MRJP: Major royal jel 86.8 30 0.00065 35.0 15.7 155 432-628 78-255 (287)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.8 57 0.0012 36.3 36.0 54 535-600 441-496 (527)
396 KOG0309 Conserved WD40 repeat- 86.6 3.7 8E-05 45.2 9.1 158 422-600 28-194 (1081)
397 KOG2377 Uncharacterized conser 86.6 16 0.00034 38.3 13.1 105 511-627 67-173 (657)
398 KOG1334 WD40 repeat protein [G 85.7 8.7 0.00019 40.4 10.9 190 421-629 145-358 (559)
399 KOG2066 Vacuolar assembly/sort 85.4 15 0.00032 41.2 13.1 94 519-629 80-180 (846)
400 KOG2281 Dipeptidyl aminopeptid 85.3 59 0.0013 36.0 17.0 37 321-363 201-237 (867)
401 PF07250 Glyoxal_oxid_N: Glyox 85.2 32 0.0007 33.6 14.2 138 502-665 57-209 (243)
402 PF09826 Beta_propel: Beta pro 84.9 68 0.0015 35.5 26.0 103 534-656 247-357 (521)
403 KOG0280 Uncharacterized conser 84.8 26 0.00056 34.6 12.9 139 459-619 124-265 (339)
404 KOG4640 Anaphase-promoting com 84.6 5.7 0.00012 43.1 9.3 75 457-547 21-96 (665)
405 KOG3617 WD40 and TPR repeat-co 82.9 4.1 8.9E-05 45.6 7.6 104 512-629 17-123 (1416)
406 KOG4640 Anaphase-promoting com 82.1 6.7 0.00015 42.6 8.7 74 512-598 22-96 (665)
407 KOG2377 Uncharacterized conser 81.7 13 0.00028 39.0 10.1 105 456-577 66-173 (657)
408 KOG0309 Conserved WD40 repeat- 81.6 12 0.00026 41.5 10.4 152 372-546 27-191 (1081)
409 PF15525 DUF4652: Domain of un 81.5 30 0.00065 31.8 11.3 102 519-624 66-177 (200)
410 KOG4649 PQQ (pyrrolo-quinoline 81.1 57 0.0012 31.8 20.8 148 423-596 15-167 (354)
411 PF05096 Glu_cyclase_2: Glutam 80.9 60 0.0013 32.0 16.7 145 483-663 64-212 (264)
412 COG5167 VID27 Protein involved 80.6 18 0.0004 38.4 10.9 153 425-594 473-632 (776)
413 TIGR02276 beta_rpt_yvtn 40-res 79.8 11 0.00023 24.9 6.4 31 567-603 1-31 (42)
414 KOG4659 Uncharacterized conser 79.5 1.5E+02 0.0033 35.8 24.0 52 423-475 479-551 (1899)
415 TIGR02276 beta_rpt_yvtn 40-res 78.8 7.8 0.00017 25.6 5.5 27 617-659 1-27 (42)
416 PF09910 DUF2139: Uncharacteri 77.9 71 0.0015 31.9 13.3 64 534-603 77-148 (339)
417 PF15525 DUF4652: Domain of un 77.9 39 0.00084 31.1 10.8 89 566-664 66-158 (200)
418 KOG2237 Predicted serine prote 77.6 1.2E+02 0.0027 33.7 25.8 74 327-410 145-219 (712)
419 PHA03098 kelch-like protein; P 77.3 1E+02 0.0022 34.4 17.1 132 519-663 340-473 (534)
420 PLN02193 nitrile-specifier pro 77.1 1.2E+02 0.0026 33.2 21.9 121 535-664 294-420 (470)
421 KOG1645 RING-finger-containing 76.5 1E+02 0.0022 32.1 16.8 144 421-578 196-351 (463)
422 PF05787 DUF839: Bacterial pro 75.9 62 0.0013 35.8 14.2 35 441-475 482-520 (524)
423 KOG0379 Kelch repeat-containin 75.6 1.1E+02 0.0024 33.6 16.2 117 535-663 139-258 (482)
424 KOG2395 Protein involved in va 75.6 29 0.00064 37.2 10.8 130 485-627 354-491 (644)
425 PF12566 DUF3748: Protein of u 75.3 27 0.00059 29.0 8.3 67 563-629 6-89 (122)
426 TIGR03032 conserved hypothetic 74.3 1E+02 0.0023 31.2 18.2 55 321-387 204-258 (335)
427 KOG2695 WD40 repeat protein [G 74.0 38 0.00082 34.3 10.5 140 400-554 234-385 (425)
428 PLN00033 photosystem II stabil 73.6 78 0.0017 33.7 13.8 135 425-576 245-389 (398)
429 PF00780 CNH: CNH domain; Int 73.5 1E+02 0.0022 30.7 23.4 111 421-547 38-169 (275)
430 PHA02713 hypothetical protein; 73.4 1.6E+02 0.0035 33.0 19.1 110 535-663 432-542 (557)
431 PF05935 Arylsulfotrans: Aryls 72.0 1.6E+02 0.0035 32.3 16.5 125 516-663 153-310 (477)
432 PF14870 PSII_BNR: Photosynthe 70.2 1.3E+02 0.0028 30.6 15.3 135 424-577 150-295 (302)
433 PF12894 Apc4_WD40: Anaphase-p 69.8 13 0.00029 25.6 4.7 30 559-595 13-42 (47)
434 PF07250 Glyoxal_oxid_N: Glyox 69.2 1.1E+02 0.0025 29.8 12.8 146 441-602 48-206 (243)
435 KOG0882 Cyclophilin-related pe 68.3 62 0.0013 34.0 10.9 34 511-547 202-235 (558)
436 KOG2280 Vacuolar assembly/sort 68.2 1.6E+02 0.0034 33.5 14.5 79 375-453 38-118 (829)
437 PF03178 CPSF_A: CPSF A subuni 67.9 1.5E+02 0.0033 30.4 17.0 96 522-629 98-194 (321)
438 COG3211 PhoX Predicted phospha 67.3 69 0.0015 35.0 11.5 70 561-630 503-576 (616)
439 KOG4190 Uncharacterized conser 67.2 43 0.00093 35.8 9.8 149 483-660 755-912 (1034)
440 PF12234 Rav1p_C: RAVE protein 65.9 2.2E+02 0.0047 32.2 15.5 100 516-626 35-147 (631)
441 KOG4714 Nucleoporin [Nuclear s 65.5 15 0.00032 35.6 5.6 74 458-544 181-255 (319)
442 COG5170 CDC55 Serine/threonine 65.4 1.5E+02 0.0033 29.6 14.8 155 458-632 174-362 (460)
443 COG5276 Uncharacterized conser 65.3 1.5E+02 0.0033 29.6 21.4 145 372-546 89-244 (370)
444 PF03178 CPSF_A: CPSF A subuni 65.1 1.7E+02 0.0037 30.0 16.8 104 426-541 94-202 (321)
445 COG5167 VID27 Protein involved 64.9 91 0.002 33.5 11.5 138 464-627 474-623 (776)
446 KOG0882 Cyclophilin-related pe 63.5 79 0.0017 33.3 10.7 103 421-546 204-308 (558)
447 KOG1275 PAB-dependent poly(A) 63.4 1.6E+02 0.0036 34.1 13.8 177 430-630 147-335 (1118)
448 KOG2695 WD40 repeat protein [G 63.3 92 0.002 31.6 10.7 170 437-630 232-406 (425)
449 smart00320 WD40 WD40 repeats. 62.8 17 0.00036 22.0 4.2 30 556-592 11-40 (40)
450 COG4247 Phy 3-phytase (myo-ino 62.5 1.6E+02 0.0034 28.7 20.5 186 427-630 64-279 (364)
451 PF07569 Hira: TUP1-like enhan 62.3 48 0.001 31.9 8.8 77 564-665 17-106 (219)
452 KOG0918 Selenium-binding prote 62.1 67 0.0014 33.3 9.7 38 321-363 313-350 (476)
453 PF09910 DUF2139: Uncharacteri 62.0 1.8E+02 0.0039 29.2 13.1 102 433-547 71-185 (339)
454 PF02333 Phytase: Phytase; In 61.7 2.2E+02 0.0047 30.0 16.2 137 488-654 79-237 (381)
455 PF12894 Apc4_WD40: Anaphase-p 60.9 17 0.00038 25.0 3.9 30 457-493 12-41 (47)
456 smart00135 LY Low-density lipo 60.7 28 0.00061 22.7 5.1 34 608-657 9-42 (43)
457 KOG4714 Nucleoporin [Nuclear s 60.1 13 0.00029 35.8 4.3 73 513-595 182-255 (319)
458 TIGR03032 conserved hypothetic 59.8 2.1E+02 0.0044 29.2 24.1 122 538-676 188-315 (335)
459 COG5276 Uncharacterized conser 59.1 2E+02 0.0043 28.8 25.1 128 323-472 90-229 (370)
460 smart00320 WD40 WD40 repeats. 58.2 20 0.00043 21.6 3.9 31 508-541 10-40 (40)
461 smart00135 LY Low-density lipo 56.7 36 0.00079 22.2 5.1 31 560-596 11-41 (43)
462 PF10168 Nup88: Nuclear pore c 56.1 1.4E+02 0.003 34.6 12.4 91 421-545 87-181 (717)
463 PF14870 PSII_BNR: Photosynthe 54.3 2.5E+02 0.0055 28.5 21.4 160 437-623 122-291 (302)
464 KOG2280 Vacuolar assembly/sort 54.0 3E+02 0.0066 31.4 13.7 48 439-494 64-113 (829)
465 TIGR03548 mutarot_permut cycli 53.9 2.2E+02 0.0048 29.2 12.8 114 535-663 88-203 (323)
466 PF07569 Hira: TUP1-like enhan 53.9 96 0.0021 29.9 9.3 75 517-602 17-103 (219)
467 COG4590 ABC-type uncharacteriz 53.4 2.2E+02 0.0048 30.2 11.9 31 458-496 222-252 (733)
468 TIGR03075 PQQ_enz_alc_DH PQQ-d 52.0 3.8E+02 0.0082 29.9 22.9 80 563-658 239-337 (527)
469 PF12566 DUF3748: Protein of u 51.8 84 0.0018 26.3 7.0 18 460-477 71-88 (122)
470 PLN00033 photosystem II stabil 50.8 3.4E+02 0.0073 28.9 18.8 137 459-623 241-386 (398)
471 KOG4441 Proteins containing BT 50.5 4.2E+02 0.009 29.9 17.6 200 440-663 302-508 (571)
472 KOG0918 Selenium-binding prote 49.2 3.4E+02 0.0073 28.5 14.8 33 423-455 316-350 (476)
473 PF01731 Arylesterase: Arylest 47.7 85 0.0018 25.0 6.4 39 550-594 46-84 (86)
474 PF01731 Arylesterase: Arylest 47.5 98 0.0021 24.7 6.7 23 608-630 54-76 (86)
475 PF12234 Rav1p_C: RAVE protein 47.3 1.9E+02 0.0041 32.8 11.2 99 432-542 42-155 (631)
476 PF10168 Nup88: Nuclear pore c 45.4 2.9E+02 0.0063 32.0 12.8 66 557-630 84-172 (717)
477 KOG1064 RAVE (regulator of V-A 44.9 1.3E+02 0.0029 37.8 10.0 120 458-600 2253-2372(2439)
478 KOG4441 Proteins containing BT 44.0 5.2E+02 0.011 29.2 17.1 112 535-663 444-555 (571)
479 KOG2281 Dipeptidyl aminopeptid 43.9 4.5E+02 0.0097 29.6 12.8 33 423-455 204-237 (867)
480 PF10313 DUF2415: Uncharacteri 43.7 68 0.0015 21.7 4.4 30 609-655 2-34 (43)
481 PF05935 Arylsulfotrans: Aryls 43.0 4.9E+02 0.011 28.6 21.5 142 439-602 128-309 (477)
482 PF14269 Arylsulfotran_2: Aryl 42.7 3.8E+02 0.0083 27.2 12.9 107 516-627 149-279 (299)
483 PHA02713 hypothetical protein; 42.7 5.4E+02 0.012 28.9 18.7 66 586-663 432-498 (557)
484 COG2133 Glucose/sorbosone dehy 42.6 4.4E+02 0.0096 28.0 15.5 44 586-629 342-388 (399)
485 KOG2079 Vacuolar assembly/sort 42.2 53 0.0012 38.5 6.1 93 522-630 99-197 (1206)
486 COG1520 FOG: WD40-like repeat 42.0 2.6E+02 0.0056 29.4 11.3 55 534-599 77-134 (370)
487 KOG1275 PAB-dependent poly(A) 41.0 4E+02 0.0086 31.2 12.3 170 348-541 158-340 (1118)
488 COG4590 ABC-type uncharacteriz 40.0 3.3E+02 0.0071 29.0 10.7 30 421-450 223-252 (733)
489 KOG0379 Kelch repeat-containin 39.3 3.2E+02 0.007 30.0 11.7 138 521-675 70-218 (482)
490 PF10313 DUF2415: Uncharacteri 36.9 1.3E+02 0.0029 20.3 5.1 29 560-595 3-34 (43)
491 TIGR03074 PQQ_membr_DH membran 36.8 7.6E+02 0.016 29.0 20.9 148 521-675 259-446 (764)
492 KOG2247 WD40 repeat-containing 36.0 6.8 0.00015 41.3 -1.7 137 424-577 40-179 (615)
493 PF14339 DUF4394: Domain of un 35.7 4.2E+02 0.0092 25.7 17.0 154 429-601 38-220 (236)
494 PF02402 Lysis_col: Lysis prot 34.5 29 0.00063 23.2 1.5 32 1-32 1-32 (46)
495 PF13570 PQQ_3: PQQ-like domai 34.1 67 0.0014 20.9 3.4 25 171-205 16-40 (40)
496 PHA02790 Kelch-like protein; P 33.8 6.7E+02 0.015 27.5 19.1 182 440-659 288-475 (480)
497 smart00284 OLF Olfactomedin-li 30.7 5.4E+02 0.012 25.4 15.7 143 331-494 83-253 (255)
498 PLN02153 epithiospecifier prot 29.3 6.5E+02 0.014 25.9 21.7 123 535-663 159-293 (341)
499 PF10584 Proteasome_A_N: Prote 28.2 22 0.00049 20.3 0.2 8 73-80 6-13 (23)
500 KOG1064 RAVE (regulator of V-A 27.8 3.3E+02 0.0072 34.7 9.6 142 483-658 2228-2370(2439)
No 1
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=278.91 Aligned_cols=452 Identities=20% Similarity=0.262 Sum_probs=332.6
Q ss_pred CCCCceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCC
Q 004971 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPP 105 (721)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (721)
++.++.|+|+ +.+|+|.+++.. |.++|||.+-+++.+|+|||||+
T Consensus 47 DI~GD~IiFt------~~DdlWe~slk~----g~~~ritS~lGVvnn~kf~pdGr------------------------- 91 (668)
T COG4946 47 DIYGDRIIFT------CCDDLWEYSLKD----GKPLRITSGLGVVNNPKFSPDGR------------------------- 91 (668)
T ss_pred cccCcEEEEE------echHHHHhhhcc----CCeeEEecccceeccccCCCCCc-------------------------
Confidence 6789999999 889999999988 99999999999999999999999
Q ss_pred CceEEEEeeec----CCceeEEeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEE
Q 004971 106 PLQLIYVTERN----GTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLI 180 (721)
Q Consensus 106 ~~~~~~~~~~~----g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~ 180 (721)
+|||+.-.- ...+||+++..+|+ ++| +| .+. .-++|. || .| ||+.|+
T Consensus 92 --kvaf~rv~~~ss~~taDly~v~~e~Ge----~kR--iTyfGr--~fT~Va-----------G~-----~~--dg~iiV 143 (668)
T COG4946 92 --KVAFSRVMLGSSLQTADLYVVPSEDGE----AKR--ITYFGR--RFTRVA-----------GW-----IP--DGEIIV 143 (668)
T ss_pred --EEEEEEEEecCCCccccEEEEeCCCCc----EEE--EEEecc--ccceee-----------cc-----CC--CCCEEE
Confidence 999953222 25679999998998 899 99 753 456666 99 99 999777
Q ss_pred EEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEec--CCCCCCcccceeeeeEEEEEcCC
Q 004971 181 YVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY--GNKGWDGEVEMLSTDIYIFLTRD 258 (721)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~--~~~~w~~~~~~~~~~i~~~d~~~ 258 (721)
++... .+ ...|..||.++.++....+|.-.+..+. +-.|| .++...+ +-+.||+|.+++.+.||+-...+
T Consensus 144 ~TD~~-tP---F~q~~~lYkv~~dg~~~e~LnlGpathi---v~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g 215 (668)
T COG4946 144 STDFH-TP---FSQWTELYKVNVDGIKTEPLNLGPATHI---VIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGG 215 (668)
T ss_pred EeccC-CC---cccceeeeEEccCCceeeeccCCceeeE---EEeCC-EEEEccCcccCcccccccCCccceEEEEecCC
Confidence 65333 22 2236799999999998888833332222 23477 4444333 55799999999999999877644
Q ss_pred CceeEEEeccC--CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-CCcccCceeecCCCCEE
Q 004971 259 GTQRVKIVENG--GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-GLHAFTPATSPGNNKFI 335 (721)
Q Consensus 259 g~~~~l~~~~~--~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dG~~l 335 (721)
...+++..-.+ .+|....+ |+|| +++.+|..+||.++..+. ..++.|.. ....+++ +. ||++|
T Consensus 216 ~tFeK~vdl~~~vS~PmIV~~-RvYF--lsD~eG~GnlYSvdldGk--------DlrrHTnFtdYY~R~~--ns-DGkrI 281 (668)
T COG4946 216 KTFEKFVDLDGNVSSPMIVGE-RVYF--LSDHEGVGNLYSVDLDGK--------DLRRHTNFTDYYPRNA--NS-DGKRI 281 (668)
T ss_pred cceeeeeecCCCcCCceEEcc-eEEE--EecccCccceEEeccCCc--------hhhhcCCchhcccccc--CC-CCcEE
Confidence 46666664333 36777766 9999 788899999997766552 56666654 3334443 44 99999
Q ss_pred EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE-cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc
Q 004971 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI-SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI 414 (721)
Q Consensus 336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (721)
+|. ..| .||++|.++.+.+.+... -+.. +++...+ +. +.+-
T Consensus 282 vFq--~~G----dIylydP~td~lekldI~--------lpl~rk~k~~k~-------------------~~----psky- 323 (668)
T COG4946 282 VFQ--NAG----DIYLYDPETDSLEKLDIG--------LPLDRKKKQPKF-------------------VN----PSKY- 323 (668)
T ss_pred EEe--cCC----cEEEeCCCcCcceeeecC--------Cccccccccccc-------------------cC----HHHh-
Confidence 994 333 399999998876655321 0110 1111000 00 0000
Q ss_pred eecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 415 ~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
....+.+ +|.++++++.++.++++...+-..++. .+.+.--.+.-|++.++.... +...+.||..+
T Consensus 324 ------ledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~------dgD~l~iyd~~ 390 (668)
T COG4946 324 ------LEDFAVV-NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN------DGDKLGIYDKD 390 (668)
T ss_pred ------hhhhccC-CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc------CCceEEEEecC
Confidence 0011222 488999999999999999888777776 566777778888887777652 33467776654
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEE
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWI 572 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l 572 (721)
. ++.+++...-+.+..+..+||||+++++.+ ..+||++|+++|. ++.+.... .-+..+.|+|++++|
T Consensus 391 ~------~e~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididngn---v~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 391 G------GEVKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred C------ceEEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCC---eeEecccccceeEEEEEcCCceeE
Confidence 3 266777777788999999999999999887 7899999999999 56665443 346789999999999
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
||+...+ --.+.|.++|+++++...+|. ......+|+|.|||++|+|.+.+.-
T Consensus 459 AYafP~g---y~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsL 511 (668)
T COG4946 459 AYAFPEG---YYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSL 511 (668)
T ss_pred EEecCcc---eeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEEEEEecccc
Confidence 9998764 345789999999999988886 3567789999999999999999873
No 2
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.95 E-value=1.4e-24 Score=213.23 Aligned_cols=431 Identities=17% Similarity=0.253 Sum_probs=299.7
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
.|.|-|..|+|++++ .||.+++..|+++++|.+-+....|.|||||+++||..- |.+. ..+..+
T Consensus 45 ~PDI~GD~IiFt~~D-----------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv----~~~s-s~~taD 108 (668)
T COG4946 45 NPDIYGDRIIFTCCD-----------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRV----MLGS-SLQTAD 108 (668)
T ss_pred CCcccCcEEEEEech-----------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEE----EecC-CCcccc
Confidence 685559999999988 899999999999999999999999999999999999532 1111 113589
Q ss_pred EEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971 251 IYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (721)
||+++.++|+.++++.-... ...|+|||+++.....- -.....+|++...+. ....+.-.. +.++
T Consensus 109 ly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGp--athi 178 (668)
T COG4946 109 LYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGP--ATHI 178 (668)
T ss_pred EEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCc--eeeE
Confidence 99999999999999855322 45899999977632111 123457887766653 233332221 1233
Q ss_pred eeecCCCCEEEEEEe---------cCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 326 ATSPGNNKFIAVATR---------RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 326 ~~sp~dG~~la~~~~---------~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
.+ . || .++...+ .+|+..+.||+=.-.....+++... ..++.+|.+- |.+++|.+...+.
T Consensus 179 v~-~-dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl---~~~vS~PmIV--~~RvYFlsD~eG~--- 247 (668)
T COG4946 179 VI-K-DG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL---DGNVSSPMIV--GERVYFLSDHEGV--- 247 (668)
T ss_pred EE-e-CC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeec---CCCcCCceEE--cceEEEEecccCc---
Confidence 33 3 66 4554432 2356666777654332234444433 5666677776 7899998876653
Q ss_pred CCcceeEEEeccCCCCc-ceecccCCCC-ceeCcCCCEEEEEeCCcEEEEECCCCceEEEeec-C----ce---------
Q 004971 397 DGNNQLLLENIKSPLPD-ISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFK-N----AF--------- 460 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~-~----~~--------- 460 (721)
.++|..++.+...+ -+.+ .... -..+.||++|+|...+.||++|.++...+.|.-+ . ..
T Consensus 248 ---GnlYSvdldGkDlrrHTnF--tdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psk 322 (668)
T COG4946 248 ---GNLYSVDLDGKDLRRHTNF--TDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSK 322 (668)
T ss_pred ---cceEEeccCCchhhhcCCc--hhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHH
Confidence 57888888765211 1111 0111 1457899999999999999999998877666511 0 00
Q ss_pred -eeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 461 -STVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 461 -~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
.-.|++ +|.++++++++ +..|.+.. .+ -..++... +.+..-.++-|++.++..... ...|-
T Consensus 323 yledfa~~~Gd~ia~VSRG--------kaFi~~~~--~~----~~iqv~~~-~~VrY~r~~~~~e~~vigt~d--gD~l~ 385 (668)
T COG4946 323 YLEDFAVVNGDYIALVSRG--------KAFIMRPW--DG----YSIQVGKK-GGVRYRRIQVDPEGDVIGTND--GDKLG 385 (668)
T ss_pred hhhhhccCCCcEEEEEecC--------cEEEECCC--CC----eeEEcCCC-CceEEEEEccCCcceEEeccC--CceEE
Confidence 011333 78899998853 33333322 21 33333333 346677788888877776652 33788
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD 618 (721)
++|..+++ ++.+..+-+.+..+..||||+.++.+..+. +|+++|+++|.++.+-.. ..+.+..+.|+|+
T Consensus 386 iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~-------el~vididngnv~~idkS-~~~lItdf~~~~n 454 (668)
T COG4946 386 IYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRF-------ELWVIDIDNGNVRLIDKS-EYGLITDFDWHPN 454 (668)
T ss_pred EEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCce-------EEEEEEecCCCeeEeccc-ccceeEEEEEcCC
Confidence 99999998 788888778888999999999999888774 999999999998877654 5677889999999
Q ss_pred CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC-----cCCccccc
Q 004971 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR-----FIRPVDVE 684 (721)
Q Consensus 619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~-----~l~~~~~~ 684 (721)
+++|+++-..+-. .++|.++|+++++.-.+|....-+.+|+|.|+ +|+..+++
T Consensus 455 sr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLd 512 (668)
T COG4946 455 SRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLD 512 (668)
T ss_pred ceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccC
Confidence 9999997654422 14699999999999999987778899999995 56666665
No 3
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=2.7e-25 Score=236.92 Aligned_cols=267 Identities=20% Similarity=0.328 Sum_probs=196.7
Q ss_pred CCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEE--EEE----eCCcEEEEECCCCceEE
Q 004971 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRI--AFV----EFPGVYVVNSDGSNRRQ 453 (721)
Q Consensus 381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~l--a~~----~~~~l~v~d~~~g~~~~ 453 (721)
+++|+|+.............+||+.+.++. ...++........|.|||||+.+ +|+ +..+||++++++++.++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~ 225 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK 225 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE
Confidence 678888766544221111257888888765 33444444445679999999874 445 25689999999999888
Q ss_pred Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE--EEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEE
Q 004971 454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS--INVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~ 528 (721)
+. .+....+.|||||++|+|++.. .+...+|. ++...+ ..+..++++... .....++|||||++|+|.
T Consensus 226 lt~~~g~~~~p~wSPDG~~Laf~s~~------~g~~di~~~~~~~~~g-~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 226 ILALQGNQLMPTFSPRKKLLAFISDR------YGNPDLFIQSFSLETG-AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred eecCCCCccceEECCCCCEEEEEECC------CCCcceeEEEeecccC-CCCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 87 5667789999999999999742 22223333 333321 012456676543 345679999999999999
Q ss_pred EeeCCceeEEEEECCC--CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971 529 STRTGYKNLYIMDAEG--GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 606 (721)
+++++..+||+++++. ++ .+.++.....+..+.|||||++|+|..... +..+|++||+++++.++++..
T Consensus 299 s~~~g~~~ly~~~~~~~g~~---~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~~Lt~~-- 369 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPEGQS---PRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDYQLTTS-- 369 (428)
T ss_pred ECCCCCceEEEEECcccccc---eEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeEEccCC--
Confidence 9887788999998863 33 566765544557899999999999998763 556899999999998888752
Q ss_pred CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 607 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
......+.|||||++|+|.....+. .+||++|+++++.++|+...+....|+|||.+
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~--------------~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNE--------------SELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 3456789999999999998776542 36999999999999999877777899999864
No 4
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=6.1e-25 Score=235.45 Aligned_cols=262 Identities=19% Similarity=0.294 Sum_probs=195.6
Q ss_pred CEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971 333 KFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411 (721)
Q Consensus 333 ~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (721)
++|+|+.... +.....|+++|.+..+.+.++.. ......+.|||||++|+|.+...+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~---~~~~~~p~wSPDG~~la~~s~~~g------------------- 221 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS---PQPLMSPAWSPDGSKLAYVTFESG------------------- 221 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecC---CCceeeeEEcCCCCEEEEEEecCC-------------------
Confidence 4677766532 22356799999987766566532 334556777777777776542111
Q ss_pred CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971 412 PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 412 ~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i 489 (721)
...|+++++.+++.+.+. .+....+.|||||++|+++.. ..+...|
T Consensus 222 --------------------------~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~------~~g~~~I 269 (429)
T PRK03629 222 --------------------------RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALS------KTGSLNL 269 (429)
T ss_pred --------------------------CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEc------CCCCcEE
Confidence 234666777777666655 344567899999999998763 2445568
Q ss_pred EEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
|.++.+++ ..++++........+.|||||++|+|.+++.+..+||++|+++++ ..+++........+.|||||
T Consensus 270 ~~~d~~tg----~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 270 YVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred EEEECCCC----CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCC
Confidence 88887764 677888776667889999999999999987777899999999887 56666544444679999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (721)
++|++..... +...|+++|+++++.+.++.. .....+.|||||++|++.+.+.+. ..|+
T Consensus 343 ~~Ia~~~~~~----g~~~I~~~dl~~g~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~--------------~~l~ 401 (429)
T PRK03629 343 KFMVMVSSNG----GQQHIAKQDLATGGVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMG--------------SVLN 401 (429)
T ss_pred CEEEEEEccC----CCceEEEEECCCCCeEEeCCC---CCCCCceECCCCCEEEEEEcCCCc--------------eEEE
Confidence 9999988763 456899999999988877632 235689999999999999987653 2599
Q ss_pred EEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 650 KIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 650 ~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
+++++|+..++|+.+.+....|+|+|.
T Consensus 402 ~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 402 LVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEECCCCCeEECccCCCCcCCcccCCC
Confidence 999999999999887777899999985
No 5
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=3.8e-25 Score=238.68 Aligned_cols=263 Identities=26% Similarity=0.451 Sum_probs=202.2
Q ss_pred CCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe
Q 004971 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~ 455 (721)
..+|+|.....+.. ....+|++.+.++.. ..++........+.|||||++|+|+. ...|++||+.+++.+++.
T Consensus 165 ~~~iafv~~~~~~~--~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 165 DTRIVYVAESGPKN--KRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CCeEEEEEeeCCCC--CcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence 45778876654311 001578888876553 23443344456789999999999983 468999999999888877
Q ss_pred --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
.+....+.|||||++|++... .++...||.++..++ ..++++.+......+.|||||++|+|.+++.+
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLS------QGGNTDIYTMDLRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEe------cCCCceEEEEECCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence 456678999999999998863 356678998888775 77888887766778999999999999998878
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 613 (721)
..+||++|+++++ .++++.+......+.|||||++|++..... +...|+++|++++..+.++. ......+
T Consensus 313 ~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----~~~~i~~~d~~~~~~~~lt~---~~~~~~p 382 (435)
T PRK05137 313 SPQLYVMNADGSN---PRRISFGGGRYSTPVWSPRGDLIAFTKQGG----GQFSIGVMKPDGSGERILTS---GFLVEGP 382 (435)
T ss_pred CCeEEEEECCCCC---eEEeecCCCcccCeEECCCCCEEEEEEcCC----CceEEEEEECCCCceEeccC---CCCCCCC
Confidence 8899999999887 667775555556799999999999988653 45789999998877666653 2356789
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
.|||||+.|+|.+...+.. ....||++|+++++.++|+. .+....|+|+|.+
T Consensus 383 ~~spDG~~i~~~~~~~~~~-----------~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp~~ 434 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSG-----------GAPKLYTVDLTGRNEREVPT-PGDASDPAWSPLL 434 (435)
T ss_pred eECCCCCEEEEEEccCCCC-----------CcceEEEEECCCCceEEccC-CCCccCcccCCCC
Confidence 9999999999988765421 01269999999999988885 5567899999853
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1e-22 Score=202.87 Aligned_cols=482 Identities=14% Similarity=0.143 Sum_probs=307.6
Q ss_pred CCCCceEEEEeecCCCcceeEEeccCCCCCCCCc-eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCC
Q 004971 26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN-EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDP 104 (721)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (721)
++-++.|.|. ...-++..+++. .. ...-+.|.-...-++|||.|-
T Consensus 27 dpkgd~ilY~------nGksv~ir~i~~----~~~~~iYtEH~~~vtVAkySPsG~------------------------ 72 (603)
T KOG0318|consen 27 DPKGDNILYT------NGKSVIIRNIDN----PASVDIYTEHAHQVTVAKYSPSGF------------------------ 72 (603)
T ss_pred CCCCCeEEEe------CCCEEEEEECCC----ccceeeeccccceeEEEEeCCCce------------------------
Confidence 4455667776 445678877765 33 455678877888899999995
Q ss_pred CCceEEEEeeecCCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEec
Q 004971 105 PPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVST 184 (721)
Q Consensus 105 ~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~ 184 (721)
+|+ +++..|+++||.-- .+ ..- |.. ..+.+++--.+..| ++ |+++|+.+.+
T Consensus 73 ---yiA-SGD~sG~vRIWdtt---~~----~hi--LKn---------ef~v~aG~I~Di~W-----d~--ds~RI~avGE 123 (603)
T KOG0318|consen 73 ---YIA-SGDVSGKVRIWDTT---QK----EHI--LKN---------EFQVLAGPIKDISW-----DF--DSKRIAAVGE 123 (603)
T ss_pred ---EEe-ecCCcCcEEEEecc---Cc----cee--eee---------eeeeccccccccee-----CC--CCcEEEEEec
Confidence 544 56677999999743 21 111 221 01122222234479 88 9999999887
Q ss_pred CCCCCCCCCccceEEEEeCCC------c-------------ceEee-c----------------------CCCCCccccc
Q 004971 185 HENPGTPRTSWAAVYSTELKT------G-------------LTRRL-T----------------------PYGVADFSPA 222 (721)
Q Consensus 185 ~~~~~~~~~~~~~l~~v~~~~------g-------------~~~~l-t----------------------~~~~~~~~p~ 222 (721)
+.+. +.++|..|..+ | ++.|+ | .|..-....+
T Consensus 124 Grer------fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 124 GRER------FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred Cccc------eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 6542 24666665321 1 11111 1 1222224457
Q ss_pred cCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe----ccCC--cceeccCCeEEEEeccCCCCcEEEEE
Q 004971 223 VSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV----ENGG--WPCWVDESTLFFHRKSEEDDWISVYK 296 (721)
Q Consensus 223 ~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~----~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~ 296 (721)
|||||+++|.+..+ ..|++||=.+|+..-... +.++ ..+|+||++-+++... +....||.
T Consensus 198 ysPDG~~Fat~gsD------------gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWd 263 (603)
T KOG0318|consen 198 YSPDGSRFATAGSD------------GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWD 263 (603)
T ss_pred ECCCCCeEEEecCC------------ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEE
Confidence 99999999998754 469999998888655443 2223 3599999875553222 45566665
Q ss_pred EecCC--------Cccee--------------------------ccccceEEeCCCCCcccCceeecCCCCEEEEEEecC
Q 004971 297 VILPQ--------TGLVS--------------------------TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP 342 (721)
Q Consensus 297 ~~~~~--------~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~ 342 (721)
+.... +..++ .+...+..+.+|.-.+..+.++| ||++|+..
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~Sg---- 338 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSG---- 338 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEee----
Confidence 53321 00000 01112223334445566778999 99888763
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceeccc
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRF 419 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~ 419 (721)
+.++.|.-||..+|..-.+.. ..|...+..++-+..+ .|+....++. +.+.++... .........
T Consensus 339 -syDG~I~~W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~-~~~t~g~Dd~---------l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 339 -SYDGHINSWDSGSGTSDRLAG-KGHTNQIKGMAASESG-ELFTIGWDDT---------LRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred -ccCceEEEEecCCcccccccc-ccccceEEEEeecCCC-cEEEEecCCe---------EEEEecccCcccccceeecCC
Confidence 356679999999887554431 2334445555555433 4555555554 444444322 111122334
Q ss_pred CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
....++..+||..++.+...+|.++.-.++ ...+. .-.....+.+||++.+++.. .+++++||.+.-+..
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~~~~~y~~s~vAv~~~~~~vaVGG-------~Dgkvhvysl~g~~l- 477 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSSIPIGYESSAVAVSPDGSEVAVGG-------QDGKVHVYSLSGDEL- 477 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCc-ceeeccccccceEEEcCCCCEEEEec-------ccceEEEEEecCCcc-
Confidence 445678888887777777778877763322 22222 34567899999999999985 578899999876543
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
.+...+..+.+.+..+++||||++|+.... ...+.+||+++.+. .......+...+..++||||.+.+|.++.+
T Consensus 478 --~ee~~~~~h~a~iT~vaySpd~~yla~~Da---~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 478 --KEEAKLLEHRAAITDVAYSPDGAYLAAGDA---SRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred --cceeeeecccCCceEEEECCCCcEEEEecc---CCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence 234456667778999999999999998877 78899999998874 233344566678899999999999999988
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
. .|++|+++...........|...++.+.|- |...|+.+..+..
T Consensus 552 t-------~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~ 595 (603)
T KOG0318|consen 552 T-------NVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN 595 (603)
T ss_pred c-------eEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce
Confidence 5 899999987655544444577778999997 5566777776654
No 7
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.3e-24 Score=233.26 Aligned_cols=256 Identities=28% Similarity=0.452 Sum_probs=197.0
Q ss_pred CEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe-
Q 004971 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY- 455 (721)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~- 455 (721)
.+|+|....... .++++.+..+.. ..++........++|||||++|+|.. ...|+++|+.+++.+.+.
T Consensus 164 ~~iayv~~~~~~------~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~ 237 (427)
T PRK02889 164 TRIAYVIKTGNR------YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN 237 (427)
T ss_pred cEEEEEEccCCc------cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec
Confidence 456665533221 467777765442 22333333455789999999999984 356999999999887776
Q ss_pred -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534 (721)
Q Consensus 456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~ 534 (721)
.+....+.|||||++|++... .++..+||.++..++ ..++++.+......+.|||||++|+|.+++.+.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~ 307 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALS------RDGNSQIYTVNADGS----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA 307 (427)
T ss_pred CCCCccceEECCCCCEEEEEEc------cCCCceEEEEECCCC----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC
Confidence 456678999999999998763 456789999998765 677887766666789999999999999988778
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
.+||++++.+++ ...++........++|||||++|+|..... +...|++||+.+++.+.++.. .....+.
T Consensus 308 ~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g~~~I~v~d~~~g~~~~lt~~---~~~~~p~ 377 (427)
T PRK02889 308 PQIYRMPASGGA---AQRVTFTGSYNTSPRISPDGKLLAYISRVG----GAFKLYVQDLATGQVTALTDT---TRDESPS 377 (427)
T ss_pred cEEEEEECCCCc---eEEEecCCCCcCceEECCCCCEEEEEEccC----CcEEEEEEECCCCCeEEccCC---CCccCce
Confidence 899999998877 555553333345789999999999988763 556899999999988877642 3457899
Q ss_pred ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
|+|||+.|+|.+.+.+. ..||+++++++..++++...+....|+|||..
T Consensus 378 ~spdg~~l~~~~~~~g~--------------~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~~ 426 (427)
T PRK02889 378 FAPNGRYILYATQQGGR--------------SVLAAVSSDGRIKQRLSVQGGDVREPSWGPFM 426 (427)
T ss_pred ECCCCCEEEEEEecCCC--------------EEEEEEECCCCceEEeecCCCCCCCCccCCCC
Confidence 99999999999987764 36999999888888887666777899999963
No 8
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=5.5e-24 Score=229.33 Aligned_cols=243 Identities=25% Similarity=0.374 Sum_probs=189.4
Q ss_pred ceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEE
Q 004971 400 NQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV 472 (721)
Q Consensus 400 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la 472 (721)
..+++.+..+. ...++........++|||||++|+|+. ...|+++++.+++.+.+. .+....+.|||||++|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 45777776544 223333333456789999999999984 457999999999887776 44556899999999999
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
+... .++...||.++..++ ..++++.+......++|||||++|+|.+++.+..+||++++.+++ .++
T Consensus 264 ~~~s------~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~ 330 (433)
T PRK04922 264 LTLS------RDGNPEIYVMDLGSR----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AER 330 (433)
T ss_pred EEEe------CCCCceEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEE
Confidence 8763 345567888887765 677787766566789999999999999988777899999999887 566
Q ss_pred CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
++........++|||||++|++..... +...|++||+.+++.+.++. ......+.|||||++|+|.+.+.+.
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d~~~g~~~~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~- 402 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGSG----GQYRIAVMDLSTGSVRTLTP---GSLDESPSFAPNGSMVLYATREGGR- 402 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECCC----CceeEEEEECCCCCeEECCC---CCCCCCceECCCCCEEEEEEecCCc-
Confidence 664433445799999999999987653 55689999999998887763 2345679999999999999887543
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
..||+++++++..++|+.+.+....|+|+|.
T Consensus 403 -------------~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 433 (433)
T PRK04922 403 -------------GVLAAVSTDGRVRQRLVSADGEVREPAWSPY 433 (433)
T ss_pred -------------eEEEEEECCCCceEEcccCCCCCCCCccCCC
Confidence 3699999999988999876667788999983
No 9
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=7.5e-24 Score=227.83 Aligned_cols=258 Identities=21% Similarity=0.333 Sum_probs=196.5
Q ss_pred CEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe-
Q 004971 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY- 455 (721)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~- 455 (721)
.+|+|........ ...++++.+..+.. ..++........+.|||||++|+|+. ...||++|+.+++.+.+.
T Consensus 183 ~riayv~~~~~~~---~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~ 259 (448)
T PRK04792 183 TRIAYVVVNDKDK---YPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS 259 (448)
T ss_pred CEEEEEEeeCCCC---CceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC
Confidence 4556655443211 01457777765542 22333333445789999999999983 347999999999887776
Q ss_pred -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534 (721)
Q Consensus 456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~ 534 (721)
.+....+.|||||++|+++.. .++...||.++..++ ..++++.+......++|||||++|+|.+.+.+.
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~dl~tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLS------KDGQPEIYVVDIATK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEe------CCCCeEEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 445568999999999999763 356778999988775 778888766667789999999999999988888
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
.+||++|+++++ ...++........++|||||++|+|..... +..+||++|+++++.+.++.. .....+.
T Consensus 330 ~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~~g~~~~lt~~---~~d~~ps 399 (448)
T PRK04792 330 PQIYRVNLASGK---VSRLTFEGEQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLETGAMQVLTST---RLDESPS 399 (448)
T ss_pred ceEEEEECCCCC---EEEEecCCCCCcCeeECCCCCEEEEEEecC----CceEEEEEECCCCCeEEccCC---CCCCCce
Confidence 899999999888 566653333335689999999999988753 557899999999988777632 2345789
Q ss_pred ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
|+|||+.|+|.+.+.+. ..||+++++|+..++|+...+....|+|||.
T Consensus 400 ~spdG~~I~~~~~~~g~--------------~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGK--------------QVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ECCCCCEEEEEEecCCc--------------eEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 99999999999887653 2699999999888899876666789999985
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1e-23 Score=224.86 Aligned_cols=263 Identities=21% Similarity=0.315 Sum_probs=196.1
Q ss_pred CCCEEEEEEecCCC----CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCE--EEEEEeeCCCCCCCCcceeEE
Q 004971 331 NNKFIAVATRRPTS----SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSR--VGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 331 dG~~la~~~~~~g~----~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~--l~~~~~~~~~~~~~~~~~l~~ 404 (721)
-+++|+|+....+. ....||++|.++++.++++.. ......|.|||||+. ++|.+...+. .++|+
T Consensus 145 ~~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~---~~~~~sP~wSPDG~~~~~~y~S~~~g~------~~I~~ 215 (428)
T PRK01029 145 SSGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQE---HSLSITPTWMHIGSGFPYLYVSYKLGV------PKIFL 215 (428)
T ss_pred ccCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccC---CCCcccceEccCCCceEEEEEEccCCC------ceEEE
Confidence 45788888654331 245799999998888777643 334568999999987 5556665542 67999
Q ss_pred EeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEE--EECCC---CceEEEee---cCceeeEEcCCCCeE
Q 004971 405 ENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYV--VNSDG---SNRRQVYF---KNAFSTVWDPVREAV 471 (721)
Q Consensus 405 ~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v--~d~~~---g~~~~l~~---~~~~~~~~spdg~~l 471 (721)
.++.++. ..++........++|||||++|+|.. ..++++ +++++ ++.++++. +....+.|||||++|
T Consensus 216 ~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 216 GSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred EECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence 9997663 34454555556789999999999984 336776 46554 45667762 234689999999999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
+|+++ .++...||.++.+.. .+..+.++........+.|||||++|+|.....+..+|+++|+++++ .+
T Consensus 296 af~s~------~~g~~~ly~~~~~~~--g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~ 364 (428)
T PRK01029 296 VFVSN------KDGRPRIYIMQIDPE--GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DY 364 (428)
T ss_pred EEEEC------CCCCceEEEEECccc--ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eE
Confidence 99984 245567888776431 02466777665566789999999999999887777899999999998 67
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG 619 (721)
.++........+.|+|||++|+|..... +...||++|+++++.++++. ..+....|+|||-.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~----g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNS----NESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 7776554557899999999999988763 55789999999999888875 34567789999854
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.7e-23 Score=221.37 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=187.5
Q ss_pred ceeEEEeccCCCCcceecccCCCCceeCcCCCE-EEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEE
Q 004971 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR-IAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV 472 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~-la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la 472 (721)
.+|++.+.++..............+.|||||++ ++|.. ..+||++|+.+++.+.++ .+....+.|||||++|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 567888776654332222223346899999996 66652 467999999999998887 44556789999999999
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
+... ..++..||.++.+++ ..++|+........+.|||||++|+|.+++.+..+||++|+++|+ .++
T Consensus 249 ~~~~------~~g~~~Iy~~dl~~g----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~r 315 (419)
T PRK04043 249 LTMA------PKGQPDIYLYDTNTK----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQ 315 (419)
T ss_pred EEEc------cCCCcEEEEEECCCC----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEe
Confidence 9874 345678999988775 778888876556778999999999999998888899999999988 666
Q ss_pred CcCCCcCceeeEEccCCCEEEEEEccCCC-C-CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNP-G-SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~-~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
++.... ..+.|||||++|+|....... . .+..+||++|+++++.++|+.. +....+.|||||+.|+|.+...+
T Consensus 316 lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred CccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCC
Confidence 765322 236999999999999875321 0 0236899999999999888753 34557999999999999987754
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCcee
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~ 673 (721)
. ..|++++++|....+|....+.+..|+|
T Consensus 391 ~--------------~~L~~~~l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 391 Q--------------SALGIIRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred c--------------EEEEEEecCCCeeEEeecCCCccCCCCC
Confidence 3 3699999999988888875666788887
No 12
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2.6e-23 Score=225.04 Aligned_cols=243 Identities=21% Similarity=0.360 Sum_probs=188.8
Q ss_pred eeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971 401 QLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 401 ~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~ 473 (721)
++++.+.++... .++........+.|||||++|+|+. ...|+++++++++.+.+. .+....+.|||||++|+|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 566666654422 2222222345689999999999983 357999999999888877 445567999999999998
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
... .++...||.++.+++ ..++++........+.|||||++|+|.+++.+..+||++++.+++ ..++
T Consensus 260 ~~~------~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~l 326 (430)
T PRK00178 260 VLS------KDGNPEIYVMDLASR----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERV 326 (430)
T ss_pred EEc------cCCCceEEEEECCCC----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEe
Confidence 863 345578888888775 677788766667789999999999999988888899999999888 5566
Q ss_pred cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 633 (721)
+........+.|||||++|+|..... +...|+++|+.+++.+.++.. .....+.|||||++|+|.+.+.+.
T Consensus 327 t~~~~~~~~~~~Spdg~~i~~~~~~~----~~~~l~~~dl~tg~~~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~-- 397 (430)
T PRK00178 327 TFVGNYNARPRLSADGKTLVMVHRQD----GNFHVAAQDLQRGSVRILTDT---SLDESPSVAPNGTMLIYATRQQGR-- 397 (430)
T ss_pred ecCCCCccceEECCCCCEEEEEEccC----CceEEEEEECCCCCEEEccCC---CCCCCceECCCCCEEEEEEecCCc--
Confidence 54333345689999999999998753 456899999999988877642 344578999999999999887653
Q ss_pred CCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
..||+++++++..++|+...+....|+|||.+
T Consensus 398 ------------~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~~ 429 (430)
T PRK00178 398 ------------GVLMLVSINGRVRLPLPTAQGEVREPSWSPYL 429 (430)
T ss_pred ------------eEEEEEECCCCceEECcCCCCCcCCCccCCCC
Confidence 36999999988888888666667889999864
No 13
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=7.3e-23 Score=220.11 Aligned_cols=257 Identities=22% Similarity=0.291 Sum_probs=186.7
Q ss_pred CCEEEEEEecCC-CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 332 NKFIAVATRRPT-SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 332 G~~la~~~~~~g-~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
+++|+|+....+ ..+..|++||.+....+.+.. +...+..+.|||||++|+|.+....
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~---~~~~v~~p~wSPDG~~la~~s~~~~------------------ 226 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNR---SSQPLMSPAWSPDGSKLAYVSFENK------------------ 226 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEecc---CCCccccceEcCCCCEEEEEEecCC------------------
Confidence 457888765432 335789999987665444432 1233455666666666665432211
Q ss_pred CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971 411 LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488 (721)
Q Consensus 411 ~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 488 (721)
...|++||+.+++.+.+. .+....+.|||||++|+++.. .++...
T Consensus 227 ---------------------------~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~------~~g~~~ 273 (429)
T PRK01742 227 ---------------------------KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS------KDGVLN 273 (429)
T ss_pred ---------------------------CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe------cCCcEE
Confidence 124677777766655554 344557899999999999762 356678
Q ss_pred EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD 568 (721)
||.++.+++ ..++++.+......+.|||||++|+|.+++.+..+||.++..++. ...+. ... ..+.||||
T Consensus 274 Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~-~~~--~~~~~SpD 343 (429)
T PRK01742 274 IYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLVG-GRG--YSAQISAD 343 (429)
T ss_pred EEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEec-CCC--CCccCCCC
Confidence 999988765 677888777677889999999999999988888899999998776 44443 222 45789999
Q ss_pred CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
|++|++...+ .+++||+.+++.+.++.. .....+.|+|||++|++.+.+++.. .+
T Consensus 344 G~~ia~~~~~--------~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~--------------~l 398 (429)
T PRK01742 344 GKTLVMINGD--------NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGK--------------VL 398 (429)
T ss_pred CCEEEEEcCC--------CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCce--------------EE
Confidence 9999998764 688899999887766532 2346799999999999998876532 47
Q ss_pred EEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 649 FKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 649 ~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
++++++|+..++|+.+.+....|+|||.+
T Consensus 399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 399 QLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 78888898899998877778899999963
No 14
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=8.3e-23 Score=220.50 Aligned_cols=258 Identities=21% Similarity=0.342 Sum_probs=193.8
Q ss_pred CEEEEEEecCCCC--eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 333 KFIAVATRRPTSS--YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 333 ~~la~~~~~~g~~--~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
.+|+|+....+.. ...|+++|.++...+.++.. ...+..+.|||||++|+|.+...+. ..++++++.++
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~---~~~v~~p~wSpDG~~lay~s~~~g~------~~i~~~dl~~g 236 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDG---SSLVLTPRFSPNRQEITYMSYANGR------PRVYLLDLETG 236 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecC---CCCeEeeEECCCCCEEEEEEecCCC------CEEEEEECCCC
Confidence 4788876654422 46799999987776666532 4567789999999999998765432 57899998766
Q ss_pred CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
.. .+.........+.|||||++|++.. ..+||++|+++++.++++ .+....+.|||||++|+|.++ .
T Consensus 237 ~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~------~ 310 (435)
T PRK05137 237 QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESD------R 310 (435)
T ss_pred cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEEC------C
Confidence 32 2333333445789999999998873 467999999999988887 334567999999999999984 3
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
.+...||.++.+++ ..++++........+.|||||++|++.....+..+|+++|++++. .+.++.. ..+..+
T Consensus 311 ~g~~~Iy~~d~~g~----~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~-~~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGS----NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG-FLVEGP 382 (435)
T ss_pred CCCCeEEEEECCCC----CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC-CCCCCC
Confidence 34567888887764 677787665556679999999999999876666799999998776 5556543 345789
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
.|||||+.|+|....... .+...||++|+++++.+.+.. .+....|+|||
T Consensus 383 ~~spDG~~i~~~~~~~~~-~~~~~L~~~dl~g~~~~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGS-GGAPKLYTVDLTGRNEREVPT---PGDASDPAWSP 432 (435)
T ss_pred eECCCCCEEEEEEccCCC-CCcceEEEEECCCCceEEccC---CCCccCcccCC
Confidence 999999999998875310 011589999999988776652 34578899997
No 15
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=6e-22 Score=212.35 Aligned_cols=261 Identities=21% Similarity=0.313 Sum_probs=188.5
Q ss_pred CeEEEEecc-CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC
Q 004971 278 STLFFHRKS-EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK 356 (721)
Q Consensus 278 g~l~~~~~~-~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t 356 (721)
.+++|.... +.....+||.+ +.++. ..++++........++||| ||++|+|.+...+ ...|+++|+.+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~-d~dg~-------~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g--~~~i~i~dl~~ 232 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVS-DYDGY-------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESG--RSALVIQTLAN 232 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEE-cCCCC-------CCEEeecCCCceeeeEEcC-CCCEEEEEEecCC--CcEEEEEECCC
Confidence 366664332 21224578844 43333 4566666665677999999 9999999865433 35699999998
Q ss_pred CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE
Q 004971 357 NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436 (721)
Q Consensus 357 g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~ 436 (721)
|+.+.+... ......+.|||||++|++..... |
T Consensus 233 G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~--------------------------------------g------ 265 (429)
T PRK03629 233 GAVRQVASF---PRHNGAPAFSPDGSKLAFALSKT--------------------------------------G------ 265 (429)
T ss_pred CCeEEccCC---CCCcCCeEECCCCCEEEEEEcCC--------------------------------------C------
Confidence 876666533 22234567777777766642211 1
Q ss_pred eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971 437 EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514 (721)
Q Consensus 437 ~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 514 (721)
...||++|+++++.++++ ......+.|||||++|+|+++ ..+..+||.++.+++ ..++++.......
T Consensus 266 -~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~------~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~ 334 (429)
T PRK03629 266 -SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSD------QAGRPQVYKVNINGG----APQRITWEGSQNQ 334 (429)
T ss_pred -CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeC------CCCCceEEEEECCCC----CeEEeecCCCCcc
Confidence 124888888888877777 335678999999999999984 335678999988765 6677766555566
Q ss_pred ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
.+.|||||++|++.+...+..+|+++|+++++ .+.++.. .....+.|||||++|+|.+.++ +...|++++++
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~----~~~~l~~~~~~ 406 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT-FLDETPSIAPNGTMVIYSSSQG----MGSVLNLVSTD 406 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEeCCC-CCCCCceECCCCCEEEEEEcCC----CceEEEEEECC
Confidence 79999999999999877667789999999988 6677643 3346799999999999999874 55679999998
Q ss_pred CCceEEeeecCCCCCcCCeEECC
Q 004971 595 GTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 595 ~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
++..+++.. +.+.+..|+|||
T Consensus 407 G~~~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECcc--CCCCcCCcccCC
Confidence 887777753 566788999998
No 16
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.2e-22 Score=215.64 Aligned_cols=256 Identities=24% Similarity=0.375 Sum_probs=191.8
Q ss_pred CEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 333 KFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 333 ~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
.+|+|+..... .....|+++|..+++.+.++.. ...+..++|||||++|+|.+..... ..+++.++.++
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~---~~~v~~p~wSpDg~~la~~s~~~~~------~~l~~~dl~~g 238 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRS---AEPILSPAWSPDGKKLAYVSFERGR------SAIYVQDLATG 238 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecC---CCccccccCCCCCCEEEEEecCCCC------cEEEEEECCCC
Confidence 35777654322 2345799999987766666532 4456789999999999998765431 56888888765
Q ss_pred CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEee--cCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
.. .+.........+.|||||++|++.. ...||++|+++++.++++. .....+.|+|||++|+|.++ .
T Consensus 239 ~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd------~ 312 (433)
T PRK04922 239 QRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSD------R 312 (433)
T ss_pred CEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC------C
Confidence 33 2332333344689999999998872 3479999999999888872 34567999999999999974 3
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
.+...||.++.+++ ..++++........++|||||++|++.+..++..+|++||+.+++ .+.++.+. ....+
T Consensus 313 ~g~~~iy~~dl~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~~-~~~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGG----SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPGS-LDESP 384 (433)
T ss_pred CCCceEEEEECCCC----CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCCCC-CCCCc
Confidence 45568888888764 666776555455679999999999998765556789999999887 66777554 34679
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
.|||||++|+|..... +...||+++++++..++++. +.+....|+|||
T Consensus 385 ~~spdG~~i~~~s~~~----g~~~L~~~~~~g~~~~~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 385 SFAPNGSMVLYATREG----GRGVLAAVSTDGRVRQRLVS--ADGEVREPAWSP 432 (433)
T ss_pred eECCCCCEEEEEEecC----CceEEEEEECCCCceEEccc--CCCCCCCCccCC
Confidence 9999999999998873 66789999998877776753 346678899997
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.8e-22 Score=214.25 Aligned_cols=253 Identities=22% Similarity=0.371 Sum_probs=189.4
Q ss_pred EEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-
Q 004971 334 FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP- 412 (721)
Q Consensus 334 ~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 412 (721)
+|+|..... ...+|+++|.+....+.+... ...+..++|||||++|+|.+..... ..+|++++.++..
T Consensus 165 ~iayv~~~~--~~~~L~~~D~dG~~~~~l~~~---~~~v~~p~wSPDG~~la~~s~~~~~------~~I~~~dl~~g~~~ 233 (427)
T PRK02889 165 RIAYVIKTG--NRYQLQISDADGQNAQSALSS---PEPIISPAWSPDGTKLAYVSFESKK------PVVYVHDLATGRRR 233 (427)
T ss_pred EEEEEEccC--CccEEEEECCCCCCceEeccC---CCCcccceEcCCCCEEEEEEccCCC------cEEEEEECCCCCEE
Confidence 577776432 245699999876655555432 4456789999999999998765431 5689999876633
Q ss_pred cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 413 DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 413 ~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
.+.........++|||||++|++.. ..+||++|++++..++++ .+....+.|||||++|+|+++ ..+.
T Consensus 234 ~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~------~~g~ 307 (427)
T PRK02889 234 VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD------RGGA 307 (427)
T ss_pred EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEec------CCCC
Confidence 2332333445689999999999862 357999999988888877 334567999999999999874 3456
Q ss_pred EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S 566 (721)
..||.++.+++ ..++++........++|||||++|++.+...+..+|++||+.+++ .+.++.... ...+.|+
T Consensus 308 ~~Iy~~~~~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~~~-~~~p~~s 379 (427)
T PRK02889 308 PQIYRMPASGG----AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---VTALTDTTR-DESPSFA 379 (427)
T ss_pred cEEEEEECCCC----ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC---eEEccCCCC-ccCceEC
Confidence 78999987764 566666544445678999999999999876666789999999887 667765433 4689999
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
|||+.|+|..... +...|+++++++...+++.. +.+....|+|||
T Consensus 380 pdg~~l~~~~~~~----g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~wsp 424 (427)
T PRK02889 380 PNGRYILYATQQG----GRSVLAAVSSDGRIKQRLSV--QGGDVREPSWGP 424 (427)
T ss_pred CCCCEEEEEEecC----CCEEEEEEECCCCceEEeec--CCCCCCCCccCC
Confidence 9999999999874 66789999997765555543 456778899998
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.3e-23 Score=197.13 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=225.1
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+.+|+..+..++||| +|++|+. |+.+..+++||+.+.. ++....+|...+.+++|||||+.|+....++.
T Consensus 111 ~~GH~e~Vl~~~fsp-~g~~l~t-----GsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~-- 180 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSP-TGSRLVT-----GSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS-- 180 (480)
T ss_pred cCCCCCcEEEEEecC-CCceEEe-----cCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCe--
Confidence 345666777889999 9999987 5567779999999876 55555778888999999999999998766665
Q ss_pred CCCCcceeEEEeccCCCC---cceecccCCCCcee-----CcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceee
Q 004971 395 REDGNNQLLLENIKSPLP---DISLFRFDGSFPSF-----SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFST 462 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~-----SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~ 462 (721)
|.+++.+.+.. .+.........++| .|..++||..+ ++.+.+||+..+....+. ...++.+
T Consensus 181 -------I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 181 -------IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred -------EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 55555444322 11212222233444 56777888774 889999999988765554 4567888
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce-----------EEccCCCE-------
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP-----------SVSPDGKW------- 524 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~SpDg~~------- 524 (721)
.|--+| +.|.. ..+..+++|+..... ..+.|..+...+..+ +|.|-|++
T Consensus 254 rwGG~g--liySg------S~DrtIkvw~a~dG~-----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 254 RWGGEG--LIYSG------SQDRTIKVWRALDGK-----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EEcCCc--eEEec------CCCceEEEEEccchh-----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 885444 55554 368899999987522 344455554333333 34444554
Q ss_pred ------------------EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 525 ------------------IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 525 ------------------l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
|+..++ +..+++|+....+ +.+.+++.+..-++++.||||+++|+.++.+.
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsD---d~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk------- 389 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSD---DFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDK------- 389 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecC---CceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeeccc-------
Confidence 887777 7899999976433 23778888888889999999999999999885
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCC
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNS 665 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~ 665 (721)
.|.+|+..+|+....+. +|-..++.++||.|.+.|+..+.+.+ |.+|+..++++. -|..|.
T Consensus 390 SVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~SkDsT-----------------LKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSKDST-----------------LKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEEEcCCCce-----------------EEEEEeeeeeecccCCCCC
Confidence 89999999997655444 36778899999999999988887775 889999998875 788888
Q ss_pred CCCCCceecCCcC
Q 004971 666 FEDGTPAWGPRFI 678 (721)
Q Consensus 666 ~~~~~~~~sp~~l 678 (721)
-.+....|+|+.-
T Consensus 452 DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQ 464 (480)
T ss_pred ceEEEEEecCCCc
Confidence 8899999999853
No 19
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=9.1e-22 Score=211.73 Aligned_cols=255 Identities=22% Similarity=0.339 Sum_probs=190.9
Q ss_pred EEEEEEecCC-CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC
Q 004971 334 FIAVATRRPT-SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP 412 (721)
Q Consensus 334 ~la~~~~~~g-~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 412 (721)
+++|.....+ .....|+++|.+..+.+.+... ...+..+.|||||++|+|.+...+. .+||+.++.++..
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~---~~~~~~p~wSPDG~~La~~s~~~g~------~~L~~~dl~tg~~ 254 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRS---PEPLMSPAWSPDGRKLAYVSFENRK------AEIFVQDIYTQVR 254 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCCCCceEeecC---CCcccCceECCCCCEEEEEEecCCC------cEEEEEECCCCCe
Confidence 5666654432 2245799999887766666543 4456789999999999998765431 5799999876532
Q ss_pred -cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEee--cCceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971 413 -DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS 485 (721)
Q Consensus 413 -~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~~~~ 485 (721)
.++........++|||||++|++.. ...||++|+++++.++++. .....+.|||||++|+|.+. ..+
T Consensus 255 ~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~------~~g 328 (448)
T PRK04792 255 EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSE------RGG 328 (448)
T ss_pred EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC------CCC
Confidence 2333333344689999999999872 3469999999999888873 34578999999999999874 345
Q ss_pred cEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEE
Q 004971 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565 (721)
Q Consensus 486 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~ 565 (721)
...||.++..++ +.++++........++|||||++|+|.+...+..+|+++|+++++ +..++... ....+.|
T Consensus 329 ~~~Iy~~dl~~g----~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~~-~d~~ps~ 400 (448)
T PRK04792 329 KPQIYRVNLASG----KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTSTR-LDESPSV 400 (448)
T ss_pred CceEEEEECCCC----CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccCCC-CCCCceE
Confidence 678999998765 667776544445568999999999998876667799999999987 56676543 2357899
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
+|||++|+|....+ +...||+++.+++..+++.. ..+....|+|||
T Consensus 401 spdG~~I~~~~~~~----g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 401 APNGTMVIYSTTYQ----GKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred CCCCCEEEEEEecC----CceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 99999999999774 66789999998776666653 345678899998
No 20
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.2e-21 Score=207.24 Aligned_cols=258 Identities=12% Similarity=0.128 Sum_probs=188.1
Q ss_pred ceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCce-
Q 004971 30 SSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQ- 108 (721)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (721)
.+++|+...+......||+.+.++ .++++++.+. ....|+|||||+ +
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg----~~~~~~~~~~-~~~~p~wSpDG~---------------------------~~ 202 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTL----TYQKVIVKGG-LNIFPKWANKEQ---------------------------TA 202 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCC----CceeEEccCC-CeEeEEECCCCC---------------------------cE
Confidence 467777654333456899999988 8888888875 778999999998 8
Q ss_pred EEEEeeecCCceeEEeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCC
Q 004971 109 LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHEN 187 (721)
Q Consensus 109 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~ 187 (721)
++|++...+..+||++++.+|+ .++ |+ ... ..... .| +| ||++|+|.....+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~----~~~--lt~~~g---~~~~~-----------~~-----SP--DG~~la~~~~~~g 255 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGK----KEK--IASSQG---MLVVS-----------DV-----SK--DGSKLLLTMAPKG 255 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCc----EEE--EecCCC---cEEee-----------EE-----CC--CCCEEEEEEccCC
Confidence 5555554467899999988877 555 66 221 11112 68 99 9999999887654
Q ss_pred CCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec
Q 004971 188 PGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE 267 (721)
Q Consensus 188 ~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~ 267 (721)
. .+||.++++++..++||........|.|||||++|+|.+++.+ ..+||++++++|+.++++..
T Consensus 256 ~-------~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g---------~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 256 Q-------PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG---------YPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred C-------cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC---------CceEEEEECCCCCeEeCccC
Confidence 2 3999999999999999987766677899999999999887654 47999999999999888865
Q ss_pred cCCcceeccCCe-EEEEeccCCC----CcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecC
Q 004971 268 NGGWPCWVDEST-LFFHRKSEED----DWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP 342 (721)
Q Consensus 268 ~~~~~~ws~dg~-l~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~ 342 (721)
....+.|+|||+ ++|....... +..+||.+...+ + ..++++... ....+.||| ||+.|+|.....
T Consensus 320 g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-------~~~~LT~~~-~~~~p~~SP-DG~~I~f~~~~~ 389 (419)
T PRK04043 320 GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-D-------YIRRLTANG-VNQFPRFSS-DGGSIMFIKYLG 389 (419)
T ss_pred CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-C-------CeEECCCCC-CcCCeEECC-CCCEEEEEEccC
Confidence 434569999987 5664332211 336788555444 3 577777654 345799999 999999987653
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEE
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~ 377 (721)
....|++++++......+.. ..+.+..|+|
T Consensus 390 --~~~~L~~~~l~g~~~~~l~~---~~g~~~~p~W 419 (419)
T PRK04043 390 --NQSALGIIRLNYNKSFLFPL---KVGKIQSIDW 419 (419)
T ss_pred --CcEEEEEEecCCCeeEEeec---CCCccCCCCC
Confidence 34569999998765555542 1344555554
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=3.2e-21 Score=208.70 Aligned_cols=256 Identities=23% Similarity=0.348 Sum_probs=190.1
Q ss_pred CEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 333 KFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 333 ~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
.+|+|...... ....+|+++|.++++.+.+... ...+..+.|||||++|+|.+..... ..+++.++.++
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~---~~~~~~p~wSpDG~~la~~s~~~~~------~~l~~~~l~~g 233 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQS---REPILSPRWSPDGKRIAYVSFEQKR------PRIFVQNLDTG 233 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecC---CCceeeeeECCCCCEEEEEEcCCCC------CEEEEEECCCC
Confidence 35777654322 2344699999987776666532 3456789999999999998765431 57899988765
Q ss_pred CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
.. .+.........+.|||||++|+|.. ...||++|+++++.++++ ......+.|||||++|+|.++ .
T Consensus 234 ~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~------~ 307 (430)
T PRK00178 234 RREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSD------R 307 (430)
T ss_pred CEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEEC------C
Confidence 32 3333333344689999999999872 347999999999888887 334567999999999999874 3
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
.+...||.++..++ ..++++........+.|||||++|+|.....+..+|+++|+.+++ .+.++... ....+
T Consensus 308 ~g~~~iy~~d~~~g----~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~~-~~~~p 379 (430)
T PRK00178 308 GGKPQIYKVNVNGG----RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDTS-LDESP 379 (430)
T ss_pred CCCceEEEEECCCC----CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---EEEccCCC-CCCCc
Confidence 45668888887664 666666544445678999999999999876666789999999987 66776543 33578
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
.|||||++|+|...+. +...||+++++++..+.+.. ..+.+..|+|||
T Consensus 380 ~~spdg~~i~~~~~~~----g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~ws~ 427 (430)
T PRK00178 380 SVAPNGTMLIYATRQQ----GRGVLMLVSINGRVRLPLPT--AQGEVREPSWSP 427 (430)
T ss_pred eECCCCCEEEEEEecC----CceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 9999999999999874 66789999998876666653 456678899997
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=7.5e-20 Score=182.62 Aligned_cols=435 Identities=16% Similarity=0.113 Sum_probs=259.9
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
.| -|+.|+|.... .++..+++.... ...|.|........+||.|.|+|.... .+
T Consensus 27 dp--kgd~ilY~nGk-----------sv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~------------sG 81 (603)
T KOG0318|consen 27 DP--KGDNILYTNGK-----------SVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDV------------SG 81 (603)
T ss_pred CC--CCCeEEEeCCC-----------EEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCC------------cC
Confidence 56 79999997544 788888876654 456778877788899999999988432 35
Q ss_pred eEEEEEcCCCceeEEE------eccCCcceeccCCe-EEEEeccCCCCcEEEEEEecCCCcc-eec-----------ccc
Q 004971 250 DIYIFLTRDGTQRVKI------VENGGWPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGL-VST-----------ESV 310 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~------~~~~~~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~-~~~-----------~~~ 310 (721)
.|.+|+....+ ..|- ..+-...+|+.|++ |.+. -..++....++ +.+.+... +.+ ...
T Consensus 82 ~vRIWdtt~~~-hiLKnef~v~aG~I~Di~Wd~ds~RI~av-GEGrerfg~~F-~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKE-HILKNEFQVLAGPIKDISWDFDSKRIAAV-GEGRERFGHVF-LWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCcc-eeeeeeeeecccccccceeCCCCcEEEEE-ecCccceeEEE-EecCCCccceeeccceeEeeeeccCC
Confidence 78888874422 2111 12223568999976 4442 11111111222 11110000 000 000
Q ss_pred ceEEe-------------------C----CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eeeccc
Q 004971 311 SIQRV-------------------T----PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFV 366 (721)
Q Consensus 311 ~~~~~-------------------~----~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~~ 366 (721)
++.++ . .|...+..+.+|| ||++++.+. .++.+++||-.+|+.. .+....
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEec-----CCccEEEEcCCCccEEEEecCCC
Confidence 11111 0 1122355678999 999888754 4456999999999732 233234
Q ss_pred CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceeccc-CC--CCceeCcCCCEEEEE-eCCcEE
Q 004971 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF-DG--SFPSFSPKGDRIAFV-EFPGVY 442 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~SpDG~~la~~-~~~~l~ 442 (721)
.|.+.+..++||||+++++.++.+.. .++|-.....-...+..... .. -..-|- .+ .|+.+ ..+.|-
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt-------~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd-~lItVSl~G~in 303 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKT-------IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD-HLITVSLSGTIN 303 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCce-------EEEEEeeccceEEEeecCCchhceEEEEEEe-CC-eEEEEEcCcEEE
Confidence 67888999999999999999988877 44554432211111111110 00 113454 33 45444 477888
Q ss_pred EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCC-------------CCCCCCcEEEEEEEccC----------
Q 004971 443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPE-------------FASESSEVDIISINVDD---------- 496 (721)
Q Consensus 443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~-------------~~~~~~~~~i~~~~~~~---------- 496 (721)
.++.+...+..+. ...++.+..+||+++|+..+.... +........|-.+...+
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 8888776643333 457889999999999887753210 00000011111111111
Q ss_pred ----------C--C---------Ccc-----------------ceEEcccC--------CCCCcceEEccCCCEEEEEEe
Q 004971 497 ----------V--D---------GVS-----------------AVRRLTTN--------GKNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 497 ----------~--~---------~~~-----------------~~~~l~~~--------~~~~~~~~~SpDg~~l~~~s~ 530 (721)
. . ++. .+..|... .......+++||++.+++...
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 0 0 000 00000000 122344688999998888876
Q ss_pred eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610 (721)
Q Consensus 531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 610 (721)
+..|+++.+.+++......+..+...++.+++||||++|+.+.... .+.+||+.+++.....-..|...+
T Consensus 464 ---Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r-------kvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 464 ---DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR-------KVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred ---cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC-------cEEEEEcccCceecceeeeeeeeE
Confidence 6779999998877544556667778889999999999999988764 899999999876322111267788
Q ss_pred CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec-cCCCCCCCceecC
Q 004971 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT-QNSFEDGTPAWGP 675 (721)
Q Consensus 611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt-~~~~~~~~~~~sp 675 (721)
..++||||.+.++..+-+.. |++|+.+..... .+. .|..++....|--
T Consensus 534 ~~~aWsP~n~~vATGSlDt~-----------------Viiysv~kP~~~i~iknAH~~gVn~v~wld 583 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTN-----------------VIIYSVKKPAKHIIIKNAHLGGVNSVAWLD 583 (603)
T ss_pred EEEEeCCCceEEEeccccce-----------------EEEEEccChhhheEeccccccCceeEEEec
Confidence 99999999999998887764 888887664333 222 3555677777743
No 23
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-22 Score=192.63 Aligned_cols=305 Identities=15% Similarity=0.123 Sum_probs=215.6
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
.+|+|+|+.+++ ...|..+++|+..... .......|...+..++||| ||++||. |..++.|.+
T Consensus 121 ~~fsp~g~~l~t--GsGD~TvR~WD~~TeT---------p~~t~KgH~~WVlcvawsP-Dgk~iAS-----G~~dg~I~l 183 (480)
T KOG0271|consen 121 VQFSPTGSRLVT--GSGDTTVRLWDLDTET---------PLFTCKGHKNWVLCVAWSP-DGKKIAS-----GSKDGSIRL 183 (480)
T ss_pred EEecCCCceEEe--cCCCceEEeeccCCCC---------cceeecCCccEEEEEEECC-Ccchhhc-----cccCCeEEE
Confidence 489999987773 4447888999665544 4455567777788999999 9999988 345667999
Q ss_pred EECCCCceEEeecccCCCCcccCcEEc-----CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCc
Q 004971 352 FDLVKNKFIELTRFVSPKTHHLNPFIS-----PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFP 424 (721)
Q Consensus 352 ~dl~tg~~~~l~~~~~~~~~~~~~~~S-----pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ 424 (721)
||.++|+.. ...+.+|...+..++|- |..++|+..+.++. +.++++..+.. .+......+..+
T Consensus 184 wdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~---------vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 184 WDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS---------VRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred ecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCCCC---------EEEEEccCceEEEEeccCccceEEE
Confidence 999999742 23345677778888884 56777777666665 33344333211 112222234456
Q ss_pred eeCcCCCEEEEE--eCCcEEEEECCCCceEE-Ee--ecCceee-----------EEcCCCCe------------------
Q 004971 425 SFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ-VY--FKNAFST-----------VWDPVREA------------------ 470 (721)
Q Consensus 425 ~~SpDG~~la~~--~~~~l~v~d~~~g~~~~-l~--~~~~~~~-----------~~spdg~~------------------ 470 (721)
.|.-+| ++|. .+..|.+|+...|...+ +. ...+..+ +|.|.|++
T Consensus 254 rwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 254 RWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 776555 4554 37889999988776422 22 1223333 34454544
Q ss_pred -------EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 471 -------VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 471 -------la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
|+..+ ++....+|.-..... .+.+++.+...+.++.||||+++|+.++. +..+.+|+-.
T Consensus 332 ~~~~~erlVSgs-------Dd~tlflW~p~~~kk----pi~rmtgHq~lVn~V~fSPd~r~IASaSF---DkSVkLW~g~ 397 (480)
T KOG0271|consen 332 LKDSGERLVSGS-------DDFTLFLWNPFKSKK----PITRMTGHQALVNHVSFSPDGRYIASASF---DKSVKLWDGR 397 (480)
T ss_pred hccCcceeEEec-------CCceEEEeccccccc----chhhhhchhhheeeEEECCCccEEEEeec---ccceeeeeCC
Confidence 65554 567788887665543 66788888888999999999999999998 8899999999
Q ss_pred CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
+|+. +..+-.+-..+..++||.|.+.|+.++.+. .|.+|++.+++...=.+ +|...+..+.|||||+.++
T Consensus 398 tGk~--lasfRGHv~~VYqvawsaDsRLlVS~SkDs-------TLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 398 TGKF--LASFRGHVAAVYQVAWSADSRLLVSGSKDS-------TLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred Ccch--hhhhhhccceeEEEEeccCccEEEEcCCCc-------eEEEEEeeeeeecccCC-CCCceEEEEEecCCCceee
Confidence 9985 555666667788999999999888887774 89999999877654333 4778889999999999987
Q ss_pred EEEecC
Q 004971 624 FTSDYG 629 (721)
Q Consensus 624 ~~~~~~ 629 (721)
....+.
T Consensus 468 sggkdk 473 (480)
T KOG0271|consen 468 SGGKDK 473 (480)
T ss_pred cCCCce
Confidence 655443
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=2e-19 Score=186.71 Aligned_cols=415 Identities=14% Similarity=0.097 Sum_probs=255.9
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCc-ceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG-LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
|| ||..++.+.+++ +...++.... ...++.. ........|||||+++|.+.. .
T Consensus 64 Sp--~g~lllavdE~g----------~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~~fav~~g-------------n 117 (893)
T KOG0291|consen 64 SP--DGTLLLAVDERG----------RALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGKFFAVGCG-------------N 117 (893)
T ss_pred CC--CceEEEEEcCCC----------cEEEEecccceeeEEEee-cCccceEEECCCCcEEEEEec-------------c
Confidence 99 998887776654 3333443322 2233323 333344489999999998642 2
Q ss_pred eEEEEEcCCCcee----EEE---eccCC-----cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC
Q 004971 250 DIYIFLTRDGTQR----VKI---VENGG-----WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317 (721)
Q Consensus 250 ~i~~~d~~~g~~~----~l~---~~~~~-----~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (721)
.|-+|.. .|+.+ ... ...+. ...|+.|.+++. ...+|-...|+.+...+.. .+..+.+
T Consensus 118 ~lqiw~~-P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~--~gsrD~s~rl~~v~~~k~~-------~~~~l~g 187 (893)
T KOG0291|consen 118 LLQIWHA-PGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLV--TGSRDLSARLFGVDGNKNL-------FTYALNG 187 (893)
T ss_pred eeEEEec-CcchhcccCcceEeeeecCCccceeEEEeccCCceEE--eccccceEEEEEecccccc-------ceEeccC
Confidence 2333333 22222 111 11111 458999999877 3445778888877666544 5666677
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC-----------------------ce-------EEe--ecc
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN-----------------------KF-------IEL--TRF 365 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg-----------------------~~-------~~l--~~~ 365 (721)
+...+....|.. |...++.++.+ +.|.+|..... +. ... ..+
T Consensus 188 Hkd~VvacfF~~-~~~~l~tvskd-----G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 188 HKDYVVACFFGA-NSLDLYTVSKD-----GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred CCcceEEEEecc-CcceEEEEecC-----ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 765566666777 77666655422 23555544311 00 000 000
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYV 443 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v 443 (721)
......+...+|.+.-..|++.-..+. ..+|...--.-...+.........++|+..|.+||+.. -++|-+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~-------f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGE-------FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCe-------eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 001122333344443333333222221 11221110000111111222334568888899999985 458888
Q ss_pred EECCCCceE--EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 444 VNSDGSNRR--QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 444 ~d~~~g~~~--~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
|+..+.... +-. ...+..+++||||+.++..+ ++++++||+....- +...++.+...+..+.|+.
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-------eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-------EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEecc-------CCCcEEEEeccCce-----EEEEeccCCCceEEEEEEe
Confidence 887654421 111 34677899999999999986 68999999987643 7778888888899999999
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
+|+.|+..+- +..+..||+..... .+.++... .....++..|.|..+..+..+ ...||+|++.+|+..
T Consensus 403 ~g~~llssSL---DGtVRAwDlkRYrN--fRTft~P~p~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 403 RGNVLLSSSL---DGTVRAWDLKRYRN--FRTFTSPEPIQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLL 471 (893)
T ss_pred cCCEEEEeec---CCeEEeeeecccce--eeeecCCCceeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeee
Confidence 9999999888 88999999987664 55555432 223457778889855444443 369999999999988
Q ss_pred EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC--CCeEEeccCCCCCCCceecCC
Q 004971 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG--SDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~lt~~~~~~~~~~~sp~ 676 (721)
.+.. +|.+.+..+.|+|+|..|+..+-+.+ |.+||.=. +++..|.- ...+.+.+|+|+
T Consensus 472 DiLs-GHEgPVs~l~f~~~~~~LaS~SWDkT-----------------VRiW~if~s~~~vEtl~i-~sdvl~vsfrPd 531 (893)
T KOG0291|consen 472 DILS-GHEGPVSGLSFSPDGSLLASGSWDKT-----------------VRIWDIFSSSGTVETLEI-RSDVLAVSFRPD 531 (893)
T ss_pred ehhc-CCCCcceeeEEccccCeEEeccccce-----------------EEEEEeeccCceeeeEee-ccceeEEEEcCC
Confidence 7765 49999999999999999998888775 77777633 34444443 334678899985
No 25
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.89 E-value=2.1e-20 Score=202.25 Aligned_cols=262 Identities=29% Similarity=0.467 Sum_probs=188.1
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
.+.+++|...........|+++|..+++.+.+... ......+.|||||++|+|.....+
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~---~~~~~~p~~Spdg~~la~~~~~~~------------------ 212 (417)
T TIGR02800 154 FSTRIAYVSKSGKSRRYELQVADYDGANPQTITRS---REPILSPAWSPDGQKLAYVSFESG------------------ 212 (417)
T ss_pred cCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecC---CCceecccCCCCCCEEEEEEcCCC------------------
Confidence 45567777655334456689998876655555421 223445566666666655432111
Q ss_pred CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971 411 LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVD 488 (721)
Q Consensus 411 ~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 488 (721)
...|+++++.+++.+.+. .+....+.|+|||+.|++... .++...
T Consensus 213 ---------------------------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~------~~~~~~ 259 (417)
T TIGR02800 213 ---------------------------KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLS------KDGNPD 259 (417)
T ss_pred ---------------------------CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEC------CCCCcc
Confidence 134677777776655554 344567899999999998763 345567
Q ss_pred EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD 568 (721)
||.++..+. ..++++........+.|+|||++|++.+.+.+..+||++|+.+++ ...++........+.||||
T Consensus 260 i~~~d~~~~----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~spd 332 (417)
T TIGR02800 260 IYVMDLDGK----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSPD 332 (417)
T ss_pred EEEEECCCC----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECCC
Confidence 788877664 667777766556678999999999999988777899999999887 5666655445568999999
Q ss_pred CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
|++|++..... +...|+++|+.++..+.++. ......+.|+|||++|++.+.+.+. ..|
T Consensus 333 g~~i~~~~~~~----~~~~i~~~d~~~~~~~~l~~---~~~~~~p~~spdg~~l~~~~~~~~~--------------~~l 391 (417)
T TIGR02800 333 GDLIAFVHREG----GGFNIAVMDLDGGGERVLTD---TGLDESPSFAPNGRMILYATTRGGR--------------GVL 391 (417)
T ss_pred CCEEEEEEccC----CceEEEEEeCCCCCeEEccC---CCCCCCceECCCCCEEEEEEeCCCc--------------EEE
Confidence 99999998763 56789999999877766653 2345678999999999999987764 269
Q ss_pred EEEEcCCCCeEEeccCCCCCCCceec
Q 004971 649 FKIKLDGSDLKRLTQNSFEDGTPAWG 674 (721)
Q Consensus 649 ~~~d~~~~~~~~lt~~~~~~~~~~~s 674 (721)
|+++.+++..+.++...+....|+||
T Consensus 392 ~~~~~~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 392 GLVSTDGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred EEEECCCceeeECCCCCCCcCCCCCC
Confidence 99998888888888766667788885
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=4.5e-18 Score=176.79 Aligned_cols=436 Identities=11% Similarity=0.048 Sum_probs=279.1
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec-CCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT-PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
+| ||..+++-.. .++..+++...+...+. .........+.||||..++.+..++
T Consensus 23 t~--dG~sviSPvG-----------Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g------------ 77 (893)
T KOG0291|consen 23 TK--DGNSVISPVG-----------NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERG------------ 77 (893)
T ss_pred CC--CCCEEEeccC-----------CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCC------------
Confidence 77 7777776321 17777777665554442 2333344558999998877754332
Q ss_pred eEEEEEcCCC-ceeEEEeccC-CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971 250 DIYIFLTRDG-TQRVKIVENG-GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327 (721)
Q Consensus 250 ~i~~~d~~~g-~~~~l~~~~~-~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (721)
...++++... ...+.....+ +...|||||+.++... ....+||.....-.. +.-.+...+...++--.+..+.|
T Consensus 78 ~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~---gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~W 153 (893)
T KOG0291|consen 78 RALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGC---GNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDW 153 (893)
T ss_pred cEEEEecccceeeEEEeecCccceEEECCCCcEEEEEe---cceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEe
Confidence 2333343221 1122222222 3669999999766322 345688865432211 11111222333344446778999
Q ss_pred ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec
Q 004971 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407 (721)
Q Consensus 328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 407 (721)
|. |.+.++.. +.+...+++.+...+.-....+.+|...+....|+.|...++..+.++. .-+|-.++
T Consensus 154 s~-DSr~l~~g-----srD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~-------l~~W~~~~ 220 (893)
T KOG0291|consen 154 SD-DSRLLVTG-----SRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA-------LFVWTCDL 220 (893)
T ss_pred cc-CCceEEec-----cccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce-------EEEEEecC
Confidence 99 99988773 3455688888876553233344566677777778888777777666554 22222221
Q ss_pred cCC---------------------CCc----cee---------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE
Q 004971 408 KSP---------------------LPD----ISL---------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR 452 (721)
Q Consensus 408 ~~~---------------------~~~----~~~---------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~ 452 (721)
..+ +.. .+. ........++++.-..|+... .+...++.+.+-...
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li 300 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI 300 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence 110 000 000 001122345666544455443 444557777666543
Q ss_pred EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971 453 QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529 (721)
Q Consensus 453 ~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s 529 (721)
+.. ...+..+.|+..|.+|++.+. .-+.+-||.+.... -+-....|-.....+++||||++|+...
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEeeccc-----eeeeccccccceeeEEECCCCcEEEecc
Confidence 332 467889999999999999983 45788899888754 2222333445677899999999999998
Q ss_pred eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 609 (721)
+ +..+.+||..+|-+ ....+++...++.+.|+.+|+.|+..+.++ .+..||+...+..+....+....
T Consensus 370 e---DgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDG-------tVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 370 E---DGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDG-------TVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred C---CCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCC-------eEEeeeecccceeeeecCCCcee
Confidence 8 88999999999887 888889998899999999999999999886 89999998776544443334445
Q ss_pred cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCceecCC--cCCccccc-c
Q 004971 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAWGPR--FIRPVDVE-E 685 (721)
Q Consensus 610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~sp~--~l~~~~~~-~ 685 (721)
...++..|.|..+...+.+. + +|++|+.++|++. .|..|.+.+...+|+|. .|+..+-| .
T Consensus 438 fscvavD~sGelV~AG~~d~-F---------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDS-F---------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeEEEEcCCCCEEEeeccce-E---------------EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 66788888898655444433 2 5999999999876 67778988898899985 67777766 4
Q ss_pred cc
Q 004971 686 VK 687 (721)
Q Consensus 686 ~~ 687 (721)
+|
T Consensus 502 VR 503 (893)
T KOG0291|consen 502 VR 503 (893)
T ss_pred EE
Confidence 54
No 27
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.86 E-value=1.9e-19 Score=188.61 Aligned_cols=243 Identities=28% Similarity=0.438 Sum_probs=191.1
Q ss_pred ceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEE----eC-CcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971 400 NQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFV----EF-PGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV 471 (721)
Q Consensus 400 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~----~~-~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l 471 (721)
.++++.+.++.. ..++........+.|+||++.++|. .. ..+++++++++....+. .+....+.|||||++|
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 456666654332 2223333344568999999999998 23 57999999988866555 6778899999999999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
+|+.. .++...||.+++.+. ...+|+...+....+.|||||++|+|.+++.|..+||+++.+++. ..
T Consensus 253 ~f~~~------rdg~~~iy~~dl~~~----~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~~ 319 (425)
T COG0823 253 AFSSS------RDGSPDIYLMDLDGK----NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---VT 319 (425)
T ss_pred EEEEC------CCCCccEEEEcCCCC----cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---ee
Confidence 99984 568999999999886 677788888788899999999999999999999999999999887 67
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+++........+.|||||++|+|..... +...|..+|+.++. .+.++ .......+.|+|+|+.|++.+...+
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~----g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~ 392 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSG----GQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQGG 392 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccC----CceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccCCC
Confidence 7776655555899999999999999542 44789999997776 44443 3455678999999999999888764
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
. +.++..++++...+.+....+....|+|+|.
T Consensus 393 ~--------------~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~~ 424 (425)
T COG0823 393 G--------------SVLSLVSLDGRVSRPLPLADGDVRVPAWSPV 424 (425)
T ss_pred C--------------ceEEEeeccceeEEEEeccCcceecccccCC
Confidence 3 3688888888777666655566788888874
No 28
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=4.3e-19 Score=190.95 Aligned_cols=257 Identities=19% Similarity=0.180 Sum_probs=182.7
Q ss_pred CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEE
Q 004971 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL 255 (721)
Q Consensus 176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d 255 (721)
+.+|+|+....+... ...||..|.++...+.|+.+......|.|||||++|+|++.++. ...||+++
T Consensus 168 ~~ria~v~~~~~~~~----~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~---------~~~i~i~d 234 (429)
T PRK01742 168 RTRIAYVVQKNGGSQ----PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENK---------KSQLVVHD 234 (429)
T ss_pred CCEEEEEEEEcCCCc----eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCC---------CcEEEEEe
Confidence 677999876543221 14899999988888888887777888999999999999875433 35788888
Q ss_pred cCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEE
Q 004971 256 TRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFI 335 (721)
Q Consensus 256 ~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~l 335 (721)
+.+|+.+++. . .......++||| ||++|
T Consensus 235 l~tg~~~~l~--------------------~-------------------------------~~g~~~~~~wSP-DG~~L 262 (429)
T PRK01742 235 LRSGARKVVA--------------------S-------------------------------FRGHNGAPAFSP-DGSRL 262 (429)
T ss_pred CCCCceEEEe--------------------c-------------------------------CCCccCceeECC-CCCEE
Confidence 8766543321 0 000112478999 99999
Q ss_pred EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce
Q 004971 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS 415 (721)
Q Consensus 336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 415 (721)
++.....+ ...||++|+.+++.+.++. +......+.|||||++|+|.+...+. .++|..+..+......
T Consensus 263 a~~~~~~g--~~~Iy~~d~~~~~~~~lt~---~~~~~~~~~wSpDG~~i~f~s~~~g~------~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 263 AFASSKDG--VLNIYVMGANGGTPSQLTS---GAGNNTEPSWSPDGQSILFTSDRSGS------PQVYRMSASGGGASLV 331 (429)
T ss_pred EEEEecCC--cEEEEEEECCCCCeEeecc---CCCCcCCEEECCCCCEEEEEECCCCC------ceEEEEECCCCCeEEe
Confidence 98764433 2458999998887766653 24456789999999999998754432 5688877655432221
Q ss_pred ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE-EEE
Q 004971 416 LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII-SIN 493 (721)
Q Consensus 416 ~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~-~~~ 493 (721)
......+.|||||++|++.....++++|+.+++.+.+. ......+.|+|||+.|++.+. ++...+| .++
T Consensus 332 --~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-------~g~~~~l~~~~ 402 (429)
T PRK01742 332 --GGRGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST-------QGLGKVLQLVS 402 (429)
T ss_pred --cCCCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc-------CCCceEEEEEE
Confidence 11124578999999999997788999999999877765 334467899999999999873 3344444 445
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccC
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPD 521 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpD 521 (721)
.++. ..+++..+.+....|+|||-
T Consensus 403 ~~G~----~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGR----FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCC----ceEEccCCCCCCCCcccCCC
Confidence 5554 67788776667788999984
No 29
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.82 E-value=1.9e-17 Score=179.20 Aligned_cols=260 Identities=26% Similarity=0.369 Sum_probs=177.6
Q ss_pred CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC
Q 004971 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357 (721)
Q Consensus 278 g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg 357 (721)
++++|......++...||..+. .+. ..++++.....+..+.||| ||++|+|.....+ ...|++||+.++
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~-~g~-------~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~--~~~i~v~d~~~g 224 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADY-DGA-------NPQTITRSREPILSPAWSP-DGQKLAYVSFESG--KPEIYVQDLATG 224 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcC-CCC-------CCEEeecCCCceecccCCC-CCCEEEEEEcCCC--CcEEEEEECCCC
Confidence 3566643332245667874443 333 5666776655567889999 9999999765432 356999999988
Q ss_pred ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe
Q 004971 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437 (721)
Q Consensus 358 ~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~ 437 (721)
+...+... ......+.|+|||+.|++.....+
T Consensus 225 ~~~~~~~~---~~~~~~~~~spDg~~l~~~~~~~~--------------------------------------------- 256 (417)
T TIGR02800 225 QREKVASF---PGMNGAPAFSPDGSKLAVSLSKDG--------------------------------------------- 256 (417)
T ss_pred CEEEeecC---CCCccceEECCCCCEEEEEECCCC---------------------------------------------
Confidence 75554422 223334667777766665421111
Q ss_pred CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971 438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 515 (721)
...||++++.++..+++. ......+.|+|||++|++.+. ..+...||.++..+. ...+++........
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~------~~g~~~iy~~d~~~~----~~~~l~~~~~~~~~ 326 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSD------RGGSPQIYMMDADGG----EVRRLTFRGGYNAS 326 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEEC------CCCCceEEEEECCCC----CEEEeecCCCCccC
Confidence 235777777777666665 233457899999999999874 234557888887764 56677766556678
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+.|||||++|++.....+..+|+++|+.++. ...++... ....+.|+|||++|++...+. +...+++++.++
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~-~~~~p~~spdg~~l~~~~~~~----~~~~l~~~~~~g 398 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---ERVLTDTG-LDESPSFAPNGRMILYATTRG----GRGVLGLVSTDG 398 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCC---eEEccCCC-CCCCceECCCCCEEEEEEeCC----CcEEEEEEECCC
Confidence 9999999999999876666799999999876 55565433 346789999999999999874 556899999877
Q ss_pred CceEEeeecCCCCCcCCeEEC
Q 004971 596 TGLRKLIQSGSAGRANHPYFS 616 (721)
Q Consensus 596 ~~~~~l~~~~~~~~~~~~~~S 616 (721)
+..+.++. ..+....+.||
T Consensus 399 ~~~~~~~~--~~g~~~~~~ws 417 (417)
T TIGR02800 399 RFRARLPL--GNGDVREPAWS 417 (417)
T ss_pred ceeeECCC--CCCCcCCCCCC
Confidence 66655543 34556667765
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=151.19 Aligned_cols=267 Identities=15% Similarity=0.163 Sum_probs=197.2
Q ss_pred CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec---cc
Q 004971 344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF---RF 419 (721)
Q Consensus 344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~ 419 (721)
+.+..|++|...+|...... ..+...+..+.++||++.|+.+.. ..+.++|+.+... .+..+ ..
T Consensus 17 ~YDhTIRfWqa~tG~C~rTi--qh~dsqVNrLeiTpdk~~LAaa~~----------qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTI--QHPDSQVNRLEITPDKKDLAAAGN----------QHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred cCcceeeeeehhcCeEEEEE--ecCccceeeEEEcCCcchhhhccC----------CeeEEEEccCCCCCceeEEeccCC
Confidence 46778999999999854433 334667788999999999987543 3456666655422 33222 23
Q ss_pred CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+..+.|.-||++++..+ ++.+.+||+..-..+++. ...+..+...|+...|+... .++.+++|++..+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-------qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-------QSGNIRVWDLGENS 157 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-------CCCcEEEEEccCCc
Confidence 345578999999998884 889999999886666655 56788899999999988764 57899999987664
Q ss_pred CCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----cceEECcCCCcCceeeEEccCCCE
Q 004971 497 VDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----YGLHRLTEGPWSDTMCNWSPDGEW 571 (721)
Q Consensus 497 ~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----~~~~~l~~~~~~~~~~~~SpDG~~ 571 (721)
....+. .....+..++..|||++|+...+ ...+|+|++-++.. ..+.++..+...+....+|||+++
T Consensus 158 -----c~~~liPe~~~~i~sl~v~~dgsml~a~nn---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 158 -----CTHELIPEDDTSIQSLTVMPDGSMLAAANN---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred -----cccccCCCCCcceeeEEEcCCCcEEEEecC---CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 333333 34467788999999999998887 67899999876532 112233345566678899999999
Q ss_pred EEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (721)
|+.++.+. .+++|+.++- +....+. ++...+...+||.||+||+..+.+.. ..+
T Consensus 230 lat~ssdk-------tv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~-----------------~rl 284 (311)
T KOG0315|consen 230 LATCSSDK-------TVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGEYLVTASSDHT-----------------ARL 284 (311)
T ss_pred EEeecCCc-------eEEEEecCCceeeEEEee-cCCceEEeeeeccCccEEEecCCCCc-----------------eee
Confidence 99999885 8999999887 4444443 36778899999999999999888853 667
Q ss_pred EEcCCCCeEEec
Q 004971 651 IKLDGSDLKRLT 662 (721)
Q Consensus 651 ~d~~~~~~~~lt 662 (721)
|++..++..+..
T Consensus 285 W~~~~~k~v~qy 296 (311)
T KOG0315|consen 285 WDLSAGKEVRQY 296 (311)
T ss_pred cccccCceeeec
Confidence 788777654443
No 31
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=169.71 Aligned_cols=271 Identities=15% Similarity=0.122 Sum_probs=214.9
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~~~ 398 (721)
.+....||+ |++.|+..+- .+.+.+|+..+.. .+..+.+|...+..+.|+|. +..|+.++.++.
T Consensus 177 Pis~~~fS~-ds~~laT~sw-----sG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt------ 242 (459)
T KOG0272|consen 177 PISGCSFSR-DSKHLATGSW-----SGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT------ 242 (459)
T ss_pred cceeeEeec-CCCeEEEeec-----CCceeEeecCCcc--eeEEEeccccceeeEEEccCCCccceeeeccCCc------
Confidence 445678999 9999988543 3458999998876 44455778888999999998 567888877777
Q ss_pred cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEE
Q 004971 399 NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~ 474 (721)
..+|-.+-..+...+......+..++|+|+|++|+.++ +..-.+||+.++....+. ...+..++|.|||..++..
T Consensus 243 -vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 243 -VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred -eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 45555544444445555555566789999999999985 777889999988754444 5578899999999988776
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
. .+.-.+||++.... .+-.|..+...+..++|||+|..|+..+. ++.+.+||+..... +-.+.
T Consensus 322 G-------lD~~~RvWDlRtgr-----~im~L~gH~k~I~~V~fsPNGy~lATgs~---Dnt~kVWDLR~r~~--ly~ip 384 (459)
T KOG0272|consen 322 G-------LDSLGRVWDLRTGR-----CIMFLAGHIKEILSVAFSPNGYHLATGSS---DNTCKVWDLRMRSE--LYTIP 384 (459)
T ss_pred C-------ccchhheeecccCc-----EEEEecccccceeeEeECCCceEEeecCC---CCcEEEeeeccccc--ceecc
Confidence 4 57788999998765 66777778888999999999999999887 88999999987654 67777
Q ss_pred CCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971 555 EGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631 (721)
Q Consensus 555 ~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 631 (721)
.+..-+..+.|+| -|.+|+.++.+. .+.+|...+..+.+... +|.+.+.++..|+||.+|+..+.+.+.
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~-------t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDN-------TVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCc-------ceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEeccCcee
Confidence 7877788999999 577777777775 89999988887776655 488999999999999999998887753
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.79 E-value=2.8e-17 Score=149.58 Aligned_cols=272 Identities=14% Similarity=0.083 Sum_probs=198.9
Q ss_pred CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971 288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367 (721)
Q Consensus 288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~ 367 (721)
.|-.+++|.+.... ..+.+......+..+.+.| |++.|+.+.+ ..|++||+.+++...+..++.
T Consensus 18 YDhTIRfWqa~tG~---------C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 18 YDHTIRFWQALTGI---------CSRTIQHPDSQVNRLEITP-DKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred CcceeeeeehhcCe---------EEEEEecCccceeeEEEcC-CcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence 37788888432221 3333433455678899999 9999988543 349999999998877777788
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVN 445 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d 445 (721)
+...+..+.|-.||++++..++++. .+| ++++.. ..+.......+..+..+|+...|+.. ..+.|++||
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt-------~kI--WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGT-------VKI--WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCce-------EEE--EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 8888999999999999998877776 344 444443 12233333455667889988888777 478999999
Q ss_pred CCCCce-EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-CCccceEEcccCCCCCcceEEcc
Q 004971 446 SDGSNR-RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-DGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 446 ~~~g~~-~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
+..... .++. ...+..+...|||+.|+.+. ..++..+|++-.... .....+.++..+.+......+||
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEec-------CCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 976542 2232 34677899999999999885 568899998765321 11122233444556677789999
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
|+|+|+..+. +..+++|+.++- .+....+..+...+...+||.||++|+.++.+. ...+|++..++..+
T Consensus 226 d~k~lat~ss---dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~-------~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 226 DVKYLATCSS---DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH-------TARLWDLSAGKEVR 294 (311)
T ss_pred CCcEEEeecC---CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCC-------ceeecccccCceee
Confidence 9999999987 789999999875 333566777777788999999999999999885 89999999887665
Q ss_pred ee
Q 004971 601 LI 602 (721)
Q Consensus 601 l~ 602 (721)
..
T Consensus 295 qy 296 (311)
T KOG0315|consen 295 QY 296 (311)
T ss_pred ec
Confidence 54
No 33
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=162.29 Aligned_cols=269 Identities=14% Similarity=0.078 Sum_probs=208.9
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC--CCEEEEEEecCCCCeeeE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN--NKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d--G~~la~~~~~~g~~~~~l 349 (721)
..||.|+.++++ ..-.|...+|.+..-. ....+.+|...+..+.|+| . +..|+.. +.++.+
T Consensus 181 ~~fS~ds~~laT--~swsG~~kvW~~~~~~---------~~~~l~gH~~~v~~~~fhP-~~~~~~lat~-----s~Dgtv 243 (459)
T KOG0272|consen 181 CSFSRDSKHLAT--GSWSGLVKVWSVPQCN---------LLQTLRGHTSRVGAAVFHP-VDSDLNLATA-----SADGTV 243 (459)
T ss_pred eEeecCCCeEEE--eecCCceeEeecCCcc---------eeEEEeccccceeeEEEcc-CCCccceeee-----ccCCce
Confidence 378899887774 3337889999654432 5667778877888999999 6 4566653 355669
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeC
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFS 427 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~S 427 (721)
.+|++.+.. .+..+++|...+..++|.|+|++|..++.+.. - .++|+.++...+.+ .......++|.
T Consensus 244 klw~~~~e~--~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t-------W--RlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 244 KLWKLSQET--PLQDLEGHLARVSRVAFHPSGKFLGTASFDST-------W--RLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred eeeccCCCc--chhhhhcchhhheeeeecCCCceeeecccccc-------h--hhcccccchhhHhhcccccccceeEec
Confidence 999987654 67777888888999999999999999888777 2 34455554332222 23445678999
Q ss_pred cCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 428 PKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 428 pDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
|||+.++..+ +.--.+||+.+|....+. ...+..+.|||+|-.||..+ .++..+||++.... .+
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-------~Dnt~kVWDLR~r~-----~l 380 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-------SDNTCKVWDLRMRS-----EL 380 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-------CCCcEEEeeecccc-----cc
Confidence 9998777665 555689999999876655 45788999999999999886 68999999998765 56
Q ss_pred EEcccCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCC
Q 004971 504 RRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 582 (721)
..+..+...+..+.|+| -|++|+..+. +..+.+|...+..+ ++.|..+...+..+..||||+.|+.++.+.
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~Tasy---D~t~kiWs~~~~~~--~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR--- 452 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASY---DNTVKIWSTRTWSP--LKSLAGHEGKVISLDISPDSQAIATSSFDR--- 452 (459)
T ss_pred eecccccchhhheEecccCCeEEEEccc---CcceeeecCCCccc--chhhcCCccceEEEEeccCCceEEEeccCc---
Confidence 77777888889999999 6777777776 78899999998886 888888888899999999999999998874
Q ss_pred CCceeEEEEe
Q 004971 583 SGSFEMYLIH 592 (721)
Q Consensus 583 ~~~~~i~~~d 592 (721)
.+.+|.
T Consensus 453 ----T~KLW~ 458 (459)
T KOG0272|consen 453 ----TIKLWR 458 (459)
T ss_pred ----eeeecc
Confidence 676664
No 34
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.78 E-value=5.2e-16 Score=162.55 Aligned_cols=227 Identities=22% Similarity=0.378 Sum_probs=147.6
Q ss_pred cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC
Q 004971 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS 449 (721)
Q Consensus 373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g 449 (721)
..+.|||||++|+|...+.... ..+.+........ .+... .+-.-|... ..-.|++++++++
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v-----~~~~~~~~~~~~~~yp~~~~~-------~YPk~G~~n---p~v~l~v~~~~~~ 168 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREV-----PEYPLPDYSPPDSQYPEVESI-------RYPKAGDPN---PRVSLFVVDLASG 168 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS------EEEEEEESSSTESS-EEEEE-------E--BTTS------EEEEEEEESSST
T ss_pred cceEECCCCCEEEEEEECCcCC-----ceEEeeccCCccccCCccccc-------ccCCCCCcC---CceEEEEEECCCC
Confidence 4678999999999998877642 2233333222211 11100 000001111 1235899999988
Q ss_pred ceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-c--cCC--CCCcce
Q 004971 450 NRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-T--TNG--KNNAFP 516 (721)
Q Consensus 450 ~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~--~~~--~~~~~~ 516 (721)
+...+. ...+..+.|++|++.|++.... .......++.++...+ ..+.+ . ... .....+
T Consensus 169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n----R~q~~~~l~~~d~~tg----~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN----RDQNRLDLVLCDASTG----ETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE----TTSTEEEEEEEEECTT----TCEEEEEEESSSSSSSSSEE
T ss_pred cEEEeeeccccCCCccCcccceecCCCcEEEEEEcc----cCCCEEEEEEEECCCC----ceeEEEEecCCcceeeeccc
Confidence 864443 2345689999999966665421 2456777788877553 22222 1 111 122345
Q ss_pred EEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee-eEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 517 SVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 517 ~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
.|. +++..+++.+.++|..+||+++.+++. ++.|+.+.+.+.. +.|+++++.|+|.+.... ....+||..+++
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~--p~~r~lY~v~~~ 315 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN--PGERHLYRVSLD 315 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTSSEEEEEESSGG--TTSBEEEEEETT
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCCCEEEEEecCCC--CCceEEEEEEeC
Confidence 665 999999999999999999999999888 7899999888744 789999999999998743 367899999999
Q ss_pred -CCceEEeeecCCCCCcC-CeEECCCCCEEEEEEecCC
Q 004971 595 -GTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 595 -~~~~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~ 630 (721)
+++.++|+.. .... .+.|||||++++......+
T Consensus 316 ~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 316 SGGEPKCLTCE---DGDHYSASFSPDGKYYVDTYSGPD 350 (353)
T ss_dssp ETTEEEESSTT---SSTTEEEEE-TTSSEEEEEEESSS
T ss_pred CCCCeEeccCC---CCCceEEEECCCCCEEEEEEcCCC
Confidence 8888888753 3334 8999999999988776543
No 35
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=5.6e-17 Score=170.13 Aligned_cols=248 Identities=27% Similarity=0.422 Sum_probs=185.3
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCC
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDG 421 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 421 (721)
+.....+++.|-+.-....+... ......+.|+|+++.++|........ .++++.++..+.. .+.......
T Consensus 169 ~~~~~~l~~~D~dg~~~~~l~~~---~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~~~~i~~~~g~~ 240 (425)
T COG0823 169 GPLPYELALGDYDGYNQQKLTDS---GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGKRPVILNFNGNN 240 (425)
T ss_pred CCCCceEEEEccCCcceeEeccc---CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCccceeeccCCcc
Confidence 33445688888763333344322 44466799999999999987666532 4688888876643 333345556
Q ss_pred CCceeCcCCCEEEEE----eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 422 SFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 422 ~~~~~SpDG~~la~~----~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
..++|||||++|+|. +..+||++|+.++...+|+ .+....+.|||||++|+|+++ ..+...||.++.+
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd------r~G~p~I~~~~~~ 314 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD------RGGRPQIYLYDLE 314 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC------CCCCcceEEECCC
Confidence 779999999999999 3568999999999987777 556669999999999999985 4577799999998
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
+. ..++++........+.|||||++|+|.+...+...|.+.|+.++.. .+.++ .......+.|+|+|+.|.|.
T Consensus 315 g~----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 315 GS----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CC----ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEcc-ccccCCCCCcCCCCceEEEe
Confidence 86 7788888776667999999999999999544557899999987763 33444 44455789999999999999
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
+... +...++..+.++...+.+.. ..+....++|+|
T Consensus 388 s~~~----~~~~l~~~s~~g~~~~~~~~--~~~~~~~p~w~~ 423 (425)
T COG0823 388 SGQG----GGSVLSLVSLDGRVSRPLPL--ADGDVRVPAWSP 423 (425)
T ss_pred ccCC----CCceEEEeeccceeEEEEec--cCcceecccccC
Confidence 9874 56788888877765554432 335566677765
No 36
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=1.5e-15 Score=156.58 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=177.6
Q ss_pred eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-ecccCCCCc
Q 004971 346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-LFRFDGSFP 424 (721)
Q Consensus 346 ~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 424 (721)
+..|++||+.+++...... . ......++|+|||+.++...... ..+++++..++..... ........+
T Consensus 10 d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~ 78 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGEVIGTLPSGPDPELF 78 (300)
T ss_pred CCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCcEEEeccCCCCccEE
Confidence 4469999999887544332 1 23356789999999876654322 2466666655421111 111223457
Q ss_pred eeCcCCCEEEEEe--CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 425 SFSPKGDRIAFVE--FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 425 ~~SpDG~~la~~~--~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
.|+|||+.+++.. ++.|++||+.+++... +. ...+..+.|+|||+.+++... ....+.+| +..+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~~~~~--d~~~~--- 147 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSE------TTNMAHFI--DTKTY--- 147 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEec------CCCeEEEE--eCCCC---
Confidence 8999999887663 6789999998765432 22 234678999999999998762 11223333 33332
Q ss_pred cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------CcCceeeEEccCCCEEE
Q 004971 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMCNWSPDGEWIA 573 (721)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~~~SpDG~~l~ 573 (721)
.....+. .......++|+|||++|++.+.. ...|++||+.+++. +..+... ......++|+|||+.++
T Consensus 148 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 148 EIVDNVL-VDQRPRFAEFTADGKELWVSSEI--GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred eEEEEEE-cCCCccEEEECCCCCEEEEEcCC--CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEE
Confidence 1122222 22345668999999999876543 45799999998864 3333211 11224578999999877
Q ss_pred EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 653 (721)
+..... ..|.+||+.+++...... ....+..+.|+|||++|+......+ .|.+||+
T Consensus 223 ~~~~~~------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~----------------~i~v~d~ 278 (300)
T TIGR03866 223 VALGPA------NRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSN----------------DVSVIDV 278 (300)
T ss_pred EEcCCC------CeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCC----------------eEEEEEC
Confidence 655432 269999998887665433 3346778999999999887654443 4999999
Q ss_pred CCCCe-EEeccCCCCCCCceecC
Q 004971 654 DGSDL-KRLTQNSFEDGTPAWGP 675 (721)
Q Consensus 654 ~~~~~-~~lt~~~~~~~~~~~sp 675 (721)
++++. +++. .+...+..+++|
T Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 279 AALKVIKSIK-VGRLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEE-cccccceeEeCC
Confidence 99885 4554 344556666554
No 37
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.76 E-value=4.8e-16 Score=144.90 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=202.4
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
+.+.+|...+..+.|++ |.++|+.++ .++.|.+||.-|...... ..-+...+...+|+|.|+.++....++.
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaS-----qDGklIvWDs~TtnK~ha--ipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSAS-----QDGKLIVWDSFTTNKVHA--IPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeec-----cCCeEEEEEcccccceeE--EecCceeEEEEEECCCCCeEEecCcCce
Confidence 44566777888999999 999998865 445699999987653222 2334677889999999999987655554
Q ss_pred CCCCCCcceeEEEeccCCC--Ccc-eecccCC---CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeE
Q 004971 393 STREDGNNQLLLENIKSPL--PDI-SLFRFDG---SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTV 463 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~---~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~ 463 (721)
-.+|-...+... ..+ ..+.... ....|-+|++.|--.++....+||+++|+..+.+ .+.+..+.
T Consensus 121 -------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 121 -------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred -------eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 334433322111 111 1111111 2246667776555457889999999999877776 56788999
Q ss_pred EcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 464 WDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 464 ~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
++| +++.++..+ -+....||++.... ..+.+..+...+..+.|.|+|..++..++ +....+||+
T Consensus 194 l~p~~~ntFvSg~-------cD~~aklWD~R~~~-----c~qtF~ghesDINsv~ffP~G~afatGSD---D~tcRlyDl 258 (343)
T KOG0286|consen 194 LSPSDGNTFVSGG-------CDKSAKLWDVRSGQ-----CVQTFEGHESDINSVRFFPSGDAFATGSD---DATCRLYDL 258 (343)
T ss_pred cCCCCCCeEEecc-------cccceeeeeccCcc-----eeEeecccccccceEEEccCCCeeeecCC---CceeEEEee
Confidence 999 888877664 57889999998754 77788888888899999999999999887 788999999
Q ss_pred CCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 543 EGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 543 ~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
..... +..... ....+++++||..|+.|+.+..+. .+.+||.-.++..-+.. +|...+..+..+|||.
T Consensus 259 RaD~~--~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-------~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 259 RADQE--LAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-------TCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGM 328 (343)
T ss_pred cCCcE--EeeeccCcccCCceeEEEcccccEEEeeecCC-------ceeEeeccccceEEEee-ccCCeeEEEEECCCCc
Confidence 87663 332222 234568899999999777766664 89999987776555544 4889999999999999
Q ss_pred EEEEEEecCC
Q 004971 621 SIVFTSDYGG 630 (721)
Q Consensus 621 ~l~~~~~~~~ 630 (721)
-|+..+-+..
T Consensus 329 av~TgSWDs~ 338 (343)
T KOG0286|consen 329 AVATGSWDST 338 (343)
T ss_pred EEEecchhHh
Confidence 8887776653
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.75 E-value=5.1e-16 Score=157.82 Aligned_cols=271 Identities=17% Similarity=0.174 Sum_probs=192.2
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
.+...+..+.|+| ++++|++.. .+..+.+|++.+++.... ...+...+..+.|+|+++.|++...++.
T Consensus 7 ~h~~~i~~~~~~~-~~~~l~~~~-----~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~---- 74 (289)
T cd00200 7 GHTGGVTCVAFSP-DGKLLATGS-----GDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSDKT---- 74 (289)
T ss_pred ccCCCEEEEEEcC-CCCEEEEee-----cCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCCCe----
Confidence 4445677889999 999988854 245699999988763222 2334455568899999988888765443
Q ss_pred CCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe
Q 004971 397 DGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA 470 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~ 470 (721)
+.++++.... ..+.........+.|+++++.++... ++.+.+|++..++..... ...+..+.|+|+++.
T Consensus 75 -----i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 75 -----IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred -----EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence 5666665431 11221222345578999987777776 899999999866544333 345789999999888
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
++... .++.+.+|++.... ....+..+...+..+.|+|+++.|++.+. +..|++||..+++. +
T Consensus 150 l~~~~-------~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~--~ 212 (289)
T cd00200 150 VASSS-------QDGTIKLWDLRTGK-----CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKC--L 212 (289)
T ss_pred EEEEc-------CCCcEEEEEccccc-----cceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCce--e
Confidence 77764 36788888876432 34445555557788999999999998887 67899999987764 4
Q ss_pred EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..+..+...+..+.|+|++..++....++ .|++|++.+++...... .+...+..+.|+|++++|+..+.++
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDG-------TIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCC-------cEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCC
Confidence 44434555678899999977776666453 79999998776555544 2566788999999999988777655
No 39
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.74 E-value=4.1e-15 Score=148.92 Aligned_cols=305 Identities=21% Similarity=0.322 Sum_probs=168.9
Q ss_pred ceEEeCCCC-----CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971 311 SIQRVTPPG-----LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385 (721)
Q Consensus 311 ~~~~~~~~~-----~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~ 385 (721)
+..+++... ....+.+|.+ ||++|+|.+...+ ...++++|+++++.++|+... .....+..++|+++.|+
T Consensus 22 ~VtrLT~~~~~~h~~YF~~~~ft~-dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 22 RVTRLTPPDGHSHRLYFYQNCFTD-DGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALY 96 (386)
T ss_dssp EEEE-S-TTS-EE---TTS--B-T-TS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEE
T ss_pred eEEEecCCCCcccceeecCCCcCC-CCCEEEEEeccCC--CcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEE
Confidence 566666553 3456778999 9999999877654 456999999999999998643 23344688999999999
Q ss_pred EEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCC-CCcee--CcCCCEEEEE-----------------------eC
Q 004971 386 YHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDG-SFPSF--SPKGDRIAFV-----------------------EF 438 (721)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~--SpDG~~la~~-----------------------~~ 438 (721)
|.... ..++..++.+.... +...+..- ....| ..|++.++.+ ..
T Consensus 97 Yv~~~---------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~ 167 (386)
T PF14583_consen 97 YVKNG---------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH 167 (386)
T ss_dssp EEETT---------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---
T ss_pred EEECC---------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC
Confidence 86532 24677777766432 22111111 11234 5677777665 12
Q ss_pred CcEEEEECCCCceEEEe--ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCC
Q 004971 439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNN 513 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~ 513 (721)
..|+.+|+.+|+.+.+. ......+.+||. ...|+|+-.++. +.-..+||.++.+++ ..+.+.... ...
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw---~~Vd~RiW~i~~dg~----~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPW---DLVDQRIWTINTDGS----NVKKVHRRMEGESV 240 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-T---TTSS-SEEEEETTS-------EESS---TTEEE
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCc---ceeceEEEEEEcCCC----cceeeecCCCCccc
Confidence 35899999999988887 456689999995 556667665542 222457999999886 666665543 345
Q ss_pred cceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC---------C
Q 004971 514 AFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP---------G 582 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~---------~ 582 (721)
.+--|+|||+.|.|.+...+ ..-|+-+|+++++. +.+...+. ..++.-|+||+.++--..+... .
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~---~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER---RRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E---EEEEEE-S-EEEEEE-TTSSEEEEEE---------------
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc---eEEEeCCc-eeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 56789999999999876443 44688889998873 44444433 3577889999966543332110 1
Q ss_pred CCceeEEEEecCCCceEEeeecCC-------C--CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971 583 SGSFEMYLIHPNGTGLRKLIQSGS-------A--GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653 (721)
Q Consensus 583 ~~~~~i~~~d~~~~~~~~l~~~~~-------~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 653 (721)
....-||++++..+....+..... . ..-.+|.|||||++|+|.++..+.+ .||++++
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~--------------~vY~v~i 382 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP--------------AVYLVEI 382 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS---------------EEEEEE-
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc--------------cEEEEeC
Confidence 123478889998887766654210 0 1234689999999999999998754 7999886
Q ss_pred C
Q 004971 654 D 654 (721)
Q Consensus 654 ~ 654 (721)
.
T Consensus 383 ~ 383 (386)
T PF14583_consen 383 P 383 (386)
T ss_dssp -
T ss_pred c
Confidence 4
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.72 E-value=1.7e-15 Score=149.94 Aligned_cols=266 Identities=13% Similarity=0.127 Sum_probs=198.8
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.++..++|+- +|..|++.. .++.+++|+...+. +..+..|.+.+..+.|+.+|.+|+....++.
T Consensus 236 kdVT~L~Wn~-~G~~LatG~-----~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~t------- 299 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGS-----EDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGT------- 299 (524)
T ss_pred CCcceEEecC-CCCeEEEee-----cCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCcc-------
Confidence 4577899999 999999954 55679999987553 3344556788889999999999998776665
Q ss_pred ceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEE
Q 004971 400 NQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 400 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~ 474 (721)
+.+++...+. ..+.......-.+.|-.+........++.|+++.+....+..-. .+.+..+.|.|.|..|+.+
T Consensus 300 --tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 300 --TILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred --EEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 3444443331 12222222223356655443333335778999988766654333 6778899999999999998
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC---------EEEEEEeeCCceeEEEEECCCC
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK---------WIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~---------~l~~~s~~~g~~~l~~~d~~~g 545 (721)
+ ++.+++||.+.... ....|..+...++...|||+|. .|+..+. +..+.+||+..|
T Consensus 378 S-------dD~TlkiWs~~~~~-----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~---dstV~lwdv~~g 442 (524)
T KOG0273|consen 378 S-------DDGTLKIWSMGQSN-----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF---DSTVKLWDVESG 442 (524)
T ss_pred c-------CCCeeEeeecCCCc-----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec---CCeEEEEEccCC
Confidence 7 68999999987654 4566777777788889999765 4565555 778999999999
Q ss_pred cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
.+ +..++.+...+..++|||||++||+++.++ .|.+|+..+++..+-.. ..+.+..+.|+-+|.+|...
T Consensus 443 v~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg-------~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 443 VP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDG-------CVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred ce--eEeeccCCCceEEEEecCCCcEEEecCCCC-------eeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 86 788888888899999999999999999886 89999999988777654 45667899999999998776
Q ss_pred EecC
Q 004971 626 SDYG 629 (721)
Q Consensus 626 ~~~~ 629 (721)
..++
T Consensus 512 ~sd~ 515 (524)
T KOG0273|consen 512 ASDG 515 (524)
T ss_pred ecCC
Confidence 6655
No 41
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.72 E-value=7.4e-15 Score=147.14 Aligned_cols=348 Identities=16% Similarity=0.233 Sum_probs=181.2
Q ss_pred cceeEEeccCCCCCCCCceeeecccee-----eeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeec
Q 004971 42 YAFDIYTLPISDRPTTANEIKITDGES-----VNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERN 116 (721)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (721)
.+..-|.-+..+ .+.+|||.... +-++..|.+||+ +|+|.+.++
T Consensus 9 ~~~~~~~D~~TG----~~VtrLT~~~~~~h~~YF~~~~ft~dG~---------------------------kllF~s~~d 57 (386)
T PF14583_consen 9 LEFKTWIDPDTG----HRVTRLTPPDGHSHRLYFYQNCFTDDGR---------------------------KLLFASDFD 57 (386)
T ss_dssp --EEEEE-TTT------EEEE-S-TTS-EE---TTS--B-TTS----------------------------EEEEEE-TT
T ss_pred cceeEEeCCCCC----ceEEEecCCCCcccceeecCCCcCCCCC---------------------------EEEEEeccC
Confidence 345678877766 88899997655 456888999999 999999999
Q ss_pred CCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccc
Q 004971 117 GTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWA 196 (721)
Q Consensus 117 g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~ 196 (721)
|..++|.+++.+++ .+| ||.+.... .... .+ +| +++.++|+.+..
T Consensus 58 g~~nly~lDL~t~~----i~Q--LTdg~g~~-~~g~-----------~~-----s~--~~~~~~Yv~~~~---------- 102 (386)
T PF14583_consen 58 GNRNLYLLDLATGE----ITQ--LTDGPGDN-TFGG-----------FL-----SP--DDRALYYVKNGR---------- 102 (386)
T ss_dssp SS-EEEEEETTT-E----EEE-----SS-B--TTT------------EE------T--TSSEEEEEETTT----------
T ss_pred CCcceEEEEcccCE----EEE--CccCCCCC-ccce-----------EE-----ec--CCCeEEEEECCC----------
Confidence 99999999999988 777 98322101 1101 34 88 899998886542
Q ss_pred eEEEEeCCCcceEeecCCCC--Ccccccc--CCCCCEEEEEecCCCCCC------c----ccceeeeeEEEEEcCCCcee
Q 004971 197 AVYSTELKTGLTRRLTPYGV--ADFSPAV--SPSGKYTAVASYGNKGWD------G----EVEMLSTDIYIFLTRDGTQR 262 (721)
Q Consensus 197 ~l~~v~~~~g~~~~lt~~~~--~~~~p~~--SPDG~~la~~~~~~~~w~------~----~~~~~~~~i~~~d~~~g~~~ 262 (721)
.|+.+++++.+.+.+...+. ..+. .| ..|++.++........|+ + +.-.....|+.+++.+|+.+
T Consensus 103 ~l~~vdL~T~e~~~vy~~p~~~~g~g-t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 103 SLRRVDLDTLEERVVYEVPDDWKGYG-TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEEEEETTT--EEEEEE--TTEEEEE-EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred eEEEEECCcCcEEEEEECCccccccc-ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 89999999998877643322 2222 33 458888876543222232 1 11234578999999999998
Q ss_pred EEEeccC--CcceeccC--CeEEEEeccCCCCc-EEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEE
Q 004971 263 VKIVENG--GWPCWVDE--STLFFHRKSEEDDW-ISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFI 335 (721)
Q Consensus 263 ~l~~~~~--~~~~ws~d--g~l~~~~~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~l 335 (721)
.+..... +++.|||. +.+.|......+.. ..||.+...++ ..+.+... ...+..--|+| ||..|
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~~~v~~~~~~e~~gHEfw~~-DG~~i 252 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NVKKVHRRMEGESVGHEFWVP-DGSTI 252 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS---TTEEEEEEEE-T-TSS-E
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------cceeeecCCCCcccccccccC-CCCEE
Confidence 8876554 57889975 23555433333333 37886654443 34444333 33455677999 99999
Q ss_pred EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce
Q 004971 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS 415 (721)
Q Consensus 336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 415 (721)
.|.....++....|.-+|+++++.+.+... .....+..++||+.++- +..+.. ..+.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vG--DG~d~p-------~~v~---------- 309 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVG--DGGDAP-------VDVA---------- 309 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEE--EE-------------------------
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEe--cCCCCC-------cccc----------
Confidence 998877777778899999999987665432 13446777888876542 222100 0000
Q ss_pred ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 416 LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 416 ~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
. ++|..+ -.+.-|+++++..+....+.... .
T Consensus 310 ----------~-~~~~~~--~~~p~i~~~~~~~~~~~~l~~h~---------~--------------------------- 340 (386)
T PF14583_consen 310 ----------D-AGGYKI--ENDPWIYLFDVEAGRFRKLARHD---------T--------------------------- 340 (386)
T ss_dssp ------------------------EEEEEETTTTEEEEEEE---------------------------------------
T ss_pred ----------c-ccccee--cCCcEEEEeccccCceeeeeecc---------C---------------------------
Confidence 0 111111 12334677777766554443110 0
Q ss_pred CCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 496 DVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
....+..+. ....+|.|||||++|+|.++..|...||++++.
T Consensus 341 ------sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 341 ------SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp ----------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred ------cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 000111111 123568999999999999999999999999875
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=2.3e-14 Score=147.62 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=164.4
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....++|+| ||+.++.... .+..|++||+.+++...... . ......+.|+|+|+.++...... .
T Consensus 32 ~~~~l~~~~-dg~~l~~~~~----~~~~v~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~~l~~~~~~~--------~ 95 (300)
T TIGR03866 32 RPRGITLSK-DGKLLYVCAS----DSDTIQVIDLATGEVIGTLP--S-GPDPELFALHPNGKILYIANEDD--------N 95 (300)
T ss_pred CCCceEECC-CCCEEEEEEC----CCCeEEEEECCCCcEEEecc--C-CCCccEEEECCCCCEEEEEcCCC--------C
Confidence 356789999 9997765432 23459999999887533221 1 22245678999999887654322 2
Q ss_pred eeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEeC--CcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEE
Q 004971 401 QLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVEF--PGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~~--~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~ 474 (721)
.+.++++.... .+... ......++|+|||+.+++... ..++.+|..+++... +. ......+.|+|||++|++.
T Consensus 96 ~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 96 LVTVIDIETRK-VLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred eEEEEECCCCe-EEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEE
Confidence 46677765432 11111 122455799999999888753 346778988776433 22 3455678999999999876
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
+. .++.+.+|++.... ....+... ......++|+|||+++++.... ...|.+||+.+++.
T Consensus 175 ~~------~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 175 SE------IGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEV 241 (300)
T ss_pred cC------CCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence 52 35677887775432 22333211 1123457899999987765432 45799999988774
Q ss_pred cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
...+..+ ..+..++|+|||++|+.+.... ..|.+||+.+++...... .....+.++++|
T Consensus 242 --~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~ 300 (300)
T TIGR03866 242 --LDYLLVG-QRVWQLAFTPDEKYLLTTNGVS------NDVSVIDVAALKVIKSIK--VGRLPWGVVVRP 300 (300)
T ss_pred --EEEEEeC-CCcceEEECCCCCEEEEEcCCC------CeEEEEECCCCcEEEEEE--cccccceeEeCC
Confidence 3333222 3457899999999988765422 279999999988655444 234556677665
No 43
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-15 Score=137.81 Aligned_cols=276 Identities=15% Similarity=0.108 Sum_probs=188.7
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+...+..++..+ .+..+++...+ +..+.+|++..... ..+..+.+|...+..+..|+||.+.+..+.++.
T Consensus 13 gh~d~Vt~la~~~-~~~~~l~sasr----Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~- 86 (315)
T KOG0279|consen 13 GHTDWVTALAIKI-KNSDILVSASR----DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT- 86 (315)
T ss_pred CCCceEEEEEeec-CCCceEEEccc----ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce-
Confidence 3444556666667 66666664433 34578888765422 124445566777889999999998887776665
Q ss_pred CCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcC
Q 004971 394 TREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDP 466 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~sp 466 (721)
+.++|+.++.. ++......+-.+++|+|.++|+..+ +..|.+|+..++-...+. .+.+..+.|+|
T Consensus 87 --------lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 87 --------LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred --------EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 56777776532 2222334445679999999998884 788999999887766665 24678999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
.....++++. ..++.+++|+++.-. ....+..+.+....+++||||..++.... +..+++||++.++
T Consensus 159 ~~~~p~Ivs~-----s~DktvKvWnl~~~~-----l~~~~~gh~~~v~t~~vSpDGslcasGgk---dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 159 NESNPIIVSA-----SWDKTVKVWNLRNCQ-----LRTTFIGHSGYVNTVTVSPDGSLCASGGK---DGEAMLWDLNEGK 225 (315)
T ss_pred CCCCcEEEEc-----cCCceEEEEccCCcc-----hhhccccccccEEEEEECCCCCEEecCCC---CceEEEEEccCCc
Confidence 9644444332 368999999987532 23344455678888999999998887655 7899999999887
Q ss_pred ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cC--C-----CCCcCCeEECCC
Q 004971 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SG--S-----AGRANHPYFSPD 618 (721)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~--~-----~~~~~~~~~SpD 618 (721)
. +..+ .+...+..++|+|+-=+|+.+... .|.+||++++....-.. .. . ...-...+||+|
T Consensus 226 ~--lysl-~a~~~v~sl~fspnrywL~~at~~--------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d 294 (315)
T KOG0279|consen 226 N--LYSL-EAFDIVNSLCFSPNRYWLCAATAT--------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD 294 (315)
T ss_pred e--eEec-cCCCeEeeEEecCCceeEeeccCC--------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence 4 3333 344567899999997777666554 69999999885432211 10 1 111235799999
Q ss_pred CCEEEEEEecCC
Q 004971 619 GKSIVFTSDYGG 630 (721)
Q Consensus 619 G~~l~~~~~~~~ 630 (721)
|..|+....++.
T Consensus 295 G~tLf~g~td~~ 306 (315)
T KOG0279|consen 295 GQTLFAGYTDNV 306 (315)
T ss_pred CcEEEeeecCCc
Confidence 999987666554
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.70 E-value=4.9e-15 Score=146.75 Aligned_cols=302 Identities=15% Similarity=0.108 Sum_probs=214.2
Q ss_pred CCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCC--CceEE-e-----e----cccCCCCcccCcEEcCCCCE
Q 004971 317 PPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVK--NKFIE-L-----T----RFVSPKTHHLNPFISPDSSR 383 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~t--g~~~~-l-----~----~~~~~~~~~~~~~~Spdg~~ 383 (721)
.+.-.+...+|.| -.+ .+++ ++.+...++|++.. ..... + . ........+..++|+.+|..
T Consensus 176 ~~~~~V~~~~WnP-~~~~llas-----g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 176 RHESEVFICAWNP-LRDGLLAS-----GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred cCCCceEEEecCc-hhhhhhhc-----cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 3444556677888 444 4444 23344467777763 11101 0 0 00111345788999999999
Q ss_pred EEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecC
Q 004971 384 VGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKN 458 (721)
Q Consensus 384 l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~ 458 (721)
|++...++. +.+++..+. ...+.........+.|+.+|.+|+..+ ++.+.+||..+|+..+.+ ...
T Consensus 250 LatG~~~G~---------~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 250 LATGSEDGE---------ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred EEEeecCcE---------EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 999888776 334444443 223334455566789999999999885 889999999999876665 333
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
..++.|-.+.++... ..++.+++|.++.+. ....+..|.+.+..+.|.|.|+.|+..+. +..|.
T Consensus 321 ~lDVdW~~~~~F~ts--------~td~~i~V~kv~~~~-----P~~t~~GH~g~V~alk~n~tg~LLaS~Sd---D~Tlk 384 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATS--------STDGCIHVCKVGEDR-----PVKTFIGHHGEVNALKWNPTGSLLASCSD---DGTLK 384 (524)
T ss_pred ccceEEecCceEeec--------CCCceEEEEEecCCC-----cceeeecccCceEEEEECCCCceEEEecC---CCeeE
Confidence 356888766544332 246789999998776 56677778889999999999999999888 78999
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCC---------EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE---------WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 609 (721)
+|+...+.. ...+..+...+..+.|||+|. .|+.++.+. .|.+||+..+.+...+. .|...
T Consensus 385 iWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------tV~lwdv~~gv~i~~f~-kH~~p 454 (524)
T KOG0273|consen 385 IWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------TVKLWDVESGVPIHTLM-KHQEP 454 (524)
T ss_pred eeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------eEEEEEccCCceeEeec-cCCCc
Confidence 998654443 566767766678889999764 566666553 89999999987665543 27788
Q ss_pred cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
+.+++|||||++|++.+.++. |.+|+.+++++.+-....+.+...+|+..
T Consensus 455 VysvafS~~g~ylAsGs~dg~-----------------V~iws~~~~~l~~s~~~~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGC-----------------VHIWSTKTGKLVKSYQGTGGIFELCWNAA 504 (524)
T ss_pred eEEEEecCCCcEEEecCCCCe-----------------eEeccccchheeEeecCCCeEEEEEEcCC
Confidence 999999999999998777764 88999999988766665666788888764
No 45
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=2e-15 Score=142.82 Aligned_cols=351 Identities=16% Similarity=0.162 Sum_probs=211.8
Q ss_pred cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe--ccCCcceeccCCe-EEEEeccCCCCcEEEEEE
Q 004971 221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV--ENGGWPCWVDEST-LFFHRKSEEDDWISVYKV 297 (721)
Q Consensus 221 p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~--~~~~~~~ws~dg~-l~~~~~~~~~g~~~l~~~ 297 (721)
..|||+|++||..+ ...+.+.|..+-+..++.. +.-....|..|+- ++. ....++.+++|.+
T Consensus 14 c~fSp~g~yiAs~~-------------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC--~~yk~~~vqvwsl 78 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-------------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILC--VAYKDPKVQVWSL 78 (447)
T ss_pred eeECCCCCeeeeee-------------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeee--eeeccceEEEEEe
Confidence 37999999999976 3466676665555444331 2223568998865 333 2223778899976
Q ss_pred ecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE
Q 004971 298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377 (721)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~ 377 (721)
..++ -.-.+.........+.||| ||++|...+. -+.+|.+|.+.+.+...+.. +.......+|
T Consensus 79 ~Qpe---------w~ckIdeg~agls~~~WSP-dgrhiL~tse----F~lriTVWSL~t~~~~~~~~---pK~~~kg~~f 141 (447)
T KOG4497|consen 79 VQPE---------WYCKIDEGQAGLSSISWSP-DGRHILLTSE----FDLRITVWSLNTQKGYLLPH---PKTNVKGYAF 141 (447)
T ss_pred ecce---------eEEEeccCCCcceeeeECC-CcceEeeeec----ceeEEEEEEeccceeEEecc---cccCceeEEE
Confidence 6555 3344444555678899999 9999887543 34568999998876544432 2445578999
Q ss_pred cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE
Q 004971 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV 454 (721)
Q Consensus 378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l 454 (721)
.|||+..+..+.++.... .+|..-..-.-.+.......+-..+.|||||..|++.. +..++.|.-..
T Consensus 142 ~~dg~f~ai~sRrDCkdy----v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l------ 211 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDY----VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL------ 211 (447)
T ss_pred CCCCceeeeeecccHHHH----HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc------
Confidence 999999988776654211 11110000000011111122345689999999999874 34555554322
Q ss_pred eecCceeeEEcCCCCeEEEEecCCCCC------------------CCCCc---------------------------EEE
Q 004971 455 YFKNAFSTVWDPVREAVVYTSGGPEFA------------------SESSE---------------------------VDI 489 (721)
Q Consensus 455 ~~~~~~~~~~spdg~~la~~~~~~~~~------------------~~~~~---------------------------~~i 489 (721)
++....|||-++.|++.+...... ..+.. ..+
T Consensus 212 ---G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 212 ---GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred ---ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 345567777777777766431100 00000 000
Q ss_pred EEEEccC-C--CCccceEEc---ccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971 490 ISINVDD-V--DGVSAVRRL---TTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560 (721)
Q Consensus 490 ~~~~~~~-~--~~~~~~~~l---~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~ 560 (721)
|...... . ..+.....+ ++.. -...-++||+|..+++...+. -.+.||+||+..-+ +..+......+
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~-~PnalW~Wdlq~l~---l~avLiQk~pi 364 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK-YPNALWLWDLQNLK---LHAVLIQKHPI 364 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC-CCceEEEEechhhh---hhhhhhhccce
Confidence 0000000 0 000011111 1111 233457999999998877642 24589999998766 44444445556
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
....|.|.-..|++..... ++|.|...+-....+.. .+..+..+.|.-+|..|+..+.+.
T Consensus 365 raf~WdP~~prL~vctg~s-------rLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKS-------RLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred eEEEeCCCCceEEEEcCCc-------eEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence 7899999999999888764 89999998855555543 346678899999999998877653
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.1e-13 Score=144.55 Aligned_cols=430 Identities=13% Similarity=0.042 Sum_probs=268.9
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCC--CCCccccccCCCCCEEEEEecCCCCCCccccee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPY--GVADFSPAVSPSGKYTAVASYGNKGWDGEVEML 247 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~ 247 (721)
++ +|++|+..... .+-.++..+++.. +.... .......+++||+++|+++..
T Consensus 28 s~--nG~~L~t~~~d-----------~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r------------ 82 (775)
T KOG0319|consen 28 SS--NGQHLYTACGD-----------RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR------------ 82 (775)
T ss_pred CC--CCCEEEEecCc-----------eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec------------
Confidence 99 99977765433 6778888888774 22111 112234478999999988752
Q ss_pred eeeEEEEEcCCCceeEEEec--cCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc
Q 004971 248 STDIYIFLTRDGTQRVKIVE--NGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323 (721)
Q Consensus 248 ~~~i~~~d~~~g~~~~l~~~--~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (721)
..-+.+|.+.+|+..+.... .+. ..+|.|-|.++. ..+.++.+.+|++.... ....+.+++..+.
T Consensus 83 s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA--tggaD~~v~VWdi~~~~---------~th~fkG~gGvVs 151 (775)
T KOG0319|consen 83 SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA--TGGADGRVKVWDIKNGY---------CTHSFKGHGGVVS 151 (775)
T ss_pred cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE--eccccceEEEEEeeCCE---------EEEEecCCCceEE
Confidence 35788888888876554322 222 337888886666 34447899999765443 5677778787888
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC-----
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG----- 398 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~----- 398 (721)
.+.|.| +-.+....+ |..+..+++||+.++.. .+.....|...+...++++|+..+++.+.+.-...|+.
T Consensus 152 sl~F~~-~~~~~lL~s---g~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 152 SLLFHP-HWNRWLLAS---GATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK 226 (775)
T ss_pred EEEeCC-ccchhheee---cCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh
Confidence 999988 765422222 45677899999987654 35555567778889999999988887654432110000
Q ss_pred --------------------------------cceeEEEeccCCCC--cceec--ccCCCCc------------------
Q 004971 399 --------------------------------NNQLLLENIKSPLP--DISLF--RFDGSFP------------------ 424 (721)
Q Consensus 399 --------------------------------~~~l~~~~~~~~~~--~~~~~--~~~~~~~------------------ 424 (721)
...+..++..++.- ..... ..-...+
T Consensus 227 l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~ 306 (775)
T KOG0319|consen 227 LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLF 306 (775)
T ss_pred hheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEE
Confidence 00000011100000 00000 0000000
Q ss_pred ------------------------eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecC
Q 004971 425 ------------------------SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 425 ------------------------~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~ 477 (721)
-|.|+.++|+++. ...+.++++.+.....+. ...+.++....+|-.|+.++
T Consensus 307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s-- 384 (775)
T KOG0319|consen 307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS-- 384 (775)
T ss_pred EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec--
Confidence 1233334444442 334555555444444332 22333444334554444443
Q ss_pred CCCCCCCCcEEEEEEEccCC-------------------------------CCccc--------------eEEc------
Q 004971 478 PEFASESSEVDIISINVDDV-------------------------------DGVSA--------------VRRL------ 506 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~-------------------------------~~~~~--------------~~~l------ 506 (721)
.+..+.+|+++-+.. +.... +..+
T Consensus 385 -----KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 385 -----KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred -----CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 467788887743221 00000 0011
Q ss_pred ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 507 ~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
..|+..+..++++|+.+.|+..+. +....+|+++.... ...+..+...+..+.|+|..+.|+.++.+.
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~Sq---DktaKiW~le~~~l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~------- 527 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQ---DKTAKIWDLEQLRL--LGVLSGHTRGVWCVSFSKNDQLLATCSGDK------- 527 (775)
T ss_pred HhhcccccceEecCCCceEEeccc---ccceeeecccCceE--EEEeeCCccceEEEEeccccceeEeccCCc-------
Confidence 123345667899999999988887 67777888876554 777888888889999999999999998885
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCC
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNS 665 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~ 665 (721)
+|.+|.+.+..+.+-+. +|...+-...|-.+|+.|+....++ .|-+|+.++++. ..|-.|.
T Consensus 528 TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adG-----------------liKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 528 TVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADG-----------------LIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred eEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCC-----------------cEEEEeccchhhhhhhhhcc
Confidence 99999999988776554 4777888899999999998877765 488999999874 5777788
Q ss_pred CCCCCceecCCcC
Q 004971 666 FEDGTPAWGPRFI 678 (721)
Q Consensus 666 ~~~~~~~~sp~~l 678 (721)
..+++..-+|...
T Consensus 590 DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 590 DRVWALSVSPLLD 602 (775)
T ss_pred ceeEEEeecCccc
Confidence 7778888788533
No 47
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.69 E-value=5.6e-15 Score=154.78 Aligned_cols=278 Identities=19% Similarity=0.251 Sum_probs=185.4
Q ss_pred cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-
Q 004971 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY- 455 (721)
Q Consensus 378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~- 455 (721)
|||++++++.......-.......+++.++..+. ..+.........+.|||||++|+|+.+.+||+.++.++..++|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 7999999987665443333334678888887752 22222233456789999999999999999999999988888888
Q ss_pred ec-------------------CceeeEEcCCCCeEEEEecCCC------------------------CC---CCCCcEEE
Q 004971 456 FK-------------------NAFSTVWDPVREAVVYTSGGPE------------------------FA---SESSEVDI 489 (721)
Q Consensus 456 ~~-------------------~~~~~~~spdg~~la~~~~~~~------------------------~~---~~~~~~~i 489 (721)
++ ....+.|||||++|+|...... ++ .....+.|
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l 160 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL 160 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence 22 1246789999999999852110 00 11245667
Q ss_pred EEEEccCCCCccceEEcc------cCCCCCcceEEccCCCEEEEE-EeeC-CceeEEEEECCCCcccceEECcCCCcC--
Q 004971 490 ISINVDDVDGVSAVRRLT------TNGKNNAFPSVSPDGKWIVFR-STRT-GYKNLYIMDAEGGEGYGLHRLTEGPWS-- 559 (721)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~SpDg~~l~~~-s~~~-g~~~l~~~d~~~g~~~~~~~l~~~~~~-- 559 (721)
+.+++.++ +...+. ........+.|++|++.|++. .+|. ....|+++|..++..+.+..-....+.
T Consensus 161 ~v~~~~~~----~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 161 FVVDLASG----KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEESSST----CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred EEEECCCC----cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 77776654 322222 122345568999999966555 4443 345888999988875433333333221
Q ss_pred ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc-CCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971 560 DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA-NHPYFSPDGKSIVFTSDYGGISAEPIS 637 (721)
Q Consensus 560 ~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~ 637 (721)
...+.|. +++..+++...+ +|..+||+++.+++..++|+.. ...+ ..+.|+++++.|+|.+...+..
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~----~G~~hly~~~~~~~~~~~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~----- 305 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISER----DGYRHLYLYDLDGGKPRQLTSG--DWEVTSILGWDEDNNRIYFTANGDNPG----- 305 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEET----TSSEEEEEEETTSSEEEESS-S--SS-EEEEEEEECTSSEEEEEESSGGTT-----
T ss_pred ecccccccCCCCEEEEEEEc----CCCcEEEEEcccccceeccccC--ceeecccceEcCCCCEEEEEecCCCCC-----
Confidence 2345665 899999999886 4789999999999988888752 3334 4578999999999999874311
Q ss_pred CCCCCCCCccEEEEEcC-CCCeEEeccCCCCCCCceecCCc
Q 004971 638 TPHQYQPYGEIFKIKLD-GSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 638 ~~~~~~~~~~l~~~d~~-~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
..+||.++++ +++.++||...+....+.|||+.
T Consensus 306 -------~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 306 -------ERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp -------SBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred -------ceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 3579999999 99999999866544479999974
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=8.3e-15 Score=134.60 Aligned_cols=273 Identities=13% Similarity=0.108 Sum_probs=195.0
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
+...+.+++|.. ||.+++-. +.+..+.+|+++..+...-....++...+....|+|...-++++...+.
T Consensus 19 ~~~~v~Sv~wn~-~g~~lasg-----s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk----- 87 (313)
T KOG1407|consen 19 HVQKVHSVAWNC-DGTKLASG-----SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK----- 87 (313)
T ss_pred hhhcceEEEEcc-cCceeeec-----ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCc-----
Confidence 344677899999 99999874 3455588888877643322233455666778899987765555433332
Q ss_pred CcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971 398 GNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~ 473 (721)
.+.++++..... .............|||+|+++++.+ +..|..+|...-+...-. .-.+..+.|+-++..++.
T Consensus 88 ---~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 88 ---TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred ---eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence 356666655422 2222334455689999999999985 677888887665543322 345667889866655554
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
++ ..+.++|..+..-. .+..|..+........|+|+||++++.+. +..+-+||++.--. ++.+
T Consensus 165 t~-------GlG~v~ILsypsLk-----pv~si~AH~snCicI~f~p~GryfA~GsA---DAlvSLWD~~ELiC--~R~i 227 (313)
T KOG1407|consen 165 TN-------GLGCVEILSYPSLK-----PVQSIKAHPSNCICIEFDPDGRYFATGSA---DALVSLWDVDELIC--ERCI 227 (313)
T ss_pred ec-------CCceEEEEeccccc-----cccccccCCcceEEEEECCCCceEeeccc---cceeeccChhHhhh--heee
Confidence 43 45788888876432 55667778777788899999999999987 78889999985433 6778
Q ss_pred cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+...+.+..++||-||++||.++.+. -|-+.++.+|...--.+ ..+....++|.|..-.|+|+..+..
T Consensus 228 sRldwpVRTlSFS~dg~~lASaSEDh-------~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGRMLASASEDH-------FIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ccccCceEEEEeccCcceeeccCccc-------eEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCC
Confidence 88888899999999999999999885 67888888885332222 5677789999999999999988764
No 49
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=135.20 Aligned_cols=266 Identities=14% Similarity=0.051 Sum_probs=198.8
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVY 442 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~ 442 (721)
.+|...+..+.|++|+++|+..+.++. +.+++..+. ...+.+....+-..+|||.|+.+|..+ ++...
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGk---------lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGK---------LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCe---------EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 456778889999999999999887776 566665433 222333223334469999999999885 66777
Q ss_pred EEECCCC--c-----eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971 443 VVNSDGS--N-----RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513 (721)
Q Consensus 443 v~d~~~g--~-----~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 513 (721)
+|++.+. + .+.+. .+.+....|-+|+..| ..+ .+.+.-+|++.... ....+..|.+.+
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~S-------GD~TCalWDie~g~-----~~~~f~GH~gDV 189 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TGS-------GDMTCALWDIETGQ-----QTQVFHGHTGDV 189 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCceE-ecC-------CCceEEEEEcccce-----EEEEecCCcccE
Confidence 7887644 1 12333 4567778888866544 433 57889999998754 667777888889
Q ss_pred cceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 514 AFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 514 ~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
..+.++| +++.++..+- +...++||+..+.. ......+..+++.+.|-|+|..++.++++. ...+||
T Consensus 190 ~slsl~p~~~ntFvSg~c---D~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~-------tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGC---DKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDA-------TCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccc---ccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCc-------eeEEEe
Confidence 9999999 9999887766 67899999998875 556677888899999999999999888875 889999
Q ss_pred cCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-cCCCCeEEeccCCCCCCC
Q 004971 593 PNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-LDGSDLKRLTQNSFEDGT 670 (721)
Q Consensus 593 ~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~~~lt~~~~~~~~ 670 (721)
+...+...+... .....+.+++||..|++|+....+. ...+|| +++...-.|..|.+.+..
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-----------------~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-----------------TCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC-----------------ceeEeeccccceEEEeeccCCeeEE
Confidence 988766555532 1335678899999999876654443 388999 466667799999999999
Q ss_pred ceecCCcCCccc
Q 004971 671 PAWGPRFIRPVD 682 (721)
Q Consensus 671 ~~~sp~~l~~~~ 682 (721)
..-+|+.++...
T Consensus 321 l~~s~DG~av~T 332 (343)
T KOG0286|consen 321 LGVSPDGMAVAT 332 (343)
T ss_pred EEECCCCcEEEe
Confidence 999998766554
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.8e-15 Score=147.24 Aligned_cols=274 Identities=15% Similarity=0.109 Sum_probs=185.8
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
..+.-.+.-+.||+ +|++||.++.. ...-+|++.. ...+......++...+..+.||||.++|+.+..+..
T Consensus 221 ~~htdEVWfl~FS~-nGkyLAsaSkD-----~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~-- 292 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSH-NGKYLASASKD-----STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV-- 292 (519)
T ss_pred hhCCCcEEEEEEcC-CCeeEeeccCC-----ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--
Confidence 34444667889999 99999986533 2233444322 234444556667777888999999999998776655
Q ss_pred CCCCcceeEEEeccCCCCccee---cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971 395 REDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV 467 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd 467 (721)
+++++..++...... ........+|-|||.+++..+ +..++.||+++.....-. ...+..++.++|
T Consensus 293 -------~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 293 -------LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred -------eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 566666555322111 122345679999999988774 889999999987533222 345788999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
|++++.+. .+..+.+|...... .+.+......+.....|.||+++++.-. ...|.+||++....
T Consensus 366 gk~vl~v~-------~d~~i~l~~~e~~~------dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 366 GKYVLLVT-------VDKKIRLYNREARV------DRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKL 429 (519)
T ss_pred CcEEEEEe-------cccceeeechhhhh------hhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhH
Confidence 99999886 46778887765432 1223333447788999999998887766 77899999985442
Q ss_pred cceEECcCCCcC--ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 548 YGLHRLTEGPWS--DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 548 ~~~~~l~~~~~~--~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
+.+...+... +..-.|. -|.+.|+.++.+. +||+|+..+|++..... +|...++.++|+|-..++..
T Consensus 430 --v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~-------kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 430 --VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS-------KVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred --HHHhhcccccceEEEeccCCCCcceEEecCCCc-------eEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhh
Confidence 4444433221 1222343 3456777777664 99999999998877665 48888999999998876554
Q ss_pred EEecCC
Q 004971 625 TSDYGG 630 (721)
Q Consensus 625 ~~~~~~ 630 (721)
++.+++
T Consensus 500 SasDDg 505 (519)
T KOG0293|consen 500 SASDDG 505 (519)
T ss_pred ccCCCC
Confidence 444443
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.4e-15 Score=147.94 Aligned_cols=268 Identities=14% Similarity=0.103 Sum_probs=181.8
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEEe-CCcE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGV 441 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l 441 (721)
..|...++...||++|++|+.++.+.. ..+|....... ...+......+.++.||||.++|+.++ +..+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~T-------aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDST-------AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCce-------EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 445677888999999999999877666 44555544443 122233334456789999999998884 6679
Q ss_pred EEEECCCCceEEEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcce
Q 004971 442 YVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFP 516 (721)
Q Consensus 442 ~v~d~~~g~~~~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 516 (721)
++||+++|+.+...+ ..+.+.+|-|||.+++..+ .+. .++..++++. ......... ..+..+
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs-------~dr--~i~~wdlDgn----~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS-------PDR--TIIMWDLDGN----ILGNWEGVRDPKVHDL 360 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC-------CCC--cEEEecCCcc----hhhcccccccceeEEE
Confidence 999999999877762 3567899999999988875 234 4444555543 222222222 356778
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
+.++||++++.... +..|++++..+... +.+......+..+..|.||+++++.-... .+.+||+...
T Consensus 361 ait~Dgk~vl~v~~---d~~i~l~~~e~~~d---r~lise~~~its~~iS~d~k~~LvnL~~q-------ei~LWDl~e~ 427 (519)
T KOG0293|consen 361 AITYDGKYVLLVTV---DKKIRLYNREARVD---RGLISEEQPITSFSISKDGKLALVNLQDQ-------EIHLWDLEEN 427 (519)
T ss_pred EEcCCCcEEEEEec---ccceeeechhhhhh---hccccccCceeEEEEcCCCcEEEEEcccC-------eeEEeecchh
Confidence 99999999998886 78999999886542 22333344568899999999877766654 8999999854
Q ss_pred ceEEeeecCCCC--CcCCeEEC-CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCce
Q 004971 597 GLRKLIQSGSAG--RANHPYFS-PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPA 672 (721)
Q Consensus 597 ~~~~l~~~~~~~--~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~ 672 (721)
+..+-.. ++.. .+-.-.|- -|.++|+..+.++ .||+|+..++++ ..|+.|...+...+
T Consensus 428 ~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~-----------------kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 428 KLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDS-----------------KVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred hHHHHhh-cccccceEEEeccCCCCcceEEecCCCc-----------------eEEEEEccCCceeEeecCCcceeeEEe
Confidence 3322211 1111 11122332 2334454444443 599999888765 69999999999999
Q ss_pred ecCC---cCCccccc
Q 004971 673 WGPR---FIRPVDVE 684 (721)
Q Consensus 673 ~sp~---~l~~~~~~ 684 (721)
|.|. |+|.++=|
T Consensus 490 wNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 490 WNPADPEMFASASDD 504 (519)
T ss_pred cCCCCHHHhhccCCC
Confidence 9984 77777644
No 52
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.9e-13 Score=129.77 Aligned_cols=285 Identities=13% Similarity=0.166 Sum_probs=183.3
Q ss_pred eeeEEEEECCC--CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee------c
Q 004971 346 YRHIELFDLVK--NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL------F 417 (721)
Q Consensus 346 ~~~l~l~dl~t--g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~ 417 (721)
...|++|++.+ |+...+ ...........++|+|++++|+.....+...+ ..-|..+-..+ .++. .
T Consensus 15 s~gI~v~~ld~~~g~l~~~-~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg----vaay~iD~~~G--~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL-QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG----VAAYRIDPDDG--RLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeCcccccchh-hhccccCCCceEEECCCCCEEEEEEecCCcCc----EEEEEEcCCCC--eEEEeeccccC
Confidence 44578877763 433222 22333456677899999999998776643211 23333332222 2222 1
Q ss_pred ccCCCCceeCcCCCEEEEE--eCCcEEEEECCC-CceEEE----e-ecC----------ceeeEEcCCCCeEEEEecCCC
Q 004971 418 RFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDG-SNRRQV----Y-FKN----------AFSTVWDPVREAVVYTSGGPE 479 (721)
Q Consensus 418 ~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~-g~~~~l----~-~~~----------~~~~~~spdg~~la~~~~~~~ 479 (721)
.....+++++++|+.|+.+ ..+.|.++.+.. |.+... . .+. +....++||+++|+...
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D---- 163 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD---- 163 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee----
Confidence 1222457899999988887 367788888743 543222 1 222 45678999999999886
Q ss_pred CCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----
Q 004971 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE---- 555 (721)
Q Consensus 480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~---- 555 (721)
....++.+|+++ ++.........+ ..+....+++|+|+|+..++..+-++.-.+|.++...|+...+..+..
T Consensus 164 --LG~Dri~~y~~~-dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 164 --LGTDRIFLYDLD-DGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred --cCCceEEEEEcc-cCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 345778888887 332111122223 233467889999999999999887666667777776677443433321
Q ss_pred --CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-cCCeEECCCCCEEEEEEecCCCc
Q 004971 556 --GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-ANHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 556 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
+......+..||||++|+.+.... ..-.+|.+|.+++++..+......+. ...+.++++|++|+.+..++..-
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~----dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGH----DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCC----CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence 122346788999999877665543 44567777888887665543323343 68899999999999988877542
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.+|..|.++|++..+..
T Consensus 316 --------------~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 316 --------------TVFERDKETGRLTLLGR 332 (346)
T ss_pred --------------EEEEEcCCCceEEeccc
Confidence 58888889999888876
No 53
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-14 Score=133.80 Aligned_cols=193 Identities=14% Similarity=0.057 Sum_probs=145.2
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
......|+||++....+ ++.+++||+.+|+..+.+ ...+..+++|+|.+.|+..+ .+..+.+|..-..
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS-------rDkTiklwnt~g~- 137 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS-------RDKTIKLWNTLGV- 137 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC-------Ccceeeeeeeccc-
Confidence 44578999998776664 889999999999876666 45788999999999999886 5788999987643
Q ss_pred CCCccceEEcccC--CCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971 497 VDGVSAVRRLTTN--GKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 497 ~~~~~~~~~l~~~--~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l 572 (721)
....+... ...+..+.|+|. .-.|+..+. +..+.+||+++-+. ......+...++.+++||||..+
T Consensus 138 -----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~---DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 138 -----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASW---DKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred -----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC---CceEEEEccCCcch--hhccccccccEEEEEECCCCCEE
Confidence 33333333 356788999998 455665666 78999999998663 33445567778899999999988
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
+.+..++ .+++||++.++..... ++...+.+++|+|+.=+|..+... .|.+||
T Consensus 208 asGgkdg-------~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at~~------------------sIkIwd 260 (315)
T KOG0279|consen 208 ASGGKDG-------EAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAATAT------------------SIKIWD 260 (315)
T ss_pred ecCCCCc-------eEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeeccCC------------------ceEEEe
Confidence 8766554 8999999888653322 256778999999986666544432 289999
Q ss_pred cCCCCe
Q 004971 653 LDGSDL 658 (721)
Q Consensus 653 ~~~~~~ 658 (721)
++++..
T Consensus 261 l~~~~~ 266 (315)
T KOG0279|consen 261 LESKAV 266 (315)
T ss_pred ccchhh
Confidence 998854
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.66 E-value=3.4e-14 Score=144.32 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=183.8
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
...|++++++++. ...++.+.+|...... ....+..+...+..+.|+| +++.++... .+..|.
T Consensus 14 ~~~~~~~~~~l~~--~~~~g~i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-----~~~~i~ 76 (289)
T cd00200 14 CVAFSPDGKLLAT--GSGDGTIKVWDLETGE---------LLRTLKGHTGPVRDVAASA-DGTYLASGS-----SDKTIR 76 (289)
T ss_pred EEEEcCCCCEEEE--eecCcEEEEEEeeCCC---------cEEEEecCCcceeEEEECC-CCCEEEEEc-----CCCeEE
Confidence 4478999776553 2337888888654332 3344444544556889999 998888754 245699
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCc
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSP 428 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~Sp 428 (721)
+||+.+++. +.....+...+..+.|+++++.++....++ .+.++++..... .+.........+.|+|
T Consensus 77 i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 77 LWDLETGEC--VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---------TIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEcCcccc--eEEEeccCCcEEEEEEcCCCCEEEEecCCC---------eEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 999987653 222233455677899999977666544233 355666543211 1111122245578999
Q ss_pred CCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE
Q 004971 429 KGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504 (721)
Q Consensus 429 DG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 504 (721)
+++.++... ++.|.+||+..++..... ...+..+.|+|+++.+++.+ .++.+.+|++.... ...
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i~d~~~~~-----~~~ 213 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-------SDGTIKLWDLSTGK-----CLG 213 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-------CCCcEEEEECCCCc-----eec
Confidence 988888776 889999999876644333 34678999999999998886 36788888876532 334
Q ss_pred EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584 (721)
Q Consensus 505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 584 (721)
.+..+...+..+.|+|+++.++..+. +..|++|+..+++. ...+..+...+..+.|+|+++.|+.+..++
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----- 283 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSE---DGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADG----- 283 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcC---CCcEEEEEcCCcee--EEEccccCCcEEEEEECCCCCEEEEecCCC-----
Confidence 44345557778999999887776664 57899999987664 555555555678899999999998888764
Q ss_pred ceeEEEEe
Q 004971 585 SFEMYLIH 592 (721)
Q Consensus 585 ~~~i~~~d 592 (721)
.|.+|+
T Consensus 284 --~i~iw~ 289 (289)
T cd00200 284 --TIRIWD 289 (289)
T ss_pred --eEEecC
Confidence 677764
No 55
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.5e-14 Score=133.95 Aligned_cols=282 Identities=15% Similarity=0.082 Sum_probs=183.3
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE--EeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI--ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~--~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.++...+..++||. ||++++..+ .++.|++|++..-+.+ ...+..-+......+.|+||-+.+++....+
T Consensus 83 KgH~~~vt~~~FsS-dGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g-- 154 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSS-DGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG-- 154 (420)
T ss_pred hccCCceeeeEEcC-CCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC--
Confidence 35556778899999 999999865 4566999998753211 1111111233566789999999988866544
Q ss_pred CCCCCcceeEEEeccC---CCCcceeccc-----------CCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--e
Q 004971 394 TREDGNNQLLLENIKS---PLPDISLFRF-----------DGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--F 456 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~---~~~~~~~~~~-----------~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~ 456 (721)
..++++.+.- +......... ....+.....+++|+.+ .+..|.+|++.+.....|. .
T Consensus 155 ------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq 228 (420)
T KOG2096|consen 155 ------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ 228 (420)
T ss_pred ------CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc
Confidence 3455554421 1111111000 01123445556666666 4789999999976666665 3
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc---cceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV---SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
......+.||+|++|+.... ...+.+|.+-....+.. ..+..|..+...+..++|||+.++++..+.
T Consensus 229 ~~n~~aavSP~GRFia~~gF-------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk--- 298 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGF-------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK--- 298 (420)
T ss_pred ccccceeeCCCCcEEEEecC-------CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec---
Confidence 45568899999999998863 46788887765443211 233445666677888999999999999986
Q ss_pred ceeEEEEECCC----C-cccceEE----CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 534 YKNLYIMDAEG----G-EGYGLHR----LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 534 ~~~l~~~d~~~----g-~~~~~~~----l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
+..+.+||.+- + .++.++. +-........+..||.|+.|+.+... .|.++....|+.......
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs--------~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS--------DLKVFASEDGKDYPELED 370 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC--------ceEEEEcccCccchhHHH
Confidence 55666666531 1 1111111 11112334578999999999988865 688888877765544333
Q ss_pred CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 605 GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.+...+.+++|++||++++....+.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred hhcCceeeEEecCCCcEEeeeccee
Confidence 4778899999999999999877654
No 56
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=7.9e-13 Score=128.35 Aligned_cols=262 Identities=15% Similarity=0.124 Sum_probs=175.3
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
......++|+| ++++|+.............+-+|..+|+...+......+.....++++++|+.|+.+....+.
T Consensus 39 ~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~----- 112 (346)
T COG2706 39 LGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS----- 112 (346)
T ss_pred cCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce-----
Confidence 33556789999 999887765442222333455666668877776554444455788999999999987766542
Q ss_pred cceeEEEeccC-C-CCcc-------------eecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe------
Q 004971 399 NNQLLLENIKS-P-LPDI-------------SLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY------ 455 (721)
Q Consensus 399 ~~~l~~~~~~~-~-~~~~-------------~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~------ 455 (721)
+.+..+.. + .... .+......+..+.|||++|+.. +...|++++++.|......
T Consensus 113 ---v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 113 ---VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ---EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 33333321 1 1111 1111113346789999999888 5788999999987654333
Q ss_pred ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc---cCC------CCCcceEEccCCCEEE
Q 004971 456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNG------KNNAFPSVSPDGKWIV 526 (721)
Q Consensus 456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~------~~~~~~~~SpDg~~l~ 526 (721)
..+.+.+.|.|+++..++++ .-++++.+|.++...+ +.+.+. ..+ .....+.+||||++|+
T Consensus 190 G~GPRHi~FHpn~k~aY~v~------EL~stV~v~~y~~~~g----~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVN------ELNSTVDVLEYNPAVG----KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred CCCcceEEEcCCCcEEEEEe------ccCCEEEEEEEcCCCc----eEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 45778999999999999987 3578999999987643 333332 211 2345578999999887
Q ss_pred EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
........-.+|.+|.++|+...+............+.++|+|+.|+.+..+. ..-.+|..|-.+|++.++..
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s----d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS----DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC----CcEEEEEEcCCCceEEeccc
Confidence 66543334467777888887433333333333357889999999998888774 56788999999998777654
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.6e-13 Score=127.80 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=178.8
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
...+..+.|++ +|..++..+ ++..|.+||..+++..... ......+....|......+++.+...+
T Consensus 14 ~~~i~sl~fs~-~G~~litss-----~dDsl~LYd~~~g~~~~ti--~skkyG~~~~~Fth~~~~~i~sStk~d------ 79 (311)
T KOG1446|consen 14 NGKINSLDFSD-DGLLLITSS-----EDDSLRLYDSLSGKQVKTI--NSKKYGVDLACFTHHSNTVIHSSTKED------ 79 (311)
T ss_pred CCceeEEEecC-CCCEEEEec-----CCCeEEEEEcCCCceeeEe--ecccccccEEEEecCCceEEEccCCCC------
Confidence 44667899999 999988743 2335999999999843332 223333444666666666666554322
Q ss_pred cceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEE
Q 004971 399 NNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~ 473 (721)
..|...++... +-+..+ ...+..+..+|-+..++..+ +..|++||+...+.+-+. .....-.+|.|.|-.+|.
T Consensus 80 -~tIryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 80 -DTIRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred -CceEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 22333333221 011111 11234568888887766664 779999999977765554 445557899999998888
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
+. ....+.||++..-+. ++.....+... ......+.||||||+|+...+ ...++++|.-+|.. ...
T Consensus 158 ~~-------~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~--~~t 224 (311)
T KOG1446|consen 158 AN-------GSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTV--KST 224 (311)
T ss_pred ec-------CCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcE--eee
Confidence 86 334889998875432 11222233322 245567899999999999987 77899999999984 333
Q ss_pred CcCC--Cc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 553 LTEG--PW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 553 l~~~--~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+... .. ......|+|||+.|+.++.++ .|.+|++.++.....+.....+....+.|.|- +..+++...
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~s 295 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDG-------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSASS 295 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCC-------cEEEEEcCCCcEeeEecCCCCCCccccccCCc--eeeeeecCc
Confidence 3322 11 224678999999999888876 89999999998776665434566677889986 555555544
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.64 E-value=4.7e-14 Score=152.48 Aligned_cols=265 Identities=19% Similarity=0.181 Sum_probs=189.0
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC--CCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEEC-
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS--PLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNS- 446 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~- 446 (721)
.+....||+||+.++....++. ..++...... -...+.........++|||||+.++.. .+..|++||+
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~-------i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGL-------IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCc-------EEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 3455889999999888766665 2333321111 011112223334568999999988877 4889999999
Q ss_pred CCCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC
Q 004971 447 DGSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523 (721)
Q Consensus 447 ~~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~ 523 (721)
..+.. +.+. ...+....|+|+|+.++.++ .++.++||++.... ..+.+..+...+..++|++||+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-------~D~tvriWd~~~~~-----~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-------DDGTVRIWDVRTGE-----CVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEec-------CCCcEEEEeccCCe-----EEEeeeccCCceEEEEECCCCC
Confidence 44443 4443 56788999999997777775 68999999998733 7788888888899999999999
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
.|+..+. +..|.+||+.++.......+..... .+..+.|+|+|++|+....+. .+.+||+..+.....
T Consensus 302 ~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-------~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 302 LLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-------TLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEEcCC---CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-------eEEEEEccCCcceee
Confidence 9998866 7899999999988210233333322 368899999999999998875 899999998766554
Q ss_pred eecCCCC---CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccC-CCCCCCceecCC
Q 004971 602 IQSGSAG---RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQN-SFEDGTPAWGPR 676 (721)
Q Consensus 602 ~~~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~-~~~~~~~~~sp~ 676 (721)
... +.. -...+..+++|++++..+.+.. |++||+.++. +.++..+ ...+..+.|+|.
T Consensus 372 ~~~-~~~~~~~~~~~~~~~~~~~i~sg~~d~~-----------------v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 372 YTG-HSNLVRCIFSPTLSTGGKLIYSGSEDGS-----------------VYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred ecc-cCCcceeEecccccCCCCeEEEEeCCce-----------------EEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 433 322 2335566889999988777653 9999998764 4577766 555677888774
Q ss_pred --cCCccc
Q 004971 677 --FIRPVD 682 (721)
Q Consensus 677 --~l~~~~ 682 (721)
+++...
T Consensus 434 ~~~~~s~s 441 (456)
T KOG0266|consen 434 ENLIASSS 441 (456)
T ss_pred cCeeeecC
Confidence 444443
No 59
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.63 E-value=7.3e-15 Score=154.79 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=148.8
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
..+.+.+|...+....|+| |.++|+-. +++..+++|.+.+..... ...+|...++.+.|+|-|-+++.++.+
T Consensus 443 ~~~~L~GH~GPVyg~sFsP-d~rfLlSc-----SED~svRLWsl~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSP-DRRFLLSC-----SEDSSVRLWSLDTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred eeEEeecCCCceeeeeecc-cccceeec-----cCCcceeeeecccceeEE--EecCCCcceeeEEecCCceEEEecCCC
Confidence 4555778888889999999 99988763 356679999999876433 345777788899999999888877665
Q ss_pred CCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEeecCceeeEEcCCCC
Q 004971 391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVRE 469 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~ 469 (721)
.. .++|..+-..+..-+...-.++....|+|++.+++.. .+..+.+||+.+|.
T Consensus 515 ~t-------ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------------------- 568 (707)
T KOG0263|consen 515 QT-------ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------------------- 568 (707)
T ss_pred ce-------eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-------------------
Confidence 55 5566655332222111112223334555555555444 24445555544433
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
.++.++.|...+..++|||+|++|+..+. +..|.+||+.+|+.
T Consensus 569 --------------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e---d~~I~iWDl~~~~~-- 611 (707)
T KOG0263|consen 569 --------------------------------SVRIFTGHKGPVTALAFSPCGRYLASGDE---DGLIKIWDLANGSL-- 611 (707)
T ss_pred --------------------------------EEEEecCCCCceEEEEEcCCCceEeeccc---CCcEEEEEcCCCcc--
Confidence 34455556667888999999999999887 78999999999886
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+..+..+...+..+.||.||..|+.++.+. .|.+||+..
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-------sV~lWD~~~ 650 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGADN-------SVRLWDLTK 650 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCCC-------eEEEEEchh
Confidence 777777788889999999999999988875 899999854
No 60
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1.5e-12 Score=135.85 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=153.0
Q ss_pred eeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-CCC-Cccee--cccC
Q 004971 346 YRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPL-PDISL--FRFD 420 (721)
Q Consensus 346 ~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~--~~~~ 420 (721)
+..|.+||+.+ ++.+.+.... .......++++||++.|+...... ..+...++. .+. ..+.. ....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCceEEeeeecCCCC
Confidence 35599999964 4544443332 234456789999999998765432 234444443 221 11111 1223
Q ss_pred CCCceeCcCCCEEEEEe--CCcEEEEECCC-Cce-EEE---e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDG-SNR-RQV---Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~-g~~-~~l---~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...++++|||++|+... .+.|.+|+++. +.. ..+ . ...+....++|||+++++... ..+.+.+|++
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~ 155 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTL 155 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEE
Confidence 45678999999988874 67899999863 321 111 1 224566789999999988763 5678889988
Q ss_pred EccCCCCc--cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCC------CcCcee
Q 004971 493 NVDDVDGV--SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEG------PWSDTM 562 (721)
Q Consensus 493 ~~~~~~~~--~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~------~~~~~~ 562 (721)
+..+.... .....+.. .....+++|+|||++|++.... ...|.+|+++ +++.+.+..+... ......
T Consensus 156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 75331000 00011212 2345678999999999888754 4567777765 3442222222211 111235
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCC--CceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+.++|||++|+.+.... ..|.+|+++. +..+.+-..........+.++|||++|+.+....
T Consensus 233 i~~~pdg~~lyv~~~~~------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 233 IHITPDGRHLYACDRTA------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EEECCCCCEEEEecCCC------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 78999999988874332 3677776643 3222211111223456789999999999876544
No 61
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=1.8e-12 Score=135.32 Aligned_cols=280 Identities=11% Similarity=0.058 Sum_probs=161.6
Q ss_pred CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC-CCceEEeecc
Q 004971 287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV-KNKFIELTRF 365 (721)
Q Consensus 287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~-tg~~~~l~~~ 365 (721)
..++.+.+|++...+.. ...+..........++++| ||++|+..... ...|..|++. +++...+...
T Consensus 9 ~~~~~I~~~~~~~~g~l-------~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 9 PESQQIHVWNLNHEGAL-------TLLQVVDVPGQVQPMVISP-DKRHLYVGVRP----EFRVLSYRIADDGALTFAAES 76 (330)
T ss_pred CCCCCEEEEEECCCCce-------eeeeEEecCCCCccEEECC-CCCEEEEEECC----CCcEEEEEECCCCceEEeeee
Confidence 34677888876432211 1222222233456789999 99988775432 2448888876 4544333322
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-C-C-Ccceec--ccCCCCceeCcCCCEEEEE--eC
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-P-L-PDISLF--RFDGSFPSFSPKGDRIAFV--EF 438 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~-~-~~~~~~--~~~~~~~~~SpDG~~la~~--~~ 438 (721)
. .......++++|+|++|+.+.... ..+.+.++.. + . ..+... .......+++|||+++++. ..
T Consensus 77 ~-~~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 77 P-LPGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred c-CCCCceEEEECCCCCEEEEEEcCC--------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC
Confidence 1 123456789999999998876543 2355555532 1 1 111111 1123446799999998777 36
Q ss_pred CcEEEEECCC-CceE-------EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC
Q 004971 439 PGVYVVNSDG-SNRR-------QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509 (721)
Q Consensus 439 ~~l~v~d~~~-g~~~-------~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 509 (721)
+.|++||++. +... .+. ......+.|+|||++++++.. ..+.+.+|+++..++ .......+...
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~------~~~~v~v~~~~~~~~-~~~~~~~~~~~ 220 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE------LNSSVDVWQLKDPHG-EIECVQTLDMM 220 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec------CCCEEEEEEEeCCCC-CEEEEEEEecC
Confidence 8899999975 3221 111 334668999999999999862 468899999975322 00112222211
Q ss_pred C------CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 510 G------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 510 ~------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
+ .....+.++|||++|++.... ...|.+|+++ ++..+.+..+..+ .....+.++|||++|+.+....
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~-- 295 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKS-- 295 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccC--
Confidence 1 112247799999999887432 3466666664 3332212222222 2235789999999999887542
Q ss_pred CCCceeEEEEecCCCceEEe
Q 004971 582 GSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 582 ~~~~~~i~~~d~~~~~~~~l 601 (721)
+.-.||.+|..++....+
T Consensus 296 --~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 296 --HHISVYEIDGETGLLTEL 313 (330)
T ss_pred --CcEEEEEEcCCCCcEEEc
Confidence 333444445455554433
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.5e-12 Score=136.15 Aligned_cols=451 Identities=12% Similarity=0.029 Sum_probs=283.0
Q ss_pred eEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEe
Q 004971 45 DIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYD 124 (721)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 124 (721)
-+|.+.-. .-..++.+|.+++....|.|+-. ..+++++..|+.+++|.+
T Consensus 130 ~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~--------------------------~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 130 KVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWN--------------------------RWLLASGATDGTVRVWNL 178 (775)
T ss_pred EEEEeeCC-----EEEEEecCCCceEEEEEeCCccc--------------------------hhheeecCCCceEEEEEc
Confidence 47776531 23577889999999999999865 157788888899888887
Q ss_pred eeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeC
Q 004971 125 AVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL 203 (721)
Q Consensus 125 ~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~ 203 (721)
.. +. .--..+. |.. .| ..+ ++ ++ |+..+++++.+. -++..++
T Consensus 179 ~~--~~----tcl~~~~~H~S-----~v--tsL-------~~-----~~--d~~~~ls~~RDk----------vi~vwd~ 221 (775)
T KOG0319|consen 179 ND--KR----TCLHTMILHKS-----AV--TSL-------AF-----SE--DSLELLSVGRDK----------VIIVWDL 221 (775)
T ss_pred cc--Cc----hHHHHHHhhhh-----he--eee-------ee-----cc--CCceEEEeccCc----------EEEEeeh
Confidence 52 11 1000122 211 11 111 45 88 898888876552 4444454
Q ss_pred CCcceEeecCC-CCCccccccCCC-----CCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC----cc
Q 004971 204 KTGLTRRLTPY-GVADFSPAVSPS-----GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG----WP 272 (721)
Q Consensus 204 ~~g~~~~lt~~-~~~~~~p~~SPD-----G~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~----~~ 272 (721)
..-+..++-|. ...+.. .+-++ |.++..+.. .+.+-.++.+++........+ +. ..
T Consensus 222 ~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~TaG~------------~g~~~~~d~es~~~~~~~~~~~~~e~~~~~ 288 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESV-VRLREELGGKGEYIITAGG------------SGVVQYWDSESGKCVYKQRQSDSEEIDHLL 288 (775)
T ss_pred hhhhhhheechhhheeeE-EEechhcCCcceEEEEecC------------CceEEEEecccchhhhhhccCCchhhhcce
Confidence 44333332232 222222 33333 446666542 246777788777643222111 11 11
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee-ecCCCCEEEEEEecCCCCeeeEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT-SPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
.-..+++++.. .. +..+-+| ..+.. .-..++.+....+.++.| .| +.++++.+++. ..+++
T Consensus 289 ~~~~~~~~l~v--ta-eQnl~l~---d~~~l------~i~k~ivG~ndEI~Dm~~lG~-e~~~laVATNs-----~~lr~ 350 (775)
T KOG0319|consen 289 AIESMSQLLLV--TA-EQNLFLY---DEDEL------TIVKQIVGYNDEILDMKFLGP-EESHLAVATNS-----PELRL 350 (775)
T ss_pred eccccCceEEE--Ec-cceEEEE---Ecccc------EEehhhcCCchhheeeeecCC-ccceEEEEeCC-----CceEE
Confidence 22233454332 11 3344444 22211 022233333334445554 66 77899988754 34899
Q ss_pred EECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceecccCCCCceeC
Q 004971 352 FDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRFDGSFPSFS 427 (721)
Q Consensus 352 ~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~S 427 (721)
+++.+-....+ .+|...+..+....+|..|+..+.+.. ..+|..+-... .............++.+
T Consensus 351 y~~~~~~c~ii---~GH~e~vlSL~~~~~g~llat~sKD~s-------vilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 351 YTLPTSYCQII---PGHTEAVLSLDVWSSGDLLATGSKDKS-------VILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EecCCCceEEE---eCchhheeeeeecccCcEEEEecCCce-------EEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 99987765533 455666666665566766766655555 45555421111 01111122223345566
Q ss_pred cCCCE-EEEE-eCCcEEEEECCCCce----EEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 428 PKGDR-IAFV-EFPGVYVVNSDGSNR----RQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 428 pDG~~-la~~-~~~~l~v~d~~~g~~----~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
..|-. ++.+ .+..|.+|++...+. ..+. +..+..++.+|+.+.++..+ .+....||.++
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S-------qDktaKiW~le 493 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS-------QDKTAKIWDLE 493 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc-------cccceeeeccc
Confidence 55533 3333 477899999876322 1121 45788999999999999987 57899999998
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEE
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~ 573 (721)
. . .....|..|...+..+.|+|..+.++..+. +..|.+|.+++.+. ++.+..+...+....|-.+|++|+
T Consensus 494 ~-~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg---D~TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 494 Q-L----RLLGVLSGHTRGVWCVSFSKNDQLLATCSG---DKTVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred C-c----eEEEEeeCCccceEEEEeccccceeEeccC---CceEEEEEecccee--eeeecCccceeEeeeeeeCCcEEE
Confidence 3 3 266788888888999999999999998887 88999999999987 888888888888899999999999
Q ss_pred EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.+..++ -|.+|++.++++..-... |...++.++-+|++..++..+.++
T Consensus 564 S~~adG-------liKlWnikt~eC~~tlD~-H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 564 SAGADG-------LIKLWNIKTNECEMTLDA-HNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eccCCC-------cEEEEeccchhhhhhhhh-ccceeEEEeecCccceeEecCCCe
Confidence 999886 899999999988766554 888899999999999776655554
No 63
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.62 E-value=8.4e-15 Score=154.33 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=153.3
Q ss_pred CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
.+....|+||.++|+..+ +..+.+|.+.+.....+. ...+..+.|+|-|-++|.++ .+...++|..+..
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas-------~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS-------HDQTARLWSTDHN 525 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC-------CCceeeeeecccC
Confidence 345679999999998885 689999999988877776 34567889999998888775 6788899998874
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
. ..+.+..+-..+....|+|+..+++..+. +..+.+||+.+|.. ++..+.+...+..++|||+|++|+.+
T Consensus 526 ~-----PlRifaghlsDV~cv~FHPNs~Y~aTGSs---D~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 526 K-----PLRIFAGHLSDVDCVSFHPNSNYVATGSS---DRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred C-----chhhhcccccccceEEECCcccccccCCC---CceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeec
Confidence 3 44555555566677999999999998876 88999999999985 66667778889999999999999999
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+.++ .|.+||+.+++....... |.+.+.++.||.||..|+..+.+..
T Consensus 596 ~ed~-------~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 596 DEDG-------LIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred ccCC-------cEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCe
Confidence 9886 899999999876655443 7788899999999999998887763
No 64
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.62 E-value=8.3e-14 Score=150.54 Aligned_cols=271 Identities=16% Similarity=0.131 Sum_probs=193.4
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+....||| ||++++... .+..+.+|+..+.+...+....++...+..++|||||++|+....+..
T Consensus 161 sv~~~~fs~-~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~t-------- 226 (456)
T KOG0266|consen 161 SVTCVDFSP-DGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKT-------- 226 (456)
T ss_pred ceEEEEEcC-CCCeEEEcc-----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCce--------
Confidence 345578999 999987754 334488888866552233333566777899999999998887766555
Q ss_pred eeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEE
Q 004971 401 QLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 401 ~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~ 473 (721)
+.++++..... .+..........+|+|+|+.++.. .+..+++||+.+++..... .+.+..++|++||+.|+.
T Consensus 227 -iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 227 -LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred -EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 55555532211 122222334567999999777777 4889999999998765443 567889999999999998
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
.+ .++.+.||++..... .....+..... ......|+|+|++|+.... +..+.+||+..+.. +.
T Consensus 306 ~s-------~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---d~~~~~w~l~~~~~--~~ 370 (456)
T KOG0266|consen 306 AS-------YDGTIRVWDLETGSK---LCLKLLSGAENSAPVTSVQFSPNGKYLLSASL---DRTLKLWDLRSGKS--VG 370 (456)
T ss_pred cC-------CCccEEEEECCCCce---eeeecccCCCCCCceeEEEECCCCcEEEEecC---CCeEEEEEccCCcc--ee
Confidence 85 478999999876431 00233444332 3677899999999999987 78999999998764 44
Q ss_pred ECcCCCc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEe
Q 004971 552 RLTEGPW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 552 ~l~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~ 627 (721)
....+.. ....+..+++|++|+.+..+. .|++|++.++........ + ...+..+.|+|....++..+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~-------~v~~~~~~s~~~~~~l~~-h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG-------SVYVWDSSSGGILQRLEG-HSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCc-------eEEEEeCCccchhhhhcC-CCCCceeccccCCCcCeeeecCc
Confidence 4444332 234556689999999999885 899999998765554432 5 566788999999999888774
Q ss_pred cC
Q 004971 628 YG 629 (721)
Q Consensus 628 ~~ 629 (721)
..
T Consensus 443 ~~ 444 (456)
T KOG0266|consen 443 EG 444 (456)
T ss_pred CC
Confidence 43
No 65
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.3e-12 Score=136.53 Aligned_cols=283 Identities=16% Similarity=0.178 Sum_probs=168.5
Q ss_pred eEEEEE--CCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce---ecc---c
Q 004971 348 HIELFD--LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---LFR---F 419 (721)
Q Consensus 348 ~l~l~d--l~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~---~ 419 (721)
.|++++ .++++...+... ........++++|+++.|+......... ..+....+......+. ... .
T Consensus 14 gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~-----g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDS-----GGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTT-----TEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCC-----CCEEEEEECCCcceeEEeeeeccCCC
Confidence 355554 477776555432 2345566789999999999877653010 3344444433211222 122 1
Q ss_pred CCCCceeCcCCCEEEEEe--CCcEEEEECCC-CceEEE---e-------------ecCceeeEEcCCCCeEEEEecCCCC
Q 004971 420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDG-SNRRQV---Y-------------FKNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~-g~~~~l---~-------------~~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
...+++++|||++|+.+. .+.+.+++++. |..... . ......+.++|||+++++...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl---- 163 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL---- 163 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----
Confidence 223468899999999884 78899999875 543322 1 012347899999999998763
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--- 556 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--- 556 (721)
....+.+|.++..... ......+.. ......+++|+|||+++++..+.++.-.++.++..++..+.+..+...
T Consensus 164 --G~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 164 --GADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp --TTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred --CCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 4567888888765520 001122222 224678899999999999988764444555555446654333332211
Q ss_pred ---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec--CCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971 557 ---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP--NGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 557 ---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
......+.+||||++|+++.... . .|.++++ .+|+++.+..... .....+++++|||++|+.+...++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~----~--sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGS----N--SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTT----T--EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred ccccCCceeEEEecCCCEEEEEeccC----C--EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 11346789999999988877653 2 5666665 5566655433222 334688999999999998877665
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.- .+|.+|.++|.++.+..
T Consensus 315 ~v--------------~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 315 TV--------------SVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EE--------------EEEEEETTTTEEEEEEE
T ss_pred eE--------------EEEEEeCCCCcEEEecc
Confidence 31 35566777888776654
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.8e-12 Score=135.41 Aligned_cols=261 Identities=16% Similarity=0.213 Sum_probs=160.3
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEEC--CCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDL--VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl--~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
......++++| ++++|+...... .....|..|.+ ++++...+............++++|++++|+.+...++
T Consensus 36 ~~~Ps~l~~~~-~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g---- 109 (345)
T PF10282_consen 36 GENPSWLAVSP-DGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGG---- 109 (345)
T ss_dssp SSSECCEEE-T-TSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTT----
T ss_pred CCCCceEEEEe-CCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCC----
Confidence 33556788999 999887764432 13344555554 44676666554333555667899999999998776544
Q ss_pred CCcceeEEEeccCC--CCcc---ee-----------cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc--eEE---
Q 004971 397 DGNNQLLLENIKSP--LPDI---SL-----------FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN--RRQ--- 453 (721)
Q Consensus 397 ~~~~~l~~~~~~~~--~~~~---~~-----------~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~--~~~--- 453 (721)
.+.+.++... .... .. .......+.++|||+++++. +...|++++++... ...
T Consensus 110 ----~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 110 ----SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp ----EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred ----eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 3444444332 1111 00 01112246889999999887 46789999987654 332
Q ss_pred Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--C----CCCcceEEccCCCE
Q 004971 454 VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--G----KNNAFPSVSPDGKW 524 (721)
Q Consensus 454 l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~----~~~~~~~~SpDg~~ 524 (721)
+. ....+++.|+|||+++++... ..+.+.++.++...+ .......+... . .....+++||||++
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e------~s~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNE------LSNTVSVFDYDPSDG-SLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEET------TTTEEEEEEEETTTT-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred cccccCCCCcEEEEcCCcCEEEEecC------CCCcEEEEeecccCC-ceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 22 346789999999999999873 578889998884332 01112222221 1 13456799999999
Q ss_pred EEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 525 IVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
|++.... ...|.++++ .+|+.+.+..+.........++++|||++|+++.... +.-.+|.+|.++|.+..+.
T Consensus 259 lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s----~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 259 LYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS----NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEECT--TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEEEEE
T ss_pred EEEEecc--CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC----CeEEEEEEeCCCCcEEEec
Confidence 8877654 345555555 5677544444444333357899999999999988763 5567777787888776654
No 67
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-11 Score=128.46 Aligned_cols=391 Identities=15% Similarity=0.135 Sum_probs=223.3
Q ss_pred eEEEEeCCCcceE-eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeE--EEe-ccCC--
Q 004971 197 AVYSTELKTGLTR-RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV--KIV-ENGG-- 270 (721)
Q Consensus 197 ~l~~v~~~~g~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~--l~~-~~~~-- 270 (721)
.|--+|+.+++.. .+...++.....+.+|.++.++...++ +-++.+....++.+- +.. ..+.
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd------------Gvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD------------GVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC------------ceEEEEecCCceEEEEeecccccceEE
Confidence 6667777666554 444556666666888888888885432 346666555544221 111 1122
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--------CCCcccCceeecCCCCEEEEEEecC
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--------PGLHAFTPATSPGNNKFIAVATRRP 342 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~sp~dG~~la~~~~~~ 342 (721)
...|.+++.-++ ....||.+.+|++.... ....++. ...-+.++.+-. |+. |+.
T Consensus 159 slsw~~~~~~i~--~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~t-I~s----- 220 (691)
T KOG2048|consen 159 SLSWNPTGTKIA--GGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLR-DST-IAS----- 220 (691)
T ss_pred EEEecCCccEEE--ecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEee-cCc-EEE-----
Confidence 458999987445 23447889999654433 2221111 111233444444 553 443
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcceeEEEeccC--CC---Ccc-
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQLLLENIKS--PL---PDI- 414 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~l~~~~~~~--~~---~~~- 414 (721)
|...+.+..||.+.+.. +.....+..++..++.++++.+++.+..++... ...+...-|+..... +. +.+
T Consensus 221 gDS~G~V~FWd~~~gTL--iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTL--IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred ecCCceEEEEcccCcch--hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 23455699999999874 333455678888889999888887766555421 000000001111100 00 000
Q ss_pred -------------eec--c--c----CCCCc---------eeCcCCCEEEEEeCCcEEEEECCCC------ceE---EEe
Q 004971 415 -------------SLF--R--F----DGSFP---------SFSPKGDRIAFVEFPGVYVVNSDGS------NRR---QVY 455 (721)
Q Consensus 415 -------------~~~--~--~----~~~~~---------~~SpDG~~la~~~~~~l~v~d~~~g------~~~---~l~ 455 (721)
+.. . . ....+ ..+|..+.+.+.....+.+|.+.+. ... .+.
T Consensus 299 v~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~ 378 (691)
T KOG2048|consen 299 VIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF 378 (691)
T ss_pred eecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeee
Confidence 000 0 0 00001 1122221112222334444544333 111 222
Q ss_pred ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEE
Q 004971 456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRS 529 (721)
Q Consensus 456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s 529 (721)
...+...+.||||++|++.+ -....||++..+.. ..++.+.... .......|+-|+..+++.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st--------~~~~~iy~L~~~~~---vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAIST--------VSRTKIYRLQPDPN---VKVINVDDVPLALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEee--------ccceEEEEeccCcc---eeEEEeccchhhhccceeeEEEecCceEEEEe
Confidence 45677889999999999986 35678888876543 2333333322 2445678999999998888
Q ss_pred eeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC
Q 004971 530 TRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 607 (721)
.. ...|..+++++...+.+..+... ...+..++.||||++|+..+..+ .|++|++.+++...+... ..
T Consensus 448 ~~--~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-------~I~v~nl~~~~~~~l~~r-ln 517 (691)
T KOG2048|consen 448 KN--IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-------QIFVYNLETLESHLLKVR-LN 517 (691)
T ss_pred cc--cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-------eEEEEEcccceeecchhc-cC
Confidence 32 56788888887664444444332 33467899999999999999775 899999999887766532 34
Q ss_pred CCcCCeEECCC-CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 608 GRANHPYFSPD-GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 608 ~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
..+...+++|. -..|+.+..++ ++|-+|+...+
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~n-----------------Qv~efdi~~~~ 551 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNN-----------------QVFEFDIEARN 551 (691)
T ss_pred cceeeeeccccccCcEEEEecCC-----------------eEEEEecchhh
Confidence 56777888854 45566655543 58888884433
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.58 E-value=4.9e-13 Score=128.78 Aligned_cols=303 Identities=11% Similarity=0.056 Sum_probs=208.9
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
...+..|...+..++.+| +.++++. |+.+..-++|+..+|+ .+....+|...+....||.||.+|+.....+
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aT-----GGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVAT-----GGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEe-----cCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 344555666778889999 8887776 4455557999999998 5556677888999999999999998865555
Q ss_pred CCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971 392 GSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWD 465 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~s 465 (721)
. +.+....++....... -....-+.|+|-+..|++. .++.+|+|.+..+...++. ...+..-.|.
T Consensus 129 ~---------v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 129 K---------VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred c---------EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 4 3444444433222221 1222346889988877776 4889999999886555555 3456678899
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
|||++++... .++.+.+|...... ...+++... .......++-++..++-.+. ....++.+..+
T Consensus 200 pdGKr~~tgy-------~dgti~~Wn~ktg~-----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~---e~~~~~~~~~s 264 (399)
T KOG0296|consen 200 PDGKRILTGY-------DDGTIIVWNPKTGQ-----PLHKITQAEGLELPCISLNLAGSTLTKGNS---EGVACGVNNGS 264 (399)
T ss_pred CCCceEEEEe-------cCceEEEEecCCCc-----eeEEecccccCcCCccccccccceeEeccC---CccEEEEcccc
Confidence 9999999886 57899999987653 555565433 22333566666665443333 44566666666
Q ss_pred CcccceEECcC---------C---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971 545 GEGYGLHRLTE---------G---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612 (721)
Q Consensus 545 g~~~~~~~l~~---------~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 612 (721)
|+ +..... . ...+..+.||.+=...|+++-++ +|.+||.+..++|.... +...+..
T Consensus 265 gK---Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG-------~i~iyD~a~~~~R~~c~--he~~V~~ 332 (399)
T KOG0296|consen 265 GK---VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG-------TIAIYDLAASTLRHICE--HEDGVTK 332 (399)
T ss_pred ce---EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc-------eEEEEecccchhheecc--CCCceEE
Confidence 65 222222 1 11234455666655566666665 89999999998887765 6677889
Q ss_pred eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCceecCC
Q 004971 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~sp~ 676 (721)
+.|-+ -.+|+....++ .|++||..+|+.+ ..+.|...+...+.+|+
T Consensus 333 l~w~~-t~~l~t~c~~g-----------------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANG-----------------KVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred EEEcC-cchheeeccCc-----------------eEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 99998 56777666554 3999999998875 77888888888899985
No 69
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.58 E-value=1.4e-14 Score=141.11 Aligned_cols=266 Identities=12% Similarity=0.064 Sum_probs=195.3
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS 449 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g 449 (721)
.+..+.|.|+|++|+..+..+. ..+|-...-.-+.-+......++.+.||++|.+++... ++-|.+|+..-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGE-------FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGE-------FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ceeeEEEcCCCceeEeeccccc-------EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3556899999999999887776 33442211000111222344566789999999998885 677889988766
Q ss_pred ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971 450 NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526 (721)
Q Consensus 450 ~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~ 526 (721)
..+.+. ...++.++|||....++.++ +++.+.||+..... +.+.|..+...+..+.|+|.-..|+
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~~k-----ee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRMPK-----EERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEEEeccCCc-----hhheeccCCCCcceeccCCccceeE
Confidence 555444 46789999999888888876 68999999987654 5677888888899999999987777
Q ss_pred EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 606 (721)
..+. +.-+.+||..+|+. +..+..+...+..+.|+|+|.+|+..+.+. .+.++|+.+-+...... +|
T Consensus 239 sgsk---DnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~-------~~kv~DiR~mkEl~~~r-~H 305 (464)
T KOG0284|consen 239 SGSK---DNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-------SCKVFDIRTMKELFTYR-GH 305 (464)
T ss_pred EccC---CceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCc-------eEEEEehhHhHHHHHhh-cc
Confidence 7665 55899999999987 777777778889999999999999999885 89999998544333333 26
Q ss_pred CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec-cCCCCCCCceecCC--cCCccc
Q 004971 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT-QNSFEDGTPAWGPR--FIRPVD 682 (721)
Q Consensus 607 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt-~~~~~~~~~~~sp~--~l~~~~ 682 (721)
...+..+.|+|=-.-|+.+...++ .|+.|.+...+.. .+. .|...+++.+|.|. +|+.++
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dg----------------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDG----------------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred hhhheeeccccccccceeeccCCC----------------ceEEEeccccccccCCCcccccceeeeeccccceeEeecC
Confidence 778889999998877766655443 3777776644433 232 26677889999995 566665
Q ss_pred cc
Q 004971 683 VE 684 (721)
Q Consensus 683 ~~ 684 (721)
-+
T Consensus 370 nd 371 (464)
T KOG0284|consen 370 ND 371 (464)
T ss_pred CC
Confidence 54
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.58 E-value=2.9e-12 Score=123.55 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=206.8
Q ss_pred EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCcee-EEEeccCC--cceeccCCeEEEEec
Q 004971 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR-VKIVENGG--WPCWVDESTLFFHRK 285 (721)
Q Consensus 209 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~--~~~ws~dg~l~~~~~ 285 (721)
.-+..|....+..+.+|+-+++|...- ...-|+|+..+|+.. .++.++.. ...|+.||.+++ .
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGg------------DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLA--T 123 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGG------------DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLA--T 123 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCC------------CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEE--e
Confidence 344566666777788997777776432 346788898888833 33344443 458999999888 4
Q ss_pred cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971 286 SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF 365 (721)
Q Consensus 286 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~ 365 (721)
.+.+|.+.||.+.... ....+......+..+.|.| -+..+++ |..+..+|.|.+.++...++.
T Consensus 124 GdmsG~v~v~~~stg~---------~~~~~~~e~~dieWl~WHp-~a~illA-----G~~DGsvWmw~ip~~~~~kv~-- 186 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGG---------EQWKLDQEVEDIEWLKWHP-RAHILLA-----GSTDGSVWMWQIPSQALCKVM-- 186 (399)
T ss_pred cCCCccEEEEEcccCc---------eEEEeecccCceEEEEecc-cccEEEe-----ecCCCcEEEEECCCcceeeEe--
Confidence 6668999999553332 3344433444567889999 9987776 445667999999886544443
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccC---CCCceeCcCCCEEEEE-eCCcE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD---GSFPSFSPKGDRIAFV-EFPGV 441 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~SpDG~~la~~-~~~~l 441 (721)
.++......-.|.|||++++....++. +.+++++++.......... ...+.++.+|..+.-. ....+
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgt---------i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGT---------IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCce---------EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 556777778899999999998766554 5666666553222211111 1123455556544433 35556
Q ss_pred EEEECCCCceEEEee--------------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 442 YVVNSDGSNRRQVYF--------------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 442 ~v~d~~~g~~~~l~~--------------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
++.+..+|+...... ..+..+.||.+=...|..+ -++++.||++... .++.+-
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-------vdG~i~iyD~a~~------~~R~~c 324 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-------VDGTIAIYDLAAS------TLRHIC 324 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-------ccceEEEEecccc------hhheec
Confidence 666666655443331 1222344444444444433 5789999988764 455566
Q ss_pred cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.+...+..+.|-+ ..+|+.... +..|+.||..+|.. ....+.+...+..++++||++.++..+.+.
T Consensus 325 ~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l--~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQL--KFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred cCCCceEEEEEcC-cchheeecc---CceEEeeeccccce--EEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 6666788899998 677887776 78999999999996 667778888889999999999998888774
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.57 E-value=5.7e-13 Score=125.11 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=196.8
Q ss_pred EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+..+...+..+.|+| +|..++. ++.+..|++|+.... ........+|.+.+..+.|.+|+..|+.++.+..
T Consensus 42 ~l~gh~geI~~~~F~P-~gs~~aS-----gG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~- 113 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHP-DGSCFAS-----GGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT- 113 (338)
T ss_pred hcCCCcceEEEEEECC-CCCeEee-----cCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCce-
Confidence 3455666788899999 9998887 557788999997543 3333444577888999999999999998776655
Q ss_pred CCCCCcceeEEEeccCCCCcceecccCC---CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcC
Q 004971 394 TREDGNNQLLLENIKSPLPDISLFRFDG---SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDP 466 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp 466 (721)
+..+|..++... ....... ..+.-+.-|..++.. .++.+.+||+...+..+.. ....+.+.|..
T Consensus 114 --------v~~wD~~tG~~~-rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 114 --------VRGWDAETGKRI-RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD 184 (338)
T ss_pred --------EEEEecccceee-ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence 556666555221 1111111 112233335555555 3788999999887765555 55678899999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
++..+.... -++.+++|++..+. ....+..+...+.++..||+|.++...+. +..+.+||..--.
T Consensus 185 ~s~qv~sgg-------Idn~ikvWd~r~~d-----~~~~lsGh~DtIt~lsls~~gs~llsnsM---d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 185 TSDQVISGG-------IDNDIKVWDLRKND-----GLYTLSGHADTITGLSLSRYGSFLLSNSM---DNTVRVWDVRPFA 249 (338)
T ss_pred cccceeecc-------ccCceeeeccccCc-----ceEEeecccCceeeEEeccCCCccccccc---cceEEEEEecccC
Confidence 998887764 46889999986554 55677777788999999999999998887 7899999986432
Q ss_pred ccce-EECcCC---CcC--ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 547 GYGL-HRLTEG---PWS--DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 547 ~~~~-~~l~~~---~~~--~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
+.+. ..+..+ ... .-..+|||+++.+-+++.+. .+|+||..+....-. .+++.+.+..+.|.|...
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-------~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-------FVYVWDTTSRRILYK-LPGHYGSVNEVDFHPTEP 321 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-------eEEEeecccccEEEE-cCCcceeEEEeeecCCCc
Confidence 2111 223222 121 23568999999999888875 899999877543322 235888999999999999
Q ss_pred EEEEEEecCC
Q 004971 621 SIVFTSDYGG 630 (721)
Q Consensus 621 ~l~~~~~~~~ 630 (721)
.|...+.+.+
T Consensus 322 iils~~sdk~ 331 (338)
T KOG0265|consen 322 IILSCSSDKT 331 (338)
T ss_pred EEEEeccCce
Confidence 9888887764
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.1e-12 Score=120.05 Aligned_cols=265 Identities=16% Similarity=0.164 Sum_probs=176.5
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEE---eCCcEEE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFV---EFPGVYV 443 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~---~~~~l~v 443 (721)
...+..+.|+++|..++..+.++. +.+++...+. ..+...........|......+.+. .+..|..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDs---------l~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDS---------LRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCe---------EEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 455677899999999998666555 4445544432 2222223334445665445555555 2678999
Q ss_pred EECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 444 VNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 444 ~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
+++.+.+..+.+ ...+..+..+|-+..++.++ .+..+++|++.... ..-.+... ...-++|.|
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S-------~D~tvrLWDlR~~~-----cqg~l~~~--~~pi~AfDp 150 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS-------LDKTVRLWDLRVKK-----CQGLLNLS--GRPIAAFDP 150 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecc-------cCCeEEeeEecCCC-----CceEEecC--CCcceeECC
Confidence 999888876666 44678899999988777765 57899999998654 22222222 234579999
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceE--ECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH--RLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~--~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
.|-.+|.+.. ...|.++|+..-...+.. .+. ........+.|||||+.|+.+.... .++++|.=.|.
T Consensus 151 ~GLifA~~~~---~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------~~~~lDAf~G~ 220 (311)
T KOG1446|consen 151 EGLIFALANG---SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------FIYLLDAFDGT 220 (311)
T ss_pred CCcEEEEecC---CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-------cEEEEEccCCc
Confidence 9988887775 348888888643211122 223 1233457899999999999999875 89999998887
Q ss_pred eEEeeecC-CCC-CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eecc-CCCCCCCcee
Q 004971 598 LRKLIQSG-SAG-RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQ-NSFEDGTPAW 673 (721)
Q Consensus 598 ~~~l~~~~-~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~-~~~~~~~~~~ 673 (721)
...-.... ... ..-...|+|||++|+..+.++ .|++|++++++.. .+.. +.+....+.|
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-----------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG-----------------TIHVWNLETGKKVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCC-----------------cEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence 54433211 111 124678999999988777665 3999999888655 4444 3566777889
Q ss_pred cCCcCCcccc
Q 004971 674 GPRFIRPVDV 683 (721)
Q Consensus 674 sp~~l~~~~~ 683 (721)
.|...++++.
T Consensus 284 nP~~~mf~sa 293 (311)
T KOG1446|consen 284 NPRYAMFVSA 293 (311)
T ss_pred CCceeeeeec
Confidence 9976555543
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=1.3e-12 Score=120.45 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=177.9
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|.-||+-+.. ..-+....+|.+....-. ......++...+..++|+|...+.++.++ .+..|.
T Consensus 25 Sv~wn~~g~~las--gs~dktv~v~n~e~~r~~-------~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir 90 (313)
T KOG1407|consen 25 SVAWNCDGTKLAS--GSFDKTVSVWNLERDRFR-------KELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIR 90 (313)
T ss_pred EEEEcccCceeee--cccCCceEEEEecchhhh-------hhhcccCCCcchhhheeCCCCCcceEEec-----CCceEE
Confidence 4589989876553 222677778865443211 11112234445678889883334454433 234599
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-CCCcceecccCCCCceeCcC
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPK 429 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~SpD 429 (721)
+||..+++....... .+......|||+|+++++...++. +...+.+. ....-...........|+.+
T Consensus 91 ~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~---------it~id~r~~~~~~~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 91 IWDIRSGKCTARIET---KGENINITWSPDGEYIAVGNKDDR---------ITFIDARTYKIVNEEQFKFEVNEISWNNS 158 (313)
T ss_pred EEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEecCccc---------EEEEEecccceeehhcccceeeeeeecCC
Confidence 999999986554432 334456899999999998765554 33333322 21122223334455788866
Q ss_pred CCEEEEE-eCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 430 GDRIAFV-EFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 430 G~~la~~-~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
+..+... +.+.|.++....-++. .|. +.....+.|+|+|+++|+.+ .+.-+.||+++.- ..++.
T Consensus 159 nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-------ADAlvSLWD~~EL-----iC~R~ 226 (313)
T KOG1407|consen 159 NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-------ADALVSLWDVDEL-----ICERC 226 (313)
T ss_pred CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-------ccceeeccChhHh-----hhhee
Confidence 6544444 3577887776544432 233 55677899999999999986 5788999998743 36788
Q ss_pred cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
++..+..+..+.||-||++|+.+++ +.-|=+.++++|.. +.++.. .+....++|.|..-.|||+..+.
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSE---Dh~IDIA~vetGd~--~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASE---DHFIDIAEVETGDR--VWEIPC-EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccccCceEEEEeccCcceeeccCc---cceEEeEecccCCe--EEEeec-cCCceeEEecCCCceeeEEecCC
Confidence 8888999999999999999999997 77788888999885 555553 33447899999999999999875
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.2e-13 Score=133.70 Aligned_cols=276 Identities=12% Similarity=0.115 Sum_probs=183.0
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
..+..+.|.| .-..+..+. -++.+.+|.++......+....-....+....|.|+|...++.+.+..
T Consensus 214 ~~I~sv~FHp-~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk------- 280 (514)
T KOG2055|consen 214 GGITSVQFHP-TAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK------- 280 (514)
T ss_pred CCceEEEecC-CCceEEEec-----CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce-------
Confidence 3567889999 776665532 334466666654332233322222455677899999995555444332
Q ss_pred ceeEEEeccCC-CCcceecc----cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971 400 NQLLLENIKSP-LPDISLFR----FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV 471 (721)
Q Consensus 400 ~~l~~~~~~~~-~~~~~~~~----~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l 471 (721)
-+|.+++... ...+.... .....+.+|+|++.|++.+ .+.|+++...+++...-. .+.+..+.|+.||+.|
T Consensus 281 -y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 281 -YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred -EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 2677777543 22222111 1234578899999999985 788999998888743322 6888999999999999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC----CCc
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE----GGE 546 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~----~g~ 546 (721)
+.++ ..+++.+|++.... ...++...+ .....++.|++|++||+.++ ..-+-+||.+ +..
T Consensus 360 ~~~~-------~~GeV~v~nl~~~~-----~~~rf~D~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 360 LASG-------GTGEVYVWNLRQNS-----CLHRFVDDGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEEc-------CCceEEEEecCCcc-----eEEEEeecCccceeeeeecCCCceEEeccC---cceEEEeccchhhccCC
Confidence 8875 46777777776653 556666544 34456889999999999986 4555566643 334
Q ss_pred ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEE
Q 004971 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~ 624 (721)
+++++.+..-...+..+.|+||++.|+.++.. ....+.++.+.+-.+..-.+. ..-+.+.+++|||.|.++++
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-----~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRV-----KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhc-----cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 34455555555667899999999999998875 334788888876543332221 12345678999999999998
Q ss_pred EEecC
Q 004971 625 TSDYG 629 (721)
Q Consensus 625 ~~~~~ 629 (721)
....+
T Consensus 500 GNe~g 504 (514)
T KOG2055|consen 500 GNEAG 504 (514)
T ss_pred ecCCC
Confidence 66554
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.54 E-value=6.4e-13 Score=145.18 Aligned_cols=280 Identities=15% Similarity=0.037 Sum_probs=179.4
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC----------ceEEeecccCCCCcccCcEEcCCCCEEEEEE
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN----------KFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg----------~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~ 388 (721)
+..+..+.++| ||..++...+. .+..+.+|+.+.= -...+.....|.+.+.++.|||||++|+..+
T Consensus 13 ~~~IfSIdv~p-dg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 13 EKSIFSIDVHP-DGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CeeEEEEEecC-CceeEecCCcc---ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 33467888999 99887763211 2333557765421 0123334445677788899999999999987
Q ss_pred eeCCCCCCCCcceeEEEec------c---CCCC---------cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971 389 CRGGSTREDGNNQLLLENI------K---SPLP---------DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS 449 (721)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~------~---~~~~---------~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g 449 (721)
++.- ..+|-... . ++.. .+.....+...+.||||+++++.++ +..|.+|+..+.
T Consensus 89 DD~~-------v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 89 DDRL-------VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred Ccce-------EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 7655 23343331 0 0110 0111233445689999999999985 889999999877
Q ss_pred ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC------CCCcceEEcc
Q 004971 450 NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG------KNNAFPSVSP 520 (721)
Q Consensus 450 ~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Sp 520 (721)
+...+. ...+..+.|.|-|+++|..+ +|..+.||+...-+ ..+.++..- .....+.|||
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqs-------dDrtikvwrt~dw~-----i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIGKYFASQS-------DDRTLKVWRTSDWG-----IEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eeeeeeecccccccceEECCccCeeeeec-------CCceEEEEEcccce-----eeEeeccchhhCCCcceeeecccCC
Confidence 644333 45677899999999999987 68899999965422 445555432 2345689999
Q ss_pred CCCEEEEEEee-CCceeEEEEECCCCcccceEECcCCCcCceeeEEcc--------CCC---------EEEEEEccCCCC
Q 004971 521 DGKWIVFRSTR-TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP--------DGE---------WIAFASDRDNPG 582 (721)
Q Consensus 521 Dg~~l~~~s~~-~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp--------DG~---------~l~~~~~~~~~~ 582 (721)
||++|+....- .+...+-+++-.+-+. -..+..|...+.-+.|+| +|. -+|.++.+
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD---- 303 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD---- 303 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC----
Confidence 99999987543 3455777777655442 334445555555666765 221 12223333
Q ss_pred CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 583 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
..|-+|.....++.-+...-....+.+++|||||-.|+..+.+++
T Consensus 304 ---rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 304 ---RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred ---ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 489999864443333322224456788999999999999898875
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=4.6e-11 Score=125.30 Aligned_cols=270 Identities=15% Similarity=0.065 Sum_probs=189.3
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
.+|...+..+++|. |...++. .. ...|.+|+..+.+...- .. ...+....|-|.+++|+.....+.
T Consensus 370 ~GHR~dVRsl~vS~-d~~~~~S--ga----~~SikiWn~~t~kciRT--i~--~~y~l~~~Fvpgd~~Iv~G~k~Ge--- 435 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSS-DSILLAS--GA----GESIKIWNRDTLKCIRT--IT--CGYILASKFVPGDRYIVLGTKNGE--- 435 (888)
T ss_pred ccchhheeEEEeec-Cceeeee--cC----CCcEEEEEccCcceeEE--ec--cccEEEEEecCCCceEEEeccCCc---
Confidence 34556788899987 6644433 22 23499999998874332 22 235667788898988887654443
Q ss_pred CCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECC-----CCce---------EEEe-ec
Q 004971 396 EDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD-----GSNR---------RQVY-FK 457 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~-----~g~~---------~~l~-~~ 457 (721)
+-+.++.+. ...+.........++.+||++..+..+ +..+..||.. .|.. +.|. ..
T Consensus 436 ------l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 436 ------LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred ------eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 455555443 222232333345578899999988885 6677777753 1222 2233 56
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
.+..+.+||||++|++.- -+.++.||-++.-. -.-.|-.|.-.+..+.+|||++.|+..+. +..+
T Consensus 510 dvL~v~~Spdgk~LaVsL-------LdnTVkVyflDtlK-----FflsLYGHkLPV~smDIS~DSklivTgSA---DKnV 574 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSL-------LDNTVKVYFLDTLK-----FFLSLYGHKLPVLSMDISPDSKLIVTGSA---DKNV 574 (888)
T ss_pred cEEEEEEcCCCcEEEEEe-------ccCeEEEEEeccee-----eeeeecccccceeEEeccCCcCeEEeccC---CCce
Confidence 788999999999999985 57899999998643 23345566678888999999999999887 7889
Q ss_pred EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
.+|-++=|.+ -+-+..+...+..+.|-|+. ++.|+.... ..+..||-+.=+..+... +|...++..+.+|
T Consensus 575 KiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~-~~FFt~gKD------~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 575 KIWGLDFGDC--HKSFFAHDDSVMSVQFLPKT-HLFFTCGKD------GKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSP 644 (888)
T ss_pred EEeccccchh--hhhhhcccCceeEEEEcccc-eeEEEecCc------ceEEeechhhhhhheeec-cchheeeeeEEcC
Confidence 9999887875 44566777777899999964 566666543 389999976655444443 3777889999999
Q ss_pred CCCEEEEEEecCC
Q 004971 618 DGKSIVFTSDYGG 630 (721)
Q Consensus 618 DG~~l~~~~~~~~ 630 (721)
+|.+++..+.+..
T Consensus 645 ~G~~vvs~shD~s 657 (888)
T KOG0306|consen 645 NGSFVVSSSHDKS 657 (888)
T ss_pred CCCeEEeccCCce
Confidence 9999998887664
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.52 E-value=4.9e-12 Score=147.44 Aligned_cols=274 Identities=11% Similarity=0.073 Sum_probs=178.7
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce------EEeecccCCCCcccCcEEcCC-CCEEEEEEee
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF------IELTRFVSPKTHHLNPFISPD-SSRVGYHKCR 390 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~------~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~ 390 (721)
+...+..++|+| +|++++... .+..|.+||+.+... ..+.... ....+..++|++. +..|+....+
T Consensus 482 ~~~~V~~i~fs~-dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 482 SSNLVCAIGFDR-DGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred CCCcEEEEEECC-CCCEEEEEe-----CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC
Confidence 444577889999 999888743 455699999754210 0111111 1234567888875 6677665554
Q ss_pred CCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceEE-Ee-ecCceeeEE
Q 004971 391 GGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQ-VY-FKNAFSTVW 464 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~-l~-~~~~~~~~~ 464 (721)
+. +.++++.++.. .+.........++|+| ++..|+..+ ++.|.+||+.++.... +. ...+..+.|
T Consensus 555 g~---------v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 555 GV---------VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred Ce---------EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 43 55666554321 1111222344578986 788777774 7889999998776432 22 345667788
Q ss_pred -cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 465 -DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 465 -spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
+++|..|++.+ .++.+.+|++..... ....+..+...+..+.|+ ++..|+..+. +..|.+||+.
T Consensus 626 ~~~~g~~latgs-------~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~---D~~ikiWd~~ 690 (793)
T PLN00181 626 PSESGRSLAFGS-------ADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRFV-DSSTLVSSST---DNTLKLWDLS 690 (793)
T ss_pred eCCCCCEEEEEe-------CCCeEEEEECCCCCc----cceEecCCCCCEEEEEEe-CCCEEEEEEC---CCEEEEEeCC
Confidence 45788888876 578899998864331 334555666677788897 7888888876 7789999987
Q ss_pred CCc----ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee------------ecCCC
Q 004971 544 GGE----GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI------------QSGSA 607 (721)
Q Consensus 544 ~g~----~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~------------~~~~~ 607 (721)
.+. ...+..+..+...+..+.|+|+|++|+.++.++ .|++|+.......... ...+.
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-------~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 763 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-------EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS 763 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-------EEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence 431 112455655555567889999999999998775 8999997654322110 01122
Q ss_pred CCcCCeEECCCCCEEEEEEecC
Q 004971 608 GRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..+..++|+|+|..|+..+.++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCC
Confidence 3467899999999988777655
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.52 E-value=3.2e-13 Score=134.60 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=195.4
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
.....+|.-.+..+.|.| ---+|+.. ++-+..|+||++-.. -..+..+.+|...+..+.|+.+|..+..++.+.
T Consensus 207 ~~~~~gH~kgvsai~~fp-~~~hLlLS----~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFP-KKGHLLLS----GGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eeeccCCccccchhhhcc-ceeeEEEe----cCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 444566766778889998 65566553 234566999998762 236677788888899999999999999988877
Q ss_pred CCCCCCCcceeEEEeccCCCCccee-cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971 392 GSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWD 465 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~s 465 (721)
. +-++|..++...... .......+.+.||+..+.++ .++.|..||+.+++..+-. -+.+..+.|-
T Consensus 281 ~---------lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 281 F---------LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred e---------eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 6 344555555221111 12233456889999777666 4889999999998854333 4677889999
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
++|++++.++ +++.+.||.....- ..+.+.... .....+..+|.+++++..+. ++.|+++.+..
T Consensus 352 ~~g~rFissS-------Ddks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~---dN~i~ifs~~~ 416 (503)
T KOG0282|consen 352 DEGRRFISSS-------DDKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSM---DNYIAIFSTVP 416 (503)
T ss_pred cCCceEeeec-------cCccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhcc---CceEEEEeccc
Confidence 9999999987 57899999987643 222222222 34556789999999998887 78888887543
Q ss_pred CcccceEECcCC---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971 545 GEGYGLHRLTEG---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621 (721)
Q Consensus 545 g~~~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~ 621 (721)
.-....+....+ .+....+.|||||++|+.+..++ .+++||..+-+....... +......+.|.|-...
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG-------~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG-------KVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEPS 488 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc-------cEEEeechhhhhhhcccc-CCcceEEEEecCCCcc
Confidence 211001112222 23346789999999999988886 899999988665555443 6677788999998766
Q ss_pred EEEEEecCC
Q 004971 622 IVFTSDYGG 630 (721)
Q Consensus 622 l~~~~~~~~ 630 (721)
.+.+..-.+
T Consensus 489 kvat~~w~G 497 (503)
T KOG0282|consen 489 KVATCGWDG 497 (503)
T ss_pred eeEecccCc
Confidence 555554443
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.9e-12 Score=128.29 Aligned_cols=275 Identities=14% Similarity=0.080 Sum_probs=181.7
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
...|+|...++. ....++..+||.++..... .++-+.-..+.+....|+| +|...++.+.+ ...++
T Consensus 218 sv~FHp~~plll--vaG~d~~lrifqvDGk~N~-------~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~r----rky~y 283 (514)
T KOG2055|consen 218 SVQFHPTAPLLL--VAGLDGTLRIFQVDGKVNP-------KLQSIHLEKFPIQKAEFAP-NGHSVIFTSGR----RKYLY 283 (514)
T ss_pred EEEecCCCceEE--EecCCCcEEEEEecCccCh-------hheeeeeccCccceeeecC-CCceEEEeccc----ceEEE
Confidence 347888877766 3555899999976544322 2232323355667889999 99955554433 24489
Q ss_pred EEECCCCceEEeecccCCC-CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeC
Q 004971 351 LFDLVKNKFIELTRFVSPK-THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFS 427 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~-~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~S 427 (721)
.||+.+.+..++....+.. .....+.+|||++.|++....+- |++....++. .++.. ......+.|+
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~---------I~lLhakT~e-li~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH---------IHLLHAKTKE-LITSFKIEGVVSDFTFS 353 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce---------EEeehhhhhh-hhheeeeccEEeeEEEe
Confidence 9999999888776654433 23567899999999988654443 4444433331 11222 2234567999
Q ss_pred cCCCEEEEE-eCCcEEEEECCCCceEEEe--ecC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-CCcc
Q 004971 428 PKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-DGVS 501 (721)
Q Consensus 428 pDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 501 (721)
.||+.|+.. +.++||+||+......... .+. -..++.|++|++||..+ +.+-+.||+.+.--. ..+.
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-------~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-------DSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-------CcceEEEeccchhhccCCCC
Confidence 999888777 5889999999887655544 333 35788999999999987 568889998654211 1112
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEEEEEEcc
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
.+..+..-...+..+.|+||++.|+..+.. ....|.++.+.+-.. ....+.. -+.+..++|||.|.+|+++...
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceee--eccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 223333333567889999999999888753 245788887765331 2222221 2346789999999999999877
Q ss_pred C
Q 004971 579 D 579 (721)
Q Consensus 579 ~ 579 (721)
+
T Consensus 504 g 504 (514)
T KOG2055|consen 504 G 504 (514)
T ss_pred C
Confidence 4
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=4.4e-10 Score=118.12 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=158.1
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
..|-|.+++++.. ..+.|.++|+.+.... .+. .+.+..++.+||++.++.++ .+..+.+|+...-.. .
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~-~ 489 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVS-V 489 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEec-c
Confidence 3567877777776 4778999999877643 232 67888999999999999886 688999998875432 1
Q ss_pred cc-ceEEccc-------CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971 500 VS-AVRRLTT-------NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571 (721)
Q Consensus 500 ~~-~~~~l~~-------~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~ 571 (721)
++ +.+.|.- -...+..+.+||||++|++.-- +..+.+|-+++-+. ...|..+.-.+..+..|||++.
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL---dnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL---DNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec---cCeEEEEEecceee--eeeecccccceeEEeccCCcCe
Confidence 11 2121221 1235677899999999998876 56666666666543 4567778888889999999999
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEE
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (721)
|+.++.+. .|.+|-++=|.+.+-... |...+..+.|-|+ .++.|+....+ .+..|
T Consensus 565 ivTgSADK-------nVKiWGLdFGDCHKS~fA-HdDSvm~V~F~P~-~~~FFt~gKD~----------------kvKqW 619 (888)
T KOG0306|consen 565 IVTGSADK-------NVKIWGLDFGDCHKSFFA-HDDSVMSVQFLPK-THLFFTCGKDG----------------KVKQW 619 (888)
T ss_pred EEeccCCC-------ceEEeccccchhhhhhhc-ccCceeEEEEccc-ceeEEEecCcc----------------eEEee
Confidence 99999885 899999888887776543 7788899999995 55667766654 38888
Q ss_pred EcCCC-CeEEeccCCCCCCCceecCC
Q 004971 652 KLDGS-DLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 652 d~~~~-~~~~lt~~~~~~~~~~~sp~ 676 (721)
|.+.= ..+.|..|...++..+.+|.
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred chhhhhhheeeccchheeeeeEEcCC
Confidence 86553 45677777777788888885
No 81
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.9e-11 Score=122.56 Aligned_cols=338 Identities=14% Similarity=0.147 Sum_probs=205.1
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecC------CC
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP------TS 344 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~------g~ 344 (721)
...|||-|..+++ -+...+.+|- + . .+++.+++... .+..+.||| ..++|+.-+... ..
T Consensus 215 yv~wSP~GTYL~t---~Hk~GI~lWG----G-~----~f~r~~RF~Hp--~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 215 YVRWSPKGTYLVT---FHKQGIALWG----G-E----SFDRIQRFYHP--GVQFIDFSP-NEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eEEecCCceEEEE---Eeccceeeec----C-c----cHHHHHhccCC--CceeeecCC-ccceEEEecCCccccCcccC
Confidence 4589999997663 2345677881 1 1 12344444333 356788999 999998755322 12
Q ss_pred CeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceeccc
Q 004971 345 SYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRF 419 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~ 419 (721)
+...|.+||+.+|....-... ......-.-+.||.|+++++-...+. |.+.....- .+.+. ..
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s----------isIyEtpsf~lld~Kslk--i~ 347 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS----------ISIYETPSFMLLDKKSLK--IS 347 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce----------EEEEecCceeeecccccC--Cc
Confidence 446799999999975432211 11112223468999999988654421 222221110 00111 12
Q ss_pred CCCCceeCcCCCEEEEEe------CCcEEEEECCCCceEE---EeecCceeeEEcCCCCeEEEEecCCCC---CCCCCcE
Q 004971 420 DGSFPSFSPKGDRIAFVE------FPGVYVVNSDGSNRRQ---VYFKNAFSTVWDPVREAVVYTSGGPEF---ASESSEV 487 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~------~~~l~v~d~~~g~~~~---l~~~~~~~~~~spdg~~la~~~~~~~~---~~~~~~~ 487 (721)
....+.|||-+..|||.. ...+-++.+.++...+ |..-..-.+.|-..|.+|++-.++..- ...-.+.
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 345689999999999982 3457777776655322 223333468899999999987653211 1123467
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCce--eEEEEECCCCcccceEECcCCCcCceeeEE
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCNW 565 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~--~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~ 565 (721)
.|+++....- .+..+... ..+..++|-|.|.++++.+...... +.|-+....++...+..+.. ...+.+.|
T Consensus 428 eIfrireKdI----pve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfw 500 (698)
T KOG2314|consen 428 EIFRIREKDI----PVEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFW 500 (698)
T ss_pred EEEEeeccCC----Cceeeecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEE
Confidence 7888876542 33333333 3677899999999999988655444 44544444444444455544 23478999
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
||.|++++.+.... .+..++.+|++-......-.. .......+.|.|.|+|++..+.-.....+
T Consensus 501 sPkG~fvvva~l~s----~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrhk~d----------- 564 (698)
T KOG2314|consen 501 SPKGRFVVVAALVS----RRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRHKVD----------- 564 (698)
T ss_pred cCCCcEEEEEEecc----cccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhhccc-----------
Confidence 99999999988763 456899999875333332221 23456778999999999887764432222
Q ss_pred ccEEEEEcCCCCe
Q 004971 646 GEIFKIKLDGSDL 658 (721)
Q Consensus 646 ~~l~~~d~~~~~~ 658 (721)
...++++.+|..+
T Consensus 565 ~GYri~tfqGrll 577 (698)
T KOG2314|consen 565 NGYRIFTFQGRLL 577 (698)
T ss_pred cceEEEEeecHHH
Confidence 1255667776543
No 82
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.6e-11 Score=110.90 Aligned_cols=275 Identities=12% Similarity=0.134 Sum_probs=176.1
Q ss_pred EEeCCCCCcccCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEE
Q 004971 313 QRVTPPGLHAFTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~ 388 (721)
+.+..+...+..++|+| - |..||. ++.+..|++|+..++.. +.+.. ..|...++.++|||.|++|+.++
T Consensus 8 ~~~~gh~~r~W~~awhp-~~g~ilAs-----cg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHP-GKGVILAS-----CGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred EeecCCCCcEEEEEecc-CCceEEEe-----ecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecCCCcEEEEee
Confidence 34444544677899999 6 764444 34567799999885432 22221 24667789999999999999988
Q ss_pred eeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE----e--ecC
Q 004971 389 CRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV----Y--FKN 458 (721)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l----~--~~~ 458 (721)
.+.. ..||-.. .+.-+ .+......+..++||++|.+||..+ +..+|+|.++.+..-.. . ...
T Consensus 81 FD~t-------~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 81 FDAT-------VVIWKKE-DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred ccce-------EEEeecC-CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 8776 2222211 11100 1111122345689999999999995 78899999986553322 2 456
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
+..+.|.|....|+..+ -++.+++|+-..+. .......|..+...+...+|.|.|.+|+..++ +..+.
T Consensus 153 VK~V~WHPt~dlL~S~S-------YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd---D~tv~ 220 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCS-------YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFDNIGSRLVSCSD---DGTVS 220 (312)
T ss_pred ccEEEEcCCcceeEEec-------cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEecCCCceEEEecC---CcceE
Confidence 78899999988888876 47899999877432 23456777777778889999999999998887 66677
Q ss_pred EEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC----ceEEee--ecCCCCCcC
Q 004971 539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT----GLRKLI--QSGSAGRAN 611 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~----~~~~l~--~~~~~~~~~ 611 (721)
+|-..+. ++ .+...+..++|. +| .|+....+. .|.++....+ ....+. ...|...++
T Consensus 221 Iw~~~~~-------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~-------~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 221 IWRLYTD-------LSGMHSRALYDVPWD-NG-VIASGGGDD-------AIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred eeeeccC-------cchhcccceEeeeec-cc-ceEeccCCC-------EEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 7654322 22 123344668887 44 466666553 4444433221 111111 112666889
Q ss_pred CeEECCCCCEEEEEEecCC
Q 004971 612 HPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~ 630 (721)
+++|.|.++-++++..+++
T Consensus 285 sV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred eEEEcCCCCCceeecCCCc
Confidence 9999997555555555444
No 83
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.48 E-value=1.3e-11 Score=116.06 Aligned_cols=273 Identities=13% Similarity=0.061 Sum_probs=188.4
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
.|+|||..+++ ...|..+-+|++..... ....+..+...+..+.|.+ |+..|+... .+.+++.|
T Consensus 54 ~F~P~gs~~aS--gG~Dr~I~LWnv~gdce--------N~~~lkgHsgAVM~l~~~~-d~s~i~S~g-----tDk~v~~w 117 (338)
T KOG0265|consen 54 KFHPDGSCFAS--GGSDRAIVLWNVYGDCE--------NFWVLKGHSGAVMELHGMR-DGSHILSCG-----TDKTVRGW 117 (338)
T ss_pred EECCCCCeEee--cCCcceEEEEecccccc--------ceeeeccccceeEeeeecc-CCCEEEEec-----CCceEEEE
Confidence 78999888773 44477888897665442 3444557777788999999 999887743 56679999
Q ss_pred ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCC
Q 004971 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGD 431 (721)
Q Consensus 353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~ 431 (721)
|.++|+ .+.+...+..-+..+.-+.-|..++....+.+ .+.++|.+.... ...........+.|..++.
T Consensus 118 D~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~--------t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 118 DAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG--------TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ecccce--eeehhccccceeeecCccccCCeEEEecCCCc--------eEEEEeecccchhhccccceeEEEEEeccccc
Confidence 999998 44444445544444444445666665444433 345555543211 1111123344578888888
Q ss_pred EEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 432 RIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 432 ~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
.+.... ++.|.+||+..+....+. ...+..+..||+|.++..-+ .+..+.+|++..-... ...+....
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-------Md~tvrvwd~rp~~p~-~R~v~if~ 259 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-------MDNTVRVWDVRPFAPS-QRCVKIFQ 259 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-------ccceEEEEEecccCCC-CceEEEee
Confidence 877775 789999999777655555 45788999999999987654 4788999988654320 01122222
Q ss_pred cCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971 508 TNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583 (721)
Q Consensus 508 ~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 583 (721)
.+. ......+|||+++++-+.+. +..+|+||..+... +-.++.+.+.+..+.|.|....|..++.+.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~---dr~vyvwd~~~r~~--lyklpGh~gsvn~~~Fhp~e~iils~~sdk---- 330 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSA---DRFVYVWDTTSRRI--LYKLPGHYGSVNEVDFHPTEPIILSCSSDK---- 330 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccc---cceEEEeecccccE--EEEcCCcceeEEEeeecCCCcEEEEeccCc----
Confidence 221 23455799999999999887 78999999987554 677888888899999999999988888775
Q ss_pred CceeEEEE
Q 004971 584 GSFEMYLI 591 (721)
Q Consensus 584 ~~~~i~~~ 591 (721)
.||+=
T Consensus 331 ---~i~lg 335 (338)
T KOG0265|consen 331 ---TIYLG 335 (338)
T ss_pred ---eeEee
Confidence 78864
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.48 E-value=4e-10 Score=119.87 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=78.2
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+..+.....++...+ +..|.++|..+.+. ++.+-.+...++++.|||||+||+.++.+. .|+.||+-+
T Consensus 540 iv~hr~s~l~a~~~d---df~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~-------tIr~wDlpt 607 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALD---DFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDS-------TIRTWDLPT 607 (910)
T ss_pred eeeeehhhhhhhhcC---ceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCC-------cEEEEeccC
Confidence 344444444554444 77899999988764 566666777889999999999999999986 899999999
Q ss_pred CceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 596 ~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+...-... .+....++.|||+|.+|+.+..+..
T Consensus 608 ~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 608 GTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred cceeeeEe--cCCcceeeEECCCCCEEEEEEecCc
Confidence 87765543 3455678999999999999888753
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.48 E-value=5.6e-11 Score=119.18 Aligned_cols=348 Identities=12% Similarity=0.118 Sum_probs=198.9
Q ss_pred CCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEE--eccC--C---cceeccCCeEEEEeccCC
Q 004971 216 VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI--VENG--G---WPCWVDESTLFFHRKSEE 288 (721)
Q Consensus 216 ~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~--~---~~~ws~dg~l~~~~~~~~ 288 (721)
.......|.|-+.-|...- . ...+|.|+++++...+-. .+.. . ..+|.+||.++- .+.
T Consensus 201 e~v~~a~FHPtd~nliit~-G-----------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT---gDS 265 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC-G-----------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT---GDS 265 (626)
T ss_pred ceEEEEEeccCCCcEEEEe-C-----------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe---ecC
Confidence 3345558999554444422 1 368999999888744432 2221 1 348999988766 445
Q ss_pred CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE--eeccc
Q 004971 289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE--LTRFV 366 (721)
Q Consensus 289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~--l~~~~ 366 (721)
+|.+.||...... -.+++..+...+..+.... +|..| . |+.++.|.+||-.-.+.++ +....
T Consensus 266 ~G~i~Iw~~~~~~---------~~k~~~aH~ggv~~L~~lr-~Gtll-S-----GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 266 GGNILIWSKGTNR---------ISKQVHAHDGGVFSLCMLR-DGTLL-S-----GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred CceEEEEeCCCce---------EEeEeeecCCceEEEEEec-CccEe-e-----cCccceEEeccccccccccccCchhc
Confidence 7888899542222 2233335555677777777 88643 2 4566778888832222211 11100
Q ss_pred ------------------------------------CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 367 ------------------------------------SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 367 ------------------------------------~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
.+....+.++..|+...++.+..++. +.+++ +..
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~---------v~lW~-~~k 399 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH---------VRLWN-DHK 399 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce---------EEEcc-CCc
Confidence 00111111122222222222111111 11111 000
Q ss_pred CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 411 LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 411 ~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
..-............|+|.| .||... .+...++|.++.....+. ...+..+.|+|||.+||+.+ .++.+
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-------~d~~i 471 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-------HDNHI 471 (626)
T ss_pred eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-------CCCeE
Confidence 00001112223456889999 777764 677888999887665555 55677899999999999997 68899
Q ss_pred EEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-----------
Q 004971 488 DIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----------- 555 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----------- 555 (721)
.||+++.++. ...++.... ..+.++.||+|+++|...+. +.+|..|... +.++...+..
T Consensus 472 yiy~Vs~~g~----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~---d~eiLyW~~~--~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 472 YIYRVSANGR----KYSRVGKCSGSPITHLDWSSDSQFLVSNSG---DYEILYWKPS--ECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred EEEEECCCCc----EEEEeeeecCceeEEeeecCCCceEEeccC---ceEEEEEccc--cCcccceecceeeeeeEEEEE
Confidence 9999998875 555554433 56778999999999987775 7888888433 2111111100
Q ss_pred -------CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 556 -------GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 556 -------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
....+...+-|.+.+.|+.+... +.-+||.|....-+..-..-.++...+.+++|+-+-..+..+.
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~-----g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDF-----GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccC-----ceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 01122334455566655544443 6678888887654332222224677788899998877777666
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.4e-10 Score=117.82 Aligned_cols=426 Identities=15% Similarity=0.131 Sum_probs=226.2
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec-CCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT-PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI 253 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~ 253 (721)
+.+.|+.....+ ...+|.+...=-....++ +........+|++.| +|..+. ..+.|-.
T Consensus 36 kS~~lAvsRt~g--------~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g------------~sg~i~E 94 (691)
T KOG2048|consen 36 KSNQLAVSRTDG--------NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSG------------LSGSITE 94 (691)
T ss_pred cCCceeeeccCC--------cEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeec------------CCceEEE
Confidence 556566654443 257777654322223332 223344556898544 555543 1367999
Q ss_pred EEcCCCceeEEEeccCCcceec----cCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceee
Q 004971 254 FLTRDGTQRVKIVENGGWPCWV----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATS 328 (721)
Q Consensus 254 ~d~~~g~~~~l~~~~~~~~~ws----~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 328 (721)
||+.+++.+.-....+ .+-|+ |.+..+. ...++|....+ ...++.- ....... ....+..+.|+
T Consensus 95 wDl~~lk~~~~~d~~g-g~IWsiai~p~~~~l~--IgcddGvl~~~-s~~p~~I-------~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNG-GAIWSIAINPENTILA--IGCDDGVLYDF-SIGPDKI-------TYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EecccCceeEEecCCC-cceeEEEeCCccceEE--eecCCceEEEE-ecCCceE-------EEEeecccccceEEEEEec
Confidence 9998888665543333 33344 5555544 23336633232 2222211 1111111 23456788999
Q ss_pred cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC--CCcccCcEEc----CCCCEEEEEEeeCCCCCCCCccee
Q 004971 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP--KTHHLNPFIS----PDSSRVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~--~~~~~~~~~S----pdg~~l~~~~~~~~~~~~~~~~~l 402 (721)
| +|.+|+. |..++.|.+||..++....+...... ......+.|| .|+ .|+..... ..+
T Consensus 164 ~-~~~~i~~-----Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~---------G~V 227 (691)
T KOG2048|consen 164 P-TGTKIAG-----GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA---------GTV 227 (691)
T ss_pred C-CccEEEe-----cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCC---------ceE
Confidence 9 9998887 45667799999999875442211100 1111223443 333 22221111 224
Q ss_pred EEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-------ecCceeeEEcCC-----
Q 004971 403 LLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPV----- 467 (721)
Q Consensus 403 ~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spd----- 467 (721)
.+++...+ .+.......++..++.++++.++...+ ++.+..+...++....+. ...+..++..++
T Consensus 228 ~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sg 307 (691)
T KOG2048|consen 228 TFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISG 307 (691)
T ss_pred EEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEec
Confidence 44443332 222233344555678888888877774 677777777665331111 222233333222
Q ss_pred CC--eEEEEecCC----------CC----------------CCCCCcEEEEEEEccCCC---CccceEEccc-CCCCCcc
Q 004971 468 RE--AVVYTSGGP----------EF----------------ASESSEVDIISINVDDVD---GVSAVRRLTT-NGKNNAF 515 (721)
Q Consensus 468 g~--~la~~~~~~----------~~----------------~~~~~~~~i~~~~~~~~~---~~~~~~~l~~-~~~~~~~ 515 (721)
|+ .|++...+. .+ ......+.+|++...... ....+-.+.. .......
T Consensus 308 G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~ 387 (691)
T KOG2048|consen 308 GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC 387 (691)
T ss_pred ceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence 11 111111100 00 001122334444322100 0111222222 2345667
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
.+.||||++|++..-. ...||.+..+. .. .++.+. ........+.|+-|+..+++.+.+. ..+...+
T Consensus 388 ~aiSPdg~~Ia~st~~--~~~iy~L~~~~-~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~------~~le~~e 457 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVS--RTKIYRLQPDP-NV-KVINVDDVPLALLDASAISFTIDKNKLFLVSKNI------FSLEEFE 457 (691)
T ss_pred eccCCCCCEEEEeecc--ceEEEEeccCc-ce-eEEEeccchhhhccceeeEEEecCceEEEEeccc------ceeEEEE
Confidence 7999999999998742 44677766654 21 122222 2223456789999999988888432 3777777
Q ss_pred cCCCceEEeee---cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec-cCCCCC
Q 004971 593 PNGTGLRKLIQ---SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT-QNSFED 668 (721)
Q Consensus 593 ~~~~~~~~l~~---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt-~~~~~~ 668 (721)
+.+...+.+.. ......++.++-||||.||+..+..+ .|++|++.+++.+.|. .....+
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-----------------~I~v~nl~~~~~~~l~~rln~~v 520 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-----------------QIFVYNLETLESHLLKVRLNIDV 520 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-----------------eEEEEEcccceeecchhccCcce
Confidence 77664433321 12345678899999999999988655 5999999999888776 344556
Q ss_pred CCceecC
Q 004971 669 GTPAWGP 675 (721)
Q Consensus 669 ~~~~~sp 675 (721)
++..|+|
T Consensus 521 Ta~~~~~ 527 (691)
T KOG2048|consen 521 TAAAFSP 527 (691)
T ss_pred eeeeccc
Confidence 7778886
No 87
>PTZ00421 coronin; Provisional
Probab=99.46 E-value=5.3e-11 Score=128.36 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=150.9
Q ss_pred CCCCceeCc-CCCEEEEEe-CCcEEEEECCCCce--------EEEe--ecCceeeEEcCCCC-eEEEEecCCCCCCCCCc
Q 004971 420 DGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPVRE-AVVYTSGGPEFASESSE 486 (721)
Q Consensus 420 ~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~ 486 (721)
....++|+| |++.|+..+ ++.|.+||+..+.. ..+. ...+..+.|+|++. .|+.++ .++.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs-------~Dgt 149 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG-------ADMV 149 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-------CCCE
Confidence 345679999 888888774 78999999975421 2222 45678899999875 555554 5789
Q ss_pred EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC-ceeeEE
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNW 565 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~ 565 (721)
+.||++.... ....+..+...+..++|+|||+.|+..+. +..|.+||+.+++. +..+..+... .....|
T Consensus 150 VrIWDl~tg~-----~~~~l~~h~~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 150 VNVWDVERGK-----AVEVIKCHSDQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTI--VSSVEAHASAKSQRCLW 219 (493)
T ss_pred EEEEECCCCe-----EEEEEcCCCCceEEEEEECCCCEEEEecC---CCEEEEEECCCCcE--EEEEecCCCCcceEEEE
Confidence 9999987542 45566666667888999999999998886 78899999998874 4455444332 346789
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
.+++..|+...... .....|.+||+.... +..............+.|++|++.|+..+..++
T Consensus 220 ~~~~~~ivt~G~s~---s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg-------------- 282 (493)
T PTZ00421 220 AKRKDLIITLGCSK---SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG-------------- 282 (493)
T ss_pred cCCCCeEEEEecCC---CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--------------
Confidence 99988887665331 133589999997643 222222112233455789999999888765333
Q ss_pred CccEEEEEcCCCCeEEeccCC--CCCCCceecC
Q 004971 645 YGEIFKIKLDGSDLKRLTQNS--FEDGTPAWGP 675 (721)
Q Consensus 645 ~~~l~~~d~~~~~~~~lt~~~--~~~~~~~~sp 675 (721)
.|++||+..++........ ......+|.|
T Consensus 283 --~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 283 --NIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred --eEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 4999999888776554322 2235667777
No 88
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.46 E-value=4.6e-13 Score=130.63 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=192.8
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+..+.|.| +|++|+..+ ..+.+.+|+..+-..+.+. ..|...+....||++|.+++.....+-
T Consensus 98 ~V~~v~WtP-eGRRLltgs-----~SGEFtLWNg~~fnFEtil--QaHDs~Vr~m~ws~~g~wmiSgD~gG~-------- 161 (464)
T KOG0284|consen 98 PVNVVRWTP-EGRRLLTGS-----QSGEFTLWNGTSFNFETIL--QAHDSPVRTMKWSHNGTWMISGDKGGM-------- 161 (464)
T ss_pred ceeeEEEcC-CCceeEeec-----ccccEEEecCceeeHHHHh--hhhcccceeEEEccCCCEEEEcCCCce--------
Confidence 456789999 999999854 3345889987544333333 456777899999999999887544443
Q ss_pred eeEEEeccCC-CCcce-ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEE
Q 004971 401 QLLLENIKSP-LPDIS-LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 401 ~l~~~~~~~~-~~~~~-~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~ 474 (721)
|-+++..-. .+.+. ......+.++|||+...++.+ .++.|.+||..-.+ .+.|. .-.+..+.|.|....|+..
T Consensus 162 -iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 162 -IKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred -EEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 222222111 11111 112346678999987777666 58899999986555 45555 4467899999999888887
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
+ .+.-+.+|+-.... ++..+..+...+..+.|+|++.+|+..+. +..+.++|+.+-+. +...-
T Consensus 241 s-------kDnlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~sk---D~~~kv~DiR~mkE--l~~~r 303 (464)
T KOG0284|consen 241 S-------KDNLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSK---DQSCKVFDIRTMKE--LFTYR 303 (464)
T ss_pred c-------CCceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccC---CceEEEEehhHhHH--HHHhh
Confidence 6 45678888876543 66667777778899999999999999987 78899999985332 55555
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 631 (721)
.+...+..+.|+|=-.-|+....-. ..|+.|.+...++.......|...+.+++|.|=|..|+..+++.+.
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred cchhhheeeccccccccceeeccCC------CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence 6667788999999877666655432 2677787775555555555588889999999999999887777653
No 89
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=4.1e-10 Score=114.52 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=152.5
Q ss_pred eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC--CCCCCCcceeEEEeccCCCC--cceec-----
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG--STREDGNNQLLLENIKSPLP--DISLF----- 417 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~----- 417 (721)
.+|.++|.++++....... +..... .+||||+.|+.+..--. ..+... ..+.+.|..+... .+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~---G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~-d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG---GFLPNP-VVASDGSFFAHASTVYSRIARGKRT-DYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEc---cCCCce-eECCCCCEEEEEeccccccccCCCC-CEEEEEECccCcEEeEEccCCCchh
Confidence 5699999999874332211 222223 49999999998765100 000011 3466666655421 11110
Q ss_pred --ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-ecCce--------eeEEcCCCCeEEEEecCCCCCC
Q 004971 418 --RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-FKNAF--------STVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 418 --~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~~~~~--------~~~~spdg~~la~~~~~~~~~~ 482 (721)
.......++||||++|++.. ...+.++|+.+++.. ++. .+... .+....||+.+.+..+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d------ 175 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG------ 175 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec------
Confidence 11122579999999998773 678999999988743 344 22111 2222344444433331
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc---eEECcCC
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG---LHRLTEG 556 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~---~~~l~~~ 556 (721)
.+++... ....+... ......|.|++ ||+++++.. ...|+.+|+.+.+... ...++..
T Consensus 176 ~~g~~~~------------~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR02658 176 TKGNPKI------------KPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEA 239 (352)
T ss_pred CCCceEE------------eeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeecccc
Confidence 1122110 01111111 11123346677 887666555 4789999976543211 1112211
Q ss_pred -------CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 557 -------PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 557 -------~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
+.....++++|||++|++....... ..+...|+++|+.+++...... .......+++||||+.++|..
T Consensus 240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCeEEEEe
Confidence 1122348999999999986532110 1233589999999988766554 345778999999999444444
Q ss_pred ecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEecc
Q 004971 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQ 663 (721)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~ 663 (721)
+... +.|.++|..+++. +.+..
T Consensus 318 n~~s---------------~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 318 STGD---------------KTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CCCC---------------CcEEEEECcCCeEEeeecc
Confidence 4332 1499999988755 55544
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=7.5e-12 Score=118.41 Aligned_cols=274 Identities=18% Similarity=0.170 Sum_probs=168.3
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+.||+.+.+. ..|+.+.||.+.+-.-. .-...++-.+.+ ....+.|+| |-+.+++...+. +. |+
T Consensus 91 ~~~FsSdGK~lat~--~~Dr~Ir~w~~~DF~~~----eHr~~R~nve~d-hpT~V~Fap-Dc~s~vv~~~~g--~~--l~ 158 (420)
T KOG2096|consen 91 DVAFSSDGKKLATI--SGDRSIRLWDVRDFENK----EHRCIRQNVEYD-HPTRVVFAP-DCKSVVVSVKRG--NK--LC 158 (420)
T ss_pred eeEEcCCCceeEEE--eCCceEEEEecchhhhh----hhhHhhccccCC-CceEEEECC-CcceEEEEEccC--CE--EE
Confidence 45899999876643 23799999977653211 000111111112 446788999 999888765532 22 66
Q ss_pred EEECCC---Cce--EEe-----ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-Ccceeccc
Q 004971 351 LFDLVK---NKF--IEL-----TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRF 419 (721)
Q Consensus 351 l~dl~t---g~~--~~l-----~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 419 (721)
+|-+.. |.. ..+ .....+...+.++.....+++|+.++.+.. +.++++++.. ..+..-..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~---------i~lw~lkGq~L~~idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK---------ICLWDLKGQLLQSIDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc---------EEEEecCCceeeeeccccc
Confidence 665432 211 001 011122333444556666777776665554 7777777542 12222222
Q ss_pred CCCCceeCcCCCEEEEEe-CCcEEEEECC---CCceEE---Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSD---GSNRRQ---VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~---~g~~~~---l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
.....++||||+.|+..+ ..++.+|.+- .|+.+. +. ...+..++|||+.++++.++ .++.+
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-------kDG~w 302 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-------KDGKW 302 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-------cCCcE
Confidence 345579999999999884 6778888752 333222 22 34678899999999999997 68999
Q ss_pred EEEEEEccCCC--Cccce----EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCc
Q 004971 488 DIISINVDDVD--GVSAV----RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSD 560 (721)
Q Consensus 488 ~i~~~~~~~~~--~~~~~----~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~ 560 (721)
+||+.+..-.. .+..+ ..+...+.....+..||.|+.|+... ...|.++..++|+. ...+. .+...+
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~----gs~l~~~~se~g~~--~~~~e~~h~~~I 376 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF----GSDLKVFASEDGKD--YPELEDIHSTTI 376 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec----CCceEEEEcccCcc--chhHHHhhcCce
Confidence 99998864320 00011 12222234555789999999999877 46788888887763 22222 234567
Q ss_pred eeeEEccCCCEEEEEEcc
Q 004971 561 TMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~ 578 (721)
..++|++||++++.+.++
T Consensus 377 s~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCGDR 394 (420)
T ss_pred eeEEecCCCcEEeeecce
Confidence 899999999999988876
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.4e-12 Score=129.72 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=191.2
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
.++..-+.||. .+ .++.+.. ..+++|+..+++...+.... ...+..+.|+++|+.|+.....+.
T Consensus 177 DfY~nlldWss-~n-~laValg------~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~------ 240 (484)
T KOG0305|consen 177 DFYLNLLDWSS-AN-VLAVALG------QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGT------ 240 (484)
T ss_pred cHhhhHhhccc-CC-eEEEEec------ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCe------
Confidence 34445667876 54 4555432 23999999999877776543 566888999999999999776665
Q ss_pred cceeEEEeccCC--CCccee-cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-E-Ee--ecCceeeEEcCCCCe
Q 004971 399 NNQLLLENIKSP--LPDISL-FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-Q-VY--FKNAFSTVWDPVREA 470 (721)
Q Consensus 399 ~~~l~~~~~~~~--~~~~~~-~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~-l~--~~~~~~~~~spdg~~ 470 (721)
+.+++.... ...+.. .......++|. +..+... .+..|..+|+...+.. . +. ...+-.+.|++|+++
T Consensus 241 ---v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 241 ---VQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred ---EEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence 455554433 122222 22233446776 3334333 3677888887655421 1 21 445667999999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
+|... .++.+.||+.... .....+..+...+..++|+|=.+-|+.......+..|..||..+|+. +
T Consensus 316 lASGg-------nDN~~~Iwd~~~~-----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i 381 (484)
T KOG0305|consen 316 LASGG-------NDNVVFIWDGLSP-----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--I 381 (484)
T ss_pred eccCC-------CccceEeccCCCc-----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--e
Confidence 99874 5788999988433 26778888888899999999888787777777788999999999884 4
Q ss_pred EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
..+..+ ..+..+.||+..+.|+.+.... ..+|.+|+..+-+...... +|...+-.+++||||..|+..+.+.+
T Consensus 382 ~~vdtg-sQVcsL~Wsk~~kEi~sthG~s-----~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 382 DSVDTG-SQVCSLIWSKKYKELLSTHGYS-----ENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred cccccC-CceeeEEEcCCCCEEEEecCCC-----CCcEEEEeccccceeeeec-CCcceeEEEEECCCCCEEEEecccCc
Confidence 445444 4568999999999999888753 2367777766654443333 48888999999999999999999886
No 92
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=4.7e-12 Score=122.00 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=190.9
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
...+.++...+..+.+.| +--.++.++ ++..|++||..+|+. .....++...+..++|+..|+.|+.++.+-
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as-----~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSAS-----EDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEec-----CCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCcc
Confidence 344555555666777888 665444432 445699999999985 344456667788999999999998877655
Q ss_pred CCCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEE
Q 004971 392 GSTREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVW 464 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~ 464 (721)
. +.++++..- .+.+.........+.+-|-|.+|+..+ +..|..|++++|-..... ...+..+..
T Consensus 173 ~---------~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 173 S---------AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred c---------hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 4 223333221 111112223345578889999988885 788999999999865444 557888999
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---------------CCEEEEEE
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---------------GKWIVFRS 529 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---------------g~~l~~~s 529 (721)
+.||..++..+ .+..+++|.+.... ....+..++..+.-.+|.|+ |..+...+
T Consensus 244 ~~DGti~As~s-------~dqtl~vW~~~t~~-----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 244 NQDGTIIASCS-------NDQTLRVWVVATKQ-----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred cCCeeEEEecC-------CCceEEEEEeccch-----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 99999998876 57889999987652 22333333333333333332 23444444
Q ss_pred eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 609 (721)
. +..|.+||+.+|.. +-.|..+...+..++|+|-|++|+.+.++. .|.+||+..+++.+... .+...
T Consensus 312 r---DktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDk-------tlrvwdl~~~~cmk~~~-ah~hf 378 (406)
T KOG0295|consen 312 R---DKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDK-------TLRVWDLKNLQCMKTLE-AHEHF 378 (406)
T ss_pred c---cceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCC-------cEEEEEeccceeeeccC-CCcce
Confidence 4 77899999999986 777877777789999999999999999886 89999999987766554 36777
Q ss_pred cCCeEECCCCCEEEEEEecC
Q 004971 610 ANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 610 ~~~~~~SpDG~~l~~~~~~~ 629 (721)
+..+.|..+--+++..+-+.
T Consensus 379 vt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred eEEEecCCCCceEEeccccc
Confidence 78888877766666554443
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.3e-11 Score=128.41 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=174.1
Q ss_pred ceEEeCCC-CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-CCCcccCcEEcCCCCEEEEEE
Q 004971 311 SIQRVTPP-GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-PKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 311 ~~~~~~~~-~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-~~~~~~~~~~Spdg~~l~~~~ 388 (721)
...++... ...+..+.|++ +|.+|+... .++.+.+||.++.+ .+..... +...+...+|. +..+....
T Consensus 208 ~v~~l~~~~~~~vtSv~ws~-~G~~LavG~-----~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 208 SVTELCSFGEELVTSVKWSP-DGSHLAVGT-----SDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred ceEEeEecCCCceEEEEECC-CCCEEEEee-----cCCeEEEEehhhcc--ccccccCCcCceeEEEecc--CceEEEec
Confidence 44555444 56778999999 999999954 45569999998765 4444344 67778888998 33333322
Q ss_pred eeCCCCCCCCcceeEEEeccCCCCc---ceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-EEEe--ecCcee
Q 004971 389 CRGGSTREDGNNQLLLENIKSPLPD---ISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY--FKNAFS 461 (721)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~--~~~~~~ 461 (721)
.++ .|...++...... +......+-.+.|++|++++|.. .++.+.+||....++ ..+. ...+..
T Consensus 278 r~~---------~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 278 RDG---------KILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred CCC---------cEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 222 3455555443221 22334445568999999999998 488999999955543 3333 667889
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
++|+|-..-|+.+..| ..+..+++|...... .+..+.. ...+..+.|++..+.|+...... ..+|.+|+
T Consensus 349 ~awcP~q~~lLAsGGG----s~D~~i~fwn~~~g~-----~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s-~n~i~lw~ 417 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGG----SADRCIKFWNTNTGA-----RIDSVDT-GSQVCSLIWSKKYKELLSTHGYS-ENQITLWK 417 (484)
T ss_pred eeeCCCccCceEEcCC----CcccEEEEEEcCCCc-----Eeccccc-CCceeeEEEcCCCCEEEEecCCC-CCcEEEEe
Confidence 9999987777666543 367889999887532 3333333 34788899999999998876433 34777887
Q ss_pred CCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
..+-+. +..+..+...+..+++||||..|+.++.++ +|..|++-+.
T Consensus 418 ~ps~~~--~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-------Tlrfw~~f~~ 463 (484)
T KOG0305|consen 418 YPSMKL--VAELLGHTSRVLYLALSPDGETIVTGAADE-------TLRFWNLFDE 463 (484)
T ss_pred ccccce--eeeecCCcceeEEEEECCCCCEEEEecccC-------cEEeccccCC
Confidence 776443 778888888899999999999999999986 8999988653
No 94
>PTZ00420 coronin; Provisional
Probab=99.44 E-value=1.6e-10 Score=125.42 Aligned_cols=256 Identities=12% Similarity=0.089 Sum_probs=162.8
Q ss_pred CCCEEEEEEec-CCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 331 NNKFIAVATRR-PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 331 dG~~la~~~~~-~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
+++++++.-.. .|+....|.+|+..... .+..+.+|...+..++|+|+ +..|+..+.++. +.++++.
T Consensus 37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt---------IrIWDi~ 105 (568)
T PTZ00420 37 SSGFVAVPWEVEGGGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLT---------IRVWEIP 105 (568)
T ss_pred CCCeEEEEEEcCCCCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe---------EEEEECC
Confidence 66777764332 34556678899876543 44445667788899999997 677777665554 4555554
Q ss_pred CCCC----------cceecccCCCCceeCcCCCEEEE-E-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEE
Q 004971 409 SPLP----------DISLFRFDGSFPSFSPKGDRIAF-V-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 409 ~~~~----------~~~~~~~~~~~~~~SpDG~~la~-~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~ 474 (721)
.... .+.........++|+|++..++. + .++.|.+||+.+++.. .+. ...+..+.|+|||+.|+.+
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred CCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEE
Confidence 3210 11112223456799999987654 3 4789999999887643 232 4567899999999999877
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc-----ceEEccCCCEEEEEEeeC-CceeEEEEECCC-Ccc
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-----FPSVSPDGKWIVFRSTRT-GYKNLYIMDAEG-GEG 547 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~-g~~ 547 (721)
+ .++.++||++.... ....+..+.+... ...|++|+++|+..+... ..++|.+||+.. +++
T Consensus 186 s-------~D~~IrIwD~Rsg~-----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 186 C-------VGKHMHIIDPRKQE-----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred e-------cCCEEEEEECCCCc-----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 5 46789999876532 4445555543221 124569999988876532 235799999985 332
Q ss_pred cceEECc--CCCcCceeeEEccC-CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971 548 YGLHRLT--EGPWSDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 548 ~~~~~l~--~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG 619 (721)
+..+. .... .-.+.|.++ |..++.+..+. .|++|++..+....+....+......++|.|+.
T Consensus 254 --l~~~~ld~~~~-~L~p~~D~~tg~l~lsGkGD~-------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 254 --LVTMSIDNASA-PLIPHYDESTGLIYLIGKGDG-------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred --eEEEEecCCcc-ceEEeeeCCCCCEEEEEECCC-------eEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 33222 2222 223556555 66666665554 899999988766666543233445678888863
No 95
>PTZ00421 coronin; Provisional
Probab=99.43 E-value=1.1e-10 Score=125.81 Aligned_cols=259 Identities=13% Similarity=0.076 Sum_probs=160.7
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEE
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~ 404 (721)
++. +.+++++.-...|+ ...++.-+.|+... .....+|...+..++|+| +++.|+..+.++. +.+
T Consensus 36 ~~~-n~~~~a~~w~~~gg---~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt---------IkI 102 (493)
T PTZ00421 36 IAC-NDRFIAVPWQQLGS---TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT---------IMG 102 (493)
T ss_pred EeE-CCceEEEEEecCCc---eEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE---------EEE
Confidence 455 66777764333222 12333333443211 112345677788999999 8888888776655 444
Q ss_pred EeccCCC------Cccee---cccCCCCceeCcCC-CEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe
Q 004971 405 ENIKSPL------PDISL---FRFDGSFPSFSPKG-DRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA 470 (721)
Q Consensus 405 ~~~~~~~------~~~~~---~~~~~~~~~~SpDG-~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~ 470 (721)
+++.... ..+.. ....+..++|+|++ ..|+..+ ++.|.+||+.+++..... ...+..+.|+|||+.
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 5543221 11111 12233457899986 4566654 788999999988754333 456889999999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCcceEEccCCCEEEEEEe-eCCceeEEEEECCCCccc
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRST-RTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~SpDg~~l~~~s~-~~g~~~l~~~d~~~g~~~ 548 (721)
|+.++ .++.++||++.... ....+..+.. ......|.+++..|+.... ...+..|.+||+.+...
T Consensus 183 Latgs-------~Dg~IrIwD~rsg~-----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~- 249 (493)
T PTZ00421 183 LCTTS-------KDKKLNIIDPRDGT-----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS- 249 (493)
T ss_pred EEEec-------CCCEEEEEECCCCc-----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-
Confidence 98876 57899999986532 3445555442 3345789999888876653 23467899999976542
Q ss_pred ceEECcC-CCcCceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971 549 GLHRLTE-GPWSDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 549 ~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD 618 (721)
....... .......+.|++|++.|+.++. ++ .|++||+..++...............++|.|.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg-------~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG-------NIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC-------eEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 1222221 1223456789999998888764 43 89999999887665543222233455666663
No 96
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.2e-10 Score=108.18 Aligned_cols=269 Identities=11% Similarity=0.101 Sum_probs=176.1
Q ss_pred ceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC--CCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 272 PCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 272 ~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
.+|+|- |.++++ ...+..+.+|.....+.. ..+.+. .+...++.++||| .|++|+.++ -+..
T Consensus 20 ~awhp~~g~ilAs--cg~Dk~vriw~~~~~~s~-------~ck~vld~~hkrsVRsvAwsp-~g~~La~aS-----FD~t 84 (312)
T KOG0645|consen 20 VAWHPGKGVILAS--CGTDKAVRIWSTSSGDSW-------TCKTVLDDGHKRSVRSVAWSP-HGRYLASAS-----FDAT 84 (312)
T ss_pred EEeccCCceEEEe--ecCCceEEEEecCCCCcE-------EEEEeccccchheeeeeeecC-CCcEEEEee-----ccce
Confidence 478887 777774 344778888865433322 222222 2355688999999 999998865 4455
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-----CcceecccCCCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-----PDISLFRFDGSF 423 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~ 423 (721)
+.+|.-..++...+..+++|...+.+++||++|.+|+..+.+.. +|++.+.... .-+.....++..
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---------VWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---------VWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---------EEEEEecCCCcEEEEeeeccccccccE
Confidence 78888888888788888899999999999999999999887666 6777665331 123334456677
Q ss_pred ceeCcCCCEEEEEe-CCcEEEEECC-CCc---eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 424 PSFSPKGDRIAFVE-FPGVYVVNSD-GSN---RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 424 ~~~SpDG~~la~~~-~~~l~v~d~~-~g~---~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..|+|....|+..+ ++.|.+|.-. +.. ...|. ..-+...+|.|.|.+|+.++ ++..+.||..-..
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-------dD~tv~Iw~~~~~- 227 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-------DDGTVSIWRLYTD- 227 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-------CCcceEeeeeccC-
Confidence 89999877777765 7888888876 443 22333 33567899999999999986 6789999984321
Q ss_pred CCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEEC----cCCCcCceeeEEccC-C
Q 004971 497 VDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRL----TEGPWSDTMCNWSPD-G 569 (721)
Q Consensus 497 ~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l----~~~~~~~~~~~~SpD-G 569 (721)
++. +....+.+.|- + ..|+.... +..|.++-...+-. .....+ ..+...++.+.|.|. .
T Consensus 228 ---------~~~~~sr~~Y~v~W~-~-~~IaS~gg---D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 228 ---------LSGMHSRALYDVPWD-N-GVIASGGG---DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred ---------cchhcccceEeeeec-c-cceEeccC---CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 111 22345557776 3 34555543 55555554332210 001111 134457889999996 4
Q ss_pred CEEEEEEccCCCCCCceeEEEEec
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.+|+.+++++ .|.+|.+
T Consensus 294 ~~L~s~~DDG-------~v~~W~l 310 (312)
T KOG0645|consen 294 NRLASGGDDG-------IVNFWEL 310 (312)
T ss_pred CceeecCCCc-------eEEEEEe
Confidence 4555555553 5666654
No 97
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.42 E-value=1.5e-10 Score=119.03 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=114.2
Q ss_pred CceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCCCCcceEEccCCC-EEEEEEeeCC
Q 004971 458 NAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGKNNAFPSVSPDGK-WIVFRSTRTG 533 (721)
Q Consensus 458 ~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~SpDg~-~l~~~s~~~g 533 (721)
.+.++.|.| |..+|++.+ +++.++||++..++... ......|+.+...+..+.|+|=-. .|+.++.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy--- 698 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY--- 698 (1012)
T ss_pred eeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---
Confidence 467889998 788899886 68999999999876421 123456777777888899998433 4445554
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCCCcCC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAGRANH 612 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~ 612 (721)
+..|.+||+.+++. -..+..+...+..++|||||++++....++ .|++|+..+++.......+ .+..-..
T Consensus 699 d~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-------~~rVy~Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 699 DSTIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKDG-------TLRVYEPRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred cceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeeecCc-------eEEEeCCCCCCCccccCCCCccCccee
Confidence 67899999998875 456777777889999999999999998886 8999998877543221111 1223346
Q ss_pred eEECCCCCEEEEEEecCC
Q 004971 613 PYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 613 ~~~SpDG~~l~~~~~~~~ 630 (721)
+.|.=||++|++...+.-
T Consensus 770 i~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred EEEEecCcEEEEeccccc
Confidence 889999999998877653
No 98
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.5e-12 Score=120.58 Aligned_cols=275 Identities=13% Similarity=0.131 Sum_probs=182.7
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEEC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS 446 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~ 446 (721)
..++.+..|||||++|+..+.++-...|.....-...++.-. ...+......+..+.||.|...||... ++.|.+|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 345667899999999998777665321111000011111100 112222233344568999999888874 889999999
Q ss_pred CCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971 447 DGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522 (721)
Q Consensus 447 ~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg 522 (721)
.+|...+-+ ..++..+.||.|+..++.++ -+..++|.-+.... ..+.+..+...+....|++||
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-------fD~tvRiHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-------FDQTVRIHGLKSGK-----CLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhccc-------ccceEEEeccccch-----hHHHhcCccccccceEEcCCC
Confidence 998753322 56789999999999998876 35566666665433 556666777778889999999
Q ss_pred CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
.+|+..+. +..+.+|+..+++....-........+..+..-|.. .+++++.... .||++++.+.-.+..
T Consensus 361 ~~iisaSs---DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn-------tv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 361 HHIISASS---DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN-------TVYIMNMQGQVVRSF 430 (508)
T ss_pred CeEEEecC---CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC-------eEEEEeccceEEeee
Confidence 99999987 789999999988762111112223445566665654 4555555443 899999987555444
Q ss_pred eecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecCC--c
Q 004971 602 IQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR--F 677 (721)
Q Consensus 602 ~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~--~ 677 (721)
.... ..+.+.....||.|.|+|....+. -+|.+...+|++ +.++-+...+...+..|. .
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~-----------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDG-----------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCc-----------------EEEEEEeecCceeeeeecccccccccccCcccch
Confidence 3211 234556778999999999888765 399999776654 677777777777777774 4
Q ss_pred CCccc
Q 004971 678 IRPVD 682 (721)
Q Consensus 678 l~~~~ 682 (721)
||.-+
T Consensus 494 lAsYs 498 (508)
T KOG0275|consen 494 LASYS 498 (508)
T ss_pred hhhhc
Confidence 44443
No 99
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.41 E-value=1.2e-11 Score=123.49 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=186.6
Q ss_pred cceecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971 271 WPCWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 271 ~~~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l 349 (721)
...|.| .+.+++ ....++.+.||.++.... ..+...+|...+..++|+. +|..+..++ .+..|
T Consensus 219 ai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~--------~lrtf~gH~k~Vrd~~~s~-~g~~fLS~s-----fD~~l 282 (503)
T KOG0282|consen 219 AIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRR--------CLRTFKGHRKPVRDASFNN-CGTSFLSAS-----FDRFL 282 (503)
T ss_pred hhhhccceeeEEE--ecCCCceEEEEEEecCcc--------eehhhhcchhhhhhhhccc-cCCeeeeee-----cceee
Confidence 347888 466666 344489999998887542 4555667777889999999 998877644 45679
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeC
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFS 427 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~S 427 (721)
.+||.++|+...-... ..-...+.+.||+..++++...+. +|..+|++.+.. .....-.....+.|-
T Consensus 283 KlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~--------ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDK--------KIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCC--------cEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 9999999985443322 444667899999977777654443 467777776521 111111123346788
Q ss_pred cCCCEEEEE-eCCcEEEEECCCCceEEEe--ec--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971 428 PKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 428 pDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
++|++.+.. .+..+.+|+...+.+.... .. ....+...|.+++++..+ .++.+.|+.....-. ...
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-------~dN~i~ifs~~~~~r--~nk 422 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-------MDNYIAIFSTVPPFR--LNK 422 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-------cCceEEEEecccccc--cCH
Confidence 999988877 4778999998776643332 22 334677899999998876 356666666442211 012
Q ss_pred eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccC
Q 004971 503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRD 579 (721)
Q Consensus 503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~ 579 (721)
.++...+. +....+.|||||++|+..+. +..+++||..+-+. +..+..+...+....|.|-.. .++.++.++
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl--~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDS---DGKVNFWDWKTTKL--VSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEEeecC---CccEEEeechhhhh--hhccccCCcceEEEEecCCCcceeEecccCc
Confidence 33344443 45566899999999998876 78999999987664 666777777778899999754 566666554
Q ss_pred CCCCCceeEEEEe
Q 004971 580 NPGSGSFEMYLIH 592 (721)
Q Consensus 580 ~~~~~~~~i~~~d 592 (721)
.|++|+
T Consensus 498 -------~Ikiwd 503 (503)
T KOG0282|consen 498 -------LIKIWD 503 (503)
T ss_pred -------eeEecC
Confidence 788775
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=120.65 Aligned_cols=272 Identities=14% Similarity=0.122 Sum_probs=182.2
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc------CCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV------SPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~------~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
..+....||| ||++|+. ++.++-|.+||..+|+.++-.... -....+.++.||.|...|+..+.++.
T Consensus 214 Sh~EcA~FSP-DgqyLvs-----gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk- 286 (508)
T KOG0275|consen 214 SHVECARFSP-DGQYLVS-----GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK- 286 (508)
T ss_pred cchhheeeCC-CCceEee-----ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc-
Confidence 3556788999 9999987 445667999999999865432221 12445677899999998888776666
Q ss_pred CCCCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCC
Q 004971 394 TREDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVR 468 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg 468 (721)
..+|......-..++. ........+.||.|++.|...+ +..+.+-.+.+|+.. ... ...+....|++||
T Consensus 287 ------IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 287 ------IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred ------EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence 4444443222122221 2223445679999999988875 667777788887743 222 4567789999999
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
.++..++ .++.+++|...... ....+... +..+..+..-|.+---.+..++ .+.+|+++..+.-
T Consensus 361 ~~iisaS-------sDgtvkvW~~Ktte-----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--sntv~imn~qGQv 426 (508)
T KOG0275|consen 361 HHIISAS-------SDGTVKVWHGKTTE-----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--SNTVYIMNMQGQV 426 (508)
T ss_pred CeEEEec-------CCccEEEecCcchh-----hhhhccCCCCcccceeEEEcCCCCceEEEEcC--CCeEEEEeccceE
Confidence 9999886 68999999876543 22222222 2344455555654433333443 6789999998543
Q ss_pred ccceEECcCCC---cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 547 GYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 547 ~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
++.++.+. +.......||.|.|+++...+. .+|.+.+.+|+..+.... +...+-.++-.|-...|+
T Consensus 427 ---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~-------vlYCF~~~sG~LE~tl~V-hEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 427 ---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDG-------VLYCFSVLSGKLERTLPV-HEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ---EeeeccCCccCCceEEEEecCCCcEEEEEccCc-------EEEEEEeecCceeeeeec-ccccccccccCcccchhh
Confidence 66666542 3335678999999999999885 899999999987765543 556666667677766666
Q ss_pred EEEecC
Q 004971 624 FTSDYG 629 (721)
Q Consensus 624 ~~~~~~ 629 (721)
..+.++
T Consensus 496 sYsEDg 501 (508)
T KOG0275|consen 496 SYSEDG 501 (508)
T ss_pred hhcccc
Confidence 655554
No 101
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=116.30 Aligned_cols=332 Identities=15% Similarity=0.132 Sum_probs=195.3
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecC-CCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTP-YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
|| +|++|+..++. +|..-|..+-+..+|-. ....... .|+.|..++..+.+.. .
T Consensus 17 Sp--~g~yiAs~~~y-----------rlviRd~~tlq~~qlf~cldki~yi-eW~ads~~ilC~~yk~-----------~ 71 (447)
T KOG4497|consen 17 SP--CGNYIASLSRY-----------RLVIRDSETLQLHQLFLCLDKIVYI-EWKADSCHILCVAYKD-----------P 71 (447)
T ss_pred CC--CCCeeeeeeee-----------EEEEeccchhhHHHHHHHHHHhhhe-eeeccceeeeeeeecc-----------c
Confidence 99 99999987655 67766665555444321 2222333 7889998888766544 3
Q ss_pred eEEEEEcCCCceeEEE-eccCC--cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971 250 DIYIFLTRDGTQRVKI-VENGG--WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~-~~~~~--~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (721)
.|.+|++..-+-.--. .+..+ ...|||||| ++. .++-+-.+.+|.+.... -..+......+...
T Consensus 72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~--tseF~lriTVWSL~t~~----------~~~~~~pK~~~kg~ 139 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL--TSEFDLRITVWSLNTQK----------GYLLPHPKTNVKGY 139 (447)
T ss_pred eEEEEEeecceeEEEeccCCCcceeeeECCCcceEee--eecceeEEEEEEeccce----------eEEecccccCceeE
Confidence 6888888655543322 22333 458999997 444 23335677888554433 22233334455788
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~ 404 (721)
+|.| ||++.+..+++.-.+..+|. +-+. ..+.....+..+..++-|||||..|++-..--. ..++.
T Consensus 140 ~f~~-dg~f~ai~sRrDCkdyv~i~-----~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-------ykv~a 206 (447)
T KOG4497|consen 140 AFHP-DGQFCAILSRRDCKDYVQIS-----SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-------YKVYA 206 (447)
T ss_pred EECC-CCceeeeeecccHHHHHHHH-----hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-------heeee
Confidence 9999 99999987766432222221 1111 112222222344567889999999887432222 22333
Q ss_pred EeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEEC-------------------------------------
Q 004971 405 ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS------------------------------------- 446 (721)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~------------------------------------- 446 (721)
+.-..+ ..+.+|||.++.|++.+ +..+.+.+.
T Consensus 207 Ye~~lG----------~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 207 YERGLG----------LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred eeeccc----------eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 221111 23357777777766652 111111000
Q ss_pred --------CCC--c-----------eEEEe-----------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 447 --------DGS--N-----------RRQVY-----------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 447 --------~~g--~-----------~~~l~-----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
+-+ . +..+. ..++..++||+|..+++...+ .-.+.+.||++..
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd-----~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND-----KYPNALWLWDLQN 351 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC-----CCCceEEEEechh
Confidence 000 0 00000 124567899999999988753 1234455665543
Q ss_pred cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
- ++..+-.....+..+.|.|.--+|++... ..+||.|.+.+-. ........+.+..+.|.-+|..|+.
T Consensus 352 l------~l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~~---~V~vP~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 352 L------KLHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGPR---VVGVPKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred h------hhhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCce---EEecCCCCceeeeEEecCCCcEEEE
Confidence 2 33333333456788999999999988876 6789999998644 5556655577889999999999998
Q ss_pred EEccC
Q 004971 575 ASDRD 579 (721)
Q Consensus 575 ~~~~~ 579 (721)
.+.+.
T Consensus 420 ~~kDa 424 (447)
T KOG4497|consen 420 CGKDA 424 (447)
T ss_pred EcCCc
Confidence 88763
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.41 E-value=1e-10 Score=136.46 Aligned_cols=282 Identities=9% Similarity=0.057 Sum_probs=177.7
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecC--CCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILP--QTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l 349 (721)
.+|++||+++++ ...++.+.||..... ... ....+.........+..++|+|.++.+|+... .++.|
T Consensus 489 i~fs~dg~~lat--gg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-----~Dg~v 557 (793)
T PLN00181 489 IGFDRDGEFFAT--AGVNKKIKIFECESIIKDGR----DIHYPVVELASRSKLSGICWNSYIKSQVASSN-----FEGVV 557 (793)
T ss_pred EEECCCCCEEEE--EeCCCEEEEEECCccccccc----ccccceEEecccCceeeEEeccCCCCEEEEEe-----CCCeE
Confidence 489999987764 334789999964321 100 00001111111224567788772356666533 35569
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee-cccCCCCcee-
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSF- 426 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~- 426 (721)
.+||+.+++ .+.....|...+..++|+| ++..|+..+.++. +.++++..+...... .......+.|
T Consensus 558 ~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~---------v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 558 QVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS---------VKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred EEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE---------EEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 999999876 3344456677788999997 6777777665544 555666543211111 1112233566
Q ss_pred CcCCCEEEEEe-CCcEEEEECCCCce--EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC-Cc
Q 004971 427 SPKGDRIAFVE-FPGVYVVNSDGSNR--RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD-GV 500 (721)
Q Consensus 427 SpDG~~la~~~-~~~l~v~d~~~g~~--~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 500 (721)
+++|..|++.+ ++.|++||+..+.. ..+. ...+..+.|. ++..|+.++ .++.+.||++...... ..
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-------~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-------TDNTLKLWDLSMSISGINE 698 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-------CCCEEEEEeCCCCccccCC
Confidence 56788888874 78999999976542 2232 4467788887 777887775 5788999998643110 01
Q ss_pred cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-----------CcCCCcCceeeEEccCC
Q 004971 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-----------LTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-----------l~~~~~~~~~~~~SpDG 569 (721)
.....+..+......++|+|++++|+..+. +..|++|+........... +..+...+..++|+|+|
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSE---TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCCCEEEEEeC---CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 244566666656677899999999999887 7889999976543200000 11122346789999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEec
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
+.|+.+..++ .|.+|++
T Consensus 776 ~~lva~~~dG-------~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTG-------NIKILEM 792 (793)
T ss_pred CeEEEecCCC-------cEEEEec
Confidence 9998888775 7888875
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.41 E-value=1.6e-11 Score=123.37 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=171.7
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec-------ccCCCCceeCcCCCEEEEE-eCCc
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF-------RFDGSFPSFSPKGDRIAFV-EFPG 440 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~SpDG~~la~~-~~~~ 440 (721)
...+...++.|.|-+++..+.+.. +..+++.+-...+..+ ......++||+.|..|+++ +..+
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~---------v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYT---------VKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEEEEeeecCCCceeeeccccce---------EEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344566788999999987666554 4555654431111111 1234568999999988777 5778
Q ss_pred EEEEECCCCceEEEe------------e---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 441 VYVVNSDGSNRRQVY------------F---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 441 l~v~d~~~g~~~~l~------------~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
..++|-+|-+..... . ..+....|.|+.+..+.++ ..++.++||.++-... ....
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~------s~DgtlRiWdv~~~k~----q~qV 307 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC------SYDGTLRIWDVNNTKS----QLQV 307 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe------cCCCcEEEEecCCchh----heeE
Confidence 888888876654332 1 1345678999999888887 4789999999986543 3333
Q ss_pred cccC---C--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC---cCCCcCceeeEEccCCCEEEEEEc
Q 004971 506 LTTN---G--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL---TEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 506 l~~~---~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l---~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
+... . ..+..++|+|||++|+.... +..|.+|+..+........+ ......++.++||+||++|+..+.
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCL---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhccc---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 3221 1 35567899999999998887 78899999743321111111 122336789999999999998887
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+. .|.+||+..-+.-..... .........+||||.+.|+....-.... ..+.|+.+|..+
T Consensus 385 D~-------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~-----------~~g~L~f~d~~t 446 (641)
T KOG0772|consen 385 DD-------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM-----------TAGTLFFFDRMT 446 (641)
T ss_pred CC-------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC-----------CCceEEEEeccc
Confidence 75 899999976432211111 1223446789999999887655432211 123577777655
Q ss_pred CC-eEEeccCCCCCCCceecCC
Q 004971 656 SD-LKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 656 ~~-~~~lt~~~~~~~~~~~sp~ 676 (721)
=. +..|--....+-...|.|-
T Consensus 447 ~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 447 LDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeEEEecCCCceEEEEeecch
Confidence 33 3344333444556778873
No 104
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=2.8e-09 Score=108.49 Aligned_cols=251 Identities=13% Similarity=0.114 Sum_probs=134.1
Q ss_pred eeecCCCCEEEEEEe-----cCCCCeeeEEEEECCCCceEE-eecccC----CCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 326 ATSPGNNKFIAVATR-----RPTSSYRHIELFDLVKNKFIE-LTRFVS----PKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 326 ~~sp~dG~~la~~~~-----~~g~~~~~l~l~dl~tg~~~~-l~~~~~----~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
.+|| ||+.|+.+.. ..|.....|.+||+++.+... +..... .......+++||||++|++......
T Consensus 52 ~~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~--- 127 (352)
T TIGR02658 52 VVAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS--- 127 (352)
T ss_pred eECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC---
Confidence 4999 9999987654 123345569999999988542 221111 0222347899999999998766644
Q ss_pred CCCcceeEEEeccCCCCcceecccC-CCCceeCcCCCEEEEEeCCcEEEEECC-CCceE----EEeec----CceeeEEc
Q 004971 396 EDGNNQLLLENIKSPLPDISLFRFD-GSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRR----QVYFK----NAFSTVWD 465 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~----~l~~~----~~~~~~~s 465 (721)
..+.+.|+..... +...... ...+-.+.+.+.++.+.++.+..+.++ .|+.. .++.. ....+.++
T Consensus 128 ----~~V~VvD~~~~kv-v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~ 202 (352)
T TIGR02658 128 ----PAVGVVDLEGKAF-VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYS 202 (352)
T ss_pred ----CEEEEEECCCCcE-EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceE
Confidence 4566777665421 1111100 010111111112222223333332222 11111 11111 01233556
Q ss_pred C-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----C---CCCcceEEccCCCEEEEEEee------
Q 004971 466 P-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----G---KNNAFPSVSPDGKWIVFRSTR------ 531 (721)
Q Consensus 466 p-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~---~~~~~~~~SpDg~~l~~~s~~------ 531 (721)
+ ||++++++. .+++.+.++..+..........++.. . +.....+++|||++|++....
T Consensus 203 ~~dg~~~~vs~--------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 203 NKSGRLVWPTY--------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred cCCCcEEEEec--------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 6 787666654 24555444322211000011112211 1 112238999999999986431
Q ss_pred -CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 532 -TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 532 -~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
.+..+|+++|..+++. +..+.-+. ....+++||||+ +|+.+.... ..|.++|+.+++..+-.
T Consensus 275 k~~~~~V~ViD~~t~kv--i~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s------~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKR--LRKIELGH-EIDSINVSQDAKPLLYALSTGD------KTLYIFDAETGKELSSV 338 (352)
T ss_pred cCCCCEEEEEECCCCeE--EEEEeCCC-ceeeEEECCCCCeEEEEeCCCC------CcEEEEECcCCeEEeee
Confidence 2346899999999885 66665443 347899999999 555444332 37999999998765543
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.38 E-value=3.8e-11 Score=111.14 Aligned_cols=268 Identities=10% Similarity=0.060 Sum_probs=171.2
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
.+..+|.++|+. ..+...++|.. .++ . ++-...+|...+..+.++- +.++++. |+.+..+.+|
T Consensus 17 KyN~eGDLlFsc--aKD~~~~vw~s-~nG-e-------rlGty~GHtGavW~~Did~-~s~~liT-----GSAD~t~kLW 79 (327)
T KOG0643|consen 17 KYNREGDLLFSC--AKDSTPTVWYS-LNG-E-------RLGTYDGHTGAVWCCDIDW-DSKHLIT-----GSADQTAKLW 79 (327)
T ss_pred EecCCCcEEEEe--cCCCCceEEEe-cCC-c-------eeeeecCCCceEEEEEecC-Ccceeee-----ccccceeEEE
Confidence 466688898854 33677788843 333 1 4555566666667777766 7788877 5567779999
Q ss_pred ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC------Cccee---cccCCCC
Q 004971 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL------PDISL---FRFDGSF 423 (721)
Q Consensus 353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~---~~~~~~~ 423 (721)
|+++|+....... +..+..+.|+++|..+++..+..-.. . ..+.+.++.... ..+.. .......
T Consensus 80 Dv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~--~--~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 80 DVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGY--T--CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCc--c--eEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999985443332 55677889999999998866543211 1 234444444221 11111 1222345
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCCCceE-EE---eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QV---YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l---~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
..|+|-|+.|++. .++.|..||+.+|... .. ....+.++.+|+|..+++..+ .+.+..++++..-.
T Consensus 153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-------~Dttakl~D~~tl~-- 223 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-------KDTTAKLVDVRTLE-- 223 (327)
T ss_pred eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-------cCccceeeecccee--
Confidence 6899999999888 5889999999987532 22 145788999999999988876 57788888876432
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccC
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpD 568 (721)
..+..... ..+...+++|-...++.....+ -..+---+...|+. .++.++..+-+.++.++|+||
T Consensus 224 ---v~Kty~te-~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 224 ---VLKTYTTE-RPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ---eEEEeeec-ccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 22222222 3667789999888887765321 11222222222211 124555666677899999999
Q ss_pred CCEEEEEEcc
Q 004971 569 GEWIAFASDR 578 (721)
Q Consensus 569 G~~l~~~~~~ 578 (721)
|+..+.+..+
T Consensus 299 GksYsSGGED 308 (327)
T KOG0643|consen 299 GKSYSSGGED 308 (327)
T ss_pred CcccccCCCC
Confidence 9965444443
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=7.5e-11 Score=126.68 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=164.9
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSD 447 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~ 447 (721)
......+.|.|+|+.|+.+..++. .++|-..-.. ..+-+..........+.-++.+++.. .+..+.+|...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~-------ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD-------IRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc-------eEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence 444567899999998888766665 2233221110 11111110112223445555566665 47889999998
Q ss_pred CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971 448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524 (721)
Q Consensus 448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~ 524 (721)
.++...|. .-.+...+++-+|++++..+ ++-.+.+..++..+ ..+.+..+.+.+..+.|+|.+..
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaags-------dD~~vK~~~~~D~s-----~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGS-------DDTAVKLLNLDDSS-----QEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeec-------CceeEEEEeccccc-----hheeecccCCceeeeeEcCCCCE
Confidence 88765333 55788999999999999987 46677777776654 66778888889999999999999
Q ss_pred EEEEEeeCCceeEEEEECCCCcccceEECcC---C-----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE---G-----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~---~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
||+.+- ++.|++|+++++.. ...++. . ......++|+|+|..+++...+. .|.+|+..+.
T Consensus 153 LAvss~---dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-------~Vkvy~r~~w 220 (933)
T KOG1274|consen 153 LAVSSC---DGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-------TVKVYSRKGW 220 (933)
T ss_pred EEEEec---CceEEEEEcccchh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-------eEEEEccCCc
Confidence 999887 78999999998875 333321 1 22346799999977777777664 8999999888
Q ss_pred ceEE-eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 597 GLRK-LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 597 ~~~~-l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+..- |....+...+..++|||.|+||+...-++ +|-+||.++
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-----------------~I~vWnv~t 263 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-----------------QILVWNVDT 263 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCC-----------------cEEEEeccc
Confidence 6543 32222333478899999999999877665 488888775
No 107
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=7e-10 Score=115.70 Aligned_cols=316 Identities=14% Similarity=0.145 Sum_probs=162.4
Q ss_pred eeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971 249 TDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325 (721)
Q Consensus 249 ~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (721)
..|.++|.++.+........+. ...+++||+.+|.. .+++.+.++++ .... ...++ ..+.....+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~--~rdg~vsviD~--~~~~-------~v~~i-~~G~~~~~i 83 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA--NRDGTVSVIDL--ATGK-------VVATI-KVGGNPRGI 83 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE--ETTSEEEEEET--TSSS-------EEEEE-E-SSEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE--cCCCeEEEEEC--Cccc-------EEEEE-ecCCCcceE
Confidence 6899999988876655443333 24789999966643 34676666543 2221 23333 334466789
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
++|+ ||++++......+ .+.++|.++.+......... ....+..+.-+|.....++...+. .
T Consensus 84 ~~s~-DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--------~ 150 (369)
T PF02239_consen 84 AVSP-DGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT--------G 150 (369)
T ss_dssp EE---TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--------T
T ss_pred EEcC-CCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--------C
Confidence 9999 9999987654433 49999999887543221110 112233455677777655543332 4
Q ss_pred eeEEEeccCCCCcc-eecc--cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-ecC-----ceeeEEcCCCC
Q 004971 401 QLLLENIKSPLPDI-SLFR--FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-FKN-----AFSTVWDPVRE 469 (721)
Q Consensus 401 ~l~~~~~~~~~~~~-~~~~--~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~~~-----~~~~~~spdg~ 469 (721)
++++.+........ .... .......|+|||++++.. ....|.++|..+++...+. .+. ...-...|..-
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 67888765442111 1111 112235899999988776 4678999999887755433 111 00101122222
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccC---CCCccceEEcccCCCCCcceEEccCCCEEEEEEee-CCceeEEEEECCCC
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDD---VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-TGYKNLYIMDAEGG 545 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~-~g~~~l~~~d~~~g 545 (721)
.+...... ....+-+.--+... ......++.+...+.. ..+..+||+++|++.... .....|.++|.++-
T Consensus 231 ~vw~~~~~-----~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 231 PVWATSGL-----GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEEEEBS-----SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred eEEeeccc-----cceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 22221100 00000111111100 0011234455544433 778889999999987211 12568999999987
Q ss_pred cccceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 546 EGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 546 ~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
+. ...+..... ...++.|++||++++++..+.+ ..|.+||..+.+..+..
T Consensus 305 ~~--~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~-----~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 305 KV--VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN-----GAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EE--EE-HHHHHT--EEEEEE-TTSSEEEEEEE--T-----TEEEEEETTTTEEEEEE
T ss_pred ce--eEEEeccCCCcEeccEECCCCCEEEEEEecCC-----CEEEEEECCCcEEEEEE
Confidence 53 555553322 3578999999999999888741 18999999998766544
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.38 E-value=7.1e-11 Score=118.74 Aligned_cols=294 Identities=14% Similarity=0.120 Sum_probs=178.6
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-----eEEeecccCCCCcccCcEEcCCCCEEEE
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-----FIELTRFVSPKTHHLNPFISPDSSRVGY 386 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-----~~~l~~~~~~~~~~~~~~~Spdg~~l~~ 386 (721)
..++..+.-.+..+++.| .|.+++. |+.+..+..||+..-. .++|...+ ...+....||+.|..|+.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp-~GaR~~s-----Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDP-SGARFVS-----GSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQILV 231 (641)
T ss_pred eEeccCCceEEEEeeecC-CCceeee-----ccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEEE
Confidence 445555555667888999 9988876 5567779999987432 22333222 233567899999999887
Q ss_pred EEeeCCCC--CCCC-------cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc-eEEE
Q 004971 387 HKCRGGST--REDG-------NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN-RRQV 454 (721)
Q Consensus 387 ~~~~~~~~--~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~-~~~l 454 (721)
++...... .+++ +...|+.++..-... ........|+|+.+..+.. .++.+.+|++...+ ..++
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGH----ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGH----IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCc----eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 76544321 1111 011122222100000 0112235899998765554 48899999997544 2333
Q ss_pred e--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971 455 Y--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526 (721)
Q Consensus 455 ~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~ 526 (721)
. .-.+...+|+|||+.||..+ .++.+.+|.......-....++.-...+..+..+.||+||++|+
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc-------~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGC-------LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcc-------cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 2 12466899999999998876 68999999974322100011111112224678899999999999
Q ss_pred EEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
..+. +..|.+||+..-+. .+...+ ...+......||||.+.|+.+..-.+. .....|+.+|..+-....-...
T Consensus 381 SRg~---D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~-~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 381 SRGF---DDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG-MTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hccC---CCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEecccccCC-CCCceEEEEeccceeeEEEecC
Confidence 8776 88999999986442 111111 123344678999999877776553322 2334799999776544332222
Q ss_pred CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 605 GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
....+....|.|-=..|...+.+++
T Consensus 456 -~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 456 -STASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred -CCceEEEEeecchhhheeeecCCCc
Confidence 3445667788887666666666654
No 109
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4.7e-11 Score=112.93 Aligned_cols=173 Identities=14% Similarity=0.183 Sum_probs=114.0
Q ss_pred eeeEEcCCCCeEEEEecCC---CCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971 460 FSTVWDPVREAVVYTSGGP---EFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK 535 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~ 535 (721)
-.+.|+|+|+.|++..... .-....+...||.++..+. ....+.... +.+..++|+|+|+++++..... ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-PA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC----ccceeeccCCCceEEEEECcCCCEEEEEEccC-Cc
Confidence 4567888888887766411 1111235678888877654 444444332 4588999999999998775422 34
Q ss_pred eEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615 (721)
Q Consensus 536 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 615 (721)
.+.+||++... +..+.. .....+.|||+|++|++++... ....|.+||+...+..... .......+.|
T Consensus 84 ~v~lyd~~~~~---i~~~~~--~~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~~~~~~i~~~---~~~~~t~~~W 151 (194)
T PF08662_consen 84 KVTLYDVKGKK---IFSFGT--QPRNTISWSPDGRFLVLAGFGN----LNGDLEFWDVRKKKKISTF---EHSDATDVEW 151 (194)
T ss_pred ccEEEcCcccE---eEeecC--CCceEEEECCCCCEEEEEEccC----CCcEEEEEECCCCEEeecc---ccCcEEEEEE
Confidence 89999997333 555543 3346799999999999988652 2347999999865443332 2334678999
Q ss_pred CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660 (721)
Q Consensus 616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 660 (721)
||||++|+.+....... -...+.+|+..|..+.+
T Consensus 152 sPdGr~~~ta~t~~r~~-----------~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLR-----------VDNGFKIWSFQGRLLYK 185 (194)
T ss_pred cCCCCEEEEEEecccee-----------ccccEEEEEecCeEeEe
Confidence 99999999877542211 11247888887775543
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=6.4e-11 Score=126.52 Aligned_cols=195 Identities=17% Similarity=0.076 Sum_probs=136.9
Q ss_pred CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCC-CeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVR-EAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.-.+.||.++ +|... -+..+.+|++...+...++ ...++.++|.|-. ++++..+ -+++++||.+...
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS-------LD~KvRiWsI~d~- 442 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS-------LDGKVRLWSISDK- 442 (712)
T ss_pred heecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc-------cccceEEeecCcC-
Confidence 3357999987 44444 5899999999988876666 7789999999954 4444443 6899999999753
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC------CcCceeeEEccC-C
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG------PWSDTMCNWSPD-G 569 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~------~~~~~~~~~SpD-G 569 (721)
++.....-...+..++|+|||+..++.+. ++.+++|+..+-+...-..+... ...++.+.|.|- -
T Consensus 443 -----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~---~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 443 -----KVVDWNDLRDLITAVCYSPDGKGAVIGTF---NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred -----eeEeehhhhhhheeEEeccCCceEEEEEe---ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 44555555568889999999999999887 67777888776543212222111 124778888763 3
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC-CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA-GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
..|++++++. +|.+||.....+......... .......|+.||++|+.++.+. .+
T Consensus 515 ~~vLVTSnDS-------rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-----------------~V 570 (712)
T KOG0283|consen 515 DEVLVTSNDS-------RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS-----------------WV 570 (712)
T ss_pred CeEEEecCCC-------ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc-----------------eE
Confidence 3688888774 899999866554444332122 2335678999999999999655 49
Q ss_pred EEEEcCCC
Q 004971 649 FKIKLDGS 656 (721)
Q Consensus 649 ~~~d~~~~ 656 (721)
|+|+.+..
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99997443
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.9e-10 Score=112.37 Aligned_cols=323 Identities=16% Similarity=0.220 Sum_probs=192.7
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcc----eEeecCCCCCccccccCCCCCEEEEEecCCC--CCCccc
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL----TRRLTPYGVADFSPAVSPSGKYTAVASYGNK--GWDGEV 244 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~----~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~--~w~~~~ 244 (721)
|| -|.+|+....+| ..|| ||+ .+++ .|+..... .|||..+||+.-+.... .|.
T Consensus 219 SP--~GTYL~t~Hk~G---------I~lW-----GG~~f~r~~RF-~Hp~Vq~i-dfSP~EkYLVT~s~~p~~~~~~--- 277 (698)
T KOG2314|consen 219 SP--KGTYLVTFHKQG---------IALW-----GGESFDRIQRF-YHPGVQFI-DFSPNEKYLVTYSPEPIIVEED--- 277 (698)
T ss_pred cC--CceEEEEEeccc---------eeee-----cCccHHHHHhc-cCCCceee-ecCCccceEEEecCCccccCcc---
Confidence 99 999888766553 3555 443 4455 67777777 89999999996443211 111
Q ss_pred ceeeeeEEEEEcCCCceeEEEec-cC---Ccc--eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-
Q 004971 245 EMLSTDIYIFLTRDGTQRVKIVE-NG---GWP--CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP- 317 (721)
Q Consensus 245 ~~~~~~i~~~d~~~g~~~~l~~~-~~---~~~--~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~- 317 (721)
......|.+||+.+|...+-... .+ .+| .||.|++.++ ++. ...+.||....- .+.....
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A-rm~--~~sisIyEtpsf----------~lld~Ksl 344 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA-RMT--GNSISIYETPSF----------MLLDKKSL 344 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeE-Eec--cceEEEEecCce----------eeeccccc
Confidence 11247899999999987765422 12 244 8999977544 333 245566632211 0100000
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
.-..+....||| .+..|||-+........++-++.+.+++......+ .......+-|-.+|++|.+-..+-..
T Consensus 345 ki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK---- 417 (698)
T KOG2314|consen 345 KISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTK---- 417 (698)
T ss_pred CCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeecc----
Confidence 112457889999 99999997665555556678888877763332221 22333345677777777664332220
Q ss_pred CcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEe-ecCceeeEEcCCCCeEEEE
Q 004971 398 GNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVY-FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~-~~~~~~~~~spdg~~la~~ 474 (721)
.+.. -.++ .+-++.+.... ...+. ...+..++|-|.|.++++.
T Consensus 418 -----------~~~~-----------g~f~------------n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 418 -----------SKVK-----------GQFS------------NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred -----------cccc-----------ceEe------------eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence 0000 0111 12222222211 11222 4677899999999999998
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
+.. ....++.+|.+..... ....+..-+ .....+.|||.|++++++...+....|+.+|.+-...+ ....
T Consensus 464 ~g~----~~k~tvsfY~~e~~~~----~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~ 534 (698)
T KOG2314|consen 464 SGN----TVKNTVSFYAVETNIK----KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-DTAS 534 (698)
T ss_pred Ecc----ccccceeEEEeecCCC----chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh-hccC
Confidence 743 2367888998886443 333332222 45667899999999999987766778999998743311 1112
Q ss_pred cCCCcCceeeEEccCCCEEEEEEcc
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
..+ ...+.+.|.|.|++++.++.-
T Consensus 535 ~eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 535 PEH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccc-cccccceECCCCCEEEEeeeh
Confidence 222 234678999999999887753
No 112
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5.6e-09 Score=111.79 Aligned_cols=436 Identities=10% Similarity=0.125 Sum_probs=251.8
Q ss_pred eeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecC-CceeE
Q 004971 44 FDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNG-TSNIY 122 (721)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~ 122 (721)
-.+|.+.... ...+.-.|.+++.+..|.|++- +|++.-|. ..+||
T Consensus 33 IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qp-----------------------------lFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 33 IQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQP-----------------------------LFVSGGDDYKIKVW 78 (1202)
T ss_pred eeeehhhhhh-----HHhhhhccCCccceeeecCCCC-----------------------------eEEecCCccEEEEE
Confidence 4688885522 2455678999999999999864 66665443 67899
Q ss_pred EeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEE
Q 004971 123 YDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYST 201 (721)
Q Consensus 123 ~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v 201 (721)
.+. .+|-..| .++ .+.|. .+ .| ++ .=-+|+-++++.. .+||..
T Consensus 79 nYk---------~rrclftL~GH---lDYVR--t~-------~F-----Hh--eyPWIlSASDDQT--------IrIWNw 122 (1202)
T KOG0292|consen 79 NYK---------TRRCLFTLLGH---LDYVR--TV-------FF-----HH--EYPWILSASDDQT--------IRIWNW 122 (1202)
T ss_pred ecc---------cceehhhhccc---cceeE--Ee-------ec-----cC--CCceEEEccCCCe--------EEEEec
Confidence 986 2331122 221 22222 11 34 55 3446777666632 467766
Q ss_pred eCCCc-ceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCcee------------------
Q 004971 202 ELKTG-LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR------------------ 262 (721)
Q Consensus 202 ~~~~g-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~------------------ 262 (721)
. ++ ...-||.|.+......|.|....|+.++-+ ..|.+||..+-..+
T Consensus 123 q--sr~~iavltGHnHYVMcAqFhptEDlIVSaSLD------------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 123 Q--SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD------------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred c--CCceEEEEecCceEEEeeccCCccceEEEeccc------------ceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 4 44 345688999888888999988899987744 34666665332111
Q ss_pred -----------EEEeccC---CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceee
Q 004971 263 -----------VKIVENG---GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328 (721)
Q Consensus 263 -----------~l~~~~~---~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (721)
.+..... ++.+|.|.--++++ ..+|..+.+|++.....+ +....-+|-..+..+-|.
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrmnetKaW-------EvDtcrgH~nnVssvlfh 259 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKAW-------EVDTCRGHYNNVSSVLFH 259 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEeccccce-------eehhhhcccCCcceEEec
Confidence 1111111 14466665445552 333788899988766644 333334555577888999
Q ss_pred cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
| ..+.|+. .+++..|++||+...+..+.. .......+.++..|..+.++. ..+.+ ..++...
T Consensus 260 p-~q~lIlS-----nsEDksirVwDm~kRt~v~tf--rrendRFW~laahP~lNLfAA-gHDsG-------m~VFkle-- 321 (1202)
T KOG0292|consen 260 P-HQDLILS-----NSEDKSIRVWDMTKRTSVQTF--RRENDRFWILAAHPELNLFAA-GHDSG-------MIVFKLE-- 321 (1202)
T ss_pred C-ccceeEe-----cCCCccEEEEecccccceeee--eccCCeEEEEEecCCcceeee-ecCCc-------eEEEEEc--
Confidence 8 8776665 235677999999876643332 222444555666776665443 33333 2222221
Q ss_pred CCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe----e----cCceeeEEcCCCCeEEEEecCCCC
Q 004971 409 SPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY----F----KNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~----~----~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
-..+++.-.+..|.|+.+..|+.+|+.+.+-..+. . ....++.++|....+.++++
T Consensus 322 ------------RErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~---- 385 (1202)
T KOG0292|consen 322 ------------RERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN---- 385 (1202)
T ss_pred ------------ccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec----
Confidence 11234434466799998999999999875533332 1 34567899998888888764
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~ 560 (721)
.+.+...++.+..+.... ......... .-....|-.-+++.++... ..++.+-++.+.. .+.+... ...
T Consensus 386 -~~n~~y~L~~ipk~~~~~-~~~~~~~k~--tG~~a~fvarNrfavl~k~---~~~v~ik~l~N~v---tkkl~~~-~~~ 454 (1202)
T KOG0292|consen 386 -LDNGEYELVQIPKDSDGV-SDGKDVKKG--TGEGALFVARNRFAVLDKS---NEQVVIKNLKNKV---TKKLLLP-EST 454 (1202)
T ss_pred -cCCCeEEEEEecCccccc-CCchhhhcC--CCCceEEEEecceEEEEec---CcceEEecccchh---hhcccCc-ccc
Confidence 356788888887653200 010111111 1122334444444444433 3455555665443 2333221 112
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..+-+.-+|..| ..+.+ .|-++|+..++..--. .-..+..+.||+|+.++++.+...
T Consensus 455 ~~IF~ag~g~ll-l~~~~--------~v~lfdvQq~~~~~si---~~s~vkyvvws~dm~~vAll~Kh~ 511 (1202)
T KOG0292|consen 455 DDIFYAGTGNLL-LRSPD--------SVTLFDVQQKKKVGSI---KVSKVKYVVWSNDMSRVALLSKHT 511 (1202)
T ss_pred cceeeccCccEE-EEcCC--------eEEEEEeecceEEEEE---ecCceeEEEEcCccchhhhcccce
Confidence 345555566533 33333 6888998776543332 234567789999999988877653
No 113
>PTZ00420 coronin; Provisional
Probab=99.34 E-value=8.6e-10 Score=119.70 Aligned_cols=218 Identities=13% Similarity=0.052 Sum_probs=143.4
Q ss_pred CCCceeCcC-CCEEEEEe-CCcEEEEECCCCce---------EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 421 GSFPSFSPK-GDRIAFVE-FPGVYVVNSDGSNR---------RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 421 ~~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~~---------~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
...++|+|+ +..|+..+ ++.|.+|++..+.. ..+. ...+..+.|+|++..+++++ ..++.+
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg------S~DgtI 150 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS------GFDSFV 150 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE------eCCCeE
Confidence 345799997 67777774 88999999975421 1222 45678999999998876544 257899
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc-----ee
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD-----TM 562 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~-----~~ 562 (721)
.||++.... ....+. +...+..++|+|||+.|+..+. +..|.+||+.+++. +..+..+.+.. ..
T Consensus 151 rIWDl~tg~-----~~~~i~-~~~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 151 NIWDIENEK-----RAFQIN-MPKKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred EEEECCCCc-----EEEEEe-cCCcEEEEEECCCCCEEEEEec---CCEEEEEECCCCcE--EEEEecccCCceeEEEEe
Confidence 999986543 333343 3346788999999999988775 67899999998875 44554444322 12
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEECCC-CCEEEEEEecCCCcCCCCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYFSPD-GKSIVFTSDYGGISAEPISTPH 640 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~ 640 (721)
..|++|+++|+.++.+. ...+.|.+||+.. +++............-.+.|.++ |.+++....+.
T Consensus 220 ~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~----------- 285 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG----------- 285 (568)
T ss_pred eeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC-----------
Confidence 24579999998877653 2335799999984 44433322111112223455555 66555544444
Q ss_pred CCCCCccEEEEEcCCCCeEEeccCCC--CCCCceecC
Q 004971 641 QYQPYGEIFKIKLDGSDLKRLTQNSF--EDGTPAWGP 675 (721)
Q Consensus 641 ~~~~~~~l~~~d~~~~~~~~lt~~~~--~~~~~~~sp 675 (721)
.|++|++..+....|..+.. .....+|.|
T Consensus 286 ------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 286 ------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred ------eEEEEEccCCcEEeecccccCCCccceEEcc
Confidence 39999998888888876432 235678888
No 114
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=2.7e-10 Score=118.75 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=152.3
Q ss_pred EEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-c
Q 004971 335 IAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-D 413 (721)
Q Consensus 335 la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 413 (721)
|+++..+ ....|.++|.++.+... .............++|||++++..+.+ ..+.+.|+.+... .
T Consensus 7 l~~V~~~---~~~~v~viD~~t~~~~~--~i~~~~~~h~~~~~s~Dgr~~yv~~rd---------g~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 7 LFYVVER---GSGSVAVIDGATNKVVA--RIPTGGAPHAGLKFSPDGRYLYVANRD---------GTVSVIDLATGKVVA 72 (369)
T ss_dssp EEEEEEG---GGTEEEEEETTT-SEEE--EEE-STTEEEEEE-TT-SSEEEEEETT---------SEEEEEETTSSSEEE
T ss_pred EEEEEec---CCCEEEEEECCCCeEEE--EEcCCCCceeEEEecCCCCEEEEEcCC---------CeEEEEECCcccEEE
Confidence 4444443 33459999999887432 222212224457899999998886532 2467777765521 1
Q ss_pred ceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceE-EEee---------cCceeeEEcCCCCeEEEEecCCCCC
Q 004971 414 ISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRR-QVYF---------KNAFSTVWDPVREAVVYTSGGPEFA 481 (721)
Q Consensus 414 ~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~-~l~~---------~~~~~~~~spdg~~la~~~~~~~~~ 481 (721)
..........+++|+||++++.. ..+.+.++|..+.++. .+.. ..+..+.-+|....+++...
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----- 147 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----- 147 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-----
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-----
Confidence 11122334567999999999887 4789999999887754 4431 12345667888886666542
Q ss_pred CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc-------------
Q 004971 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY------------- 548 (721)
Q Consensus 482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~------------- 548 (721)
..-+||.++.... .....+.+. .........|+|||++++.+.+. ...|-++|..+++..
T Consensus 148 ---d~~~I~vVdy~d~-~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~~k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 148 ---DTGEIWVVDYSDP-KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKTGKLVALIDTGKKPHPGP 220 (369)
T ss_dssp ---TTTEEEEEETTTS-SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred ---cCCeEEEEEeccc-cccceeeec-ccccccccccCcccceeeecccc--cceeEEEeeccceEEEEeeccccccccc
Confidence 2346666665432 001122222 23355678999999999886543 224444444433210
Q ss_pred ----------------------------------------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 549 ----------------------------------------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 549 ----------------------------------------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
.++++..... ...+..+||+++|++...-. .....|
T Consensus 221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-glFi~thP~s~~vwvd~~~~---~~~~~v 296 (369)
T PF02239_consen 221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-GLFIKTHPDSRYVWVDTFLN---PDADTV 296 (369)
T ss_dssp EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-S--EE--TT-SEEEEE-TT----SSHT-E
T ss_pred cccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-cceeecCCCCccEEeeccCC---CCCceE
Confidence 0111111111 13456699999998873222 134589
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEec
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLT 662 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt 662 (721)
.++|..+-+...-..........++.|++||++++++..+.+. .|.++|.++.++ ++|+
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~---------------~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG---------------AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT---------------EEEEEETTTTEEEEEEE
T ss_pred EEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC---------------EEEEEECCCcEEEEEEE
Confidence 9999988754433222122347789999999999887776542 499999988765 4665
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.34 E-value=5.5e-09 Score=111.37 Aligned_cols=217 Identities=14% Similarity=0.116 Sum_probs=136.0
Q ss_pred CeeeEEEEECCCCce--EEeec--ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-----
Q 004971 345 SYRHIELFDLVKNKF--IELTR--FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS----- 415 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~--~~l~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----- 415 (721)
++..++.|+...... ..+.. +.........++.|+.|+..+.....+. |-+.++.++...-.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~---------Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT---------IDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe---------EEEEEcccCeeecccccCc
Confidence 345577888765432 11111 1112345667888999987766544443 44445555432111
Q ss_pred ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 416 LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 416 ~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
........++...-++.++.+ ..+-+..||...+... .+. ...+..+.++.....++... ++-.+.++++
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~-------ddf~I~vvD~ 563 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL-------DDFSIRVVDV 563 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc-------CceeEEEEEc
Confidence 111222223333333445555 4778899999877632 222 34555666666666666654 3455666665
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l 572 (721)
.... .++.+..+...+..+.||||||||+.++. +..|++||+.++.. +..+. -......+.|||+|.+|
T Consensus 564 ~t~k-----vvR~f~gh~nritd~~FS~DgrWlisasm---D~tIr~wDlpt~~l--ID~~~-vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 564 VTRK-----VVREFWGHGNRITDMTFSPDGRWLISASM---DSTIRTWDLPTGTL--IDGLL-VDSPCTSLSFSPNGDFL 632 (910)
T ss_pred hhhh-----hhHHhhccccceeeeEeCCCCcEEEEeec---CCcEEEEeccCcce--eeeEe-cCCcceeeEECCCCCEE
Confidence 4432 45667777888999999999999999998 88999999999884 33332 23345789999999999
Q ss_pred EEEEccCCCCCCceeEEEEecC
Q 004971 573 AFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
|....+. ..||+|.-.
T Consensus 633 AT~Hvd~------~gIylWsNk 648 (910)
T KOG1539|consen 633 ATVHVDQ------NGIYLWSNK 648 (910)
T ss_pred EEEEecC------ceEEEEEch
Confidence 9999775 479999743
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.33 E-value=4.2e-11 Score=131.18 Aligned_cols=222 Identities=18% Similarity=0.126 Sum_probs=158.6
Q ss_pred CceeCcCCCEEEEEe---CCcEEEEECCCC----------ceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCC
Q 004971 423 FPSFSPKGDRIAFVE---FPGVYVVNSDGS----------NRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASES 484 (721)
Q Consensus 423 ~~~~SpDG~~la~~~---~~~l~v~d~~~g----------~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~ 484 (721)
.+..+|||.+++..+ ++.+.+|+.+.= .+..+. .+.+..+.|||||++||+.+ ++
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS-------DD 90 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS-------DD 90 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc-------Cc
Confidence 357788988877763 445556664421 011222 45677899999999999997 56
Q ss_pred CcEEEEEEEccCC-------------CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 485 SEVDIISINVDDV-------------DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 485 ~~~~i~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
.-+.||.....+. ........+..|...+..+.|+||+.+|+..+. +..|.+|+..+.+. ++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~---DnsViiwn~~tF~~--~~ 165 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL---DNSVIIWNAKTFEL--LK 165 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc---cceEEEEcccccee--ee
Confidence 7788898873110 011244556677788889999999999999988 88999999998764 77
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-----CCCCcCCeEECCCCCEEEEEE
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----SAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~~~SpDG~~l~~~~ 626 (721)
.+..+..-+-.++|.|-|++|+..+++. .|.+|....-...+.+... ....+..+.|||||++|+...
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDr-------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDR-------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCc-------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 7777877788999999999999999885 8999997654444433221 223456789999999998765
Q ss_pred ecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccCCCCCCCceecCC
Q 004971 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~~~~~~~~~~sp~ 676 (721)
.-++. .+-+-+++.++-+ ...|-.|.....-..|.|.
T Consensus 239 A~n~~-------------~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 239 AVNGG-------------KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred hccCC-------------cceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 53321 1247777776655 4577777777777888884
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2.9e-10 Score=122.27 Aligned_cols=260 Identities=15% Similarity=0.121 Sum_probs=175.5
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
...+++.| +|++|+... .++.|.+|+.-+.. +..+.. .+..+ ..+.-++.+++..+.++.
T Consensus 16 ~t~i~~d~-~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~---~g~~v--~~ia~~s~~f~~~s~~~t------- 77 (933)
T KOG1274|consen 16 LTLICYDP-DGEFICTCG-----SDGDIRKWKTNSDEEEPETIDI---SGELV--SSIACYSNHFLTGSEQNT------- 77 (933)
T ss_pred eEEEEEcC-CCCEEEEec-----CCCceEEeecCCcccCCchhhc---cCcee--EEEeecccceEEeeccce-------
Confidence 46789999 999776632 34458888765442 111110 11112 334445667777666655
Q ss_pred ceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEE
Q 004971 400 NQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 400 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~ 473 (721)
+.++.+..+.. -+..+....+.++++.+|+++|+.+ +..|.+++....... .+. .+.+..+.|+|.+..||+
T Consensus 78 --v~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 78 --VLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV 155 (933)
T ss_pred --EEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence 44555554422 3444445567789999999999985 778899998765543 333 678899999999999999
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
.+ -++.+.||.++... ....++.- ......++|+|+|..+++... +..+.+|+.++.
T Consensus 156 ss-------~dG~v~iw~~~~~~-----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 156 SS-------CDGKVQIWDLQDGI-----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGW 220 (933)
T ss_pred Ee-------cCceEEEEEcccch-----hhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCc
Confidence 86 57999999998543 22222221 123456899999777777766 678999999988
Q ss_pred cccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 546 EGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 546 ~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
+. ...+... ......++|||.|++||....++ .|.+||+++-+. .. ....+...+|-|++..|-
T Consensus 221 e~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-------~I~vWnv~t~~~-~~----~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 221 EL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-------QILVWNVDTHER-HE----FKRAVCCEAWKPNANAIT 286 (933)
T ss_pred ee--heeecccccccceEEEEEcCCCcEEeeeccCC-------cEEEEecccchh-cc----ccceeEEEecCCCCCeeE
Confidence 75 3333322 22257899999999999999886 899999987322 11 334677889999988887
Q ss_pred EEEecCC
Q 004971 624 FTSDYGG 630 (721)
Q Consensus 624 ~~~~~~~ 630 (721)
+......
T Consensus 287 ~~~~~g~ 293 (933)
T KOG1274|consen 287 LITALGT 293 (933)
T ss_pred EEeeccc
Confidence 6665543
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=119.38 Aligned_cols=274 Identities=15% Similarity=0.093 Sum_probs=181.1
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+..+...++.+.|-+ +...++. ++.+..|.+|+...++...+..+.+..+.+....+.+++++++..+.++.
T Consensus 171 ld~h~gev~~v~~l~-~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~-- 242 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR-NSDTLAT-----GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN-- 242 (459)
T ss_pred hhccccccceeEEcc-Ccchhhh-----cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc--
Confidence 334455667788887 7666665 44566799999987775555556666677888999999999988777766
Q ss_pred CCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeE
Q 004971 395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAV 471 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~l 471 (721)
.++|-.+-......+.........+.|.-...+++.. .+..|..||+..+... .+. ...+.++..+ ..
T Consensus 243 -----~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~----~~ 313 (459)
T KOG0288|consen 243 -----LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS----IS 313 (459)
T ss_pred -----eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec----ce
Confidence 3344333211122233222233334444444443333 3677889998776532 222 3344444444 12
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
.+.+. -.+.++++|++.... ....+..+ +.+.++..++||..|...+. +..|-++|+.+.+ +.
T Consensus 314 ~~~Sg-----H~DkkvRfwD~Rs~~-----~~~sv~~g-g~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~e---I~ 376 (459)
T KOG0288|consen 314 DVISG-----HFDKKVRFWDIRSAD-----KTRSVPLG-GRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKE---IR 376 (459)
T ss_pred eeeec-----ccccceEEEeccCCc-----eeeEeecC-cceeeEeeccCCeEEeeecC---CCceeeeeccccc---EE
Confidence 22222 136779999976643 33444444 48889999999999988765 6789999999887 44
Q ss_pred ECcCC-----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC-CcCCeEECCCCCEEEEE
Q 004971 552 RLTEG-----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANHPYFSPDGKSIVFT 625 (721)
Q Consensus 552 ~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~~~~SpDG~~l~~~ 625 (721)
..... ..+.+...||||+++++.++.++ .||+|++.++++.......+.. .+..++|+|-|+.|+.+
T Consensus 377 ~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-------sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-------SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEeeccccccccccceeEECCCCceeeeccCCC-------cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 43321 22356789999999999999886 8999999999988776543333 58899999999999876
Q ss_pred EecC
Q 004971 626 SDYG 629 (721)
Q Consensus 626 ~~~~ 629 (721)
+...
T Consensus 450 dk~~ 453 (459)
T KOG0288|consen 450 DKQK 453 (459)
T ss_pred cCCc
Confidence 6644
No 119
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.30 E-value=1.7e-10 Score=108.86 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=194.9
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC------------Cce----EEeecccCCCCcccC
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK------------NKF----IELTRFVSPKTHHLN 374 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t------------g~~----~~l~~~~~~~~~~~~ 374 (721)
+...++.+...++..+||| ||..++. |+.+..|.++|++. |.. -.+..+.+|...+..
T Consensus 104 Et~ylt~HK~~cR~aafs~-DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSP-DGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred ceEEEeecccceeeeeeCC-CCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 3445666766778889999 9998877 56777899999871 110 122334455666788
Q ss_pred cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CC---cceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCC
Q 004971 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LP---DISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGS 449 (721)
Q Consensus 375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g 449 (721)
+.|.|....|+..+.++. +-+.++... .+ .+.......+.+.|+|.|.+|++. ....+.+||+++-
T Consensus 178 l~FHPre~ILiS~srD~t---------vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNT---------VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred eeecchhheEEeccCCCe---------EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 899999988887666655 333343221 11 112223345678999999999888 4778999999876
Q ss_pred ceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CC-CCCcceEEccC
Q 004971 450 NRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NG-KNNAFPSVSPD 521 (721)
Q Consensus 450 ~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~SpD 521 (721)
+.-.-. .+.+..+.+|+.|+..+..+ .++.++||+--.+. .++.+.. ++ ..+.+..|+.+
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-------kDG~IklwDGVS~r-----Cv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-------KDGAIKLWDGVSNR-----CVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEec-------cCCcEEeeccccHH-----HHHHHHhhcCCceeeeEEEccC
Confidence 532211 45788999999998766665 68999999854432 3444433 22 45677899999
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
||+|+.... +..+++|.+.+|+. +...+... .......|.-...+++|-.... ..+..||..++
T Consensus 317 ~kyiLsSG~---DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas------~slcsWdaRta 385 (430)
T KOG0640|consen 317 GKYILSSGK---DSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS------NSLCSWDARTA 385 (430)
T ss_pred CeEEeecCC---cceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceEEcccccc------Cceeeccccch
Confidence 999997776 77899999999985 55444321 1124567777777777766543 37999999888
Q ss_pred ceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..+.+...+|.+.+..+.-||.+--++..+.+-
T Consensus 386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred hhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 777777777888888999999998777666654
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=1.1e-10 Score=116.90 Aligned_cols=267 Identities=13% Similarity=0.083 Sum_probs=184.9
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eee--cccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELT--RFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~--~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.++..+..+.+|. ..++++. .. .+.|.+||+.....+ .+. .....+..++...++|||+.|++..+.
T Consensus 417 ~HGEvVcAvtIS~-~trhVyT--gG----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea--- 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYT--GG----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA--- 486 (705)
T ss_pred ccCcEEEEEEecC-CcceeEe--cC----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc---
Confidence 4455566677777 7777765 22 344999999643211 111 112235567889999999999986653
Q ss_pred CCCCCcceeEEEeccCCCCcceec----ccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce-EEEe--ecCceeeEE
Q 004971 394 TREDGNNQLLLENIKSPLPDISLF----RFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR-RQVY--FKNAFSTVW 464 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~ 464 (721)
..+-++|+..+...+... ...-..++.|||.+ ++|. +++.|.+||+..... +++. ......+..
T Consensus 487 ------stlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 487 ------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 347778887764433221 11223578899985 5555 699999999988764 4444 567889999
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
|+||.+|.... -++.++.|++... +++..++ ..+..+..+|.+.||++.-. +.++++...
T Consensus 560 s~dGtklWTGG-------lDntvRcWDlreg--------rqlqqhdF~SQIfSLg~cP~~dWlavGMe---ns~vevlh~ 621 (705)
T KOG0639|consen 560 SKDGTKLWTGG-------LDNTVRCWDLREG--------RQLQQHDFSSQIFSLGYCPTGDWLAVGME---NSNVEVLHT 621 (705)
T ss_pred cCCCceeecCC-------Cccceeehhhhhh--------hhhhhhhhhhhheecccCCCccceeeecc---cCcEEEEec
Confidence 99999998764 5788999988643 3444444 46778899999999999887 778888888
Q ss_pred CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l 622 (721)
.+.+ --++..+..-+-++.|++-|+|++.+..+. -|-.|..--|.. ++.......+.+...|-|.++|
T Consensus 622 skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDn-------lLnawrtPyGas--iFqskE~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 622 SKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN-------LLNAWRTPYGAS--IFQSKESSSVLSCDISFDDKYI 689 (705)
T ss_pred CCcc---ceeecccccEEEEEEecccCceeeecCchh-------hhhhccCccccc--eeeccccCcceeeeeccCceEE
Confidence 7655 566777777788999999999999888764 455555544422 2222233456666788899999
Q ss_pred EEEEecCC
Q 004971 623 VFTSDYGG 630 (721)
Q Consensus 623 ~~~~~~~~ 630 (721)
+..+.+..
T Consensus 690 VTGSGdkk 697 (705)
T KOG0639|consen 690 VTGSGDKK 697 (705)
T ss_pred EecCCCcc
Confidence 98887754
No 121
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.28 E-value=2.4e-10 Score=108.11 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=108.1
Q ss_pred CceeCcCCCEEEEEe-------------CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 423 FPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
.+.|+|+|++|++.. ...|+.++..+.....+. .+.+.+++|+|+|+.++++.. .....
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----~~~~~ 84 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----SMPAK 84 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----cCCcc
Confidence 368999999988761 245777777766655554 346899999999999988752 13457
Q ss_pred EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S 566 (721)
+.||++... ....+.. .....+.|||+|++|++++..+-...|.+||..+.+. +... .+ .....+.||
T Consensus 85 v~lyd~~~~------~i~~~~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~-~~-~~~t~~~Ws 152 (194)
T PF08662_consen 85 VTLYDVKGK------KIFSFGT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTF-EH-SDATDVEWS 152 (194)
T ss_pred cEEEcCccc------EeEeecC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eecc-cc-CcEEEEEEc
Confidence 888888521 3344432 3455689999999999987654456799999996552 3222 22 235789999
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
|||++|+.+..... ......+.+|+..+..
T Consensus 153 PdGr~~~ta~t~~r-~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 153 PDGRYLATATTSPR-LRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCCCEEEEEEeccc-eeccccEEEEEecCeE
Confidence 99999998875311 0123467788877643
No 122
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=2.1e-09 Score=108.47 Aligned_cols=270 Identities=16% Similarity=0.222 Sum_probs=161.9
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCCCCcce
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~~~~~~ 401 (721)
.+.||- |.+++|.... ..|+++++ ++...+.....-....+..+.|||.|. .|+|-.-... .......
T Consensus 136 ~~k~s~-~D~y~ARvv~------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~--~kpa~~~ 205 (561)
T COG5354 136 VLKFSI-DDKYVARVVG------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL--NKPAMVR 205 (561)
T ss_pred eeeeee-cchhhhhhcc------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccC--CCCcEEE
Confidence 456777 8888776532 23888887 554333221111134567889999754 3444332222 1222233
Q ss_pred eEEEeccCCCCcceecccCCCCceeCcCCCEEEEE------------eCCcEEEEECCCCceEEE-e-ecCceeeEEcCC
Q 004971 402 LLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV------------EFPGVYVVNSDGSNRRQV-Y-FKNAFSTVWDPV 467 (721)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~------------~~~~l~v~d~~~g~~~~l-~-~~~~~~~~~spd 467 (721)
++..........-+....+.-.+.|.+.|++|.+. +...||++++........ . .+.+.++.|+|+
T Consensus 206 i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~ 285 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL 285 (561)
T ss_pred EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc
Confidence 44444333333444555566678999999998776 246799999985554333 2 678999999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
++.+++++. .....+.++.+.. .++-. .....-..+.|||.++++++..-..-...+-+||..+.-.
T Consensus 286 S~~F~vi~g-----~~pa~~s~~~lr~-------Nl~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 286 SSRFAVISG-----YMPASVSVFDLRG-------NLRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred CCceeEEec-----ccccceeeccccc-------ceEEe-cCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 999999872 1233444544432 22222 2223445678999999999987665566888999985431
Q ss_pred cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
.+..+.. .......|||||+.+........ ......+-+||+.+.+.-.+ ..+.|.|.|++.-..+.
T Consensus 353 -~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k-~~~Dn~i~l~~v~g~~~fel---------~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 353 -VAGAFNG--LNTSYCDWSPDGQFYDTDTTSEK-LRVDNSIKLWDVYGAKVFEL---------TNITWDPSGQYVTTSSS 419 (561)
T ss_pred -EEEEeec--CCceEeeccCCceEEEecCCCcc-cccCcceEEEEecCchhhhh---------hhccccCCcccceeecc
Confidence 1212221 12245689999997766544321 12345788888877544333 34678888887655554
Q ss_pred cC
Q 004971 628 YG 629 (721)
Q Consensus 628 ~~ 629 (721)
..
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 43
No 123
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=2.1e-09 Score=108.49 Aligned_cols=314 Identities=16% Similarity=0.121 Sum_probs=199.9
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC---
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--- 394 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--- 394 (721)
..+.+...++|| .|.++++.... .|.+|.-.... .+.... ...+....|||.+++|..-.......
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~------~V~~~~g~~~~--~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAA------GVECWGGPSKA--KLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred cCcchhheeecC-cchheehhhcc------ceEEccccchh--heeeee--cCCceecccCcccceeeeeccCCccChhh
Confidence 455667889999 99998874322 38888766554 333322 33466788999999998765544311
Q ss_pred ---CCCCcceeEEEeccCCCCcc----eecccCCC-CceeCcCCCEEEEEeCCcEEEEECCCCceEEE-----eecCcee
Q 004971 395 ---REDGNNQLLLENIKSPLPDI----SLFRFDGS-FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV-----YFKNAFS 461 (721)
Q Consensus 395 ---~~~~~~~l~~~~~~~~~~~~----~~~~~~~~-~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l-----~~~~~~~ 461 (721)
......++.++++.++.--. ...+..+. .+.||-|.+++|.+....|+++++ ++...+. ....+..
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceee
Confidence 11111357777777662100 00111122 468899999998888889999997 4443222 2567889
Q ss_pred eEEcCCC--CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-------
Q 004971 462 TVWDPVR--EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT------- 532 (721)
Q Consensus 462 ~~~spdg--~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~------- 532 (721)
+.|||.| ..|++-.. +.......+.||.+..+. .+..-+........+.|.+.|++|++...+.
T Consensus 179 FsisP~~n~~~la~~tP--Ek~~kpa~~~i~sIp~~s-----~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 179 FSISPEGNHDELAYWTP--EKLNKPAMVRILSIPKNS-----VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred EEecCCCCCceEEEEcc--ccCCCCcEEEEEEccCCC-----eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence 9999964 44555542 222346778899888543 2222222223445689999999999876542
Q ss_pred -CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971 533 -GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611 (721)
Q Consensus 533 -g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 611 (721)
|...||++++..... .....-...+....|+|+++.+++.+.-. ...+-.+|+.+. ++-.. ....-.
T Consensus 252 fgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----pa~~s~~~lr~N-l~~~~---Pe~~rN 319 (561)
T COG5354 252 FGESNLYLLRITERSI---PVEKDLKDPVHDFTWEPLSSRFAVISGYM-----PASVSVFDLRGN-LRFYF---PEQKRN 319 (561)
T ss_pred eccceEEEEeeccccc---ceeccccccceeeeecccCCceeEEeccc-----ccceeecccccc-eEEec---CCcccc
Confidence 456899999985542 22213345678999999999999988542 347888898876 33332 344567
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
.+.|||.+++++++..++.. +++-++|..+....-=+-.+..-.-..|||+
T Consensus 320 T~~fsp~~r~il~agF~nl~--------------gni~i~~~~~rf~~~~~~~~~n~s~~~wspd 370 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQ--------------GNIEIFDPAGRFKVAGAFNGLNTSYCDWSPD 370 (561)
T ss_pred cccccCcccEEEEecCCccc--------------cceEEeccCCceEEEEEeecCCceEeeccCC
Confidence 78999999999998776542 3577888776533221111222344678885
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.27 E-value=1e-09 Score=101.78 Aligned_cols=276 Identities=13% Similarity=0.062 Sum_probs=183.8
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
+..+.+|...+..+.+.. +|+.|.. .. .+...-+|--.+|+ .|....+|.+.++++.++-+.++++..+.+.
T Consensus 3 pi~l~GHERplTqiKyN~-eGDLlFs-ca----KD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNR-EGDLLFS-CA----KDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred ccccccCccccceEEecC-CCcEEEE-ec----CCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccc
Confidence 344556666677888888 9986544 22 23345677666777 7777788899999999999999999877666
Q ss_pred CCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe------CCcEEEEECC-------CCc-eEEEe-
Q 004971 392 GSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVNSD-------GSN-RRQVY- 455 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~------~~~l~v~d~~-------~g~-~~~l~- 455 (721)
. +.+++...+.. .....+..+....|+++|..+++.. ...|.++|+. +.+ ...|.
T Consensus 75 t---------~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 75 T---------AKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred e---------eEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 5 34455554422 1222334456678999999888873 3567888876 233 23333
Q ss_pred -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534 (721)
Q Consensus 456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~ 534 (721)
...+....|+|-++.|+..- +++.+.+|++..... .+.....+...+..+.+|||..+++..+. +
T Consensus 146 ~~skit~a~Wg~l~~~ii~Gh-------e~G~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---D 211 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGH-------EDGSISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSK---D 211 (327)
T ss_pred CccceeeeeecccCCEEEEec-------CCCcEEEEEcccCce----eeechhhhccccccccccCCcceEEeccc---C
Confidence 55678899999999999875 678999998875431 22333345567888999999999998887 6
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE-----ee------e
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK-----LI------Q 603 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----l~------~ 603 (721)
..-.++|..+-+. ++.... ...++..+++|--.+++...... -..+-.-+...|+-.. ++ -
T Consensus 212 ttakl~D~~tl~v--~Kty~t-e~PvN~aaisP~~d~VilgGGqe-----A~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 212 TTAKLVDVRTLEV--LKTYTT-ERPVNTAAISPLLDHVILGGGQE-----AMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred ccceeeeccceee--EEEeee-cccccceecccccceEEecCCce-----eeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 7788889887553 333332 33457889999888888776652 1233322222232110 00 0
Q ss_pred cCCCCCcCCeEECCCCCEEEEEE
Q 004971 604 SGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 604 ~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
.+|-+.++.++|+|||+......
T Consensus 284 kGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred cccccCcceeEECCCCcccccCC
Confidence 13778899999999999654433
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.26 E-value=8.1e-09 Score=107.99 Aligned_cols=213 Identities=8% Similarity=0.039 Sum_probs=142.9
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe--ecCceeeEEcCC--C-CeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPV--R-EAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spd--g-~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
.+++||||++||... .+.|.++++..-+. ..+. ...+..+.||.- + +.||..+ .+.-++||++..+
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-------rdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-------RDRLIHVYDVKRN 536 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-------CCceEEEEecccc
Confidence 468999999999984 67899999875442 1222 445556666532 2 3333333 4667888887765
Q ss_pred CCCCccceEEcccCCCCCcceEEccCC--CEEEEEEeeCCceeEE-EEECCCCcccceEECc-----CCCcCceeeEEcc
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDG--KWIVFRSTRTGYKNLY-IMDAEGGEGYGLHRLT-----EGPWSDTMCNWSP 567 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg--~~l~~~s~~~g~~~l~-~~d~~~g~~~~~~~l~-----~~~~~~~~~~~Sp 567 (721)
-. ....|..+...+..+.|.-.| .+++.... +..|+ +..-..+. ....+ ........++..|
T Consensus 537 y~----l~qtld~HSssITsvKFa~~gln~~MiscGA---DksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 537 YD----LVQTLDGHSSSITSVKFACNGLNRKMISCGA---DKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred cc----hhhhhcccccceeEEEEeecCCceEEEeccC---chhhheehhccccC---ceeccccccccccceEEEeeeCC
Confidence 43 555666766677778887766 33333322 22222 22221121 11111 1233457889999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
..++++....+. .|.++++.+|+.++.+... +.+..--+...|.|-||+....+.+
T Consensus 607 ~~k~v~t~cQDr-------nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt--------------- 664 (1080)
T KOG1408|consen 607 TSKLVVTVCQDR-------NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT--------------- 664 (1080)
T ss_pred CcceEEEEeccc-------ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc---------------
Confidence 999999888774 8999999999998888642 2344455788999999998887764
Q ss_pred ccEEEEEcCCCCe-EEeccCCCCCCCceecCC
Q 004971 646 GEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 646 ~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~ 676 (721)
|-++|.-+|+. .+.+.|...+....|+++
T Consensus 665 --l~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 665 --LCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred --eEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 88899888874 699999999999999984
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.26 E-value=1.9e-10 Score=115.24 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=173.3
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--CCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..|...+.+| ....|.+.||.+..++.. ....++.- .+..++...++| ||+.|+. |++...|-
T Consensus 426 tIS~~trhVy---TgGkgcVKVWdis~pg~k------~PvsqLdcl~rdnyiRSckL~p-dgrtLiv-----GGeastls 490 (705)
T KOG0639|consen 426 TISNPTRHVY---TGGKGCVKVWDISQPGNK------SPVSQLDCLNRDNYIRSCKLLP-DGRTLIV-----GGEASTLS 490 (705)
T ss_pred EecCCcceeE---ecCCCeEEEeeccCCCCC------CccccccccCcccceeeeEecC-CCceEEe-----ccccceee
Confidence 3444434444 233688899987665433 11222221 244677889999 9999988 45567799
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCc
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSP 428 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~Sp 428 (721)
+||+++...+.-............++.|||.+..+....++. |.++|+... ...+....-....+.+|+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGn---------I~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc---------EEEEEcccceeeecccCCCCCceeEEecC
Confidence 999998765433322222334566889999976655444444 556666543 223333333445678999
Q ss_pred CCCEEEEEe-CCcEEEEECCCCce-EEE-eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 429 KGDRIAFVE-FPGVYVVNSDGSNR-RQV-YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 429 DG~~la~~~-~~~l~v~d~~~g~~-~~l-~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
||.+|...+ +..+.-||+..+.. .+- +...++++.+.|.+.+|++.. .+++ ++.+...+. ...+
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM-------ens~--vevlh~skp----~kyq 628 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM-------ENSN--VEVLHTSKP----EKYQ 628 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec-------ccCc--EEEEecCCc----ccee
Confidence 999888775 88999999987653 222 256788999999999999986 2344 444554443 5567
Q ss_pred cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
|..++..+..+.|++-|+|++.... ++-|-.|..--|.. +.+..+. ..+.....|-|.++|+.++.+
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGk---DnlLnawrtPyGas--iFqskE~-SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGK---DNLLNAWRTPYGAS--IFQSKES-SSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred ecccccEEEEEEecccCceeeecCc---hhhhhhccCccccc--eeecccc-CcceeeeeccCceEEEecCCC
Confidence 7778778889999999999998775 55555665544542 4444443 345677889999999988876
No 127
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.25 E-value=2.7e-10 Score=104.52 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=174.6
Q ss_pred CCCcccCceee---cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 318 PGLHAFTPATS---PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 318 ~~~~~~~~~~s---p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+...+..++|| | +|-+|+.++.+ +.-.+.+-++|. -+..+++|.+.++...+..+..+.+....+-.
T Consensus 13 htrpvvdl~~s~itp-~g~flisa~kd-----~~pmlr~g~tgd--wigtfeghkgavw~~~l~~na~~aasaaadft-- 82 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITP-DGYFLISASKD-----GKPMLRNGDTGD--WIGTFEGHKGAVWSATLNKNATRAASAAADFT-- 82 (334)
T ss_pred CCcceeEEeccCCCC-CceEEEEeccC-----CCchhccCCCCC--cEEeeeccCcceeeeecCchhhhhhhhcccch--
Confidence 33344455554 5 77555554322 223456667776 55666777777766666666555444333333
Q ss_pred CCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe--ecCceeeEEcCCCC
Q 004971 395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVRE 469 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg~ 469 (721)
..+|-.- .+....-.....-+...+|+.|.++|+..+ ..-|.++|++..+ +..+. .+.+..+-|-...+
T Consensus 83 -----akvw~a~-tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 83 -----AKVWDAV-TGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred -----hhhhhhh-hhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 2222211 111111111223345679999999888875 4557778876554 33444 56788888877777
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
.|+..+ +++.+++|+..... .+..|.... .+.++.+|+||+.|..+. ...|..||..+=.
T Consensus 157 ~iLSSa-------dd~tVRLWD~rTgt-----~v~sL~~~s-~VtSlEvs~dG~ilTia~----gssV~Fwdaksf~--- 216 (334)
T KOG0278|consen 157 CILSSA-------DDKTVRLWDHRTGT-----EVQSLEFNS-PVTSLEVSQDGRILTIAY----GSSVKFWDAKSFG--- 216 (334)
T ss_pred eEEeec-------cCCceEEEEeccCc-----EEEEEecCC-CCcceeeccCCCEEEEec----CceeEEecccccc---
Confidence 777654 57899999998765 455554433 678899999999887766 4678899988655
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+..-...+..+.+.+++|+-..++.+..+ ..+|.||-.+|+.+.....++.+.+..+.|||||...+..+.++
T Consensus 217 ~lKs~k~P~nV~SASL~P~k~~fVaGged-------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKKEFFVAGGED-------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ceeeccCccccccccccCCCceEEecCcc-------eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 22223345566788999998655555555 38999999999877765445788899999999999777666666
Q ss_pred C
Q 004971 630 G 630 (721)
Q Consensus 630 ~ 630 (721)
+
T Consensus 290 T 290 (334)
T KOG0278|consen 290 T 290 (334)
T ss_pred e
Confidence 4
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.25 E-value=1.1e-09 Score=108.14 Aligned_cols=254 Identities=11% Similarity=0.072 Sum_probs=175.1
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 422 (721)
|+.+..+.++|..+++ .+..+.++...+....++|+...++..+.+.. ..+|...+......+......+.
T Consensus 237 GG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~-------i~vws~~~~s~~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEI-------IRVWSVPLSSEPTSSRPHEEPVT 307 (506)
T ss_pred cCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcce-------EEeeccccccCccccccccccce
Confidence 4456568899988876 44455677777888899999887776655444 33444433333333333444566
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
++..+|.|.+++..+ ++.....|+.++... .+.. -.....+|.|||-.+.... .++.++||++....
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt-------~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT-------PDGVVKIWDLKSQT 380 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC-------CCceEEEEEcCCcc
Confidence 788899999999886 444555667766532 2221 2467899999997766554 57899999998765
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEE
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~ 575 (721)
...++..+.+.+..++|+-+|-||++..+ +..+.+||+..-+. ...+... ...+..+.|.+.|++|+..
T Consensus 381 -----~~a~Fpght~~vk~i~FsENGY~Lat~ad---d~~V~lwDLRKl~n--~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 381 -----NVAKFPGHTGPVKAISFSENGYWLATAAD---DGSVKLWDLRKLKN--FKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred -----ccccCCCCCCceeEEEeccCceEEEEEec---CCeEEEEEehhhcc--cceeeccccccceeEEEcCCCCeEEee
Confidence 56677777788999999999999999997 66699999986543 3333322 2346789999999999988
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+.+ -+||+++-.+..-+.+... .+.+....+.|..+-++++..+.+.
T Consensus 451 g~~-------l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 451 GSD-------LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred cce-------eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 655 3777777555544333211 1445667788888888877766654
No 129
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.25 E-value=9.8e-09 Score=110.80 Aligned_cols=264 Identities=15% Similarity=0.155 Sum_probs=168.2
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcce
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQ 401 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~ 401 (721)
...+|| ||++++|.....|++...|+++|+++|+...-. +. ......+.|++|++.++|...+.... ......+
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 567899 999999999998999999999999999743211 11 11222389999999999988766422 0111267
Q ss_pred eEEEeccCCCCc-ceeccc-C-CC---CceeCcCCCEEEEE----eC-CcEEEEECCCC-----ceEEEeec-CceeeEE
Q 004971 402 LLLENIKSPLPD-ISLFRF-D-GS---FPSFSPKGDRIAFV----EF-PGVYVVNSDGS-----NRRQVYFK-NAFSTVW 464 (721)
Q Consensus 402 l~~~~~~~~~~~-~~~~~~-~-~~---~~~~SpDG~~la~~----~~-~~l~v~d~~~g-----~~~~l~~~-~~~~~~~ 464 (721)
++.+.+.++... ...+.. . .. .+..|+||++|++. .. ..+++.++..+ ..+.+... .......
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888776443 222211 1 11 35679999998776 23 67999999875 45666532 2222223
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE- 543 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~- 543 (721)
...|..+++.++ .......|+.++++..........+..+.....--.++..+++|++....++..+|+++++.
T Consensus 284 ~~~~~~~yi~Tn-----~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 284 DHHGDRLYILTN-----DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEETTEEEEEE------TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred EccCCEEEEeeC-----CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence 333777777765 24567888888887642111222444444333445667778999999988889999999999
Q ss_pred CCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 544 GGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 544 ~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
+.. ...+.. ..+.+......+++..+.|..... .....+|.+|+.+++...+.
T Consensus 359 ~~~---~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 359 GKE---SREIPLPEAGSVSGVSGDFDSDELRFSYSSF---TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TEE---EEEEESSSSSEEEEEES-TT-SEEEEEEEET---TEEEEEEEEETTTTCEEEEE
T ss_pred CcE---EeeecCCcceEEeccCCCCCCCEEEEEEeCC---CCCCEEEEEECCCCCEEEEE
Confidence 444 333332 223345556667888888877654 35679999999999887764
No 130
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.7e-08 Score=99.99 Aligned_cols=373 Identities=12% Similarity=0.087 Sum_probs=210.2
Q ss_pred CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEE
Q 004971 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL 255 (721)
Q Consensus 176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d 255 (721)
-++++..+++.. .++|.++. ..+...+..|.......+..|.--++..++++-. -.+|.|+
T Consensus 67 knWiv~GsDD~~--------IrVfnynt-~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~----------iKlW~we 127 (794)
T KOG0276|consen 67 KNWIVTGSDDMQ--------IRVFNYNT-GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMT----------IKLWDWE 127 (794)
T ss_pred cceEEEecCCce--------EEEEeccc-ceeeEEeeccccceeeeeecCCCCeEEecCCccE----------EEEeecc
Confidence 567777666641 46666652 3456677677777777789998889988775543 4455544
Q ss_pred cCCCceeEEEe-ccCC---cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecC
Q 004971 256 TRDGTQRVKIV-ENGG---WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPG 330 (721)
Q Consensus 256 ~~~g~~~~l~~-~~~~---~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 330 (721)
.+-...-++ .... ..+|.|... .+.+ ..-|.++.+|.+..+. ....+.+|...+..+.+-+
T Consensus 128 --~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS--~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~- 193 (794)
T KOG0276|consen 128 --NEWACEQTFEGHEHYVMQVAFNPKDPNTFAS--ASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYT- 193 (794)
T ss_pred --CceeeeeEEcCcceEEEEEEecCCCccceee--eeccccEEEEEcCCCC---------CceeeeccccCcceEEecc-
Confidence 333222222 2222 347887644 3342 2337899999765554 3445556666677777777
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC------------C
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED------------G 398 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~------------~ 398 (721)
.|+.=+..+ |.++..|.+||.++... +..+++|...+....|.|.=..|+..++++..+.|. +
T Consensus 194 ~gdkpylIs---gaDD~tiKvWDyQtk~C--V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g 268 (794)
T KOG0276|consen 194 GGDKPYLIS---GADDLTIKVWDYQTKSC--VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG 268 (794)
T ss_pred CCCcceEEe---cCCCceEEEeecchHHH--HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence 564333332 56788899999998874 344466677777788888877777777776632111 0
Q ss_pred cceeEEEeccCCCCccee--------cccCCCCc--eeCcCCCEEEEEeCCcEEEEECCC---------CceEEEe----
Q 004971 399 NNQLLLENIKSPLPDISL--------FRFDGSFP--SFSPKGDRIAFVEFPGVYVVNSDG---------SNRRQVY---- 455 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~--------~~~~~~~~--~~SpDG~~la~~~~~~l~v~d~~~---------g~~~~l~---- 455 (721)
..++|-.....+...+.. ....-..| ..++.| +|++...+.|...++.+ |+...+.
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~g-KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeL 347 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNG-KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKEL 347 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCc-cEEEEcCceeeeeeceeccCcccccCCccccchhhhc
Confidence 012222111011111110 00111123 334445 36666555555555432 2222222
Q ss_pred ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEee
Q 004971 456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
.-.+..++-||+|+.++++. +++..||.-=. +.. .-+....+.|++|....++...
T Consensus 348 gs~eiyPq~L~hsPNGrfV~Vcg--------dGEyiIyTala-----------~RnK~fG~~~eFvw~~dsne~avRes- 407 (794)
T KOG0276|consen 348 GSVEIYPQTLAHSPNGRFVVVCG--------DGEYIIYTALA-----------LRNKAFGSGLEFVWAADSNEFAVRES- 407 (794)
T ss_pred cccccchHHhccCCCCcEEEEec--------CccEEEEEeee-----------hhhcccccceeEEEcCCCCeEEEEec-
Confidence 11234678899999999875 56677765211 111 1134566899999776666643
Q ss_pred CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 611 (721)
...|.++ .+.+. .+.+... .. ..-.|+ |..|.+.+.+ .++.||-++++..+-.. ....
T Consensus 408 --~~~vki~--knfke--~ksi~~~-~~-~e~i~g--g~Llg~~ss~--------~~~fydW~~~~lVrrI~----v~~k 465 (794)
T KOG0276|consen 408 --NGNVKIF--KNFKE--HKSIRPD-MS-AEGIFG--GPLLGVRSSD--------FLCFYDWESGELVRRIE----VTSK 465 (794)
T ss_pred --CCceEEE--eccee--ccccccc-cc-eeeecC--CceEEEEeCC--------eEEEEEcccceEEEEEe----eccc
Confidence 4455555 22321 2223221 11 112232 5556666655 68888988887665443 2456
Q ss_pred CeEECCCCCEEEEEEecC
Q 004971 612 HPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~ 629 (721)
++.|+-||..++..+.++
T Consensus 466 ~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 466 HVYWSDNGELVAIAGDDS 483 (794)
T ss_pred eeEEecCCCEEEEEecCc
Confidence 799999999888877765
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.23 E-value=5.1e-08 Score=98.37 Aligned_cols=413 Identities=13% Similarity=0.153 Sum_probs=223.5
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
-| .|+.++|+..- ..+|.++ ....+-...|........++||--++|.....+.. .+ .....
T Consensus 74 lp--tgE~vyfvA~V----------~Vl~n~e--e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~-g~---~~~ph 135 (626)
T KOG2106|consen 74 LP--TGELVYFVAAV----------GVLYNWE--ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS-GR---PLQPH 135 (626)
T ss_pred cc--CccEEEEeccE----------EEEEeeh--hhhcccccCCCCceEEEeecCCceeeccCcccccC-CC---cCCCe
Confidence 67 78888887543 2566553 22222233444444444789987777753322210 01 12356
Q ss_pred EEEEEcCCCceeEEEe--ccC-CcceeccC--CeEEEEeccCC-CCcEEEEEEecCCCcceeccccceEEeCCCCCcccC
Q 004971 251 IYIFLTRDGTQRVKIV--ENG-GWPCWVDE--STLFFHRKSEE-DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT 324 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~--~~~-~~~~ws~d--g~l~~~~~~~~-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (721)
+.+||..+-....+.. +.+ ...+||+- |.++.. .++. +....+|+= ..+. +.-.+......+..
T Consensus 136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~-vD~s~~h~lSVWdW-qk~~--------~~~~vk~sne~v~~ 205 (626)
T KOG2106|consen 136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA-VDDSNPHMLSVWDW-QKKA--------KLGPVKTSNEVVFL 205 (626)
T ss_pred eeecccccceeeeeeccccccceeeeecccCCCceEEE-ecCCCccccchhhc-hhhh--------ccCcceeccceEEE
Confidence 7777754433322321 222 14578843 333332 2321 233355521 1110 11222222334567
Q ss_pred ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l 402 (721)
..|.| .+..+.... . .+.|+.|+++++...+-. .++.+ ...+.++.|.++|+.|- .+ .+ ..+
T Consensus 206 a~FHP-td~nliit~-G----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT--gD-S~-------G~i 269 (626)
T KOG2106|consen 206 ATFHP-TDPNLIITC-G----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT--GD-SG-------GNI 269 (626)
T ss_pred EEecc-CCCcEEEEe-C----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe--ec-CC-------ceE
Confidence 78999 665555432 2 245999999988643321 12221 24477889999998652 22 22 235
Q ss_pred EEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEe
Q 004971 403 LLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 403 ~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~ 475 (721)
.++...+. .+++...+.....+..-.||..|. . .+..|..||-+=.+.+.+. .+.++.++ +.+.-|++..
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~--e~~~di~vGT 346 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA--EGKGDILVGT 346 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe--cCCCcEEEee
Confidence 55554332 111122233334455566775544 4 3667888884333333332 22333322 2222254443
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~ 555 (721)
. ...|..-.+... -......+......++..|+...++..+. +.++.+|+ ..++ .-..+..
T Consensus 347 t---------rN~iL~Gt~~~~----f~~~v~gh~delwgla~hps~~q~~T~gq---dk~v~lW~--~~k~-~wt~~~~ 407 (626)
T KOG2106|consen 347 T---------RNFILQGTLENG----FTLTVQGHGDELWGLATHPSKNQLLTCGQ---DKHVRLWN--DHKL-EWTKIIE 407 (626)
T ss_pred c---------cceEEEeeecCC----ceEEEEecccceeeEEcCCChhheeeccC---cceEEEcc--CCce-eEEEEec
Confidence 1 122332233221 11222233346678899999998888876 78899998 2231 1233333
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 635 (721)
.+ .....|.|.| .|+.+...+ ..+++|..+.....+-. .......+.|||||.+|+..+.++-.
T Consensus 408 d~--~~~~~fhpsg-~va~Gt~~G-------~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~i---- 471 (626)
T KOG2106|consen 408 DP--AECADFHPSG-VVAVGTATG-------RWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHI---- 471 (626)
T ss_pred Cc--eeEeeccCcc-eEEEeeccc-------eEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeE----
Confidence 32 3678999999 888888775 78999998866555543 25567889999999999999988743
Q ss_pred CCCCCCCCCCccEEEEEcCCCCeEEeccCC-CCCCCceecCC
Q 004971 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNS-FEDGTPAWGPR 676 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~-~~~~~~~~sp~ 676 (721)
-||.++.++.+..++-... ....+..||++
T Consensus 472 -----------yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 472 -----------YIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred -----------EEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 2666666666655555433 34567889986
No 132
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=3.9e-10 Score=108.96 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=175.1
Q ss_pred eccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEE
Q 004971 274 WVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFD 353 (721)
Q Consensus 274 ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~d 353 (721)
+.|+-.+.+ ...+++.+.+|+..... -..-+-++.-.+..+.|+. .|++|+..+ .+..+.+||
T Consensus 116 ~hp~~~~v~--~as~d~tikv~D~~tg~---------~e~~LrGHt~sv~di~~~a-~Gk~l~tcS-----sDl~~~LWd 178 (406)
T KOG0295|consen 116 FHPSEALVV--SASEDATIKVFDTETGE---------LERSLRGHTDSVFDISFDA-SGKYLATCS-----SDLSAKLWD 178 (406)
T ss_pred eccCceEEE--EecCCceEEEEEccchh---------hhhhhhccccceeEEEEec-CccEEEecC-----Cccchhhee
Confidence 445644544 23347788787432221 2222334444577889998 998887743 334488999
Q ss_pred CCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCC
Q 004971 354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGD 431 (721)
Q Consensus 354 l~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~ 431 (721)
.++- ...+....++...+..+.|-|-|.+|+..+.+... ..+++..+ ...+...+.-.+.++.+.||.
T Consensus 179 ~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti---------k~We~~tg~cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 179 FDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI---------KAWECDTGYCVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred HHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccce---------eEEecccceeEEeccCchHhEEEEEecCCee
Confidence 8763 22344344556677889999999999988777763 33343333 222222233345578889998
Q ss_pred EEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCC---------------CeEEEEecCCCCCCCCCcEEEEEE
Q 004971 432 RIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVR---------------EAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 432 ~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg---------------~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
.+|..+ +..|.+|-+.++..+.+. ...+..++|.|.. +.+... ..++.+++|++
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~-------SrDktIk~wdv 321 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG-------SRDKTIKIWDV 321 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee-------cccceEEEEec
Confidence 888774 778999999888433222 2233344444322 233333 35789999999
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l 572 (721)
.+.. .+-.|..+...+...+|+|.|++|+...+ +..|.+||+.+++. ++.+..++..+..+.|..+--++
T Consensus 322 ~tg~-----cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 322 STGM-----CLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred cCCe-----EEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEEecccee--eeccCCCcceeEEEecCCCCceE
Confidence 8854 67788888888999999999999999887 88999999998886 77777777777888888777666
Q ss_pred EEEEcc
Q 004971 573 AFASDR 578 (721)
Q Consensus 573 ~~~~~~ 578 (721)
+.++-+
T Consensus 392 vTGsVd 397 (406)
T KOG0295|consen 392 VTGSVD 397 (406)
T ss_pred Eecccc
Confidence 666554
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.4e-09 Score=101.57 Aligned_cols=267 Identities=12% Similarity=0.111 Sum_probs=168.6
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
.....||+ -|.+||... .++++.+||+.|-....+ +..|-..+.+++||+||+.|+..+.+..
T Consensus 26 a~~~~Fs~-~G~~lAvGc-----~nG~vvI~D~~T~~iar~--lsaH~~pi~sl~WS~dgr~LltsS~D~s--------- 88 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGC-----ANGRVVIYDFDTFRIARM--LSAHVRPITSLCWSRDGRKLLTSSRDWS--------- 88 (405)
T ss_pred cceEEecc-Ccceeeeec-----cCCcEEEEEccccchhhh--hhccccceeEEEecCCCCEeeeecCCce---------
Confidence 56788999 999999843 556699999998763222 3445556788999999999998776665
Q ss_pred eEEEeccCCC-CcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeec-------CceeeEEcCCCCeE
Q 004971 402 LLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-------NAFSTVWDPVREAV 471 (721)
Q Consensus 402 l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~-------~~~~~~~spdg~~l 471 (721)
+.++++..+. ..-..+........|+|-.+..+++ -+..-++.++..+..+.|... ......|.+.|+++
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 4555654442 1112233445567888866554444 355567777766665555511 12234588899999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC----Ccc
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG----GEG 547 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~----g~~ 547 (721)
+... ..+.+.+|+...-.- ....+++.. ..+.+..++..|++|++.+. ++-|+.|++.. |+.
T Consensus 169 itGt-------sKGkllv~~a~t~e~---vas~rits~-~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 169 ITGT-------SKGKLLVYDAETLEC---VASFRITSV-QAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EEec-------CcceEEEEecchhee---eeeeeechh-eeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCcc
Confidence 8875 456677766554320 111223321 35667899999999999887 77788887641 110
Q ss_pred cceEECcC-----CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971 548 YGLHRLTE-----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 548 ~~~~~l~~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l 622 (721)
..+..... +...-....||-||.+|+.++... -.||+|.-..|.+.++.....+...-.+.|.|-.-.|
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc------eeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence 00111100 011124578999999998877553 3899999999999888753222344567788865544
Q ss_pred EEE
Q 004971 623 VFT 625 (721)
Q Consensus 623 ~~~ 625 (721)
+..
T Consensus 309 ~si 311 (405)
T KOG1273|consen 309 ASI 311 (405)
T ss_pred eec
Confidence 433
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5e-09 Score=99.51 Aligned_cols=257 Identities=12% Similarity=0.068 Sum_probs=164.6
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG 448 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~ 448 (721)
..+..||+.|.+|+....++. +.++++.+- ...+.........++||+||+.|...+ +..+.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~---------vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGR---------VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCc---------EEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 457899999999998766555 455555432 222222223345689999999998885 78899999987
Q ss_pred Cce-EEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCc---ceEEccC
Q 004971 449 SNR-RQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNA---FPSVSPD 521 (721)
Q Consensus 449 g~~-~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~SpD 521 (721)
|.+ +++. +..+....|.|-.+..++++. -+....+..++.. ....|.... .... ...|.+-
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~------~~~sp~vi~~s~~------~h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATI------MEESPVVIDFSDP------KHSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEE------ecCCcEEEEecCC------ceeeccCCCccccccccccccccCC
Confidence 774 4444 778889999997776666652 1222333333321 333443332 1222 2358899
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC------
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG------ 595 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~------ 595 (721)
|++|+.... .+.|.++|..+-+...-.+++. ...+.++.++-.|+.|++-..+. .|..|++..
T Consensus 165 g~yIitGts---KGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-------vIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 165 GKYIITGTS---KGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-------VIRTYEISDIDDEGR 233 (405)
T ss_pred CCEEEEecC---cceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-------eEEEEehhhhcccCc
Confidence 999998876 6789999988766422223332 23457889999999999988774 788887641
Q ss_pred -CceEEeee---cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCC--CC
Q 004971 596 -TGLRKLIQ---SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE--DG 669 (721)
Q Consensus 596 -~~~~~l~~---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~--~~ 669 (721)
+++...-. .-..-.-....||.||.|++..+.+.. .||+|....|.+.++-.+..+ -.
T Consensus 234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aH----------------aLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAH----------------ALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccce----------------eEEEEecCCcceeeeecCCchhhee
Confidence 11111000 000112245789999999987775443 499999988988766654432 24
Q ss_pred CceecCC
Q 004971 670 TPAWGPR 676 (721)
Q Consensus 670 ~~~~sp~ 676 (721)
+..|.|.
T Consensus 298 DV~whp~ 304 (405)
T KOG1273|consen 298 DVNWHPV 304 (405)
T ss_pred ecccccc
Confidence 5778885
No 135
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=6.3e-08 Score=99.32 Aligned_cols=312 Identities=15% Similarity=0.167 Sum_probs=195.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-CCCCc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-REDGN 399 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~~~~ 399 (721)
.+...++|+ +|+.++|... ..+++++..++. ..+... ......+.|||-|.+|..-....... .....
T Consensus 36 ~~~v~~~S~-~G~lfA~~~~------~~v~i~~~~~~~-~~lt~~---~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~ 104 (566)
T KOG2315|consen 36 PCNVFAYSN-NGRLFAYSDN------QVVKVFEIATLK-VVLCVE---LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASN 104 (566)
T ss_pred cceeEEEcC-CCcEEEEEcC------CeEEEEEccCCc-EEEEec---cceeeeeeecccccccccccccccccCCCCCC
Confidence 356778999 9999998542 238899988875 233322 22667889999999886532211111 11111
Q ss_pred ceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEeecCceeeEEcCCCCeEEEEe
Q 004971 400 NQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVYFKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 400 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~spdg~~la~~~ 475 (721)
..+.+++..+... .+..-...+..+.||+|....+....+.++.+++.+-. ...|....+..+.+||-+..-.++.
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred CceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence 3344444443211 11111122357899999987777788899999987633 2344466788899998765444433
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeC---------CceeEEEEECC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRT---------GYKNLYIMDAE 543 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~---------g~~~l~~~d~~ 543 (721)
.-+.-......++||.+...+. -..+.... ..-..+.|.+-|.-|++....+ |...||+++.+
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~-----~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQ-----HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred EccCCCCCCcEEEEeccccccc-----cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 3333334456788888874331 11121111 1223468998888777664321 56789999998
Q ss_pred CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
+.+. ...|. ..+.+.++.|+|+|+.+++...-. ...+-++|+.+.-...+ ..+.-+.+.|+|.|++|+
T Consensus 260 g~s~--~V~L~-k~GPVhdv~W~~s~~EF~VvyGfM-----PAkvtifnlr~~~v~df----~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 260 GESV--SVPLL-KEGPVHDVTWSPSGREFAVVYGFM-----PAKVTIFNLRGKPVFDF----PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred CceE--EEecC-CCCCceEEEECCCCCEEEEEEecc-----cceEEEEcCCCCEeEeC----CCCCccceEECCCCCEEE
Confidence 4442 44444 345678999999999998888653 34888999877432222 456678899999999999
Q ss_pred EEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCC-CCCceecCC
Q 004971 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE-DGTPAWGPR 676 (721)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~-~~~~~~sp~ 676 (721)
+++..+- .+++-+||..+ .+.|...... -.-..|+|+
T Consensus 328 lAGFGNL--------------~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~Pd 365 (566)
T KOG2315|consen 328 LAGFGNL--------------PGDMEVWDVPN--RKLIAKFKAANTTVFEWSPD 365 (566)
T ss_pred EeecCCC--------------CCceEEEeccc--hhhccccccCCceEEEEcCC
Confidence 9887652 35799999877 3344443322 245799997
No 136
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.16 E-value=5.4e-10 Score=109.73 Aligned_cols=261 Identities=13% Similarity=0.093 Sum_probs=161.9
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
..|.++...+++ ...+..+.+|.+...... ....+.+....+..+.+.+ ++++++..++ +..+++
T Consensus 181 v~~l~~sdtlat--gg~Dr~Ik~W~v~~~k~~-------~~~tLaGs~g~it~~d~d~-~~~~~iAas~-----d~~~r~ 245 (459)
T KOG0288|consen 181 VEFLRNSDTLAT--GGSDRIIKLWNVLGEKSE-------LISTLAGSLGNITSIDFDS-DNKHVIAASN-----DKNLRL 245 (459)
T ss_pred eEEccCcchhhh--cchhhhhhhhhcccchhh-------hhhhhhccCCCcceeeecC-CCceEEeecC-----CCceee
Confidence 356666444442 233567778865444321 2333444455678889999 9998877543 344899
Q ss_pred EECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec-ccCCCCceeCcCC
Q 004971 352 FDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF-RFDGSFPSFSPKG 430 (721)
Q Consensus 352 ~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~SpDG 430 (721)
|++...+ ....+.+|...+....|.-...+++..+.+... -.+++....-.-+.+ ......+..+ +
T Consensus 246 Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti---------K~WDl~k~~C~kt~l~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 246 WNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI---------KLWDLQKAYCSKTVLPGSQCNDIVCS--I 312 (459)
T ss_pred eeccchh--hhhhhcccccceeeehhhccccceeeccccchh---------hhhhhhhhheeccccccccccceEec--c
Confidence 9998776 445556677777777777665555554444442 233332221000000 0111122222 1
Q ss_pred CEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971 431 DRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506 (721)
Q Consensus 431 ~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 506 (721)
..++. .+..|..||..++...... .+.+.++..+++|..|...+ .+..+.+.++.... ....+
T Consensus 313 -~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss-------RDdtl~viDlRt~e-----I~~~~ 379 (459)
T KOG0288|consen 313 -SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS-------RDDTLKVIDLRTKE-----IRQTF 379 (459)
T ss_pred -eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec-------CCCceeeeeccccc-----EEEEe
Confidence 12222 3677999998877754433 67889999999999999886 45667776665432 22223
Q ss_pred ccCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEcc
Q 004971 507 TTNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 507 ~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
+... .......||||+.|++..+. +..||+|++.+++. ...+.. ....+..++|+|-|+.|+.++.+
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred eccccccccccceeEECCCCceeeeccC---CCcEEEEEccCceE--EEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 3222 23455899999999999887 88999999999985 333332 23247899999999999887765
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.16 E-value=1.4e-08 Score=106.30 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=102.5
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
+.++|-.|...++.++.||+|+.|+...... ....|++|+..+-.. ...|..+...++.++|||||++|+..+.+.
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCc
Confidence 5667778888889999999999998775432 456899999876553 556788888899999999999999988774
Q ss_pred CCCCCceeEEEEecCCCceE--E--eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 580 NPGSGSFEMYLIHPNGTGLR--K--LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~--~--l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.+-+|.......- . ... .|..-+....|+||+++++.++.+.. +.+|....
T Consensus 595 -------t~sl~~~~~~~~~e~~fa~~k-~HtRIIWdcsW~pde~~FaTaSRDK~-----------------VkVW~~~~ 649 (764)
T KOG1063|consen 595 -------TVSLYEVQEDIKDEFRFACLK-AHTRIIWDCSWSPDEKYFATASRDKK-----------------VKVWEEPD 649 (764)
T ss_pred -------eEEeeeeecccchhhhhcccc-ccceEEEEcccCcccceeEEecCCce-----------------EEEEeccC
Confidence 6666665332111 1 011 25555677889999999888877764 66666544
Q ss_pred CCeEEec-----cCCCCCCCceecCC
Q 004971 656 SDLKRLT-----QNSFEDGTPAWGPR 676 (721)
Q Consensus 656 ~~~~~lt-----~~~~~~~~~~~sp~ 676 (721)
...+.+. ..+..+++.+|.|.
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeecc
Confidence 4222222 24455666677663
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=1.6e-07 Score=98.52 Aligned_cols=323 Identities=13% Similarity=0.100 Sum_probs=188.1
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCCCCCCccee
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~~~~~l 402 (721)
.+++.| +.+.++.+. |+.+..|.++--.+++...+....+|...+..++|..-+. .++.++...+.. .+|
T Consensus 150 cL~~~~-~~~~~lla~---Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-----IRi 220 (764)
T KOG1063|consen 150 CLAALK-NNKTFLLAC---GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-----IRI 220 (764)
T ss_pred HHhhhc-cCCcEEEEe---cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-----EEE
Confidence 445566 666555543 4455556777655666677777888899999999988766 555444433321 455
Q ss_pred EEEeccCCCC---------------------cce----------ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCc
Q 004971 403 LLENIKSPLP---------------------DIS----------LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSN 450 (721)
Q Consensus 403 ~~~~~~~~~~---------------------~~~----------~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~ 450 (721)
|...+.+... .+. ...--+..+.|+|++..|... .+..+.+|..+...
T Consensus 221 W~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t 300 (764)
T KOG1063|consen 221 WRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT 300 (764)
T ss_pred EEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc
Confidence 5544433111 000 000012246899999666555 57888888876543
Q ss_pred e--E---EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 451 R--R---QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 451 ~--~---~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
- . ++- .++-....|+|++..++.-+ ..+..++|. +.+.. .......+..+-..+..++|+|
T Consensus 301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-------~~Gg~hlWk-t~d~~-~w~~~~~iSGH~~~V~dv~W~p 371 (764)
T KOG1063|consen 301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-------RTGGFHLWK-TKDKT-FWTQEPVISGHVDGVKDVDWDP 371 (764)
T ss_pred ceEEEEEEeecccccccceeeEEEcCCCCEEEEec-------ccCcEEEEe-ccCcc-ceeeccccccccccceeeeecC
Confidence 1 1 121 12234678999997776654 457888888 22211 1112223344446788899999
Q ss_pred CCCEEEEEEeeCC-----------------ceeE--------------------------EEEEC---------------
Q 004971 521 DGKWIVFRSTRTG-----------------YKNL--------------------------YIMDA--------------- 542 (721)
Q Consensus 521 Dg~~l~~~s~~~g-----------------~~~l--------------------------~~~d~--------------- 542 (721)
.|.+|+.++.+.. ..+| ++++.
T Consensus 372 sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~ 451 (764)
T KOG1063|consen 372 SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC 451 (764)
T ss_pred CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence 9999887764310 0000 00000
Q ss_pred ----------------------------CCCcc----c---------------------------ceEECcCCCcCceee
Q 004971 543 ----------------------------EGGEG----Y---------------------------GLHRLTEGPWSDTMC 563 (721)
Q Consensus 543 ----------------------------~~g~~----~---------------------------~~~~l~~~~~~~~~~ 563 (721)
++|.. . ++..|..+.+.+..+
T Consensus 452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l 531 (764)
T KOG1063|consen 452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL 531 (764)
T ss_pred ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence 00100 0 011122334456778
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 643 (721)
+.||+|+.||.+..... .....|++|+..+-...+... +|.-.+..++|||||++|+..+.+....
T Consensus 532 ~~s~~gnliASaCKS~~--~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~s----------- 597 (764)
T KOG1063|consen 532 AISPTGNLIASACKSSL--KEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVS----------- 597 (764)
T ss_pred EecCCCCEEeehhhhCC--ccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEE-----------
Confidence 99999998887654321 245689999987765555333 3777889999999999999888876542
Q ss_pred CCccEEEEEcCCCCe---EEeccCCCCCCCceecCCcCCccc
Q 004971 644 PYGEIFKIKLDGSDL---KRLTQNSFEDGTPAWGPRFIRPVD 682 (721)
Q Consensus 644 ~~~~l~~~d~~~~~~---~~lt~~~~~~~~~~~sp~~l~~~~ 682 (721)
||-.--+-... ..+..|..-+.+..|+|+-..++.
T Consensus 598 ----l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 598 ----LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred ----eeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 54432111111 235556666788999997544443
No 139
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.1e-08 Score=101.50 Aligned_cols=332 Identities=14% Similarity=0.126 Sum_probs=193.1
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
++ +|+.+++..+. .++..+...+. ..++......+...|||-|.+|..=... .-+... ......
T Consensus 43 S~--~G~lfA~~~~~-----------~v~i~~~~~~~-~~lt~~~~~~~~L~fSP~g~yL~T~e~~-~i~~~~-~~~~pn 106 (566)
T KOG2315|consen 43 SN--NGRLFAYSDNQ-----------VVKVFEIATLK-VVLCVELKKTYDLLFSPKGNYLLTWEPW-AIYGPK-NASNPN 106 (566)
T ss_pred cC--CCcEEEEEcCC-----------eEEEEEccCCc-EEEEeccceeeeeeeccccccccccccc-ccccCC-CCCCCc
Confidence 78 89988886554 45555544443 3333332345555899999998752210 001111 112356
Q ss_pred EEEEEcCCCceeEEEe--ccC-CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971 251 IYIFLTRDGTQRVKIV--ENG-GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~--~~~-~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (721)
+-+|+.+++..+--.. ... -.++|+.|..+.+ +.. .+.+.+|......+ ....+. ...+....+
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv--~nev~f~~~~~f~~--------~~~kl~--~~~i~~f~l 173 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLV--SNEVQFYDLGSFKT--------IQHKLS--VSGITMLSL 173 (566)
T ss_pred eeeeeeccceehhheehhhhcCcccccccchhhhh-hhh--cceEEEEecCCccc--------eeeeee--ccceeeEEe
Confidence 6677777754332221 111 2568998854322 222 34455664333221 122222 224467778
Q ss_pred ecCCC--CEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEeeCC---CCCCCCcce
Q 004971 328 SPGNN--KFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKCRGG---STREDGNNQ 401 (721)
Q Consensus 328 sp~dG--~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~---~~~~~~~~~ 401 (721)
|| .+ .+|++.....++....+++|...-+...... ...--......+.|.+-|..|+......- ..-.-+...
T Consensus 174 Sp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 174 SP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred cC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 88 53 4666665666667778888876532221211 11111233446789998887665433221 112223367
Q ss_pred eEEEeccCCCCcceec-ccCCCCceeCcCCCEEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecC
Q 004971 402 LLLENIKSPLPDISLF-RFDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 402 l~~~~~~~~~~~~~~~-~~~~~~~~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~ 477 (721)
+++..+.+....+.+. .+.+..+.|+|+|+.++++ -...+.++|+.+...-.+..+.-..+.|+|.|+.|+++.-+
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecC
Confidence 8888887543333333 2334568999999988877 25678889987755444446667789999999999999854
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeC---CceeEEEEECCC
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEG 544 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~ 544 (721)
.-.+.+.||++... +.|.... .....+.|+|||++++.+.... -++.+.+|+..+
T Consensus 333 ----NL~G~mEvwDv~n~--------K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 333 ----NLPGDMEVWDVPNR--------KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ----CCCCceEEEeccch--------hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 36789999998642 2333332 3445689999999999886521 244566777653
No 140
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.13 E-value=5.7e-08 Score=104.85 Aligned_cols=304 Identities=13% Similarity=0.074 Sum_probs=178.2
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECC--CCce-EEeecccC---CC--CcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLV--KNKF-IELTRFVS---PK--THHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~--tg~~-~~l~~~~~---~~--~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l 402 (721)
.|.+.+|.....+.....+++.... .++. +.+..... .. .......+||||++|+|....++... ..+
T Consensus 77 ~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~----~~l 152 (414)
T PF02897_consen 77 RGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEW----YTL 152 (414)
T ss_dssp ETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSE----EEE
T ss_pred ECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCce----EEE
Confidence 5566776555544444445555554 2332 33322111 11 12235789999999999877766432 567
Q ss_pred EEEeccCCCCccee-cccCCCCceeCcCCCEEEEEe------------CCcEEEEECCCCce--EEEe--ec--C-ceee
Q 004971 403 LLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFVE------------FPGVYVVNSDGSNR--RQVY--FK--N-AFST 462 (721)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~~------------~~~l~v~d~~~g~~--~~l~--~~--~-~~~~ 462 (721)
++.++.++...... .......+.|++||+.++|.. ...|+.+.+.+... ..|. .. . ...+
T Consensus 153 ~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~ 232 (414)
T PF02897_consen 153 RVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV 232 (414)
T ss_dssp EEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE
T ss_pred EEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE
Confidence 88888776221111 111222389999999999982 33489999877754 3555 12 2 3478
Q ss_pred EEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCC-CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeEEE
Q 004971 463 VWDPVREAVVYTSGGPEFASESS-EVDIISINVDDV-DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYI 539 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~ 539 (721)
..|+|+++|++.+. ... ...+|.++.... ......+.+...........-.. |..+++.++.+ ...+|+.
T Consensus 233 ~~s~d~~~l~i~~~------~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 233 SRSKDGRYLFISSS------SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp EE-TTSSEEEEEEE------SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEE
T ss_pred EecCcccEEEEEEE------ccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEE
Confidence 89999999998764 223 478888887652 00124555555432222222222 66777776654 4569999
Q ss_pred EECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCCCCcCCeEECC
Q 004971 540 MDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 540 ~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
++++........ .+........--.++..+++|++..... +...|+++++. +.....+... ..+.+......+
T Consensus 306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~ 380 (414)
T PF02897_consen 306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDF 380 (414)
T ss_dssp EETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-T
T ss_pred ecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcEEeeecCC-cceEEeccCCCC
Confidence 999877632122 3444333223345566788899888874 78899999999 6555555432 334445556667
Q ss_pred CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 618 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
++..+.+....-.. ++.+|.+|+++++.+.+..
T Consensus 381 ~~~~~~~~~ss~~~-------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 381 DSDELRFSYSSFTT-------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp T-SEEEEEEEETTE-------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEEeCCCC-------------CCEEEEEECCCCCEEEEEe
Confidence 88888776654433 4679999999999887753
No 141
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.3e-08 Score=109.08 Aligned_cols=267 Identities=11% Similarity=0.061 Sum_probs=180.0
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|..-.+. .+-+.|.+++|+..... -+.++..|...++.+.|.| .+...+. |+++..|.
T Consensus 14 glsFHP~rPwIL--tslHsG~IQlWDYRM~t---------li~rFdeHdGpVRgv~FH~-~qplFVS-----GGDDykIk 76 (1202)
T KOG0292|consen 14 GLSFHPKRPWIL--TSLHSGVIQLWDYRMGT---------LIDRFDEHDGPVRGVDFHP-TQPLFVS-----GGDDYKIK 76 (1202)
T ss_pred ceecCCCCCEEE--EeecCceeeeehhhhhh---------HHhhhhccCCccceeeecC-CCCeEEe-----cCCccEEE
Confidence 457888733444 24457999999554333 4566677788899999999 8875443 66788899
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCC
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKG 430 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG 430 (721)
+|+.++.+ .+..+.+|-..++...|.+.=-+|+.++++.. .++|-+..+.....++....-+-..+|+|..
T Consensus 77 VWnYk~rr--clftL~GHlDYVRt~~FHheyPWIlSASDDQT-------IrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 77 VWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWILSASDDQT-------IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred EEecccce--ehhhhccccceeEEeeccCCCceEEEccCCCe-------EEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 99998766 55666777888899999999999998887776 4455544332222222221112235889988
Q ss_pred CEEEEEe-CCcEEEEECCCCceEE-----------------------------Ee---ecCceeeEEcCCCCeEEEEecC
Q 004971 431 DRIAFVE-FPGVYVVNSDGSNRRQ-----------------------------VY---FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 431 ~~la~~~-~~~l~v~d~~~g~~~~-----------------------------l~---~~~~~~~~~spdg~~la~~~~~ 477 (721)
..|+.++ +..|.+||+.+-+.+. +. +.++...+|.|.-..|+..+
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-- 225 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-- 225 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC--
Confidence 7787775 8889999987532111 11 22455677777766666554
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~ 557 (721)
++..+.+|+++.... -++.....|-.++..+-|+|....|+..++ +..|.+||....+. +...-...
T Consensus 226 -----DDRqVKlWrmnetKa---WEvDtcrgH~nnVssvlfhp~q~lIlSnsE---DksirVwDm~kRt~--v~tfrren 292 (1202)
T KOG0292|consen 226 -----DDRQVKLWRMNETKA---WEVDTCRGHYNNVSSVLFHPHQDLILSNSE---DKSIRVWDMTKRTS--VQTFRREN 292 (1202)
T ss_pred -----CcceeeEEEeccccc---eeehhhhcccCCcceEEecCccceeEecCC---CccEEEEecccccc--eeeeeccC
Confidence 678999999986442 123334455578888999999888887776 78999999986654 44443333
Q ss_pred cCceeeEEccCCCEEEEEEcc
Q 004971 558 WSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 558 ~~~~~~~~SpDG~~l~~~~~~ 578 (721)
...+-++-.|..+.++.+.+.
T Consensus 293 dRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 293 DRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred CeEEEEEecCCcceeeeecCC
Confidence 334667888988866665544
No 142
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.11 E-value=9.1e-09 Score=99.34 Aligned_cols=271 Identities=14% Similarity=0.071 Sum_probs=185.1
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
..+...+..+++.| .+++++. |+.++.|.+||+++|+.+. ...++-..+..+++|+--.+|+.+..++.
T Consensus 148 ~gHlgWVr~vavdP-~n~wf~t-----gs~DrtikIwDlatg~Lkl--tltGhi~~vr~vavS~rHpYlFs~gedk~--- 216 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDP-GNEWFAT-----GSADRTIKIWDLATGQLKL--TLTGHIETVRGVAVSKRHPYLFSAGEDKQ--- 216 (460)
T ss_pred hhccceEEEEeeCC-CceeEEe-----cCCCceeEEEEcccCeEEE--eecchhheeeeeeecccCceEEEecCCCe---
Confidence 34555778889999 8888776 5567789999999998543 23455667888999998888887666554
Q ss_pred CCCcceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCC
Q 004971 396 EDGNNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVR 468 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg 468 (721)
+--+|+.... -+..+ -..+..+..+|.-..|+.. .+..+.+||+.+....... ...+..+.+.|-.
T Consensus 217 ------VKCwDLe~nk-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 217 ------VKCWDLEYNK-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred ------eEEEechhhh-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence 3334443221 11111 1123345677777666666 4788999999887755444 4466778888777
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~ 548 (721)
-.++..+ .+..+++|++.... ....++.+...+..++..|.-..++.++ ...|..|++..|+.
T Consensus 290 pqvit~S-------~D~tvrlWDl~agk-----t~~tlt~hkksvral~lhP~e~~fASas----~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 290 PQVITGS-------HDSTVRLWDLRAGK-----TMITLTHHKKSVRALCLHPKENLFASAS----PDNIKQWKLPEGEF- 352 (460)
T ss_pred CceEEec-------CCceEEEeeeccCc-----eeEeeecccceeeEEecCCchhhhhccC----CccceeccCCccch-
Confidence 7777765 68999999998765 6678888888888899999877776655 46788999988875
Q ss_pred ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee----ecC---CCCCcCCeEECCCCCE
Q 004971 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI----QSG---SAGRANHPYFSPDGKS 621 (721)
Q Consensus 549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~---~~~~~~~~~~SpDG~~ 621 (721)
+..+..+...+..++...||- ++.+++.+ .|+.||..+|-..+-. ..+ ....+...+|...|..
T Consensus 353 -~~nlsgh~~iintl~~nsD~v-~~~G~dng-------~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 353 -LQNLSGHNAIINTLSVNSDGV-LVSGGDNG-------SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred -hhccccccceeeeeeeccCce-EEEcCCce-------EEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence 556677777777888877763 33444332 7999999887533322 111 1223345567778888
Q ss_pred EEEEEecCC
Q 004971 622 IVFTSDYGG 630 (721)
Q Consensus 622 l~~~~~~~~ 630 (721)
|+....+.+
T Consensus 424 lit~eadKt 432 (460)
T KOG0285|consen 424 LITGEADKT 432 (460)
T ss_pred EEeccCCcc
Confidence 877666654
No 143
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.2e-09 Score=94.95 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=176.7
Q ss_pred CCcccCceeecCCCCEEEEEEe--cCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATR--RPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~--~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
++.-.++.|||.-..+|+.+.. ..-...++|++.++..++ ..+... ........+++||+.-..++++...++
T Consensus 8 gf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDG--- 83 (311)
T KOG0277|consen 8 GFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-YDTEDGLFDVAWSENHENQVIAASGDG--- 83 (311)
T ss_pred CcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-eecccceeEeeecCCCcceEEEEecCc---
Confidence 3444678888843445655442 222345679999996443 333322 233556778999998776666544333
Q ss_pred CCCcceeEEEeccCCCCcceecc---cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971 396 EDGNNQLLLENIKSPLPDISLFR---FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV 467 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd 467 (721)
.+.+.++..+..++..+. .++..+.|++-.++....+ ++.|.+|+..-++..+-+ ...+....|||-
T Consensus 84 -----SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 84 -----SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred -----eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC
Confidence 245555544444443332 3344567777666665553 889999998766644444 345778999996
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
-.-++... ..++..+||++...+ +...+..+........|+.-...+++.+.. +..|+.||+..-+
T Consensus 159 ~~nlfas~------Sgd~~l~lwdvr~~g-----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v--d~~vr~wDir~~r- 224 (311)
T KOG0277|consen 159 IPNLFASA------SGDGTLRLWDVRSPG-----KFMSIEAHNSEILCCDWSKYNHNVLATGGV--DNLVRGWDIRNLR- 224 (311)
T ss_pred CCCeEEEc------cCCceEEEEEecCCC-----ceeEEEeccceeEeecccccCCcEEEecCC--CceEEEEehhhcc-
Confidence 55554443 368999999998876 344466666667778899877777776543 6789999998654
Q ss_pred cceEECcCCCcCceeeEEccCCCEEE-EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC-CCEEEEE
Q 004971 548 YGLHRLTEGPWSDTMCNWSPDGEWIA-FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD-GKSIVFT 625 (721)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD-G~~l~~~ 625 (721)
..+..|..+...+..+.|||--.-|+ .++.+ ..+.+||...+....-+-..|...+..+.||+- +.+++-.
T Consensus 225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-------mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-------MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred ccceeecCCceEEEEEecCcchhhHhhhcccc-------ceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 23566777778889999999865544 44444 378889886543221111115555667777764 4556655
Q ss_pred EecC
Q 004971 626 SDYG 629 (721)
Q Consensus 626 ~~~~ 629 (721)
+-+.
T Consensus 298 gWDe 301 (311)
T KOG0277|consen 298 GWDE 301 (311)
T ss_pred cccc
Confidence 4444
No 144
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=2.7e-08 Score=90.88 Aligned_cols=269 Identities=11% Similarity=0.061 Sum_probs=172.5
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
..+......+..+.+.- ||++.+.. +.+..+++||+..|. .+....+|+..+...+.+-|...++....+
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltc-----GsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgD-- 80 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTC-----GSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGD-- 80 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEc-----CCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCC--
Confidence 33344455667788888 99987762 356679999999887 555667778888888888888877654332
Q ss_pred CCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEE
Q 004971 393 STREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVW 464 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~ 464 (721)
..+++++..++ ...+.........+.|..+.+.++..+ +..+.+||-.+....++. ...+.++..
T Consensus 81 -------k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 -------KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred -------ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 23666676655 223333344455678887776555554 788999999776644443 334555544
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
+ +..|+..+ .+++++.|++..... .....+..+....||+||+.++..+. +..|.++|-.+
T Consensus 154 ~--~heIvaGS-------~DGtvRtydiR~G~l-------~sDy~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~t 214 (307)
T KOG0316|consen 154 A--EHEIVAGS-------VDGTVRTYDIRKGTL-------SSDYFGHPITSVSFSKDGNCSLASSL---DSTLRLLDKET 214 (307)
T ss_pred c--ccEEEeec-------cCCcEEEEEeeccee-------ehhhcCCcceeEEecCCCCEEEEeec---cceeeecccch
Confidence 3 33444443 578899998876431 11112246778899999999998887 78999999999
Q ss_pred CcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-cCCeEECCCCCE
Q 004971 545 GEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-ANHPYFSPDGKS 621 (721)
Q Consensus 545 g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~~~SpDG~~ 621 (721)
|+. +.....+.. .-....++....+++.++.++ .+|.||+...+...-+.. +... +.++.+.|.-..
T Consensus 215 Gkl--L~sYkGhkn~eykldc~l~qsdthV~sgSEDG-------~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 215 GKL--LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG-------KVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDD 284 (307)
T ss_pred hHH--HHHhcccccceeeeeeeecccceeEEeccCCc-------eEEEEEeccceeeeeecc-CCceeEEeeecccCccc
Confidence 984 322222221 113455666566666666664 899999987654433332 2222 567777777655
Q ss_pred EEEEEe
Q 004971 622 IVFTSD 627 (721)
Q Consensus 622 l~~~~~ 627 (721)
++.+..
T Consensus 285 f~~A~~ 290 (307)
T KOG0316|consen 285 FITATG 290 (307)
T ss_pred eeEecC
Confidence 554443
No 145
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=9.1e-08 Score=86.63 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=167.3
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEE----EEECCCCce-------EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIE----LFDLVKNKF-------IELTRFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~----l~dl~tg~~-------~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
.+..++|.| .|...++.++. ..-+|- +.|+..+-. ....+...+.+.+.+.+|||+|+.|+..+.
T Consensus 34 airav~fhp-~g~lyavgsns---kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 34 AIRAVAFHP-AGGLYAVGSNS---KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred heeeEEecC-CCceEEeccCC---ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 457889999 99866664332 222222 234422211 111223445777889999999999998766
Q ss_pred eCCCCCCCCcceeEEEecc-------CCCCcceecccCCCCceeCcC----CCEEEEE--eCCcEEEEECCCCceEEEee
Q 004971 390 RGGSTREDGNNQLLLENIK-------SPLPDISLFRFDGSFPSFSPK----GDRIAFV--EFPGVYVVNSDGSNRRQVYF 456 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~SpD----G~~la~~--~~~~l~v~d~~~g~~~~l~~ 456 (721)
+... -+..+. ++..++.......+.++|-.| |..|+.. ++..||+-|...|+.-+...
T Consensus 110 dk~i---------k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 110 DKTI---------KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred CceE---------EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 6552 222221 222233333344455555322 3334444 46778988887777544432
Q ss_pred ---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-------CCCcceEEccCCCEEE
Q 004971 457 ---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-------KNNAFPSVSPDGKWIV 526 (721)
Q Consensus 457 ---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpDg~~l~ 526 (721)
+.+. .-++-+|-.++..+ .+..+++|++..+. .+..+.... ..+..++..|.|+.|+
T Consensus 181 ghtghil-alyswn~~m~~sgs-------qdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 181 GHTGHIL-ALYSWNGAMFASGS-------QDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred CCcccEE-EEEEecCcEEEccC-------CCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 2222 22333555555443 57899999998765 444443321 2455678999999888
Q ss_pred EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee---
Q 004971 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--- 603 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--- 603 (721)
.... +....+||+.+++. +.....+...+..+.|||..-+|+.++.+. .|.+-|+.+.-..++..
T Consensus 248 sg~~---dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~-------~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 248 SGHA---DSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDM-------KIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred eccC---CCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccc-------eEEEeecccchhhcCceEEE
Confidence 7765 67888999999886 666777777888999999999999998875 89999998764333221
Q ss_pred cCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 604 SGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
..+........|.|..-.++.++.+.+
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcce
Confidence 125555566788887655555555443
No 146
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=9.5e-09 Score=103.37 Aligned_cols=265 Identities=16% Similarity=0.119 Sum_probs=177.6
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.+.+++|||.+-..++..+. .++.+|+..+-.... +..+ ...+....|-.||+.++.....+-
T Consensus 28 ~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srF---k~~v~s~~fR~DG~LlaaGD~sG~------- 91 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRF---KDVVYSVDFRSDGRLLAAGDESGH------- 91 (487)
T ss_pred cceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhh---ccceeEEEeecCCeEEEccCCcCc-------
Confidence 45678888833334554332 238889887765333 3333 445667788889987776433333
Q ss_pred ceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeE
Q 004971 400 NQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAV 471 (721)
Q Consensus 400 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~l 471 (721)
+.+.+..+. ...+...........|+|++..++.. + +..+.+||++++.. ++. ...+...+|+|-...+
T Consensus 92 --V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 92 --VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred --EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeE
Confidence 333343321 11112222234456889888776655 3 56678889988875 433 5688899999999988
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
+++. .-++.+++|+....+. ....+ .++..+....+-|.|..|+.++ .+.+.+||+-+|.. .+.
T Consensus 169 vvtG------sYDg~vrl~DtR~~~~----~v~el-nhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~q-ll~ 232 (487)
T KOG0310|consen 169 VVTG------SYDGKVRLWDTRSLTS----RVVEL-NHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQ-LLT 232 (487)
T ss_pred EEec------CCCceEEEEEeccCCc----eeEEe-cCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCce-ehh
Confidence 8876 3689999999987643 33334 3445777888999999998776 57899999986542 133
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
....+.-.++.+.+..|++.|+.++-+. ++.+||..+-+..--.. -.+.+-+++.|||+..++..-.++
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDR-------HVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred hhhcccceEEEEEeecCCceEeeccccc-------ceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccc
Confidence 3334666788999999999999999885 78888866544332222 456778899999999988766554
No 147
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.3e-09 Score=96.01 Aligned_cols=229 Identities=12% Similarity=0.167 Sum_probs=163.0
Q ss_pred CCCceeCcC-CCEEEEE--------eCCcEEEEECCCC-ceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 421 GSFPSFSPK-GDRIAFV--------EFPGVYVVNSDGS-NRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 421 ~~~~~~SpD-G~~la~~--------~~~~l~v~d~~~g-~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
+..+.|||= ..+|+++ +.+.|++.++..+ ..+.+. ....+.++||+.-..++++. ..++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a------~GDGS 84 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA------SGDGS 84 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE------ecCce
Confidence 445667762 2345544 5789999999643 333332 56788999999988888777 36899
Q ss_pred EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S 566 (721)
++||+...... .+..+..+...+.++.|++-.++.+..+.= +..|.+|+..-+.. +.....+...+...+||
T Consensus 85 Lrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW--D~TiKLW~~~r~~S--v~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 85 LRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSW--DGTIKLWDPNRPNS--VQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeecc--CCceEeecCCCCcc--eEeecCCccEEEEEecC
Confidence 99999766553 666777787788889999876666555421 66899998876654 66677777778899999
Q ss_pred cC-CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 567 PD-GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 567 pD-G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
|. +..++.++.+. .+.+||+........+.. |...+....|+.-...+++++..++
T Consensus 157 p~~~nlfas~Sgd~-------~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~vl~Tg~vd~--------------- 213 (311)
T KOG0277|consen 157 PHIPNLFASASGDG-------TLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNVLATGGVDN--------------- 213 (311)
T ss_pred CCCCCeEEEccCCc-------eEEEEEecCCCceeEEEe-ccceeEeecccccCCcEEEecCCCc---------------
Confidence 96 55666666664 888899865544444332 6666777789887777777666554
Q ss_pred ccEEEEEcCCCC--eEEeccCCCCCCCceecCC---cCCccccc-ccc
Q 004971 646 GEIFKIKLDGSD--LKRLTQNSFEDGTPAWGPR---FIRPVDVE-EVK 687 (721)
Q Consensus 646 ~~l~~~d~~~~~--~~~lt~~~~~~~~~~~sp~---~l~~~~~~-~~~ 687 (721)
.|+.||+..=+ +-.|..|+..+....|||. .||..+.| .++
T Consensus 214 -~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 214 -LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred -eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 39999987643 4577778888999999994 77887777 444
No 148
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=5.7e-09 Score=111.91 Aligned_cols=208 Identities=14% Similarity=0.058 Sum_probs=133.4
Q ss_pred EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCE-EEEEe-
Q 004971 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR-IAFVE- 437 (721)
Q Consensus 360 ~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~-la~~~- 437 (721)
+.+..+.+|.+.+.++.||.++ .|+..+.+.. .+||-..-+..... -...--+..++|+|-..+ ++..+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKT-------VRLWh~~~~~CL~~-F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKT-------VRLWHPGRKECLKV-FSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEecccccc-------EEeecCCCcceeeE-EecCCeeEEEEecccCCCcEeeccc
Confidence 3566677888899999999765 6777777776 44554332222111 111112345788885544 44443
Q ss_pred CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----CC
Q 004971 438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----GK 511 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~ 511 (721)
++.+.+|++...+...-. ...++.+.|+|||+..++.+ -++..++|......- .......+... ..
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt-------~~G~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT-------FNGYCRFYDTEGLKL-VSDFHIRLHNKKKKQGK 502 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE-------eccEEEEEEccCCeE-EEeeeEeeccCccccCc
Confidence 899999999887655544 57899999999999999987 357777776543210 00000111111 12
Q ss_pred CCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 512 NNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 512 ~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
.+..+.|.|- -..|+++++ +.+|.++|..+... +..+-. .........|+.||++|++++.+. .|
T Consensus 503 rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-------~V 570 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDL--VHKFKGFRNTSSQISASFSSDGKHIVSASEDS-------WV 570 (712)
T ss_pred eeeeeEecCCCCCeEEEecC---CCceEEEeccchhh--hhhhcccccCCcceeeeEccCCCEEEEeecCc-------eE
Confidence 5677777763 335777877 88999999976553 222221 122235678999999999999775 89
Q ss_pred EEEecCCC
Q 004971 589 YLIHPNGT 596 (721)
Q Consensus 589 ~~~d~~~~ 596 (721)
|+|+.+.-
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99998543
No 149
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.06 E-value=3.9e-09 Score=97.03 Aligned_cols=217 Identities=16% Similarity=0.058 Sum_probs=146.7
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecccCC
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRFDG 421 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~ 421 (721)
.+-.-.+||.-+|. .|..+ .|.--+..++|+.|.++|+......- +.+.++..+ ...+...+...
T Consensus 79 adftakvw~a~tgd--elhsf-~hkhivk~~af~~ds~~lltgg~ekl---------lrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGD--ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKL---------LRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred ccchhhhhhhhhhh--hhhhh-hhhheeeeEEecccchhhhccchHHH---------hhhhhccCCCCCchhhcCCCCcc
Confidence 34446799998887 44432 23445678999999999987655443 223333333 33333334444
Q ss_pred CCceeCcCCCEEEE-EeCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 422 SFPSFSPKGDRIAF-VEFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 422 ~~~~~SpDG~~la~-~~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
+.+-|-...+.|.. ..+..+.+||..++... .|. +..+.++.+++||++|..+- ...+..|+.+.-+
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--------gssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--------GSSVKFWDAKSFG-- 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--------CceeEEecccccc--
Confidence 55566555555555 46889999999988754 455 77899999999999988763 4678888776432
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCCEEEEEEc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.++. ...+..+.+.+.+|+...++...+ +..+|.+|..+|+. +... ..+.+.+..+.|||||..-+.++.
T Consensus 217 ---~lKs-~k~P~nV~SASL~P~k~~fVaGge---d~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 217 ---LLKS-YKMPCNVESASLHPKKEFFVAGGE---DFKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ---ceee-ccCccccccccccCCCceEEecCc---ceEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCC
Confidence 1221 123346777899999877776666 78999999999985 3332 455667889999999987666666
Q ss_pred cCCCCCCceeEEEEecCCCceE
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
++ .|.+|.+.-++..
T Consensus 288 DG-------TirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DG-------TIRLWQTTPGKTY 302 (334)
T ss_pred Cc-------eEEEEEecCCCch
Confidence 64 7888877665543
No 150
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=4.7e-08 Score=94.80 Aligned_cols=253 Identities=13% Similarity=0.124 Sum_probs=150.2
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....++|.+ ..++|+. ...+..|++||-.+.....+... ....+..++|-|.+...+....+.+ .
T Consensus 100 dlr~~aWhq---H~~~fav---a~nddvVriy~ksst~pt~Lks~--sQrnvtclawRPlsaselavgCr~g-------I 164 (445)
T KOG2139|consen 100 DLRGVAWHQ---HIIAFAV---ATNDDVVRIYDKSSTCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAG-------I 164 (445)
T ss_pred ceeeEeech---hhhhhhh---hccCcEEEEeccCCCCCceecch--hhcceeEEEeccCCcceeeeeecce-------e
Confidence 345566655 3333332 12344588888776554444422 2456778999998766555555555 2
Q ss_pred eeEEEeccCCCC-----------cceecc--cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceee
Q 004971 401 QLLLENIKSPLP-----------DISLFR--FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFST 462 (721)
Q Consensus 401 ~l~~~~~~~~~~-----------~~~~~~--~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~ 462 (721)
-+|..+...... ++...+ ..+.+++|.+||..++.. ++..|.+||.+++....|. .+.+..+
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 233322211111 111111 113457999999998887 4788999999999877776 5677789
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
.|||||.+|+.++ -+....+|.....- ...+.....+.+....|+|+|++|+|+... ...||....
T Consensus 245 kwSPdgd~lfaAt-------~davfrlw~e~q~w-----t~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f 310 (445)
T KOG2139|consen 245 KWSPDGDVLFAAT-------CDAVFRLWQENQSW-----TKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTF 310 (445)
T ss_pred EEcCCCCEEEEec-------ccceeeeehhcccc-----eecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEee
Confidence 9999999998876 45677788544322 222333344588889999999999998753 445665543
Q ss_pred CCCcc--------cc---eEECc-----CC----CcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEe
Q 004971 543 EGGEG--------YG---LHRLT-----EG----PWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 543 ~~g~~--------~~---~~~l~-----~~----~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l 601 (721)
.+... +. +..|. .+ -+....++|.|.|.+|++.....+- ......|-+||....-...+
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 32110 00 00110 11 2335679999999999998765421 11233456666544444433
Q ss_pred e
Q 004971 602 I 602 (721)
Q Consensus 602 ~ 602 (721)
.
T Consensus 391 s 391 (445)
T KOG2139|consen 391 S 391 (445)
T ss_pred E
Confidence 3
No 151
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.04 E-value=1.8e-08 Score=99.85 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=147.1
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
..++|+...++.. .+..|++|.........+. ...+......|.|.+|+.++ +++.+-+.++....
T Consensus 267 v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs-------~d~~w~Fsd~~~g~--- 336 (506)
T KOG0289|consen 267 VKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS-------NDGTWAFSDISSGS--- 336 (506)
T ss_pred EEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec-------CCceEEEEEccCCc---
Confidence 4677777666555 3677888887554433332 66788899999999999987 45556666665543
Q ss_pred ccceEEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 500 VSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 500 ~~~~~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
........ +-.....+|+|||-.+..... +..|.+||+.++.. +..+..+.+.+..++||.+|=||+.+.+
T Consensus 337 --~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 337 --QLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---DGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred --EEEEEeeccccceeEEeeEcCCceEEeccCC---CceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEec
Confidence 44444442 234667899999987776665 78899999988764 7777788888999999999999999998
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
+. .|.+||+..-+..+-........+..+.|.+.|++|+..+.+- .||+++-.++.
T Consensus 410 d~-------~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l-----------------~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 410 DG-------SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL-----------------QVYICKKKTKS 465 (506)
T ss_pred CC-------eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee-----------------EEEEEeccccc
Confidence 85 6999999776543333322334578899999999998874432 47877777766
Q ss_pred eEEec---cCCCCCCCceec
Q 004971 658 LKRLT---QNSFEDGTPAWG 674 (721)
Q Consensus 658 ~~~lt---~~~~~~~~~~~s 674 (721)
.+.+. .+.+-.....|.
T Consensus 466 W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred ceeeehhhhcccccceeeec
Confidence 55443 344333344443
No 152
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.03 E-value=1e-08 Score=97.11 Aligned_cols=267 Identities=12% Similarity=0.096 Sum_probs=175.5
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-----CCC---------------CcceecccCCCCceeC
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-----SPL---------------PDISLFRFDGSFPSFS 427 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-----~~~---------------~~~~~~~~~~~~~~~S 427 (721)
|....+..+|||||..++..+.+...+ +.+.. ... ..+.........+.|+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIK---------ildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIK---------ILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEE---------EeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 355567789999999988876655522 22211 000 0111112234567999
Q ss_pred cCCCEEEEE-eCCcEEEEECCCCceEE----Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971 428 PKGDRIAFV-EFPGVYVVNSDGSNRRQ----VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS 501 (721)
Q Consensus 428 pDG~~la~~-~~~~l~v~d~~~g~~~~----l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 501 (721)
|..+.|+.. .+..|.++|......++ +. ...+..+.|.|.|.+|++.. +....++|+++.-.-
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-------dHp~~rlYdv~T~Qc---- 250 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-------DHPTLRLYDVNTYQC---- 250 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-------CCCceeEEeccceeE----
Confidence 998877777 47889999986543322 22 45788999999999999987 457889998875321
Q ss_pred ceEEcc--cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEc
Q 004971 502 AVRRLT--TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 502 ~~~~l~--~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
-+.... .+.+.+..+.+|+.|+..+..+. +..|.+||--+++. ++.+.. +...+.+..|+.+|++|+....
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk---DG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASK---DGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEecc---CCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 111111 12256777899999997777776 77899999877765 555542 3445788999999999988877
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeec-CCCCC---cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGR---ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~---~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 653 (721)
+. .+++|.+.+++..+.... +..+. -....|.....++++-....+ .+-.||.
T Consensus 326 DS-------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~----------------slcsWda 382 (430)
T KOG0640|consen 326 DS-------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASN----------------SLCSWDA 382 (430)
T ss_pred cc-------eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccC----------------ceeeccc
Confidence 64 899999999976654432 11122 234667777778777666554 4888998
Q ss_pred CCCCeEEec--cCCCCCCCceecCCcCCccc
Q 004971 654 DGSDLKRLT--QNSFEDGTPAWGPRFIRPVD 682 (721)
Q Consensus 654 ~~~~~~~lt--~~~~~~~~~~~sp~~l~~~~ 682 (721)
.++..+.|- +|.+.......||..-+++.
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 776544333 24445555666887655554
No 153
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.03 E-value=3.6e-09 Score=102.32 Aligned_cols=249 Identities=11% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 422 (721)
|+.++.+.+||++..+. +..+..+.+-+.++.++. ..++++..+.. ...|-.+. +... .+-+...
T Consensus 85 Gs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt-------vK~wk~~~--~p~~--tilg~s~ 149 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKT-------VKQWKIDG--PPLH--TILGKSV 149 (433)
T ss_pred cccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcc-------eeeeeccC--Ccce--eeecccc
Confidence 55677899999988663 334455677777888875 56666666665 33343322 2111 1111111
Q ss_pred CceeCcCC-CEEEEEeCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 423 FPSFSPKG-DRIAFVEFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 423 ~~~~SpDG-~~la~~~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
...++.-. ..+..+....|.+||..-..+. .+. ...+..+.|+|--..|+.++ ..+..+.||++..+.
T Consensus 150 ~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~------~sDrsIvLyD~R~~~-- 221 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC------ASDRSIVLYDLRQAS-- 221 (433)
T ss_pred ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee------ccCCceEEEecccCC--
Confidence 11111111 1111223456889998655543 333 34567899999888887766 357888888887765
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCCEEEEEEc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.++.+.... ....++|+|.+--++.+++ +..||.+|...-+. +..+ ..+...+.++.|||-|+.++.++.
T Consensus 222 ---Pl~KVi~~m-RTN~IswnPeafnF~~a~E---D~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 222 ---PLKKVILTM-RTNTICWNPEAFNFVAANE---DHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ---ccceeeeec-cccceecCccccceeeccc---cccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccc
Confidence 444444333 4567899995544444444 77899999875432 2222 244556788999999999999998
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+. .|.++.+..+..+.+.-..--..+..+.||-|.++|+..+++.+
T Consensus 293 Dk-------sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 293 DK-------SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred cc-------eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 85 89999998887776642212235678999999999987777664
No 154
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=9.7e-08 Score=95.02 Aligned_cols=227 Identities=19% Similarity=0.214 Sum_probs=140.6
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeC-cCCCEEEEEeCCcEEEEECCCCceE
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS-PKGDRIAFVEFPGVYVVNSDGSNRR 452 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~S-pDG~~la~~~~~~l~v~d~~~g~~~ 452 (721)
++.|.+....|+++.... .+|+..+..+....+..... ...+++. ++ ..++++....+.++|+.+++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~-g~l~v~~~~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPD-GRLYVADSGGIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESSS-EEEEEEECTT-SEEEEEETTCEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecCC-CceEEEEccC-CEEEEEEcCceEEEecCCCcEE
Confidence 478888777888764433 35777776665333222222 3335666 55 4677777788888899999876
Q ss_pred EEee--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971 453 QVYF--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524 (721)
Q Consensus 453 ~l~~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~ 524 (721)
.+.. .....+++.|+|+ |+++............-.||+++.++ +...+...-.....++|+|||+.
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-----~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-----KVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-----EEEEEEEEESSEEEEEEETTSSE
T ss_pred EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-----eEEEEecCcccccceEECCcchh
Confidence 6651 1234789999998 66665432211111127899998873 44555444456678999999999
Q ss_pred EEEEEeeCCceeEEEEECC--CCccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 525 IVFRSTRTGYKNLYIMDAE--GGEGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~--~g~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|++.... ...|+.++++ +++.. ....+.........+++..+|+ |+++.... ..|++++.+ |+..
T Consensus 148 lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~------~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 148 LYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGG------GRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETT------TEEEEEETT-SCEE
T ss_pred eeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCC------CEEEEECCC-ccEE
Confidence 9887653 5579998885 33221 1222333332356789999997 44454332 289999998 4544
Q ss_pred EeeecCCCCCcCCeEE-CCCCCEEEEEEe
Q 004971 600 KLIQSGSAGRANHPYF-SPDGKSIVFTSD 627 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~-SpDG~~l~~~~~ 627 (721)
..... ......+++| -+|.+.|++++.
T Consensus 218 ~~i~~-p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 218 REIEL-PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEcC-CCCCEEEEEEECCCCCEEEEEeC
Confidence 43333 2346788899 588898888764
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.01 E-value=2.2e-08 Score=95.57 Aligned_cols=261 Identities=13% Similarity=0.054 Sum_probs=153.8
Q ss_pred cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----------ccee-cccC--CCCcee-------CcCCCE
Q 004971 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----------DISL-FRFD--GSFPSF-------SPKGDR 432 (721)
Q Consensus 373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~-~~~~--~~~~~~-------SpDG~~ 432 (721)
.+..|||||.-|+..+.++.. ++|-........ .... .... .....| -|+...
T Consensus 53 kgckWSPDGSciL~~sedn~l-------~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCL-------NCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCceEEeecccCee-------eEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 467899999999988887773 333322211000 0000 0000 001122 255555
Q ss_pred EEEE-eCCcEEEEECCCCceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 433 IAFV-EFPGVYVVNSDGSNRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 433 la~~-~~~~l~v~d~~~g~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
++.. .+.-|.+||.-+|+.+--. -....++.|||||..|+.. .+..+++++....+..- ...
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------ykrcirvFdt~RpGr~c-~vy 196 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------YKRCIRVFDTSRPGRDC-PVY 196 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------ccceEEEeeccCCCCCC-cch
Confidence 5554 3677999999999876544 1245689999999999875 35678888875544310 011
Q ss_pred EEcccC----CCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 504 RRLTTN----GKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 504 ~~l~~~----~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
..++.+ .+.....+|||-.. .+++.+- ..++=++.-.++++ +..+..+.+.++++.|.+||.+|+.++..
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY---~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY---GQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecc---cceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeecccccC
Confidence 122221 13456679999554 6666654 33343444444554 55566777889999999999999887765
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCC-CcCC--eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~--~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
. ..|..||+...+.-......+.+ .-.. +...|+|++|+..+.++ .|.+||+++
T Consensus 272 ~------dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-----------------~V~vwdlk~ 328 (406)
T KOG2919|consen 272 D------DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-----------------SVRVWDLKD 328 (406)
T ss_pred C------CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-----------------cEEEEecCC
Confidence 4 38999999654211111011111 1112 34578899888665554 389999988
Q ss_pred -CCeEEecc-CCCCCCCceecCCc
Q 004971 656 -SDLKRLTQ-NSFEDGTPAWGPRF 677 (721)
Q Consensus 656 -~~~~~lt~-~~~~~~~~~~sp~~ 677 (721)
++...++. +.-.....++.|.|
T Consensus 329 ~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 329 LGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred CCCcccccccccccccceecCccc
Confidence 66444443 34445667777863
No 156
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=9.6e-08 Score=87.32 Aligned_cols=259 Identities=12% Similarity=0.067 Sum_probs=160.8
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
.|..||....+ ...+..+.+|.. ..+ . -++...+++..+..++.+. |...++. ++.+..+++|
T Consensus 24 ryN~dGnY~lt--cGsdrtvrLWNp-~rg-~-------liktYsghG~EVlD~~~s~-Dnskf~s-----~GgDk~v~vw 86 (307)
T KOG0316|consen 24 RYNVDGNYCLT--CGSDRTVRLWNP-LRG-A-------LIKTYSGHGHEVLDAALSS-DNSKFAS-----CGGDKAVQVW 86 (307)
T ss_pred EEccCCCEEEE--cCCCceEEeecc-ccc-c-------eeeeecCCCceeeeccccc-ccccccc-----CCCCceEEEE
Confidence 56678886663 333678888832 222 1 4455566777778888888 8887765 4467789999
Q ss_pred ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecc---cCCCCceeCc
Q 004971 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFR---FDGSFPSFSP 428 (721)
Q Consensus 353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~---~~~~~~~~Sp 428 (721)
|+.+|+ .+.++.+|.+.+..+.|..+...++..+.+.. +..++-++. .+++..+. -....+.++
T Consensus 87 DV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s---------~r~wDCRS~s~ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 87 DVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSS---------VRLWDCRSRSFEPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred EcccCe--eeeecccccceeeEEEecCcceEEEeccccce---------eEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence 999998 66777888888999999988887776655554 333343322 12222221 111122222
Q ss_pred CCCEEEEE-eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971 429 KGDRIAFV-EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506 (721)
Q Consensus 429 DG~~la~~-~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 506 (721)
+..|+.. .++.+..||+.-|....-. ...+..+.||+||+.++..+ -+..+++.+-+... .+...
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~-------l~stlrLlDk~tGk-----lL~sY 221 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS-------LDSTLRLLDKETGK-----LLKSY 221 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee-------ccceeeecccchhH-----HHHHh
Confidence 3333333 4788999999877643322 56788999999999988876 35666665544322 22222
Q ss_pred ccCCCC--CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC-ceeeEEccCCCEEEEEEcc
Q 004971 507 TTNGKN--NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 507 ~~~~~~--~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~SpDG~~l~~~~~~ 578 (721)
..+... -....++..-..++..++ +..+|.||+..+.. +..+...... +..+++.|.-..++.+...
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~--~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSE---DGKVYFWDLVDETQ--ISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred cccccceeeeeeeecccceeEEeccC---CceEEEEEecccee--eeeeccCCceeEEeeecccCccceeEecCC
Confidence 233211 223455554455555555 78899999987664 4445443332 5778888887666666554
No 157
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.8e-08 Score=93.79 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=153.4
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTRE 396 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~ 396 (721)
...+..+++ +|.+++. |+.+..|++||+.... ++.....|.+.+..+.|+++-. .|+...+++.
T Consensus 43 ~~sitavAV---s~~~~aS-----GssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~---- 108 (362)
T KOG0294|consen 43 AGSITALAV---SGPYVAS-----GSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH---- 108 (362)
T ss_pred ccceeEEEe---cceeEec-----cCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCc----
Confidence 334455566 7788776 5566779999998776 5555566778888888888775 6776665555
Q ss_pred CCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971 397 DGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV 471 (721)
Q Consensus 397 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l 471 (721)
+.+++...- ...+......+..++.+|.|+....+ ++..+.+||+-.|+...+. ......+.|+|.|.++
T Consensus 109 -----i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 109 -----IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF 183 (362)
T ss_pred -----EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence 333333222 11222233446678999999754444 5888999999877654443 4556679999999998
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
++.. ...+.||.++... ....+... .......|- ++..|++..+ +..|..+|-+++.+ +.
T Consensus 184 ~v~~--------~~~i~i~q~d~A~-----v~~~i~~~-~r~l~~~~l-~~~~L~vG~d---~~~i~~~D~ds~~~--~~ 243 (362)
T KOG0294|consen 184 VVSG--------RNKIDIYQLDNAS-----VFREIENP-KRILCATFL-DGSELLVGGD---NEWISLKDTDSDTP--LT 243 (362)
T ss_pred EEEe--------ccEEEEEecccHh-----Hhhhhhcc-ccceeeeec-CCceEEEecC---CceEEEeccCCCcc--ce
Confidence 8875 4678888887643 22222222 123333343 5666777665 67899999987664 66
Q ss_pred ECcCCCcCceeeE--EccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 552 RLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 552 ~l~~~~~~~~~~~--~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.+..+...+-.+. -.|++.+|+.++.++ .|.+||++..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG-------~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDG-------FIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCc-------eEEEEEcccc
Confidence 6666766655554 367888898888885 7888888654
No 158
>PRK10115 protease 2; Provisional
Probab=98.97 E-value=9.1e-07 Score=100.27 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=157.9
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.....+|| ||++|+|.....|.+...|++.|+.+|+. ..+. ... ..++|++|++.|+|...+... ...
T Consensus 129 l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----~~~-~~~~w~~D~~~~~y~~~~~~~---~~~ 198 (686)
T PRK10115 129 LGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----NVE-PSFVWANDSWTFYYVRKHPVT---LLP 198 (686)
T ss_pred EeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----Ccc-eEEEEeeCCCEEEEEEecCCC---CCC
Confidence 44677899 99999999988899999999999998862 2221 112 358999999999998875321 011
Q ss_pred ceeEEEeccCCCCcc-eeccc-CCC---CceeCcCCCEEEEE----eCCcEEEEEC--CCCceEEEe-ecCceeeEEcCC
Q 004971 400 NQLLLENIKSPLPDI-SLFRF-DGS---FPSFSPKGDRIAFV----EFPGVYVVNS--DGSNRRQVY-FKNAFSTVWDPV 467 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~-~~~~~-~~~---~~~~SpDG~~la~~----~~~~l~v~d~--~~g~~~~l~-~~~~~~~~~spd 467 (721)
.++|..++.++.... ..+.. ... ....+.|++++++. ..+.+++++. ..++.+.+. ......+.....
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY 278 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC
Confidence 578999988773221 12221 111 11235588887754 2467888884 334433333 111122233344
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-C-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-G-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
+..+++.++. +..+..|+.++.... ...+.+... . .....+.++ +++|++.....+...|++++..++
T Consensus 279 ~~~ly~~tn~-----~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 279 QHRFYLRSNR-----HGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred CCEEEEEEcC-----CCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC
Confidence 5677777642 345667777776531 133444444 2 234445555 678999888888889999998765
Q ss_pred cccceEECc-CCCcCceeeEEc--cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 546 EGYGLHRLT-EGPWSDTMCNWS--PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 546 ~~~~~~~l~-~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
. +..+. ........+.++ +++..+++..... .....+|.+|+.+++.+.+..
T Consensus 349 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 349 E---VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSM---TTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred c---eEEecCCCCceEeeecccCCCCCceEEEEEecC---CCCCEEEEEECCCCcEEEEEe
Confidence 5 55554 222222233344 5666666655543 355699999999887666654
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5e-08 Score=100.46 Aligned_cols=260 Identities=13% Similarity=0.110 Sum_probs=158.3
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
+...+..+.+.| .|.+|+. |++++.+++|.+.||.......+ ...+.+++|+|.++.-+.+...+.
T Consensus 399 Htg~Vr~iSvdp-~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~----- 464 (733)
T KOG0650|consen 399 HTGLVRSISVDP-SGEWLAS-----GSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGE----- 464 (733)
T ss_pred cCCeEEEEEecC-Ccceeee-----cCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecC-----
Confidence 344566788899 9999887 66778899999999986544433 567889999999876444433333
Q ss_pred CcceeEEEeccCCCCcceecccCC---CCc-eeCcCCCEEEEEeCCcEEEEECC------CCceEEEe-ecCceeeEEcC
Q 004971 398 GNNQLLLENIKSPLPDISLFRFDG---SFP-SFSPKGDRIAFVEFPGVYVVNSD------GSNRRQVY-FKNAFSTVWDP 466 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~~~~~---~~~-~~SpDG~~la~~~~~~l~v~d~~------~g~~~~l~-~~~~~~~~~sp 466 (721)
. +.+.+..-+. .+....... ..+ .=.||+ .+..|.-. .+....|. ...+.++.|..
T Consensus 465 --~-~~ivnp~~G~-~~e~~~t~ell~~~~~~~~p~~---------~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 465 --C-VLIVNPIFGD-RLEVGPTKELLASAPNESEPDA---------AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred --c-eEEeCccccc-hhhhcchhhhhhcCCCccCCcc---------cceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 1 3333221110 000000000 000 011222 23333222 11122333 56788999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
+|.+|+.++.. .....+.|+.+.... ....+....+.+....|+|-.-+|++++ ...|.+||+...+
T Consensus 532 kGDYlatV~~~----~~~~~VliHQLSK~~-----sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqe 598 (733)
T KOG0650|consen 532 KGDYLATVMPD----SGNKSVLIHQLSKRK-----SQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQE 598 (733)
T ss_pred CCceEEEeccC----CCcceEEEEeccccc-----ccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHH
Confidence 99999998731 233455555554432 1233434446778889999999998888 4789999998766
Q ss_pred ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeE----------E
Q 004971 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPY----------F 615 (721)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~----------~ 615 (721)
. ++.+..+...+..++.+|.|..|++++.+. .+..+|++-+ ++.+-+.. |...+.+++ -
T Consensus 599 l--vKkL~tg~kwiS~msihp~GDnli~gs~d~-------k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 599 L--VKKLLTGSKWISSMSIHPNGDNLILGSYDK-------KMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred H--HHHHhcCCeeeeeeeecCCCCeEEEecCCC-------eeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeee
Confidence 4 666776766778999999999999999885 6777777544 22222211 333333333 4
Q ss_pred CCCCCEEEEEEe
Q 004971 616 SPDGKSIVFTSD 627 (721)
Q Consensus 616 SpDG~~l~~~~~ 627 (721)
|+||..++|...
T Consensus 669 sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 669 SDDGTVIVFHGM 680 (733)
T ss_pred cCCCcEEEEeee
Confidence 667777666554
No 160
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.95 E-value=1.3e-06 Score=86.79 Aligned_cols=294 Identities=13% Similarity=0.093 Sum_probs=161.3
Q ss_pred CEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee--CCCCCCCCcceeEEEeccCC
Q 004971 333 KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR--GGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 333 ~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~ 410 (721)
++++.....-..-..+++++|.++++..-... .+....+..||||+.++...-- ....+... .-+.+++..+-
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt-Dvv~~~D~~TL 77 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID----TGFLGNVALSPDGKTIYVAETFYSRGTRGERT-DVVEIWDTQTL 77 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEE-EEEEEEETTTT
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEee----cccCCceeECCCCCEEEEEEEEEeccccccce-eEEEEEecCcC
Confidence 45555433111123579999999887432221 3344568899999999864321 11110000 12334443332
Q ss_pred --CCcceecc-------cCCCCceeCcCCCEEEEEe---CCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEecC
Q 004971 411 --LPDISLFR-------FDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 411 --~~~~~~~~-------~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~~ 477 (721)
..++.+.. ......++|.||+++++.+ ...|.++|++.++. ..+....+..+--++.. .++..+
T Consensus 78 ~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~-~F~~lC-- 154 (342)
T PF06433_consen 78 SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR-GFSMLC-- 154 (342)
T ss_dssp EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT-EEEEEE--
T ss_pred cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCC-ceEEEe--
Confidence 11111111 1123468999999988873 67899999998874 34443333333223332 344444
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEccc---CC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTT---NG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
.++...-+.++.++. ..++.+. .. .....++++.++.+++|.+- ...||-.|+.+...+....
T Consensus 155 -----~DGsl~~v~Ld~~Gk----~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 155 -----GDGSLLTVTLDADGK----EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp -----TTSCEEEEEETSTSS----EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEE
T ss_pred -----cCCceEEEEECCCCC----EeEeeccccCCCCcccccccceECCCCeEEEEec---CCEEEEEeccCCcccccCc
Confidence 467777777776664 2222211 11 12245678888888999887 7889999998766322222
Q ss_pred CcC-------C---CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971 553 LTE-------G---PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 553 l~~-------~---~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG 619 (721)
+.. . ++....+++++..++|++....+.. ......||.+|+++++...-.. ....+.+++.|.|.
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDD 300 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSS
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCC
Confidence 211 1 1223457888888888876654322 3456899999999987544333 22346689999999
Q ss_pred CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 620 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+=++|+-.... ..|+++|..+|+..+-..
T Consensus 301 ~P~L~~~~~~~---------------~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 301 KPLLYALSAGD---------------GTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp S-EEEEEETTT---------------TEEEEEETTT--EEEEE-
T ss_pred CcEEEEEcCCC---------------CeEEEEeCcCCcEEeehh
Confidence 87776654432 259999998887654433
No 161
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.95 E-value=6.6e-08 Score=96.71 Aligned_cols=277 Identities=16% Similarity=0.053 Sum_probs=168.8
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE--Eeec-------------c-cCCCCcccCcE
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI--ELTR-------------F-VSPKTHHLNPF 376 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~--~l~~-------------~-~~~~~~~~~~~ 376 (721)
..+-.|...+..++++| |+++++-++ .+..|.-|+..+|+.. .+.. . ..|...+...+
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 33445556677889999 998877643 3346888888887632 1110 0 13445567889
Q ss_pred EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-E
Q 004971 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-R 452 (721)
Q Consensus 377 ~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~ 452 (721)
.|+||++|++...+.- +.+++..+. ...+...+..+..++|-..-..++.. .+..+.+|+++.-.. .
T Consensus 210 vS~Dgkylatgg~d~~---------v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRH---------VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred EcCCCcEEEecCCCce---------EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 9999999998544333 445554433 33333344444556665444455555 477889998875432 2
Q ss_pred EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEE
Q 004971 453 QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRS 529 (721)
Q Consensus 453 ~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s 529 (721)
.++ ...+..+.-..-++-+-+. ..+..+++|.+.... +.+.. +.+....++|-.| ..++..+
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVG-------grDrT~rlwKi~ees-------qlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVG-------GRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred HHhCCccceeeechhcccceEEec-------cccceeEEEeccccc-------eeeeeCCCCCeeeEEEecc-cceeecc
Confidence 222 3344455544444444333 257899999995432 22222 2234555566544 4566666
Q ss_pred eeCCceeEEEEECCCCcccceEECcCC----------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC--c
Q 004971 530 TRTGYKNLYIMDAEGGEGYGLHRLTEG----------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT--G 597 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~----------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~--~ 597 (721)
+ +..|++|++...++--..++..+ +..++.++..|....++.++.++ .|.+|-+..+ .
T Consensus 346 d---nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G-------~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 346 D---NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG-------CVRLWKIEDGLRA 415 (479)
T ss_pred C---CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC-------ceEEEEecCCccc
Confidence 6 78999999987765222222211 12457788889888887777764 7888888776 3
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
...+......+.++.++|+++|++|+......
T Consensus 416 i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 416 INLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 44444444567889999999999887765443
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.95 E-value=6.5e-08 Score=97.35 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=136.1
Q ss_pred CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCC
Q 004971 438 FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNN 513 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~ 513 (721)
.+.+.+||+...... .+. ...+..+.+.-...+||.++ ..+.+.|..+..+. ....++... ..+
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-------~gGdiiih~~~t~~-----~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-------DGGDIIIHGTKTKQ-----KTTTFTIDSGQSV 167 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-------cCCcEEEEecccCc-----cccceecCCCCeE
Confidence 567899999854332 222 34567788888899999887 34677776665543 334454443 355
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
..+.|||-.+.|+..... +..+.+||+.+..+ .......+......+.|||-...|++.-.-. ..|++||.
T Consensus 168 Rll~ys~skr~lL~~asd--~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsne~l~vsVG~D------kki~~yD~ 238 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSNEALLVSVGYD------KKINIYDI 238 (673)
T ss_pred EEeecccccceeeEeecc--CCeEEEEeccCCCc-ccchhhhccCCcCcceecCCccceEEEeccc------ceEEEeec
Confidence 678999999988776543 56788999986553 1122223444556789999877666554322 48999999
Q ss_pred CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEeccCCCCCCCc
Q 004971 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQNSFEDGTP 671 (721)
Q Consensus 594 ~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~~~~~~~~~ 671 (721)
...+...... .......++|+++|.+|+....++ +|+.||+.+.+ ++.+..|...+...
T Consensus 239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G-----------------~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKG-----------------ELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred ccccccceee--ecCCcceeeecCCceEEEeecCCc-----------------eEEEEecccCCCCceEeeecccceeEE
Confidence 8765443322 345678899999999998766654 59999998754 46777788888888
Q ss_pred eecC
Q 004971 672 AWGP 675 (721)
Q Consensus 672 ~~sp 675 (721)
+|-|
T Consensus 300 afq~ 303 (673)
T KOG4378|consen 300 AFQP 303 (673)
T ss_pred Eeee
Confidence 8855
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.94 E-value=6.4e-08 Score=95.31 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=156.4
Q ss_pred cCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCC-------ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 323 FTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKN-------KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 323 ~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg-------~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
..+.|.+ +.. .++. ++.+..|++|-+..+ +..-+..+..|...+..+.|+|+|..|+...+.+.
T Consensus 17 ~s~dfq~-n~~~~laT-----~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-- 88 (434)
T KOG1009|consen 17 YSVDFQK-NSLNKLAT-----AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-- 88 (434)
T ss_pred EEEEecc-Ccccceec-----ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce--
Confidence 4445555 443 4444 223444666654432 22334445566777888999999999987655444
Q ss_pred CCCCcceeEEEe------ccC-----CCC-----cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--
Q 004971 395 REDGNNQLLLEN------IKS-----PLP-----DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-- 455 (721)
Q Consensus 395 ~~~~~~~l~~~~------~~~-----~~~-----~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-- 455 (721)
.-+|... -++ ++. .+.....+...++|+||+..+++.+ +..+++||+..|....+.
T Consensus 89 -----v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 89 -----VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred -----EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 2233222 011 000 0111223455689999999998884 889999999988876665
Q ss_pred -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC---------------CCCccceEEcccCC---CCCcce
Q 004971 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD---------------VDGVSAVRRLTTNG---KNNAFP 516 (721)
Q Consensus 456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~---------------~~~~~~~~~l~~~~---~~~~~~ 516 (721)
...+..++|.|-+++++..+..+ +.+.+.+.... ....+...+|...+ .....+
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr-------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDR-------HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred cccccceeecchhhhhhhhhccCc-------ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 45677899999999998765321 12222221111 00112223333322 233457
Q ss_pred EEccCCCEEEEEEeeC---C---ceeEEEEECCCCcccceEECcCCCcCceeeEEc------------------cCCCEE
Q 004971 517 SVSPDGKWIVFRSTRT---G---YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS------------------PDGEWI 572 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~---g---~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S------------------pDG~~l 572 (721)
+|+|||..|+.-+..- + .+.-|+++-..-+ +...++....-....+.|+ |-+-.+
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 9999999887654321 1 2244555433211 1133333222111222222 222223
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+++..+ .+|+||.+.-++..+...-|...+..++||+||..|+.++.++
T Consensus 316 aiAt~~--------svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 316 AIATKN--------SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEeecc--------eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 333333 7999998776655554444777889999999999999888776
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=104.95 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=161.8
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+.+++|.| ||..++.+.. .++.+||...|. .+....+|...+..++||.||++++....+.. .
T Consensus 14 ci~d~afkP-DGsqL~lAAg------~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~-------V 77 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAG------SRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKS-------V 77 (1081)
T ss_pred chheeEECC-CCceEEEecC------CEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCcee-------E
Confidence 467899999 9999988542 349999999887 55556777888899999999999876544443 2
Q ss_pred eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCC
Q 004971 401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPE 479 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~ 479 (721)
.+|...+.+-.+ ....-...-+.|.|-...|+..+-++.-+|..+......-. ...+...+|..||++++...
T Consensus 78 I~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~---- 151 (1081)
T KOG1538|consen 78 IIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM---- 151 (1081)
T ss_pred EEecccccceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec----
Confidence 233322221100 00111123357777777777775555555655443322211 34567889999999999875
Q ss_pred CCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCC-----EEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 480 FASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGK-----WIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~-----~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
.++++.|- +..+. +...+.. ....+.+.+|+|... .+++... ...|-.+.+++.. +.
T Consensus 152 ---~nGTIsiR--Nk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW---~qTLSFy~LsG~~---Ig 216 (1081)
T KOG1538|consen 152 ---FNGTISIR--NKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW---GQTLSFYQLSGKQ---IG 216 (1081)
T ss_pred ---cCceEEee--cCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec---cceeEEEEeccee---ec
Confidence 45666665 22221 2233333 224567778888633 3444444 4455555565332 21
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.-..-.+...-+++-|+|.+++.+..+. .+.++.-++ .++-.. .....++.++..|++++++....+++
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk-------~L~~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDK-------QLSLFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCC-------ceEEEeecC---eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 1111123345678889999999998874 566665444 333221 13456778899999999998888875
No 165
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.4e-08 Score=95.72 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=123.1
Q ss_pred CCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe-EEEEecCCCCCCCCCcEEEEEEEc
Q 004971 420 DGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA-VVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~-la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
..+.++|++-=-.+++. .+..|.+|+-....+..|. ...+..++|-|.+.. |++.+ ..-+-||..+.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW~~s~ 171 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIWSDSR 171 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee--------cceeEEEEcCc
Confidence 34567888732223333 4777889988776666666 567889999997654 55554 35677777664
Q ss_pred cCCCC-------ccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEE
Q 004971 495 DDVDG-------VSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNW 565 (721)
Q Consensus 495 ~~~~~-------~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~ 565 (721)
..... ......+...+ ..+..++|.+||..++.++-. +..|.+||+++|.. .+|. .+.+....+.|
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g--sssi~iWdpdtg~~---~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG--SSSIMIWDPDTGQK---IPLIPKGLGGFSLLKW 246 (445)
T ss_pred ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC--cceEEEEcCCCCCc---ccccccCCCceeeEEE
Confidence 33200 00111111111 356778999999999888753 67899999999884 3443 44555678999
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
||||.+|+.+.-+. ...+|... .....+... ..+.+....|||+|++|+|+....
T Consensus 247 SPdgd~lfaAt~da-------vfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 247 SPDGDVLFAATCDA-------VFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cCCCCEEEEecccc-------eeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEcCC
Confidence 99999998888763 45556332 222222222 345888899999999999988755
No 166
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.94 E-value=6.7e-08 Score=106.34 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=125.1
Q ss_pred EEEEeCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 433 IAFVEFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 433 la~~~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
++...++.|..++ ++....+. ...+..++.||||++++|+..... ...+....||..+..+ ..+.++
T Consensus 323 ~~~v~~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~gg-----~~~~lt 394 (591)
T PRK13616 323 LHALVDGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPLGG-----VAVQVL 394 (591)
T ss_pred ceEEECCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeCCC-----cceeee
Confidence 3344466666553 33333333 235678999999999999874222 1234567888888644 346666
Q ss_pred cCCCCCcceEEccCCCEEEEEEee---------CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTR---------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~---------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
... ....|.|||||++|+|..+. .+..+|+++++++++. .. .....+..+.|||||++|+|....
T Consensus 395 ~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~---~~--~~~g~Issl~wSpDG~RiA~i~~g 468 (591)
T PRK13616 395 EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV---AS--RVPGPISELQLSRDGVRAAMIIGG 468 (591)
T ss_pred cCC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh---hh--ccCCCcCeEEECCCCCEEEEEECC
Confidence 555 47889999999999888643 2445788888887773 32 223347899999999999998842
Q ss_pred CCCCCCceeEEE---EecCCCceEEeee-----cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971 579 DNPGSGSFEMYL---IHPNGTGLRKLIQ-----SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650 (721)
Q Consensus 579 ~~~~~~~~~i~~---~d~~~~~~~~l~~-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (721)
+||+ ....+|+ ..++. ........++.|..|++.+ ........ .+|.
T Consensus 469 --------~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~---------------~v~~ 523 (591)
T PRK13616 469 --------KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEH---------------PVWY 523 (591)
T ss_pred --------EEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCC---------------ceEE
Confidence 6877 5555665 33421 1122234778999999954 44443332 4999
Q ss_pred EEcCCCCeEEec
Q 004971 651 IKLDGSDLKRLT 662 (721)
Q Consensus 651 ~d~~~~~~~~lt 662 (721)
++++|...+.+.
T Consensus 524 v~vDG~~~~~~~ 535 (591)
T PRK13616 524 VNLDGSNSDALP 535 (591)
T ss_pred EecCCccccccC
Confidence 999988766543
No 167
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.93 E-value=1.2e-08 Score=97.94 Aligned_cols=252 Identities=14% Similarity=0.061 Sum_probs=163.1
Q ss_pred CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971 288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367 (721)
Q Consensus 288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~ 367 (721)
.+..+.||+..... ....++++...+.-+.+ |.+.|+. |+.+..+.+||..+|+ .+.....
T Consensus 215 rDnTikiWD~n~~~---------c~~~L~GHtGSVLCLqy---d~rviis-----GSSDsTvrvWDv~tge--~l~tlih 275 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLE---------CLKILTGHTGSVLCLQY---DERVIVS-----GSSDSTVRVWDVNTGE--PLNTLIH 275 (499)
T ss_pred ccCceEEeccccHH---------HHHhhhcCCCcEEeeec---cceEEEe-----cCCCceEEEEeccCCc--hhhHHhh
Confidence 47788999654433 45566777665555556 7664444 5677889999999998 4444445
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee------cccCCCCceeCcCCCEEEEE-eCCc
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFV-EFPG 440 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~-~~~~ 440 (721)
|-..+..+.|+ ..+++..+.+.. +.++++..+. .++. ....+..+. -|.++|+.+ ++..
T Consensus 276 HceaVLhlrf~--ng~mvtcSkDrs---------iaVWdm~sps-~it~rrVLvGHrAaVNvVd--fd~kyIVsASgDRT 341 (499)
T KOG0281|consen 276 HCEAVLHLRFS--NGYMVTCSKDRS---------IAVWDMASPT-DITLRRVLVGHRAAVNVVD--FDDKYIVSASGDRT 341 (499)
T ss_pred hcceeEEEEEe--CCEEEEecCCce---------eEEEeccCch-HHHHHHHHhhhhhheeeec--cccceEEEecCCce
Confidence 56667778887 456666555444 4455555442 1111 111222233 356677776 5889
Q ss_pred EEEEECCCCceEEEeecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971 441 VYVVNSDGSNRRQVYFKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519 (721)
Q Consensus 441 l~v~d~~~g~~~~l~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 519 (721)
|.+|+..+++..++..+.-..++--. .|+.++..+ .+..++||++.... .++.|..++.-+....|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGS-------SDntIRlwdi~~G~-----cLRvLeGHEeLvRciRF- 408 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS-------SDNTIRLWDIECGA-----CLRVLEGHEELVRCIRF- 408 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhccCeEEEecC-------CCceEEEEeccccH-----HHHHHhchHHhhhheee-
Confidence 99999999986655534333333333 344444443 67899999998754 67778888766777777
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCccc-------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
|.++|+...- +..|.+||+..+... .+..+..+.+.+..+.|. ..+|+.++.+. .|.+||
T Consensus 409 -d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd-------tILiWd 475 (499)
T KOG0281|consen 409 -DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD-------TILIWD 475 (499)
T ss_pred -cCceeeeccc---cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC-------eEEEEE
Confidence 5788987776 788999999877531 122334556667778874 56777776664 899999
Q ss_pred cCCCce
Q 004971 593 PNGTGL 598 (721)
Q Consensus 593 ~~~~~~ 598 (721)
...+..
T Consensus 476 Fl~~~~ 481 (499)
T KOG0281|consen 476 FLNGPP 481 (499)
T ss_pred cCCCCc
Confidence 877643
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.93 E-value=1.2e-07 Score=90.71 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=121.9
Q ss_pred CceeCcCCCEEEEEeCCcEEEEECC-CCceE----EEe------ecCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEE
Q 004971 423 FPSFSPKGDRIAFVEFPGVYVVNSD-GSNRR----QVY------FKNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 423 ~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~----~l~------~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~ 490 (721)
.++|||||.+|+..-+..|.++|+. .|... .++ .+.+..++++|-.. .+++.+. ...+.||
T Consensus 163 sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~~giy 235 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQRVGIY 235 (406)
T ss_pred eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cceeeeE
Confidence 4799999999988888899999983 34311 111 34567899999655 6666653 3456666
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc-Cc--eeeEEcc
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW-SD--TMCNWSP 567 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~--~~~~~Sp 567 (721)
.-+..+ ....+..+.+.+.++.|.+||.+|+..+.. +..|..||+..-.. .+-.|..+.. .. ..+...|
T Consensus 236 ~~~~~~-----pl~llggh~gGvThL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 236 NDDGRR-----PLQLLGGHGGGVTHLQWCEDGNKLFSGARK--DDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDP 307 (406)
T ss_pred ecCCCC-----ceeeecccCCCeeeEEeccCcCeecccccC--CCeEEEEeehhccc-hhhhhhhhccCccceEEEecCC
Confidence 655433 556666777889999999999999877654 56899999875331 1222322222 11 2345579
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
+|++|+.+..++ .|.+||+++ |....++.. +..-++.+++.|--..++.++
T Consensus 308 ~~~~LasG~tdG-------~V~vwdlk~~gn~~sv~~~-~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 308 KGEILASGDTDG-------SVRVWDLKDLGNEVSVTGN-YSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred CCceeeccCCCc-------cEEEEecCCCCCccccccc-ccccccceecCcccceeeecc
Confidence 999998887775 899999987 554444432 455567788888755555444
No 169
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=4.5e-08 Score=98.61 Aligned_cols=258 Identities=14% Similarity=0.051 Sum_probs=170.8
Q ss_pred CcccCcEEcCCCCE-EEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971 370 THHLNPFISPDSSR-VGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD 447 (721)
Q Consensus 370 ~~~~~~~~Spdg~~-l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~ 447 (721)
..+..+.|||..-+ ++.++. .. .+||........+.+..+........|-.||+.++... .+.+.++|..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~r-------vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VR-------VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cE-------EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 34567788885433 333222 22 33444333333333333444455678889998888774 6789999966
Q ss_pred CCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971 448 GSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524 (721)
Q Consensus 448 ~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~ 524 (721)
+... +.+. ...+....|+|++..++... .++..+.+|+++... ....+..+...+...+|+|-...
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~------sDd~v~k~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSG------SDDKVVKYWDLSTAY-----VQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEec------CCCceEEEEEcCCcE-----EEEEecCCcceeEeeccccCCCe
Confidence 5332 2222 45667788999988888776 367778888887643 23466777778888999999998
Q ss_pred EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
|++...- +..|.+||...... .+..+. +...+..+.+-|.|..|+.++.. .+.+||+.+|........
T Consensus 168 ivvtGsY--Dg~vrl~DtR~~~~-~v~eln-hg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G~qll~~~~ 235 (487)
T KOG0310|consen 168 IVVTGSY--DGKVRLWDTRSLTS-RVVELN-HGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTGGQLLTSMF 235 (487)
T ss_pred EEEecCC--CceEEEEEeccCCc-eeEEec-CCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCCceehhhhh
Confidence 8887654 55788899876531 133343 34456788899999988877765 799999985543221111
Q ss_pred CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecC
Q 004971 605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp 675 (721)
.|...++++.+.-|++.|+..+-+. ++-++|+..=++..=-...+.+.+.+.||
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~-----------------~VKVfd~t~~Kvv~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDR-----------------HVKVFDTTNYKVVHSWKYPGPVLSIAVSP 289 (487)
T ss_pred cccceEEEEEeecCCceEeeccccc-----------------ceEEEEccceEEEEeeecccceeeEEecC
Confidence 2667788999999999998877765 47777855544443334566677777787
No 170
>PRK10115 protease 2; Provisional
Probab=98.89 E-value=3.3e-06 Score=95.81 Aligned_cols=255 Identities=12% Similarity=0.094 Sum_probs=151.8
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-------CCcEEEE
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-------FPGVYVV 444 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-------~~~l~v~ 444 (721)
+..+.|||||++|++....++... ..+++.++.++.............++|++||+.|+|.. ...||++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~----~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQ----YGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEE----EEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 456789999999999876665332 56788888765311122111123489999999999982 1479999
Q ss_pred ECCCC--ceEEEeec---Cce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceE
Q 004971 445 NSDGS--NRRQVYFK---NAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPS 517 (721)
Q Consensus 445 d~~~g--~~~~l~~~---~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 517 (721)
++.++ +.+.|... ... ....+.|++++++.+.. ..+..+.++..+.... ....+.... .... .
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~--~ 274 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADA----EPFVFLPRRKDHEY--S 274 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCC----CceEEEECCCCCEE--E
Confidence 99888 44555521 122 23335599988866532 1234555555434322 223333322 2222 2
Q ss_pred EccCCCEEEEEEeeC-CceeEEEEECCC-CcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 518 VSPDGKWIVFRSTRT-GYKNLYIMDAEG-GEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 518 ~SpDg~~l~~~s~~~-g~~~l~~~d~~~-g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
+...+..+++.++.+ ....|..+++.+ ++ .+.+... ...+..+.++ +++|++...+. +...|++++.
T Consensus 275 ~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~----g~~~l~~~~~ 345 (686)
T PRK10115 275 LDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLF--TDWLVVEERQR----GLTSLRQINR 345 (686)
T ss_pred EEeCCCEEEEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEE--CCEEEEEEEeC----CEEEEEEEcC
Confidence 223356777777653 455788888873 33 3344433 2345566666 66888888774 7788999998
Q ss_pred CCCceEEeeecCCCCCcCCeEEC--CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 594 NGTGLRKLIQSGSAGRANHPYFS--PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 594 ~~~~~~~l~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.+++.+.+... .......+.++ +++..+++....-.. +.++|.+|+++++.+.|+.
T Consensus 346 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~-------------P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 346 KTREVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTT-------------PDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCCceEEecCC-CCceEeeecccCCCCCceEEEEEecCCC-------------CCEEEEEECCCCcEEEEEe
Confidence 77666665421 11222223344 556666555443332 3579999999988888876
No 171
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=9.5e-07 Score=86.81 Aligned_cols=220 Identities=18% Similarity=0.153 Sum_probs=145.3
Q ss_pred CCCceeCc-CCCEEEEEe--CCcEEEEECCCCceEEEe---ecCc--eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSP-KGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~Sp-DG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~--~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
+..++.+| ++..++|.. ..-+.++|..+++..+.. .+.. ..-.||+||++|+.+.+ +++...+.+-||+.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn--d~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN--DYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc--ccCCCcEEEEEEEC
Confidence 44567888 455566664 456888999988865443 2222 36899999999998754 45566778888887
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee------CC---------ceeEEEEECCCCcccceEECcC--
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------TG---------YKNLYIMDAEGGEGYGLHRLTE-- 555 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~------~g---------~~~l~~~d~~~g~~~~~~~l~~-- 555 (721)
...- ..+..+..+.-....+.+.|||+.|+++... .| ...|..+|..+|+......+..
T Consensus 85 ~~~~----~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 85 ARGY----RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred cCCc----EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 7221 2445566666566778999999999987632 11 3468888999998622233532
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-----CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-----GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+...+.++++++||.-++-...++.......-|.+++... ..+.+... ...+++.++++++||.+++.++.+.+
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 4456789999999985554444433222334455555433 22222211 12456788999999999999998886
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
. +.+||.++++......
T Consensus 240 ~----------------~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 R----------------VAVWDAATGRLLGSVP 256 (305)
T ss_pred E----------------EEEEECCCCCEeeccc
Confidence 3 8899999988765543
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=91.52 Aligned_cols=217 Identities=10% Similarity=0.013 Sum_probs=148.4
Q ss_pred cCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 419 FDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 419 ~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
.....++-+|+|.+|+.. -.+.||+|.+.+|....+. -..++.+.|+-||..|+..+ .++.+.+|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~l~~ 154 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-------KDGAVLVWLLTD 154 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-------CCccEEEEEEEe
Confidence 334556789999888777 5889999999999854333 35688999999999998876 689999997753
Q ss_pred cC----CCCccceEEcccCCCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971 495 DD----VDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 495 ~~----~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD 568 (721)
-- .........+..|.-.+..+...+. ..+|+.++. +..+.+||+..|.. +..+.. +..+..++.+|-
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~---D~t~k~wdlS~g~L--Llti~f-p~si~av~lDpa 228 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE---DRTIKLWDLSLGVL--LLTITF-PSSIKAVALDPA 228 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC---CceEEEEEecccee--eEEEec-CCcceeEEEccc
Confidence 11 0011233445555544555544443 456777777 88999999999985 444443 345688999999
Q ss_pred CCEEEEEEccCCCCCCceeEEEEecCCCc----------------eEEeeecCCCC--CcCCeEECCCCCEEEEEEecCC
Q 004971 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTG----------------LRKLIQSGSAG--RANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------------~~~l~~~~~~~--~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
++.++++..++ .||+.++.+-. ..+... ++.+ .+..++.+-||..|+..+.++
T Consensus 229 e~~~yiGt~~G-------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 229 ERVVYIGTEEG-------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred ccEEEecCCcc-------eEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCC-
Confidence 99888888775 67766653321 111111 2444 678899999999888766655
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCcee
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAW 673 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~ 673 (721)
.+-+||..+.+. +.++...+.+....+
T Consensus 300 ----------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 300 ----------------KVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ----------------CEEEEecchHHHHHHHhhhccccceeEe
Confidence 388899888764 555544455566666
No 173
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.86 E-value=1.2e-06 Score=85.73 Aligned_cols=271 Identities=15% Similarity=0.084 Sum_probs=166.0
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEc-CCC--CEEEEEEeeCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS-PDS--SRVGYHKCRGGST 394 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~S-pdg--~~l~~~~~~~~~~ 394 (721)
+.-.+..+.. .+++|+.. .+++.+++||++.....++ .++...+..++|- ++. ..++.++.+..
T Consensus 104 hdDWVSsv~~---~~~~Iltg-----sYDg~~riWd~~Gk~~~~~---~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt-- 170 (423)
T KOG0313|consen 104 HDDWVSSVKG---ASKWILTG-----SYDGTSRIWDLKGKSIKTI---VGHTGPIKSVAWVIKNSSSCLFVSASMDQT-- 170 (423)
T ss_pred chhhhhhhcc---cCceEEEe-----ecCCeeEEEecCCceEEEE---ecCCcceeeeEEEecCCccceEEEecCCce--
Confidence 3334555555 34788764 3556699999875433333 4556666655552 222 23555444444
Q ss_pred CCCCcceeEEEeccCCCCcce----ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce------------------
Q 004971 395 REDGNNQLLLENIKSPLPDIS----LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR------------------ 451 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~------------------ 451 (721)
..+|..+......... .....+..+...+||.+++..+ +..|-+|+......
T Consensus 171 -----l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 171 -----LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred -----EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 3444444322211111 1222334567789998888775 77888888321110
Q ss_pred -----EE---Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971 452 -----RQ---VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521 (721)
Q Consensus 452 -----~~---l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD 521 (721)
.. |. .+.+.++.|++ ...++.++ -+..++.|++.+.+ ....++... ......++|.
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S-------wDHTIk~WDletg~-----~~~~~~~~k-sl~~i~~~~~ 311 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS-------WDHTIKVWDLETGG-----LKSTLTTNK-SLNCISYSPL 311 (423)
T ss_pred cccccCceEEecccccceeeEEEcC-CCceEeec-------ccceEEEEEeeccc-----ceeeeecCc-ceeEeecccc
Confidence 00 11 24567889988 33444443 57899999999876 444444433 5667889999
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccce-EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
.+.|+..+. +..|.+||+.++.-..+ ..+..+...+..+.|+|-..++++..... ..+.+||+.+.+.-.
T Consensus 312 ~~Ll~~gss---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 312 SKLLASGSS---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------NTVKLWDVRSTKAPL 382 (423)
T ss_pred cceeeecCC---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC------CeEEEEEeccCCCcc
Confidence 999998887 88999999987753222 34556666788999999887666555432 389999997765222
Q ss_pred eeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
....++...+-.+.|. +|..|+..+.+..
T Consensus 383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred eeeccCCceEEEEecc-CCceEEeccCcce
Confidence 2223366777788887 6777777766654
No 174
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.85 E-value=4.2e-07 Score=95.49 Aligned_cols=238 Identities=13% Similarity=0.139 Sum_probs=153.1
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGST 394 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~ 394 (721)
+....++.+++|| ||++|+... --+.|+++++..-+ .+...+.|...+.++.+|.- +..|+....++
T Consensus 457 d~r~G~R~~~vSp-~gqhLAsGD-----r~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrd--- 525 (1080)
T KOG1408|consen 457 DSRFGFRALAVSP-DGQHLASGD-----RGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRD--- 525 (1080)
T ss_pred CcccceEEEEECC-CcceecccC-----ccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCC---
Confidence 3455678899999 999998742 22349999998654 33444556666766666632 22222211111
Q ss_pred CCCCcceeEEEeccCCC---CcceecccCCCCceeCcCC--CEEEEEeCCcEEEEECCC--CceEE-------EeecCce
Q 004971 395 REDGNNQLLLENIKSPL---PDISLFRFDGSFPSFSPKG--DRIAFVEFPGVYVVNSDG--SNRRQ-------VYFKNAF 460 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~SpDG--~~la~~~~~~l~v~d~~~--g~~~~-------l~~~~~~ 460 (721)
.-|.+.+....- ..+.........+.|.-.| .+++..+......++... +..+. +...-..
T Consensus 526 -----RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 526 -----RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred -----ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 124444443321 1122122223345555555 444444433333333322 11111 1144567
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC---CCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN---GKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
+++..|..++++.++ .+.+++||.+.... ..+.+... ++....+...|.|-||+.... +..|
T Consensus 601 Dm~Vdp~~k~v~t~c-------QDrnirif~i~sgK-----q~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl 665 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVC-------QDRNIRIFDIESGK-----QVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTL 665 (1080)
T ss_pred EeeeCCCcceEEEEe-------cccceEEEeccccc-----eeeeecccccCCCceEEEEECCCccEEEEeec---CCce
Confidence 899999999999987 57899999987653 33333322 244455788999999999887 7899
Q ss_pred EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
.++|..+|+. +.+++.+...++.+.|++|-++|+..+.++ .||+|.+.
T Consensus 666 ~~~Df~sgEc--vA~m~GHsE~VTG~kF~nDCkHlISvsgDg-------CIFvW~lp 713 (1080)
T KOG1408|consen 666 CFVDFVSGEC--VAQMTGHSEAVTGVKFLNDCKHLISVSGDG-------CIFVWKLP 713 (1080)
T ss_pred EEEEeccchh--hhhhcCcchheeeeeecccchhheeecCCc-------eEEEEECc
Confidence 9999999997 888888888889999999999999988875 89999874
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=8.3e-08 Score=95.23 Aligned_cols=186 Identities=14% Similarity=0.078 Sum_probs=128.6
Q ss_pred CceeCcCCCEEEEE-eCCcEEEEECCCCc-eEEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 423 FPSFSPKGDRIAFV-EFPGVYVVNSDGSN-RRQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 423 ~~~~SpDG~~la~~-~~~~l~v~d~~~g~-~~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
.++++.||+.|+.. .++.+++|+...-. .... . ...+.++.|||||+.|++.+ .+ ..+||..+...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~-- 218 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGA-- 218 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCc--
Confidence 36899999999988 48889999944322 1111 1 56788999999999999986 23 88999988753
Q ss_pred CccceEEcccCC--CCCcceEEccCC---CEEEEEEeeC-Cc---eeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 499 GVSAVRRLTTNG--KNNAFPSVSPDG---KWIVFRSTRT-GY---KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 499 ~~~~~~~l~~~~--~~~~~~~~SpDg---~~l~~~s~~~-g~---~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
.+...+..+ .....+.|+-|+ ...+++.... +. .++.+|+-. ..-+.++.......+..++.|+||
T Consensus 219 ---~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 219 ---ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIKRFKSISSLAVSDDG 293 (398)
T ss_pred ---hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhhccCcceeEEEcCCC
Confidence 444555322 455668899887 3333333222 11 233344332 111133333334456899999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+.++.+..++ .|-+++..+-+...+.+..|...+..+.|+||.++++-.+.+..
T Consensus 294 kf~AlGT~dG-------sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 294 KFLALGTMDG-------SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cEEEEeccCC-------cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 9999999976 78999988777777776668888999999999999988776654
No 176
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.9e-06 Score=78.23 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=140.1
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCc------eEEEe--ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEE
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSN------RRQVY--FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~------~~~l~--~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~ 490 (721)
..+|||+|+.|+..+ +..|.++...... ...+. ++.+..++|-.| |..|+... ..+...||
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-------gagdc~iy 166 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-------GAGDCKIY 166 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-------CCCcceEE
Confidence 469999999888874 5667666554221 12222 566777777533 33333332 34667777
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------CcCceee
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMC 563 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~ 563 (721)
..+-..+ .....+..+.+.+.. -++=+|-.++..+. +..|..||+.-... +..+... ...+..+
T Consensus 167 ~tdc~~g---~~~~a~sghtghila-lyswn~~m~~sgsq---dktirfwdlrv~~~--v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 167 ITDCGRG---QGFHALSGHTGHILA-LYSWNGAMFASGSQ---DKTIRFWDLRVNSC--VNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred EeecCCC---CcceeecCCcccEEE-EEEecCcEEEccCC---CceEEEEeeeccce--eeeccCcccCCCcccceeEEE
Confidence 7776554 244566666543333 23334666666655 77899999875543 4444321 1346778
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 643 (721)
+..|.|+.|+.+..+. ...+||+.+++..+-... +...+..+.|||...|++..+.+..
T Consensus 238 ~vdpsgrll~sg~~ds-------sc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~------------- 296 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADS-------SCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMK------------- 296 (350)
T ss_pred EECCCcceeeeccCCC-------ceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccce-------------
Confidence 9999999988877764 788899999988776654 7788899999999898888887763
Q ss_pred CCccEEEEEcCCCCeEEec-----cCCCCCCCceecCCcCC
Q 004971 644 PYGEIFKIKLDGSDLKRLT-----QNSFEDGTPAWGPRFIR 679 (721)
Q Consensus 644 ~~~~l~~~d~~~~~~~~lt-----~~~~~~~~~~~sp~~l~ 679 (721)
|.+-|++|.-.++|. .|..-.....|.|.-+.
T Consensus 297 ----ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 297 ----IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred ----EEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 778888876444433 33333455778885333
No 177
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.80 E-value=1.9e-06 Score=81.59 Aligned_cols=273 Identities=12% Similarity=0.090 Sum_probs=157.8
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE----e-------e--cccCCCCcccCcEEcCCCCE
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE----L-------T--RFVSPKTHHLNPFISPDSSR 383 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~----l-------~--~~~~~~~~~~~~~~Spdg~~ 383 (721)
.++..+..+.+.++.|++++. |+.++.|.+||++.....+ + . ....|...+....|-|=..-
T Consensus 41 ~HgGsvNsL~id~tegrymlS-----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLS-----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEee-----cCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 455566777777756777665 5677789999997543110 0 0 01122333455566664444
Q ss_pred EEEEEeeCCCCCCCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCC--EEEEE--eCCcEEEEECCCCceEEEe---
Q 004971 384 VGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGD--RIAFV--EFPGVYVVNSDGSNRRQVY--- 455 (721)
Q Consensus 384 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~--~la~~--~~~~l~v~d~~~g~~~~l~--- 455 (721)
++..+.-+ -.+-+++..+-..... .....+...+|||=.. .|+.+ .+.+|.+.|+.+|....+.
T Consensus 116 mFtssSFD--------htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 116 MFTSSSFD--------HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred eeeccccc--------ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 43322211 1233444333211111 1122233456776442 33333 4778999999999876655
Q ss_pred ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--------------cCCCCCcceEEccC
Q 004971 456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--------------TNGKNNAFPSVSPD 521 (721)
Q Consensus 456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~SpD 521 (721)
.+.+..+.|||...+++++. ..++.+++|++....+ ..+.+. .+.+.+..++|+.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatg------saDg~irlWDiRrasg----cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATG------SADGAIRLWDIRRASG----CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred cCceEEEEeccCceeEEEec------CCCceEEEEEeecccc----eeEEeecccCccCccccccccccceeeeeeeccc
Confidence 56788999999999999886 4689999999987643 333222 22245677899999
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccce--EECcCCC--cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGL--HRLTEGP--WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~--~~l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
|++++.... +.++.+|+..+|+.... .++..+. ....... +.+...+++.-.+. .++++++-.+.
T Consensus 258 ~~~l~~~gt---d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~-------~lall~~~sgs 326 (397)
T KOG4283|consen 258 ARYLASCGT---DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG-------SLALLNLLEGS 326 (397)
T ss_pred chhhhhccC---ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC-------eEEEEEccCce
Confidence 999998776 77899999988863111 1111111 0001122 44544444444433 78888887776
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
..++... +...+...++.||-+..+.
T Consensus 327 ~ir~l~~-h~k~i~c~~~~~~fq~~~t 352 (397)
T KOG4283|consen 327 FVRRLST-HLKRINCAAYRPDFEQCFT 352 (397)
T ss_pred EEEeeec-ccceeeEEeecCchhhhhc
Confidence 5555443 4444555566666555443
No 178
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=8.8e-07 Score=88.13 Aligned_cols=209 Identities=19% Similarity=0.304 Sum_probs=129.5
Q ss_pred CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEeecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYFKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
.+.|.+....|+++. .+.|+.++..+++...+.......+.+. ++ ..|+++.. ....++ +..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~-g~l~v~~~--------~~~~~~--d~~~g-- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPD-GRLYVADS--------GGIAVV--DPDTG-- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTT-SEEEEEET--------TCEEEE--ETTTT--
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccC-CEEEEEEc--------CceEEE--ecCCC--
Confidence 478888666788884 7889999999988776663446677777 56 55555542 333333 54443
Q ss_pred ccceEEcccC------CCCCcceEEccCCCEEEEEEeeCC----c--eeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971 500 VSAVRRLTTN------GKNNAFPSVSPDGKWIVFRSTRTG----Y--KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 500 ~~~~~~l~~~------~~~~~~~~~SpDg~~l~~~s~~~g----~--~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp 567 (721)
+.+.+... ......+++.|||+ |++...... . ..||+++.+ ++ +..+...-...+.++|+|
T Consensus 71 --~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 71 --KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp --EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET
T ss_pred --cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECC
Confidence 33333322 13455689999999 666654321 1 679999998 66 444444434457899999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCCCc--e--EEeeecCCC--CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTG--L--RKLIQSGSA--GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~--~~l~~~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
||+.|+++.... ..|+.++++... . +++...... +....+++..+|+ |+++....+
T Consensus 144 dg~~lyv~ds~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~----------- 205 (246)
T PF08450_consen 144 DGKTLYVADSFN------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGG----------- 205 (246)
T ss_dssp TSSEEEEEETTT------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTT-----------
T ss_pred cchheeeccccc------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCC-----------
Confidence 999998877653 379999885322 1 222211122 2356789999997 444444332
Q ss_pred CCCCccEEEEEcCCCCeEEeccCCCCCCCceec
Q 004971 642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s 674 (721)
.|++++.+|.....+.-......+++|.
T Consensus 206 -----~I~~~~p~G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 206 -----RIVVFDPDGKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp -----EEEEEETTSCEEEEEE-SSSSEEEEEEE
T ss_pred -----EEEEECCCccEEEEEcCCCCCEEEEEEE
Confidence 5999999966556666543455667773
No 179
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.79 E-value=1.8e-07 Score=90.55 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=174.2
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVY 442 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~ 442 (721)
.+|.+.+.++++.|-..+++..+.+.. +-++|+.++...+++ .....+.+++|+---+|..++ +..+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~Drt---------ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRT---------IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCce---------eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 345667778888888887776655554 556677776443333 233456788998777777764 78899
Q ss_pred EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971 443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519 (721)
Q Consensus 443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 519 (721)
-||+...+..+-. -..+..++..|.-+.|+..+ .+..++||++.... .+..+..+...+..+.+.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g-------rDst~RvWDiRtr~-----~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG-------RDSTIRVWDIRTRA-----SVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecC-------CcceEEEeeecccc-----eEEEecCCCCcceeEEee
Confidence 9999877644333 34567788888888888775 57899999998865 677888888888888888
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|-.-+++..+. +..|.+||+..|+. +..++.+.-.+..++..|+...++.++.+ .|..|++..|+..
T Consensus 287 ~~dpqvit~S~---D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d--------nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 287 PTDPQVITGSH---DSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD--------NIKQWKLPEGEFL 353 (460)
T ss_pred cCCCceEEecC---CceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc--------cceeccCCccchh
Confidence 87778888887 78999999998886 77888888878889999987766666555 6899998877644
Q ss_pred EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.-. .++...+..++...||- +++..+++ .|+.||-.+|.
T Consensus 354 ~nl-sgh~~iintl~~nsD~v--~~~G~dng----------------~~~fwdwksg~ 392 (460)
T KOG0285|consen 354 QNL-SGHNAIINTLSVNSDGV--LVSGGDNG----------------SIMFWDWKSGH 392 (460)
T ss_pred hcc-ccccceeeeeeeccCce--EEEcCCce----------------EEEEEecCcCc
Confidence 332 23555666676666654 44555554 38888887763
No 180
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.7e-07 Score=83.46 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=140.2
Q ss_pred CCEEEEEEeeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCc--CCCEEEEEe-CCcEEEEECCCCceEEE
Q 004971 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSP--KGDRIAFVE-FPGVYVVNSDGSNRRQV 454 (721)
Q Consensus 381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~Sp--DG~~la~~~-~~~l~v~d~~~g~~~~l 454 (721)
|++|+.++.+.. .+|+-..-.++.. .++........++|.. -|..||..+ ++.+.+|.-.+|.-.++
T Consensus 23 gkrlATcsSD~t-------VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 23 GKRLATCSSDGT-------VKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred cceeeeecCCcc-------EEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 788888777666 3333332222211 1111122223345543 588888885 88999999988865444
Q ss_pred e-----ecCceeeEEcCCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---C--
Q 004971 455 Y-----FKNAFSTVWDPVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---G-- 522 (721)
Q Consensus 455 ~-----~~~~~~~~~spdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---g-- 522 (721)
. ...+..++|.|.+- .|+..+ .++++.|..++.++. ....+....+.-.+..+.|.|- |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~Lacas-------SDG~vsvl~~~~~g~--w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACAS-------SDGKVSVLTYDSSGG--WTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEee-------CCCcEEEEEEcCCCC--ccchhhhhccccccceeeecCcCCCccc
Confidence 3 56778889988754 444444 689999999988742 1222333445566777888886 5
Q ss_pred ---------CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC----CEEEEEEccCCCCCCceeEE
Q 004971 523 ---------KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG----EWIAFASDRDNPGSGSFEMY 589 (721)
Q Consensus 523 ---------~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~~~~~~i~ 589 (721)
++|+.... +..+.+|+.+.++-.....|..+...+..++|.|.- ..|+.++.++ ++.
T Consensus 167 ~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg-------~vi 236 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG-------TVI 236 (299)
T ss_pred cccCcccccceeeccCC---ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC-------cEE
Confidence 55665554 667778887776433234466777778889999974 3667666663 566
Q ss_pred EEecC--CCce-EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 590 LIHPN--GTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 590 ~~d~~--~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+|..+ .++- .++... .......+.||+.|..|++...++.
T Consensus 237 Iwt~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred EEEecCccCccccccccc-CCcceEEEEEeccccEEEEecCCcE
Confidence 65543 2221 122222 3455788999999999998877764
No 181
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=5.3e-06 Score=98.35 Aligned_cols=199 Identities=14% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee-------------------cCceeeEEcCCCCeEEEEecCCCC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF-------------------KNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~-------------------~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
..+++++++..|+++. ...|.++|+.++..+.+.. .....++++|++..++++..
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---- 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---- 702 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC----
Confidence 4468888888777773 5678999988877665531 12346889998778877642
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcccC---------------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTTN---------------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
.+..+ +.++...+ ....+... -.....++++|||++|+++... +.+|++||++++
T Consensus 703 --~~~~I--~v~d~~~g----~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg 772 (1057)
T PLN02919 703 --GQHQI--WEYNISDG----VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTG 772 (1057)
T ss_pred --CCCeE--EEEECCCC----eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCC
Confidence 23344 44443322 11111110 0234568999999998887653 568999999876
Q ss_pred cccceE-----------ECcCC--------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971 546 EGYGLH-----------RLTEG--------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606 (721)
Q Consensus 546 ~~~~~~-----------~l~~~--------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 606 (721)
....+. .+... -.....+++++||+ |+++.... ..|.+||.+++....+...+.
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N------~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN------HKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC------CEEEEEECCCCeEEEEeccCC
Confidence 521110 00000 00124678999997 55554332 389999998887665543211
Q ss_pred C------------CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 607 A------------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 607 ~------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
. .....+++++||+ |+++...++ .|.+||+++++.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn----------------~Irvid~~~~~~ 892 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNS----------------LIRYLDLNKGEA 892 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCC-EEEEECCCC----------------EEEEEECCCCcc
Confidence 0 1345679999997 444444332 499999988865
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.1e-08 Score=108.02 Aligned_cols=247 Identities=12% Similarity=0.083 Sum_probs=165.8
Q ss_pred CcccCceeecCCCCE---EEEEEecCCCCeeeEEEEECCC----CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 320 LHAFTPATSPGNNKF---IAVATRRPTSSYRHIELFDLVK----NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~---la~~~~~~g~~~~~l~l~dl~t----g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
.....++|++ .|.. |+. .|.+++.|.+||... ++...+.....|.+.+..+.|++.+.-++.... +.
T Consensus 65 ~rF~kL~W~~-~g~~~~GlIa----GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa-~~ 138 (1049)
T KOG0307|consen 65 NRFNKLAWGS-YGSHSHGLIA----GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA-DD 138 (1049)
T ss_pred ccceeeeecc-cCCCccceee----ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC-CC
Confidence 3456788988 8876 222 245667799999865 233345556677888999999999885444332 22
Q ss_pred CCCCCCcceeEEEeccCCCCccee----cccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCce-EEEe----ecCcee
Q 004971 393 STREDGNNQLLLENIKSPLPDISL----FRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSNR-RQVY----FKNAFS 461 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~~-~~l~----~~~~~~ 461 (721)
.+|+++|+.......+. ...++..++|...-++|... + .+...+||+...++ ..+. ......
T Consensus 139 -------geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 139 -------GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred -------CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 45899998765444333 22334456776544444333 3 56899999987643 2232 123568
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
+.|.||...-+++..+. .....+.+|++..... ..+.++.|...+..+.|.+.+..++..+.+ +.+|++|+
T Consensus 212 l~WhP~~aTql~~As~d---d~~PviqlWDlR~ass----P~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN 282 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGD---DSAPVIQLWDLRFASS----PLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWN 282 (1049)
T ss_pred eeeCCCCceeeeeecCC---CCCceeEeecccccCC----chhhhcccccceeeeccCCCCchhhhcccC--CCCeeEec
Confidence 99999987655554321 2456788999887664 677788888888999999988777777665 67899999
Q ss_pred CCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
.++|+. +..+.........+.|.|-.- .++.++.++ .|-+|.+.+..
T Consensus 283 ~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdg-------kI~I~sl~~~~ 330 (1049)
T KOG0307|consen 283 PNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDG-------KISIYSLQGTD 330 (1049)
T ss_pred CCCceE--eeecCCCCcceeeeeecCCCcchhhhheecc-------ceeeeeeecCC
Confidence 999986 777776555568899999765 666666664 56666665543
No 183
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.74 E-value=2.4e-06 Score=94.30 Aligned_cols=165 Identities=10% Similarity=0.030 Sum_probs=105.4
Q ss_pred CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe------------
Q 004971 370 THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------------ 437 (721)
Q Consensus 370 ~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~------------ 437 (721)
..+..+++||||+.++|........ ......||+.+..+....++... ....+.|||||++|+|+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3567899999999999987533311 11236789888654444443222 356799999999888873
Q ss_pred -CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCC-CC
Q 004971 438 -FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGK-NN 513 (721)
Q Consensus 438 -~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~-~~ 513 (721)
.+++++.++++++...-..+.+..+.|||||++|+|... +++.+-.+.....+. ....+.+..... ..
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG--------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC--------CEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 235677777776655422567999999999999999872 455554444332200 011122333222 24
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
..+.|..|++ |++... .++..+|.+++++..
T Consensus 500 ~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 500 VSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSN 530 (591)
T ss_pred ccceEecCCE-EEEEec-CCCCceEEEecCCcc
Confidence 6789999998 554433 456679999998655
No 184
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=6.7e-06 Score=80.94 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=138.7
Q ss_pred ccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec-cCC----cceeccCCeEEEEeccCC---CC
Q 004971 220 SPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE-NGG----WPCWVDESTLFFHRKSEE---DD 290 (721)
Q Consensus 220 ~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~-~~~----~~~ws~dg~l~~~~~~~~---~g 290 (721)
..+.+| ++..++|+. +.+ .-++++|..+|+..+.... .+. +-.||+||+++|+..++. .|
T Consensus 9 ~~a~~p~~~~avafaR-RPG----------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFAR-RPG----------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred ceeeCCCCCeEEEEEe-CCC----------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence 346788 556666754 444 5788999999997765533 332 559999999877654432 45
Q ss_pred cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEec------CC-------CCeeeEEEEECCCC
Q 004971 291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRR------PT-------SSYRHIELFDLVKN 357 (721)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~------~g-------~~~~~l~l~dl~tg 357 (721)
.+-||++. .+. .+...+..++...+.+.+.| ||+.|+++.-. .| .-...|..+|..+|
T Consensus 78 ~IgVyd~~--~~~------~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 78 VIGVYDAA--RGY------RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred EEEEEECc--CCc------EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 66778554 221 25556667788888999999 99999886410 01 12345778888999
Q ss_pred ceEEeecc--cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-------ecccCCCCceeCc
Q 004971 358 KFIELTRF--VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-------LFRFDGSFPSFSP 428 (721)
Q Consensus 358 ~~~~l~~~--~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~Sp 428 (721)
+...-..+ ..+...+..+++.+||..++-....+... ....-+.+.........+. .+..-...+++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC
Confidence 85443333 33456788999999997665544444321 1112222332222111111 1111123578999
Q ss_pred CCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCC
Q 004971 429 KGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVR 468 (721)
Q Consensus 429 DG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg 468 (721)
+|..++..+ .+.+.+||..+++..... -..+-.++..+++
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG 269 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc
Confidence 999998884 678999999999865544 2233344444555
No 185
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.74 E-value=9e-06 Score=77.50 Aligned_cols=271 Identities=10% Similarity=0.058 Sum_probs=158.9
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
.-.+..++||| --+.++.+ ++-+..+++|+++. |.... .....+.+.+....||.||..++....++.
T Consensus 27 ~DsIS~l~FSP-~~~~~~~A----~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~----- 95 (347)
T KOG0647|consen 27 EDSISALAFSP-QADNLLAA----GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ----- 95 (347)
T ss_pred ccchheeEecc-ccCceEEe----cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCc-----
Confidence 33567899999 66656543 33456699999976 33222 223345677889999999998888776665
Q ss_pred CcceeEEEeccCC-CCcceecccCCCCceeCcCCC--EEEEEe-CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeE
Q 004971 398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGD--RIAFVE-FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAV 471 (721)
Q Consensus 398 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~--~la~~~-~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~l 471 (721)
+.++++.++ ...+...........|-+... .|+..+ +..|..||.....+. .+. ++.+..+..- -..+
T Consensus 96 ----~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~ 169 (347)
T KOG0647|consen 96 ----AKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMA 169 (347)
T ss_pred ----eEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--Ccee
Confidence 456666655 223344444455566654443 334444 788999998766542 222 3333322221 1223
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
++.. .+..+.+|.+.-... +.+++... ......++..+|.+..+..+- ..++.+..++.+.++.-
T Consensus 170 vVat-------a~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsi---EGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 170 VVAT-------AERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSI---EGRVAIQYIDDPNPKDN 235 (347)
T ss_pred EEEe-------cCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeee---cceEEEEecCCCCccCc
Confidence 3332 345666666543221 23333322 245666777788777776665 44555555544321100
Q ss_pred EEC--------cCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971 551 HRL--------TEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621 (721)
Q Consensus 551 ~~l--------~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~ 621 (721)
-.+ ... -+.++.++|.|.=..|+....++ .+-.||-+... +..+...+...+..-.|+.+|+.
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG-------tf~FWDkdar~-kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG-------TFSFWDKDART-KLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCc-------eEEEecchhhh-hhhccCcCCCccceeEecCCCCE
Confidence 000 111 34567899999877888888875 77788866542 22222225667888899999999
Q ss_pred EEEEEec
Q 004971 622 IVFTSDY 628 (721)
Q Consensus 622 l~~~~~~ 628 (721)
++|+...
T Consensus 308 faYA~gY 314 (347)
T KOG0647|consen 308 FAYALGY 314 (347)
T ss_pred EEEEeec
Confidence 9887654
No 186
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.74 E-value=1e-06 Score=88.89 Aligned_cols=174 Identities=11% Similarity=0.129 Sum_probs=124.2
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
.+.+.-...+||.++ .++|.+..+.++... .+. ...+..+.|||-.+.++... .+++.+.+|++.....
T Consensus 126 ~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a------sd~G~VtlwDv~g~sp 199 (673)
T KOG4378|consen 126 YVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA------SDKGAVTLWDVQGMSP 199 (673)
T ss_pred EEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee------ccCCeEEEEeccCCCc
Confidence 345555667888885 678999988877643 333 23456789999999998876 4689999999886552
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.......|......++|||-+..|++.-.. +.+|++||...... ...|+.. .....++|+++|.+|+.+..
T Consensus 200 ----~~~~~~~HsAP~~gicfspsne~l~vsVG~--Dkki~~yD~~s~~s--~~~l~y~-~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 200 ----IFHASEAHSAPCRGICFSPSNEALLVSVGY--DKKINIYDIRSQAS--TDRLTYS-HPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred ----ccchhhhccCCcCcceecCCccceEEEecc--cceEEEeecccccc--cceeeec-CCcceeeecCCceEEEeecC
Confidence 333344556677889999988877665433 67899999986553 4555532 23468999999999998888
Q ss_pred cCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG 619 (721)
++ .|+.||+.+.+ +..+.. .+...+..++|-|.-
T Consensus 271 ~G-------~~i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KG-------ELIAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP 305 (673)
T ss_pred Cc-------eEEEEecccCCCCceEee-ecccceeEEEeeecc
Confidence 76 89999997754 344433 266678888886653
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.1e-07 Score=91.21 Aligned_cols=201 Identities=15% Similarity=0.059 Sum_probs=126.7
Q ss_pred cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-
Q 004971 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR- 451 (721)
Q Consensus 373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~- 451 (721)
..+++++||..|+....++. .+++-+.-............+...+.|||||+.|++++.....+|+.++|..
T Consensus 148 k~vaf~~~gs~latgg~dg~-------lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGT-------LRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccce-------EEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence 45889999999988766665 4444432212222222334456779999999999999877999999998842
Q ss_pred EEEe----ecCceeeEEcCCC---CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971 452 RQVY----FKNAFSTVWDPVR---EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524 (721)
Q Consensus 452 ~~l~----~~~~~~~~~spdg---~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~ 524 (721)
...+ +.......|+.|+ ...+++.. ...+.+..+++...........++.......+..++.|+||++
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-----~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-----FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEec-----CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 2222 2344567777776 33333332 1345566666655432111122333333346788999999999
Q ss_pred EEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
++..+. +..+-+++..+-+. +..+. .|...++.+.|+||.++++-.+.+ ....|....++.
T Consensus 296 ~AlGT~---dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~-----~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 296 LALGTM---DGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSD-----NEAAVTKLAVDK 357 (398)
T ss_pred EEEecc---CCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccC-----CceeEEEEeecc
Confidence 999988 67788888775442 22222 345578999999999999886665 334555555433
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.72 E-value=3.9e-07 Score=92.79 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=120.2
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
....|+|||.-|..++ ++.|.+|.-.|--...+. ...+...+|.|+...++|+. .+.+.|-.+..+.
T Consensus 108 ~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--------g~h~~IKpL~~n~-- 177 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--------GGHISIKPLAANS-- 177 (737)
T ss_pred hhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec--------CCeEEEeeccccc--
Confidence 3458999999888885 788999986553222222 45788999999999999985 3555555555543
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
++.+...+++.+..+.|+|.+..|+...+ +.+..+||..+.. +-.-..+.+.+++++|.|| +.+++.+..
T Consensus 178 ---k~i~WkAHDGiiL~~~W~~~s~lI~sgGE---D~kfKvWD~~G~~---Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 178 ---KIIRWRAHDGLVLSLSWSTQSNIIASGGE---DFRFKIWDAQGAN---LFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ---ceeEEeccCcEEEEeecCccccceeecCC---ceeEEeecccCcc---cccCChhccceeeeeeccc-cceeeeeee
Confidence 67778888889999999999998887776 7889999988544 4444456778899999999 444444433
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
.+. +..+ ..+.+..++||+||..++.....
T Consensus 248 --------t~R-----------~~~p-~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 248 --------TAR-----------FSSP-RVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred --------eee-----------ecCC-CccceEEEEEcCCCceeeccccC
Confidence 222 2111 34567788999999988765543
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.72 E-value=6.8e-07 Score=91.25 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=100.4
Q ss_pred CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEE--cCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVW--DPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
...+.|-|.+..+..+ ..+.+|++|.. + ......+.| -+++..+.+... .-....
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~------~-~~~~t~p~~~~~k~~~~f~i~t~--------------ksk~~r 280 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKE------I-VCGATAPSYQALKDGDQFAILTS--------------KSKKTR 280 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeecc------c-cccCCCCcccccCCCCeeEEeee--------------eccccC
Confidence 3456777655544433 57888988762 1 122222222 345555544321 111111
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEE
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~ 575 (721)
..+.++....+.+..++|||||++||.++. +.-|.++|.++.+ +.-+... -+...-+.||||||+|+.+
T Consensus 281 ----NPv~~w~~~~g~in~f~FS~DG~~LA~VSq---DGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 281 ----NPVARWHIGEGSINEFAFSPDGKYLATVSQ---DGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred ----CccceeEeccccccceeEcCCCceEEEEec---CceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEec
Confidence 134445555557788999999999999998 7889999988766 3333321 2234678999999999999
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
..++ -|-+|.+..+++..--. +|..++..++|.|
T Consensus 351 GEDD-------LVtVwSf~erRVVARGq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 351 GEDD-------LVTVWSFEERRVVARGQ-GHKSWVSVVAFDP 384 (636)
T ss_pred CCcc-------eEEEEEeccceEEEecc-ccccceeeEeecc
Confidence 9885 67888887765544433 3777888899986
No 190
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.1e-06 Score=90.81 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=120.6
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVN 445 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d 445 (721)
+...+..+.|..+|.+|+.+...+.. ..+++.++.-.. ..+...........|+|---+++++....|.+||
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~------~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGN------KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYD 593 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCc------ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEe
Confidence 35567789999999999987766553 356777664332 2222233344567899988889888999999999
Q ss_pred CCCCce-EEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE----
Q 004971 446 SDGSNR-RQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV---- 518 (721)
Q Consensus 446 ~~~g~~-~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 518 (721)
+..++. +.+ + ...+..++.+|.|..|+..+ .++++-.+++++.+. ..+.+..+...+..++|
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs-------~d~k~~WfDldlssk----Pyk~lr~H~~avr~Va~H~ry 662 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-------YDKKMCWFDLDLSSK----PYKTLRLHEKAVRSVAFHKRY 662 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-------CCCeeEEEEcccCcc----hhHHhhhhhhhhhhhhhcccc
Confidence 987653 222 2 34678899999999999986 467777788888764 44555555444444444
Q ss_pred ------ccCCCEEEEEEeeCCceeEEEEEC-CCCcccceEECcCCC----cCceeeEEccCCCEEEEEEccC
Q 004971 519 ------SPDGKWIVFRSTRTGYKNLYIMDA-EGGEGYGLHRLTEGP----WSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 519 ------SpDg~~l~~~s~~~g~~~l~~~d~-~~g~~~~~~~l~~~~----~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
|+||..++|-.. +|- |+ ++.....++.|..+. ..+-...|.|..-||+.+..++
T Consensus 663 PLfas~sdDgtv~Vfhg~------VY~-Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGM------VYN-DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred ceeeeecCCCcEEEEeee------eeh-hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence 455555554432 111 11 111222244454442 2356678999999998887764
No 191
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.71 E-value=8.8e-07 Score=86.71 Aligned_cols=217 Identities=18% Similarity=0.104 Sum_probs=151.2
Q ss_pred CCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEc-CCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 430 GDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWD-PVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 430 G~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~s-pdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
+++|.... ++.+.+||..|....++. .+.+...+|- ++.. .++.++ .+..+.+|.++.... ..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-------~Dqtl~Lw~~~~~~~----~~ 183 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-------MDQTLRLWKWNVGEN----KV 183 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec-------CCceEEEEEecCchh----hh
Confidence 55666664 788999999988777776 4556656653 3332 244443 578899999987653 22
Q ss_pred EEc---ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc-----------------------ccceEECcCCC
Q 004971 504 RRL---TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-----------------------GYGLHRLTEGP 557 (721)
Q Consensus 504 ~~l---~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~-----------------------~~~~~~l~~~~ 557 (721)
..+ ..|...+..++..+||.+++..+. +..|-+|+....+ ..++..+..+.
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~---D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSW---DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeecc---cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 221 245567778899999999999988 7788888832111 01233444556
Q ss_pred cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637 (721)
Q Consensus 558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 637 (721)
..+..+.|++ ...++..+.++ .|..||+.+++...-.. .......+..+|.-+.|+..+.+.
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDH-------TIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr-------- 322 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDH-------TIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDR-------- 322 (423)
T ss_pred cceeeEEEcC-CCceEeecccc-------eEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCC--------
Confidence 6678899997 55677777776 89999998886543322 455678899999988888776654
Q ss_pred CCCCCCCCccEEEEEcCCCC----eEEeccCCCCCCCceecCC---cCCccccc-ccc
Q 004971 638 TPHQYQPYGEIFKIKLDGSD----LKRLTQNSFEDGTPAWGPR---FIRPVDVE-EVK 687 (721)
Q Consensus 638 ~~~~~~~~~~l~~~d~~~~~----~~~lt~~~~~~~~~~~sp~---~l~~~~~~-~~~ 687 (721)
+|.+||+.++. ..++..|.+.+.+..|+|. ++..++.| .++
T Consensus 323 ---------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 323 ---------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ---------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 48889986652 3578888999999999994 66667666 444
No 192
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.70 E-value=3.9e-06 Score=79.90 Aligned_cols=267 Identities=10% Similarity=0.049 Sum_probs=160.1
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|||....++. ...-++.+++|.+...+.. ..+....+...+..++|+. ||..++... .+.++.
T Consensus 32 ~l~FSP~~~~~~~-A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~Wsd-dgskVf~g~-----~Dk~~k 97 (347)
T KOG0647|consen 32 ALAFSPQADNLLA-AGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSD-DGSKVFSGG-----CDKQAK 97 (347)
T ss_pred eeEeccccCceEE-ecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEcc-CCceEEeec-----cCCceE
Confidence 4589984333332 2334899999977665322 2333334455677899999 998776643 455699
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp 428 (721)
+||+++++..++. .|...+..+.|-+... -|+..+.+.. |..+|.+... .+.......+ .+.-
T Consensus 98 ~wDL~S~Q~~~v~---~Hd~pvkt~~wv~~~~~~cl~TGSWDKT---------lKfWD~R~~~-pv~t~~LPeR--vYa~ 162 (347)
T KOG0647|consen 98 LWDLASGQVSQVA---AHDAPVKTCHWVPGMNYQCLVTGSWDKT---------LKFWDTRSSN-PVATLQLPER--VYAA 162 (347)
T ss_pred EEEccCCCeeeee---ecccceeEEEEecCCCcceeEecccccc---------eeecccCCCC-eeeeeeccce--eeeh
Confidence 9999999866664 3466677777776655 5566666665 3344444331 1111111111 1112
Q ss_pred CC--CEEEEE-eCCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 429 KG--DRIAFV-EFPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 429 DG--~~la~~-~~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
|= ..+++. .+..|.+++|..+.. +.+. .-.++.++.-+|.+..++.+ -.+.+.|..++.......
T Consensus 163 Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-------iEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 163 DVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-------IEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred hccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-------ecceEEEEecCCCCccCc
Confidence 21 123333 578899999976542 2332 34566777777777777765 346777777765311000
Q ss_pred cce--EEc---ccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 501 SAV--RRL---TTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 501 ~~~--~~l---~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
... .+- ... -+.+..++|.|.-..|+.+.. +..+..||-+.... ++........+.-..|+-+|+.++|
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs---DGtf~FWDkdar~k--Lk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS---DGTFSFWDKDARTK--LKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecC---CceEEEecchhhhh--hhccCcCCCccceeEecCCCCEEEE
Confidence 000 110 111 145567899998888888876 78888999875432 4444445566778899999999998
Q ss_pred EEcc
Q 004971 575 ASDR 578 (721)
Q Consensus 575 ~~~~ 578 (721)
+...
T Consensus 311 A~gY 314 (347)
T KOG0647|consen 311 ALGY 314 (347)
T ss_pred Eeec
Confidence 8753
No 193
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.1e-06 Score=80.94 Aligned_cols=238 Identities=15% Similarity=0.090 Sum_probs=152.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccCcEEcC--CCCEEEEEEeeCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLNPFISP--DSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~~~~ 397 (721)
.++++...= -|++|+..+ .+..|.++....+.. ..+..+.+|.+.+..++|.. -|..|+.++.++.
T Consensus 13 ~IHda~lDy-ygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk----- 81 (299)
T KOG1332|consen 13 MIHDAQLDY-YGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK----- 81 (299)
T ss_pred hhhHhhhhh-hcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-----
Confidence 344444444 789998854 345589998876553 66777788888888888876 6888888877776
Q ss_pred CcceeEEEeccCC----CCcceecccCCCCceeCcCCCE--EEEE-eCCcEEEEECCCC-c--eEEEe---ecCceeeEE
Q 004971 398 GNNQLLLENIKSP----LPDISLFRFDGSFPSFSPKGDR--IAFV-EFPGVYVVNSDGS-N--RRQVY---FKNAFSTVW 464 (721)
Q Consensus 398 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~SpDG~~--la~~-~~~~l~v~d~~~g-~--~~~l~---~~~~~~~~~ 464 (721)
+.++.-.++ .............++|.|.+-- |+.. +++.|.+++.++. . ...|. ...+..+.|
T Consensus 82 ----VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 82 ----VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred ----EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 344433333 1112223344566788777543 4444 5788888777543 1 22222 456788899
Q ss_pred cCC---C-----------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC----CEEE
Q 004971 465 DPV---R-----------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG----KWIV 526 (721)
Q Consensus 465 spd---g-----------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg----~~l~ 526 (721)
.|- | ++|+... .+..+.||..+.+.- ...+.|..+...+..++|.|.- .+|+
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgG-------cDn~VkiW~~~~~~w---~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGG-------CDNLVKIWKFDSDSW---KLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cCcCCCccccccCcccccceeeccC-------CccceeeeecCCcch---hhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 886 4 3344332 478899999987642 2334577888888899999964 3455
Q ss_pred EEEeeCCceeEEEEECCC-CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 527 FRSTRTGYKNLYIMDAEG-GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
..+. +.++.+|..+. .+.-+.+.+...+..+..++||+.|..|+++..+. .+.+|.-
T Consensus 228 S~Sq---Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-------kvtlwke 285 (299)
T KOG1332|consen 228 SCSQ---DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-------KVTLWKE 285 (299)
T ss_pred EecC---CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-------EEEEEEe
Confidence 5554 56677765542 12222333444445568899999999999988774 6666654
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.68 E-value=2.4e-07 Score=95.97 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=126.9
Q ss_pred CCceeCc-CCCEEEEE-eCCcEEEEECCCCce--------EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971 422 SFPSFSP-KGDRIAFV-EFPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 422 ~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i 489 (721)
..+.|.| |.++||+. .++.|.+|.+..+.. ..|+ ...+..+.|.|=-.-++.++ ..+..++|
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a------syd~Ti~l 704 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA------SYDSTIEL 704 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh------hccceeee
Confidence 3468876 56788887 477888888754321 2233 45677888888544333332 25688999
Q ss_pred EEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc----CceeeEE
Q 004971 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW----SDTMCNW 565 (721)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~----~~~~~~~ 565 (721)
|++.... ...++..+...+..++|||||++++.... +..|+++...+++. .+.++.+ .-..+.|
T Consensus 705 WDl~~~~-----~~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e~----pv~Eg~gpvgtRgARi~w 772 (1012)
T KOG1445|consen 705 WDLANAK-----LYSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSREQ----PVYEGKGPVGTRGARILW 772 (1012)
T ss_pred eehhhhh-----hhheeccCcCceeEEEECCCCcceeeeec---CceEEEeCCCCCCC----ccccCCCCccCcceeEEE
Confidence 9987654 45677788888999999999999999997 88999999987763 3443322 2356889
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.-||+.|++...+. ...++|.+||..+-..+.+.... .....--+.+.+|...|+.+...+
T Consensus 773 acdgr~viv~Gfdk---~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDK---SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred EecCcEEEEecccc---cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence 99999999888765 46678888987654322222110 122334567888887766655433
No 195
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.68 E-value=5.2e-06 Score=90.29 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=164.9
Q ss_pred CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCC
Q 004971 344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF 423 (721)
Q Consensus 344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 423 (721)
..+..|.+||..++... ...+.+|.+.+..+++..-+..|+..+.+.. +.+++...+.-.-.........
T Consensus 225 s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t---------~rvWd~~sg~C~~~l~gh~stv 294 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT---------ERVWDCSTGECTHSLQGHTSSV 294 (537)
T ss_pred CCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCc---------EEeEecCCCcEEEEecCCCceE
Confidence 35566899999988742 2336788888888888875666766665555 4444554442211111111111
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
..++-.+..++.. .+..|.+|++.++....+. .+.+..+... +..++.++ .++.+.+|++....
T Consensus 295 ~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs-------~d~~v~VW~~~~~~--- 362 (537)
T KOG0274|consen 295 RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS-------YDGTVKVWDPRTGK--- 362 (537)
T ss_pred EEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe-------cCceEEEEEhhhce---
Confidence 1233333233332 4788999999988876665 3455566665 77777776 46799999998543
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC-cccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG-EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g-~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
.++.+..+...+..+.+.+. ..++-.+. +..|.+||+.++ +. +..+..+...+..+ ...++.|+....+
T Consensus 363 --cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~---D~~IkvWdl~~~~~c--~~tl~~h~~~v~~l--~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 363 --CLKSLSGHTGRVYSLIVDSE-NRLLSGSL---DTTIKVWDLRTKRKC--IHTLQGHTSLVSSL--LLRDNFLVSSSAD 432 (537)
T ss_pred --eeeeecCCcceEEEEEecCc-ceEEeeee---ccceEeecCCchhhh--hhhhcCCccccccc--ccccceeEecccc
Confidence 77888888877777766554 66776666 678999999988 43 55555555444333 3457788888877
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
+ .|.+||...++..+.....+.+.+..+++. +..++.+.+.+ .+.+||+..++.
T Consensus 433 ~-------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~----------------~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 433 G-------TIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDG----------------SVKLWDLRSGTL 486 (537)
T ss_pred c-------cEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCC----------------eeEEEecccCch
Confidence 4 899999999988877653222333444443 34444554443 388889988865
Q ss_pred E
Q 004971 659 K 659 (721)
Q Consensus 659 ~ 659 (721)
.
T Consensus 487 ~ 487 (537)
T KOG0274|consen 487 I 487 (537)
T ss_pred h
Confidence 4
No 196
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=3.3e-05 Score=76.98 Aligned_cols=253 Identities=11% Similarity=0.031 Sum_probs=142.9
Q ss_pred cCceeecCCCCEEEEEEe-----cCCCCeeeEEEEECCCCceE---Eeecc-c-CCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 323 FTPATSPGNNKFIAVATR-----RPTSSYRHIELFDLVKNKFI---ELTRF-V-SPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~-----~~g~~~~~l~l~dl~tg~~~---~l~~~-~-~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
.++.+|| ||+.++.+.. ..|.-..-|.+||.++-..+ .|... . .........++|.||+++++......
T Consensus 39 ~~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 39 GNVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 4577899 9999886542 12333445889999986532 22211 0 01123456799999999999887776
Q ss_pred CCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEeCCcEEEEECC-CCceEEE----e---ec-Ccee
Q 004971 393 STREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQV----Y---FK-NAFS 461 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l----~---~~-~~~~ 461 (721)
..+-+.|+....- .+....|..-+| +++......+.++.+..+.++ .|+..+- + .. ....
T Consensus 118 -------~SVtVVDl~~~kvv~ei~~PGC~~iyP--~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 118 -------TSVTVVDLAAKKVVGEIDTPGCWLIYP--SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp -------EEEEEEETTTTEEEEEEEGTSEEEEEE--EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred -------CeEEEEECCCCceeeeecCCCEEEEEe--cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence 6678888766521 111111111111 222234444567888887776 4554321 1 11 2236
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------CC---CCCcceEEccCCCEEEEEEee
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------NG---KNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~~---~~~~~~~~SpDg~~l~~~s~~ 531 (721)
++++.++.+++|.+. +-.||.+++.+.. ......+.. .. +.....++++..++|++.-..
T Consensus 189 ~~~~~~~~~~~F~Sy---------~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSY---------EGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp -EEETTTTEEEEEBT---------TSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred cceECCCCeEEEEec---------CCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 677778888888762 3456666665531 011111211 11 223347888888888876543
Q ss_pred C-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 532 T-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 532 ~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
. +...||.+|+.+++. +.++... ..+.+++.|.|.+-++|+.... ...|+++|..+|+......
T Consensus 259 g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~-----~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKR--VARIPLE-HPIDSIAVSQDDKPLLYALSAG-----DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEE--EEEEEEE-EEESEEEEESSSS-EEEEEETT-----TTEEEEEETTT--EEEEE-
T ss_pred CCCCCccCCceEEEEEECCCCeE--EEEEeCC-CccceEEEccCCCcEEEEEcCC-----CCeEEEEeCcCCcEEeehh
Confidence 2 345899999999886 6666632 2245889999999777765432 2389999999998766543
No 197
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=5.4e-07 Score=93.97 Aligned_cols=237 Identities=8% Similarity=0.044 Sum_probs=153.0
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCce---EE-eecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKF---IE-LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~---~~-l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 406 (721)
.+++|+. ++.++.|++|+...... .. +...+.|...+..++...+|+.|+.++.+.. ..+|-..
T Consensus 36 ~~ryLfT-----gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT-------VK~W~~~ 103 (735)
T KOG0308|consen 36 NGRYLFT-----GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT-------VKVWNAH 103 (735)
T ss_pred CCceEEe-----cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce-------EEEeecc
Confidence 5555544 34566799998764332 11 3344556667777888888998888877776 3333322
Q ss_pred ccC--CCCcceecccCCCCcee-CcCCCEEEEEe-CCcEEEEECCCCceEEE------e--------ecCceeeEEcCCC
Q 004971 407 IKS--PLPDISLFRFDGSFPSF-SPKGDRIAFVE-FPGVYVVNSDGSNRRQV------Y--------FKNAFSTVWDPVR 468 (721)
Q Consensus 407 ~~~--~~~~~~~~~~~~~~~~~-SpDG~~la~~~-~~~l~v~d~~~g~~~~l------~--------~~~~~~~~~spdg 468 (721)
... -...+....--+..+++ .++...+|..+ +..|++||+.++..+.+ + ...+.+++-.+.|
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 111 01111111111223444 45555555554 88999999998744221 1 1245566777777
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~ 548 (721)
..++-.. ..+.+++|+..... +..+|..|..++..+..++||++++.++. +..|.+||+...+.
T Consensus 184 t~ivsGg-------tek~lr~wDprt~~-----kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrC- 247 (735)
T KOG0308|consen 184 TIIVSGG-------TEKDLRLWDPRTCK-----KIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRC- 247 (735)
T ss_pred eEEEecC-------cccceEEecccccc-----ceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccce-
Confidence 4443332 46788999887754 66777788888899999999999999987 88999999975544
Q ss_pred ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeee
Q 004971 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQ 603 (721)
Q Consensus 549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~ 603 (721)
+..+.-+...++.+.-+|+=++++++..++ .||+-|+.+. +.+.+..
T Consensus 248 -l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~-------~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 248 -LATYIVHKEGVWALQSSPSFTHVYSGGRDG-------NIYRTDLRNPAKSTLICK 295 (735)
T ss_pred -eeeEEeccCceEEEeeCCCcceEEecCCCC-------cEEecccCCchhheEeec
Confidence 555555555578888889888888888775 8999999884 4444443
No 198
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.66 E-value=1.7e-07 Score=90.27 Aligned_cols=251 Identities=13% Similarity=0.044 Sum_probs=155.2
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccC
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFD 420 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ 420 (721)
|..+..|.+||..+-. -+..+.+|.+.+.+..+. .+.|+..+.+. .+.+++..++ .+.+......
T Consensus 213 GlrDnTikiWD~n~~~--c~~~L~GHtGSVLCLqyd--~rviisGSSDs---------TvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLE--CLKILTGHTGSVLCLQYD--ERVIVSGSSDS---------TVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred ccccCceEEeccccHH--HHHhhhcCCCcEEeeecc--ceEEEecCCCc---------eEEEEeccCCchhhHHhhhcce
Confidence 4456679999987765 333446677777666665 44444433333 3555555544 3333323233
Q ss_pred CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
+-.+.|+. | +++.. .+..+.+||+.......+. -..+..+.| |.++++.++ .+..+++|.++
T Consensus 280 VLhlrf~n-g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsAS-------gDRTikvW~~s 348 (499)
T KOG0281|consen 280 VLHLRFSN-G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-------GDRTIKVWSTS 348 (499)
T ss_pred eEEEEEeC-C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEec-------CCceEEEEecc
Confidence 33455653 3 55555 4778999999865522211 123444555 566777665 67899999987
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEE
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~ 573 (721)
.-. .++.+..+...+.- .--.|+.++..+. +..|.+||+..|.. ++.|..++.-+..+.| |.+.|+
T Consensus 349 t~e-----fvRtl~gHkRGIAC--lQYr~rlvVSGSS---DntIRlwdi~~G~c--LRvLeGHEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 349 TCE-----FVRTLNGHKRGIAC--LQYRDRLVVSGSS---DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIV 414 (499)
T ss_pred cee-----eehhhhccccccee--hhccCeEEEecCC---CceEEEEeccccHH--HHHHhchHHhhhheee--cCceee
Confidence 643 55666666533332 3335777766665 78999999999986 6666666655666777 467899
Q ss_pred EEEccCCCCCCceeEEEEecCCCceE-Ee-------eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTGLR-KL-------IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
.+..++ .|.+||+..+.-- .. +...+.+.+..+.| |...|+..+.+++
T Consensus 415 SGaYDG-------kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt--------------- 470 (499)
T KOG0281|consen 415 SGAYDG-------KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT--------------- 470 (499)
T ss_pred eccccc-------eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCe---------------
Confidence 888886 8999999776422 11 11125567777777 4556766666653
Q ss_pred ccEEEEEcCCCC
Q 004971 646 GEIFKIKLDGSD 657 (721)
Q Consensus 646 ~~l~~~d~~~~~ 657 (721)
|-+||...+.
T Consensus 471 --ILiWdFl~~~ 480 (499)
T KOG0281|consen 471 --ILIWDFLNGP 480 (499)
T ss_pred --EEEEEcCCCC
Confidence 8889876653
No 199
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.1e-06 Score=89.21 Aligned_cols=231 Identities=10% Similarity=0.080 Sum_probs=170.1
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSD 447 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~ 447 (721)
...+.++.+.|...+++..-..+. ..||-++...-.+.+.......+...|-+--++++.. .+..|.+++..
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~-------V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGD-------VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCe-------eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 344556778888888877766666 4555554443344444444445666776666788777 47899999999
Q ss_pred CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-CCC
Q 004971 448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGK 523 (721)
Q Consensus 448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~ 523 (721)
+++....+ ...++.++..|.--+++..+ ++-.+++|+.+..= ...+.+..|...+..++|.| |..
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~we~~w----a~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWDWENEW----ACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEeeccCce----eeeeEEcCcceEEEEEEecCCCcc
Confidence 98865554 67889999999999998876 57889999987643 26667777887888899998 677
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC--CEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG--EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
.++..+- +..+.+|.+.+..+ ...+..+...++.+.+-+-| -+|+.++++. .|.+||-.++.+.+.
T Consensus 155 tFaS~sL---DrTVKVWslgs~~~--nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~-------tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 155 TFASASL---DRTVKVWSLGSPHP--NFTLEGHEKGVNCVDYYTGGDKPYLISGADDL-------TIKVWDYQTKSCVQT 222 (794)
T ss_pred ceeeeec---cccEEEEEcCCCCC--ceeeeccccCcceEEeccCCCcceEEecCCCc-------eEEEeecchHHHHHH
Confidence 8888887 78999999976554 66777777777888887655 4676666664 899999999877665
Q ss_pred eecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 602 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.. +|...+..+.|.|.=..|+..+.+++
T Consensus 223 Le-GHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 223 LE-GHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred hh-cccccceEEEecCCCcEEEEecCCcc
Confidence 43 47778888999998777777666665
No 200
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1.9e-06 Score=86.70 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=142.4
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+..++-+| +|.+|+-.. ..+.||+|.+.+|+ .|..+..|...+..+.||-||..|+..+.++. .
T Consensus 83 ~v~al~s~n-~G~~l~ag~-----i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-------V 147 (476)
T KOG0646|consen 83 PVHALASSN-LGYFLLAGT-----ISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-------V 147 (476)
T ss_pred ceeeeecCC-CceEEEeec-----ccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcEEEecCCCcc-------E
Confidence 456778889 998776531 33459999999998 45555667788889999999999998777776 3
Q ss_pred eeEEE-eccCC-----CCcceec---ccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCce-EEE-eecCceeeEEcC
Q 004971 401 QLLLE-NIKSP-----LPDISLF---RFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNR-RQV-YFKNAFSTVWDP 466 (721)
Q Consensus 401 ~l~~~-~~~~~-----~~~~~~~---~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~-~~l-~~~~~~~~~~sp 466 (721)
.+|.. ++-.. ...+..+ ......+...+. ..+|+.++ +..+.+||+..|.. ..+ ++..+..++.+|
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp 227 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP 227 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc
Confidence 34432 11111 1111111 111122233322 23455554 78899999999874 223 377888999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCC-----------CCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCC
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDV-----------DGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g 533 (721)
-++.+++.+ .++.+.+..+..-.+ ....+...+..+.+ .+..++++-||..|+..+.
T Consensus 228 ae~~~yiGt-------~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~--- 297 (476)
T KOG0646|consen 228 AERVVYIGT-------EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE--- 297 (476)
T ss_pred cccEEEecC-------CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC---
Confidence 999998876 345555444432110 01123334444444 6778999999999988877
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp 567 (721)
+..+.+||+.+.+. ++.+....+.++.+.+.|
T Consensus 298 dg~VcvWdi~S~Q~--iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQC--IRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCCEEEEecchHHH--HHHHhhhccccceeEeec
Confidence 78999999998775 666765556667777744
No 201
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1e-05 Score=81.67 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=130.5
Q ss_pred CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
+..+.|.++...|+++ ..+.|+.|+..+++.+.+. +........-.++..|+.+. ..+.+++.+..+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~- 96 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGG- 96 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc---------cccEEEeccCCc-
Confidence 4568999999999988 4889999999888766665 44455544444444555443 223333332111
Q ss_pred CCccceEEcccCC-----CCCcceEEccCCCEEEEEEee------C---CceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 498 DGVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTR------T---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 498 ~~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~------~---g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
..+.+.... .........|||+ ++|.... . ....||++|..++. .+.+..+-...+.+
T Consensus 97 ----~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~~~~~~NGl 168 (307)
T COG3386 97 ----KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDDDLTIPNGL 168 (307)
T ss_pred ----eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecCcEEecCce
Confidence 112222211 2345578899988 4444333 1 23379999986444 44444434455789
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCC--C---ceE-EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--T---GLR-KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS 637 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~---~~~-~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 637 (721)
+|||||+.|+++.... ..|++++.+. + ..+ .+......+.....+...||.+.+ .....+.
T Consensus 169 a~SpDg~tly~aDT~~------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~------ 235 (307)
T COG3386 169 AFSPDGKTLYVADTPA------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGG------ 235 (307)
T ss_pred EECCCCCEEEEEeCCC------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCc------
Confidence 9999999999988753 3788887752 1 111 121111345666778888888554 3333332
Q ss_pred CCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceec
Q 004971 638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG 674 (721)
Q Consensus 638 ~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s 674 (721)
.|.+++.++.....+.-......+|+|.
T Consensus 236 ---------~v~~~~pdG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 236 ---------RVVRFNPDGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred ---------eEEEECCCCcEEEEEECCCCCCccceEe
Confidence 3899999966666665544667888885
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=3.4e-05 Score=75.77 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=102.0
Q ss_pred eeCcCCCEEEEEeCCcEEEEECCCCceE-EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 425 SFSPKGDRIAFVEFPGVYVVNSDGSNRR-QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 425 ~~SpDG~~la~~~~~~l~v~d~~~g~~~-~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
++--+-++|+++-...||++|+..-+.. .|. ....-.+..++.+.+|+|-.. ...+.+.||+...-.
T Consensus 92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~-- 164 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-----TTSGDVVLFDTINLQ-- 164 (391)
T ss_pred EEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-----CCCceEEEEEcccce--
Confidence 3434566788876777999999876532 222 112334555556679988643 246777787765432
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCCEEEEEE
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~~l~~~~ 576 (721)
....+..|.+....++|+|||..||.++++ ..-|+++.+.+|+. +.++-.+. ..+.+++||||++.|..++
T Consensus 165 ---~v~~I~aH~~~lAalafs~~G~llATASeK--GTVIRVf~v~~G~k--l~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 165 ---PVNTINAHKGPLAALAFSPDGTLLATASEK--GTVIRVFSVPEGQK--LYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ---eeeEEEecCCceeEEEECCCCCEEEEeccC--ceEEEEEEcCCccE--eeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 455677788888999999999999999984 34577888888875 55554443 3467899999999988888
Q ss_pred ccCCCCCCceeEEEEe
Q 004971 577 DRDNPGSGSFEMYLIH 592 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d 592 (721)
+.+ ..+||..+
T Consensus 238 ~Te-----TVHiFKL~ 248 (391)
T KOG2110|consen 238 NTE-----TVHIFKLE 248 (391)
T ss_pred CCC-----eEEEEEec
Confidence 763 34455444
No 203
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=5.6e-07 Score=95.70 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=144.3
Q ss_pred ceeCc-CCCEEEEE-eCCcEEEEECCCC-ceEEE--e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 424 PSFSP-KGDRIAFV-EFPGVYVVNSDGS-NRRQV--Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 424 ~~~Sp-DG~~la~~-~~~~l~v~d~~~g-~~~~l--~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
+.|+. +.+.||.+ ..+.|.+||+.-. ..+.+ + ...+..+.|++--..+++.. ..++.+++|++..+
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG------SQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG------SQDGTVKCWDLRSK 166 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec------CCCceEEEEeeecc
Confidence 45542 34456666 4788999999652 22222 2 45677899999888888776 46899999999887
Q ss_pred CCCCccceEEcccCCCCCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
.. . .........+..+.|+|- +.+++...+ .+.|.+||+..-. +...+++.+.+.+.-+.|+|++.+||.
T Consensus 167 ~S----~-~t~~~nSESiRDV~fsp~~~~~F~s~~d---sG~lqlWDlRqp~-r~~~k~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 167 KS----K-STFRSNSESIRDVKFSPGYGNKFASIHD---SGYLQLWDLRQPD-RCEKKLTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred cc----c-ccccccchhhhceeeccCCCceEEEecC---CceEEEeeccCch-hHHHHhhcccCceEEEeecCCCceeee
Confidence 63 2 122223357788999985 444444444 5679999997543 235678888888899999999999999
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
++.+. .|.+||+.+++...+........+..+.|-|+-.+.+.+..-... ..|++||+.
T Consensus 238 GGRDK-------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d--------------tsV~VWDvr 296 (839)
T KOG0269|consen 238 GGRDK-------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD--------------TSVHVWDVR 296 (839)
T ss_pred cCCCc-------cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc--------------ceEEEEeec
Confidence 98765 899999987765543322245567889999998775433332211 249999987
Q ss_pred CCC--eEEeccCCCCCCCceec
Q 004971 655 GSD--LKRLTQNSFEDGTPAWG 674 (721)
Q Consensus 655 ~~~--~~~lt~~~~~~~~~~~s 674 (721)
-.= -..+..|.......+|.
T Consensus 297 RPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 297 RPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred cccccceeeeccCccccceecc
Confidence 652 23444455556666774
No 204
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=2.5e-05 Score=92.67 Aligned_cols=238 Identities=11% Similarity=0.045 Sum_probs=136.3
Q ss_pred cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----------CCCcccCcEEcCCCCEEEEEEeeC
Q 004971 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----------PKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----------~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
..+++++ ++..|+++... ..+|+++|..+.....+..... .-....++++++++..|+++...+
T Consensus 571 ~gvavd~-~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDL-LNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEEC-CCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 3567887 76667765432 3459999987543333321000 011245678999988877754332
Q ss_pred CCCCCCCcceeEEEeccCCCC-cce-----------------ecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce
Q 004971 392 GSTREDGNNQLLLENIKSPLP-DIS-----------------LFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR 451 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~-~~~-----------------~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~ 451 (721)
. .+...++.++.. .+. ..-.....++++|++..|+++ ....|++++..++..
T Consensus 646 ~--------~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 646 H--------ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred c--------eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 2 233333322210 000 000112346889966667666 467899999987765
Q ss_pred EEEe-e----------------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-------
Q 004971 452 RQVY-F----------------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT------- 507 (721)
Q Consensus 452 ~~l~-~----------------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~------- 507 (721)
..+. . .....++++|||++|+++.. .++.+++|+++..+ ...+.
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~D~~tg~------~~~~~gg~~~~~ 785 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRALDLKTGG------SRLLAGGDPTFS 785 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEEECCCCc------EEEEEecccccC
Confidence 4332 1 12346899999999988752 34566666554321 11110
Q ss_pred -------cC--------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-C-------------Cc
Q 004971 508 -------TN--------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-G-------------PW 558 (721)
Q Consensus 508 -------~~--------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~-------------~~ 558 (721)
.. -.....+++++||+ |+++.. ++..|.+||.+++. +..+.. + -.
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccC
Confidence 00 01235678999997 444432 26789999998877 333321 1 01
Q ss_pred CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 559 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
....+++++||+ |+++.... ..|.+||+.+++.
T Consensus 860 ~P~GIavd~dG~-lyVaDt~N------n~Irvid~~~~~~ 892 (1057)
T PLN02919 860 EPAGLALGENGR-LFVADTNN------SLIRYLDLNKGEA 892 (1057)
T ss_pred CceEEEEeCCCC-EEEEECCC------CEEEEEECCCCcc
Confidence 245689999997 55554332 3899999998865
No 205
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.59 E-value=1e-05 Score=81.34 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=174.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGSTRED 397 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~ 397 (721)
.+..++|.|+-.+.++.+. ...++|-+||+.+.+. ..+..+..+...+.++.|+|... .|+..+.++.
T Consensus 188 Rit~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt----- 258 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT----- 258 (498)
T ss_pred ceEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-----
Confidence 4567889994443555543 3345599999963321 12233344566788899999764 5555555555
Q ss_pred CcceeEEEeccCCCCccee-c---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc--e--EEEeecCceeeEEcCCC
Q 004971 398 GNNQLLLENIKSPLPDISL-F---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--R--RQVYFKNAFSTVWDPVR 468 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~-~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~--~~l~~~~~~~~~~spdg 468 (721)
+...++......... . ...-....++.+...+++.. -+.+.++|+..+. . ..+....+..+++.|-.
T Consensus 259 ----iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 259 ----IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred ----eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 455565544221111 1 01112346666666777763 4467788876443 2 23335688999999998
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC----C
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE----G 544 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~----~ 544 (721)
.+++.++ ..+....||++..-..... ..-....+...+....|||+|-.|+..+. +..|.+||.. .
T Consensus 335 p~~laT~------s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 335 PWFLATA------SLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAK 404 (498)
T ss_pred chheeec------ccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeecc---CCceEEeeccccccc
Confidence 8887776 3678899999864332000 01222334467788899999999998887 7899999983 2
Q ss_pred CcccceEECcCCC----c-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE-eeecCCCCCcCCeEECCC
Q 004971 545 GEGYGLHRLTEGP----W-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 545 g~~~~~~~l~~~~----~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~SpD 618 (721)
-++ ...|.... + ......|.||-..|+++.... .|-++|..+++... +-.+....-.....|.|-
T Consensus 405 ~~p--~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r-------~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 405 DEP--LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR-------PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred CCc--cceeeccCcccccccchhheeCCCccEEEEeccCc-------ceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence 221 22232211 1 123568999988888877653 68888988876332 221101122234679998
Q ss_pred CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+..++..++..+ .||+|.-++
T Consensus 476 ~~~~~aG~~s~G----------------ki~vft~k~ 496 (498)
T KOG4328|consen 476 RDTLAAGGNSSG----------------KIYVFTNKK 496 (498)
T ss_pred ccceeccCCccc----------------eEEEEecCC
Confidence 887776666654 488886544
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.59 E-value=1.7e-06 Score=88.43 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=121.5
Q ss_pred CcCCCEEEE-EeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 427 SPKGDRIAF-VEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 427 SpDG~~la~-~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
.|+|--+.+ ...+++.++|....+...+. ...++.+.|-|.+..++.++. ..++..+|.......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~------~sGnlyly~~~~~~~- 254 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH------ASGNLYLYDKEIVCG- 254 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE------ecCceEEeecccccc-
Confidence 345533333 35677888776544332222 456788999998887777662 345666665422110
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
. .......-+++..+....... .. +..+ +.+.......+...+|||||++||..+.+
T Consensus 255 -----------~-t~p~~~~~k~~~~f~i~t~ks------k~---~rNP--v~~w~~~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 255 -----------A-TAPSYQALKDGDQFAILTSKS------KK---TRNP--VARWHIGEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred -----------C-CCCcccccCCCCeeEEeeeec------cc---cCCc--cceeEeccccccceeEcCCCceEEEEecC
Confidence 0 111122335666665544311 11 1111 33344444567889999999999999988
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
+ .|.++|.++.++.-+... --+..-.+.||||||+|+....++- |-+|...-+++
T Consensus 312 G-------fLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDL-----------------VtVwSf~erRV 366 (636)
T KOG2394|consen 312 G-------FLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDL-----------------VTVWSFEERRV 366 (636)
T ss_pred c-------eEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecCCcce-----------------EEEEEeccceE
Confidence 6 788888888766555432 3355678999999999998777663 66666655544
Q ss_pred -EEeccCCCCCCCceecCCc
Q 004971 659 -KRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 659 -~~lt~~~~~~~~~~~sp~~ 677 (721)
.+=..|..++...+|.|+.
T Consensus 367 VARGqGHkSWVs~VaFDpyt 386 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFDPYT 386 (636)
T ss_pred EEeccccccceeeEeecccc
Confidence 3555577788889999853
No 207
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=8.9e-06 Score=77.98 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=138.2
Q ss_pred ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCC--EEEEE-eCC
Q 004971 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGD--RIAFV-EFP 439 (721)
Q Consensus 365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~--~la~~-~~~ 439 (721)
+..|...+..++.+ |.+++..+.+.. |.++|+.... ..+.........+.|.++-+ +|... .++
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDet---------I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDET---------IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCc---------EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 33445555556665 777776555544 5666664432 22222333344566766654 55555 588
Q ss_pred cEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971 440 GVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516 (721)
Q Consensus 440 ~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 516 (721)
.|.+|+...=+.. .+. .+.++.++..|.|+..+.+. .+..+++|.+-.... .....|.. ....+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg-------~D~~lr~WNLV~Gr~---a~v~~L~~---~at~v 174 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG-------GDQVLRTWNLVRGRV---AFVLNLKN---KATLV 174 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc-------CCceeeeehhhcCcc---ceeeccCC---cceee
Confidence 9999998654422 222 45689999999998766664 578888887754332 12233332 34458
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.|+|.|.++++.. ...|-+|.+++... ...+... -.+..+.|- ++..|+++..+. .|..+|.+..
T Consensus 175 ~w~~~Gd~F~v~~----~~~i~i~q~d~A~v--~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~-------~i~~~D~ds~ 239 (362)
T KOG0294|consen 175 SWSPQGDHFVVSG----RNKIDIYQLDNASV--FREIENP-KRILCATFL-DGSELLVGGDNE-------WISLKDTDSD 239 (362)
T ss_pred EEcCCCCEEEEEe----ccEEEEEecccHhH--hhhhhcc-ccceeeeec-CCceEEEecCCc-------eEEEeccCCC
Confidence 9999999888877 35566666665442 3333332 222334444 567787777764 7999998876
Q ss_pred ceEEeeecCCCCCcCCeE--ECCCCCEEEEEEecC
Q 004971 597 GLRKLIQSGSAGRANHPY--FSPDGKSIVFTSDYG 629 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~--~SpDG~~l~~~~~~~ 629 (721)
.+..... +|...+..+. -.|++.+|+.++.++
T Consensus 240 ~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 240 TPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ccceeee-cchhheeeeEEEecCCceEEEEeccCc
Confidence 5444333 2667776665 367788888888776
No 208
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.58 E-value=1.3e-05 Score=80.63 Aligned_cols=286 Identities=12% Similarity=0.111 Sum_probs=173.0
Q ss_pred cceeccCCe--EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 271 WPCWVDEST--LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 271 ~~~ws~dg~--l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
..+|+|-.. +++ ..+..|.+-+|....... +.......+.+...+..+.|+|++-.+|+. +. .++.
T Consensus 191 ~l~fHPt~~~~lva--~GdK~G~VG~Wn~~~~~~-----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-sS----yDGt 258 (498)
T KOG4328|consen 191 SLAFHPTENRKLVA--VGDKGGQVGLWNFGTQEK-----DKDGVYLFTPHSGPVSGLKFSPANTSQIYS-SS----YDGT 258 (498)
T ss_pred EEEecccCcceEEE--EccCCCcEEEEecCCCCC-----ccCceEEeccCCccccceEecCCChhheee-ec----cCce
Confidence 557887633 444 355578899997641111 112556677777788999999944444544 33 3456
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFS 427 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~S 427 (721)
|++.|++++....+..............++.+...+++...-+. ..++....... ...+.........+++.
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~-------f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN-------FNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc-------eEEEEeecCCccchhhhhhhcccceeecC
Confidence 99999998865555443223444566778888888887655443 23333322222 23344444456678888
Q ss_pred cCCCEEEEE-e-CCcEEEEECCCC--ceE-EEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc-cCC
Q 004971 428 PKGDRIAFV-E-FPGVYVVNSDGS--NRR-QVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDV 497 (721)
Q Consensus 428 pDG~~la~~-~-~~~l~v~d~~~g--~~~-~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-~~~ 497 (721)
|--.++... + +..+.+||+..- +.. .|. ...+.+..|||+|-.|+.++ .+.+++||+..- ...
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-------~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-------QDNEIRVFDSSCISAK 404 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-------cCCceEEeeccccccc
Confidence 877665444 3 777889998532 221 222 34677899999999988776 578999998841 111
Q ss_pred CCccceEEcccCC-----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCC
Q 004971 498 DGVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGE 570 (721)
Q Consensus 498 ~~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~ 570 (721)
. .....+.... -.....+|.||-..|++... ...|-++|..+++. +..+.... ....-..|.|-+.
T Consensus 405 ~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~--v~el~~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 405 D--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQM--VCELHDPESSTIPSVNEFHPMRD 477 (498)
T ss_pred C--CccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEE--eeeccCccccccccceeeccccc
Confidence 0 0111111111 12344689999888887765 45688888887763 33333222 1223457999888
Q ss_pred EEEEEEccCCCCCCceeEEEEecCC
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
.++.+++.. ..||+|--++
T Consensus 478 ~~~aG~~s~------Gki~vft~k~ 496 (498)
T KOG4328|consen 478 TLAAGGNSS------GKIYVFTNKK 496 (498)
T ss_pred ceeccCCcc------ceEEEEecCC
Confidence 676666553 3788776443
No 209
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=2e-05 Score=75.51 Aligned_cols=292 Identities=14% Similarity=0.058 Sum_probs=166.9
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
..+..+.|+| .+..|+..+. ++.|.+||......+... .+...+...+|.++ ..+++...++.
T Consensus 14 d~IS~v~f~~-~~~~LLvssW-----DgslrlYdv~~~~l~~~~---~~~~plL~c~F~d~-~~~~~G~~dg~------- 76 (323)
T KOG1036|consen 14 DGISSVKFSP-SSSDLLVSSW-----DGSLRLYDVPANSLKLKF---KHGAPLLDCAFADE-STIVTGGLDGQ------- 76 (323)
T ss_pred hceeeEEEcC-cCCcEEEEec-----cCcEEEEeccchhhhhhe---ecCCceeeeeccCC-ceEEEeccCce-------
Confidence 3567889999 8888877653 345999999877543332 23556667788764 35555444443
Q ss_pred ceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecC
Q 004971 400 NQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 400 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~ 477 (721)
+...|+.++.. .+.........+..++--..++..+ +..|.+||.......-.....-.-+..+-.|.+|++.+
T Consensus 77 --vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~-- 152 (323)
T KOG1036|consen 77 --VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGT-- 152 (323)
T ss_pred --EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEee--
Confidence 55666655432 2222222233345554333444443 78899999875322111112223344455677888865
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-------
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL------- 550 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~------- 550 (721)
.+..+.+|++..-.. ...++-.........+++-|++.-.+..+- +.++++=.++..+..+-
T Consensus 153 -----~~r~v~iyDLRn~~~---~~q~reS~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 153 -----SDRKVLIYDLRNLDE---PFQRRESSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred -----cCceEEEEEcccccc---hhhhccccceeEEEEEEEecCCCceEEEee---cceEEEEccCCchHHhhhceeEEe
Confidence 467888888865432 011111122245566788887666666654 45555543433311000
Q ss_pred EECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 551 HRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 551 ~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
.+.... ...++.++|+|=-+.||.+..++ -|-+||+...+...-... ....+..++|+-||..|+.++
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-------~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-------IVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCc-------eEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEEEe
Confidence 011111 23467899999888888888875 899999977653333221 335578899999999999887
Q ss_pred ecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
......+ ..+ -++.+.|++.++..-
T Consensus 294 sy~ye~~---~~~--~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 294 SYQYERA---DTP--THERNAIFIRDLTDY 318 (323)
T ss_pred chhhhcC---CCC--CCCCCceEEEecccc
Confidence 6432110 011 334556887776543
No 210
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=2.8e-05 Score=74.55 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=158.9
Q ss_pred ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEE
Q 004971 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY 295 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~ 295 (721)
.+...|||.+..|+.++.++ .|.+|+....+.+........ ..+|.++.+++. ..-+|.+..|
T Consensus 16 IS~v~f~~~~~~LLvssWDg------------slrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~---G~~dg~vr~~ 80 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDG------------SLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVT---GGLDGQVRRY 80 (323)
T ss_pred eeeEEEcCcCCcEEEEeccC------------cEEEEeccchhhhhheecCCceeeeeccCCceEEE---eccCceEEEE
Confidence 34458999888888866443 466777665554443333332 337888867766 3336777777
Q ss_pred EEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCc
Q 004971 296 KVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNP 375 (721)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~ 375 (721)
++... ...++-.+...+..+..++..| .++. |+-+..|.+||..... ..... .....+..
T Consensus 81 Dln~~----------~~~~igth~~~i~ci~~~~~~~-~vIs-----gsWD~~ik~wD~R~~~--~~~~~-d~~kkVy~- 140 (323)
T KOG1036|consen 81 DLNTG----------NEDQIGTHDEGIRCIEYSYEVG-CVIS-----GSWDKTIKFWDPRNKV--VVGTF-DQGKKVYC- 140 (323)
T ss_pred EecCC----------cceeeccCCCceEEEEeeccCC-eEEE-----cccCccEEEEeccccc--ccccc-ccCceEEE-
Confidence 54332 3455556666667777777334 3444 4456779999987522 11111 11223433
Q ss_pred EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc----eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc
Q 004971 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI----SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN 450 (721)
Q Consensus 376 ~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~ 450 (721)
.+-.|.+|++...+.. +.+++++.-.... ..+....+.++.-|++.-.+..+ ++.+.+=.++..+
T Consensus 141 -~~v~g~~LvVg~~~r~---------v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 141 -MDVSGNRLVVGTSDRK---------VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred -EeccCCEEEEeecCce---------EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 3334777776443333 4555654332111 11223334455555444333332 4444443332221
Q ss_pred eEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEe
Q 004971 451 RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 451 ~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~ 530 (721)
. ...++.+|-+... ..++.-. -..+..++|+|--+.++....
T Consensus 211 ~--------------~~skkyaFkCHr~---~~~~~~~---------------------~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 211 E--------------AQSKKYAFKCHRL---SEKDTEI---------------------IYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred H--------------HhhhceeEEeeec---ccCCceE---------------------EEEeceeEeccccceEEecCC
Confidence 0 0122333322100 0000000 134566899998888887766
Q ss_pred eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCC
Q 004971 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNG 595 (721)
Q Consensus 531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~ 595 (721)
+.-+-+||+.+.+. +.++......+..++|+-||..||++..-... ......|++.++..
T Consensus 253 ---DG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d 317 (323)
T KOG1036|consen 253 ---DGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTD 317 (323)
T ss_pred ---CceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccc
Confidence 77899999987664 77777666667899999999999998753211 11223466666544
No 211
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=9.4e-05 Score=74.68 Aligned_cols=233 Identities=20% Similarity=0.181 Sum_probs=137.0
Q ss_pred cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCC-ceeCcCCCEEEEEeCCcEEEEECCCCce
Q 004971 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNR 451 (721)
Q Consensus 373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~SpDG~~la~~~~~~l~v~d~~~g~~ 451 (721)
.++.|.++...|+++...+. +++.++...+.......+..... .....+| .+++....+++++.+.+..
T Consensus 28 EgP~w~~~~~~L~w~DI~~~--------~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g--~Lv~~~~g~~~~~~~~~~~ 97 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGG--------RIHRLDPETGKKRVFPSPGGFSSGALIDAGG--RLIACEHGVRLLDPDTGGK 97 (307)
T ss_pred cCccCcCCCCEEEEEeCCCC--------eEEEecCCcCceEEEECCCCcccceeecCCC--eEEEEccccEEEeccCCce
Confidence 46889999999988655543 56666665443333333222222 2334433 3334466778888776665
Q ss_pred -EEEe-------ecCceeeEEcCCCCeEEEEecC---CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 452 -RQVY-------FKNAFSTVWDPVREAVVYTSGG---PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 452 -~~l~-------~~~~~~~~~spdg~~la~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
+.+. ..........|||+.. |...+ .........-.||+++..+. ..+.+..+-.....++|||
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~g~----~~~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPDGG----VVRLLDDDLTIPNGLAFSP 172 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCCCC----EEEeecCcEEecCceEECC
Confidence 4444 1234467888998654 44443 12222333448999996543 4444444345677899999
Q ss_pred CCCEEEEEEeeCCceeEEEEECCC--Cccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEG--GEGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~--g~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
||+.|+++... ...|++++.+. +... .........+....++...||..-+.... +...|-+++.++
T Consensus 173 Dg~tly~aDT~--~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~------~g~~v~~~~pdG 244 (307)
T COG3386 173 DGKTLYVADTP--ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW------GGGRVVRFNPDG 244 (307)
T ss_pred CCCEEEEEeCC--CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc------CCceEEEECCCC
Confidence 99999988753 46788887752 2211 11222223344456677777774332222 224799999984
Q ss_pred CceEEeeecCCCCCcCCeEE-CCCCCEEEEEEecCC
Q 004971 596 TGLRKLIQSGSAGRANHPYF-SPDGKSIVFTSDYGG 630 (721)
Q Consensus 596 ~~~~~l~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~ 630 (721)
+....... .......++| .|+.+.|++++.+.+
T Consensus 245 -~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 245 -KLLGEIKL-PVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred -cEEEEEEC-CCCCCccceEeCCCcCEEEEEecCCC
Confidence 44433332 2255666666 678899998888774
No 212
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.54 E-value=3.6e-06 Score=82.86 Aligned_cols=239 Identities=11% Similarity=0.064 Sum_probs=142.4
Q ss_pred CCCEEEEEEecCCCCeeeEEEEEC-CCCce-EEeecccCCCCcccCcEEcCCCCEEEE-EEeeCCCCCCCCcceeEEEec
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDL-VKNKF-IELTRFVSPKTHHLNPFISPDSSRVGY-HKCRGGSTREDGNNQLLLENI 407 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl-~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~-~~~~~~~~~~~~~~~l~~~~~ 407 (721)
+.++|++.....|+. .+.+.-+ ++|+. .......+|.+.+...+|.|-...++. .+++.. ..+|...-
T Consensus 43 NPkfiAvi~easgGg--af~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~-------v~vW~IPe 113 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGG--AFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK-------VMVWQIPE 113 (472)
T ss_pred CCceEEEEEecCCCc--ceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce-------EEEEECCC
Confidence 558888866554432 2333333 34432 122333556777888999996655444 333333 22333221
Q ss_pred cCC-------CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce-EEEe-ecCceeeEEcCCCCeEEEEec
Q 004971 408 KSP-------LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR-RQVY-FKNAFSTVWDPVREAVVYTSG 476 (721)
Q Consensus 408 ~~~-------~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~-~~l~-~~~~~~~~~spdg~~la~~~~ 476 (721)
.+- ...+......+..++|+|--..+... .+..+.+|++.+|+. ..|. +..+.++.|+-||..|+.++
T Consensus 114 ~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc- 192 (472)
T KOG0303|consen 114 NGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC- 192 (472)
T ss_pred cccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec-
Confidence 111 11122222233456888876554444 488999999999884 4444 67889999999999999987
Q ss_pred CCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECc
Q 004971 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLT 554 (721)
Q Consensus 477 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~ 554 (721)
.+.+++||+...+. .+..-..+. .......|-.+|+.+-..-.+....++-+||...-+. .....|.
T Consensus 193 ------kDKkvRv~dpr~~~-----~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 193 ------KDKKVRVIDPRRGT-----VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ------ccceeEEEcCCCCc-----EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 57889999876543 222222333 4556678999999333333445677999999875432 1123333
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
... .+-.|-|.||.+.||.+... ...|..|.+....
T Consensus 262 tSn-Gvl~PFyD~dt~ivYl~GKG------D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSN-GVLLPFYDPDTSIVYLCGKG------DSSIRYFEITNEP 297 (472)
T ss_pred cCC-ceEEeeecCCCCEEEEEecC------CcceEEEEecCCC
Confidence 333 34678899998877766643 2467777765544
No 213
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=8.3e-05 Score=80.12 Aligned_cols=250 Identities=13% Similarity=0.019 Sum_probs=136.5
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
=++| ||+.+... ......+.++|.++.+...-... ........++|||+++++++...... ..+...
T Consensus 199 Plpn-DGk~l~~~----~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G-----~tl~em 265 (635)
T PRK02888 199 PLPN-DGKDLDDP----KKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEG-----VTLAEM 265 (635)
T ss_pred ccCC-CCCEeecc----cceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccC-----cceeee
Confidence 3577 88866332 23445577889887653221111 33556789999999999876432211 122222
Q ss_pred eccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC----C-c-eEEEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971 406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG----S-N-RRQVY-FKNAFSTVWDPVREAVVYTSGGP 478 (721)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~----g-~-~~~l~-~~~~~~~~~spdg~~la~~~~~~ 478 (721)
+..... .+..+.. ....++.+||++..+ ..+.+.++|..+ + + ...|. ...+..+.+||||+++++...
T Consensus 266 ~a~e~d-~~vvfni-~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-- 340 (635)
T PRK02888 266 MAAERD-WVVVFNI-ARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-- 340 (635)
T ss_pred ccccCc-eEEEEch-HHHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--
Confidence 221111 1111111 011256778986554 567799999887 3 2 23344 567788999999999999863
Q ss_pred CCCCCCCcEEEEEEEccCC-----CC--ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC------C
Q 004971 479 EFASESSEVDIISINVDDV-----DG--VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG------G 545 (721)
Q Consensus 479 ~~~~~~~~~~i~~~~~~~~-----~~--~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~------g 545 (721)
..+.+.|+++..... -. .....++.- +....+.+|.++|+......- +.+|..|+++. |
T Consensus 341 ----lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~---dsqv~kwn~~~a~~~~~g 412 (635)
T PRK02888 341 ----LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFL---DSQIVKWNIEAAIRAYKG 412 (635)
T ss_pred ----CCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEee---cceeEEEehHHHHHHhcc
Confidence 467778877754220 00 001112222 234567799999873333333 67899999875 2
Q ss_pred cc--cceEECcCCCcCceeeE------EccCCCEEEEEEccCC----C--CCCceeEEEEecCCCceEEee
Q 004971 546 EG--YGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDN----P--GSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 546 ~~--~~~~~l~~~~~~~~~~~------~SpDG~~l~~~~~~~~----~--~~~~~~i~~~d~~~~~~~~l~ 602 (721)
+. ..+.++.-+ +...++. -.|||+||+....-.. + +-....-.++|+.+.+.+.+.
T Consensus 413 ~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~ 482 (635)
T PRK02888 413 EKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVH 482 (635)
T ss_pred ccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEe
Confidence 11 112223221 1112222 3799999986543110 0 112344567788776665554
No 214
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.53 E-value=0.00047 Score=80.55 Aligned_cols=346 Identities=11% Similarity=0.075 Sum_probs=172.1
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEE----eCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYST----ELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v----~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
|...+.++...| .|..+ +.......-+..-.......+||||+..||+++.. ..
T Consensus 86 d~~~l~~~~~~G----------di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~------------~~ 143 (928)
T PF04762_consen 86 DSESLCIALASG----------DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE------------GN 143 (928)
T ss_pred CCCcEEEEECCc----------eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC------------CE
Confidence 666677766553 77777 66666666665555555666999999999998633 35
Q ss_pred EEEEEcCCCc--eeEEEecc-CC----cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc
Q 004971 251 IYIFLTRDGT--QRVKIVEN-GG----WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF 323 (721)
Q Consensus 251 i~~~d~~~g~--~~~l~~~~-~~----~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (721)
|.++..+=.. +..+.... +. ...|-...+-+-. + .|...--....+.-. . .....+. ..-...
T Consensus 144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G--s--~gK~aa~~~~~p~~~--~---~d~~~~s-~dd~~~ 213 (928)
T PF04762_consen 144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG--S--AGKAAARQLRDPTVP--K---VDEGKLS-WDDGRV 213 (928)
T ss_pred EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc--c--hhhhhhhhccCCCCC--c---cccCccc-cCCCce
Confidence 6666432111 11121111 11 1234432111110 0 000000000001000 0 0001111 111334
Q ss_pred CceeecCCCCEEEEEEecCCCC-eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971 324 TPATSPGNNKFIAVATRRPTSS-YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~-~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l 402 (721)
.++|-. ||+++|...-..... .+.|++|+-+ |+..... +...+-...++|-|.|..|+........ ..+
T Consensus 214 ~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS--E~v~gLe~~l~WrPsG~lIA~~q~~~~~------~~V 283 (928)
T PF04762_consen 214 RISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS--EPVDGLEGALSWRPSGNLIASSQRLPDR------HDV 283 (928)
T ss_pred EEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc--ccCCCccCCccCCCCCCEEEEEEEcCCC------cEE
Confidence 678888 999998876533333 6789999976 5533332 2223445578999999999987653332 222
Q ss_pred EEEeccCCCC-ccee----cccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc---eEEEe---ecCceeeEEcCCC-Ce
Q 004971 403 LLENIKSPLP-DISL----FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN---RRQVY---FKNAFSTVWDPVR-EA 470 (721)
Q Consensus 403 ~~~~~~~~~~-~~~~----~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~---~~~l~---~~~~~~~~~spdg-~~ 470 (721)
.+..-.+-.. .+.. .......+.|++|+..||+.-...|.+|....-. .+.+. ......+.|+|.. .+
T Consensus 284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred EEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 2222111100 1111 1123456899999999999876668888766544 12232 2233458999954 44
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc-
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG- 549 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~- 549 (721)
|.+.+ ..+.+..+.+.... ..-............--||+.| .+-++...-..+
T Consensus 364 L~v~t-------~~g~~~~~~~~~~v-------~~s~~~~~~D~g~vaVIDG~~l------------llTpf~~a~VPPP 417 (928)
T PF04762_consen 364 LHVLT-------SNGQYEIYDFAWDV-------SRSPGSSPNDNGTVAVIDGNKL------------LLTPFRRAVVPPP 417 (928)
T ss_pred EEEEe-------cCCcEEEEEEEEEE-------EecCCCCccCceEEEEEeCCeE------------EEecccccCCCch
Confidence 55554 23555555544311 1100111112222333344444 443333222100
Q ss_pred --eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 550 --LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 550 --~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
...+. -+..+..++|++++..+++...++ .-.+|.++..
T Consensus 418 Ms~~~l~-~~~~v~~vaf~~~~~~~avl~~d~-----~l~~~~~~~~ 458 (928)
T PF04762_consen 418 MSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG-----SLSIYEWDLK 458 (928)
T ss_pred HhceEEc-CCCCcEEEEEeCCCCeEEEEECCC-----CEEEEEecCC
Confidence 01121 134568899999998777766653 2345555443
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=0.00013 Score=79.58 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=107.9
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
..+..++.|...+.+-...+++|....+...... .......++||.++.++..- .++++.+|+--.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d-------~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD-------SDGRILVWRDFG 236 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec-------cCCcEEEEeccc
Confidence 4467788887777777888999988765522211 12356689999999999874 467888886432
Q ss_pred cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
... .....+.+.=+...+..++||+||.+|+.+.. ..-|.+|.+++++ .+-|+.-...+.++.+|||+...+.
T Consensus 237 ~~~-~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 237 SSD-DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQLETGK---KQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred ccc-ccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEeecCCC---cccccccCCeeEEEEEcCCCCeEEE
Confidence 111 11123333334457788999999999998876 6789999999988 4556655666789999999998887
Q ss_pred EEccCCCCCCceeEEEEecCCC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
...+. +|.+..+.+-
T Consensus 310 ~~~DN-------qI~li~~~dl 324 (792)
T KOG1963|consen 310 VLEDN-------QIHLIKASDL 324 (792)
T ss_pred EecCc-------eEEEEeccch
Confidence 77764 6777666443
No 216
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.52 E-value=2.5e-05 Score=78.63 Aligned_cols=193 Identities=11% Similarity=0.196 Sum_probs=130.9
Q ss_pred CCCCceeCcCCCEEEE-E-eCCcEEEEECCCCce-------EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 420 DGSFPSFSPKGDRIAF-V-EFPGVYVVNSDGSNR-------RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~-~-~~~~l~v~d~~~g~~-------~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
.+..+.|++.-.-... . .+..+.+||+..... +.++ ...+..++|.+-...|+... .+++.+
T Consensus 179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv------~dd~~L 252 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV------GDDGKL 252 (422)
T ss_pred cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee------cCCCeE
Confidence 3566788876543222 2 588999999864322 2233 44677899999777666554 367899
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp 567 (721)
.||+...... ........+...+..++|.|=+.+|+.+... +.+|.+||+.+-.. .+..+..+...+..+.|||
T Consensus 253 ~iwD~R~~~~---~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~--D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 253 MIWDTRSNTS---KPSHSVKAHSAEVNCVAFNPFNEFILATGSA--DKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred EEEEcCCCCC---CCcccccccCCceeEEEeCCCCCceEEeccC--CCcEEEeechhccc-CceeccCCCcceEEEEeCC
Confidence 9999886321 1334455566788889999977766655432 67899999986542 3556667777789999999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCCCceEE------------ee-ecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK------------LI-QSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+-..|+.++... ..+.+||+..-...+ ++ ..+|...+..+.|.|..-+++.+..+++
T Consensus 327 h~etvLASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 327 HNETVLASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred CCCceeEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 987776665532 378889985422221 22 2245567788999999999887776664
No 217
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.52 E-value=6.3e-06 Score=82.87 Aligned_cols=290 Identities=13% Similarity=-0.020 Sum_probs=165.6
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCC---cceeEEEec----cCCCCcce----ecccCCCCceeCcCCCEEEEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDG---NNQLLLENI----KSPLPDIS----LFRFDGSFPSFSPKGDRIAFV 436 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~---~~~l~~~~~----~~~~~~~~----~~~~~~~~~~~SpDG~~la~~ 436 (721)
|...+.+++++||+++++.++.++....|.. ...-+++.- ...-..+. ......-.+++|+||++|++.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4455667888888888876655443221110 000011111 00100000 111122246899999999999
Q ss_pred e-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971 437 E-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512 (721)
Q Consensus 437 ~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 512 (721)
+ +..+.+|+.++.+....+ .+.+...+|-..-..|+.++ .+..+.+|.++..+ -+..+-.+...
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~~~~~s-----~vetlyGHqd~ 288 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWSIDQLS-----YVETLYGHQDG 288 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-------cCCceEEEehhHhH-----HHHHHhCCccc
Confidence 6 566779999999877664 45677888877777777776 57889999988644 34455555555
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
+..+....-++ ++.+..+ +..+.+|++.. + .+.+. .+...+..++|-. ..+++.++.++ .|++|
T Consensus 289 v~~IdaL~reR-~vtVGgr--DrT~rlwKi~e-e---sqlifrg~~~sidcv~~In-~~HfvsGSdnG-------~IaLW 353 (479)
T KOG0299|consen 289 VLGIDALSRER-CVTVGGR--DRTVRLWKIPE-E---SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG-------SIALW 353 (479)
T ss_pred eeeechhcccc-eEEeccc--cceeEEEeccc-c---ceeeeeCCCCCeeeEEEec-ccceeeccCCc-------eEEEe
Confidence 55554444444 4455444 56677777742 2 22222 2334455667764 45778888775 89999
Q ss_pred ecCCCceEEeeecCCC-----------CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--Ce
Q 004971 592 HPNGTGLRKLIQSGSA-----------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DL 658 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~-----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~ 658 (721)
++...++.-+....|. ..+.+++..|....++..+.++. |.+|-...+ ..
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-----------------vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-----------------VRLWKIEDGLRAI 416 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-----------------eEEEEecCCcccc
Confidence 9988876544433221 14456677776666665555443 555555544 33
Q ss_pred EEecc--CCCCCCCceecCCc--CCccccccccccccccccccceeeccCCCCc
Q 004971 659 KRLTQ--NSFEDGTPAWGPRF--IRPVDVEEVKNEQCAFEDCHWLNETPNQRDW 708 (721)
Q Consensus 659 ~~lt~--~~~~~~~~~~sp~~--l~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 708 (721)
..|.. ..+.+...+|+++. +..+- --..+...|........-+
T Consensus 417 ~~l~~ls~~GfVNsl~f~~sgk~ivagi-------GkEhRlGRW~~~k~~~~~~ 463 (479)
T KOG0299|consen 417 NLLYSLSLVGFVNSLAFSNSGKRIVAGI-------GKEHRLGRWWCLKSGKNSG 463 (479)
T ss_pred ceeeecccccEEEEEEEccCCCEEEEec-------ccccccceeeEeecccccc
Confidence 34433 23456677777752 22221 1123345677776655544
No 218
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.50 E-value=5.5e-06 Score=81.62 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=110.8
Q ss_pred ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC--CccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD--GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
.+.+.++.|.|-...++... .++.++.||.+..++.. -...+..|..|...+..++|+|--.-+++++. +
T Consensus 81 t~~vLDi~w~PfnD~vIASg------SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--~ 152 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASG------SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--S 152 (472)
T ss_pred cccccccccCccCCceeecC------CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc--C
Confidence 45678899999665554443 36889999999876531 11245567777778888999998776665543 2
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC-CcCC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANH 612 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~ 612 (721)
+..+.+|++.+|+. +..+. ++..+.++.|+-||.+|+.+..+. .|.+||..+++....-. .|.+ ....
T Consensus 153 Dn~v~iWnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDK-------kvRv~dpr~~~~v~e~~-~heG~k~~R 221 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDK-------KVRVIDPRRGTVVSEGV-AHEGAKPAR 221 (472)
T ss_pred CceEEEEeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccc-------eeEEEcCCCCcEeeecc-cccCCCcce
Confidence 78999999999986 55666 777788999999999999988875 89999999987665542 2433 3456
Q ss_pred eEECCCCCEEEEEE
Q 004971 613 PYFSPDGKSIVFTS 626 (721)
Q Consensus 613 ~~~SpDG~~l~~~~ 626 (721)
..|-.+|+ |+.+.
T Consensus 222 aifl~~g~-i~tTG 234 (472)
T KOG0303|consen 222 AIFLASGK-IFTTG 234 (472)
T ss_pred eEEeccCc-eeeec
Confidence 77888999 44443
No 219
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.49 E-value=7.7e-07 Score=86.54 Aligned_cols=210 Identities=11% Similarity=0.080 Sum_probs=130.0
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
..+.++. +..+....+..|..|.+++.....+. ......+.-..-+..+ ......+.||+...+.
T Consensus 113 ~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~F---------aTcGe~i~IWD~~R~~---- 178 (433)
T KOG0268|consen 113 RGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVF---------ATCGEQIDIWDEQRDN---- 178 (433)
T ss_pred eeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccc---------cccCceeeecccccCC----
Confidence 3445554 33344445778888887775333333 2222222222222222 2234679999987654
Q ss_pred cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
.+..++-+......+.|+|-...|+..... +..|+++|+..+.+ ++.+... ...+.++|+|.+--++.+..+
T Consensus 179 -Pv~smswG~Dti~svkfNpvETsILas~~s--DrsIvLyD~R~~~P--l~KVi~~-mRTN~IswnPeafnF~~a~ED-- 250 (433)
T KOG0268|consen 179 -PVSSMSWGADSISSVKFNPVETSILASCAS--DRSIVLYDLRQASP--LKKVILT-MRTNTICWNPEAFNFVAANED-- 250 (433)
T ss_pred -ccceeecCCCceeEEecCCCcchheeeecc--CCceEEEecccCCc--cceeeee-ccccceecCccccceeecccc--
Confidence 455555544566778999988877766533 67899999998886 5544432 223679999944333333333
Q ss_pred CCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 581 PGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 581 ~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
..||.+|+..-+ +..+.. ++...+.++.|||-|+.++..+.+.. |.++....+..+
T Consensus 251 -----~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDks-----------------IRIf~~~~~~SR 307 (433)
T KOG0268|consen 251 -----HNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKS-----------------IRIFPVNHGHSR 307 (433)
T ss_pred -----ccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccce-----------------EEEeecCCCcch
Confidence 489999986532 222322 25556778999999999999998875 777777777777
Q ss_pred EeccCC--CCCCCceecCC
Q 004971 660 RLTQNS--FEDGTPAWGPR 676 (721)
Q Consensus 660 ~lt~~~--~~~~~~~~sp~ 676 (721)
.+.... ..+....||-+
T Consensus 308 diYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 308 DIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred hhhhHhhhheeeEEEEecc
Confidence 666432 23566788876
No 220
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.48 E-value=0.00011 Score=79.23 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 510 ~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
+.....+.+||||+++++.+.. ...+-++|+++.+. ....++.-+.+ ..+.+|+++|. +|++.-
T Consensus 320 GKsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~--aytslf- 393 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGN--AYTTLF- 393 (635)
T ss_pred CCCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCC--EEEeEe-
Confidence 3477889999999999988764 45788888876431 01222222222 24678999987 343332
Q ss_pred CCCCCceeEEEEecCC------C-ceEEeee-cCCCCCcCC------eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 580 NPGSGSFEMYLIHPNG------T-GLRKLIQ-SGSAGRANH------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~------~-~~~~l~~-~~~~~~~~~------~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
-..+|-.|+++. | +...+.. ..-.....+ -.-.|||+||+....-+..++-+ .+|.+ +
T Consensus 394 ----~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~-vgpl~---p 465 (635)
T PRK02888 394 ----LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP-VGPLH---P 465 (635)
T ss_pred ----ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC-CCCCC---C
Confidence 124899999875 1 1112221 001111222 23489999998766544322111 11111 1
Q ss_pred ccEEEEEcCCCCeEEeccC
Q 004971 646 GEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 646 ~~l~~~d~~~~~~~~lt~~ 664 (721)
..-.++|+.|.+++.|.++
T Consensus 466 en~qlidIsgdkM~lv~d~ 484 (635)
T PRK02888 466 ENDQLIDISGDKMKLVHDG 484 (635)
T ss_pred CcceeEEccCCeeEEEecC
Confidence 1234568888888888764
No 221
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.7e-07 Score=98.20 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=149.8
Q ss_pred CcccCcEEcCCCCE----EEEEEeeCCCCCCCCcceeEEEec--cCCC----CcceecccCCCCceeCcCCC-EEEEE-e
Q 004971 370 THHLNPFISPDSSR----VGYHKCRGGSTREDGNNQLLLENI--KSPL----PDISLFRFDGSFPSFSPKGD-RIAFV-E 437 (721)
Q Consensus 370 ~~~~~~~~Spdg~~----l~~~~~~~~~~~~~~~~~l~~~~~--~~~~----~~~~~~~~~~~~~~~SpDG~-~la~~-~ 437 (721)
.....++|++.|.. |+-..+++. ..+|..+- .... .....+.+.+..+.|++.+. .||.. +
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~-------I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGN-------IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCc-------eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 34556899988877 443333333 23332221 1111 11222334455688998877 56665 5
Q ss_pred CCcEEEEECCCCce-EEE----eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--
Q 004971 438 FPGVYVVNSDGSNR-RQV----YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-- 510 (721)
Q Consensus 438 ~~~l~v~d~~~g~~-~~l----~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-- 510 (721)
+++|++||+..-+. -.. ....+..++|...-.+|+... ...+...||++..+. .+..+..+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~------s~sg~~~iWDlr~~~-----pii~ls~~~~~ 206 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG------SPSGRAVIWDLRKKK-----PIIKLSDTPGR 206 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc------CCCCCceeccccCCC-----cccccccCCCc
Confidence 89999999976331 111 145678889987766665544 246789999998764 455555554
Q ss_pred CCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971 511 KNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589 (721)
Q Consensus 511 ~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~ 589 (721)
.....++|+||+. +|+++++.+....|-+||+.--.. .++.+..|...+..+.|++.+..+++++... .+|+
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii 279 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRII 279 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCC------CCee
Confidence 2356789999876 566677766777899999764331 2455566777788999999886666666543 3899
Q ss_pred EEecCCCceEEeeecCCCCCcCCeEECCCCC-EEEEEEecC
Q 004971 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGK-SIVFTSDYG 629 (721)
Q Consensus 590 ~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~-~l~~~~~~~ 629 (721)
.|+..+++..--... .......+.|.|..- .++.++.++
T Consensus 280 ~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 280 CWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred EecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheecc
Confidence 999999876543332 345677899999775 445555544
No 222
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.47 E-value=2.5e-05 Score=78.64 Aligned_cols=248 Identities=11% Similarity=0.082 Sum_probs=149.1
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe--------ecccCCCCcccCcEEcCCCCEEEEEE
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL--------TRFVSPKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l--------~~~~~~~~~~~~~~~Spdg~~l~~~~ 388 (721)
.+...+..+..-| -...|+.... ....+++||......+.. ..+.+|.....++.|++...-.....
T Consensus 122 ~h~gEVnRaRymP-Qnp~iVAt~t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMP-QNPNIVATKT----SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCC-CCCcEEEecC----CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3344455555556 5444443221 233478888764321111 12233444455688888765433322
Q ss_pred eeCCCCCCCCcceeEEEeccCCCC------cceec---ccCCCCceeCcCCCEE-EEE-eCCcEEEEECCCC--ceEEEe
Q 004971 389 CRGGSTREDGNNQLLLENIKSPLP------DISLF---RFDGSFPSFSPKGDRI-AFV-EFPGVYVVNSDGS--NRRQVY 455 (721)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~---~~~~~~~~~SpDG~~l-a~~-~~~~l~v~d~~~g--~~~~l~ 455 (721)
... ..+.++++..... ....+ ...+...+|++-...+ +++ .++.|.+||+.++ +.....
T Consensus 197 ~~d--------~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 197 SDD--------HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cCC--------CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 222 2356666543211 11111 1223456787755443 334 4788999999853 222222
Q ss_pred ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971 456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
.+.+..++|+|-+..|+.+. ..++.+.||++.--.. .+..+..+...+..+.|||....++..+..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~------S~D~tV~LwDlRnL~~----~lh~~e~H~dev~~V~WSPh~etvLASSg~- 337 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATG------SADKTVALWDLRNLNK----PLHTFEGHEDEVFQVEWSPHNETVLASSGT- 337 (422)
T ss_pred cccCCceeEEEeCCCCCceEEec------cCCCcEEEeechhccc----CceeccCCCcceEEEEeCCCCCceeEeccc-
Confidence 56788999999887777665 3689999998864443 667778888889999999999988877654
Q ss_pred CceeEEEEECCCCcc---------cceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 533 GYKNLYIMDAEGGEG---------YGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 533 g~~~l~~~d~~~g~~---------~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+.++.+||+..-.. .++..+. .+...+..+.|.|...|++.+..+. ..|.+|.+..
T Consensus 338 -D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~ 405 (422)
T KOG0264|consen 338 -DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE 405 (422)
T ss_pred -CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence 66788888753211 1122222 2344578899999999988887764 3677787753
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.47 E-value=9.4e-06 Score=82.99 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYV 443 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v 443 (721)
..|.+.+....|+|||.-|+.+.+++- ..+|.. ++. ..+.+........+|.|+...++|+..+.+++
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~-------iKiWSr---sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~I 170 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGV-------IKIWSR---SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISI 170 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCce-------EEEEec---cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEE
Confidence 345667778899999999998877776 445543 221 12233334456689999999999998889998
Q ss_pred EECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 444 VNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 444 ~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
-.+.-.. +.+-. ++.+....|++....++... ++-+..||+-.-. .+..-..++..+.+.+|.|
T Consensus 171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-------ED~kfKvWD~~G~------~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-------EDFRFKIWDAQGA------NLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eecccccceeEEeccCcEEEEeecCccccceeecC-------CceeEEeecccCc------ccccCChhccceeeeeecc
Confidence 8875432 22222 77888999999999888764 5667778764321 2333334557788899999
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
| +-+++.+ ...+++=. ...+.+..++|||||.+++.+...+
T Consensus 238 d-~~~~v~S----~nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 238 E-KDYLLWS----YNTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred c-cceeeee----eeeeeecC-------------CCccceEEEEEcCCCceeeccccCc
Confidence 9 4333333 22232111 1234567899999999999887654
No 224
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.46 E-value=3e-05 Score=73.65 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=134.4
Q ss_pred CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCC-e-EEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVRE-A-VVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 422 ~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~-~-la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
..+.|-|-..-+... .+..|.+||..+-+....+ ++.+..-+|||-.. . |+.+. .++.++++.++...
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g------tr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG------TRDVQVRLCDIASG 178 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe------cCCCcEEEEeccCC
Confidence 344555543333333 3778999999887655544 67788889998654 2 22222 35678888888765
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC--Ccc-----------cceEECcCCCcCcee
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG--GEG-----------YGLHRLTEGPWSDTM 562 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~--g~~-----------~~~~~l~~~~~~~~~ 562 (721)
. ....|..+...+..+.|||...++++...- +..|.+||+.. |-. ..++.-+.+.+.++.
T Consensus 179 s-----~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa--Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 179 S-----FSHTLSGHRDGVLAVEWSPSSEWVLATGSA--DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG 251 (397)
T ss_pred c-----ceeeeccccCceEEEEeccCceeEEEecCC--CceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence 4 667888888889999999999999887654 45677777642 210 001112233445688
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--cCCCCCcCCeEE---CCCCCEEEEEEecCCCcCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--SGSAGRANHPYF---SPDGKSIVFTSDYGGISAEPIS 637 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~---SpDG~~l~~~~~~~~~~~~~~~ 637 (721)
++|+.||++++....+. .+.+|+...|+-..... ..+. .-.++++ +-+...+++.-+++
T Consensus 252 la~tSd~~~l~~~gtd~-------r~r~wn~~~G~ntl~~~g~~~~n-~~~~~~~~~~~~~s~vfv~~p~~~-------- 315 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDD-------RIRVWNMESGRNTLREFGPIIHN-QTTSFAVHIQSMDSDVFVLFPNDG-------- 315 (397)
T ss_pred eeecccchhhhhccCcc-------ceEEeecccCccccccccccccc-ccccceEEEeecccceEEEEecCC--------
Confidence 99999999999888875 89999998875332211 0011 0111211 33444444444332
Q ss_pred CCCCCCCCccEEEEEcCC-CCeEEeccCCCCCCCceecCCc
Q 004971 638 TPHQYQPYGEIFKIKLDG-SDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 638 ~~~~~~~~~~l~~~d~~~-~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
.|+++++-. ..++.+..+.......+|.|++
T Consensus 316 ---------~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 316 ---------SLALLNLLEGSFVRRLSTHLKRINCAAYRPDF 347 (397)
T ss_pred ---------eEEEEEccCceEEEeeecccceeeEEeecCch
Confidence 377777544 4566777665555566666754
No 225
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=5.2e-06 Score=86.87 Aligned_cols=196 Identities=15% Similarity=0.045 Sum_probs=132.8
Q ss_pred CceeCcCCCEEEEE-eCCcEEEEECCCCc---eEEEe--ecCceeeEE-cCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 423 FPSFSPKGDRIAFV-EFPGVYVVNSDGSN---RRQVY--FKNAFSTVW-DPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 423 ~~~~SpDG~~la~~-~~~~l~v~d~~~g~---~~~l~--~~~~~~~~~-spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
.++...+|+.|+.+ .+..|.+|+...+. ...|. ...+..+++ .++...+|.. .-+.++.||+++..
T Consensus 78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSg-------GLD~~IflWDin~~ 150 (735)
T KOG0308|consen 78 DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASG-------GLDRKIFLWDINTG 150 (735)
T ss_pred hHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEec-------CCCccEEEEEccCc
Confidence 34556678777777 58899999986553 12222 556777777 4444444433 25789999999864
Q ss_pred CC-----CCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 496 DV-----DGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 496 ~~-----~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
.. ........+. .....+++++-.+.|..|+..+. ...|.+||..+++. +..|-.+...+..+..++||
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt---ek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT---EKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc---ccceEEeccccccc--eeeeeccccceEEEEEcCCC
Confidence 21 0000111222 12245667777788855554444 67899999998875 77777787778889999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (721)
++++.++.++ .|.+||+.-.++..-... |...++...-+|+-+++|+.+.+. .||
T Consensus 226 t~~ls~sSDg-------tIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf~~vYsG~rd~-----------------~i~ 280 (735)
T KOG0308|consen 226 TRLLSASSDG-------TIRLWDLGQQRCLATYIV-HKEGVWALQSSPSFTHVYSGGRDG-----------------NIY 280 (735)
T ss_pred CeEeecCCCc-------eEEeeeccccceeeeEEe-ccCceEEEeeCCCcceEEecCCCC-----------------cEE
Confidence 9999999886 899999977655443333 556678888888888887765554 388
Q ss_pred EEEcCC
Q 004971 650 KIKLDG 655 (721)
Q Consensus 650 ~~d~~~ 655 (721)
+-|+.+
T Consensus 281 ~Tdl~n 286 (735)
T KOG0308|consen 281 RTDLRN 286 (735)
T ss_pred ecccCC
Confidence 888777
No 226
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=1.2e-05 Score=76.86 Aligned_cols=267 Identities=13% Similarity=0.080 Sum_probs=162.1
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec--cCC----------CC
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--KSP----------LP 412 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~----------~~ 412 (721)
.+....+|.+++|+ -|....+|.+.+..+.|++.+..++..+.+... .||.... ..+ +.
T Consensus 168 ADhTA~iWs~Esg~--CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta-------HIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 168 ADHTARIWSLESGA--CLATYTGHTGSVNSIKFHNSGLLLLTASGDETA-------HIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cccceeEEeecccc--ceeeecccccceeeEEeccccceEEEccCCcch-------HHHHHhhcCcCCCCCCCCCCCchh
Confidence 34456799999998 555667888889999999999888877766663 3333111 111 00
Q ss_pred cceecccCCCC--ceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971 413 DISLFRFDGSF--PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 413 ~~~~~~~~~~~--~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~ 490 (721)
++......... -..+.||..|- +=++.+.+- .+.+....|-..|+.++..+ -+....+|
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiR------vPl~~ltgH------~~vV~a~dWL~gg~Q~vTaS-------WDRTAnlw 299 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIR------VPLMRLTGH------RAVVSACDWLAGGQQMVTAS-------WDRTANLW 299 (481)
T ss_pred hhhcccccccccccccccCCceee------eeeeeeecc------ccceEehhhhcCcceeeeee-------ccccceee
Confidence 11100000000 01112222111 111111110 23445667878888888776 46778899
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~ 570 (721)
++.... .+..|+.++....+..-.|..+.++..+. +....+||... ....+..+..+...+.+..|.-|.+
T Consensus 300 DVEtge-----~v~~LtGHd~ELtHcstHptQrLVvTsSr---DtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 300 DVETGE-----VVNILTGHDSELTHCSTHPTQRLVVTSSR---DTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred eeccCc-----eeccccCcchhccccccCCcceEEEEecc---CceeEeccchh-hcceeeeecccccceeEEEEecCCc
Confidence 998754 66778888877778888888765555544 66778888762 2222333445566678899988765
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (721)
++.++++. .|.+||+..-..-.-+. .....++.++.|..++.|+.-.. ++++.+
T Consensus 371 -vVSgSDDr-------TvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhD-----------------NRqvRl 424 (481)
T KOG0300|consen 371 -VVSGSDDR-------TVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHD-----------------NRQVRL 424 (481)
T ss_pred -eeecCCCc-------eEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccC-----------------CceEEE
Confidence 66666553 89999997754322222 14556778888877776665332 247999
Q ss_pred EEcCCCCeEEecc-----CCCCCCCceec
Q 004971 651 IKLDGSDLKRLTQ-----NSFEDGTPAWG 674 (721)
Q Consensus 651 ~d~~~~~~~~lt~-----~~~~~~~~~~s 674 (721)
+|+.|..+.+|.. |...+...+|+
T Consensus 425 fDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 425 FDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred EecCCCccccCCcccccccceeeeeeecc
Confidence 9999998888874 23334556665
No 227
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.001 Score=70.44 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=156.7
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---c-cCCCCceeCcCCCEEEEEe--CCcEEEE
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---R-FDGSFPSFSPKGDRIAFVE--FPGVYVV 444 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~SpDG~~la~~~--~~~l~v~ 444 (721)
........++|..++........ +...+.. ....... . .......++++|.+++... ...+.++
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~--------~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vi 101 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSND--------VSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVI 101 (381)
T ss_pred CCceeEEcCccCEEEEEeecCce--------eeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEE
Confidence 44567788888777775543331 1111111 0011110 0 2234568889998877774 6789999
Q ss_pred ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971 445 NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522 (721)
Q Consensus 445 d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg 522 (721)
|..+.+..... ......++++|+++.++++..+ .....++.++..+. .+.............+++|+|
T Consensus 102 d~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~------~~~~~vsvid~~t~----~~~~~~~vG~~P~~~a~~p~g 171 (381)
T COG3391 102 DTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG------NGNNTVSVIDAATN----KVTATIPVGNTPTGVAVDPDG 171 (381)
T ss_pred cCcccceeeEeeeccCCceEEECCCCCEEEEEecc------cCCceEEEEeCCCC----eEEEEEecCCCcceEEECCCC
Confidence 97665543322 3367789999999999998631 14566777776654 222222222234788999999
Q ss_pred CEEEEEEeeCCceeEEEEECCCCcccceEE------CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHR------LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
++++.... ....|.++|.++.. +.+ +..+ .....+.++|||+.++...... ....+...|..++
T Consensus 172 ~~vyv~~~--~~~~v~vi~~~~~~---v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~----~~~~v~~id~~~~ 241 (381)
T COG3391 172 NKVYVTNS--DDNTVSVIDTSGNS---VVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGS----GSNNVLKIDTATG 241 (381)
T ss_pred CeEEEEec--CCCeEEEEeCCCcc---eeccccccccccC-CCCceEEECCCCCEEEEEeccC----CCceEEEEeCCCc
Confidence 99988873 36789999987665 332 2222 2236789999999888777653 2358999999888
Q ss_pred ceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 597 GLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 597 ~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
........ ... ....+..+|+|++++......+ .+++.|..+..+...
T Consensus 242 ~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~----------------~V~vid~~~~~v~~~ 290 (381)
T COG3391 242 NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG----------------TVSVIDGATDRVVKT 290 (381)
T ss_pred eEEEeccccccC-CCCceeECCCCCEEEEEecCCC----------------eEEEEeCCCCceeee
Confidence 76655221 122 5677899999999988766643 488888877665543
No 228
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=0.00046 Score=75.39 Aligned_cols=326 Identities=11% Similarity=0.069 Sum_probs=175.5
Q ss_pred ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC-------CcceeccCCeEEEEeccCCCCcEEE
Q 004971 222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG-------GWPCWVDESTLFFHRKSEEDDWISV 294 (721)
Q Consensus 222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~-------~~~~ws~dg~l~~~~~~~~~g~~~l 294 (721)
.+++-|.+.+.+. ...++.|....+.......... ...+++|.++++.+ .+.+|.+.+
T Consensus 167 ~~~~~ge~~~i~~-------------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa--~d~dGrI~v 231 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-------------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA--GDSDGRILV 231 (792)
T ss_pred EEcCCceEEEEEE-------------eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE--eccCCcEEE
Confidence 5677776665543 3567777776655221111111 12478899887774 344788999
Q ss_pred EEEec-CCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971 295 YKVIL-PQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373 (721)
Q Consensus 295 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~ 373 (721)
|+-.. .+.. ...+.+--|...+..++||+ ||.+|+. |+....+.+|.+++++.+-|.+. +..+.
T Consensus 232 w~d~~~~~~~------~t~t~lHWH~~~V~~L~fS~-~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRL---gs~I~ 296 (792)
T KOG1963|consen 232 WRDFGSSDDS------ETCTLLHWHHDEVNSLSFSS-DGAYLLS-----GGREGVLVLWQLETGKKQFLPRL---GSPIL 296 (792)
T ss_pred Eecccccccc------ccceEEEecccccceeEEec-CCceEee-----cccceEEEEEeecCCCccccccc---CCeeE
Confidence 95322 1111 13344444445678899999 9998876 34445699999999986556655 66688
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec---cCC--CCcceec--------ccCCCCceeCcCCCEEEEE-eCC
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI---KSP--LPDISLF--------RFDGSFPSFSPKGDRIAFV-EFP 439 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~~~~~--------~~~~~~~~~SpDG~~la~~-~~~ 439 (721)
++.+|||+........++. +.+... ... ...+... ..-...+.++|--+.+++. ..+
T Consensus 297 ~i~vS~ds~~~sl~~~DNq---------I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 297 HIVVSPDSDLYSLVLEDNQ---------IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred EEEEcCCCCeEEEEecCce---------EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence 8999999998887776665 222221 111 1111110 1112345677744455665 366
Q ss_pred cEEEEECCCCc-eEEEe-------ec------CceeeEEcCCCCeEEEEecCCCC---CCCCCcEEEEEEEccCCCCccc
Q 004971 440 GVYVVNSDGSN-RRQVY-------FK------NAFSTVWDPVREAVVYTSGGPEF---ASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 440 ~l~v~d~~~g~-~~~l~-------~~------~~~~~~~spdg~~la~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
.|..||+-+.+ ...+. ++ .+...+.+-.|.+++......+. .......++|..+.+.. ...-
T Consensus 368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-t~~L 446 (792)
T KOG1963|consen 368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-TFIL 446 (792)
T ss_pred eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc-eeEE
Confidence 77788875443 22211 11 23456667778888876532111 11134567787776542 0000
Q ss_pred eEEcc-cCCCCCcceEE-ccCCC-EEEEEEeeCCceeEEEEECCCC----cc-cceEECc-CCCcCceeeEEccCCCEEE
Q 004971 503 VRRLT-TNGKNNAFPSV-SPDGK-WIVFRSTRTGYKNLYIMDAEGG----EG-YGLHRLT-EGPWSDTMCNWSPDGEWIA 573 (721)
Q Consensus 503 ~~~l~-~~~~~~~~~~~-SpDg~-~l~~~s~~~g~~~l~~~d~~~g----~~-~~~~~l~-~~~~~~~~~~~SpDG~~l~ 573 (721)
...+. .++.......+ +|-.. +.++++. ++.-.||.+.-+.. .. -....+. .+...+..++||-||+.|+
T Consensus 447 ~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla 525 (792)
T KOG1963|consen 447 NTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA 525 (792)
T ss_pred EEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence 11111 12212222233 33333 4555544 33344554421111 00 0011111 1234467899999998777
Q ss_pred EEEccCCCCCCceeEEEEecCCC
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.+..+ .|-+||..+.
T Consensus 526 ~s~~~--------~Itiwd~~~~ 540 (792)
T KOG1963|consen 526 VSFDD--------TITIWDYDTK 540 (792)
T ss_pred EecCC--------EEEEecCCCh
Confidence 66665 7999998773
No 229
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.42 E-value=3.1e-05 Score=74.76 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=123.8
Q ss_pred eeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCe
Q 004971 401 QLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREA 470 (721)
Q Consensus 401 ~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~ 470 (721)
.|++.+.... ...+.........+.+.|+...|+.. .+..|.+|++.+....-+. .+.+.++.|++||.+
T Consensus 116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~ 195 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR 195 (385)
T ss_pred EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence 3566665433 23344444455667888988666555 4788999999998877776 245779999999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc---ccCC-------CCCcceEEc-cC------------CCEEEE
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL---TTNG-------KNNAFPSVS-PD------------GKWIVF 527 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l---~~~~-------~~~~~~~~S-pD------------g~~l~~ 527 (721)
|+... .+..+.+|+++...- ...++.. .... .....|.|| .| |.+++.
T Consensus 196 i~ScG-------mDhslk~W~l~~~~f--~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilS 266 (385)
T KOG1034|consen 196 IASCG-------MDHSLKLWRLNVKEF--KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILS 266 (385)
T ss_pred eeccC-------CcceEEEEecChhHH--hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheee
Confidence 88775 578999999985321 0000000 0000 011122221 11 222221
Q ss_pred EEeeCCceeEEEEECC-CCcc-----------cceEECcCCCcCcee--eEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 528 RSTRTGYKNLYIMDAE-GGEG-----------YGLHRLTEGPWSDTM--CNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~-~g~~-----------~~~~~l~~~~~~~~~--~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.+..+.|..|-.. =++. ..+..+.-....+.. .+|.|-+++||.+...+ .+|+||+
T Consensus 267 ---kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g-------~v~vwdL 336 (385)
T KOG1034|consen 267 ---KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG-------KVYVWDL 336 (385)
T ss_pred ---cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC-------cEEEEEC
Confidence 1235577777661 1110 001111111222333 45667788888877664 8999999
Q ss_pred CCCce---EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 594 NGTGL---RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 594 ~~~~~---~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+..++ .+++.......+...+||-||..|++...+..
T Consensus 337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 87765 33443323456788999999999988777663
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.42 E-value=1.2e-05 Score=84.22 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=121.3
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
...++|-|||+.|+.+.+..++++|...|. .+.+. ..-+..++||.||++++..+ .+..+.||.-...+.
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-------aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSKLEGI 87 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-------CceeEEEecccccce
Confidence 345799999999999999999999997665 45555 56788999999999998765 466777777665542
Q ss_pred CCc---cce---------------------------EEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 498 DGV---SAV---------------------------RRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 498 ~~~---~~~---------------------------~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
... ... +.+..+ .......+|..||++++..-. +..|-+-+.. |
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~---nGTIsiRNk~-g 163 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMF---NGTISIRNKN-G 163 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEecc---CceEEeecCC-C
Confidence 000 000 000011 123445789999999988765 5667666544 4
Q ss_pred cccc-eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971 546 EGYG-LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 546 ~~~~-~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG 619 (721)
+++. +.+-......+.+++|+|.. ..+++.... .++-.+.+++....+--. .+.....+++-++|
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-------qTLSFy~LsG~~Igk~r~--L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG-------QTLSFYQLSGKQIGKDRA--LNFDPCCISYFTNG 234 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc-------ceeEEEEecceeeccccc--CCCCchhheeccCC
Confidence 4321 11222234557788888863 245555544 367777776643221111 23445678888999
Q ss_pred CEEEEEEecCC
Q 004971 620 KSIVFTSDYGG 630 (721)
Q Consensus 620 ~~l~~~~~~~~ 630 (721)
.++.....+..
T Consensus 235 Ey~LiGGsdk~ 245 (1081)
T KOG1538|consen 235 EYILLGGSDKQ 245 (1081)
T ss_pred cEEEEccCCCc
Confidence 99998877764
No 231
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=2.9e-05 Score=76.21 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=107.4
Q ss_pred cEEEEECCCCc-eEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCc
Q 004971 440 GVYVVNSDGSN-RRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNA 514 (721)
Q Consensus 440 ~l~v~d~~~g~-~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~ 514 (721)
.+.+++...+. .-.+. +..+..+.+ +-++|++.- ...+.||++..-. .+..+...+ ....
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm--Nr~RLvV~L--------ee~IyIydI~~Mk-----lLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSILAVRM--NRKRLVVCL--------EESIYIYDIKDMK-----LLHTIETTPPNPKGLC 133 (391)
T ss_pred eEEEEEcccCceEEEEecCCceEEEEE--ccceEEEEE--------cccEEEEecccce-----eehhhhccCCCccceE
Confidence 46666665433 22232 445555555 345666664 2347777765322 233333331 2233
Q ss_pred ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
.+++++++.+|+|-+.++ ..+|++||..+-++ +..+..|.+.+..++|+|||..||.++.++ .-|.++.+.
T Consensus 134 AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATASeKG------TVIRVf~v~ 204 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTT-SGDVVLFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATASEKG------TVIRVFSVP 204 (391)
T ss_pred eeccCCCCceEEecCCCC-CceEEEEEccccee--eeEEEecCCceeEEEECCCCCEEEEeccCc------eEEEEEEcC
Confidence 344555666999986543 56899999987654 666777888889999999999999999875 467888887
Q ss_pred CCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCC
Q 004971 595 GTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 595 ~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.|+...-..-+ ....+.+++|+||+++|..+++..+
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 77543333211 1234678999999999988887665
No 232
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.38 E-value=0.0012 Score=70.81 Aligned_cols=260 Identities=12% Similarity=0.098 Sum_probs=159.3
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
...++.|| |.+.++|+.+..|.+.-.|++.|+++|+. +.... ..-...++|.+|++.++|++.+.... ..+
T Consensus 131 Lg~~~~s~-D~~~la~s~D~~G~e~y~lr~kdL~tg~~--~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~r----p~k 201 (682)
T COG1770 131 LGAASISP-DHNLLAYSVDVLGDEQYTLRFKDLATGEE--LPDEI--TNTSGSFAWAADGKTLFYTRLDENHR----PDK 201 (682)
T ss_pred eeeeeeCC-CCceEEEEEecccccEEEEEEEecccccc--cchhh--cccccceEEecCCCeEEEEEEcCCCC----cce
Confidence 34678899 99999999999999999999999999973 32211 22355789999999999998876632 146
Q ss_pred eEEEeccCCCC--cceecccCC-CCc--eeCcCCCEEEEE----eCCcEEEEECCCCc--eEEEee-cCceeeEEcCCCC
Q 004971 402 LLLENIKSPLP--DISLFRFDG-SFP--SFSPKGDRIAFV----EFPGVYVVNSDGSN--RRQVYF-KNAFSTVWDPVRE 469 (721)
Q Consensus 402 l~~~~~~~~~~--~~~~~~~~~-~~~--~~SpDG~~la~~----~~~~l~v~d~~~g~--~~~l~~-~~~~~~~~spdg~ 469 (721)
++...+.++.. .+.-...+. .++ .-+.+.++|+.. ..+++++++.+... ++.+.. .....+....-|.
T Consensus 202 v~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d 281 (682)
T COG1770 202 VWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGD 281 (682)
T ss_pred EEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCc
Confidence 77777776422 211111111 111 224555666655 25678888876544 444442 2233344445577
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
++++.++. ...+..|+....... ....+.+..+.....--.++-=.++|+......+-..|++++..+++.
T Consensus 282 ~f~i~sN~-----~gknf~l~~ap~~~~--~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~-- 352 (682)
T COG1770 282 RFYILSNA-----DGKNFKLVRAPVSAD--KSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEE-- 352 (682)
T ss_pred EEEEEecC-----CCcceEEEEccCCCC--hhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCce--
Confidence 77777752 235677777665110 113344445543444445666678898888777888999999988873
Q ss_pred eEECcCCC-cCceeeEEc--cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 550 LHRLTEGP-WSDTMCNWS--PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 550 ~~~l~~~~-~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
..+.-.. .....+..+ ++...|-+..... ....++|-+|+.+++.+.+..
T Consensus 353 -~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~---ttP~~~~~~dm~t~er~~Lkq 405 (682)
T COG1770 353 -RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSM---TTPATLFDYDMATGERTLLKQ 405 (682)
T ss_pred -eeEEecchhhhccccCCCCCCCccEEEEeecc---cccceeEEeeccCCcEEEEEe
Confidence 3333221 111222222 3445555554432 245699999999998776654
No 233
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.34 E-value=0.00013 Score=72.35 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=109.3
Q ss_pred CCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
...+++|+||+.+|++. ...|++....+.....+.......+.|+++|...++.. ......++.....+
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~-------~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD-------GSGGVRVVRDSASG 98 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc-------CCCceEEEEecCCC
Confidence 45689999999999985 45677776554444444556788999999966555543 23334444322222
Q ss_pred CCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECC---CCccc---ceEECc-CCCcCceeeEEcc
Q 004971 497 VDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE---GGEGY---GLHRLT-EGPWSDTMCNWSP 567 (721)
Q Consensus 497 ~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~---~g~~~---~~~~l~-~~~~~~~~~~~Sp 567 (721)
. .....+.... ..+..+.+||||.++++.....+..+|++--+. .|... ....+. .....+..++|.+
T Consensus 99 ~---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 T---GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred c---ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 1 1222333322 267789999999999999987777888886543 23110 111222 2233457899999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
+++.++...... . .....+.++++....+.. ........+...+...++.
T Consensus 176 ~~~L~V~~~~~~----~-~~~~~v~~dG~~~~~l~~--~~~~~~v~a~~~~~~~~~~ 225 (253)
T PF10647_consen 176 DSTLVVLGRSAG----G-PVVRLVSVDGGPSTPLPS--VNLGVPVVAVAASPSTVYV 225 (253)
T ss_pred CCEEEEEeCCCC----C-ceeEEEEccCCcccccCC--CCCCcceEEeeCCCcEEEE
Confidence 998666655543 2 122247777777666632 2223334444444444433
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=0.00027 Score=68.21 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=111.4
Q ss_pred CcEEEEECCCC-ceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971 439 PGVYVVNSDGS-NRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516 (721)
Q Consensus 439 ~~l~v~d~~~g-~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 516 (721)
..|.+||=.-. ....+. ...+..+.+++| +|+++. ..++.||....+-. ..+.+........-.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl--------~~~I~VytF~~n~k----~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL--------ENKIYVYTFPDNPK----LLHVIETRSNPKGLC 140 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe--------cCeEEEEEcCCChh----heeeeecccCCCceE
Confidence 45889983222 223333 667778888665 566654 36677777664321 333333322222234
Q ss_pred EEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 517 SVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 517 ~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+..|- ...|||-+.. .++|.+.|+...+...+..+..+...+.-++.+-+|..||.++..+ .-|.++|..
T Consensus 141 ~~~~~~~k~~LafPg~k--~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------TLIRIFdt~ 212 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFK--TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------TLIRIFDTE 212 (346)
T ss_pred eecCCCCceEEEcCCCc--cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------EEEEEEEcC
Confidence 55553 3455555544 4678888987655322466777888888999999999999998875 468899999
Q ss_pred CCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCC
Q 004971 595 GTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 595 ~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+|+..+-...+ ....+..++||||+.+|+.+++.++
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 88766544332 2345678999999999999888775
No 235
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.31 E-value=6.9e-06 Score=81.35 Aligned_cols=153 Identities=13% Similarity=0.156 Sum_probs=108.4
Q ss_pred ceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cc---eEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 459 AFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGV-SA---VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 459 ~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
+..+.|.+++. +++... .+.+++||.+.....++. .. ...|+.+...+..+.|+|+|..|+...+
T Consensus 16 v~s~dfq~n~~~~laT~G-------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D--- 85 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAG-------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD--- 85 (434)
T ss_pred eEEEEeccCcccceeccc-------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC---
Confidence 34444555544 444442 578899999886543221 12 2345666778888999999999998776
Q ss_pred ceeEEEEECC--------C-----Ccc-cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 534 YKNLYIMDAE--------G-----GEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 534 ~~~l~~~d~~--------~-----g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
...+++|-.. + .+. ...+.+..+...+..++|+||+..+++++.+. .+++||+..|...
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-------s~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-------SVRLWDVHAGQLL 158 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-------eEEEEEeccceeE
Confidence 6677777654 2 111 11222334455678899999999999999875 8999999999887
Q ss_pred EeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..... +...+..++|.|-+++++..+.+.
T Consensus 159 ~~~~d-h~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 159 AILDD-HEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeccc-cccccceeecchhhhhhhhhccCc
Confidence 77654 778889999999999998877655
No 236
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.31 E-value=5.2e-05 Score=73.08 Aligned_cols=242 Identities=13% Similarity=0.176 Sum_probs=148.8
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
+..-+|++ |+..++... .+..+.+|...... .+....+..|...+..+.|+|...+|+....+.+.
T Consensus 13 itchAwn~-drt~iAv~~-----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna------- 79 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVSP-----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA------- 79 (361)
T ss_pred eeeeeecC-CCceEEecc-----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-------
Confidence 45567899 999888843 33457888777666 55666677788888899999999999998777662
Q ss_pred eeEEEec-cCC--CCcceec--ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce----EEEe---ecCceeeEEcCC
Q 004971 401 QLLLENI-KSP--LPDISLF--RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR----RQVY---FKNAFSTVWDPV 467 (721)
Q Consensus 401 ~l~~~~~-~~~--~~~~~~~--~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~----~~l~---~~~~~~~~~spd 467 (721)
|++.. .++ ...+.+. ......+.|||.+..+|+.+ ...|-++-.+..+- ++|. ..-+..+.|.|+
T Consensus 80 --yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 80 --YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred --cccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 33332 121 1122222 22345689999999998884 45566666655442 1222 245678999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCC------Cc------cc-eEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVD------GV------SA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~------~~------~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~ 534 (721)
+-.|+..+ .+.+.+++..-..+-+ .. +. ........+.+....|||+|..|++... +
T Consensus 158 nVLlaaGs-------~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---d 227 (361)
T KOG1523|consen 158 NVLLAAGS-------TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---D 227 (361)
T ss_pred cceecccc-------cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---C
Confidence 99988876 4566666654332210 00 00 0111122356677899999999999998 7
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
..+.+.|..+...+ +..+.........+.|-.+.. ++.+..+ ....+|..+-++
T Consensus 228 s~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~-vv~ag~~-----c~P~lf~~~~~~ 281 (361)
T KOG1523|consen 228 STVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS-VVAAGYD-----CGPVLFVTDEEG 281 (361)
T ss_pred CceEEeecCCCchh-ccchhhccCCceeeEeecCCc-eeecCCC-----CCceEEEecccc
Confidence 78999998876522 222222223334566655544 3333332 223677766543
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.31 E-value=2.5e-05 Score=75.21 Aligned_cols=205 Identities=14% Similarity=0.172 Sum_probs=130.9
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
...+|++|++.+|... ..++.+|...+.. .+... +..+..+.|+|...+|+..+ .+.+.++|....
T Consensus 14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drnayVw~~~~ 86 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRNAYVWTQPS 86 (361)
T ss_pred eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCCccccccCC
Confidence 3469999999999984 5688888887776 33222 45677899999999999886 567788887743
Q ss_pred cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECcC-CCcCceeeEEccCCCEE
Q 004971 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLTE-GPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~-~~~~~~~~~~SpDG~~l 572 (721)
++. ....-.|.........+.|+|.+.++++.+. ...|-++-.+..+- -.-+.+-. ....+..+.|.|++-.|
T Consensus 87 ~~~--WkptlvLlRiNrAAt~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 87 GGT--WKPTLVLLRINRAATCVKWSPKENKFAVGSG---ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred CCe--eccceeEEEeccceeeEeecCcCceEEeccC---ccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 331 1222334444456678899999999998875 34444443332210 00011111 12346789999999888
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEE----------eeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRK----------LIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH 640 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~----------l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 640 (721)
+.++.+.. -.-...|+-+++.+.... +..+ ...+.+..+.|||+|..|+|...+..
T Consensus 162 aaGs~D~k--~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~---------- 229 (361)
T KOG1523|consen 162 AAGSTDGK--CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST---------- 229 (361)
T ss_pred cccccCcc--eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc----------
Confidence 88776631 011234555555432100 0000 14567788999999999999998875
Q ss_pred CCCCCccEEEEEcCCCC
Q 004971 641 QYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 641 ~~~~~~~l~~~d~~~~~ 657 (721)
+++.|..+..
T Consensus 230 -------v~~~da~~p~ 239 (361)
T KOG1523|consen 230 -------VSFVDAAGPS 239 (361)
T ss_pred -------eEEeecCCCc
Confidence 7777777664
No 238
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.30 E-value=5.2e-05 Score=79.45 Aligned_cols=268 Identities=12% Similarity=0.091 Sum_probs=153.7
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCce----EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKF----IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 406 (721)
+-++|++..+..| .|.++|...-.. .++..+..|...+.+..|-| |+..++ +..++ ..+..++
T Consensus 62 n~eHiLavadE~G----~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lV-sasGD-------sT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDG----GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLV-SASGD-------STIRPWD 128 (720)
T ss_pred CccceEEEecCCC----ceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEE-EccCC-------ceeeeee
Confidence 5577777655544 388888765432 23455566777888999999 544433 33333 3345555
Q ss_pred ccCCC-Cc---ceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc---------------------eEEEe----
Q 004971 407 IKSPL-PD---ISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN---------------------RRQVY---- 455 (721)
Q Consensus 407 ~~~~~-~~---~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~---------------------~~~l~---- 455 (721)
+.+.. .. ...........+|+|+..-+... .++.+.+||+.-.. .+++.
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 54431 11 11223345567899988765555 37888888863111 00111
Q ss_pred -----ecCcee---eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE---EcccCC---CCCcceEEccC
Q 004971 456 -----FKNAFS---TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR---RLTTNG---KNNAFPSVSPD 521 (721)
Q Consensus 456 -----~~~~~~---~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~l~~~~---~~~~~~~~SpD 521 (721)
...+.. ..+..|...|+.++ ..++.+++|++......-..+.. .+..+. .....+....-
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSag------a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAG------AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeecc------CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 112233 56677888888776 24789999999865420000111 111111 12223444455
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
|.+|+.... +..||.|++.+-... +..+..+.. ....-..|||+.+|+.++.+. +.|+|.++.-+.
T Consensus 283 Gt~L~AsCt---D~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~-------~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 283 GTYLFASCT---DNSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE-------QAYIWVVSSPEA 351 (720)
T ss_pred CCeEEEEec---CCcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEeccCCCc-------ceeeeeecCccC
Confidence 689988887 789999999865521 222222211 112235699999999998886 889998877654
Q ss_pred EEeeecCCCCCcCCeEECCC--CCEEEEEEecC
Q 004971 599 RKLIQSGSAGRANHPYFSPD--GKSIVFTSDYG 629 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpD--G~~l~~~~~~~ 629 (721)
-.....++...+..+.|.|. +. ++..+.+.
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~ 383 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATTP-VATCSDDF 383 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCCC-ceeeccCc
Confidence 33333346666777888654 44 34445444
No 239
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=4.8e-05 Score=81.49 Aligned_cols=176 Identities=9% Similarity=0.063 Sum_probs=123.9
Q ss_pred CceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 423 FPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 423 ~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
.+.|++-.-.|+.. .++.|..||+........+ ...++++.|+|--...+++. .+.+.+.+|++.....
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~------~dsG~lqlWDlRqp~r 211 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI------HDSGYLQLWDLRQPDR 211 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe------cCCceEEEeeccCchh
Confidence 46777766666665 3788999999877655555 56788999999655444444 3678999999987654
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
...+++.|.+.+..+.|+|++.+||..+. +..+.+||..+++......+- ....+..+.|-|+-++.+.+..
T Consensus 212 ----~~~k~~AH~GpV~c~nwhPnr~~lATGGR---DK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 212 ----CEKKLTAHNGPVLCLNWHPNREWLATGGR---DKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred ----HHHHhhcccCceEEEeecCCCceeeecCC---CccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhh
Confidence 66788889899999999999999998874 778999999877643333332 2344678999999765444333
Q ss_pred cCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECC
Q 004971 578 RDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~Sp 617 (721)
-. ....|++||+.-.= +..... .|...+..++|..
T Consensus 284 mv----~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 284 MV----VDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWDS 319 (839)
T ss_pred cc----ccceEEEEeeccccccceeee-ccCccccceeccC
Confidence 21 44689999996542 222222 2666777888865
No 240
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.26 E-value=0.00015 Score=68.90 Aligned_cols=201 Identities=9% Similarity=0.094 Sum_probs=128.8
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCC--CeeeEEEEECCCCce-------EEeeccc-CCCCcccCcEEcCCCCEEEEE
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTS--SYRHIELFDLVKNKF-------IELTRFV-SPKTHHLNPFISPDSSRVGYH 387 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~--~~~~l~l~dl~tg~~-------~~l~~~~-~~~~~~~~~~~Spdg~~l~~~ 387 (721)
+...+..++-+|.|.+.++...++.+. ....+.+|.+..... ..+..+. ..-+.+.++.|-|++.+++..
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 345677888888444544444443221 123466777653211 1111110 112356788999999999876
Q ss_pred EeeCCCCCCCCcceeEEEeccCCCCcceecc--------cCCCCceeCc--CCCEEEEEeCCcEEEEECCCCce-EEEe-
Q 004971 388 KCRGGSTREDGNNQLLLENIKSPLPDISLFR--------FDGSFPSFSP--KGDRIAFVEFPGVYVVNSDGSNR-RQVY- 455 (721)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~Sp--DG~~la~~~~~~l~v~d~~~g~~-~~l~- 455 (721)
.. ..|.++++....+.+.... ..-...+||| ||..++..++..++-||+.+-.. ..|.
T Consensus 142 ~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 142 DD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred cc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 52 3355666554432111111 1112358887 89999999999999999986543 2232
Q ss_pred --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
...+.++.|.|+-+.+++++ .+++.++||+....+. .+..+..+...+..+.|.|--..|+.....
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~------gDdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~~hdqLiLs~~S-- 279 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTC------GDDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNPEHDQLILSGGS-- 279 (370)
T ss_pred hhcceeeeccCCCCceEEEEEc------CCCccEEEEeccCCCc----cccccCCCceEEEEEEecCccceEEEecCC--
Confidence 34578999999999999887 4789999999877654 677788888888899999988888877654
Q ss_pred ceeEEEE
Q 004971 534 YKNLYIM 540 (721)
Q Consensus 534 ~~~l~~~ 540 (721)
+..+.++
T Consensus 280 Ds~V~Ls 286 (370)
T KOG1007|consen 280 DSAVNLS 286 (370)
T ss_pred CceeEEE
Confidence 3344444
No 241
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.8e-06 Score=91.35 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=128.7
Q ss_pred cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 419 FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 419 ~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
.....+.|+++...|+... .+.|.+||+..++ .+.|+ ...+..+.|+|-|.+.+-.+ .+.+..+|++..
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS-------tdtd~~iwD~Rk 143 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS-------TDTDLKIWDIRK 143 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc-------ccccceehhhhc
Confidence 3345678888776666664 6689999998766 44555 44667888999998885543 578889998876
Q ss_pred cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
.+ .......+...+..++|+|||++++...+ +..+.+||+..|+. +.....+...+..+.|.|..-.++-
T Consensus 144 ~G-----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~e---d~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 144 KG-----CSHTYKSHTRVVDVLRLSPDGRWVASGGE---DNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred cC-----ceeeecCCcceeEEEeecCCCceeeccCC---cceeeeeccccccc--ccccccccccccccccCchhhhhcc
Confidence 54 55555556666777899999999997776 78899999988874 4455556666677778887655555
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
++.+ ..+..||+.+-+..--... ....+....|+|||+.++...
T Consensus 214 Gs~d-------~tv~f~dletfe~I~s~~~-~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 214 GSSD-------RTVRFWDLETFEVISSGKP-ETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred CCCC-------ceeeeeccceeEEeeccCC-ccCCceeeeecCCceeeecCc
Confidence 5555 3899999876332211111 234567889999999776543
No 242
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.26 E-value=5e-05 Score=74.65 Aligned_cols=163 Identities=11% Similarity=0.089 Sum_probs=107.3
Q ss_pred cCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971 457 KNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534 (721)
Q Consensus 457 ~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~ 534 (721)
+..+.+.||| .|+.+ . . .-...+++|.....+- ......++.+...+..++|||..+-+++...- +
T Consensus 212 ~EGy~LdWSp~~~g~Ll-s-G------Dc~~~I~lw~~~~g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~--D 279 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRLL-S-G------DCVKGIHLWEPSTGSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC--D 279 (440)
T ss_pred ccceeeecccccccccc-c-C------ccccceEeeeeccCce--eecCccccccccchhhhccCCccCceEEeeec--C
Confidence 4456789998 23222 1 1 1245677777766332 01223455566778889999998877776543 5
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC---CceEEeeecCCCCCcC
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLRKLIQSGSAGRAN 611 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~~~~~~~ 611 (721)
..|.+||+..+..+.......+...++-++|+-+-..|+++.+++ .+.+||+.. +++...... |...+.
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG-------t~~iwDLR~~~~~~pVA~fk~-Hk~pIt 351 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG-------TLSIWDLRQFKSGQPVATFKY-HKAPIT 351 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc-------eEEEEEhhhccCCCcceeEEe-ccCCee
Confidence 689999998874322222245667888999998888777777765 899999854 344444443 778899
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
++.|+|....++.++..+. +|-+||+.-
T Consensus 352 sieW~p~e~s~iaasg~D~----------------QitiWDlsv 379 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDN----------------QITIWDLSV 379 (440)
T ss_pred EEEeccccCceEEeccCCC----------------cEEEEEeec
Confidence 9999998766554444332 588888754
No 243
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.24 E-value=5.6e-05 Score=72.41 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=116.0
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
...|-..|+.++..+ +....+||+++|++..+. +.......-.|..+.++..+ .+...++|++...-
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS-------rDtTFRLWDFReaI-- 347 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS-------RDTTFRLWDFREAI-- 347 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec-------cCceeEeccchhhc--
Confidence 346666788887775 677889999999977665 33445556666665555443 57889999987432
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
..+..+..+...+....|.-|.+ ++..++ +..+.+||+.+-.. .+..+-. ...++.++.|.-++.|++-.+.
T Consensus 348 --~sV~VFQGHtdtVTS~vF~~dd~-vVSgSD---DrTvKvWdLrNMRs-plATIRt-dS~~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 348 --QSVAVFQGHTDTVTSVVFNTDDR-VVSGSD---DRTVKVWDLRNMRS-PLATIRT-DSPANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred --ceeeeecccccceeEEEEecCCc-eeecCC---CceEEEeeeccccC-cceeeec-CCccceeEeecCCceEEeccCC
Confidence 14455556666777888887755 666665 78999999986542 1333332 2345778888777777766654
Q ss_pred CCCCCCceeEEEEecCCCceEEeeec---CCCCCcCCeEECCC
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQS---GSAGRANHPYFSPD 618 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~~~SpD 618 (721)
.+|.++|+.+..+-++... +|...+...+|+.+
T Consensus 420 -------RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 420 -------RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred -------ceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 3899999999877666522 24556677778755
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.00019 Score=74.45 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=158.4
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCc-ccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH-HLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~-~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
.......+..|| ||+|+... |-...+|.+||+..-..+- ... -... +.-.-+|-|=..+++...+..+.
T Consensus 50 ~p~ast~ik~s~-DGqY~lAt----G~YKP~ikvydlanLSLKF-ERh--lDae~V~feiLsDD~SK~v~L~~DR~Ie-- 119 (703)
T KOG2321|consen 50 MPTASTRIKVSP-DGQYLLAT----GTYKPQIKVYDLANLSLKF-ERH--LDAEVVDFEILSDDYSKSVFLQNDRTIE-- 119 (703)
T ss_pred CccccceeEecC-CCcEEEEe----cccCCceEEEEcccceeee-eec--ccccceeEEEeccchhhheEeecCceee--
Confidence 344456788999 99998764 3456679999997543211 111 1122 22233455555566655444321
Q ss_pred CCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-EEEe--ecCceeeEEcCCCCeEE
Q 004971 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPVREAVV 472 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spdg~~la 472 (721)
+.. ..+...-+-.+..++.+.++.-..-|+++ ....||.++++.|.. ..+. .+.+..+..++-...|+
T Consensus 120 -------fHa-k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 120 -------FHA-KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred -------ehh-hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 110 11111111122234444443223234444 678999999998873 3333 46777888888888888
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCCCccce---EEcccCC-----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVDGVSAV---RRLTTNG-----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
+.+ .++.+..|+...... .+.+ ..+..+. ..+..+.|+-||-.+++... ...++++|+.+
T Consensus 192 ~Gt-------~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iyDLRa 259 (703)
T KOG2321|consen 192 CGT-------EDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIYDLRA 259 (703)
T ss_pred ecc-------cCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEEEccc
Confidence 775 467888887765432 0011 1122222 23677899999999999887 78999999998
Q ss_pred CcccceEECcCC--CcCceeeEEccC--CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 545 GEGYGLHRLTEG--PWSDTMCNWSPD--GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 545 g~~~~~~~l~~~--~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
.++ ..+..+ ...+..+.|-+. +..|+..... .+.+||-.+|+.-.... ....+..+++-|++-
T Consensus 260 ~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~--------~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 260 SKP---LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR--------ILKIWDECTGKPMASIE--PTSDLNDFCFVPGSG 326 (703)
T ss_pred CCc---eeecccCCccceeeecccccCCCceEEecchH--------HhhhcccccCCceeecc--ccCCcCceeeecCCc
Confidence 773 333332 334566778554 3444444333 78999999998766554 334588899999887
Q ss_pred EEEEEEecC
Q 004971 621 SIVFTSDYG 629 (721)
Q Consensus 621 ~l~~~~~~~ 629 (721)
.+++ ++++
T Consensus 327 m~f~-Ane~ 334 (703)
T KOG2321|consen 327 MFFT-ANES 334 (703)
T ss_pred eEEE-ecCC
Confidence 6554 4443
No 245
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.22 E-value=0.00027 Score=74.98 Aligned_cols=265 Identities=12% Similarity=0.071 Sum_probs=152.2
Q ss_pred EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccC-cEEcC-CCCEEEEEEeeC
Q 004971 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN-PFISP-DSSRVGYHKCRG 391 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~-~~~Sp-dg~~l~~~~~~~ 391 (721)
.+..|..++..+++.+ +..++-. +.++.+.+|+...++....+...++.+.+.. ..+-+ |+.+|++.+.+.
T Consensus 9 ~l~gH~~DVr~v~~~~--~~~i~s~-----sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD--GVCIISG-----SRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred EeccCccchheeEecC--CeEEeec-----CCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 3445555556665543 3344432 2334488998876665554444444333322 33332 344455544444
Q ss_pred CCCCCCCcceeEEEeccCCCCcceecccCCCCceeC--cCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcC
Q 004971 392 GSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS--PKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDP 466 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~S--pDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp 466 (721)
. +.+..+.+...-.++......-.+.| .++. ++..+ +..+.+|....-... +. ...+..+..-|
T Consensus 82 ~---------i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 82 T---------IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLP 150 (745)
T ss_pred e---------EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecC
Confidence 3 34444443322222222222223333 3443 33333 677778865322111 11 33455666677
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
++ .++..+ .+..+++|.-+. ..+.+..|...+.++++-|++.+|-+ ++ +..|.+|++++..
T Consensus 151 e~-~~vTgs-------aDKtIklWk~~~-------~l~tf~gHtD~VRgL~vl~~~~flSc-sN---Dg~Ir~w~~~ge~ 211 (745)
T KOG0301|consen 151 EN-TYVTGS-------ADKTIKLWKGGT-------LLKTFSGHTDCVRGLAVLDDSHFLSC-SN---DGSIRLWDLDGEV 211 (745)
T ss_pred CC-cEEecc-------CcceeeeccCCc-------hhhhhccchhheeeeEEecCCCeEee-cC---CceEEEEeccCce
Confidence 77 333332 578899987532 66777788888899999999876554 44 7899999996444
Q ss_pred ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
+.+...+...+..++...+++.|+.++.+. ++.+|+.+ ++.+.... ....++++.+-++|. |++.+
T Consensus 212 ---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr-------tlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 212 ---LLEMHGHTNFVYSISMALSDGLIVSTGEDR-------TLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred ---eeeeeccceEEEEEEecCCCCeEEEecCCc-------eEEEeecC--ceEEEEec-CccceEEEEEeeCCC-EEEec
Confidence 777777776677788778888888888775 89999865 55555442 233566777766776 34444
Q ss_pred ecC
Q 004971 627 DYG 629 (721)
Q Consensus 627 ~~~ 629 (721)
.++
T Consensus 278 SDG 280 (745)
T KOG0301|consen 278 SDG 280 (745)
T ss_pred cCc
Confidence 444
No 246
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.20 E-value=0.00068 Score=64.59 Aligned_cols=215 Identities=14% Similarity=0.169 Sum_probs=135.3
Q ss_pred eeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEeeCC-CCCCCCcceeEEEeccCCCCc-----c---e
Q 004971 346 YRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKCRGG-STREDGNNQLLLENIKSPLPD-----I---S 415 (721)
Q Consensus 346 ~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-----~---~ 415 (721)
+.++.+++++.+....+. .+..+.+.++.++-+|-.++|+.+..... ..+......|| .+..+... + .
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw--~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIW--QIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEE--ecccccCccccchhhHhh
Confidence 355777776655433332 23445677888889998877766544422 11111112333 33222111 1 1
Q ss_pred ecc----cCCCCceeCcCCCEEEEEeCCcEEEEECCCCce--EEEe-e------cCceeeEEcC--CCCeEEEEecCCCC
Q 004971 416 LFR----FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR--RQVY-F------KNAFSTVWDP--VREAVVYTSGGPEF 480 (721)
Q Consensus 416 ~~~----~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~--~~l~-~------~~~~~~~~sp--dg~~la~~~~~~~~ 480 (721)
..+ +....+.|.|++.+++...+..|.+|+++.+.. ..+. . ...+.-+||| ||..++.++
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~----- 191 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS----- 191 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-----
Confidence 111 122457899999999999999999999986654 2222 1 1334678998 899998875
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~ 559 (721)
+.++..|++.... +.-.+. .+...+..+.|.|+-+.+++.... +..|.+||...-+ ..+..+..+...
T Consensus 192 ---d~tl~~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD--dgyvriWD~R~tk-~pv~el~~HsHW 260 (370)
T KOG1007|consen 192 ---DSTLQFWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGD--DGYVRIWDTRKTK-FPVQELPGHSHW 260 (370)
T ss_pred ---CCcEEEEEccchh-----hhcchhhhhcceeeeccCCCCceEEEEEcCC--CccEEEEeccCCC-ccccccCCCceE
Confidence 5778888877543 222222 244567888999998888877665 5578899987543 236677777777
Q ss_pred ceeeEEccCCCEEEEEEcc
Q 004971 560 DTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~ 578 (721)
+..+.|.|-=.+|+.+...
T Consensus 261 vW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred EEEEEecCccceEEEecCC
Confidence 8889999877677666554
No 247
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.19 E-value=0.0016 Score=73.57 Aligned_cols=286 Identities=21% Similarity=0.211 Sum_probs=157.2
Q ss_pred ccCceeecCCCCEEEEEEecC----CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRP----TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~----g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
+..+.++| +++.+++..... ......+++.|... ... .........+.|+|||+.+++....+...
T Consensus 15 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~----~~~~~~~~~~~~spdg~~~~~~~~~~~~~--- 84 (620)
T COG1506 15 VSDPRVSP-PGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRL----LTFGGGVSELRWSPDGSVLAFVSTDGGRV--- 84 (620)
T ss_pred ccCcccCC-CCceeEEeeccccccccccccceEEEeccc--ccc----cccCCcccccccCCCCCEEEEEeccCCCc---
Confidence 34567788 888888876531 12334577766544 111 22355667889999999999987343321
Q ss_pred CcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-------eC---------------------CcEEEEECCCC
Q 004971 398 GNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-------EF---------------------PGVYVVNSDGS 449 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-------~~---------------------~~l~v~d~~~g 449 (721)
.++++.+.. + .+...........|+|+|+.+++. .+ ..++++|..+
T Consensus 85 --~~l~l~~~~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~- 158 (620)
T COG1506 85 --AQLYLVDVG-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES- 158 (620)
T ss_pred --ceEEEEecC-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-
Confidence 567777655 2 333334456668999999999884 01 1233333322
Q ss_pred ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE-ccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971 450 NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN-VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV 526 (721)
Q Consensus 450 ~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~ 526 (721)
....+. ...+..+.+.++++.++....... .+..+.-+.+. ... ..+..++........+.|.+||+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~gk~~~ 231 (620)
T COG1506 159 KLIKLGLGNLDVVSFATDGDGRLVASIRLDDD---ADPWVTNLYVLIEGN----GELESLTPGEGSISKLAFDADGKSIA 231 (620)
T ss_pred ccccccCCCCceeeeeeCCCCceeEEeeeccc---cCCceEeeEEEecCC----CceEEEcCCCceeeeeeeCCCCCeeE
Confidence 111111 233445666666777776653211 11222222221 112 26666666666788899999999888
Q ss_pred EEEeeCC-----ceeEEEEECCCCcccceEE-CcCCC--cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 527 FRSTRTG-----YKNLYIMDAEGGEGYGLHR-LTEGP--WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 527 ~~s~~~g-----~~~l~~~d~~~g~~~~~~~-l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+...... ...+++++.+.++ ... +.... .......+.-++..+++...+. .+...++..+..++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~l~~~~~~~~~~ 305 (620)
T COG1506 232 LLGTESDRGLAEGDFILLLDGELGE---VDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG---GGSSPLFRVDDLGGGV 305 (620)
T ss_pred EeccCCccCccccceEEEEeccccc---cceeeccCCcccCcHHhccccCCCcEEEEEecC---CCceEEEEEeccCCce
Confidence 8876543 2356666644444 222 11111 1112223334566666666652 1444555555434332
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 653 (721)
..+. ........|+.+|+.+++.......+ +++|+++.
T Consensus 306 ~~~~----~~~~~v~~f~~~~~~~~~~~s~~~~p-------------~~i~~~~~ 343 (620)
T COG1506 306 EGLS----GDDGGVPGFDVDGRKLALAYSSPTEP-------------PEIYLYDR 343 (620)
T ss_pred eeec----CCCceEEEEeeCCCEEEEEecCCCCc-------------cceEEEcC
Confidence 2222 12233455666999998877665543 57999987
No 248
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=0.00042 Score=66.06 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=131.8
Q ss_pred CCCceeCcCCC-EEEEEe--CCcEEEEECCCCce-EEEe--ecC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSPKGD-RIAFVE--FPGVYVVNSDGSNR-RQVY--FKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~SpDG~-~la~~~--~~~l~v~d~~~g~~-~~l~--~~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...++++|--. .++|.. ..-.+++|..++.. +.+. .+. -..-.|||||++||.+.++ +....+-+-||+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd--fd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND--FDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC--CCCCCceEEEEec
Confidence 34467777654 456664 34567788887764 3333 222 2356899999999987643 4556677888888
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee------CC---------ceeEEEEECCCCcccceEECc--C
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------TG---------YKNLYIMDAEGGEGYGLHRLT--E 555 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~------~g---------~~~l~~~d~~~g~~~~~~~l~--~ 555 (721)
...-. .+-.+..++-....+.|.+||+.|+..... .+ ...|.++|..+|+.-+...|. .
T Consensus 148 r~~fq----rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 148 REGFQ----RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred ccccc----eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 74322 344455555556778999999999987641 11 347888887788752222333 2
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
....+.++...+||+.++-+...+.. +...-|.-.-..+ +..+..... ....+.+++..-+-.+++.++.++
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~-~d~ppLvg~~~~g-~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G 301 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPR-NDLPPLVGHFRKG-EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG 301 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCC-ccCCcceeeccCC-CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence 23456788999999855544444321 1222233233333 333322211 123456677777777777777666
Q ss_pred CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+ ...+||+++|.+.....
T Consensus 302 N----------------~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 302 N----------------RAVIWDAATGAVVSEAA 319 (366)
T ss_pred C----------------eEEEEEcCCCcEEeccc
Confidence 4 38899999998765543
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.0002 Score=74.27 Aligned_cols=258 Identities=9% Similarity=0.019 Sum_probs=151.0
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eeccc-CCCCceeCcCCCEEEEEeCCcEEEEEC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRF-DGSFPSFSPKGDRIAFVEFPGVYVVNS 446 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~SpDG~~la~~~~~~l~v~d~ 446 (721)
......+..||||++++.+..-. ..|.++++..-...+ ..... .+.+.-+|.|=+.+++.....-.-+..
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YK--------P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYK--------PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred ccccceeEecCCCcEEEEecccC--------CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 44456688999999998754333 345555554321111 11111 122334555655666653332222333
Q ss_pred CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971 447 DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525 (721)
Q Consensus 447 ~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l 525 (721)
..|....+. +....++.++.-..-|+++. ....||++++..+ .-+..+....+....+..++-...|
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~g---------sg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVG---------SGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEHGLL 190 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEee---------cCcceEEEEcccc---ccccccccccccceeeeecCccceE
Confidence 344332222 33445566655444555554 3467889988764 2344444444567778888888888
Q ss_pred EEEEeeCCceeEEEEECCCCcccceEECc------CCCc-----CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLT------EGPW-----SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~------~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
++... +..+-.||....+. +..|. ..++ .++.+.|+-||-.++++...+ .+|+||+.
T Consensus 191 a~Gt~---~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-------~v~iyDLR 258 (703)
T KOG2321|consen 191 ACGTE---DGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-------SVLIYDLR 258 (703)
T ss_pred Eeccc---CceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------cEEEEEcc
Confidence 88876 67888899877654 22221 2222 268899999999999998876 89999999
Q ss_pred CCceEEeeecCCCCCcCCeEECCC--CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCce
Q 004971 595 GTGLRKLIQSGSAGRANHPYFSPD--GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672 (721)
Q Consensus 595 ~~~~~~l~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~ 672 (721)
+.++..+-.....-.+..+.|-+. +..|+.. +.. -+.+||..+|+.-..........+.|
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~----------------~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKR----------------ILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEec--chH----------------HhhhcccccCCceeeccccCCcCcee
Confidence 887665543222233456677554 3444433 322 27788987776543333344467778
Q ss_pred ecCC
Q 004971 673 WGPR 676 (721)
Q Consensus 673 ~sp~ 676 (721)
+-|+
T Consensus 321 ~~p~ 324 (703)
T KOG2321|consen 321 FVPG 324 (703)
T ss_pred eecC
Confidence 8775
No 250
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.11 E-value=0.0001 Score=72.53 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=108.1
Q ss_pred cCCCCceeCc--CCCEEEEE-eCCcEEEEECCCCceEE----Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971 419 FDGSFPSFSP--KGDRIAFV-EFPGVYVVNSDGSNRRQ----VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 419 ~~~~~~~~Sp--DG~~la~~-~~~~l~v~d~~~g~~~~----l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i 489 (721)
..+..+.||| .|+ |+.. ....|++|...+|..+. +. ...+..+.|||.-+.+++.+ .-++.++|
T Consensus 212 ~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc------S~DgsIrI 284 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC------SCDGSIRI 284 (440)
T ss_pred ccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee------ecCceEEE
Confidence 3466789998 232 3332 36789999988776432 22 45677899999998888877 36899999
Q ss_pred EEEEccCCCCccceEEc-ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECcCCCcCceeeEEcc
Q 004971 490 ISINVDDVDGVSAVRRL-TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 490 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~~~Sp 567 (721)
|++..... +...+ ..+...+..+.|+.+-..|++..+ +..+.+||+..-+. ..+..+..+...++.+.|+|
T Consensus 285 WDiRs~~~----~~~~~~kAh~sDVNVISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 285 WDIRSGPK----KAAVSTKAHNSDVNVISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred EEecCCCc----cceeEeeccCCceeeEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 99987642 22222 345566777899988887777776 77899999875332 12556667778889999999
Q ss_pred CCCEE-EEEEccCCCCCCceeEEEEecCC
Q 004971 568 DGEWI-AFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 568 DG~~l-~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
....+ +.++.+. +|-+||+.-
T Consensus 358 ~e~s~iaasg~D~-------QitiWDlsv 379 (440)
T KOG0302|consen 358 HEDSVIAASGEDN-------QITIWDLSV 379 (440)
T ss_pred ccCceEEeccCCC-------cEEEEEeec
Confidence 76544 4444443 899999854
No 251
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.11 E-value=0.016 Score=62.70 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=150.8
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe------CCcEEEEE
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVN 445 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~------~~~l~v~d 445 (721)
...+..|||.+.++++.+..+... ..+.+.++.++..............+|.+|++.+.|+. ...|+...
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~----y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQ----YTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccE----EEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 567889999999999776655321 45677777776443333333355679999999999983 24577777
Q ss_pred CCC--CceEEEee--cC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971 446 SDG--SNRRQVYF--KN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519 (721)
Q Consensus 446 ~~~--g~~~~l~~--~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 519 (721)
+.+ ..-+.|.. .. -..+.-+...++|++... +..+.+++.++.+... ...+.+.... ........
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~------~~~tsE~~ll~a~~p~--~~p~vv~pr~-~g~eY~~e 277 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLG------SHITSEVRLLDADDPE--AEPKVVLPRE-NGVEYSVE 277 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcC------CCcceeEEEEecCCCC--CceEEEEEcC-CCcEEeee
Confidence 766 44455551 11 223445667777777652 3344556666554421 1334333322 11112222
Q ss_pred cCCCEEEEEEeeCC-ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 520 PDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 520 pDg~~l~~~s~~~g-~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
.-|.++++.++..+ +..|+...+...+ ..-+.+..+.....--.++-=.++|+....+. +-..|++++..+++.
T Consensus 278 h~~d~f~i~sN~~gknf~l~~ap~~~~~-~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~----glp~v~v~~~~~~~~ 352 (682)
T COG1770 278 HGGDRFYILSNADGKNFKLVRAPVSADK-SNWRELIPHREDVRLEGVDLFADHLVLLERQE----GLPRVVVRDRKTGEE 352 (682)
T ss_pred ecCcEEEEEecCCCcceEEEEccCCCCh-hcCeeeeccCCCceeeeeeeeccEEEEEeccc----CCceEEEEecCCCce
Confidence 34778888888776 5577766551111 11233444443334445555667888887764 667899999988877
Q ss_pred EEeeecCCCCCcCCeEECC--CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 599 RKLIQSGSAGRANHPYFSP--DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
..+... ..........++ +...|-+.-..-+. +.+++-+|+.+++.+.|.+
T Consensus 353 ~~i~f~-~~ay~~~l~~~~e~~s~~lR~~ysS~tt-------------P~~~~~~dm~t~er~~Lkq 405 (682)
T COG1770 353 RGIAFD-DEAYSAGLSGNPEFDSDRLRYSYSSMTT-------------PATLFDYDMATGERTLLKQ 405 (682)
T ss_pred eeEEec-chhhhccccCCCCCCCccEEEEeecccc-------------cceeEEeeccCCcEEEEEe
Confidence 765432 122222222222 23344443332222 3579999999998887776
No 252
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.11 E-value=0.0014 Score=76.74 Aligned_cols=188 Identities=16% Similarity=0.262 Sum_probs=117.3
Q ss_pred ceeCcCCCEEEEE-eCCcEEEE----ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc--
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVV----NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-- 494 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~----d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-- 494 (721)
+.+-+|...++++ ..+.|.++ +........+. +.++..++||||+..|++++.. +++-+...+.
T Consensus 81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~-------~~l~~mt~~fd~ 153 (928)
T PF04762_consen 81 FQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE-------GNLLLMTRDFDP 153 (928)
T ss_pred EEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC-------CEEEEEeccceE
Confidence 4556666666666 57888888 55555554444 6789999999999999999732 2222221111
Q ss_pred ------cCCC---------Cccc-eEE-------------------------cccCCCCCcceEEccCCCEEEEEEe--e
Q 004971 495 ------DDVD---------GVSA-VRR-------------------------LTTNGKNNAFPSVSPDGKWIVFRST--R 531 (721)
Q Consensus 495 ------~~~~---------~~~~-~~~-------------------------l~~~~~~~~~~~~SpDg~~l~~~s~--~ 531 (721)
...+ ++++ .++ +. .......++|=.||+++|+.+- .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 1000 0000 001 11 1113344689999999999876 3
Q ss_pred CC-ceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec--CCC
Q 004971 532 TG-YKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSA 607 (721)
Q Consensus 532 ~g-~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~ 607 (721)
.+ .+.|.+|+-+ |+ +.-..+. .+-...++|-|.|..||...... +...|-.+.-+|-+-...... ...
T Consensus 233 ~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~----~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRPSGNLIASSQRLP----DRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCceeEEEEECCC-ce---EEeccccCCCccCCccCCCCCCEEEEEEEcC----CCcEEEEEecCCcEeeeEecCCCCCC
Confidence 34 5789999887 55 3333322 22235789999999999888643 556788888666443332211 134
Q ss_pred CCcCCeEECCCCCEEEEEEe
Q 004971 608 GRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~ 627 (721)
..+..+.|++|+..|++.-.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred ceeeEEEECCCCCEEEEEec
Confidence 56788999999999988664
No 253
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.0019 Score=61.77 Aligned_cols=209 Identities=13% Similarity=0.094 Sum_probs=119.5
Q ss_pred ccCCC-CCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEE-eccCC----cceeccCCeEEEEeccCC---CCcE
Q 004971 222 AVSPS-GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI-VENGG----WPCWVDESTLFFHRKSEE---DDWI 292 (721)
Q Consensus 222 ~~SPD-G~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~----~~~ws~dg~l~~~~~~~~---~g~~ 292 (721)
+++|- .+-++|+. +.+ .-.+++|..++...++. ...+. +-.||+||+++|+..++. .|.+
T Consensus 74 ~~~p~~~ravafAR-rPG----------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 74 AFHPALPRAVAFAR-RPG----------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred ecCCCCcceEEEEe-cCC----------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence 67774 45666764 333 46677888777655544 33332 459999999877654433 3566
Q ss_pred EEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEe------cCC-------CCeeeEEEEECCCCce
Q 004971 293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATR------RPT-------SSYRHIELFDLVKNKF 359 (721)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~------~~g-------~~~~~l~l~dl~tg~~ 359 (721)
-||+.. .+. .+.-....++...+.+.+.+ ||+.|+.+.- .-+ .-..++.++|..+|+.
T Consensus 143 GvYd~r--~~f------qrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 143 GVYDAR--EGF------QRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred EEEecc--ccc------ceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 778544 211 24444556677778999999 9999988642 001 1234678888888874
Q ss_pred EEeeccc--CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccC----------CCCceeC
Q 004971 360 IELTRFV--SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD----------GSFPSFS 427 (721)
Q Consensus 360 ~~l~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~S 427 (721)
.+-.... ...-.+..++..+||+.++-+...+..... ..+.-...++. .+...... ...++..
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~---ppLvg~~~~g~--~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL---PPLVGHFRKGE--PLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC---CcceeeccCCC--cCcccCCCHHHHHHHHhhhhheeec
Confidence 3322221 234457788999999766655555543211 11111111121 11111111 1134555
Q ss_pred cCCCEEEEEe--CCcEEEEECCCCceEEEe
Q 004971 428 PKGDRIAFVE--FPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 428 pDG~~la~~~--~~~l~v~d~~~g~~~~l~ 455 (721)
.+...++.++ .+...+||.++|......
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 5455666663 567889999999865443
No 254
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.09 E-value=0.00021 Score=69.19 Aligned_cols=237 Identities=12% Similarity=0.087 Sum_probs=128.7
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
-...+-+++..+..+.+.| +.-.++... +.+..|++||+.+.....+. ..++|...+..+.|+++|.+|+....
T Consensus 127 ~~~~~~ghG~sINeik~~p-~~~qlvls~----SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 127 CSKNYRGHGGSINEIKFHP-DRPQLVLSA----SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred hccceeccCccchhhhcCC-CCCcEEEEe----cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence 3444566777888999999 775555532 35667999999998865553 44567777889999999999887655
Q ss_pred eCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEE
Q 004971 390 RGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVW 464 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~ 464 (721)
+-. |-++.+..+. ..+ .....|+|++...-|... .....+..+.....-. ......+.+
T Consensus 202 Dhs---------lk~W~l~~~~f~~~l------E~s~~~~~~~t~~pfpt~-~~~fp~fst~diHrnyVDCvrw~gd~il 265 (385)
T KOG1034|consen 202 DHS---------LKLWRLNVKEFKNKL------ELSITYSPNKTTRPFPTP-KTHFPDFSTTDIHRNYVDCVRWFGDFIL 265 (385)
T ss_pred cce---------EEEEecChhHHhhhh------hhhcccCCCCccCcCCcc-ccccccccccccccchHHHHHHHhhhee
Confidence 544 4444444221 111 112456666654333210 0111111111000000 000112222
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEE-EccCC-----CCccceEEcccCC---CCCc--ceEEccCCCEEEEEEeeCC
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISI-NVDDV-----DGVSAVRRLTTNG---KNNA--FPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~-~~~~~-----~~~~~~~~l~~~~---~~~~--~~~~SpDg~~l~~~s~~~g 533 (721)
|..+ ++.+..|.. ..... -.......+.... .... ..+|.|=++.||....
T Consensus 266 Sksc---------------enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq--- 327 (385)
T KOG1034|consen 266 SKSC---------------ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ--- 327 (385)
T ss_pred eccc---------------CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC---
Confidence 2111 122223322 11000 0000111111111 1122 2466677888887776
Q ss_pred ceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
...+|+||++..++....+++.. ...+...+||-||..|++..++. .|++||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~-------~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG-------TVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC-------cEEEEEe
Confidence 67899999998775333444432 34567899999999999888875 8999985
No 255
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.08 E-value=0.0051 Score=65.82 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=153.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEE-cCCCCEEEEEEeeCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFI-SPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~~~~ 397 (721)
.+....+.+ ++..++... .+..+.+|+...+. ...+... ....+....+ ++++..++.......
T Consensus 67 ~i~~~~~~~-~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 67 SITSIAFSP-DGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eEEEEEECC-CCcEEEEec-----CCCcEEEEEcCCCceeEEEEecc--CCCceeeEEEECCCcceEEeccCCCC-----
Confidence 445667777 777666543 34458899987764 2222211 1123334444 777773333222212
Q ss_pred CcceeEEEeccC--C-CCcceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCC
Q 004971 398 GNNQLLLENIKS--P-LPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVRE 469 (721)
Q Consensus 398 ~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~ 469 (721)
..+.+++... . ...+.........+.|+|+++.++... +..+.+|++..+...... ...+..+.|+|++.
T Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 134 --GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred --ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 2344444443 1 111111222233579999999766664 788999999875544433 35678899999998
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE-EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~ 548 (721)
.++... ..++.+.+|+.. .. .... .+..+.... ...|+|++..++..+. +..+.+|+......
T Consensus 212 ~~~~~~------~~d~~i~~wd~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~- 275 (466)
T COG2319 212 LLIASG------SSDGTIRLWDLS--TG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSS---DGTIRLWDLRSSSS- 275 (466)
T ss_pred eEEEEe------cCCCcEEEEECC--CC---cEEeeecCCCCcce-eEeECCCCCEEEEecC---CCcEEEeeecCCCc-
Confidence 444442 256778888443 21 1222 244443332 2389999977774444 67888998876552
Q ss_pred ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cCCCCCcCCeEECCCCCEEEEE
Q 004971 549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
....+..+...+....|+|++..++....+. .+.+|+..+........ ..+...+..+.|++++..++..
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDG-------TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEEeeCCC-------cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 1222223345567789999998888854442 47778887776444432 1244446677774443555555
No 256
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.07 E-value=0.00097 Score=63.65 Aligned_cols=263 Identities=11% Similarity=0.068 Sum_probs=147.4
Q ss_pred CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec--CCCCCccccccCCCCC-----EEEEEecCCCCCCcccceee
Q 004971 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--PYGVADFSPAVSPSGK-----YTAVASYGNKGWDGEVEMLS 248 (721)
Q Consensus 176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt--~~~~~~~~p~~SPDG~-----~la~~~~~~~~w~~~~~~~~ 248 (721)
+.+|+..+-.+...+ ..+|..++.++++..... +++.......|.||.+ .||..+ ..
T Consensus 59 ~~rla~gS~~Ee~~N----kvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~------------D~ 122 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNN----KVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS------------DF 122 (364)
T ss_pred ceeEEEeeeccccCC----eeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc------------Ce
Confidence 445665543333222 256777777777665432 4555555557888753 455533 12
Q ss_pred eeEEEEEcCCCceeEE---EeccCC---cc----eecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC
Q 004971 249 TDIYIFLTRDGTQRVK---IVENGG---WP----CWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317 (721)
Q Consensus 249 ~~i~~~d~~~g~~~~l---~~~~~~---~~----~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (721)
-.||.+..+.++.... ..+... .| .|.. |-+++- .+.-+.+..||.+.....+ -...++..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ig--tSSiDTTCTiWdie~~~~~------~vkTQLIA 194 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIG--TSSIDTTCTIWDIETGVSG------TVKTQLIA 194 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeE--eecccCeEEEEEEeecccc------ceeeEEEe
Confidence 3455554433332211 111111 22 4552 223333 2333678889987654211 14567777
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC--CCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP--KTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~--~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
|.-.+..++|+. ++..++.... .++.++++|+..-+...+.. +.+ ......++|++..-.++.+-..+.
T Consensus 195 HDKEV~DIaf~~-~s~~~FASvg----aDGSvRmFDLR~leHSTIIY-E~p~~~~pLlRLswnkqDpnymATf~~dS--- 265 (364)
T KOG0290|consen 195 HDKEVYDIAFLK-GSRDVFASVG----ADGSVRMFDLRSLEHSTIIY-EDPSPSTPLLRLSWNKQDPNYMATFAMDS--- 265 (364)
T ss_pred cCcceeEEEecc-CccceEEEec----CCCcEEEEEecccccceEEe-cCCCCCCcceeeccCcCCchHHhhhhcCC---
Confidence 877889999998 8876654332 45669999998766444432 222 223344566655433322222222
Q ss_pred CCCcceeEEEeccCCC---CcceecccCCCCceeCcCCCE-EEEE-eCCcEEEEECCCCceEE----Ee----ecCceee
Q 004971 396 EDGNNQLLLENIKSPL---PDISLFRFDGSFPSFSPKGDR-IAFV-EFPGVYVVNSDGSNRRQ----VY----FKNAFST 462 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~SpDG~~-la~~-~~~~l~v~d~~~g~~~~----l~----~~~~~~~ 462 (721)
.++.+.+++-+. .++......+..++|.|..+. |..+ .+.+.-+||+..-.... +. .+.+..+
T Consensus 266 ----~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi 341 (364)
T KOG0290|consen 266 ----NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI 341 (364)
T ss_pred ----ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence 456777776553 344445566778899997654 5554 47788999997532211 11 5678899
Q ss_pred EEcC-CCCeEEEEe
Q 004971 463 VWDP-VREAVVYTS 475 (721)
Q Consensus 463 ~~sp-dg~~la~~~ 475 (721)
.|++ .+.+++++.
T Consensus 342 ~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 342 QWSSSQPDWIAICF 355 (364)
T ss_pred eecccCCCEEEEEe
Confidence 9995 577888775
No 257
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.07 E-value=0.0021 Score=63.71 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=106.4
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEE-ECCC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV-NSDG 448 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~-d~~~ 448 (721)
....+++|+||+.+++.....+. ..++.....+....+. .......|.|+++|...++.. .....++ +...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~------~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGG------RSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCC------CEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 56789999999999998732221 4567766544433222 223455689999976555543 3333333 3334
Q ss_pred CceEE--Ee---e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC---CccceEEcccC-CCCCcceEE
Q 004971 449 SNRRQ--VY---F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD---GVSAVRRLTTN-GKNNAFPSV 518 (721)
Q Consensus 449 g~~~~--l~---~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~ 518 (721)
+.... +. . +.+..+.+||||.++++.... ...+++.|-.+..+... .......+... ......+.|
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~----~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVED----GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEec----CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 44333 33 1 267899999999999999742 13466666666655431 00111122211 235567899
Q ss_pred ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~ 576 (721)
.++++.++.....++.... .+..+++. ...+..........+...+...++...
T Consensus 174 ~~~~~L~V~~~~~~~~~~~-~v~~dG~~---~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 174 SDDSTLVVLGRSAGGPVVR-LVSVDGGP---STPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred cCCCEEEEEeCCCCCceeE-EEEccCCc---ccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 9999866665543332222 46777665 445533333223344444444444333
No 258
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.04 E-value=0.00025 Score=74.58 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=138.8
Q ss_pred CCceeCcCCCEE-EEE-eCCcEEEEECCCCceEEE--e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 422 SFPSFSPKGDRI-AFV-EFPGVYVVNSDGSNRRQV--Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 422 ~~~~~SpDG~~l-a~~-~~~~l~v~d~~~g~~~~l--~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
..+.|.| |+.. +.. ++..+..||+++++..-. . .+.+..++|.|+..-++++. ..++.+.||++..
T Consensus 104 fDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG------gRDg~illWD~R~ 176 (720)
T KOG0321|consen 104 FDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG------GRDGEILLWDCRC 176 (720)
T ss_pred EeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeec------cCCCcEEEEEEec
Confidence 3468899 5544 444 688999999998875433 2 56677899999998888776 3689999999987
Q ss_pred cCCC---------------CccceEEccc-------CCCCCcc---eEEccCCCEEEEEEeeCCceeEEEEECCCCcc--
Q 004971 495 DDVD---------------GVSAVRRLTT-------NGKNNAF---PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-- 547 (721)
Q Consensus 495 ~~~~---------------~~~~~~~l~~-------~~~~~~~---~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-- 547 (721)
.+.+ +......+.. ....+.. ..+..|...|+..+. .+..|.+||+.....
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAY 254 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC--CCcceEEEeeccccccc
Confidence 6521 0001111111 1112222 456678888887765 467899999975432
Q ss_pred ----cceEECcCC---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-----cCCeEE
Q 004971 548 ----YGLHRLTEG---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-----ANHPYF 615 (721)
Q Consensus 548 ----~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-----~~~~~~ 615 (721)
.....+..+ ...+..+....-|.+|+....+. .||.|++.+-....+.. ..+. ..--..
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-------sIy~ynm~s~s~sP~~~--~sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-------SIYFYNMRSLSISPVAE--FSGKLNSSFYVKSEL 325 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-------cEEEEeccccCcCchhh--ccCcccceeeeeeec
Confidence 001111111 12234566666689998887775 89999997754443322 1111 112346
Q ss_pred CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--CeEEeccCCCCCCCceecCC
Q 004971 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~lt~~~~~~~~~~~sp~ 676 (721)
|||+.+|+..+.+. +.|+|.++.- .+..+..|...+...+|.|.
T Consensus 326 Spd~~~l~SgSsd~-----------------~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDE-----------------QAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CCCCceEeccCCCc-----------------ceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 99999998877765 3677776664 34667777777888899884
No 259
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.03 E-value=0.001 Score=72.75 Aligned_cols=253 Identities=12% Similarity=0.029 Sum_probs=144.7
Q ss_pred CCcEEEEEEecCCCcceeccccceEE-eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971 289 DDWISVYKVILPQTGLVSTESVSIQR-VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367 (721)
Q Consensus 289 ~g~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~ 367 (721)
+..+.+|...... .... +.++...+..+++.. -+.+++. |+.+..+++||..+|+..... .+
T Consensus 227 ~~tl~~~~~~~~~---------~i~~~l~GH~g~V~~l~~~~-~~~~lvs-----gS~D~t~rvWd~~sg~C~~~l--~g 289 (537)
T KOG0274|consen 227 DSTLHLWDLNNGY---------LILTRLVGHFGGVWGLAFPS-GGDKLVS-----GSTDKTERVWDCSTGECTHSL--QG 289 (537)
T ss_pred CceeEEeecccce---------EEEeeccCCCCCceeEEEec-CCCEEEE-----EecCCcEEeEecCCCcEEEEe--cC
Confidence 5666777432221 2333 566666777788854 3666665 335667999999999865554 23
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYV 443 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v 443 (721)
+...+..+ +-....++..+.+ ..+.++++..+.. +... ...+. +..-++..++..+ ++.|.+
T Consensus 290 h~stv~~~--~~~~~~~~sgs~D---------~tVkVW~v~n~~~-l~l~~~h~~~V~--~v~~~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 290 HTSSVRCL--TIDPFLLVSGSRD---------NTVKVWDVTNGAC-LNLLRGHTGPVN--CVQLDEPLLVSGSYDGTVKV 355 (537)
T ss_pred CCceEEEE--EccCceEeeccCC---------ceEEEEeccCcce-EEEeccccccEE--EEEecCCEEEEEecCceEEE
Confidence 33333222 2223333322222 2355555554421 1111 11222 2333466666664 668999
Q ss_pred EECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 444 VNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 444 ~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
|++..++.. .+. .+.+..+.+.+. ..++-.+ .++.+++|++..... ....+..+...+ .....
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-------~D~~IkvWdl~~~~~----c~~tl~~h~~~v--~~l~~ 421 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-------LDTTIKVWDLRTKRK----CIHTLQGHTSLV--SSLLL 421 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-------eccceEeecCCchhh----hhhhhcCCcccc--ccccc
Confidence 999977743 333 344555555443 6666655 468899999876521 445555555433 33445
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
.++.|+..+. +..|.+||..+++. +..+.. +...+..+.+. ...++....+. .+.+||+..++..
T Consensus 422 ~~~~Lvs~~a---D~~Ik~WD~~~~~~--~~~~~~~~~~~v~~l~~~--~~~il~s~~~~-------~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 422 RDNFLVSSSA---DGTIKLWDAEEGEC--LRTLEGRHVGGVSALALG--KEEILCSSDDG-------SVKLWDLRSGTLI 487 (537)
T ss_pred ccceeEeccc---cccEEEeecccCce--eeeeccCCcccEEEeecC--cceEEEEecCC-------eeEEEecccCchh
Confidence 5777877776 67899999999885 555554 23445555554 23444444443 7899999888755
Q ss_pred E
Q 004971 600 K 600 (721)
Q Consensus 600 ~ 600 (721)
+
T Consensus 488 ~ 488 (537)
T KOG0274|consen 488 R 488 (537)
T ss_pred h
Confidence 4
No 260
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0073 Score=63.98 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=151.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....+...| +|..+++..... . .+...+............ ......+.+.++++.+++....+..
T Consensus 32 ~~~~v~~~~-~g~~~~v~~~~~--~--~~~~~~~~~n~~~~~~~~--g~~~p~~i~v~~~~~~vyv~~~~~~-------- 96 (381)
T COG3391 32 GPGGVAVNP-DGTQVYVANSGS--N--DVSVIDATSNTVTQSLSV--GGVYPAGVAVNPAGNKVYVTTGDSN-------- 96 (381)
T ss_pred CCceeEEcC-ccCEEEEEeecC--c--eeeecccccceeeeeccC--CCccccceeeCCCCCeEEEecCCCC--------
Confidence 345667788 887777654332 1 356665553222221111 1134557789999998877654432
Q ss_pred eeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEE
Q 004971 401 QLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 401 ~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~ 473 (721)
.+...+..... ............++++|+++.+++.. ...+.+.|..++.... +. ......++++|+|++++.
T Consensus 97 ~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 97 TVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV 176 (381)
T ss_pred eEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence 34444432221 11111122455689999999988883 3678888887776433 33 223578999999999998
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEE-----cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRR-----LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~ 548 (721)
+.. .++.+.+.. .... ...+ ............++|||++++.....+.+..+.++|..++..
T Consensus 177 ~~~------~~~~v~vi~--~~~~----~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v- 243 (381)
T COG3391 177 TNS------DDNTVSVID--TSGN----SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV- 243 (381)
T ss_pred Eec------CCCeEEEEe--CCCc----ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-
Confidence 852 344455444 3332 2222 111123556789999999999888754446899999998873
Q ss_pred ceEEC--cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 549 GLHRL--TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 549 ~~~~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
... ............+|+|+.+++..... ..+++.|..+.......
T Consensus 244 --~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~------~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 244 --TATDLPVGSGAPRGVAVDPAGKAAYVANSQG------GTVSVIDGATDRVVKTG 291 (381)
T ss_pred --EEeccccccCCCCceeECCCCCEEEEEecCC------CeEEEEeCCCCceeeee
Confidence 332 22221345789999999988886653 37999998887665544
No 261
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.00 E-value=0.0023 Score=61.14 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=141.0
Q ss_pred CCCCCcccCceeecCCCC-----EEEEEEecCCCCeeeEEEEECCC--CceEEeecc-----cCCCCcccCcEEcCC-CC
Q 004971 316 TPPGLHAFTPATSPGNNK-----FIAVATRRPTSSYRHIELFDLVK--NKFIELTRF-----VSPKTHHLNPFISPD-SS 382 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~-----~la~~~~~~g~~~~~l~l~dl~t--g~~~~l~~~-----~~~~~~~~~~~~Spd-g~ 382 (721)
+++.+.+..+.|.| |.+ .||.. ...|++|.+.. .+......+ .........+.|..- -+
T Consensus 93 fd~~YP~tK~~wiP-d~~g~~pdlLATs-------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIP-DSKGVYPDLLATS-------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred CCCCCCccceEecC-CccccCcchhhcc-------cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 45667777888998 764 23331 12377777653 222111111 112233556677653 34
Q ss_pred EEEEEEeeCCCCCCCCcceeEEEeccCC-----CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe
Q 004971 383 RVGYHKCRGGSTREDGNNQLLLENIKSP-----LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~ 455 (721)
+|...+.+.. -.+ +++..+ .+++.....++..++|+.+|..+... .++.+.++|+..-+...|.
T Consensus 165 ~igtSSiDTT-------CTi--Wdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 165 LIGTSSIDTT-------CTI--WDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred eeEeecccCe-------EEE--EEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 5555444444 333 444433 23445556667778999877655443 4899999999877754444
Q ss_pred -e-----cCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEE
Q 004971 456 -F-----KNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 456 -~-----~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~ 528 (721)
. .....++|++..- ++|... -+..++.|.++..... .+.+|..|...+...+|.|-.+.-++.
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~------~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFA------MDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhh------cCCceEEEEEecCCCc----ceehhhcCcccccceEecCCCCceeee
Confidence 2 2334677776543 344322 2467788888887775 788899999999999999987655544
Q ss_pred EeeCCceeEEEEECCCCcc-cceEEC--cCCCcCceeeEEcc-CCCEEEEEEcc
Q 004971 529 STRTGYKNLYIMDAEGGEG-YGLHRL--TEGPWSDTMCNWSP-DGEWIAFASDR 578 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~-~~~~~l--~~~~~~~~~~~~Sp-DG~~l~~~~~~ 578 (721)
... +.+..+||+..--. .....+ ......++.+.|+| .+.||+++.+.
T Consensus 306 aGD--D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 306 AGD--DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cCC--cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 432 67888999875321 001111 12345678999995 46799988875
No 262
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.99 E-value=0.0036 Score=66.93 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=115.1
Q ss_pred CcCCCEEEEE--e-CCcEEEEECCC-Cc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 427 SPKGDRIAFV--E-FPGVYVVNSDG-SN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 427 SpDG~~la~~--~-~~~l~v~d~~~-g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
++++..++.. . +..+.+|+..+ .. ...+. ...+..+.|+|+++.++.... .++.+.+|.+....
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--- 189 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------LDGTIKLWDLRTGK--- 189 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------CCCceEEEEcCCCc---
Confidence 7778733333 2 66899999987 33 33333 456678999999996666531 36788888876522
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
....+..+...+...+|+|+++.++..... +..|.+||...+.. .. .+..+.... ...|+|++..++....+
T Consensus 190 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~wd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 190 --PLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLSTGKL--LRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred --eEEeeccCCCceEEEEEcCCcceEEEEecC--CCcEEEEECCCCcE--EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 444555556678889999999844444122 56677888776553 33 244333322 22799999777755555
Q ss_pred CCCCCCceeEEEEecCCCce-EEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 579 DNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
. .+.+|++..... .... ..+...+....|+|++..++..+.+
T Consensus 263 ~-------~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 263 G-------TIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred C-------cEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCC
Confidence 3 799999876653 2222 2355667788999999988875544
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.92 E-value=0.0012 Score=70.33 Aligned_cols=209 Identities=9% Similarity=-0.017 Sum_probs=129.4
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 422 (721)
|+.+..+.+|.+.+.+ .+..+.+|...+.+.....++. |+..+.+.. ..+|.. ..-...+..+...+.
T Consensus 77 g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T-------akvW~~--~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDST-------AKVWRI--GELVYSLQGHTASVW 144 (745)
T ss_pred ecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccc-------eEEecc--hhhhcccCCcchhee
Confidence 3455668899988776 5555667777787777777776 666665555 344432 111111121222233
Q ss_pred CceeCcCCCEEEEEeCCcEEEEECCCCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 423 ~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
.+..-|++.++--..+..|++|.- ++. +.+. ...++.+++-+++.+|-.. .++.+++|.++. .
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScs--------NDg~Ir~w~~~g--e-- 210 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCS--------NDGSIRLWDLDG--E-- 210 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeec--------CCceEEEEeccC--c--
Confidence 334456664333335888999964 333 2332 4567788888887666443 578899998843 2
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.+.+...+...++.....+++..|+..++ +++|.+|+.. +. ...++-....++...+-++|. |+++..++
T Consensus 211 --~l~~~~ghtn~vYsis~~~~~~~Ivs~gE---DrtlriW~~~--e~--~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG 280 (745)
T KOG0301|consen 211 --VLLEMHGHTNFVYSISMALSDGLIVSTGE---DRTLRIWKKD--EC--VQVITLPTTSIWSAKVLLNGD-IVVGGSDG 280 (745)
T ss_pred --eeeeeeccceEEEEEEecCCCCeEEEecC---CceEEEeecC--ce--EEEEecCccceEEEEEeeCCC-EEEeccCc
Confidence 56666666666777777778888887777 7899999876 43 333443333556777777887 66666664
Q ss_pred CCCCCceeEEEEecC
Q 004971 580 NPGSGSFEMYLIHPN 594 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~ 594 (721)
.||+|..+
T Consensus 281 -------~VrVfT~~ 288 (745)
T KOG0301|consen 281 -------RVRVFTVD 288 (745)
T ss_pred -------eEEEEEec
Confidence 67776654
No 264
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=1.8e-05 Score=83.97 Aligned_cols=149 Identities=20% Similarity=0.203 Sum_probs=107.8
Q ss_pred ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCce
Q 004971 456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535 (721)
Q Consensus 456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~ 535 (721)
...+..+.|+++...|+..+ .++.+++|++.... .++.|+.+......+.|+|-|.+.+-.+. +.
T Consensus 70 espIeSl~f~~~E~Llaags-------asgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gSt---dt 134 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGS-------ASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGST---DT 134 (825)
T ss_pred CCcceeeecCcchhhhcccc-------cCCceeeeehhhhh-----hhhhhhccccCcceeeeccceEEeccccc---cc
Confidence 34566777877777776654 57899999998654 67788888877888899999998865554 67
Q ss_pred eEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615 (721)
Q Consensus 536 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 615 (721)
++.+||.....+ ......+.+.+..+.|+|||+|++....+. .+.+||+..|+...-+.. +.+.+..+.|
T Consensus 135 d~~iwD~Rk~Gc--~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-------tvki~d~~agk~~~ef~~-~e~~v~sle~ 204 (825)
T KOG0267|consen 135 DLKIWDIRKKGC--SHTYKSHTRVVDVLRLSPDGRWVASGGEDN-------TVKIWDLTAGKLSKEFKS-HEGKVQSLEF 204 (825)
T ss_pred cceehhhhccCc--eeeecCCcceeEEEeecCCCceeeccCCcc-------eeeeeccccccccccccc-cccccccccc
Confidence 899999874332 444445666677899999999998887764 899999988776544443 5666777777
Q ss_pred CCCCCEEEEEEecC
Q 004971 616 SPDGKSIVFTSDYG 629 (721)
Q Consensus 616 SpDG~~l~~~~~~~ 629 (721)
.|-.-.++-.+.+.
T Consensus 205 hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDR 218 (825)
T ss_pred CchhhhhccCCCCc
Confidence 77655444444443
No 265
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=0.0038 Score=60.56 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=100.8
Q ss_pred CCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEe--ecCceeeEEcCCC--CeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVR--EAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg--~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
....+.+++ .+|+++-...|++|.....- ...+. ...-.-.+..|.. ..|+|-+ ..-+.++|.++.
T Consensus 96 ~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg------~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 96 EIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG------FKTGQVQIVDLA 167 (346)
T ss_pred ceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC------CccceEEEEEhh
Confidence 344556664 47888889999999886332 22222 1111233444433 3344322 234777777776
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCE
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEW 571 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~ 571 (721)
.... +.+..+..|...+.-++.+-+|..||.++.. ..=|++||..+|+. +..+-.+ ...+..++||||+++
T Consensus 168 ~~~~---~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk--GTLIRIFdt~~g~~--l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 168 STKP---NAPSIINAHDSDIACVALNLQGTLVATASTK--GTLIRIFDTEDGTL--LQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred hcCc---CCceEEEcccCceeEEEEcCCccEEEEeccC--cEEEEEEEcCCCcE--eeeeecCCchheEEEEEeCCCccE
Confidence 5432 2346677788788889999999999999873 34688899999986 5555443 335678999999999
Q ss_pred EEEEEccCCCCCCceeEEEEecCC
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
|+++++.+ +|.++.+..
T Consensus 241 LavsSdKg-------TlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKG-------TLHIFSLRD 257 (346)
T ss_pred EEEEcCCC-------eEEEEEeec
Confidence 99999874 555555533
No 266
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.91 E-value=0.0011 Score=74.02 Aligned_cols=242 Identities=15% Similarity=0.180 Sum_probs=130.5
Q ss_pred EEEEEecCCCCCCCCCccceEEEEeCCCcceEee-cCCCCCccccccCCCCCEEEE-EecCC--CCCCcccceeeeeEEE
Q 004971 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRL-TPYGVADFSPAVSPSGKYTAV-ASYGN--KGWDGEVEMLSTDIYI 253 (721)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~l-t~~~~~~~~p~~SPDG~~la~-~~~~~--~~w~~~~~~~~~~i~~ 253 (721)
+|+|+.+..+ +|...|.++..++.+ +........|.|||||++||| ++..+ + ...||+
T Consensus 320 kiAfv~~~~~---------~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g---------~s~vYv 381 (912)
T TIGR02171 320 KLAFRNDVTG---------NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPG---------KSSVYV 381 (912)
T ss_pred eEEEEEcCCC---------eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCC---------CceEEE
Confidence 4888876432 899999999999988 777888899999999999999 55544 3 467999
Q ss_pred EEcCCCc--eeEEEeccCCcceec--cCCe--EEEEeccC---CCCc---EEEEEEecCCCcceeccccceEEeCCCCCc
Q 004971 254 FLTRDGT--QRVKIVENGGWPCWV--DEST--LFFHRKSE---EDDW---ISVYKVILPQTGLVSTESVSIQRVTPPGLH 321 (721)
Q Consensus 254 ~d~~~g~--~~~l~~~~~~~~~ws--~dg~--l~~~~~~~---~~g~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (721)
.++.+.. ..+|-.+....|.|. .+|. |.|..... .+.. ..-|.+.-..++ +++++++....+
T Consensus 382 ~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk-----fg~p~kl~dga~- 455 (912)
T TIGR02171 382 RNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK-----FGTPKKLFDGAY- 455 (912)
T ss_pred EehhccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC-----CCCchhhhcccc-
Confidence 9987644 344444555688887 4443 54422111 0111 234655554443 468888876543
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEE--ECCCCceEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCC----
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELF--DLVKNKFIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGST---- 394 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~--dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~---- 394 (721)
+--+|. |.+ +++...+. -+.++. ++.+++...--. +....+..++.||. +-+|....+...
T Consensus 456 --hggvs~-~~~-lavtga~l----lr~~~~~~~~~~~~~~vwyn----~eqacn~sl~~d~~~rt~fldfgg~tg~~fv 523 (912)
T TIGR02171 456 --HGGVSE-DLN-LAVSGARL----LRAHVANEDVDNGKDDVWYN----GEQACNASLAKDGSKRTLFLDFGGSTGQAFV 523 (912)
T ss_pred --cccccc-CCc-eeeehhhH----hhhhhcccccccCccceeec----chhccchhhhccCCcceEEEecCCccchhhc
Confidence 222344 554 44322111 112222 223333211111 22344566766763 444544333211
Q ss_pred C--CCCcceeEEEeccCCCCcceecccC--CCCceeCcCCCEEEEE-------eCCcEEEEECCCCceEEEe
Q 004971 395 R--EDGNNQLLLENIKSPLPDISLFRFD--GSFPSFSPKGDRIAFV-------EFPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 395 ~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~SpDG~~la~~-------~~~~l~v~d~~~g~~~~l~ 455 (721)
+ .....++.+.|-.+...+-...+.. -.+..|-.+.+.++++ ....|.++++..++...|.
T Consensus 524 g~~y~~he~~lvads~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~ 595 (912)
T TIGR02171 524 GQKYGVHERLLVADSKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELV 595 (912)
T ss_pred cccccceeEEEEecCCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEee
Confidence 1 1122456666655442211111100 0122354433344443 2567999999988877776
No 267
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.90 E-value=0.0088 Score=60.63 Aligned_cols=288 Identities=11% Similarity=0.022 Sum_probs=163.8
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE-------cCCCCEEEEEEeeCCCCCC
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI-------SPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~-------Spdg~~l~~~~~~~~~~~~ 396 (721)
...+-| +...|+.+....+-..-.+|+|+-.......-+...- .....+..| ...|++++....+..
T Consensus 130 e~~V~p-sDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~---- 203 (463)
T KOG0270|consen 130 EEQVKP-SDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE---- 203 (463)
T ss_pred cceecc-CCcEEEEeeccCCceEEEEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCce----
Confidence 455666 6666666655555556667888765433211110000 111112222 123567777666655
Q ss_pred CCcceeEEEeccCCCCcceecc----------------c-----CCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEE
Q 004971 397 DGNNQLLLENIKSPLPDISLFR----------------F-----DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ 453 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~~----------------~-----~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~ 453 (721)
..||-.++.....+...+. . .+-.+.|..+-+.|.+. .+..|.+||+++|++..
T Consensus 204 ---IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~ 280 (463)
T KOG0270|consen 204 ---IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS 280 (463)
T ss_pred ---eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence 3455444433322211111 0 00134555555555554 37899999999999876
Q ss_pred Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEe
Q 004971 454 VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 454 l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~ 530 (721)
+. .+.+..+.|.|....+.... ..++.+.|++....+. ....+.. .+.+-.++|.|-....++.+.
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsG------s~D~~V~l~D~R~~~~----s~~~wk~-~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSG------SYDGTVALKDCRDPSN----SGKEWKF-DGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEec------cccceEEeeeccCccc----cCceEEe-ccceEEEEecCCCceeEEEec
Confidence 65 56788999999776666554 3578888888764221 1122222 235566889888877777765
Q ss_pred eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCC
Q 004971 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGR 609 (721)
Q Consensus 531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~ 609 (721)
. ++.||-+|..... +.+..+-.+...+..+.+++.-..++.+.... ..+.+|++.....+.+-.. ..-+.
T Consensus 350 d--dG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 350 D--DGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred C--CceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCcccccccccccc
Confidence 4 5679999987542 23667777777888999988766655554322 3778887765544322210 01123
Q ss_pred cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
..+.++-|+-..++..+...+ .+.+||+.+.
T Consensus 421 l~c~~~~~~~a~~la~GG~k~----------------~~~vwd~~~~ 451 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKA----------------VLRVWDIFTN 451 (463)
T ss_pred eeecccCCCcceEEEecCccc----------------eEEEeecccC
Confidence 455666777655444443332 3778887654
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.89 E-value=0.038 Score=58.75 Aligned_cols=293 Identities=13% Similarity=0.097 Sum_probs=135.8
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
+|.+++++|++.+..+ .|+.++..+|+. .+..........|.. ++..+++... ..
T Consensus 60 ~p~v~~~~v~v~~~~g----------~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~------------~g 115 (377)
T TIGR03300 60 QPAVAGGKVYAADADG----------TVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE------------KG 115 (377)
T ss_pred ceEEECCEEEEECCCC----------eEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC------------CC
Confidence 5666788777655432 799999876664 343222222233333 5666666432 25
Q ss_pred eEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCC-----c
Q 004971 250 DIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL-----H 321 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 321 (721)
.||.+|.++|+..--....+. .|.. .++++++. . .++. ++.++...+. ...+...... .
T Consensus 116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~--~-~~g~--l~a~d~~tG~-------~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVR--T-NDGR--LTALDAATGE-------RLWTYSRVTPALTLRG 182 (377)
T ss_pred EEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEE--C-CCCe--EEEEEcCCCc-------eeeEEccCCCceeecC
Confidence 799999988885432211111 2222 23455552 1 1333 3322322222 2222211110 0
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---------cccCcEEcCCCCEEEEEEeeCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---------HHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---------~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
...+.+ . + ..+++.. .+..++.+|+++|+..--........ ....+.+. +..+++....+
T Consensus 183 ~~sp~~-~-~-~~v~~~~-----~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g- 251 (377)
T TIGR03300 183 SASPVI-A-D-GGVLVGF-----AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQG- 251 (377)
T ss_pred CCCCEE-E-C-CEEEEEC-----CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCC-
Confidence 122333 2 3 3454422 23358899998887432111110000 01123332 44666544332
Q ss_pred CCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCC
Q 004971 393 STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPV 467 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spd 467 (721)
.++..+..++.............+. .++.+|++. .++.|+.+|..+|+...-. ......+.. .
T Consensus 252 --------~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~ 319 (377)
T TIGR03300 252 --------RVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--V 319 (377)
T ss_pred --------EEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--E
Confidence 2555555544221111111111222 345566666 4788999999888754222 111222333 4
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
+..|++.+ .++. |+.++..++ ....++..+. .....|.+.. ..|++.+. +..||.+
T Consensus 320 g~~l~~~~-------~~G~--l~~~d~~tG---~~~~~~~~~~~~~~~sp~~~~--~~l~v~~~---dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGD-------FEGY--LHWLSREDG---SFVARLKTDGSGIASPPVVVG--DGLLVQTR---DGDLYAF 376 (377)
T ss_pred CCEEEEEe-------CCCE--EEEEECCCC---CEEEEEEcCCCccccCCEEEC--CEEEEEeC---CceEEEe
Confidence 56777664 3444 444444432 1333443333 2344555543 34776665 5667654
No 269
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.00069 Score=62.92 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=116.8
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCC---C------ceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDG---S------NRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~---g------~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i 489 (721)
-+|||.+++++.. ..++|.+..+.+ + +...++ ++.+..++|. .+.|+.. .++.++=
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~--------gdG~V~g 85 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG--------GDGLVYG 85 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec--------cCceEEE
Confidence 4889999887776 477888887653 1 112222 4555666665 2334333 2455555
Q ss_pred EEEEccCCC-Ccc------ceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCc
Q 004971 490 ISINVDDVD-GVS------AVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSD 560 (721)
Q Consensus 490 ~~~~~~~~~-~~~------~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~ 560 (721)
|........ ... .+.+....+ -.+..+...|....|+++.. +..||.||+++|+ +++.. .+...+
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---D~~~y~~dlE~G~---i~r~~rGHtDYv 159 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---DGVIYQVDLEDGR---IQREYRGHTDYV 159 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC---CeEEEEEEecCCE---EEEEEcCCccee
Confidence 555432110 000 000110111 13455667788888888874 8999999999999 44444 454445
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH 640 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 640 (721)
..++--.-..+|+.++.++ .+.+||..+++..+....-.......|. .|++|-....+...- -+..
T Consensus 160 H~vv~R~~~~qilsG~EDG-------tvRvWd~kt~k~v~~ie~yk~~~~lRp~---~g~wigala~~edWl-vCGg--- 225 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDG-------TVRVWDTKTQKHVSMIEPYKNPNLLRPD---WGKWIGALAVNEDWL-VCGG--- 225 (325)
T ss_pred eeeeecccCcceeecCCCc-------cEEEEeccccceeEEeccccChhhcCcc---cCceeEEEeccCceE-EecC---
Confidence 5555522334577777775 8999999999887765421111111111 244443332221100 0000
Q ss_pred CCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 641 QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 641 ~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
-+.+-+|.+...+.+++..-...+....|--+
T Consensus 226 ----Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 226 ----GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred ----CCceeEEeccCCCceEEEecccceeEeeeecc
Confidence 01367777777776666554444555555443
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0014 Score=65.10 Aligned_cols=194 Identities=10% Similarity=0.051 Sum_probs=126.4
Q ss_pred CCCEEEEEeCCcEEEEECCC-----CceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971 429 KGDRIAFVEFPGVYVVNSDG-----SNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 429 DG~~la~~~~~~l~v~d~~~-----g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
||..+...+.+.+.+|.... .....+. ......+.-.+....++.... . ..-....||++..... .-.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GG-k---e~~n~lkiwdle~~~q--iw~ 188 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGG-K---ENINELKIWDLEQSKQ--IWS 188 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCc-h---hcccceeeeeccccee--eee
Confidence 46555555788899988873 3344444 333444555555555554321 0 1235677888765320 000
Q ss_pred eEEcccCC------CCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 503 VRRLTTNG------KNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 503 ~~~l~~~~------~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
.+.+.... -......|-++ ...++..+. ..++.+||...++ +++..+......+.+....|+|+.|++
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~---~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR---YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEec---ceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE
Confidence 01111111 12344577776 777777776 7899999998655 456667666677788999999999988
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
+.... +|..+|..+++.......+..+.+.++...|.+++|+..+-+. .|.++|++
T Consensus 265 gn~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR-----------------yvRIhD~k 320 (412)
T KOG3881|consen 265 GNTKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR-----------------YVRIHDIK 320 (412)
T ss_pred ecccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce-----------------eEEEeecc
Confidence 88775 8999999998765553334567889999999999998877654 38888888
Q ss_pred CC
Q 004971 655 GS 656 (721)
Q Consensus 655 ~~ 656 (721)
+.
T Consensus 321 tr 322 (412)
T KOG3881|consen 321 TR 322 (412)
T ss_pred cc
Confidence 73
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.85 E-value=0.041 Score=58.53 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=55.6
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
.++.+|++.+. +..|+.+|..+|+. +-.... .......|.. .|..|++...++ .|+.+|..+|+.
T Consensus 277 ~~~~~vyv~~~---~G~l~~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G-------~l~~~d~~tG~~ 342 (377)
T TIGR03300 277 VDDNRLYVTDA---DGVVVALDRRSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEG-------YLHWLSREDGSF 342 (377)
T ss_pred EeCCEEEEECC---CCeEEEEECCCCcE--EEccccccCCccccCEE--ECCEEEEEeCCC-------EEEEEECCCCCE
Confidence 35677777764 67899999998873 222211 1112233443 466787777664 899999988876
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.--...........|.+. ++ .|++.+.++
T Consensus 343 ~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG 371 (377)
T TIGR03300 343 VARLKTDGSGIASPPVVV-GD-GLLVQTRDG 371 (377)
T ss_pred EEEEEcCCCccccCCEEE-CC-EEEEEeCCc
Confidence 543332121234556655 33 466666554
No 272
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.80 E-value=8.3e-05 Score=75.10 Aligned_cols=211 Identities=10% Similarity=0.037 Sum_probs=145.9
Q ss_pred CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+..+.++.+|+.|++.+ .+.|-.+|..++... .+. ...+.++.|-.+.+++|++. +-++|.++-.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ----------K~y~yvYD~~G 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ----------KKYVYVYDNNG 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh----------hceEEEecCCC
Confidence 345578899999999984 788999998887743 333 56678889988888888863 34555566655
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~ 576 (721)
. ++..|.... .+..+.|-|--=.|+.++. ...|.-.|+.+|+. +..+..+.+....+.-.|-...|-.+.
T Consensus 201 t----ElHClk~~~-~v~rLeFLPyHfLL~~~~~---~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 201 T----ELHCLKRHI-RVARLEFLPYHFLLVAASE---AGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred c----EEeehhhcC-chhhhcccchhheeeeccc---CCceEEEeechhhh--hHHHHccCCccchhhcCCccceEEEcC
Confidence 4 666666655 6677888887555554444 55688889999986 555655556556667777766555555
Q ss_pred ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
..+ .|-+|.....++..-..+ |.+.+.++++.++|+|++.+..+. .+-+||+.+-
T Consensus 271 snG-------tVSlWSP~skePLvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr-----------------~~kIWDlR~~ 325 (545)
T KOG1272|consen 271 SNG-------TVSLWSPNSKEPLVKILC-HRGPVSSIAVDRGGRYMATTGLDR-----------------KVKIWDLRNF 325 (545)
T ss_pred CCc-------eEEecCCCCcchHHHHHh-cCCCcceEEECCCCcEEeeccccc-----------------ceeEeeeccc
Confidence 543 899999988764322222 788999999999999999887765 3888898664
Q ss_pred C-eEEeccCCCCCCCceecCC
Q 004971 657 D-LKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 657 ~-~~~lt~~~~~~~~~~~sp~ 676 (721)
. +..+.. .......++|-.
T Consensus 326 ~ql~t~~t-p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 326 YQLHTYRT-PHPASNLSLSQK 345 (545)
T ss_pred cccceeec-CCCccccccccc
Confidence 3 222222 233455666653
No 273
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.011 Score=57.17 Aligned_cols=239 Identities=14% Similarity=0.103 Sum_probs=136.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC--CceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK--NKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTRE 396 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t--g~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~ 396 (721)
-++.+.|.+ -|++++.- +.+..+.+||... ++...-.....+.+.+..+.|.+- |+.|+.++.+..
T Consensus 15 lihdVs~D~-~GRRmAtC-----SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt---- 84 (361)
T KOG2445|consen 15 LIHDVSFDF-YGRRMATC-----SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT---- 84 (361)
T ss_pred eeeeeeecc-cCceeeec-----cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc----
Confidence 456778888 99999883 3556699999643 344344445566777878888654 888888888877
Q ss_pred CCcceeEEEec---cCCCC------cceecccCCCCceeCcC--CCEEEEE-eCCcEEEEECCC-CceEE---------E
Q 004971 397 DGNNQLLLENI---KSPLP------DISLFRFDGSFPSFSPK--GDRIAFV-EFPGVYVVNSDG-SNRRQ---------V 454 (721)
Q Consensus 397 ~~~~~l~~~~~---~~~~~------~~~~~~~~~~~~~~SpD--G~~la~~-~~~~l~v~d~~~-g~~~~---------l 454 (721)
..||--.. +.+.. .+...+.....+.|+|. |-.||.+ .++.|.+|+.-. ....+ +
T Consensus 85 ---v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 85 ---VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred ---eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 34443321 11111 11111223334566664 4455555 467777777532 11111 1
Q ss_pred e------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC-CC-
Q 004971 455 Y------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-GK- 523 (721)
Q Consensus 455 ~------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD-g~- 523 (721)
. ......+.|+|. ...|++.++. -...-+++.||..+.++. .......|..+...+..++|+|. |+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e--~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE--DAPHLNKVKIYEYNENGR-KWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEccc--CCccccceEEEEecCCcc-eeeeehhcCCCCCcceeeeeccccCCc
Confidence 1 123456788763 4567777653 112346788998887663 11233345555567888999997 33
Q ss_pred --EEEEEEeeCCceeEEEEECCCCc------------------ccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 524 --WIVFRSTRTGYKNLYIMDAEGGE------------------GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 524 --~l~~~s~~~g~~~l~~~d~~~g~------------------~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.|++++. ++ |++|.+.... ...+..+..+...+..+.|.--|..|..++.++
T Consensus 239 y~~lAvA~k---Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 239 YHLLAVATK---DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred eeeEEEeec---Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 3444443 32 6666665211 011223344555667777777777666666653
No 274
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.67 E-value=0.0044 Score=67.42 Aligned_cols=264 Identities=14% Similarity=0.072 Sum_probs=146.1
Q ss_pred cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeec----cc
Q 004971 291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR----FV 366 (721)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~----~~ 366 (721)
..-+|.+..+. .+.........+..+.|+| ....++.. |..+++|.+||+..+....... ..
T Consensus 223 ~~~vW~~~~p~---------~Pe~~~~~~s~v~~~~f~p-~~p~ll~g----G~y~GqV~lWD~~~~~~~~~s~ls~~~~ 288 (555)
T KOG1587|consen 223 VLLVWSLKNPN---------TPELVLESPSEVTCLKFCP-FDPNLLAG----GCYNGQVVLWDLRKGSDTPPSGLSALEV 288 (555)
T ss_pred eEEEEecCCCC---------CceEEEecCCceeEEEecc-CCcceEEe----eccCceEEEEEccCCCCCCCcccccccc
Confidence 34566555443 4555544445567788888 55445443 3455669999998776421111 12
Q ss_pred CCCCcccCcEEcCCC--CEEEEEEeeCCCCCCCCcceeEEEec-cCCCCccee-----------cccCCCCceeCcCCCE
Q 004971 367 SPKTHHLNPFISPDS--SRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISL-----------FRFDGSFPSFSPKGDR 432 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg--~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-----------~~~~~~~~~~SpDG~~ 432 (721)
.|...+..+.|-.+- ..++..+.++.. ..|..+. ..+...+.. .......+.|.+..-.
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i-------~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSI-------CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcE-------eeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 233444455564433 336655555542 2221111 111000000 0011223445443322
Q ss_pred -EEEE-eCCcEEEEECCCCceEE------Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 433 -IAFV-EFPGVYVVNSDGSNRRQ------VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 433 -la~~-~~~~l~v~d~~~g~~~~------l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
+++. ..+.|+...-.+.+... +. .+.+..+.++|=+..++.++ .+-.++||.-.....
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~~~~-- 432 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDVIAS-- 432 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee-------ccceeEeccccCCCC--
Confidence 2222 35666665544433222 11 56677888999888887775 467889998774332
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
....+......+...+|||---.+.+..+. ++.|.+||+.......+..............|++.|+.|+++...+
T Consensus 433 --Pl~~~~~~~~~v~~vaWSptrpavF~~~d~--~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 433 --PLLSLDSSPDYVTDVAWSPTRPAVFATVDG--DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred --cchhhhhccceeeeeEEcCcCceEEEEEcC--CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence 333333333457789999986666655543 5679999987554322333322233446788999999999888875
Q ss_pred CCCCCceeEEEEecCC
Q 004971 580 NPGSGSFEMYLIHPNG 595 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~ 595 (721)
+++++++..
T Consensus 509 -------~~~~~~l~~ 517 (555)
T KOG1587|consen 509 -------TTHILKLSE 517 (555)
T ss_pred -------cEEEEEcCc
Confidence 788888754
No 275
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.017 Score=53.92 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=85.7
Q ss_pred CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEE-cCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVW-DPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~-spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..+.+.|....|.++ +++.+|.||+++|+.++.. ...+..++- +..++ ++.. .+++.++||+.....
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG-------~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSG-------AEDGTVRVWDTKTQK 189 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeec-------CCCccEEEEeccccc
Confidence 345667777777777 6889999999999987766 334444444 33333 3333 268999999998765
Q ss_pred CCCccceEEcccCC-CCCcce-------EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971 497 VDGVSAVRRLTTNG-KNNAFP-------SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 497 ~~~~~~~~~l~~~~-~~~~~~-------~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD 568 (721)
.+..+.... .....| +..-+..||++.. ...+-+|++...+. ..+..-+..+..+.|-.|
T Consensus 190 -----~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg----Gp~lslwhLrsse~---t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 190 -----HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG----GPKLSLWHLRSSES---TCVFPIPARVHLVDFVDD 257 (325)
T ss_pred -----eeEEeccccChhhcCcccCceeEEEeccCceEEecC----CCceeEEeccCCCc---eEEEecccceeEeeeecc
Confidence 444444322 122222 2333455555544 57899999998885 333333344466777644
Q ss_pred CCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 569 GEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
.++..... +.+-.|.+.+
T Consensus 258 --~vl~~G~g-------~~v~~~~l~G 275 (325)
T KOG0649|consen 258 --CVLIGGEG-------NHVQSYTLNG 275 (325)
T ss_pred --eEEEeccc-------cceeeeeecc
Confidence 44444422 2566666644
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.66 E-value=0.13 Score=55.15 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=54.1
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
.++.+|++.+. +..|+.+|..+|+. +-.... .......|... +..|++...++ .|+.+|.++|+.
T Consensus 292 ~~~~~vy~~~~---~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G-------~l~~ld~~tG~~ 357 (394)
T PRK11138 292 VDGGRIYLVDQ---NDRVYALDTRGGVE--LWSQSDLLHRLLTAPVLY--NGYLVVGDSEG-------YLHWINREDGRF 357 (394)
T ss_pred EECCEEEEEcC---CCeEEEEECCCCcE--EEcccccCCCcccCCEEE--CCEEEEEeCCC-------EEEEEECCCCCE
Confidence 35677887775 67899999999873 211111 11122344443 45677777664 799999999876
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.--...........|.+. + ..|++.+.++
T Consensus 358 ~~~~~~~~~~~~s~P~~~-~-~~l~v~t~~G 386 (394)
T PRK11138 358 VAQQKVDSSGFLSEPVVA-D-DKLLIQARDG 386 (394)
T ss_pred EEEEEcCCCcceeCCEEE-C-CEEEEEeCCc
Confidence 533322112233445553 3 3666665544
No 277
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.64 E-value=0.017 Score=65.43 Aligned_cols=215 Identities=18% Similarity=0.222 Sum_probs=123.2
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-----CCcEEEEEC
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNS 446 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-----~~~l~v~d~ 446 (721)
+..+.++|+++.+++...............+|+.+... ............+.|||||+.+++.. ...+++++.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~ 92 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDV 92 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEec
Confidence 34567788888888876542222122224466654332 11222233455689999999999985 456888887
Q ss_pred CCCceEEEeecCceeeEEcCCCCeEEEEecCCCC-----------------CCCC-CcEEEEEEEccCCCCccceEEccc
Q 004971 447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF-----------------ASES-SEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 447 ~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~-----------------~~~~-~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
. + ........+....|+|+|+.+++....... .... ....+|.++..+ ....+..
T Consensus 93 ~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-----~~~~~~~ 165 (620)
T COG1506 93 G-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-----KLIKLGL 165 (620)
T ss_pred C-C-ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-----ccccccC
Confidence 7 4 223335677889999999999994311100 0111 234444444321 2222333
Q ss_pred CCCCCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC-CCC
Q 004971 509 NGKNNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN-PGS 583 (721)
Q Consensus 509 ~~~~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~ 583 (721)
.......+.+.++++.++....... ....+++...++. +..++.....+..+.|.+||+.+++...... ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~ 242 (620)
T COG1506 166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE---LESLTPGEGSISKLAFDADGKSIALLGTESDRGLA 242 (620)
T ss_pred CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc---eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCcc
Confidence 3344455666666777766654332 1233344334555 6777777666788999999998888776543 222
Q ss_pred CceeEEEEecCCCce
Q 004971 584 GSFEMYLIHPNGTGL 598 (721)
Q Consensus 584 ~~~~i~~~d~~~~~~ 598 (721)
....+++++...++.
T Consensus 243 ~~~~~~~~~~~~~~~ 257 (620)
T COG1506 243 EGDFILLLDGELGEV 257 (620)
T ss_pred ccceEEEEecccccc
Confidence 344566766334433
No 278
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.60 E-value=0.0063 Score=68.36 Aligned_cols=142 Identities=10% Similarity=0.156 Sum_probs=85.8
Q ss_pred CceEEEEeecCCCcceeEEeccCCCCCCCCceeee-ccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCc
Q 004971 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKI-TDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPL 107 (721)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (721)
...|+|+..-+ +.|.+.+.++ .+++.+ +.+...+..|+|||||+
T Consensus 318 ~tkiAfv~~~~----~~L~~~D~dG----~n~~~ve~~~~~~i~sP~~SPDG~--------------------------- 362 (912)
T TIGR02171 318 KAKLAFRNDVT----GNLAYIDYTK----GASRAVEIEDTISVYHPDISPDGK--------------------------- 362 (912)
T ss_pred eeeEEEEEcCC----CeEEEEecCC----CCceEEEecCCCceecCcCCCCCC---------------------------
Confidence 35788886522 2789998888 889989 88889999999999999
Q ss_pred eEEE-Eeeec--CCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEec
Q 004971 108 QLIY-VTERN--GTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVST 184 (721)
Q Consensus 108 ~~~~-~~~~~--g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~ 184 (721)
+|+| ++-.. |.+.||+.++..... ..-+ |.-.. .-++ .| .+++.- .-.|+|+++
T Consensus 363 ~vAY~ts~e~~~g~s~vYv~~L~t~~~--~~vk--l~ve~----aaip-----------rw-rv~e~g---dt~ivyv~~ 419 (912)
T TIGR02171 363 KVAFCTGIEGLPGKSSVYVRNLNASGS--GLVK--LPVEN----AAIP-----------RW-RVLENG---DTVIVYVSD 419 (912)
T ss_pred EEEEEEeecCCCCCceEEEEehhccCC--CceE--eeccc----cccc-----------ce-EecCCC---CeEEEEEcC
Confidence 9999 65554 688899988764330 0222 33111 1111 57 444333 234788887
Q ss_pred CCCCCCC-CCccceEEEEeCCC---cceEeecCCCCCccccccCCCCCEEE
Q 004971 185 HENPGTP-RTSWAAVYSTELKT---GLTRRLTPYGVADFSPAVSPSGKYTA 231 (721)
Q Consensus 185 ~~~~~~~-~~~~~~l~~v~~~~---g~~~~lt~~~~~~~~p~~SPDG~~la 231 (721)
.+.+... .......|.|.-.. |+++.|-. +..+. -+|.|.+..+
T Consensus 420 a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~d-ga~hg--gvs~~~~lav 467 (912)
T TIGR02171 420 ASNNKDDATFAAYSTWQVPFANGKFGTPKKLFD-GAYHG--GVSEDLNLAV 467 (912)
T ss_pred CCCCcchhhhhhcceEEEEecCCCCCCchhhhc-ccccc--ccccCCceee
Confidence 7664421 00123567777554 45666632 22222 3565554433
No 279
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.59 E-value=0.016 Score=58.77 Aligned_cols=235 Identities=12% Similarity=0.088 Sum_probs=138.4
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCce----EEeec---------------ccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKF----IELTR---------------FVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l~~---------------~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
.|+++|..+. +..|.+||+.--.. ..|.. ..+|...+..++|...-+.|++.....
T Consensus 191 ~gNyvAiGtm-----dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTM-----DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEecc-----CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 4678888543 34699999863211 11110 011222234566766666665533322
Q ss_pred CCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCc--eEEE-eecCceeeEE
Q 004971 392 GSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSN--RRQV-YFKNAFSTVW 464 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~--~~~l-~~~~~~~~~~ 464 (721)
..+.++++..+ ...+......+..+.|+|..-.+... + ++.+.+.|..... .... +.+.+..+.|
T Consensus 266 --------~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 266 --------KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred --------ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 24666676655 33344445556778998876555444 3 7888888886311 1222 2678889999
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
.|.....++++ .+++.++-+++...+. .+..+..|...+..+.+++.-..++..... +..+.+|++..
T Consensus 338 ~~~se~~f~~~------tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~--d~~Vklw~~~~ 405 (463)
T KOG0270|consen 338 DPHSENSFFVS------TDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNIQTPGLLSTAST--DKVVKLWKFDV 405 (463)
T ss_pred cCCCceeEEEe------cCCceEEeeecCCCCC----ceeEEEeccCCcceEEecCCCCcceeeccc--cceEEEEeecC
Confidence 99999888887 4677777777766554 677788888888999998887776665433 55666666654
Q ss_pred CcccceEECcCCCcCceeeEEccCCCEE-EEEEccCCCCCCceeEEEEecCCCc
Q 004971 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWI-AFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 545 g~~~~~~~l~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
..++.+..-...-+.....++.|+--.+ +++... ..+.+||+.+..
T Consensus 406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k-------~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK-------AVLRVWDIFTNS 452 (463)
T ss_pred CCCcccccccccccceeecccCCCcceEEEecCcc-------ceEEEeecccCh
Confidence 4421111111111223445666765433 333333 268899987654
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.59 E-value=0.042 Score=53.05 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=89.5
Q ss_pred CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEeec---------CceeeEEcC-----C-CCeEEEEecCCCCCCCCC
Q 004971 422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFK---------NAFSTVWDP-----V-REAVVYTSGGPEFASESS 485 (721)
Q Consensus 422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~---------~~~~~~~sp-----d-g~~la~~~~~~~~~~~~~ 485 (721)
+.++||||+..||++ +.+.|.++|+.+.+...|... .+..+.|-+ + ...|++.. -.+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-------Y~G 119 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-------YRG 119 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-------ccc
Confidence 347999999999999 688999999998776555411 111222211 1 11222221 234
Q ss_pred cEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeCCc--------eeEEEEECCCCccc------
Q 004971 486 EVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTGY--------KNLYIMDAEGGEGY------ 548 (721)
Q Consensus 486 ~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g~--------~~l~~~d~~~g~~~------ 548 (721)
.++-|.+.........+...+.- ....+....|+|.-+.|++++..... ..|..|.+-++.+.
T Consensus 120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 44444443321111112222222 23456678899988877776543211 13444433222210
Q ss_pred ------------ceEECc---------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 549 ------------GLHRLT---------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 549 ------------~~~~l~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
...++. .....+..+..||||+.|+.....+ .|.+|++-+-..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG-------~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG-------SLSLWEIPSLRLQ 264 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC-------eEEEEecCcchhh
Confidence 001111 1122356789999999999999886 8999998765433
No 281
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.53 E-value=0.013 Score=62.15 Aligned_cols=140 Identities=12% Similarity=0.165 Sum_probs=93.1
Q ss_pred CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCc--EEEEEEEccCCCCccceEEcc--c-
Q 004971 438 FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSE--VDIISINVDDVDGVSAVRRLT--T- 508 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~l~--~- 508 (721)
...+.++.+.+++...+. ........||-...+.+++.....-..+... ..+|.+..+ +++++. .
T Consensus 183 raNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~------klqrvsvtsi 256 (545)
T PF11768_consen 183 RANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN------KLQRVSVTSI 256 (545)
T ss_pred hccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC------ceeEEEEEEE
Confidence 456888888887766554 5667788888744444444321111112223 344544432 233222 1
Q ss_pred -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
....+...+++|+.++|+.... ++.|.+||...+. ............++|.|||..+++++.++ .
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qG-------e 322 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCE---DGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQG-------E 322 (545)
T ss_pred ecCCcceEEecCcccceEEEEec---CCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCc-------e
Confidence 2246777899999999999998 8899999997653 44445555668899999999999998876 8
Q ss_pred EEEEecCCCc
Q 004971 588 MYLIHPNGTG 597 (721)
Q Consensus 588 i~~~d~~~~~ 597 (721)
|.+||++-+.
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 9999987654
No 282
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.033 Score=54.00 Aligned_cols=239 Identities=12% Similarity=0.059 Sum_probs=132.9
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc------eecccCCCCceeC-c-CCCEEEEEe-CC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI------SLFRFDGSFPSFS-P-KGDRIAFVE-FP 439 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~S-p-DG~~la~~~-~~ 439 (721)
..-+.++.|.+-|++++..+.+.. ..+| ++..+.... .......-.+.|. | =|+.+|.++ +.
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~-------vkI~--d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQT-------VKIW--DSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cceeeeeeecccCceeeeccCCCc-------EEEE--eccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 334556788888999998877766 3333 432221111 1111222224453 2 277788875 77
Q ss_pred cEEEEECC-----C--CceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCC----Ccc
Q 004971 440 GVYVVNSD-----G--SNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVD----GVS 501 (721)
Q Consensus 440 ~l~v~d~~-----~--g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~ 501 (721)
.+.+|.-. . .+-...+ ...+.++.|.|- |-.|+.++ .++.++||....-... -..
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-------aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-------ADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-------cCcEEEEEecCCccccccchhhh
Confidence 88888652 1 1111121 356778888885 55566554 5788999876432210 000
Q ss_pred ceEEcccC----CCCCcceEEccC---CCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccC-C
Q 004971 502 AVRRLTTN----GKNNAFPSVSPD---GKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-G 569 (721)
Q Consensus 502 ~~~~l~~~----~~~~~~~~~SpD---g~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-G 569 (721)
+...+... ......+.|.|. ...|++.++.+ +...||-++-.+.+...+..|......+..++|+|. |
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 11111111 123344577753 34677777642 234566666555454446667777777899999997 4
Q ss_pred C---EEEEEEccCCCCCCceeEEEEecCCC------------------ceEEee-ecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 570 E---WIAFASDRDNPGSGSFEMYLIHPNGT------------------GLRKLI-QSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 570 ~---~l~~~~~~~~~~~~~~~i~~~d~~~~------------------~~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
+ .||++..+ .|++|.+... ...++. ...|.+.+..+.|.--|..|..++.
T Consensus 237 r~y~~lAvA~kD--------gv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 237 RSYHLLAVATKD--------GVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred CceeeEEEeecC--------cEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 4 45555544 2666665421 011111 1136677888899888998887777
Q ss_pred cCCC
Q 004971 628 YGGI 631 (721)
Q Consensus 628 ~~~~ 631 (721)
++..
T Consensus 309 DG~V 312 (361)
T KOG2445|consen 309 DGCV 312 (361)
T ss_pred Ccee
Confidence 7653
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.48 E-value=0.034 Score=54.70 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=64.7
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC---------ceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS---------DTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~---------~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
....+++.+++... ...|+.+|+.+|+..-...+...... ...+.++ ++ .+++...+. .
T Consensus 117 ~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g-------~ 184 (238)
T PF13360_consen 117 SPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG-------R 184 (238)
T ss_dssp EEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS-------S
T ss_pred CceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC-------e
Confidence 44445788887775 67899999999985111223221110 1223333 44 666666553 3
Q ss_pred EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
++.+|+.+++.. ... .... .......++..|++.+ ..+ .|+++|+.+|+..
T Consensus 185 ~~~~d~~tg~~~-w~~--~~~~-~~~~~~~~~~~l~~~~-~~~----------------~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 185 VVAVDLATGEKL-WSK--PISG-IYSLPSVDGGTLYVTS-SDG----------------RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE-EEE--CSS--ECECEECCCTEEEEEE-TTT----------------EEEEEETTTTEEE
T ss_pred EEEEECCCCCEE-EEe--cCCC-ccCCceeeCCEEEEEe-CCC----------------EEEEEECCCCCEE
Confidence 666799998744 222 1111 1222567888888877 332 5999999999764
No 284
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.46 E-value=0.00012 Score=48.80 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=30.4
Q ss_pred eeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeec--CCceeEE
Q 004971 61 IKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERN--GTSNIYY 123 (721)
Q Consensus 61 ~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~ 123 (721)
+|++.....+..|.|||||+ +|+|++.+. |..+||.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk---------------------------~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGK---------------------------YIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSS---------------------------EEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCC---------------------------EEEEEecCCCCCCcCEEC
Confidence 57888888889999999999 999999998 8888885
No 285
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.45 E-value=0.00026 Score=47.19 Aligned_cols=36 Identities=39% Similarity=0.749 Sum_probs=28.6
Q ss_pred EEcccCCCCCcceEEccCCCEEEEEEeeC--CceeEEE
Q 004971 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYI 539 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~ 539 (721)
++++........++|||||++|+|.+.+. +..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666666788899999999999999988 7778875
No 286
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.41 E-value=0.00094 Score=67.74 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=133.7
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN 450 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~ 450 (721)
...+.++.+|++|++....+- +-..|..+... .-......+..+.|-.+.+++|++...-+|+||-.|-+
T Consensus 132 PY~~~ytrnGrhlllgGrKGH---------lAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGH---------LAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccc---------eeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE
Confidence 345778899999988654443 22222222210 00111223455677777888888888899999988876
Q ss_pred eEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971 451 RRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529 (721)
Q Consensus 451 ~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s 529 (721)
..-|. ...+..+.|-|--=.|+.++ ..+...-.++.... .+..+....+....+.-.|-+.-+-...
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~-------~~G~L~Y~DVS~Gk-----lVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAAS-------EAGFLKYQDVSTGK-----LVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecc-------cCCceEEEeechhh-----hhHHHHccCCccchhhcCCccceEEEcC
Confidence 65554 45666777777654444443 33444444444432 3333444444444555566555444333
Q ss_pred eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971 530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 609 (721)
. +..+-+|.+...++ +..+..+.+.+.++++.++|++++.+..+. .+.+||+..-. ++........
T Consensus 271 s---nGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-------~~kIWDlR~~~--ql~t~~tp~~ 336 (545)
T KOG1272|consen 271 S---NGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDR-------KVKIWDLRNFY--QLHTYRTPHP 336 (545)
T ss_pred C---CceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeeccccc-------ceeEeeecccc--ccceeecCCC
Confidence 3 67899999998876 777778888899999999999999999885 89999997643 2221112234
Q ss_pred cCCeEECCCCC
Q 004971 610 ANHPYFSPDGK 620 (721)
Q Consensus 610 ~~~~~~SpDG~ 620 (721)
...+++|.-|-
T Consensus 337 a~~ls~Sqkgl 347 (545)
T KOG1272|consen 337 ASNLSLSQKGL 347 (545)
T ss_pred ccccccccccc
Confidence 56678886543
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.40 E-value=0.059 Score=51.30 Aligned_cols=156 Identities=9% Similarity=0.029 Sum_probs=104.4
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
...+++|+|+++++.++ ..+++.|.++... ...+. ....+...||.....+|++. .++...||++.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-------Qdg~~~I~DVR 233 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-------QDGTCAIYDVR 233 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-------cCCcEEEEEec
Confidence 44579999999999985 5678888886443 22233 34566788999998888886 57999999997
Q ss_pred ccCCCCccceEEcc----cCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCC------cCcee
Q 004971 494 VDDVDGVSAVRRLT----TNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP------WSDTM 562 (721)
Q Consensus 494 ~~~~~~~~~~~~l~----~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~------~~~~~ 562 (721)
-.+. .....+ .+.+......|||-|- -|+|.++. ...+.+.|..++...++..+.... ..+..
T Consensus 234 ~~~t----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh--fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifg 307 (344)
T KOG4532|consen 234 NMAT----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH--FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFG 307 (344)
T ss_pred cccc----chhhhcccCCCCCCceEEEEecCCCcceEEEEecC--cceEEEEEcccCceeeEEecCcccccccccccccc
Confidence 6553 222222 2336677789998654 24455442 567888999888754444444332 22455
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
-.|+.++..+.+.... +++-|++.+..
T Consensus 308 t~f~~~n~s~~v~~e~--------~~ae~ni~srs 334 (344)
T KOG4532|consen 308 TNFNNENESNDVKNEL--------QGAEYNILSRS 334 (344)
T ss_pred ccccCCCcccccccch--------hhheeeccccc
Confidence 6778788777766655 67778776643
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.39 E-value=0.0046 Score=61.95 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=93.2
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
....+|.++.||.+. ......++.+..... ..+...............+-.+...+.+....+....+.++
T Consensus 67 ~~~~s~~~~llAv~~-------~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVAT-------SSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccCCCceEEEEEe-------CCCceEEEEEecCCC--cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 445566777777664 234444555444321 00111111222344556666666777666553333455555
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
....+. ...+..+...+..++||||+++|+++..++ .|++-....--...-...+|...+..++.-++ .
T Consensus 138 s~~~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDE-------kIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~ 206 (390)
T KOG3914|consen 138 SADSGR---CEPILGHVSMLLDVAVSPDDQFIITADRDE-------KIRVSRYPATFVIESFCLGHKEFVSTISLTDN-Y 206 (390)
T ss_pred cccccC---cchhhhhhhhhheeeecCCCCEEEEecCCc-------eEEEEecCcccchhhhccccHhheeeeeeccC-c
Confidence 555454 556666767788999999999998888775 66665543322222222246677888888755 4
Q ss_pred EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
.|+..+.++ .|++||..+|+.
T Consensus 207 ~LlS~sGD~-----------------tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 207 LLLSGSGDK-----------------TLRLWDITSGKL 227 (390)
T ss_pred eeeecCCCC-----------------cEEEEecccCCc
Confidence 455555554 499999887754
No 289
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.024 Score=59.73 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=73.8
Q ss_pred eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccC
Q 004971 503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
...++.+. +.+....++.+-..|+..+. +.++..|+...+. +..+- .....+..+..+|||+.|+.++.
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~a---d~~v~~~~~~~~~---~~~~~~~~~~~~~sl~is~D~~~l~~as~-- 164 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGA---DLKVVYILEKEKV---IIRIWKEQKPLVSSLCISPDGKILLTASR-- 164 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCC---ceeEEEEecccce---eeeeeccCCCccceEEEcCCCCEEEeccc--
Confidence 34454332 45555566666555655554 7788899988776 33333 33445678999999998887774
Q ss_pred CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC-----CCEEEE
Q 004971 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD-----GKSIVF 624 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD-----G~~l~~ 624 (721)
+|.+||+.+++...-+. +|.+.+..++|.-+ |+++..
T Consensus 165 -------~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 165 -------QIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred -------eEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeee
Confidence 69999999988776654 48888899988777 666544
No 290
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.017 Score=57.67 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=98.0
Q ss_pred CcEEEEECCCCceEEEe--------------ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971 439 PGVYVVNSDGSNRRQVY--------------FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--------------~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
..+.+||+.+.+ ++. +-.+.++.|-+. ...++.++ ..+.+++|+...+.. .
T Consensus 173 n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hqvR~YDt~~qRR----P 239 (412)
T KOG3881|consen 173 NELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQVRLYDTRHQRR----P 239 (412)
T ss_pred cceeeeecccce--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------cceeEEEecCcccCc----c
Confidence 578999998773 333 123456677766 66666665 568889998876543 4
Q ss_pred eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 503 ~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
+..+........+....|+|++|+++.. ..+|..+|+.++.. +.. +..-.+.+..+...|.++.|+.++-+.
T Consensus 240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDR-- 312 (412)
T KOG3881|consen 240 VAQFDFLENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDR-- 312 (412)
T ss_pred eeEeccccCcceeeeecCCCcEEEEecc---cchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccce--
Confidence 5555555567788899999999998877 67899999998873 333 233356678899999999999998874
Q ss_pred CCCceeEEEEecCCC
Q 004971 582 GSGSFEMYLIHPNGT 596 (721)
Q Consensus 582 ~~~~~~i~~~d~~~~ 596 (721)
.|.++|+.+.
T Consensus 313 -----yvRIhD~ktr 322 (412)
T KOG3881|consen 313 -----YVRIHDIKTR 322 (412)
T ss_pred -----eEEEeecccc
Confidence 8999999883
No 291
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.057 Score=57.03 Aligned_cols=134 Identities=13% Similarity=0.138 Sum_probs=89.3
Q ss_pred eCCcEEEEECCCCceEE-Ee----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971 437 EFPGVYVVNSDGSNRRQ-VY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511 (721)
Q Consensus 437 ~~~~l~v~d~~~g~~~~-l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 511 (721)
..+.++++++.+|+... +. .+.+..+.|+.+-..|+.+. .+..+..|...... ..+.......
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~-------ad~~v~~~~~~~~~-----~~~~~~~~~~ 145 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG-------ADLKVVYILEKEKV-----IIRIWKEQKP 145 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC-------CceeEEEEecccce-----eeeeeccCCC
Confidence 47789999998888543 33 34556666666665565543 34555555544321 2233333445
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC-----CCEEEEEEccCCCCCCce
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-----GEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~~~ 586 (721)
.+....++|||+.|+.++ .+|-+||.++++. +...+.+...+..++|--+ |++++....-. ...
T Consensus 146 ~~~sl~is~D~~~l~~as-----~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~----r~i 214 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS-----RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE----RGI 214 (541)
T ss_pred ccceEEEcCCCCEEEecc-----ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccc----cce
Confidence 678899999999998876 4799999999986 7778888888888888776 77776655432 334
Q ss_pred eEEEEec
Q 004971 587 EMYLIHP 593 (721)
Q Consensus 587 ~i~~~d~ 593 (721)
.++..+-
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 5555554
No 292
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.19 E-value=0.0036 Score=59.13 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred CCCEEEEE---eCCcEEEEECCCCce-EEEe------------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 429 KGDRIAFV---EFPGVYVVNSDGSNR-RQVY------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 429 DG~~la~~---~~~~l~v~d~~~g~~-~~l~------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
+++++... ..+.+.+||+.++.. .++. .+.+.++.+.+.-.+=+. .....+.-.|.+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis-------gga~dkl~~~Sl 234 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS-------GGADDKLVMYSL 234 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC-------CCccccceeeee
Confidence 45554443 477899999988732 1111 233344444322111111 012455666777
Q ss_pred EccCCC-CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971 493 NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571 (721)
Q Consensus 493 ~~~~~~-~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~ 571 (721)
+-..+. .-.....+.. -.+....+-||+|-++.+.. +.+|++++..+..+ +..|..+...++.++|+||-..
T Consensus 235 ~~s~gslq~~~e~~lkn--pGv~gvrIRpD~KIlATAGW---D~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKN--PGVSGVRIRPDGKILATAGW---DHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred ccccCcccccceEEecC--CCccceEEccCCcEEeeccc---CCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCch
Confidence 655321 0111122222 24567889999999999988 78899999988886 7777778888899999999888
Q ss_pred EEEEEccCCCCCCceeEEEEec
Q 004971 572 IAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
+|.++.+. +|-+|++
T Consensus 308 mAaaskD~-------rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDA-------RISLWKL 322 (323)
T ss_pred hhhccCCc-------eEEeeec
Confidence 88888775 7888875
No 293
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.14 E-value=0.017 Score=64.74 Aligned_cols=178 Identities=15% Similarity=0.038 Sum_probs=115.3
Q ss_pred eCcCCCEEEEE-eCCcEEEEECCCCce-EEEe-ec-----CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 426 FSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY-FK-----NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 426 ~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~-~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
+.-+.++++.. ..+.+.++|...+.. ..+. .. ...-...+++.-+++..+ --+.+.+|....+.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs-------v~~~iivW~~~~dn- 166 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS-------VFGEIIVWKPHEDN- 166 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc-------ccccEEEEeccccC-
Confidence 34445566665 578889998876542 2222 11 111233445544555443 34678888877433
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEE
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~ 576 (721)
...++..+.+....+.||-||++++..++ ++.+.+|++++++. +. ....+...+....|.|. .|+..+
T Consensus 167 ----~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~--~~~~~fgHsaRvw~~~~~~n--~i~t~g 235 (967)
T KOG0974|consen 167 ----KPIRLKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREV--LGCTGFGHSARVWACCFLPN--RIITVG 235 (967)
T ss_pred ----CcceecccCCceEEEEEccCCcEEEEEec---Ccceeeeecccccc--cCcccccccceeEEEEeccc--eeEEec
Confidence 44478888999999999999999999998 88999999998874 22 33456667888999998 777777
Q ss_pred ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.+- ..++|+.++.+....... ....+..++..++.-.++...++++
T Consensus 236 edc-------tcrvW~~~~~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 236 EDC-------TCRVWGVNGTQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred cce-------EEEEEecccceehhhhhh-hhcceeEEEEcCCceEEEeeccCcc
Confidence 764 788887776555433221 2234556666655554555455544
No 294
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.1 Score=52.10 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=104.7
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
...||.+++.+++ ...+....+|.+... +...+.++.++..+ ...+..++|.- ..++ +|. |....+
T Consensus 61 AlqFS~N~~~L~S--GGDD~~~~~W~~de~----~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~-~~S----G~~~~~ 128 (609)
T KOG4227|consen 61 ALQFSHNDRFLAS--GGDDMHGRVWNVDEL----MVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRF-LYS----GERWGT 128 (609)
T ss_pred eeeeccCCeEEee--cCCcceeeeechHHH----HhhcCCCCceeccCccccceEEEEEcc-CCee-Eec----CCCcce
Confidence 3478888887773 333667778855322 11112245555544 34566777865 4444 442 445667
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---ccc--CCCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRF--DGSF 423 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~--~~~~ 423 (721)
+.+.|+++.+..-+.......+.+.....+|-...++..+..+. +.++++......+.. ... .-..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~---------V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL---------VSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCce---------EEEEeccCCCCCCceeeecCCCcccee
Confidence 88999999886555554444567788888998777777665544 444554433211111 111 1122
Q ss_pred ceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-------ec---CceeeEEcCCCCeEEEEe
Q 004971 424 PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-------FK---NAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 424 ~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-------~~---~~~~~~~spdg~~la~~~ 475 (721)
..|+|-.-.|+.+ ....+-+||..-.....+. .. .-....|+|.|..+....
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 4677776665555 3566777776433211111 11 114578999999887664
No 295
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.04 E-value=0.33 Score=48.05 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=90.5
Q ss_pred ceeCcCCCEEEEEeCCcEEEEECCC--Cce--EEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 424 PSFSPKGDRIAFVEFPGVYVVNSDG--SNR--RQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 424 ~~~SpDG~~la~~~~~~l~v~d~~~--g~~--~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
+.+..|++.+..+.+-.|-+|+++- +.. ..+. ...+++..|+|.-..+++-+ ...+.++|.++
T Consensus 170 IS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS------SSKGtIrLcDm 243 (433)
T KOG1354|consen 170 ISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS------SSKGTIRLCDM 243 (433)
T ss_pred eeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe------cCCCcEEEeec
Confidence 4566777776666666677777652 221 2222 23467788999765544443 36789999988
Q ss_pred EccCC-CCccceEEcccCC----------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEECcCC----
Q 004971 493 NVDDV-DGVSAVRRLTTNG----------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHRLTEG---- 556 (721)
Q Consensus 493 ~~~~~-~~~~~~~~l~~~~----------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~---- 556 (721)
....- +...+.......+ ..+..+.||++|++|+..+ ...|.+||+.- .++ +....-+
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----yltvk~wD~nme~~p--v~t~~vh~~lr 317 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----YLTVKLWDLNMEAKP--VETYPVHEYLR 317 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----cceeEEEeccccCCc--ceEEeehHhHH
Confidence 73221 0000111111111 2456689999999998776 57888999842 222 3222211
Q ss_pred -----------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 557 -----------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 557 -----------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
.+.-....||-+++.+..++... -..+++++.|..+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n-------~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN-------VFRVFNLARGSKE 364 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccc-------eEEEecCCCCcce
Confidence 12235678999998888777653 4556675555433
No 296
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.03 E-value=0.0011 Score=71.96 Aligned_cols=268 Identities=15% Similarity=0.104 Sum_probs=141.5
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
+++..|-..+.-+.|.. .|.+|+. |.++.-+.+|..+++. .+....+|.+.+...+.+-+...++..+.+.-
T Consensus 184 krLlgH~naVyca~fDr-tg~~Iit-----gsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDR-TGRYIIT-----GSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHhhhhheeeeeecc-ccceEee-----cCccceeeeeeccchh--hhccCCCCccccchhccchhhhhhhhcccCce
Confidence 33444443455566877 8888877 4456668899987766 66666778888888888877766666554443
Q ss_pred CCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCe
Q 004971 393 STREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREA 470 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~ 470 (721)
|.++.+..+ ..-+....+.+..++|||-- ....++.+.+||..-. + .++. ...+ +++++.
T Consensus 256 ---------IrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~-~-~~y~--prp~--~~~~~~ 317 (1113)
T KOG0644|consen 256 ---------IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE-P-RIYV--PRPL--KFTEKD 317 (1113)
T ss_pred ---------EEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc-c-cccC--CCCC--Cccccc
Confidence 344444433 22233333344556676632 1123556777765410 0 1110 0000 112222
Q ss_pred EEEE----ecCCCCC--CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 471 VVYT----SGGPEFA--SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 471 la~~----~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
++.. ..+..+. ..++....|.+..- .-..........+.|-..++.... .+..+..|++.+
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----------~~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQL-----------AWRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYT 384 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHh-----------hhhccceEEEeccccccccceeee--eeeEeeeeeccc
Confidence 2211 1110000 01222222222110 000001111222223333332221 145788899988
Q ss_pred CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 545 g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
|.. ...++.+......+.+.|=...|+...... ....+||+..|.+.+....+ .+....-.||+||+.++.
T Consensus 385 g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 385 GQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred chh--hhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCcceeeecc-cceeeccccCCCCceEec
Confidence 874 444555555556788888877777766543 37889999888776665543 345566789999999887
Q ss_pred EEec
Q 004971 625 TSDY 628 (721)
Q Consensus 625 ~~~~ 628 (721)
....
T Consensus 456 sd~h 459 (1113)
T KOG0644|consen 456 SDDH 459 (1113)
T ss_pred CCCC
Confidence 5443
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.017 Score=61.94 Aligned_cols=268 Identities=12% Similarity=0.122 Sum_probs=133.7
Q ss_pred cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce----EEe---------ecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF----IEL---------TRFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l---------~~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
.-+.|.. ...+|+. |+.++-|.+..+.+... +.+ ..+.+|...+..+.|..+.+.|-. ++
T Consensus 18 ~c~~WNk-e~gyIAc-----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-SD 90 (1189)
T KOG2041|consen 18 HCAEWNK-ESGYIAC-----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-SD 90 (1189)
T ss_pred EEEEEcc-cCCeEEe-----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-cC
Confidence 4556766 6667776 34555577766654321 111 122445556666677766666543 22
Q ss_pred eCCCCCCCCcceeEEEeccCC--CCccee--cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce--EEEeecCceee
Q 004971 390 RGGSTREDGNNQLLLENIKSP--LPDISL--FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR--RQVYFKNAFST 462 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~--~~l~~~~~~~~ 462 (721)
..+ -|.++-+-.+ ...... -..-+..+.|..||++|..+ .++.+.+=.++|... +.+........
T Consensus 91 t~G--------lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 91 TSG--------LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred CCc--------eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 222 1333333222 111110 01123457999999999888 577777777776542 23333345688
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc--cc-----------eEEcccCCCCCcceE-EccCCCEEEEE
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV--SA-----------VRRLTTNGKNNAFPS-VSPDGKWIVFR 528 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~-----------~~~l~~~~~~~~~~~-~SpDg~~l~~~ 528 (721)
.||+|.+.++|.. .+++.+||+...+-...- .. ..++........... .-||--.|++.
T Consensus 163 ~ws~D~~~~Lf~~-------ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 163 LWSEDLEQALFKK-------ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred eecccHHHHHhhh-------cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence 9999999888764 457777776543211000 00 011111110111111 22466666655
Q ss_pred EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEeeecCC
Q 004971 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLIQSGS 606 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~ 606 (721)
-. .|..+|.+- .+..+ +..+..+ ..+....|+++|..|+++..+.+. ......|..|..-+.-...+-. .
T Consensus 236 y~-nGr~QiMR~-eND~~---Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--p 307 (1189)
T KOG2041|consen 236 YA-NGRMQIMRS-ENDPE---PVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--P 307 (1189)
T ss_pred Ec-Cceehhhhh-cCCCC---CeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec--C
Confidence 54 223334332 22223 2333333 445778999999999998876432 1122355555554432222221 2
Q ss_pred CCCcCCeEECCCCC
Q 004971 607 AGRANHPYFSPDGK 620 (721)
Q Consensus 607 ~~~~~~~~~SpDG~ 620 (721)
+..+..++|--.|-
T Consensus 308 g~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 308 GSCITGLSWEGTGL 321 (1189)
T ss_pred CceeeeeEEcCCce
Confidence 23345555544443
No 298
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.01 E-value=0.097 Score=57.23 Aligned_cols=261 Identities=12% Similarity=0.035 Sum_probs=142.0
Q ss_pred eEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc----ceec----c
Q 004971 348 HIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD----ISLF----R 418 (721)
Q Consensus 348 ~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~----~ 418 (721)
.+++|++.... +.... .....+..+.|+|....++......+ ++.++++..+... +... +
T Consensus 223 ~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNG--------QVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred eEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCc--------eEEEEEccCCCCCCCcccccccccCC
Confidence 47899988762 22222 12455777889998877777655554 4677777554321 1110 1
Q ss_pred cCCCCceeCc--CCCEEEEE-eCCcEEEEECCCCce-EEEe--------------ecCceeeEEcCCCCeEEEEecCCCC
Q 004971 419 FDGSFPSFSP--KGDRIAFV-EFPGVYVVNSDGSNR-RQVY--------------FKNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 419 ~~~~~~~~Sp--DG~~la~~-~~~~l~v~d~~~g~~-~~l~--------------~~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
.......|-. .+..++.. .++.|..|+++.-.. .... ......+.|.+.....+++..
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT---- 367 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT---- 367 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc----
Confidence 1112233422 22223333 477787776653211 1000 123456777775554444431
Q ss_pred CCCCCcEEEEEEEccCCCCcc-----ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECc
Q 004971 481 ASESSEVDIISINVDDVDGVS-----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLT 554 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~ 554 (721)
+. ..|+.....+..... .......+.+.+....++|=+..++.... +..+.+|.-. ...+ +..+.
T Consensus 368 --e~--G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~P--l~~~~ 438 (555)
T KOG1587|consen 368 --EE--GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASP--LLSLD 438 (555)
T ss_pred --CC--cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCc--chhhh
Confidence 22 334443332210000 01123334456777788887777766665 7888888765 2221 33333
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISA 633 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 633 (721)
.....+..++|||---.++++.+.. ..|++||+.-.....+... ........+.|+++|+.|+.....+
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~------G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G---- 508 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGD------GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG---- 508 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCC------CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC----
Confidence 3334478899999866555555432 3899999966544333221 1233456788999999998766655
Q ss_pred CCCCCCCCCCCCccEEEEEcCC
Q 004971 634 EPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+++++++..
T Consensus 509 -------------~~~~~~l~~ 517 (555)
T KOG1587|consen 509 -------------TTHILKLSE 517 (555)
T ss_pred -------------cEEEEEcCc
Confidence 488888743
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.7 Score=49.41 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 429 KGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 429 DG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
++.+|++. .++.|+.+|..+|+...-. ......+.. .+.+|++.. .++. |+.++...+ ...
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~-------~~G~--l~~ld~~tG---~~~ 358 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD-------SEGY--LHWINREDG---RFV 358 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe-------CCCE--EEEEECCCC---CEE
Confidence 35566666 4788999999888753322 111222332 244566554 2343 444554443 122
Q ss_pred EEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 504 RRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 504 ~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
.+.... ......|.+. +.+|++.+. +..||.+++
T Consensus 359 ~~~~~~~~~~~s~P~~~--~~~l~v~t~---~G~l~~~~~ 393 (394)
T PRK11138 359 AQQKVDSSGFLSEPVVA--DDKLLIQAR---DGTVYAITR 393 (394)
T ss_pred EEEEcCCCcceeCCEEE--CCEEEEEeC---CceEEEEeC
Confidence 222111 1223344543 446777765 667887754
No 300
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.049 Score=53.63 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=107.1
Q ss_pred EEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-
Q 004971 432 RIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR- 505 (721)
Q Consensus 432 ~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 505 (721)
.+|+. +.+.+.+||..++...... +.....+.|..+ +-..+++. ..++.+++|++..... ..+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~------ssDG~Vr~wD~Rs~~e----~a~~~ 111 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC------SSDGTVRLWDIRSQAE----SARIS 111 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe------ccCCeEEEEEeecchh----hhhee
Confidence 34444 7889999999887654444 344456666553 44555544 3689999999998763 2222
Q ss_pred cccCCCCCcceEEcc--CCCEEEEEEeeC-CceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCC-EEEEEEccCC
Q 004971 506 LTTNGKNNAFPSVSP--DGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE-WIAFASDRDN 580 (721)
Q Consensus 506 l~~~~~~~~~~~~Sp--Dg~~l~~~s~~~-g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~-~l~~~~~~~~ 580 (721)
.+... ......|.- .++.++...... .+..|++||+...+. .+..+. .+..+++.+.|.|..- .|+.++-++
T Consensus 112 ~~~~~-~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG- 188 (376)
T KOG1188|consen 112 WTQQS-GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG- 188 (376)
T ss_pred ccCCC-CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCCCCeEEeecccc-
Confidence 22222 112223332 455666655433 356899999986541 134443 4566789999999765 455555553
Q ss_pred CCCCceeEEEEecCCCceE-Eeee-cCCCCCcCCeEECCCC-CEEEEEEecCC
Q 004971 581 PGSGSFEMYLIHPNGTGLR-KLIQ-SGSAGRANHPYFSPDG-KSIVFTSDYGG 630 (721)
Q Consensus 581 ~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~~~SpDG-~~l~~~~~~~~ 630 (721)
-+-++|+...... .|.. ..+...+..+.|.-++ +.|+..+...+
T Consensus 189 ------LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et 235 (376)
T KOG1188|consen 189 ------LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET 235 (376)
T ss_pred ------eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc
Confidence 6777787554211 1211 1144557788999888 45777777664
No 301
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.92 E-value=0.28 Score=47.98 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=100.1
Q ss_pred CCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
...++|.||.+.|+.+. ...|+.++.++...+.+. .+....+++.-++++++ +. ...+.+.++.++..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~------Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVL-SE------ERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEE-EE------TTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEE-EE------cCCCcEEEEEEecc
Confidence 34579999988887774 667888998766566665 34556788877775444 43 23456666666544
Q ss_pred CCCC-ccceEEcc--cC---CCCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEE--Cc---CCCcCcee
Q 004971 496 DVDG-VSAVRRLT--TN---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHR--LT---EGPWSDTM 562 (721)
Q Consensus 496 ~~~~-~~~~~~l~--~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~--l~---~~~~~~~~ 562 (721)
+... ....+.+. .. ....-.++|.|.++.|+++.++. ...||-++. .......... +. ........
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeeccccccccccceeccccc
Confidence 3210 01112222 11 12346789999999999887642 346777776 2111100000 11 11233567
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC--------CCCcCCeEECCCCCEEEEEEe
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS--------AGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--------~~~~~~~~~SpDG~~l~~~~~ 627 (721)
+++.|....|++.+... ..|..+|.++ ++........ -.....++|.+||+ ||..+.
T Consensus 176 l~~~p~t~~lliLS~es------~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE 240 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDES------RLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE 240 (248)
T ss_dssp EEEETTTTEEEEEETTT------TEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET
T ss_pred eEEcCCCCeEEEEECCC------CeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC
Confidence 88999988888887664 3789999655 4433322111 12356789999995 555554
No 302
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.0094 Score=62.27 Aligned_cols=241 Identities=12% Similarity=0.048 Sum_probs=134.1
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECC------CCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV------KNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~------tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
+....|.| ....|+.++ .++.|.+|+++ .....++..+..|.+.+.+++++++++.++....++.
T Consensus 297 ir~l~~~~-sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~--- 367 (577)
T KOG0642|consen 297 IRALAFHP-SEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT--- 367 (577)
T ss_pred hhhhhcCC-CCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce---
Confidence 34556666 555555533 44558889882 2334567777888888899999999999998887776
Q ss_pred CCCcceeEEEeccC-------C---CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCce
Q 004971 396 EDGNNQLLLENIKS-------P---LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAF 460 (721)
Q Consensus 396 ~~~~~~l~~~~~~~-------~---~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~ 460 (721)
.+.|-..... + ...+..+......+++|....+|+.+ .++.++.|......+.... .+...
T Consensus 368 ----I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 368 ----IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred ----eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 2333221100 0 01111111222345777777777776 5889999988766652222 22333
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-------CCCcceEEccCCCEEEEEEeeCC
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-------KNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
.+.+....-.+.+++. ..+...++.+.+.. ....+.... .......+.|.+...+..-.
T Consensus 444 svd~~ss~~a~~~~s~------~~~~~~~~~~ev~s-----~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF------RFGYTSIDDMEVVS-----DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred eEeeccchhHhhhhhc------ccccccchhhhhhh-----heeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 3333211111111110 11222222222211 111111110 12233566676654433333
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+..|..+|..+++. +.....+...+..+++.|+|-+|...+.+. .+.+|.++...+
T Consensus 510 d~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~-------sv~l~kld~k~~ 565 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDG-------SVRLWKLDVKTC 565 (577)
T ss_pred CCceeccccccccc--chheeeccceecceeecCCCceEEeecCCc-------eeehhhccchhe
Confidence 67888899888875 444445556678899999999998888775 788887766543
No 303
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.018 Score=59.26 Aligned_cols=284 Identities=11% Similarity=0.062 Sum_probs=148.9
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCC--CEEEEEEeeCC
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS--SRVGYHKCRGG 392 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg--~~l~~~~~~~~ 392 (721)
+..+..-+..+.|.. .|+.|+. ++++..+.+||..+++. .+....+|...+....|-|.. +.|+....++.
T Consensus 138 L~~H~GcVntV~FN~-~Gd~l~S-----gSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ-RGDVLAS-----GSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred ccCCCCccceeeecc-cCceeec-----cCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 444555566778888 8988876 55778899999998864 333334555566666666643 45555444444
Q ss_pred CCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-------e--cC
Q 004971 393 STREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-------F--KN 458 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-------~--~~ 458 (721)
.++-.....+. .+.+........-++.-|+..+-.+. .+..+.-+|+..+.+.... . -.
T Consensus 211 -------vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 211 -------VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred -------eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 22211111111 11222222223334555665444443 3556677777666543322 1 12
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC------CccceEEccc-CCCCCcceEEccCCCEEEEEEee
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD------GVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
...++..|-....+.+.. .+...++|+...-... ....+..|.. ....+..++|+.|+.-|....+
T Consensus 284 L~~Ia~~P~nt~~faVgG------~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn- 356 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGG------SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN- 356 (559)
T ss_pred eeeEecCCCCccccccCC------hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-
Confidence 335556665553333321 2334445543321110 0001122222 2256677899988888877766
Q ss_pred CCceeEEEEECCCCcc----------cceEECcCCC---cCceee-EEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 532 TGYKNLYIMDAEGGEG----------YGLHRLTEGP---WSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~----------~~~~~l~~~~---~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
+..||++...-+.. ..++++..+. ..+..+ -|-|...+++.+++-+ +||+|+-.+++
T Consensus 357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCG-------hIFiW~K~t~e 427 (559)
T KOG1334|consen 357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCG-------HIFIWDKKTGE 427 (559)
T ss_pred --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccc-------eEEEEecchhH
Confidence 67899885432221 0112212221 112233 3678888887777664 89999998887
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..++... ....++.+.-.|---.|+...-+.
T Consensus 428 ii~~Meg-Dr~VVNCLEpHP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 428 IIRFMEG-DRHVVNCLEPHPHLPVLASSGIDH 458 (559)
T ss_pred HHHHhhc-ccceEeccCCCCCCchhhccCCcc
Confidence 7666543 333555555555444555544443
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.90 E-value=0.68 Score=53.63 Aligned_cols=230 Identities=10% Similarity=0.078 Sum_probs=117.4
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF 254 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~ 254 (721)
|+..|.++...| .+..+++.+....-++.-.......+||||++++++++.+ ..|+++
T Consensus 79 d~~~i~v~~~~G----------~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~------------~tll~m 136 (1265)
T KOG1920|consen 79 DTNSICVITALG----------DIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR------------QTLLFM 136 (1265)
T ss_pred ccceEEEEecCC----------cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC------------cEEEEE
Confidence 566677766553 6778888887777776655555666999999999998633 345444
Q ss_pred EcC--CCceeEEEecc--CC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971 255 LTR--DGTQRVKIVEN--GG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327 (721)
Q Consensus 255 d~~--~g~~~~l~~~~--~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (721)
.-. -=..+.+-.+. .+ ...|-...+ -|. .+ .|............ ...++ ...-.-..+.|
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT-qfr-gs--~gr~~~~~~~~~ek--------~~~~~-~~~~~~~~IsW 203 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKET-QFR-GS--EGRQAARQKIEKEK--------ALEQI-EQDDHKTSISW 203 (1265)
T ss_pred eccccchhccccccccccccccceecccccce-eee-cc--hhhhcccccccccc--------cccch-hhccCCceEEE
Confidence 321 01112221000 00 112322111 110 00 11110000000000 00000 01112245788
Q ss_pred ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec
Q 004971 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI 407 (721)
Q Consensus 328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 407 (721)
-- ||++++..........+.|.+||.+ |........ ..+....++|-|.|..++........ ..+.+..-
T Consensus 204 Rg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd------~~IvffEr 273 (1265)
T KOG1920|consen 204 RG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSD------SDIVFFER 273 (1265)
T ss_pred cc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCC------CcEEEEec
Confidence 77 9999887554444444779999987 543222211 12334468999999999887666553 22333322
Q ss_pred cCCCCc-----ceecccCCCCceeCcCCCEEEEE---e-CCcEEEEECCCC
Q 004971 408 KSPLPD-----ISLFRFDGSFPSFSPKGDRIAFV---E-FPGVYVVNSDGS 449 (721)
Q Consensus 408 ~~~~~~-----~~~~~~~~~~~~~SpDG~~la~~---~-~~~l~v~d~~~g 449 (721)
.+-... ..........++|+.++..||.. . ...|.+|....-
T Consensus 274 NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 274 NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 221110 11111124568999999999885 2 445888876543
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.016 Score=62.08 Aligned_cols=183 Identities=13% Similarity=0.122 Sum_probs=104.5
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+.|..+.+.|.... .+-|.+|-+-.|.. ..+. ...+.++.|.-||++|.++- .++.+.+=.++-+.
T Consensus 76 vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-------eDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 76 VVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-------EDGAVIVGSVDGNR 148 (1189)
T ss_pred EEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-------ccCCEEEEeeccce
Confidence 356776666666553 56677776654431 1111 34567899999999999885 45666555544321
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-----EECcCC----CcCceeeEE--
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-----HRLTEG----PWSDTMCNW-- 565 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-----~~l~~~----~~~~~~~~~-- 565 (721)
- .+ +.|. .....++.||+|.+.++|.-. +..+.++|.++.-..++ ...+.. +..+..+.|
T Consensus 149 I--wg--KeLk--g~~l~hv~ws~D~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 149 I--WG--KELK--GQLLAHVLWSEDLEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred e--cc--hhcc--hheccceeecccHHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 0 00 1111 123347899999999988866 56677777664321000 111110 111222222
Q ss_pred ------ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 566 ------SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 566 ------SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
-||--.|+++..++ ..+|.+-. ...++..+ . .+-.+....|+++|..|++...+..
T Consensus 220 g~~~~v~pdrP~lavcy~nG-----r~QiMR~e-ND~~Pvv~-d--tgm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANG-----RMQIMRSE-NDPEPVVV-D--TGMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred CccccCCCCCCEEEEEEcCc-----eehhhhhc-CCCCCeEE-e--cccEeecceecCCCcEEEEccCccc
Confidence 35777888888763 33443322 23333333 2 3456678999999999999887764
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.84 E-value=0.12 Score=59.42 Aligned_cols=192 Identities=14% Similarity=0.224 Sum_probs=113.4
Q ss_pred ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE-------
Q 004971 424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN------- 493 (721)
Q Consensus 424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~------- 493 (721)
+.|-.|+..|.++ ..+.|.+.|..+.....+. ..++..+.||||++.+++++.+ .++.+...+
T Consensus 74 ~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~-------~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 74 VQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR-------QTLLFMTKDFEPIAEK 146 (1265)
T ss_pred EEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC-------cEEEEEeccccchhcc
Confidence 3455556566665 5778888888777655554 6788899999999999998742 111111111
Q ss_pred -c----cCC-----CCcc-ceEEcccC---------------------CCCCcceEEccCCCEEEEEEeeC--CceeEEE
Q 004971 494 -V----DDV-----DGVS-AVRRLTTN---------------------GKNNAFPSVSPDGKWIVFRSTRT--GYKNLYI 539 (721)
Q Consensus 494 -~----~~~-----~~~~-~~~~l~~~---------------------~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~ 539 (721)
+ ... .+++ +.+++... ........|--||+++++..-.. +...|.+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 000 0000 01111100 01223478999999999865432 3478999
Q ss_pred EECCCCcccceEECcCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE--eeecCCCCCcCCeEEC
Q 004971 540 MDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK--LIQSGSAGRANHPYFS 616 (721)
Q Consensus 540 ~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~~~S 616 (721)
||.+ |. +...... .+-...++|-|.|..|+...... ....|..+.-+|-+-.. +........+..++|.
T Consensus 227 ~drE-g~---Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~----sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 227 YDRE-GA---LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT----SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eccc-ch---hhcccCcccccccceeecCCCCeEeeeeecC----CCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 9988 54 2222221 22335799999999999887764 33368888765533221 1111122337889999
Q ss_pred CCCCEEEEEEecCC
Q 004971 617 PDGKSIVFTSDYGG 630 (721)
Q Consensus 617 pDG~~l~~~~~~~~ 630 (721)
.++..|+.......
T Consensus 299 s~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLE 312 (1265)
T ss_pred CCCCceeeeecccc
Confidence 99999988555443
No 307
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.82 E-value=0.0066 Score=57.39 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=50.2
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+..+..-||+|.+|.+..++ +|.+|+-.+..+..+... |...+..++||||-..++.++.+..
T Consensus 254 v~gvrIRpD~KIlATAGWD~-------RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDH-------RIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccceEEccCCcEEeecccCC-------cEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhhhccCCce
Confidence 47788999999999999885 566666677776666654 7788999999999888887777653
No 308
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.80 E-value=0.063 Score=57.47 Aligned_cols=208 Identities=10% Similarity=0.027 Sum_probs=96.3
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEE-ECCC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVV-NSDG 448 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~-d~~~ 448 (721)
....+.++|+|+.++. ..++. ..+...... .......+..++|++.++ +|+. ....|.++ +++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~ge---------Y~iyt~~~~---r~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGE---------YEIYTALAW---RNKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTE---------EEEEETTTT---EEEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred CCeeEEECCCCCEEEE-EcCCE---------EEEEEccCC---cccccCceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 3567889999999888 22222 223321111 111123355678998665 4444 46667774 4433
Q ss_pred CceEEEeec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971 449 SNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527 (721)
Q Consensus 449 g~~~~l~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~ 527 (721)
...+.+... .+..+.. |..|.+.+ ++.+.+|++.... .++++.-. .+..+.||+||+++++
T Consensus 100 ~~~k~i~~~~~~~~If~---G~LL~~~~--------~~~i~~yDw~~~~-----~i~~i~v~--~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG---GNLLGVKS--------SDFICFYDWETGK-----LIRRIDVS--AVKYVIWSDDGELVAL 161 (443)
T ss_dssp -TT-----SS-EEEEE----SSSEEEEE--------TTEEEEE-TTT-------EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred ccceEEcCCcccceEEc---CcEEEEEC--------CCCEEEEEhhHcc-----eeeEEecC--CCcEEEEECCCCEEEE
Confidence 332333322 1222222 87777765 2346677665432 44555432 2577899999999999
Q ss_pred EEeeCCceeEEEEECCCC---------cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 528 RSTRTGYKNLYIMDAEGG---------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~~g---------~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
.+. ..+|+++-+-. -......+.+-...+.+..|.-| -++|+... +|.. +-+|+.
T Consensus 162 ~t~----~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--------~lkY--l~~Ge~ 225 (443)
T PF04053_consen 162 VTK----DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--------HLKY--LVNGET 225 (443)
T ss_dssp E-S-----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--------EEEE--EETTEE
T ss_pred EeC----CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--------eEEE--EEcCCc
Confidence 984 56776654422 11113444432344567888765 66666654 4544 345555
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
..+.. ......-+...|....|++...+
T Consensus 226 ~~i~~--ld~~~yllgy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 226 GIIAH--LDKPLYLLGYLPKENRLYLIDRD 253 (443)
T ss_dssp EEEEE---SS--EEEEEETTTTEEEEE-TT
T ss_pred ceEEE--cCCceEEEEEEccCCEEEEEECC
Confidence 44433 12233344455544555544433
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.78 E-value=0.11 Score=55.74 Aligned_cols=212 Identities=13% Similarity=0.164 Sum_probs=102.9
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.....+.++| +|+.++. ...+ ...++.....+.+. .+....+.|++.+++.+. .. .
T Consensus 33 ~~p~~ls~np-ngr~v~V--~g~g----eY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~-~~--~------- 88 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLV--CGDG----EYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVL-ES--S------- 88 (443)
T ss_dssp S--SEEEE-T-TSSEEEE--EETT----EEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE--T--T-------
T ss_pred cCCeeEEECC-CCCEEEE--EcCC----EEEEEEccCCcccc-------cCceeEEEEecCccEEEE-EC--C-------
Confidence 3456788999 9999887 3222 25566533222211 123345889986653333 22 2
Q ss_pred ceeEE-EeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEec
Q 004971 400 NQLLL-ENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSG 476 (721)
Q Consensus 400 ~~l~~-~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~ 476 (721)
..+.+ .++.... ..+.. +..... -|. |..|...+...|.+||..+++. +++.-..+..+.||++|+.+++.+
T Consensus 89 ~~I~I~kn~~~~~~k~i~~-~~~~~~-If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t- 163 (443)
T PF04053_consen 89 STIKIYKNFKNEVVKSIKL-PFSVEK-IFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT- 163 (443)
T ss_dssp S-EEEEETTEE-TT------SS-EEE-EE---SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--
T ss_pred CeEEEEEcCccccceEEcC-Ccccce-EEc--CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-
Confidence 22334 4443322 12211 110110 122 7777777777799999998874 444433378999999999999986
Q ss_pred CCCCCCCCCcEEEEEEEcc------CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 477 GPEFASESSEVDIISINVD------DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 477 ~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
+..+.|+..+.+ ..+.......+..-...+.+..|--| -++|++. . +|.- +-+|+...+
T Consensus 164 -------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i 228 (443)
T PF04053_consen 164 -------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---N-HLKY--LVNGETGII 228 (443)
T ss_dssp -------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---T-EEEE--EETTEEEEE
T ss_pred -------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---C-eEEE--EEcCCcceE
Confidence 467888888875 11011123334432346777888766 6777764 3 6655 345663334
Q ss_pred EECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 551 HRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
..+.. ...-+...|..+.|++...+
T Consensus 229 ~~ld~---~~yllgy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 229 AHLDK---PLYLLGYLPKENRLYLIDRD 253 (443)
T ss_dssp EE-SS-----EEEEEETTTTEEEEE-TT
T ss_pred EEcCC---ceEEEEEEccCCEEEEEECC
Confidence 44432 23445666666666666655
No 310
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.21 Score=48.78 Aligned_cols=166 Identities=13% Similarity=0.212 Sum_probs=99.9
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK 535 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~ 535 (721)
..+..+.|+||.+.|+.+. +....|..++..+. -++++.... .......|.-+|++++ +.++ ..
T Consensus 86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~Gd----lirtiPL~g~~DpE~Ieyig~n~fvi-~dER--~~ 150 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGD----LIRTIPLTGFSDPETIEYIGGNQFVI-VDER--DR 150 (316)
T ss_pred ccccceeeCCCcceEEEec--------CCCceEEEEecCCc----eEEEecccccCChhHeEEecCCEEEE-Eehh--cc
Confidence 4578999999999999886 35567788888774 566665544 3445578887776554 4444 45
Q ss_pred eEEEEECCCCcc--c--c-eEECcC--C-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE-EeeecCC
Q 004971 536 NLYIMDAEGGEG--Y--G-LHRLTE--G-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-KLIQSGS 606 (721)
Q Consensus 536 ~l~~~d~~~g~~--~--~-~~~l~~--~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~ 606 (721)
.|+++.++.+.. . . ...|.. . +-....++|+|..+.|++...+ ....||.++....... .......
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-----~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-----NPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-----CCcEEEEEecCCcccccccccCcc
Confidence 666655543321 0 0 011111 1 2224679999999999999887 3458888874331111 1110000
Q ss_pred ------CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 607 ------AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 607 ------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
-..+..+.|.+.-..|++.+..+. .|..+|++|.-.
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------------~l~Evd~~G~~~ 267 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESR----------------RLLEVDLSGEVI 267 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCc----------------eEEEEecCCCee
Confidence 123456777776666766776664 377778777643
No 311
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.16 Score=50.09 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=103.7
Q ss_pred eeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEE-EEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCC--
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVG-YHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDG-- 421 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-- 421 (721)
+.+++||..+++ .+..+..+......+.|.-+ +-..+ .++.++. +.+++++...+ .........
T Consensus 50 gsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~---------Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 50 GSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT---------VRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred CeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCe---------EEEEEeecchhhhheeccCCCCC
Confidence 459999999987 44455555666667777653 43444 3333333 34444443211 111111111
Q ss_pred CCceeCc--CCCEEEEE-----eCCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971 422 SFPSFSP--KGDRIAFV-----EFPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 422 ~~~~~Sp--DG~~la~~-----~~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i 489 (721)
.+..+.- .++.++.. ....|++||+..... ..+. ...++.+.|.|...-++.+. .-++-+.|
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG------SvDGLvnl 192 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG------SVDGLVNL 192 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee------cccceEEe
Confidence 2223322 34444443 355789999865432 2332 56789999999877776665 35788889
Q ss_pred EEEEccCCCCccceEEcccCCCCCcceEEccCC-CEEEEEEeeCCceeEEEEECCCCcc
Q 004971 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-KWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
|++..+.. ...+..+..+...+....|.-++ ++|.+.+. ...+++|+++.+..
T Consensus 193 fD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH---~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 193 FDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTH---METFAIYELEDGSE 246 (376)
T ss_pred eecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEc---cCceeEEEccCCCh
Confidence 88876532 11222223344456778899887 45777776 56788888887763
No 312
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.70 E-value=0.1 Score=49.80 Aligned_cols=145 Identities=10% Similarity=0.046 Sum_probs=89.4
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCc
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSD 560 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~ 560 (721)
.+...+++.++.+.. ...+-...-...++++|+|+++++...+ ..++++|.++..... +..+... ...-
T Consensus 136 ndht~k~~~~~~~s~-----~~~~h~~~~~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey-~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSN-----KFAVHNQNLTQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEY-IENIYEAPTSDHG 206 (344)
T ss_pred CCcceeEEEEecCcc-----cceeeccccceeeeEEcCCCceEEEecC---CCcceEEEeCCccce-eeeeEecccCCCc
Confidence 345666666665442 1112121123667899999999999987 678888877654322 2222221 1112
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee----ecCCCCCcCCeEECCCCCE-EEEEEecCCCcCCC
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI----QSGSAGRANHPYFSPDGKS-IVFTSDYGGISAEP 635 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~ 635 (721)
...+||.....+|+...++ .+-+||+..-..-..+ ...+.+.+....||+-|-. |+|.+..-
T Consensus 207 F~~S~s~~~~~FAv~~Qdg-------~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf------ 273 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDG-------TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF------ 273 (344)
T ss_pred eeeeeccCcceEEEEecCC-------cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCc------
Confidence 4578998888888888775 7889998654322111 2226778888999987643 44444332
Q ss_pred CCCCCCCCCCccEEEEEcCCCCeE
Q 004971 636 ISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
+.+.++|+.+..-.
T Consensus 274 ----------s~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 274 ----------SRVHVVDTRNYVNH 287 (344)
T ss_pred ----------ceEEEEEcccCcee
Confidence 35889998776543
No 313
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.69 E-value=0.14 Score=50.19 Aligned_cols=165 Identities=14% Similarity=0.213 Sum_probs=93.7
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK 535 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~ 535 (721)
..+..++|.||.++|+.+.+ ....|+.++.++. ..+++.-.+ +....+++.-+++ ++..+++ ..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~----vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er--~~ 86 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGK----VLRRIPLDGFGDYEGITYLGNGR-YVLSEER--DQ 86 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET--------TTTEEEEEETT------EEEEEE-SS-SSEEEEEE-STTE-EEEEETT--TT
T ss_pred CCccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCC----EEEEEeCCCCCCceeEEEECCCE-EEEEEcC--CC
Confidence 45789999999999998874 3456788888764 556665544 3455678876665 4555554 45
Q ss_pred eEEEEECCC--Ccc--cceEECc-----CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec--CCCceEEeeec
Q 004971 536 NLYIMDAEG--GEG--YGLHRLT-----EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP--NGTGLRKLIQS 604 (721)
Q Consensus 536 ~l~~~d~~~--g~~--~~~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~ 604 (721)
+|+++++.. ... .....+. .+......++|+|.++.|++...+ ....||.++. ...........
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-----~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-----KPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-----SSEEEEEEESTT-SS--EEEE-H
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-----CChhhEEEccccCccceeecccc
Confidence 788777732 221 1112222 122335789999999999888765 3457888876 22222111110
Q ss_pred ------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 605 ------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 605 ------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
..-.....+++.|....|+..+..+. .|..+|.+|.-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------------~l~~~d~~G~~ 204 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------------LLLELDRQGRV 204 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTT----------------EEEEE-TT--E
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCC----------------eEEEECCCCCE
Confidence 01234567889998888888887764 38888976653
No 314
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.074 Score=53.08 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=110.4
Q ss_pred CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCC-Ccceecc----cCCCCceeCcCCCEEEEE--e
Q 004971 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPL-PDISLFR----FDGSFPSFSPKGDRIAFV--E 437 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~----~~~~~~~~SpDG~~la~~--~ 437 (721)
+|.+-+..+.||.++++|+....+.. ..+|-.+-. ... +.+.... .....++|.-.. +.+|. .
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~-------~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~ 125 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMH-------GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGER 125 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcce-------eeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCC
Confidence 34556777899999998886544333 233322210 111 2222211 122335665434 44444 3
Q ss_pred CCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971 438 FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 512 (721)
..++..-|+.+.+...+. .+.+..+..+|-...+++++ .++.+.+|++..... ...+..+...+..
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t-------~~~~V~~~D~Rd~~~--~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT-------RAKLVSFIDNRDRQN--PISLVLPANSGKN 196 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe-------cCceEEEEeccCCCC--CCceeeecCCCcc
Confidence 677888899888766655 34678889999988888886 567888888765431 1233334444455
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-----EECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-----HRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.....|.|..-.|+.+.+..+... +||......... .-|......-....|+|.|.++.......
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~--~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPN--VFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCC--ceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 666789998877777665543333 445442221000 11111111124578999999987766543
No 315
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.65 E-value=0.15 Score=56.15 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=97.9
Q ss_pred CCCceeCcCCCEEEEEeC--CcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 421 GSFPSFSPKGDRIAFVEF--PGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~--~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
...++.|+||+.+++... ..+++... ++..+.+. ......+.|+++| ++..+.+ .....|..+...+.
T Consensus 345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~-g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~ 415 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSRTTLYTVSP-GQPARALTSGSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGV 415 (573)
T ss_pred ccceeecCCCceEEEecCCCcEEEEecC-CCcceeeecCCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCC
Confidence 446799999999999853 25665554 34444444 4567899999998 6665542 22224444544332
Q ss_pred CCcc--c--eEEcccCCC-CCcceEEccCCCEEEEEEeeCCceeEEEEEC---CCCcccceEECcCC-----CcCceeeE
Q 004971 498 DGVS--A--VRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA---EGGEGYGLHRLTEG-----PWSDTMCN 564 (721)
Q Consensus 498 ~~~~--~--~~~l~~~~~-~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~---~~g~~~~~~~l~~~-----~~~~~~~~ 564 (721)
.... . .....-..+ .+..+..|+||-++++....++..+|++--+ ..|+ +..|+.. ......+.
T Consensus 416 ~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~---P~~L~~~~~~~~~~~~~sl~ 492 (573)
T PRK13614 416 AEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT---PRELTAPITLAADSDADTGA 492 (573)
T ss_pred cccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC---eEEccCceecccCCCcceeE
Confidence 0000 0 111111122 4788999999999999987766666776332 3444 3333321 23557899
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|..+++.++...... ....++++.+..+...
T Consensus 493 W~~~~sl~V~~~~~~----~~~~~~~v~v~~g~~~ 523 (573)
T PRK13614 493 WVGDSTVVVTKASAT----SNVVPELLSVDAGQPQ 523 (573)
T ss_pred EcCCCEEEEEeccCC----CcceEEEEEeCCCCcc
Confidence 998887555554332 4557888888666544
No 316
>PRK13613 lipoprotein LpqB; Provisional
Probab=96.63 E-value=0.27 Score=54.72 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=106.3
Q ss_pred CCCceeCcCCCEEEEEe--CCcEEEEECCCCce-----EE-EeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNR-----RQ-VYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~-----~~-l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...++.|+||+.+|+.. ...+++-.+.++.. +. +.......+.|.++| .+..+ ++ ...+...++.+
T Consensus 365 ~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv-d~----~~~~~~vl~v~ 438 (599)
T PRK13613 365 LRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV-DR----DPADPRLLWLL 438 (599)
T ss_pred ccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe-cC----CCCCceEEEEE
Confidence 34679999999999985 34567666543332 22 334567889999998 55554 21 01122123333
Q ss_pred EccCCCCccceEEccc--CC-CCCcceEEccCCCEEEEEEeeCCceeEEEEEC---CCCc--ccceEECcCCCcCceeeE
Q 004971 493 NVDDVDGVSAVRRLTT--NG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA---EGGE--GYGLHRLTEGPWSDTMCN 564 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~--~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~---~~g~--~~~~~~l~~~~~~~~~~~ 564 (721)
...+ ....+.. .. ..+..+..|+||.++++.....+..+|++--+ ..|. ...+..+......+..++
T Consensus 439 ~~~G-----~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~ 513 (599)
T PRK13613 439 QGDG-----EPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMS 513 (599)
T ss_pred cCCC-----cEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeE
Confidence 3222 2222222 11 26788999999999999987666667765432 2232 111233333334467899
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
|..+++.++.+.... +...+++.++++......... .-.....++-+.+-+.+++.
T Consensus 514 W~~~~sL~Vlg~~~~----~~~~v~~v~vdG~~~~~~~~~-~v~~~~~ia~~~~~~~~~v~ 569 (599)
T PRK13613 514 WAGDSQLVVLGREEG----GVQQARYVQVDGSTPPASAPA-AVTGVESITASEDERLPLVA 569 (599)
T ss_pred EcCCCEEEEEeccCC----CCcceEEEecCCcCccccccc-CCCCeeEEEecCCCCceEEE
Confidence 998887555454332 345799999987654322111 12233445555554434444
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.58 E-value=0.81 Score=44.50 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=43.2
Q ss_pred ceeCcCCCEEEEEeCCcEEEEECCCCce-----EEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNR-----RQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 424 ~~~SpDG~~la~~~~~~l~v~d~~~g~~-----~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
++.+.||+.||.+.+..|.+-.....=. .++. + ..-+.++||||+..||++. ..+.++++++-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-------S~G~i~vfdl~ 73 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-------STGTIRVFDLM 73 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-------CCCeEEEEecc
Confidence 5778999999999777777665543211 1222 1 2235789999999999985 46777777554
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.088 Score=55.06 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=126.3
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEe
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKC 389 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~ 389 (721)
....++++..-+..+.|+. ||.+|+. |+++.++.+||.-..+..... ..+|...+....|-|. +.+|+. +.
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~S-----GSDD~r~ivWd~~~~KllhsI-~TgHtaNIFsvKFvP~tnnriv~-sg 113 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLAS-----GSDDTRLIVWDPFEYKLLHSI-STGHTANIFSVKFVPYTNNRIVL-SG 113 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEee-----cCCcceEEeecchhcceeeee-ecccccceeEEeeeccCCCeEEE-ec
Confidence 4455677777788899999 9999887 668888999999765533322 2556777888888886 445555 33
Q ss_pred eCCCCCCCCcceeEEEeccCC---------CCcceecc---cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce----
Q 004971 390 RGGSTREDGNNQLLLENIKSP---------LPDISLFR---FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR---- 451 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~---~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~---- 451 (721)
.++ ..+.+.++... ........ ..+..++..|++-..+.. .++.|..+|+.....
T Consensus 114 AgD-------k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 114 AGD-------KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred cCc-------ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 343 34666666531 11111111 112335666777444333 477888888754211
Q ss_pred ----EEEe---e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971 452 ----RQVY---F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522 (721)
Q Consensus 452 ----~~l~---~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg 522 (721)
..+. . -....+..||.....+.+. ..+.-.++|+... ..+.+.........+ --+++
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVG------gsdpfarLYD~Rr-------~lks~~s~~~~~~~p-p~~~~ 252 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVG------GSDPFARLYDRRR-------VLKSFRSDGTMNTCP-PKDCR 252 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEec------CCCchhhhhhhhh-------hccCCCCCccccCCC-Ccccc
Confidence 1111 1 1234677888766555443 2345566666321 111111111111111 00111
Q ss_pred CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
- +.+-+ ..+| -+. .|. +..-....+.++|+|+|..|++.-..+ +||++|+..++.
T Consensus 253 c-v~yf~----p~hl--kn~-~gn------~~~~~~~~t~vtfnpNGtElLvs~~gE-------hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 253 C-VRYFS----PGHL--KNS-QGN------LDRYITCCTYVTFNPNGTELLVSWGGE-------HVYLFDVNEDKS 307 (758)
T ss_pred h-hheec----Cccc--cCc-ccc------cccceeeeEEEEECCCCcEEEEeeCCe-------EEEEEeecCCCC
Confidence 1 11111 1112 011 111 111111236789999999998887664 899999977653
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.54 Score=51.67 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=63.4
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEee--ecCCCCC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLI--QSGSAGR 609 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~--~~~~~~~ 609 (721)
.+.|-++|+.++.. -+.+.-+...+..+.|--..+.+-|+....+. ..-.+++.+-|+.+|..+..- +......
T Consensus 446 sGTV~vvdvst~~v--~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp 523 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAV--AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP 523 (1062)
T ss_pred CceEEEEEecchhh--hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence 56788888888764 33444556667788888777766666554321 123468899999998655443 2223456
Q ss_pred cCCeEECCCCCEEEEEEecC
Q 004971 610 ANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 610 ~~~~~~SpDG~~l~~~~~~~ 629 (721)
+..+..|.-|+||+..-.+.
T Consensus 524 I~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred ceeeeecccCceEEEEeccc
Confidence 77788999999998887765
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=1.9 Score=47.67 Aligned_cols=71 Identities=6% Similarity=-0.025 Sum_probs=46.6
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCC
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~ 666 (721)
.|-++|+.++...+-+.. |...+..+.|.-..+.+-|..+..... . --..++|.+.|+.+|..+.+-.-..
T Consensus 448 TV~vvdvst~~v~~~fsv-ht~~VkgleW~g~sslvSfsys~~n~~-s-------g~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 448 TVDVVDVSTNAVAASFSV-HTSLVKGLEWLGNSSLVSFSYSHVNSA-S-------GGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEEEEecchhhhhhhcc-cccceeeeeeccceeEEEeeecccccc-c-------cceeeeEEEEEcccccccccccCCC
Confidence 788889888766554443 677888899987777666654433220 0 0112469999999998777764333
No 321
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.45 E-value=0.019 Score=62.84 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=128.7
Q ss_pred CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC
Q 004971 289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP 368 (721)
Q Consensus 289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~ 368 (721)
+..+.||.+.... ...-+.++...+...+++. +.-.++.++ .+.-|++|-+.++. .+..+.+|
T Consensus 211 d~lvKiwS~et~~---------~lAs~rGhs~ditdlavs~-~n~~iaaaS-----~D~vIrvWrl~~~~--pvsvLrgh 273 (1113)
T KOG0644|consen 211 DRLVKIWSMETAR---------CLASCRGHSGDITDLAVSS-NNTMIAAAS-----NDKVIRVWRLPDGA--PVSVLRGH 273 (1113)
T ss_pred cceeeeeeccchh---------hhccCCCCccccchhccch-hhhhhhhcc-----cCceEEEEecCCCc--hHHHHhcc
Confidence 5677888543322 3444456666778888877 666666543 45569999999998 44445677
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE----eCCcEEEE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV----EFPGVYVV 444 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~----~~~~l~v~ 444 (721)
.+.+..++|||-- ..+.++. ..+|-+++..- + ...+-+. ++++.++.. ....-+.-
T Consensus 274 tgavtaiafsP~~----sss~dgt-------~~~wd~r~~~~---~----y~prp~~--~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 274 TGAVTAIAFSPRA----SSSDDGT-------CRIWDARLEPR---I----YVPRPLK--FTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ccceeeeccCccc----cCCCCCc-------eEecccccccc---c----cCCCCCC--cccccceeeeecccccccccc
Confidence 8888889998854 1122222 23333221100 0 0011111 122222111 00000000
Q ss_pred ECCCCceEE-----Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971 445 NSDGSNRRQ-----VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517 (721)
Q Consensus 445 d~~~g~~~~-----l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (721)
.-.+++... +. .........+.|-..+.++. .....+..+++-.+ .....+..+....+.+.
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~a--------r~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTA--------RNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceee--------eeeeEeeeeecccc---hhhhhhcccccceeeee
Confidence 001111000 00 00111111222222222221 22333333333322 23455556666677788
Q ss_pred EccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
++|=+.+++..... +....+||+-.|.+ ++....+.+....-.||+||+.+++....+ ++|+....-++
T Consensus 403 ~Hpfn~ri~msag~--dgst~iwdi~eg~p--ik~y~~gh~kl~d~kFSqdgts~~lsd~hg-------ql~i~g~gqs~ 471 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGY--DGSTIIWDIWEGIP--IKHYFIGHGKLVDGKFSQDGTSIALSDDHG-------QLYILGTGQSK 471 (1113)
T ss_pred ecCCCcHhhhhccC--CCceEeeecccCCc--ceeeecccceeeccccCCCCceEecCCCCC-------ceEEeccCCCc
Confidence 89988888877655 55788999988875 333333445556779999999998877664 78887654443
No 322
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.42 E-value=0.074 Score=53.61 Aligned_cols=153 Identities=11% Similarity=0.031 Sum_probs=88.4
Q ss_pred CceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
....+++|+.||... ....++++..... .+.+. ......+.+-.+...+.++-.. .+...+.++..+.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dka----gD~~~~di~s~~~- 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKA----GDVYSFDILSADS- 141 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeec----CCceeeeeecccc-
Confidence 345677787777773 5555566554433 22222 3344556666666665554310 1222333333332
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~ 574 (721)
. ..+.+..+-.....++||||+++|++... +.+|++.....-.. +..+. .+...+..++.-++ ..|+.
T Consensus 142 -~----~~~~~lGhvSml~dVavS~D~~~IitaDR---DEkIRvs~ypa~f~--IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 142 -G----RCEPILGHVSMLLDVAVSPDDQFIITADR---DEKIRVSRYPATFV--IESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred -c----CcchhhhhhhhhheeeecCCCCEEEEecC---CceEEEEecCcccc--hhhhccccHhheeeeeeccC-ceeee
Confidence 1 44455555567888999999998887765 56777765543221 22222 35556677777754 44565
Q ss_pred EEccCCCCCCceeEEEEecCCCce
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
++.+. +|++||..+|+.
T Consensus 211 ~sGD~-------tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 211 GSGDK-------TLRLWDITSGKL 227 (390)
T ss_pred cCCCC-------cEEEEecccCCc
Confidence 55553 999999988864
No 323
>PRK13615 lipoprotein LpqB; Provisional
Probab=96.41 E-value=0.33 Score=53.26 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=97.3
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
..++.|+||+.+++.. ...+++.... +..+.+. ......+.|+++| ++..+.+ .....+......+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~-------g~~~~l~~~~~~G--- 404 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVWSTPA-------SDPRGLVAWGPDG--- 404 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCC-CEEEEeC-------CCceEEEEecCCC---
Confidence 4679999999999985 4456555444 3444444 3357899999998 6666542 2234444443332
Q ss_pred ccceEEccc---CCCCCcceEEccCCCEEEEEEeeCCceeEEEEE--CCCCcccce----EECcCCCcCceeeEEccCCC
Q 004971 500 VSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD--AEGGEGYGL----HRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 500 ~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d--~~~g~~~~~----~~l~~~~~~~~~~~~SpDG~ 570 (721)
....+.. .+..+..+..|+||-++++..+..+..+|++-- -.++.+..+ ..+.........+.|..+++
T Consensus 405 --~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~ 482 (557)
T PRK13615 405 --VGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELD 482 (557)
T ss_pred --ceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCE
Confidence 2222211 124678899999999999998766666777632 233421112 23332333567899999888
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
.++...... ....+++..+.+...
T Consensus 483 laVl~~~~~----~~~~v~~v~v~g~~~ 506 (557)
T PRK13615 483 VATLTLAPD----GERQVELHQVGGPSK 506 (557)
T ss_pred EEEEeccCC----CCceEEEEECCCccc
Confidence 555553332 445789999886543
No 324
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.28 E-value=0.06 Score=60.62 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=76.6
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.++++.-++++.+- ..+|++|++...+. ...+..+.+.+..+.||-||++|+..+.+. .+.+|+++++
T Consensus 140 g~s~~~~~i~~gsv---~~~iivW~~~~dn~--p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-------siRlW~i~s~ 207 (967)
T KOG0974|consen 140 GDSAEELYIASGSV---FGEIIVWKPHEDNK--PIRLKGHEGSIFSIVTSLDGRYIASVSDDR-------SIRLWPIDSR 207 (967)
T ss_pred eccCcEEEEEeccc---cccEEEEeccccCC--cceecccCCceEEEEEccCCcEEEEEecCc-------ceeeeecccc
Confidence 45666667776665 67899998874332 446778888889999999999999999885 8999999998
Q ss_pred ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+....+--+|...+....|.|. +|+..+.+-.
T Consensus 208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred cccCcccccccceeEEEEeccc--eeEEeccceE
Confidence 7655333347788888999988 7777776654
No 325
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=2.6 Score=48.85 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=72.3
Q ss_pred eEEccCCC-EEEEEEeeCC-ceeEEEEECCCCcccceEECcCCCcCce-eeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 516 PSVSPDGK-WIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDT-MCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 516 ~~~SpDg~-~l~~~s~~~g-~~~l~~~d~~~g~~~~~~~l~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
+.++.|+. .+++.....+ ..++..+....+.. +..++.+.+.+. -+.++.|.+.++|...... .+.+++|..+
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~--~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~--~~~~~ly~i~ 420 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSE--PRMLTSGNWEVTSILGYDKDSNRIYFDAYEED--PSERHLYSIS 420 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCc--cccccccceEEEEeccccCCCceEEEEecCCC--CCceEEEEEE
Confidence 56788874 4444444444 56777777666632 667777766543 3566788999999887642 3678999999
Q ss_pred cCCCceEEeeecCC--CCCcCCeEECCCCCEEEEEEecCC
Q 004971 593 PNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 593 ~~~~~~~~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+.+....+++.... .....++.+++..++++.......
T Consensus 421 ~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~ 460 (755)
T KOG2100|consen 421 LGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPK 460 (755)
T ss_pred ccccccccccccCCCCcceEEEEecCCcccEEEEEccCCC
Confidence 98877666653211 123346778888888777665544
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.21 E-value=0.96 Score=44.26 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=73.9
Q ss_pred CCcEEEEECCCCceEEEe--ecCceeeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971 438 FPGVYVVNSDGSNRRQVY--FKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 513 (721)
++.|..+|+.+|+...-. ......+. ..+++.++++.. ....|+.++...+ ...-+... ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~l~~~d~~tG---~~~W~~~~-~~~~ 68 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---------GDGNLYALDAKTG---KVLWRFDL-PGPI 68 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---------TTSEEEEEETTTS---EEEEEEEC-SSCG
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---------CCCEEEEEECCCC---CEEEEeec-cccc
Confidence 345777777666643322 11123333 444677777764 3345666665432 12222222 2122
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~ 589 (721)
.... ..++..+++... +..|+.+|..+|+. +-..... ......+....+++.+++..... .|+
T Consensus 69 ~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~ 135 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTS---DGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLV 135 (238)
T ss_dssp GSGE-EEETTEEEEEET---TSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------EEE
T ss_pred ccee-eecccccccccc---eeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccC-------cEE
Confidence 2222 345566776664 45899999999985 3332111 11122344445588888888654 899
Q ss_pred EEecCCCceEE
Q 004971 590 LIHPNGTGLRK 600 (721)
Q Consensus 590 ~~d~~~~~~~~ 600 (721)
.+|+.+|+..-
T Consensus 136 ~~d~~tG~~~w 146 (238)
T PF13360_consen 136 ALDPKTGKLLW 146 (238)
T ss_dssp EEETTTTEEEE
T ss_pred EEecCCCcEEE
Confidence 99999997643
No 327
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.21 E-value=0.28 Score=51.76 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE-ECCCC-----cccce-EECcCC----CcCceeeEEccCCCEE
Q 004971 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM-DAEGG-----EGYGL-HRLTEG----PWSDTMCNWSPDGEWI 572 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~-d~~~g-----~~~~~-~~l~~~----~~~~~~~~~SpDG~~l 572 (721)
+.+.........+++.++| |+++. ...|+++ |.++. +.+.+ ..+... ......+.|.|||+ |
T Consensus 65 ~vfa~~l~~p~Gi~~~~~G--lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-L 137 (367)
T TIGR02604 65 NVFAEELSMVTGLAVAVGG--VYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-L 137 (367)
T ss_pred EEeecCCCCccceeEecCC--EEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-E
Confidence 3443333456778999998 55544 3568877 44321 21111 112221 22346799999996 6
Q ss_pred EEEEccCCC-------------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 573 AFASDRDNP-------------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 573 ~~~~~~~~~-------------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
+++...... ......|++++.++++.+.+.. .-.....++|+|+|+.++
T Consensus 138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~--G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH--GFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec--CcCCCccceECCCCCEEE
Confidence 665442100 0012469999999887665532 233456899999998643
No 328
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.17 E-value=1.2 Score=42.05 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=78.2
Q ss_pred CceeCcCCCEEEEE----------eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971 423 FPSFSPKGDRIAFV----------EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 423 ~~~~SpDG~~la~~----------~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~ 490 (721)
....+|+|++.+-. -.+.||.|-+ +++...+. -+....++|+.|.+.++|.- ..+-.+.-|
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD------sln~~V~a~ 185 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYID------SLNYEVDAY 185 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEc------cCceEEeee
Confidence 35789999884332 1345666654 44444444 34556799999999999874 234455558
Q ss_pred EEEccCCCCcc--ceEEcccCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971 491 SINVDDVDGVS--AVRRLTTNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564 (721)
Q Consensus 491 ~~~~~~~~~~~--~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~ 564 (721)
+++..++.... .+..|.... ......++.-+|+..+..-+ ...++.+|+.+|+. +..+.-....++..+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~--L~eiklPt~qitscc 260 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKI--LLEIKLPTPQITSCC 260 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcE--EEEEEcCCCceEEEE
Confidence 87776642111 111222211 12223444445554333333 56899999999986 443333333456677
Q ss_pred Ec-cCCCEEEEEEc
Q 004971 565 WS-PDGEWIAFASD 577 (721)
Q Consensus 565 ~S-pDG~~l~~~~~ 577 (721)
|- |+=..++++..
T Consensus 261 FgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 261 FGGKNLDILYVTTA 274 (310)
T ss_pred ecCCCccEEEEEeh
Confidence 74 32234454444
No 329
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=96.14 E-value=2 Score=46.55 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=38.2
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEE
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY 386 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~ 386 (721)
....+| +++++++.-+..|++...++.+|++++.. +.. +......+.|-.++..++.
T Consensus 114 Gas~~~-~~~R~l~s~S~gG~D~~~~re~Dlet~~f--v~~---~~f~~~~~~wld~d~~~~~ 170 (648)
T COG1505 114 GASVLP-DGTRLLYSLSIGGSDAGITREFDLETGEF--VEE---EGFKFPGISWLDDDGVFVS 170 (648)
T ss_pred cceeCC-CCCEEEEEecCCCCcceEEEEEEeccccc--ccC---CCccccceEEecCCCEEEe
Confidence 334458 99999998888888888899999999863 221 0111222778777755544
No 330
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.07 E-value=1.8 Score=43.18 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECC--CCceEEEe--------------ec---CceeeEEcCCCCeEEEEecCCCCC
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSD--GSNRRQVY--------------FK---NAFSTVWDPVREAVVYTSGGPEFA 481 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~--~g~~~~l~--------------~~---~~~~~~~spdg~~la~~~~~~~~~ 481 (721)
...+.||++|++|+.-.--.|.+||+. .+...... .. .-+...||-++..++..+
T Consensus 275 ISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs------ 348 (433)
T KOG1354|consen 275 ISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS------ 348 (433)
T ss_pred hhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc------
Confidence 345799999999888777889999984 33222222 11 234688999998888765
Q ss_pred CCCCcEEEEEEEc
Q 004971 482 SESSEVDIISINV 494 (721)
Q Consensus 482 ~~~~~~~i~~~~~ 494 (721)
-....+++..+.
T Consensus 349 -y~n~frvf~~~~ 360 (433)
T KOG1354|consen 349 -YNNVFRVFNLAR 360 (433)
T ss_pred -ccceEEEecCCC
Confidence 234555665443
No 331
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.95 E-value=1.5 Score=41.36 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=84.3
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
...+...+|+|++.+=+..........-...+|..-.+. ++..+-..-.....++|+-|.|.++|.... +..+
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V 182 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSL--NYEV 182 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccC--ceEE
Confidence 345667899999944333211111122223344443332 444444443456678999999999998654 4456
Q ss_pred --EEEECCCCcccc---eEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC
Q 004971 538 --YIMDAEGGEGYG---LHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608 (721)
Q Consensus 538 --~~~d~~~g~~~~---~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 608 (721)
|-+|..+|.... +-.+... ......++...+|...+.+-+. ..|+++|+.+|+..+-... ...
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-------~~V~~~dp~tGK~L~eikl-Pt~ 254 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-------GTVQKVDPTTGKILLEIKL-PTP 254 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-------cEEEEECCCCCcEEEEEEc-CCC
Confidence 666688876422 2222221 1112234555566533333333 3899999999986544433 344
Q ss_pred CcCCeEEC-CCCCEEEEEEecC
Q 004971 609 RANHPYFS-PDGKSIVFTSDYG 629 (721)
Q Consensus 609 ~~~~~~~S-pDG~~l~~~~~~~ 629 (721)
.+.+.+|- |+=..++++....
T Consensus 255 qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred ceEEEEecCCCccEEEEEehhc
Confidence 56777774 2223455555443
No 332
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.81 E-value=2.9 Score=46.74 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=94.1
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----c-ceecccCCCCceeCcCCCEEEEEeC----Cc-
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----D-ISLFRFDGSFPSFSPKGDRIAFVEF----PG- 440 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~-~~~~~~~~~~~~~SpDG~~la~~~~----~~- 440 (721)
....++.|+++..+++...++ ..+++-.+..+.. . .......-..|.|.++| ++-.+.. ..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~v 434 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRL 434 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceE
Confidence 456789999999999875322 3466654432211 0 01111223457888888 5544421 22
Q ss_pred EEEEECCCCceEEEe----ec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCCCC
Q 004971 441 VYVVNSDGSNRRQVY----FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGKNN 513 (721)
Q Consensus 441 l~v~d~~~g~~~~l~----~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~~~ 513 (721)
+.+..- +|+...+. .+ .+..+..|+||.++++.... ...+++.|-.+..+.... -.....+.......
T Consensus 435 l~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~----~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v 509 (599)
T PRK13613 435 LWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEK----DGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDV 509 (599)
T ss_pred EEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEec----CCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcc
Confidence 444443 55544444 23 68899999999999998742 123556666665544311 01112222222346
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
..++|..++..++......+...++++++++..
T Consensus 510 ~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 510 TDMSWAGDSQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred ceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence 778999988855545444446789999998655
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.65 E-value=2 Score=45.99 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 440 GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 440 ~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
.|.+++..|.....+. .+.+..+.|+.+.+.+++. .++.+.+|++
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~--------~dG~v~vy~~ 108 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQ--------SDGTVRVYDL 108 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEE--------cCCEEEEEeC
Confidence 4888888887766665 5678899999876666554 4677888765
No 334
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=3.2 Score=48.03 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=51.6
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
+.++.|+....+...... .+..++..+....+ .++.++.. .-.....+.++.+.+.++|.+......
T Consensus 345 ~~~~~d~~~~~~~~~~~~--~~~~hi~~~~~~~~~~~~~lt~g-~w~v~~i~~~~~~~~~i~f~~~~~~~~--------- 412 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSD--GGYNHIAYLKLSNGSEPRMLTSG-NWEVTSILGYDKDSNRIYFDAYEEDPS--------- 412 (755)
T ss_pred ceEeecCCceeEEEeecc--CCEEEEEEEEcCCCCcccccccc-ceEEEEeccccCCCceEEEEecCCCCC---------
Confidence 567778744433333221 11456666655555 44444431 111123345667889999888765221
Q ss_pred CCCCccEEEEEcCCCCeEEeccCCC
Q 004971 642 YQPYGEIFKIKLDGSDLKRLTQNSF 666 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~~~lt~~~~ 666 (721)
.++||.+++.+....++|....
T Consensus 413 ---~~~ly~i~~~~~~~~~lt~~~~ 434 (755)
T KOG2100|consen 413 ---ERHLYSISLGSGTVESLTCSLI 434 (755)
T ss_pred ---ceEEEEEEccccccccccccCC
Confidence 3479999999888777887554
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.59 Score=50.91 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=59.8
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC--CCccccccCCCCCEEEEEecCCCCCCcccceeeeeEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG--VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIY 252 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~ 252 (721)
.++++++.+..+ .||..+-.++..+.++... .......+|++..++|+....+- -.|+
T Consensus 44 t~~~l~~GsS~G----------~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~----------V~v~ 103 (726)
T KOG3621|consen 44 TEEYLAMGSSAG----------SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR----------VSVF 103 (726)
T ss_pred CCceEEEecccc----------eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce----------EEee
Confidence 388888877664 8999988888888775532 22344467888888887654332 3444
Q ss_pred EEEcCCCceeEEEeccC-----C---cceeccCCeEEEEeccCCCCcEEEEEE
Q 004971 253 IFLTRDGTQRVKIVENG-----G---WPCWVDESTLFFHRKSEEDDWISVYKV 297 (721)
Q Consensus 253 ~~d~~~g~~~~l~~~~~-----~---~~~ws~dg~l~~~~~~~~~g~~~l~~~ 297 (721)
.++. .+...+....+. . ...|++|+.-+| ..+..|.+.+-.+
T Consensus 104 ql~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y--sGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 104 QLNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY--SGDSQGKVVLTEL 153 (726)
T ss_pred hhhc-cCCCcceeeccccccCCceEEEEEecccccEEe--ecCCCceEEEEEe
Confidence 4443 333333332221 1 348999987555 3554666644433
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.45 E-value=0.052 Score=56.67 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=78.4
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccC-CCEEEEEEccC
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPD-GEWIAFASDRD 579 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpD-G~~l~~~~~~~ 579 (721)
....|+.+.+-+..+.|+.||.+|+..++ +.+|.+||.-..+. +..+. .+...+....|-|- +..|+.+...
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAg- 115 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAG- 115 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccC-
Confidence 34567788889999999999999999887 88999999985553 44443 45566777888774 4455544432
Q ss_pred CCCCCceeEEEEecCCCce----------EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 580 NPGSGSFEMYLIHPNGTGL----------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
...|+++|++..+. ..+... +...+..++--|++-..++....++
T Consensus 116 -----Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 116 -----DKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred -----cceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCc
Confidence 24899999875221 112222 3445667788888866666655544
No 337
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.45 E-value=2.6 Score=46.61 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=91.9
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC---CcEEEEECC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF---PGVYVVNSD 447 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~---~~l~v~d~~ 447 (721)
.+..++.|+||+.+++...+. ..+++...... .........-..+.|.++| ++-.+.+ ..|..+.-.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~--------~~l~~~~~g~~-~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~ 413 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR--------TTLYTVSPGQP-ARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPT 413 (573)
T ss_pred cccceeecCCCceEEEecCCC--------cEEEEecCCCc-ceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecC
Confidence 456789999999999864322 24554443222 1111112223458899888 5555432 245555433
Q ss_pred C-CceE-----EEe----ec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-----CC
Q 004971 448 G-SNRR-----QVY----FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-----GK 511 (721)
Q Consensus 448 ~-g~~~-----~l~----~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-----~~ 511 (721)
+ ++.. .+. .+ .+..+..|+||.++++.... .....+.|-.+..+.. +..+.|+.. ..
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R~~~---G~P~~L~~~~~~~~~~ 486 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQ----NGKSRVQVAGIVRNED---GTPRELTAPITLAADS 486 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEe----CCccEEEEEEEEeCCC---CCeEEccCceecccCC
Confidence 2 1111 121 23 48899999999999998731 1123366666655433 233444432 13
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
....+.|..++..++.....+++..++++.+..|.
T Consensus 487 ~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 487 DADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred CcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCC
Confidence 56678999998866665544556678888886665
No 338
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=3.1 Score=40.96 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
....+.|+||.+.|..+. ...|.-++.+|.-.+.+. -.....+.|.-+|++++.-. .+..+.++.++.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE-------R~~~l~~~~vd~ 159 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE-------RDRALYLFTVDA 159 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh-------hcceEEEEEEcC
Confidence 356789999999988874 455666777776666666 33455678888887766542 456667777766
Q ss_pred cCCCCccc--eEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--------CcCce
Q 004971 495 DDVDGVSA--VRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--------PWSDT 561 (721)
Q Consensus 495 ~~~~~~~~--~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--------~~~~~ 561 (721)
++...... ...|.... ..-..++|+|..+.|++..++. ...||.++...... ...+... -.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l--~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSL--SVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCccc--ccccccCcccccceEeeccc
Confidence 64310001 11122211 2334589999999999998753 34677776332111 1111111 11345
Q ss_pred eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--C-----CCCcCCeEECCCCCEEEEEEec
Q 004971 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--S-----AGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~-----~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
.+.|.+....|++.+... ..|...|.++.-...+.... + -.....++..++|. ||..+..
T Consensus 237 gl~~~~~~~~LLVLS~ES------r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEP 303 (316)
T COG3204 237 GLEFNAITNSLLVLSDES------RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEP 303 (316)
T ss_pred cceecCCCCcEEEEecCC------ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecC
Confidence 677887666666665543 36777887665332222110 1 11234567776665 4444443
No 339
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.38 E-value=2.9 Score=40.59 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC-CCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG-VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
+| ||. +.|.....+ .|=.+|+.+|+..++.-.. ..-.....-|||..-+.-. ..
T Consensus 70 ap--dG~-VWft~qg~g---------aiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~-------------~~ 124 (353)
T COG4257 70 AP--DGA-VWFTAQGTG---------AIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT-------------GL 124 (353)
T ss_pred CC--CCc-eEEecCccc---------cceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC-------------cc
Confidence 56 776 666544432 5667889999988763222 1222225678886544411 13
Q ss_pred eEEEEEcCCCceeEEEecc--C----CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--CCCc
Q 004971 250 DIYIFLTRDGTQRVKIVEN--G----GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--PGLH 321 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~~~~--~----~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 321 (721)
.|.+++.++++.++..... . +.+.|.++|.+.|+....--|. ++ +.. ....+.. .+..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGr-----Ld-Pa~--------~~i~vfpaPqG~g 190 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGR-----LD-PAR--------NVISVFPAPQGGG 190 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccccee-----cC-ccc--------CceeeeccCCCCC
Confidence 7888999899887765221 1 2568999999999543221111 11 111 1111111 2445
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~ 363 (721)
...++..| ||+ ++|.+... ..|..+|..++-...+.
T Consensus 191 pyGi~atp-dGs-vwyaslag----naiaridp~~~~aev~p 226 (353)
T COG4257 191 PYGICATP-DGS-VWYASLAG----NAIARIDPFAGHAEVVP 226 (353)
T ss_pred CcceEECC-CCc-EEEEeccc----cceEEcccccCCcceec
Confidence 56889999 997 66654332 23788888887544444
No 340
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=3.3 Score=47.57 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=106.2
Q ss_pred ceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe---ecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 424 PSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY---FKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 424 ~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~---~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
..|-....+|+..+ -..|.+||.+.... ..+. ...++.+.-+ +.|..++... .++.+++|+......
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf-------aDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF-------ADGSVRVYDRRMAPP 1243 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-------cCCceEEeecccCCc
Confidence 35554444555554 45688999876542 2333 1223333222 2356666654 689999999876543
Q ss_pred CCccceEEcccCCC--CCcceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccc-eEECcCC--CcCceeeEEccCCCE
Q 004971 498 DGVSAVRRLTTNGK--NNAFPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEG--PWSDTMCNWSPDGEW 571 (721)
Q Consensus 498 ~~~~~~~~l~~~~~--~~~~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~-~~~l~~~--~~~~~~~~~SpDG~~ 571 (721)
+. .+.....+.. .+.++.+-+.|-. |+.++. ++.|++||+....... +...... ....+.+...++...
T Consensus 1244 ds--~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1244 DS--LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred cc--cceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence 10 1222223332 2666777776554 776666 7889999998632211 1112211 123678888999988
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEEeeecC-----CCCCcCCeEECCCCCEEEEEEecC
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
||.++.. .|.+|++.+.+...+...+ .-+.+..++|.|---.|+..+.+.
T Consensus 1319 iAsGs~q--------~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1319 IASGSAQ--------LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred eeecCcc--------eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 8877763 7999999876543332111 123446678888755556554444
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.36 E-value=0.77 Score=49.18 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
....+++|+.++++.. .++.|.+||...+...... .-.+..++|.|+|..+++++ +.+.+.+|++.++.
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s-------~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS-------EQGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc-------CCceEEEEEeecCc
Confidence 3446899999999888 6999999999777544443 44677899999999999986 57899999998865
No 342
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.35 E-value=4.1 Score=47.62 Aligned_cols=103 Identities=10% Similarity=0.066 Sum_probs=65.2
Q ss_pred EEEEE-eCCcEEEEECCCCce-E----EEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 432 RIAFV-EFPGVYVVNSDGSNR-R----QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 432 ~la~~-~~~~l~v~d~~~g~~-~----~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
.|+|. ..+.|..||+..... . .+..|.+++++.+|-+.+++..+ ..+...+|++.... ....
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-------s~G~l~lWDLRF~~-----~i~s 1232 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-------SRGQLVLWDLRFRV-----PILS 1232 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-------CCceEEEEEeecCc-----eeec
Confidence 45555 477888998765432 1 12267889999999999999886 56889999998754 2222
Q ss_pred cccCC-CCCcceE---EccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 506 LTTNG-KNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 506 l~~~~-~~~~~~~---~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
+.... .....+. +.|....+++++. .+.+.|-+|+..+|..
T Consensus 1233 w~~P~~~~i~~v~~~~~~~~~S~~vs~~~-~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1233 WEHPARAPIRHVWLCPTYPQESVSVSAGS-SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred ccCcccCCcceEEeeccCCCCceEEEecc-cCCCceeeeecccCcc
Confidence 22211 2233333 3344455555543 2467888999888864
No 343
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.31 E-value=1.3 Score=46.75 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCcceEEccCCCEEEEEEee---------CCceeEEEEECCC--CcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 511 KNNAFPSVSPDGKWIVFRSTR---------TGYKNLYIMDAEG--GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~---------~g~~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.....++|.++|+.++..... ....+|++++-.+ |.....+.+..+......+++.++| |+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 355678999999955543211 1123788876542 3322233444433344678999998 5555433
Q ss_pred CCCCCceeEEEE-ecCCC-----ceEEeeecC-C-----CCCcCCeEECCCCCEEEEEEecCCCc-CCCCCC--CCCCCC
Q 004971 580 NPGSGSFEMYLI-HPNGT-----GLRKLIQSG-S-----AGRANHPYFSPDGKSIVFTSDYGGIS-AEPIST--PHQYQP 644 (721)
Q Consensus 580 ~~~~~~~~i~~~-d~~~~-----~~~~l~~~~-~-----~~~~~~~~~SpDG~~l~~~~~~~~~~-~~~~~~--~~~~~~ 644 (721)
.|+++ |.++. +.+.+.... . ......+.|.|||+ ||++....+.. ...... ......
T Consensus 91 -------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 91 -------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred -------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccccc
Confidence 68776 44321 333343211 1 12356799999997 55544322110 000000 001122
Q ss_pred CccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 645 ~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
.+.|++++.++++...+...-......+|+|.
T Consensus 163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~ 194 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSW 194 (367)
T ss_pred CceEEEEecCCCeEEEEecCcCCCccceECCC
Confidence 35799999999888777654444567889885
No 344
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.27 E-value=2.6 Score=43.56 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=71.8
Q ss_pred ceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcC-------------CCcCceeeEEccCCCEEEEEEc
Q 004971 515 FPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTE-------------GPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~-------------~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.+++.++|..+ ++.+.. ....|+.++.+ |+......+.. .......++++|||+.|+....
T Consensus 89 gi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEE-EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 56776777644 444431 12789999988 54311111111 1223568999999997776654
Q ss_pred cCCCCC---------CceeEEEEecCCCc--eEEe-eecC------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971 578 RDNPGS---------GSFEMYLIHPNGTG--LRKL-IQSG------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639 (721)
Q Consensus 578 ~~~~~~---------~~~~i~~~d~~~~~--~~~l-~~~~------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~ 639 (721)
..-... ....|+.+|..+.. ..+. .... ....+..+.+-+|++.|+.-......
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~-------- 238 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG-------- 238 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--------
Confidence 321101 12568888887622 1221 1111 23456778899999977765542210
Q ss_pred CCCCCCccEEEEEcCCC
Q 004971 640 HQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 640 ~~~~~~~~l~~~d~~~~ 656 (721)
......||.+++..-
T Consensus 239 --~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 239 --TGNYKRIYRVDLSDA 253 (326)
T ss_pred --ccceEEEEEEEcccc
Confidence 111346898887643
No 345
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.15 E-value=0.11 Score=41.45 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred eEEccCCCEEEEEEee---------------CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 516 PSVSPDGKWIVFRSTR---------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~---------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
+.+.+++..|+|+... ....+|+.+|+.+++ .+.+..+-...+.+++|||++.|+++....
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et~~- 78 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAETGR- 78 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEGGG-
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEeccC-
Confidence 5667775667776542 236789999999998 666666555568899999999999888643
Q ss_pred CCCCceeEEEEecCC
Q 004971 581 PGSGSFEMYLIHPNG 595 (721)
Q Consensus 581 ~~~~~~~i~~~d~~~ 595 (721)
.+|.+|-+++
T Consensus 79 -----~Ri~rywl~G 88 (89)
T PF03088_consen 79 -----YRILRYWLKG 88 (89)
T ss_dssp -----TEEEEEESSS
T ss_pred -----ceEEEEEEeC
Confidence 4788777654
No 346
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.13 E-value=1.1 Score=43.72 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=97.5
Q ss_pred ceeCcCCCEEEEE---eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 424 PSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 424 ~~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
+.+..||..+-.+ +.+.|..+|+++|+...-. +...+.--..--+.+|+..+ ...+...+|+.+. -
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~t--l- 120 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNT--L- 120 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTT--T-
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE------ecCCeEEEEcccc--c-
Confidence 4555556433333 3568999999999854332 22233222222355666655 2345555555432 1
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEE
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~ 575 (721)
....++.-. +.-..++ .||+.|+.+.. ..+|+.+|+++-+......++.... ..+.+-|- +|. |+.-
T Consensus 121 --~~~~~~~y~-~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyAN 190 (264)
T PF05096_consen 121 --KKIGTFPYP-GEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYAN 190 (264)
T ss_dssp --EEEEEEE-S-SS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEE
T ss_pred --eEEEEEecC-CcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEE
Confidence 123333222 2223333 78898887765 7899999998765422223333322 24556665 553 5544
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeecC--------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--------------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--------------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
-... ..|.+.|..+|++....... .....+.++|.|+...|+++...-
T Consensus 191 VW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W 252 (264)
T PF05096_consen 191 VWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW 252 (264)
T ss_dssp ETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred eCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence 4432 38999999999987765210 023347799999999998887654
No 347
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=94.92 E-value=0.56 Score=47.83 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=58.8
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce--EEeeecCCCCCcC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL--RKLIQSGSAGRAN 611 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~ 611 (721)
..+|+.||..+.+ .+.|..+-...+.++.|||+..++++.... ..|.+|-+.+.+. ..+...+..+...
T Consensus 198 ~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~~------~ri~rywi~g~k~gt~EvFa~~LPG~PD 268 (376)
T KOG1520|consen 198 TGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETTT------ARIKRYWIKGPKAGTSEVFAEGLPGYPD 268 (376)
T ss_pred ccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeecc------ceeeeeEecCCccCchhhHhhcCCCCCc
Confidence 5679999998877 566666666668899999999999988653 3677776666543 1233323456778
Q ss_pred CeEECCCCCEEEEE
Q 004971 612 HPYFSPDGKSIVFT 625 (721)
Q Consensus 612 ~~~~SpDG~~l~~~ 625 (721)
++..+++|.+.+-.
T Consensus 269 NIR~~~~G~fWVal 282 (376)
T KOG1520|consen 269 NIRRDSTGHFWVAL 282 (376)
T ss_pred ceeECCCCCEEEEE
Confidence 89999999765444
No 348
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.90 E-value=6.2 Score=43.58 Aligned_cols=156 Identities=10% Similarity=-0.037 Sum_probs=90.6
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC-CcEEEEEC-CCC
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF-PGVYVVNS-DGS 449 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~-~~l~v~d~-~~g 449 (721)
...++.|+||+.+++... . ..+++....+....+ .....-..|.|.++| ++-.+.+ ....+... .+|
T Consensus 336 ~~s~avS~dg~~~A~v~~--~-------~~l~vg~~~~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G 404 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA--S-------GVWSVGDGDRDAVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDG 404 (557)
T ss_pred cccceEcCCCceEEEEcC--C-------ceEEEecCCCcceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCC
Confidence 357899999999998743 1 234554333221111 111123458898888 5554422 22222222 234
Q ss_pred ceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcceE
Q 004971 450 NRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFPS 517 (721)
Q Consensus 450 ~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~ 517 (721)
+...+. .+.+..+..|+||.++++.... ...+++.|-.+..+++ ....| .........+.
T Consensus 405 ~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R~~~----~P~~L~~~p~~l~~~l~~v~sl~ 476 (557)
T PRK13615 405 VGHPVAVSWTATGRVVSLEVARDGARVLVQLET----GAGPQLLVASIVRDGG----VPTSLTTTPLELLASPGTPLDAT 476 (557)
T ss_pred ceEEeeccccCCCeeEEEEeCCCccEEEEEEec----CCCCEEEEEEEEeCCC----cceEeeeccEEcccCcCcceeeE
Confidence 444444 3568899999999999998642 1345676665655332 22333 22224667789
Q ss_pred EccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
|..+++.++......++..++++.+.+..
T Consensus 477 W~~~~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 477 WVDELDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred EcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence 99988855554333455788999998554
No 349
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.82 E-value=2.7 Score=49.04 Aligned_cols=201 Identities=9% Similarity=0.003 Sum_probs=114.4
Q ss_pred CcCCCEEEEE-eCCcEEEEECCC---C--ce-EEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 427 SPKGDRIAFV-EFPGVYVVNSDG---S--NR-RQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 427 SpDG~~la~~-~~~~l~v~d~~~---g--~~-~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
++++..++.. .++.+.+|++.. + .. ..++ ...+..+..-+.|..+|+.+ .++.+++.+++..
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------KDGSVRVLRIDHY 1130 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------CCCeEEEEEcccc
Confidence 4444666665 478899999742 1 11 1122 23445566667788888875 6788998888863
Q ss_pred CCCCc-cceEEcccCC--CCCcc-eEEcc-CCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 496 DVDGV-SAVRRLTTNG--KNNAF-PSVSP-DGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 496 ~~~~~-~~~~~l~~~~--~~~~~-~~~Sp-Dg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
..... ....++.... +.+.. -++.. ++. .|+++.. ...|..||+......-..+.....+.++.++.+|-+
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~---~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD---LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEe---ccceEEecchhhhhHHhhhcCccccceeEEEecCCc
Confidence 21000 0111111111 11111 12322 333 5666666 678999998765421122223334667899999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE---CCCCCEEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF---SPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~---SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 646 (721)
.|++.+..++ .+-+||+.=+.+..-...++...+..+.. .|...++++++.... +
T Consensus 1208 ~WlviGts~G-------~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~---------------n 1265 (1431)
T KOG1240|consen 1208 NWLVIGTSRG-------QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN---------------N 1265 (1431)
T ss_pred eEEEEecCCc-------eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC---------------C
Confidence 9999999886 79999997655443333223334444443 344456666555332 2
Q ss_pred cEEEEEcCCCCeE
Q 004971 647 EIFKIKLDGSDLK 659 (721)
Q Consensus 647 ~l~~~d~~~~~~~ 659 (721)
+|-.|++.+|.-+
T Consensus 1266 evs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQ 1278 (1431)
T ss_pred ceeeeecccCcce
Confidence 5888888887443
No 350
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.61 E-value=4.8 Score=39.16 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=82.4
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCC--CCCCCCCcEEEEEEE
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGP--EFASESSEVDIISIN 493 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~--~~~~~~~~~~i~~~~ 493 (721)
..+...|||..-+.-....|..+|.++.+.++.. ..+.....|.++|..-+....+- ++....+.+++|...
T Consensus 107 hgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 107 HGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP 186 (353)
T ss_pred ceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC
Confidence 4467788886433333337777887777766554 45667899999996554443221 011112223333322
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEE
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWI 572 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l 572 (721)
. ....+.++..|||. +.|.+-. .+.|-++|..++....+ ..... ......+.-+|-|+.-
T Consensus 187 q---------------G~gpyGi~atpdGs-vwyasla--gnaiaridp~~~~aev~-p~P~~~~~gsRriwsdpig~~w 247 (353)
T COG4257 187 Q---------------GGGPYGICATPDGS-VWYASLA--GNAIARIDPFAGHAEVV-PQPNALKAGSRRIWSDPIGRAW 247 (353)
T ss_pred C---------------CCCCcceEECCCCc-EEEEecc--ccceEEcccccCCccee-cCCCcccccccccccCccCcEE
Confidence 1 13566789999998 4444432 56788999888863211 12221 1111233334556532
Q ss_pred EEEEccCCCCCCceeEEEEecCCCce
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+ +.- +...++++|.....-
T Consensus 248 i--ttw-----g~g~l~rfdPs~~sW 266 (353)
T COG4257 248 I--TTW-----GTGSLHRFDPSVTSW 266 (353)
T ss_pred E--ecc-----CCceeeEeCcccccc
Confidence 2 222 334899999876543
No 351
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.38 E-value=7.3 Score=40.30 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=74.3
Q ss_pred CCCCceeCcCCCEEEEE-eC------CcEEEEECCCCceEEEe-----------------ecCceeeEEcCCCCeEEEEe
Q 004971 420 DGSFPSFSPKGDRIAFV-EF------PGVYVVNSDGSNRRQVY-----------------FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~-~~------~~l~v~d~~~g~~~~l~-----------------~~~~~~~~~spdg~~la~~~ 475 (721)
+...+++.++|..++.. .. ..|+.++.++.....+. +.....++++|||+.|+++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 34456777777655444 35 78999998844433331 12345799999999888877
Q ss_pred cCCCCCCCC-------CcEEEEEEEccCCCCc-cc-eEEccc-----CCCCCcceEEccCCCEEEEEEee----CCceeE
Q 004971 476 GGPEFASES-------SEVDIISINVDDVDGV-SA-VRRLTT-----NGKNNAFPSVSPDGKWIVFRSTR----TGYKNL 537 (721)
Q Consensus 476 ~~~~~~~~~-------~~~~i~~~~~~~~~~~-~~-~~~l~~-----~~~~~~~~~~SpDg~~l~~~s~~----~g~~~l 537 (721)
..+...... ...+|+.++....... .. .-++.. ....+..+.+-+|++.|+..... ....+|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 544222211 2377888876542100 11 122222 23456678899999977665442 235589
Q ss_pred EEEECCC
Q 004971 538 YIMDAEG 544 (721)
Q Consensus 538 ~~~d~~~ 544 (721)
|.+++..
T Consensus 246 ~~v~l~~ 252 (326)
T PF13449_consen 246 YRVDLSD 252 (326)
T ss_pred EEEEccc
Confidence 9998764
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.33 E-value=0.32 Score=52.84 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=72.7
Q ss_pred eeCcCCCEEEEE-eCCcEEEEECCCCceEEEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 425 SFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 425 ~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
.++..+++|++. +.+.||+++-.++..+.+.. +.......|++...+|+++ ..+.+.++.++....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt-------~~g~V~v~ql~~~~p-- 110 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT-------ASGRVSVFQLNKELP-- 110 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc-------CCceEEeehhhccCC--
Confidence 455567788887 57889999988888766652 3344567788888887775 467777777766332
Q ss_pred ccceEEccc----CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 500 VSAVRRLTT----NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 500 ~~~~~~l~~----~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
.....++. +...+..+.||+|++++++... .+.|....+++
T Consensus 111 -~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~---~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 -RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS---QGKVVLTELDS 155 (726)
T ss_pred -CcceeeccccccCCceEEEEEecccccEEeecCC---CceEEEEEech
Confidence 22223332 2346788999999999998875 45566655554
No 353
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=94.28 E-value=1.4 Score=46.72 Aligned_cols=189 Identities=10% Similarity=0.060 Sum_probs=109.6
Q ss_pred ceeCcCCCEEEEEe-CCcEEEEECC------CCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 424 PSFSPKGDRIAFVE-FPGVYVVNSD------GSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 424 ~~~SpDG~~la~~~-~~~l~v~d~~------~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
..+.|-...|+.++ ++.|.+|++. .+...++. .+.+..+..++.++.++..+ .++.++.|.
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-------~Dg~I~~w~ 372 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-------IDGTIRCWN 372 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-------cCceeeeec
Confidence 44555444555553 6677888872 12233333 56778899999999998875 689999997
Q ss_pred EEccCCC-C----ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce----------------
Q 004971 492 INVDDVD-G----VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL---------------- 550 (721)
Q Consensus 492 ~~~~~~~-~----~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~---------------- 550 (721)
+..+... . ......+..+...++.+++|+...+|+..+. +..++.|+.....+...
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~---DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS---DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC---CceEEeeccCCcCccccCCccccCCcceEeecc
Confidence 7643220 0 0112233445556777888888888887766 67788877654432000
Q ss_pred -------------------------EECcCC-----C---cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 551 -------------------------HRLTEG-----P---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 551 -------------------------~~l~~~-----~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
..+... . -.+..+.+.|.+. +.|+.... ..|..+|..+++
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed------~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHED------RSIRFFDNKTGK 522 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccC------Cceecccccccc
Confidence 000000 0 0122334445443 33333221 367777776665
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+..-.. .+...+.++++.|+|-+|...+.+..
T Consensus 523 ~l~s~~-a~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 523 ILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred cchhee-eccceecceeecCCCceEEeecCCce
Confidence 432211 15567788999999999887776653
No 354
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=94.07 E-value=0.15 Score=33.45 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=30.5
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
+..+..+...+..++|+|+++.|+.++.+. .|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-------~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDG-------TIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTS-------EEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCC-------EEEEEC
Confidence 556667777889999999999999999885 888886
No 355
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.01 E-value=4.7 Score=45.00 Aligned_cols=196 Identities=9% Similarity=0.077 Sum_probs=117.0
Q ss_pred ceeCcCCCEEEEE--eCCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 424 PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 424 ~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
+.|.--.+++++. ....|..-.+.+++++.+.. .....++...-++.++++- ....++.+-.++-.
T Consensus 1030 idfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtD------S~lD~IevA~LdG~--- 1100 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTD------SVLDKIEVALLDGS--- 1100 (1289)
T ss_pred eecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeec------cccchhheeecCCc---
Confidence 3454445555555 35667778888888877772 2233455655677777763 23345555554432
Q ss_pred CccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 499 GVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 499 ~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
..+.|...+ .+...+...+=+..|++......+..|-..+.++...+ ..+....+-.+.+.|.|..+.|.+...
T Consensus 1101 ---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrR--ilin~DigLPNGLtfdpfs~~LCWvDA 1175 (1289)
T KOG1214|consen 1101 ---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRR--ILINTDIGLPNGLTFDPFSKLLCWVDA 1175 (1289)
T ss_pred ---eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccce--EEeecccCCCCCceeCcccceeeEEec
Confidence 333343333 56677888888889999987666777888888755421 112222233467899999998888776
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.. .++-....++...+.+.. ....-++...+++.+|++.-+.+ .|..+++-+++
T Consensus 1176 Gt------~rleC~~p~g~gRR~i~~----~LqYPF~itsy~~~fY~TDWk~n----------------~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1176 GT------KRLECTLPDGTGRRVIQN----NLQYPFSITSYADHFYHTDWKRN----------------GVVSVNKHSGQ 1229 (1289)
T ss_pred CC------cceeEecCCCCcchhhhh----cccCceeeeeccccceeeccccC----------------ceEEeeccccc
Confidence 43 244444443333333322 22344566778888888766553 37778876665
Q ss_pred eE
Q 004971 658 LK 659 (721)
Q Consensus 658 ~~ 659 (721)
.+
T Consensus 1230 ~t 1231 (1289)
T KOG1214|consen 1230 FT 1231 (1289)
T ss_pred cc
Confidence 43
No 356
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=93.83 E-value=0.55 Score=37.61 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=41.4
Q ss_pred eeEEccCCCEEEEEEccCCC-----------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 562 MCNWSPDGEWIAFASDRDNP-----------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~-----------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.+..++++..|+|+.....- ......|+.||+.+++.+.+... -...+.+++|+|+++|+++....
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEEeccC
Confidence 45666775567776653211 12446899999999988777652 24567899999999998877654
No 357
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.47 E-value=5.1 Score=39.25 Aligned_cols=165 Identities=9% Similarity=-0.042 Sum_probs=92.3
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~ 559 (721)
..+.+.+|+.+.... ....+.|.... .....+.|++-|..+++... +.++-.++......+.+..+..+...
T Consensus 93 a~G~i~~~r~~~~~s--s~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDES--SVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred ccceEEEEeecccee--eeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEEEecceeeeeeccccccccee
Confidence 356777777765431 01122222221 12345789999998776654 34444554443332112234445555
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cCCCCCcCCeEECC-CCCEEEEEEecCCCcCCCCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSP-DGKSIVFTSDYGGISAEPIS 637 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~ 637 (721)
..-..|+-...-|+|...+. ..|..||+.-.+...... ..|...+.++.-|| ++.+|+..+.+..
T Consensus 168 ~Wta~f~~~~pnlvytGgDD------~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~------- 234 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDD------GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC------- 234 (339)
T ss_pred eeeeecccCCCceEEecCCC------ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-------
Confidence 55666765555566666553 378889987333221110 01334455555454 5677777777663
Q ss_pred CCCCCCCCccEEEEEcCC-CCeEEeccCCCCCCCceecC
Q 004971 638 TPHQYQPYGEIFKIKLDG-SDLKRLTQNSFEDGTPAWGP 675 (721)
Q Consensus 638 ~~~~~~~~~~l~~~d~~~-~~~~~lt~~~~~~~~~~~sp 675 (721)
|.+||+.. +++..=+..+++++...++|
T Consensus 235 ----------i~~~DtRnm~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 235 ----------IRVLDTRNMGKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred ----------eeeeehhcccCccccCccccceEEEEecc
Confidence 88888763 55555556677888888888
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=5.9 Score=40.56 Aligned_cols=211 Identities=13% Similarity=0.052 Sum_probs=105.3
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+..++..+.+++||| ..+-|+..... ...|.++|+++........ ....++..+|.-|....+|+...++
T Consensus 189 lp~~g~~IrdlafSp-~~~GLl~~asl----~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~nG-- 258 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSP-FNEGLLGLASL----GNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQNG-- 258 (463)
T ss_pred ccccchhhhhhccCc-cccceeeeecc----CceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccCc--
Confidence 344455678999999 88744332222 2349999999876333221 1355778899999999999877665
Q ss_pred CCCCcceeEEEeccCCCCcceecccCC-CC----------ceeCcCCCEEEEEeCCcEEEEECCC--CceE---EEe-ec
Q 004971 395 REDGNNQLLLENIKSPLPDISLFRFDG-SF----------PSFSPKGDRIAFVEFPGVYVVNSDG--SNRR---QVY-FK 457 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~----------~~~SpDG~~la~~~~~~l~v~d~~~--g~~~---~l~-~~ 457 (721)
-+++.|.+.+...+....... .. ...++-|..|++.. ..+..|.... +... ++. .+
T Consensus 259 ------~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 259 ------MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred ------eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCcccccCCCc
Confidence 367777766543322211100 00 02233344444442 2233333322 2221 222 45
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEE--EEEEEccCC-CCccceEEcccCC----CCCcceEEccCCCEEEEEEe
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVD--IISINVDDV-DGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~--i~~~~~~~~-~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~ 530 (721)
...++.+.+-.+.++.+.+.. ......+ +..++...+ -...+.+...... .......-.+|...|+...+
T Consensus 332 ~cismqy~~~snh~l~tyRs~---pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSN---PNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred ceeeeeecCccceEEEEecCC---CCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 566777777777777765321 0111111 112221111 0000111111110 00111223567776666554
Q ss_pred eCCceeEEEEECCCCcc
Q 004971 531 RTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 531 ~~g~~~l~~~d~~~g~~ 547 (721)
...+|.++|+.+.+.
T Consensus 409 --~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 409 --STNELILQDPHSFEV 423 (463)
T ss_pred --CcceeEEeccchhhe
Confidence 267899999998874
No 359
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.42 E-value=11 Score=39.21 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=82.2
Q ss_pred CEEEEE-eCCcEEEEECCCCceEEEeecCcee----eEEcCCCCe--EEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 431 DRIAFV-EFPGVYVVNSDGSNRRQVYFKNAFS----TVWDPVREA--VVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 431 ~~la~~-~~~~l~v~d~~~g~~~~l~~~~~~~----~~~spdg~~--la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
+.|+-+ ....|++||+++...+.+..+.... ..|.-.|+. |++++++. .....+.+|.++...+ .+
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~---~g~n~l~~f~id~~~g----~L 141 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRS---DGRNSLRLFRIDPDTG----EL 141 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-C---CCT-EEEEEEEETTTT----EE
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCc---CCCCeEEEEEecCCCC----cc
Confidence 344444 4678999999999887776333222 122225655 56666421 1135799999986543 55
Q ss_pred EEcccCC-------CCCcceEE--cc-CCCEEEEEEeeCCceeEEEEE-CCCCcc--cceEECcCCCcCceeeEEccCCC
Q 004971 504 RRLTTNG-------KNNAFPSV--SP-DGKWIVFRSTRTGYKNLYIMD-AEGGEG--YGLHRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 504 ~~l~~~~-------~~~~~~~~--Sp-Dg~~l~~~s~~~g~~~l~~~d-~~~g~~--~~~~~l~~~~~~~~~~~~SpDG~ 570 (721)
+.+.... ...+.+++ +| +|+..+|...++|...-|.+. -..|.. +.++.+.-. .....++....-.
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccC
Confidence 5554321 12334444 33 688888888877765555543 333432 224444432 2346788887777
Q ss_pred EEEEEEccCCCCCCceeEEEEecC
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+|+++..+. .||.|+.+
T Consensus 221 ~LYvgEE~~-------GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDV-------GIWRYDAE 237 (381)
T ss_dssp EEEEEETTT-------EEEEEESS
T ss_pred CEEEecCcc-------EEEEEecC
Confidence 888888764 89999986
No 360
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.35 E-value=2.8 Score=42.89 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-----cCceeeEEccCCCEEEEEEccCCC----
Q 004971 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCNWSPDGEWIAFASDRDNP---- 581 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~---- 581 (721)
++...++|...|.-|+++.. ...|+.++..++. .+.+.... ...+.+..+++| .|+|+.....-
T Consensus 115 GRPLGl~f~~~ggdL~VaDA---YlGL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA---YLGLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRD 187 (376)
T ss_pred CCcceEEeccCCCeEEEEec---ceeeEEECCCCCc---ceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhh
Confidence 67788999999988888877 7789999999876 33443221 112455666644 35554432100
Q ss_pred -------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 582 -------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 582 -------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.....+++.||..++..+.+.. .-...+.++.|||+.+++++....
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld--~L~F~NGlaLS~d~sfvl~~Et~~ 240 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLLD--GLYFPNGLALSPDGSFVLVAETTT 240 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhhh--cccccccccCCCCCCEEEEEeecc
Confidence 0123468899988877666553 234457899999999998876544
No 361
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=93.33 E-value=0.2 Score=32.90 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
....+..+...+..++|+|+++.|+..+. +..|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~---D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSS---DGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEET---TSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCC---CCEEEEEC
Confidence 44566777788999999999999999997 78899986
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.18 E-value=8.5 Score=37.10 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
-|++++... . .+.|++.+..+|...... ...+.--..+...+++..|+..+.+.. +|..|.++.
T Consensus 62 vgdfVV~GC-y----~g~lYfl~~~tGs~~w~f--~~~~~vk~~a~~d~~~glIycgshd~~---------~yalD~~~~ 125 (354)
T KOG4649|consen 62 VGDFVVLGC-Y----SGGLYFLCVKTGSQIWNF--VILETVKVRAQCDFDGGLIYCGSHDGN---------FYALDPKTY 125 (354)
T ss_pred ECCEEEEEE-c----cCcEEEEEecchhheeee--eehhhhccceEEcCCCceEEEecCCCc---------EEEeccccc
Confidence 455666543 2 233899999998532221 111222234667788888887666554 444444332
Q ss_pred CCcceecccCC---CCceeCc-CCCEEEEE-eCCcEEEEECCCC
Q 004971 411 LPDISLFRFDG---SFPSFSP-KGDRIAFV-EFPGVYVVNSDGS 449 (721)
Q Consensus 411 ~~~~~~~~~~~---~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g 449 (721)
- -+......+ ..|++.| ++. |+++ ..+.+.....+.+
T Consensus 126 ~-cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 126 G-CVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPY 167 (354)
T ss_pred c-eEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCC
Confidence 1 111111111 2356667 453 4444 4555555555544
No 363
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.02 E-value=5.1 Score=42.99 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=65.8
Q ss_pred EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-----CCCcCceeeEEccCC------CEEE
Q 004971 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-----EGPWSDTMCNWSPDG------EWIA 573 (721)
Q Consensus 505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-----~~~~~~~~~~~SpDG------~~l~ 573 (721)
.+...-.....++|.|||+.|+.... ..+|++++..++....+..+. .+......++++||= ++|+
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~---~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERA---TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEec---CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 33333346778999999976654442 367999987665422222222 123445678898873 4566
Q ss_pred EEEccCCCCC---CceeEEEEecCCC-----ceEEeeecC---CCCCcCCeEECCCCCEEEEEEecC
Q 004971 574 FASDRDNPGS---GSFEMYLIHPNGT-----GLRKLIQSG---SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 574 ~~~~~~~~~~---~~~~i~~~d~~~~-----~~~~l~~~~---~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+......... ....|.++.++.. ..+.+.... ....-..+.|.|||+ |+++..+.
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 6543211000 1347877776421 122333211 112345689999997 66655554
No 364
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.01 E-value=0.12 Score=57.28 Aligned_cols=209 Identities=13% Similarity=0.089 Sum_probs=119.9
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
...-++||- +.++|+.... .+.|.++++.+|....- ...|+..+..+.-|.||..++..+.-.... .
T Consensus 1103 ~fTc~afs~-~~~hL~vG~~-----~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~Pl-----s 1169 (1516)
T KOG1832|consen 1103 LFTCIAFSG-GTNHLAVGSH-----AGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPL-----S 1169 (1516)
T ss_pred ceeeEEeec-CCceEEeeec-----cceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCch-----H
Confidence 345678888 8899988543 34599999999974332 345667777788888998877654433311 2
Q ss_pred eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEE--Ee-----ecCceeeEEcCCCCeEE
Q 004971 401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQ--VY-----FKNAFSTVWDPVREAVV 472 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~--l~-----~~~~~~~~~spdg~~la 472 (721)
.+|-..-..+ ....+. ....+.||..-+.-+.. ......+||+.++.+.+ +. ...-....|||+.+.++
T Consensus 1170 aLW~~~s~~~--~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGG--PRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccC--cccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 2332221111 111111 12234555433222222 35678899999887432 22 11224578999998776
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
. ..-+|++.... .++++.... ....-.|+|.|..++..+. +||+.+=+. +..
T Consensus 1247 n------------dGvLWDvR~~~-----aIh~FD~ft-~~~~G~FHP~g~eVIINSE--------IwD~RTF~l--Lh~ 1298 (1516)
T KOG1832|consen 1247 N------------DGVLWDVRIPE-----AIHRFDQFT-DYGGGGFHPSGNEVIINSE--------IWDMRTFKL--LHS 1298 (1516)
T ss_pred e------------CceeeeeccHH-----HHhhhhhhe-ecccccccCCCceEEeech--------hhhhHHHHH--Hhc
Confidence 4 23577776542 333333332 3344589999999998886 677765432 333
Q ss_pred CcCCCcCceeeEEccCCCEEEEE
Q 004971 553 LTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 553 l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
++.- ....+.|...|..+|..
T Consensus 1299 VP~L--dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL--DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Cccc--cceEEEeccCccchhhh
Confidence 3322 22567777777755443
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=11 Score=42.51 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=99.0
Q ss_pred eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCCCC-
Q 004971 425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS-EVDIISINVDDVDG- 499 (721)
Q Consensus 425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~~~- 499 (721)
.|++.+..+++.+ .+.|+.++-.-...+-.. ...+...-|.-+++.+.++..+. . ..+. -+.||.++...+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed-~-~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGED-E-QGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeec-C-CCCceEEEEecccccCCCCC
Confidence 6788887888874 777887764322111111 22234445555665555443211 0 1122 57888886542211
Q ss_pred ccce--EEcccC-----CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCC
Q 004971 500 VSAV--RRLTTN-----GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 500 ~~~~--~~l~~~-----~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~ 570 (721)
+... .++... ......++.|-|=+.+|++-. ++.|.++.-+ -.+.....-...+...++.+++--|++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~---nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT---NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEec---CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 1112 122221 234455688888777777654 4555555321 111001223334566789999999999
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
.++|..... +|..|.+.+..+...+...++.....-++++--..++.+.
T Consensus 185 s~lFv~Tt~-------~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 185 SVLFVATTE-------QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred eeEEEEecc-------eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 877777653 6777777765523222222444555566664322244443
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.80 E-value=2.6 Score=45.43 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=69.5
Q ss_pred CCCceeCcCC-----CEEEEEeCCcEEEEECC--CCce-EEEe----------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 421 GSFPSFSPKG-----DRIAFVEFPGVYVVNSD--GSNR-RQVY----------FKNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 421 ~~~~~~SpDG-----~~la~~~~~~l~v~d~~--~g~~-~~l~----------~~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
+..+.|+|-+ ..||+.....+.+|.+. +.+. +.+. +--.....|.|....|++.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT------- 131 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT------- 131 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe-------
Confidence 3456787653 35666667888888875 2221 1111 11234678999999999886
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
.....-++.+..+.. .++.=....+.+....|.+||++|+++-.. .-+-|+||-.
T Consensus 132 ~~dvSV~~sV~~d~s----rVkaDi~~~G~IhCACWT~DG~RLVVAvGS--sLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSS----RVKADIKTSGLIHCACWTKDGQRLVVAVGS--SLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCc----eEEEeccCCceEEEEEecCcCCEEEEEeCC--eEEEEEecCc
Confidence 334455666766653 333323444677778999999999988642 3477777754
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.59 E-value=19 Score=39.63 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=43.3
Q ss_pred ceeEEEEECCCCcccceEECcCCC--------cCc--eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGP--------WSD--TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~--------~~~--~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
...|+.+|+.+|+. +-+..... ... ..++ -.+..|++.+.++ .||.+|.++|+..--..
T Consensus 365 ~G~l~AlD~~tG~~--~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG-------~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 365 KGGLAALDPKTGKV--VWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADG-------YFRAFDATTGKELWKFR 433 (488)
T ss_pred ceEEEEEeCCCCcE--eeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCC-------eEEEEECCCCceeeEEE
Confidence 45799999999884 22221110 000 1122 2456677766554 89999999997653333
Q ss_pred cCCCCCcCCeE-ECCCCCEEEEEEecC
Q 004971 604 SGSAGRANHPY-FSPDGKSIVFTSDYG 629 (721)
Q Consensus 604 ~~~~~~~~~~~-~SpDG~~l~~~~~~~ 629 (721)
. .......|. +..+|+ +|+.....
T Consensus 434 ~-~~~~~a~P~~~~~~g~-~yv~~~~g 458 (488)
T cd00216 434 T-PSGIQATPMTYEVNGK-QYVGVMVG 458 (488)
T ss_pred C-CCCceEcCEEEEeCCE-EEEEEEec
Confidence 2 222223333 445553 44444433
No 368
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.42 E-value=16 Score=38.42 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=82.1
Q ss_pred CcCCCEEEEE-------eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecC------CCCCC-----
Q 004971 427 SPKGDRIAFV-------EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGG------PEFAS----- 482 (721)
Q Consensus 427 SpDG~~la~~-------~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~------~~~~~----- 482 (721)
-|+|+.++.. ..+.+.++|-++-+.+--- .....++.|.|--+.++.+.-+ ..+..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 4788766665 2467888888765543221 1234578888877776665421 11111
Q ss_pred --CCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEE--ccCCCEEEEEEeeCCceeEEEEEC-CCCcc--cceEEC
Q 004971 483 --ESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSV--SPDGKWIVFRSTRTGYKNLYIMDA-EGGEG--YGLHRL 553 (721)
Q Consensus 483 --~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~--SpDg~~l~~~s~~~g~~~l~~~d~-~~g~~--~~~~~l 553 (721)
-...+++|++.... ..+.+.-+. .....+.| .|+..+=++...- ...||+|-. +.++- +++..+
T Consensus 218 ~~yG~~l~vWD~~~r~-----~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL--ss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRK-----LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL--SSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp H-S--EEEEEETTTTE-----EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE
T ss_pred ccccCeEEEEECCCCc-----EeeEEecCCCCCceEEEEecCCCCccceEEEEec--cceEEEEEEcCCCCeeeeEEEEC
Confidence 13456777765432 333343332 23334444 4555554444332 456666644 23321 112222
Q ss_pred cCC-----------------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-c---C-------
Q 004971 554 TEG-----------------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-S---G------- 605 (721)
Q Consensus 554 ~~~-----------------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~---~------- 605 (721)
... +.-++.+..|.|.++|+++..-. ..|..||+.....-+++- . +
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~ 364 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDH 364 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC------CcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence 211 22357889999999999999764 389999997654333321 1 0
Q ss_pred -------CCCCcCCeEECCCCCEEEEEEec
Q 004971 606 -------SAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 606 -------~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
..+...-+..|-|||+||+++.-
T Consensus 365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 365 PVVKGKRLRGGPQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp TTS------S----EEE-TTSSEEEEE---
T ss_pred ccccccccCCCCCeEEEccCCeEEEEEeec
Confidence 11223567899999999998764
No 369
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.22 E-value=2 Score=44.52 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=68.3
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECc----CCCcCceeeEEccC---CCEEEEEEcc--CCCC
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLT----EGPWSDTMCNWSPD---GEWIAFASDR--DNPG 582 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~----~~~~~~~~~~~SpD---G~~l~~~~~~--~~~~ 582 (721)
...++|.|||+.++ +. + ...|++++.+ +.. ..+..+. .+......++++|+ ..+|++.... ....
T Consensus 4 P~~~a~~pdG~l~v-~e-~--~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AE-R--SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEETTSCEEE-EE-T--TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeCCCcEEE-Ee-C--CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 45689999997654 33 2 5789999843 432 2233332 22334567888885 3455554442 1111
Q ss_pred CCceeEEEEecCCC-----ceEEeeec-CC----CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 583 SGSFEMYLIHPNGT-----GLRKLIQS-GS----AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 583 ~~~~~i~~~d~~~~-----~~~~l~~~-~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
.....|.++....+ ..+.+... .. ......+.|.||| +|+++..+.+.. +.. .......+.|.+++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~-~~~--~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGND-DNA--QDPNSLRGKILRID 154 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTG-GGG--CSTTSSTTEEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCc-ccc--cccccccceEEEec
Confidence 23457887777554 12222211 11 1223458999999 666666555431 000 01122356788888
Q ss_pred cCCC
Q 004971 653 LDGS 656 (721)
Q Consensus 653 ~~~~ 656 (721)
.+++
T Consensus 155 ~dG~ 158 (331)
T PF07995_consen 155 PDGS 158 (331)
T ss_dssp TTSS
T ss_pred ccCc
Confidence 8765
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.20 E-value=2.7 Score=48.06 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC-------EEEEEEeeCCceeEEEEECCCCcccceEECcC--
Q 004971 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK-------WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-- 555 (721)
Q Consensus 485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~-------~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-- 555 (721)
..-.||.+|+..+ ..+..+..+. ...-..+.|+.| ..++.-+ ...|++||+.-...+ +..-..
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k-~v~~~~k~ 573 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNK-LVDSQSKQ 573 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCC-CcceeEecccccccccCCCceEEEEC---CCceEEeccCCCCCc-eeeccccc
Confidence 4557888888765 2333343333 111234555433 1122222 578999998743211 111111
Q ss_pred --CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 556 --GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 556 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
.......++-+.+| +||+++..+ .|.+||--+...+.+++ +.+..+.++..|.||+||+.+...
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G-------~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKG-------DIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCC-------cEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence 11112345556666 589999886 89999865544444443 246678899999999999876654
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.07 E-value=6.7 Score=40.67 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEE
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i 489 (721)
..++|.|||+.++....+.|++++.++.....+. ......+++.|+ ..+|++...............|
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v 84 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV 84 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred eEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence 3478999997666556889999994443323332 234467888884 3455544321101112334556
Q ss_pred EEEEccCCC-CccceEEc----cc---CCCCCcceEEccCCCEEEEEEeeC-----------CceeEEEEECCCCccc--
Q 004971 490 ISINVDDVD-GVSAVRRL----TT---NGKNNAFPSVSPDGKWIVFRSTRT-----------GYKNLYIMDAEGGEGY-- 548 (721)
Q Consensus 490 ~~~~~~~~~-~~~~~~~l----~~---~~~~~~~~~~SpDg~~l~~~s~~~-----------g~~~l~~~d~~~g~~~-- 548 (721)
.++...... .....+.+ .. .......++|.||| +|++..... ....|.+++.++.-+.
T Consensus 85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dn 163 (331)
T PF07995_consen 85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADN 163 (331)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTS
T ss_pred EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCC
Confidence 666554320 01111222 22 11233458999999 566554322 1347888987643100
Q ss_pred --------ceEECcCCCcCceeeEEccC-CCEEEEEEccCCCCCCceeEEEEe
Q 004971 549 --------GLHRLTEGPWSDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 549 --------~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
.......+-.....++|.|. |+ |+...... .....|.+..
T Consensus 164 P~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~---~~~dein~i~ 212 (331)
T PF07995_consen 164 PFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGP---DGWDEINRIE 212 (331)
T ss_dssp TTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-S---SSSEEEEEE-
T ss_pred ccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCC---CCCcEEEEec
Confidence 01111222233467899998 55 44444322 1334555553
No 372
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.90 E-value=17 Score=39.11 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=55.4
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----------ecCceeeEEcCCC------CeEEEEecCCCCCCC
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----------FKNAFSTVWDPVR------EAVVYTSGGPEFASE 483 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----------~~~~~~~~~spdg------~~la~~~~~~~~~~~ 483 (721)
...++|.|||+.|+.-. .+.|++++..++....+. .+....++++||= ++|++......-...
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 34578999996555545 589999987665433221 2345678888874 345554311100000
Q ss_pred -CCcEEEEEEEccCC--CCccceEEcccCC----CCCcceEEccCCCEEEEE
Q 004971 484 -SSEVDIISINVDDV--DGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 484 -~~~~~i~~~~~~~~--~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~ 528 (721)
.....|.++..+.. ........+.... ..-..++|.|||+ |++.
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs 162 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYT 162 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEE
Confidence 02446666654321 0001112222211 2344588999997 5543
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.76 E-value=15 Score=36.71 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCcEEEEEC-CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc----
Q 004971 429 KGDRIAFVEFPGVYVVNS-DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA---- 502 (721)
Q Consensus 429 DG~~la~~~~~~l~v~d~-~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---- 502 (721)
.+++|++....+||++++ .......+. ...+..+...|+-+.|++.+ ++.+.++.++.-.......
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhccccccccccc
Confidence 477888887778999999 444455544 44588888889888888876 3667777665432100000
Q ss_pred ------eEEcccCCCCCcceE---EccCCCEEEEEEeeCCceeEEEEECCC--Ccc-cceEECcCCCcCceeeEEccCCC
Q 004971 503 ------VRRLTTNGKNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEG--GEG-YGLHRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 503 ------~~~l~~~~~~~~~~~---~SpDg~~l~~~s~~~g~~~l~~~d~~~--g~~-~~~~~l~~~~~~~~~~~~SpDG~ 570 (721)
...+.... ....++ -...+.+|+++.. .+|.++.... .+. +..+.+.-. .....+.|. ++
T Consensus 78 ~~~~~~~~~~~~~~-~v~~f~~~~~~~~~~~L~va~k----k~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~ 149 (275)
T PF00780_consen 78 PKSRSLPTKLPETK-GVSFFAVNGGHEGSRRLCVAVK----KKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GN 149 (275)
T ss_pred cccccccccccccC-CeeEEeeccccccceEEEEEEC----CEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CC
Confidence 00111111 122222 2234445555553 3455544433 222 224444432 344678888 56
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
.|+++..+ ..+++|+.++....+..
T Consensus 150 ~i~v~~~~--------~f~~idl~~~~~~~l~~ 174 (275)
T PF00780_consen 150 KICVGTSK--------GFYLIDLNTGSPSELLD 174 (275)
T ss_pred EEEEEeCC--------ceEEEecCCCCceEEeC
Confidence 78888765 68999999888877764
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.70 E-value=2.1 Score=44.75 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=59.9
Q ss_pred CcEEEEECCCCceEEEe-e----cCceeeEE--cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--
Q 004971 439 PGVYVVNSDGSNRRQVY-F----KNAFSTVW--DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-- 509 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~-~----~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-- 509 (721)
..|.+||+...+..+.. - ..+..+.| .|+..+-++.+. -..++.+|.-+.++. ....+.++-.
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a------Lss~i~~~~k~~~g~--W~a~kVi~ip~~ 293 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA------LSSSIWRFYKDDDGE--WAAEKVIDIPAK 293 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTE--EEEEEEEEE--E
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe------ccceEEEEEEcCCCC--eeeeEEEECCCc
Confidence 46888999888865544 1 12334444 555655555542 223343333322221 1111111111
Q ss_pred -----------------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc-ccceEECcCC---------------
Q 004971 510 -----------------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLTEG--------------- 556 (721)
Q Consensus 510 -----------------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~~~--------------- 556 (721)
...+..+.+|.|.|+|++.... ...|+.||+..-. ++.+.++.-+
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 1234667899999999999875 4568888887532 2223222211
Q ss_pred -CcCceeeEEccCCCEEEEEEc
Q 004971 557 -PWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 557 -~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.+....+..|-||++|+++..
T Consensus 372 l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --S----EEE-TTSSEEEEE--
T ss_pred cCCCCCeEEEccCCeEEEEEee
Confidence 112356789999999999875
No 375
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.64 E-value=22 Score=38.15 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=24.4
Q ss_pred cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
..+..++.||+|+.||+....+ .+++++.+-.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g-------~l~v~ssDf~ 248 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSG-------NLWVVSSDFS 248 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCC-------CEEEEECccc
Confidence 3467899999999999988764 6777665443
No 376
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.40 E-value=19 Score=41.93 Aligned_cols=202 Identities=14% Similarity=0.057 Sum_probs=113.8
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
..+.++|=...|+... +..|.+||-..++.-.-+ ...+..+.+- .+...|..+. ..++.++||+--
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta------s~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA------SSDGVIRIWKDY 1141 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee------ccCceEEEeccc
Confidence 3456677666777775 778999998766542222 2244555443 3344444443 367899999765
Q ss_pred ccCCCCccceEEcccC----------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc-Ccee
Q 004971 494 VDDVDGVSAVRRLTTN----------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW-SDTM 562 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~----------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~ 562 (721)
.... .+.+-++.- .+...-..|-....+|++..+ -..|.+||...... ...+..+.. .++.
T Consensus 1142 ~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd---~r~IRIWDa~~E~~--~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1142 ADKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD---VRSIRIWDAHKEQV--VADIPYGSSTLVTA 1213 (1387)
T ss_pred cccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---eeEEEEEeccccee--EeecccCCCcccee
Confidence 4431 122222211 112233567776667776665 67899999986543 555554322 2233
Q ss_pred eEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCce---EEeeecCCCCC--cCCeEECCCCCE-EEEEEecCCCcCCC
Q 004971 563 CNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL---RKLIQSGSAGR--ANHPYFSPDGKS-IVFTSDYGGISAEP 635 (721)
Q Consensus 563 ~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~--~~~~~~SpDG~~-l~~~~~~~~~~~~~ 635 (721)
++-+ +.|..|+.+..++ .|.+||...... ...... |... +.++.+-+.|-. |+..+.++
T Consensus 1214 LS~~~~~gn~i~AGfaDG-------svRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G------ 1279 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADG-------SVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDG------ 1279 (1387)
T ss_pred ecccccCCceEEEeecCC-------ceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCC------
Confidence 3222 2368888888875 788888654332 222222 3333 667777776633 66555544
Q ss_pred CCCCCCCCCCccEEEEEcCC-CCeEEec
Q 004971 636 ISTPHQYQPYGEIFKIKLDG-SDLKRLT 662 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~-~~~~~lt 662 (721)
+|+.+|+.. .....++
T Consensus 1280 -----------~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1280 -----------DIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred -----------eEEEEecccCcccccce
Confidence 599999877 3333333
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.38 E-value=3.2 Score=47.50 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=43.9
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.+-+.+| +||+++. .+.|++||--+... -+.+..-...+.++..+.||+||+.+... .|.+++.
T Consensus 583 ~aTt~~G-~iavgs~---~G~IRLyd~~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~t--------yLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSN---KGDIRLYDRLGKRA--KTALPGLGDPIIGIDVTADGKWILATCKT--------YLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeC---CCcEEeecccchhh--hhcCCCCCCCeeEEEecCCCcEEEEeecc--------eEEEEEE
Confidence 4455555 5888887 77899998654331 22333334567899999999999988865 5777764
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=35 Score=38.83 Aligned_cols=223 Identities=15% Similarity=0.101 Sum_probs=115.8
Q ss_pred cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEE-Ee-----CC-cEEEEEC
Q 004971 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAF-VE-----FP-GVYVVNS 446 (721)
Q Consensus 375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~-~~-----~~-~l~v~d~ 446 (721)
-.|++.+..|++....+. ++..+-.-.. ..+.....+....-|.-+++.+.+ ++ +. -|.+|++
T Consensus 29 sc~~s~~~~vvigt~~G~---------V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGR---------VVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred eEEcCCCceEEEeecccc---------EEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 468888888888777665 2222211111 111111111111223444433333 31 22 5788887
Q ss_pred CC---Cc-eEE-----Ee-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC
Q 004971 447 DG---SN-RRQ-----VY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510 (721)
Q Consensus 447 ~~---g~-~~~-----l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 510 (721)
+- ++ +.- +. ......++.|.|-+.+++.- .++.+.++.-|.-.. -.....-...+.
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf-------~nG~V~~~~GDi~RD-rgsr~~~~~~~~ 171 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF-------TNGLVICYKGDILRD-RGSRQDYSHRGK 171 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe-------cCcEEEEEcCcchhc-cccceeeeccCC
Confidence 53 22 221 22 12345678888877777764 456676665543221 001222223344
Q ss_pred CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
..+..+++--|++.++|+.. ..++..+.+.+..+ ....+..+.....--++++-...++++... .||.
T Consensus 172 ~pITgL~~~~d~~s~lFv~T---t~~V~~y~l~gr~p-~~~~ld~~G~~lnCss~~~~t~qfIca~~e--------~l~f 239 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVAT---TEQVMLYSLSGRTP-SLKVLDNNGISLNCSSFSDGTYQFICAGSE--------FLYF 239 (933)
T ss_pred CCceeeEEecCCceeEEEEe---cceeEEEEecCCCc-ceeeeccCCccceeeecCCCCccEEEecCc--------eEEE
Confidence 67889999999999777765 55666776663331 133355554444555666544447777665 7999
Q ss_pred EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
|+.++.+.. .+-. -+.-...-|..-|-.|++....+
T Consensus 240 Y~sd~~~~c-faf~--~g~kk~~~~~~~g~~L~v~~~~~ 275 (933)
T KOG2114|consen 240 YDSDGRGPC-FAFE--VGEKKEMLVFSFGLLLCVTTDKG 275 (933)
T ss_pred EcCCCccee-eeec--CCCeEEEEEEecCEEEEEEccCC
Confidence 998764432 2221 12222233443455555544443
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.67 E-value=8.3 Score=43.35 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred cceeccCCeEEE-Ee-ccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 271 WPCWVDESTLFF-HR-KSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 271 ~~~ws~dg~l~~-~~-~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
..+|+|-.-++. +. ...+.|.+.|| .+ .+ ++.+--..+..+.+++|.| .. .+.+. |-..+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-ad---tG-------EPqr~Vt~P~hatSLCWHp-e~-~vLa~----gwe~g~ 82 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-AD---TG-------EPQRDVTYPVHATSLCWHP-EE-FVLAQ----GWEMGV 82 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ec---CC-------CCCcccccceehhhhccCh-HH-HHHhh----ccccce
Confidence 347888754322 11 34557888888 32 22 3444333455667899999 44 23332 223445
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
+.+|...+.+...+. ..+...+..+.|||+|..++.....+.
T Consensus 83 ~~v~~~~~~e~htv~--~th~a~i~~l~wS~~G~~l~t~d~~g~ 124 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVV--ETHPAPIQGLDWSHDGTVLMTLDNPGS 124 (1416)
T ss_pred eEEEecCCceeeeec--cCCCCCceeEEecCCCCeEEEcCCCce
Confidence 778877666544333 456777888999999999987544433
No 380
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.54 E-value=0.25 Score=54.91 Aligned_cols=212 Identities=12% Similarity=0.081 Sum_probs=111.5
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE---eCCc
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV---EFPG 440 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~---~~~~ 440 (721)
..+.....+.+||.+.++|++....+. +.+.+..++ .....-.......+.-|.||+.+... +...
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Ge---------ik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGE---------IKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccce---------EEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 334555678899999999999877766 333333333 22222222223345567788876665 2334
Q ss_pred EEEEECCC-CceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcce
Q 004971 441 VYVVNSDG-SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFP 516 (721)
Q Consensus 441 l~v~d~~~-g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 516 (721)
..+|++.. +..+.-+ .....+.||..-+.-++.+ ......||++..... ..+.++... ......
T Consensus 1169 saLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt-------~~d~a~~YDvqT~~~----l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGT-------EADDALLYDVQTCSP----LQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred HHHhccccccCccccc-cccceeehhhhHHHHHhcc-------cccceEEEecccCcH----HHHhcCcchhhhhhcccc
Confidence 45566542 2222222 2233455555433333332 346778888877542 222233322 334567
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.|||+.+.|+.- =.+||+...+. +.....-. ....-.|.|.|..+++-+. +||+.+-
T Consensus 1237 ~FsP~D~LIlnd--------GvLWDvR~~~a--Ih~FD~ft-~~~~G~FHP~g~eVIINSE------------IwD~RTF 1293 (1516)
T KOG1832|consen 1237 HFSPCDTLILND--------GVLWDVRIPEA--IHRFDQFT-DYGGGGFHPSGNEVIINSE------------IWDMRTF 1293 (1516)
T ss_pred ccCCCcceEeeC--------ceeeeeccHHH--Hhhhhhhe-ecccccccCCCceEEeech------------hhhhHHH
Confidence 899998866522 13678765442 33332221 1234478999998876553 4565553
Q ss_pred ceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 597 GLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
+...-. ..-..+.+.|...|..+|-
T Consensus 1294 ~lLh~V---P~Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1294 KLLHSV---PSLDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHHhcC---ccccceEEEeccCccchhh
Confidence 221111 1223345667767765543
No 381
>PHA03098 kelch-like protein; Provisional
Probab=90.44 E-value=16 Score=40.89 Aligned_cols=114 Identities=12% Similarity=-0.053 Sum_probs=56.3
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 613 (721)
..++++|+.+++-..+..+..... ...+..-+++..+++...... ......+++||..+++-..+..... ......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~ 482 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINAS 482 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccce
Confidence 578999998876322222221111 122333455533443322100 0012359999999887666543211 112222
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
...-+++.+++.+..... ....+++||+++.+...+..
T Consensus 483 ~~~~~~~iyv~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 483 LCIFNNKIYVVGGDKYEY------------YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred EEEECCEEEEEcCCcCCc------------ccceeEEEeCCCCEEEecCC
Confidence 222355544443332211 02369999999888777765
No 382
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=90.12 E-value=3.7 Score=45.21 Aligned_cols=39 Identities=21% Similarity=0.549 Sum_probs=28.9
Q ss_pred EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
+...+...++.+++........+..+.|+|||+.|++.-
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 344566777777776554667789999999999987644
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=4.7 Score=42.82 Aligned_cols=139 Identities=16% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CC
Q 004971 438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KN 512 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~ 512 (721)
...|+.+|++.|+...-- ...+....+.||.+.-=+.+.....-..+..+.-|+....+. ..+.....+. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLAVVQSKQYSTKN 431 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceeeeeecccccccc
Confidence 567999999998753322 334666777777664433322111112233343343333332 0111111111 22
Q ss_pred Ccc-eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 513 NAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 513 ~~~-~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
... .+-.-+ -+|++++. ...|.+||--.... -+.++.-...+.++..+.||+||+.+... .|.++
T Consensus 432 nFsc~aTT~s-G~IvvgS~---~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~t--------yLlLi 497 (644)
T KOG2395|consen 432 NFSCFATTES-GYIVVGSL---KGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATCKT--------YLLLI 497 (644)
T ss_pred ccceeeecCC-ceEEEeec---CCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEeccc--------EEEEE
Confidence 222 233334 46888887 67899998743331 22344434567889999999999988764 56666
Q ss_pred ec
Q 004971 592 HP 593 (721)
Q Consensus 592 d~ 593 (721)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 65
No 384
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=9.6 Score=42.68 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=90.4
Q ss_pred CCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 430 GDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 430 G~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
++.+++.. .+.+++++..+.. +........ .-+|.+++.++ .++++.|..+..+. ....+.-
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS-------~DGkv~I~sl~~~~-----~~~~~df 111 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCS-------DDGKVVIGSLFTDD-----EITQYDF 111 (846)
T ss_pred cceeeeccccceEEEEecCCcc-ccccccccc----ccCCceEEEec-------CCCcEEEeeccCCc-----cceeEec
Confidence 56777775 5688888876653 222211111 45788888886 56777777665543 2222222
Q ss_pred CCCCCcceEEccC-----CCEEEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 509 NGKNNAFPSVSPD-----GKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 509 ~~~~~~~~~~SpD-----g~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
. ......+++|| .++++.... ..|+++.- -+... ...+..+.+.+..+.|- |..||++.+.
T Consensus 112 ~-rpiksial~Pd~~~~~sk~fv~GG~----aglvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~lIAWand~--- 179 (846)
T KOG2066|consen 112 K-RPIKSIALHPDFSRQQSKQFVSGGM----AGLVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GNLIAWANDD--- 179 (846)
T ss_pred C-CcceeEEeccchhhhhhhheeecCc----ceEEEehhhhhcCcc--ceeeecCccceEEEEec--CcEEEEecCC---
Confidence 2 25566788888 444544443 22655432 12221 22455667777888885 8899999987
Q ss_pred CCCceeEEEEecCCCceEEeeecCC-----CCCcCCeEECCCCCEE
Q 004971 582 GSGSFEMYLIHPNGTGLRKLIQSGS-----AGRANHPYFSPDGKSI 622 (721)
Q Consensus 582 ~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~~~~~~~SpDG~~l 622 (721)
.+.+||+..++.....+..+ .-...+..|.++.+.+
T Consensus 180 -----Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 180 -----GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred -----CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 48889987764332222111 1123457788765543
No 385
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=89.63 E-value=12 Score=38.54 Aligned_cols=207 Identities=17% Similarity=0.253 Sum_probs=102.7
Q ss_pred CcEEEEECCCCceEEEe--e----cCceeeEEcCCCCeEEEEecCCCCCCC-----CCcEEEEEEEccCCCCccceEEcc
Q 004971 439 PGVYVVNSDGSNRRQVY--F----KNAFSTVWDPVREAVVYTSGGPEFASE-----SSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~----~~~~~~~~spdg~~la~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
+.||.|++...+.+.+. . ....+++.-|.+...+|.. .+..- ...-.+|.+++.+. +..+|.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG---EfaSPnq~qF~HYkD~W~fd~~tr----kweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG---EFASPNQEQFHHYKDLWLFDLKTR----KWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc---ccCCcchhhhhhhhheeeeeeccc----hheeec
Confidence 46888887777766554 1 1122334445553333332 11111 12345677776553 445554
Q ss_pred cCCC---C--CcceEEccCCCEEEEEEeeCC------ceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCCEEEE
Q 004971 508 TNGK---N--NAFPSVSPDGKWIVFRSTRTG------YKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 508 ~~~~---~--~~~~~~SpDg~~l~~~s~~~g------~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~~l~~ 574 (721)
..++ + ..-.+|- .+.|+|....+. .++||++|+++-+-..+..-...+ ..-..++.+|+|..+++
T Consensus 171 ~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred cCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 4331 1 1113332 355666654432 357999999976532222211011 11245677899998888
Q ss_pred EEccCCC-------CCCceeEEEEecCCCc-----eEEeeecC---CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971 575 ASDRDNP-------GSGSFEMYLIHPNGTG-----LRKLIQSG---SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639 (721)
Q Consensus 575 ~~~~~~~-------~~~~~~i~~~d~~~~~-----~~~l~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~ 639 (721)
+...... +-...++|+.+...+. -.++-..+ ....-.+++..++++.|+|..--+-- .+.. .
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~e-eeeE--s 325 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLE-EEEE--S 325 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccc-ccch--h
Confidence 7642110 1234567777776642 11221111 22233467788999999987643310 0000 1
Q ss_pred CCCCCCccEEEEEcCCCC
Q 004971 640 HQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 640 ~~~~~~~~l~~~d~~~~~ 657 (721)
.+-..+.+||.+|++..+
T Consensus 326 l~g~F~NDLy~fdlt~nr 343 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNR 343 (521)
T ss_pred hhhhhhhhhhheecccch
Confidence 111224579999986543
No 386
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=88.54 E-value=30 Score=34.96 Aligned_cols=96 Identities=9% Similarity=0.196 Sum_probs=61.3
Q ss_pred EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
.+|.....+...+..+..+.-. .+..+-.+...+..+.|.|-.+.|.++..+. .+-+||+.+++-+.....
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-------~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDH-------SVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred EEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccC-------ceEEEeccCCcceeeeec
Confidence 4455554444455555554433 2666667777788899999877776666664 799999988776666555
Q ss_pred CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 605 GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
++...+..+...+--+.|.....++
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDG 262 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCC
Confidence 5666666665555455555544444
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.19 E-value=24 Score=38.41 Aligned_cols=153 Identities=9% Similarity=0.128 Sum_probs=83.8
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEEC--CCCceEEEe-ecCceeeEEcCCC-----CeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNS--DGSNRRQVY-FKNAFSTVWDPVR-----EAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~--~~g~~~~l~-~~~~~~~~~spdg-----~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...++|. ||+.++.. .|+..+- .-|..+.|. -..+..+.|+|-+ ..||+. ....+.+|.+
T Consensus 22 vhGlaWT-DGkqVvLT---~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQ--------HkkhVtVWqL 89 (671)
T PF15390_consen 22 VHGLAWT-DGKQVVLT---DLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQ--------HKKHVTVWQL 89 (671)
T ss_pred ccceEec-CCCEEEEE---eeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEe--------ccceEEEEEe
Confidence 3446774 57665553 1222211 112233343 3456788898853 344443 4678899988
Q ss_pred EccCCCCccce----EEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971 493 NVDDVDGVSAV----RRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 493 ~~~~~~~~~~~----~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp 567 (721)
........... ..+.. ..--.....|+|...-|++...++- .-++-+..++.. ....+ ...+.+.-..|.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSR--VKADI-KTSGLIHCACWTK 165 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCce--EEEec-cCCceEEEEEecC
Confidence 75543110011 11111 1123355789999988888775421 122333333333 12233 4556677889999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
||++|+++-... -+-|+||-.-
T Consensus 166 DG~RLVVAvGSs------LHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSS------LHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCe------EEEEEecCch
Confidence 999999988653 4778898543
No 388
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=87.95 E-value=19 Score=37.34 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc-CC-CCcccCcEEcCCCCEEEEEEeeCCCC---CCC--CcceeE
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV-SP-KTHHLNPFISPDSSRVGYHKCRGGST---RED--GNNQLL 403 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~-~~-~~~~~~~~~Spdg~~l~~~~~~~~~~---~~~--~~~~l~ 403 (721)
++++++| ++ ||++|+++=+...+.... .+ ...-.++..+|+|..++|........ ... ....+|
T Consensus 200 nr~y~Yy--ND-------vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf 270 (521)
T KOG1230|consen 200 NRDYIYY--ND-------VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMF 270 (521)
T ss_pred CCceEEe--ee-------eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeee
Confidence 6677877 32 999999987766665421 01 12234577889999998865543221 000 113455
Q ss_pred EEeccCCCCc-----------ceecccCCCCceeCcCCCEEEEE
Q 004971 404 LENIKSPLPD-----------ISLFRFDGSFPSFSPKGDRIAFV 436 (721)
Q Consensus 404 ~~~~~~~~~~-----------~~~~~~~~~~~~~SpDG~~la~~ 436 (721)
+.+...+... +...+-.+..+++.++++.|+|.
T Consensus 271 ~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 271 LLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred eecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 5554442110 11111223456778888888886
No 389
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.78 E-value=48 Score=36.52 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=51.8
Q ss_pred EEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCC--CC-------CCCCCcEEEEEEEccCCCCcc
Q 004971 433 IAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP--EF-------ASESSEVDIISINVDDVDGVS 501 (721)
Q Consensus 433 la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~--~~-------~~~~~~~~i~~~~~~~~~~~~ 501 (721)
++++ ..+.++.+|..+|+...-.......+..+| ..+++..... .+ ......-.|+-++..++ .
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---K 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC---c
Confidence 4444 367899999999986543311112334444 4454432100 00 00122345666766553 1
Q ss_pred ceEEcccCC--------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 502 AVRRLTTNG--------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 502 ~~~~l~~~~--------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
.+-+..... .........-.+..|++.+. +..||.+|.++|+.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~---dG~l~ald~~tG~~ 428 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA---DGYFRAFDATTGKE 428 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECC---CCeEEEEECCCCce
Confidence 111111110 00111111224566666664 67899999999985
No 390
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=24 Score=33.01 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=81.3
Q ss_pred eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971 437 EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513 (721)
Q Consensus 437 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 513 (721)
+.+.|+++|+.+|+...-. ...++.-....-|.+++... ..++...+|+.+. .+.+......-
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT------w~egvaf~~d~~t--------~~~lg~~~y~G 131 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT------WKEGVAFKYDADT--------LEELGRFSYEG 131 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE------eccceeEEEChHH--------hhhhcccccCC
Confidence 4678999999988743322 11222222222333443332 1223333333322 11222222222
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC---cCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
..-....|++.|...+. ...|+.-|+++=......+++... ...+.+-|- ||. |+.--... ..|.+
T Consensus 132 eGWgLt~d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t------~~I~r 200 (262)
T COG3823 132 EGWGLTSDDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQT------TRIAR 200 (262)
T ss_pred cceeeecCCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeee------cceEE
Confidence 23355567777766554 566777676543221112222211 112344554 554 33222221 26888
Q ss_pred EecCCCceEEeeecC-----------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 591 IHPNGTGLRKLIQSG-----------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~-----------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.+.++|++....... +....+.+++.|++..++.+...-
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w 250 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW 250 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC
Confidence 888888776654321 122346788999887777766543
No 391
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.63 E-value=34 Score=34.59 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=52.7
Q ss_pred ceeeEEcC---CCCeEEEEecCCCCCCCCCcEEEEEEEccC---CC--C----ccceEEcccCCCCCcceEEccCCCEEE
Q 004971 459 AFSTVWDP---VREAVVYTSGGPEFASESSEVDIISINVDD---VD--G----VSAVRRLTTNGKNNAFPSVSPDGKWIV 526 (721)
Q Consensus 459 ~~~~~~sp---dg~~la~~~~~~~~~~~~~~~~i~~~~~~~---~~--~----~~~~~~l~~~~~~~~~~~~SpDg~~l~ 526 (721)
+..++.+| ||++|+|... ....+|.+.+.- .. . ....+.+..........+.+++|. |+
T Consensus 130 ~~gial~~~~~d~r~LYf~~l--------ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly 200 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPL--------SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LY 200 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEET--------T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EE
T ss_pred ccccccCCCCCCccEEEEEeC--------CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EE
Confidence 44555544 8899999863 345677776431 10 0 012233322222445578888775 55
Q ss_pred EEEeeCCceeEEEEECCCCcc-cceEECcCCC---cCceeeEEcc--CCCEEEEEEcc
Q 004971 527 FRSTRTGYKNLYIMDAEGGEG-YGLHRLTEGP---WSDTMCNWSP--DGEWIAFASDR 578 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~~~---~~~~~~~~Sp--DG~~l~~~~~~ 578 (721)
|..-. ...|++|+..+.-. .....+.... .....+.+.+ +|. |++.+++
T Consensus 201 ~~~~~--~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~snr 255 (287)
T PF03022_consen 201 FTDVE--QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLSNR 255 (287)
T ss_dssp EEECC--CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE-S
T ss_pred EecCC--CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEECc
Confidence 55432 67899999986211 0133333222 2345677777 554 5555544
No 392
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=87.55 E-value=29 Score=39.14 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=108.5
Q ss_pred CcCCCEEEEEeCCcEEEEECCCCceEE------Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 427 SPKGDRIAFVEFPGVYVVNSDGSNRRQ------VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 427 SpDG~~la~~~~~~l~v~d~~~g~~~~------l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
++-|..|.|+....|....+++.+.+. |. ...+..++|.=-.+.++++-. ..-.|-+..+.+.
T Consensus 987 ~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv--------~g~SI~rasL~G~- 1057 (1289)
T KOG1214|consen 987 PSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDV--------AGRSISRASLEGA- 1057 (1289)
T ss_pred CCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeec--------CCCccccccccCC-
Confidence 455888999988889988887655322 22 234455666655666666532 1112222233332
Q ss_pred CccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEE
Q 004971 499 GVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 499 ~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~ 576 (721)
+.+.+...+ .....+++.--++.++++... ..+|-+..+++.+. +.|. .+-.....+...|=+..|+++.
T Consensus 1058 ---Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~--lD~IevA~LdG~~r---kvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1058 ---EPETIVNSGLISPEGIAVDHIRRNMYWTDSV--LDKIEVALLDGSER---KVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred ---CCceeecccCCCccceeeeeccceeeeeccc--cchhheeecCCcee---eEEEeecccCcceEEeecccCceeecc
Confidence 333333322 333445555556777777543 23455555554442 2222 2323345678888899999998
Q ss_pred ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
... ....|-..++++...+.+... .-+..+.+.|.|..+.|-|.....
T Consensus 1130 WnR----enPkIets~mDG~NrRilin~-DigLPNGLtfdpfs~~LCWvDAGt 1177 (1289)
T KOG1214|consen 1130 WNR----ENPKIETSSMDGENRRILINT-DIGLPNGLTFDPFSKLLCWVDAGT 1177 (1289)
T ss_pred ccc----cCCcceeeccCCccceEEeec-ccCCCCCceeCcccceeeEEecCC
Confidence 764 345788889888766666553 445667899999999998876544
No 393
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=87.48 E-value=7.6 Score=38.25 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECC--CCceE--EEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSD--GSNRR--QVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~--~g~~~--~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~ 490 (721)
..+.+..|-+.+....+-.|-+|+++ .+... .+. ...+.+..|+|....+++.+ ...++++|.
T Consensus 176 NSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS------sSkG~Ikl~ 249 (460)
T COG5170 176 NSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS------SSKGEIKLN 249 (460)
T ss_pred eeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe------cCCCcEEeh
Confidence 34566677776666666667777764 22221 222 23466788999877666554 356788887
Q ss_pred EEEccCC-CCccceEEcccC----------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---
Q 004971 491 SINVDDV-DGVSAVRRLTTN----------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--- 556 (721)
Q Consensus 491 ~~~~~~~-~~~~~~~~l~~~----------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--- 556 (721)
++....- +.......++.. -..+..+.||++|++|+..+ ...+.+||+.-.+ ..++.+.-+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd----yltvkiwDvnm~k-~pikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD----YLTVKIWDVNMAK-NPIKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec----cceEEEEeccccc-CCceeechHHHH
Confidence 7763211 000011111111 12456689999999998776 5788899886433 124444211
Q ss_pred ------------CcCceeeEEccCCCEEEEEEcc
Q 004971 557 ------------PWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 557 ------------~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
.+.-..+.||-|.+.++.++..
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 1122457899999988877765
No 394
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.85 E-value=30 Score=34.99 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=77.0
Q ss_pred EEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 432 RIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 432 ~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
..||. +...|.++|+.+++..++... .++++....-+...+ ....+..
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~-----~~~~~p~~~~~~i~g------------------------~~~~~~d 128 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHN-----SFSPDPDAGPFTIGG------------------------ESFQWPD 128 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETC-----GCTTS-SSEEEEETT------------------------EEEEETT
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecC-----CcceeccccceeccC------------------------ceEecCC
Confidence 45555 246899999999998777622 222332222222110 1111111
Q ss_pred CCCCCcceEEc---cCCCEEEEEEeeCCceeEEEEECC---CCcc-------cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971 509 NGKNNAFPSVS---PDGKWIVFRSTRTGYKNLYIMDAE---GGEG-------YGLHRLTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 509 ~~~~~~~~~~S---pDg~~l~~~s~~~g~~~l~~~d~~---~g~~-------~~~~~l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
.....+.+ +||++|+|..-. ..++|.++.+ .... ..++.+..........+.+++|. |+|+
T Consensus 129 ---g~~gial~~~~~d~r~LYf~~ls--s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~ 202 (287)
T PF03022_consen 129 ---GIFGIALSPISPDGRWLYFHPLS--SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFT 202 (287)
T ss_dssp ---SEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEE
T ss_pred ---CccccccCCCCCCccEEEEEeCC--CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEe
Confidence 13344554 599999998752 3468877632 1111 01223322112235678888775 6666
Q ss_pred EccCCCCCCceeEEEEecCC----CceEEeeecCC-CCCcCCeEECC--CCCEEEEEEec
Q 004971 576 SDRDNPGSGSFEMYLIHPNG----TGLRKLIQSGS-AGRANHPYFSP--DGKSIVFTSDY 628 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~----~~~~~l~~~~~-~~~~~~~~~Sp--DG~~l~~~~~~ 628 (721)
.-.. ..|+.|+..+ .....+..... -.....+.+.+ +|. |++.+++
T Consensus 203 ~~~~------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~snr 255 (287)
T PF03022_consen 203 DVEQ------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLSNR 255 (287)
T ss_dssp ECCC------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE-S
T ss_pred cCCC------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEECc
Confidence 6543 3899999887 23444443211 12445677877 555 4444543
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.80 E-value=57 Score=36.31 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=29.1
Q ss_pred eeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
..|..+|+.+|+. .--..... ....+ ..-.|. |+|... ++ .++.+|..+|+..-
T Consensus 441 g~l~AiD~~tGk~---~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G-------~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKI---VWEHKEDFPLWGGV-LATAGD-LVFYGTLEG-------YFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCce---eeEecCCCCCCCcc-eEECCc-EEEEECCCC-------eEEEEECCCCCEeE
Confidence 3588888888873 22211111 11122 122444 444443 33 79999999997543
No 396
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.58 E-value=3.7 Score=45.22 Aligned_cols=158 Identities=12% Similarity=0.137 Sum_probs=92.2
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCC--ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGS--NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g--~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
....++|-|+-++.++...+++.|++.. .++.|. +-.+.+..|||...+=+.+.. ....+..+|.+....
T Consensus 28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-----ts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-----TSNQKAIIWNLAKSS 102 (1081)
T ss_pred cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-----cCcchhhhhhhhcCC
Confidence 3467889999999998899999999743 234433 556678889887654433321 234556667665544
Q ss_pred CCCccceE--EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc-CCCEE
Q 004971 497 VDGVSAVR--RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP-DGEWI 572 (721)
Q Consensus 497 ~~~~~~~~--~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp-DG~~l 572 (721)
. ... .+-.+...+....|.|...-+.....- +..+..||..+-.. ....+ ........+.|+- |+..|
T Consensus 103 ~----~aIef~lhghsraitd~n~~~q~pdVlatcsv--dt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 103 S----NAIEFVLHGHSRAITDINFNPQHPDVLATCSV--DTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred c----cceEEEEecCccceeccccCCCCCcceeeccc--cccceeeeccCCCc--ceeeeecccccCceeeecccCcchh
Confidence 3 222 233344556667788776655544332 45677788775442 22222 1122335677864 34433
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
+ .+.. ..|++||...|....
T Consensus 175 a-sshg-------~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 175 A-SSHG-------NDIFVWDLRKGSTPL 194 (1081)
T ss_pred h-hccC-------CceEEEeccCCCcce
Confidence 3 3322 379999987665333
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.56 E-value=16 Score=38.30 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=71.8
Q ss_pred CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
+.+.+..||+|.+-|++... +..+-.++....+........ .+...+..+.|+. ...||+..+.+ ..+
T Consensus 67 G~I~SIkFSlDnkilAVQR~---~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s~e~A~i~~~G------~e~ 136 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRT---SKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-STEIAFITDQG------IEF 136 (657)
T ss_pred CceeEEEeccCcceEEEEec---CceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-CeeEEEEecCC------eEE
Confidence 46778999999999998876 566777776544421111111 1233456788984 48899998764 578
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
|..+......+.+.. +.-.+....|.++-+.+..++.
T Consensus 137 y~v~pekrslRlVks--~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKS--HNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEchhhhhhhhhhh--cccCccEEEEccccceEeeecc
Confidence 888876655554432 5667888999999888777665
No 398
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=85.70 E-value=8.7 Score=40.36 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=109.8
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
+..+.|...|..|+..+ +..+.+||-..+..+.-+ ...+++..|-| +.+.|+..+ .++.+++-.+.
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-------~dgqvr~s~i~ 217 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-------RDGQVRVSEIL 217 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-------ccCceeeeeec
Confidence 45567888898888874 678899998777654433 22445555555 445555544 56777777666
Q ss_pred ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--C--cCceeeEEccCC
Q 004971 494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--P--WSDTMCNWSPDG 569 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~--~~~~~~~~SpDG 569 (721)
..+. ....+++..+.+.+..++.-|+..+-++.+.. +..+.-+|+..+.+......-.. . .....++..|-.
T Consensus 218 ~t~~--~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 218 ETGY--VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred cccc--eecceecccccCccceeeecCCCCCccccccc--ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 5442 12356777777888888999988877666543 55677778877654211111111 1 123456666765
Q ss_pred C-EEEEEEccCCCCCCceeEEEEecCCCc------------eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 570 E-WIAFASDRDNPGSGSFEMYLIHPNGTG------------LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 570 ~-~l~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
. .+++...+. .+.+||...-. +..+.. .....+..++||.+|.-|..+.++.
T Consensus 294 t~~faVgG~dq-------f~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 294 TNEFAVGGSDQ-------FARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred ccccccCChhh-------hhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeeccc
Confidence 5 445444442 34444432110 111111 1234567889998887776655554
No 399
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=15 Score=41.24 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=56.7
Q ss_pred ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC-----CCEEEEEEccCCCCCCceeEEEEec
Q 004971 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-----GEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.-+|++++..++ ++.+.+..+.+.+. ..+..- ...+..++++|| .++++.++.. .|+++.-
T Consensus 80 ~~~Gey~asCS~---DGkv~I~sl~~~~~--~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~a--------glvL~er 145 (846)
T KOG2066|consen 80 ILEGEYVASCSD---DGKVVIGSLFTDDE--ITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMA--------GLVLSER 145 (846)
T ss_pred ccCCceEEEecC---CCcEEEeeccCCcc--ceeEec-CCcceeEEeccchhhhhhhheeecCcc--------eEEEehh
Confidence 457888888887 67777777766653 222322 223467888888 4455544433 2555432
Q ss_pred --CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 594 --NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 594 --~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
-+.+...+... ..|.+..+.|- |.+|+|+++.+
T Consensus 146 ~wlgnk~~v~l~~-~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 146 NWLGNKDSVVLSE-GEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred hhhcCccceeeec-CccceEEEEec--CcEEEEecCCC
Confidence 22222222332 56778888885 77999988776
No 400
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=59 Score=36.05 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=27.8
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~ 363 (721)
....+.++|.|+.+|+|+... .+|+.++.+++.+.++
T Consensus 201 ~~~dP~lcP~~~~fia~i~~~------dl~V~n~~~~~ekrlt 237 (867)
T KOG2281|consen 201 TRMDPKLCPADPDFIAYIKVC------DLWVLNILTGEEKRLT 237 (867)
T ss_pred CccCcccCCCCccceeeeehh------hhhhhhhhhchhhcee
Confidence 446788888669999997644 2888888888776664
No 401
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.15 E-value=32 Score=33.59 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=76.5
Q ss_pred ceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC----Ccc-cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971 502 AVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG----GEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 502 ~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~----g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
+.+.+.... .....-++-|||+.|.+....+|...+.+++..+ ... .....+....+. ....--|||+.|+++
T Consensus 57 ~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~DG~vlIvG 135 (243)
T PF07250_consen 57 TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLPDGRVLIVG 135 (243)
T ss_pred cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECCCCCEEEEe
Confidence 444444322 3445567889999998888777777888888754 110 001123333333 344556899988888
Q ss_pred EccCCCCCCceeEEEEecCC--CceEEe--eec----CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCcc
Q 004971 576 SDRDNPGSGSFEMYLIHPNG--TGLRKL--IQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~--~~~~~l--~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (721)
.... . ..-.++... .....+ ... .....+-.+...|||+.++++..+.
T Consensus 136 G~~~----~--t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s------------------ 191 (243)
T PF07250_consen 136 GSNN----P--TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS------------------ 191 (243)
T ss_pred CcCC----C--cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc------------------
Confidence 7763 1 222333311 112222 110 0112233567899999888766532
Q ss_pred EEEEEcCCCCe-EEeccCC
Q 004971 648 IFKIKLDGSDL-KRLTQNS 665 (721)
Q Consensus 648 l~~~d~~~~~~-~~lt~~~ 665 (721)
.++|.++.++ +.+..-.
T Consensus 192 -~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 192 -IIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred -EEEeCCCCeEEeeCCCCC
Confidence 3458777765 6776533
No 402
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=84.92 E-value=68 Score=35.52 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=55.2
Q ss_pred ceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEE--EEEEcc---CCCCCCceeEEEEecCCCceEEeeecC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWI--AFASDR---DNPGSGSFEMYLIHPNGTGLRKLIQSG 605 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l--~~~~~~---~~~~~~~~~i~~~d~~~~~~~~l~~~~ 605 (721)
...|+.+++++++ ++-...+ ..-....+.+.-+..| |.+... .........||++|-+-...-++...+
T Consensus 247 ~T~I~kf~~~~~~---~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la 323 (521)
T PF09826_consen 247 STTIYKFALDGGK---IEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLA 323 (521)
T ss_pred ceEEEEEEccCCc---EEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccC
Confidence 3578999998877 3322211 1112334444433333 333321 111235678999983333333443333
Q ss_pred CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 606 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.+..+.++.|--| +.++...+...| ||++|+...
T Consensus 324 ~gE~IysvRF~Gd--~~Y~VTFrqvDP---------------LfviDLsdP 357 (521)
T PF09826_consen 324 PGERIYSVRFMGD--RAYLVTFRQVDP---------------LFVIDLSDP 357 (521)
T ss_pred CCceEEEEEEeCC--eEEEEEEeecCc---------------eEEEECCCC
Confidence 4556778888654 555555555444 999999774
No 403
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=84.81 E-value=26 Score=34.60 Aligned_cols=139 Identities=11% Similarity=0.030 Sum_probs=76.5
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
...+.|++-|..+++.- .++.+.+......- ..+.+.+..++.......|+-..--|+|.... +..|.
T Consensus 124 ~lslD~~~~~~~i~vs~-------s~G~~~~v~~t~~~---le~vq~wk~He~E~Wta~f~~~~pnlvytGgD--D~~l~ 191 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSD-------SRGSISGVYETEMV---LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD--DGSLS 191 (339)
T ss_pred eeEEEeeccCceEEEEc-------CCCcEEEEecceee---eeecccccccceeeeeeecccCCCceEEecCC--CceEE
Confidence 45678888888876653 34455432222110 01222344455444555666555556666543 67899
Q ss_pred EEECCCCcccceEE-CcCCCcCceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEE
Q 004971 539 IMDAEGGEGYGLHR-LTEGPWSDTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYF 615 (721)
Q Consensus 539 ~~d~~~g~~~~~~~-l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~ 615 (721)
.||+.-.... +.. ..-+...+..+.-| |++.+|+.++.++ .|.+||... +++ +......+.+..+.+
T Consensus 192 ~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-------~i~~~DtRnm~kP--l~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 192 CWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE-------CIRVLDTRNMGKP--LFKAKVGGGVWRIKH 261 (339)
T ss_pred EEEecCCcce-eeecceeeecceEEEecCCCCCceEEEecccc-------ceeeeehhcccCc--cccCccccceEEEEe
Confidence 9998722210 111 11223334444444 4677888888876 899999763 333 332224577888888
Q ss_pred CCCC
Q 004971 616 SPDG 619 (721)
Q Consensus 616 SpDG 619 (721)
+|--
T Consensus 262 ~p~~ 265 (339)
T KOG0280|consen 262 HPEI 265 (339)
T ss_pred cchh
Confidence 8853
No 404
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.64 E-value=5.7 Score=43.14 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=55.4
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC-cceEEccCCCEEEEEEeeCCce
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN-AFPSVSPDGKWIVFRSTRTGYK 535 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~SpDg~~l~~~s~~~g~~ 535 (721)
..+..+.|+|--..+|+.. .++++-|++++-. .+-.+...+..+ ..++|-|||+.|++.-. ++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t-------~~gelli~R~n~q------Rlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT-------EKGELLIHRLNWQ------RLWTIPIPGENVTASLCWRPDGKLLAVGFK---DG 84 (665)
T ss_pred cceEEEEEcCccchhheec-------cCCcEEEEEeccc------eeEeccCCCCccceeeeecCCCCEEEEEec---CC
Confidence 3456778999888888875 5677777777632 344444333333 48999999999999987 78
Q ss_pred eEEEEECCCCcc
Q 004971 536 NLYIMDAEGGEG 547 (721)
Q Consensus 536 ~l~~~d~~~g~~ 547 (721)
.|.+.|+.+|..
T Consensus 85 ~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 85 TIRLHDVEKGGR 96 (665)
T ss_pred eEEEEEccCCCc
Confidence 999999998874
No 405
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.93 E-value=4.1 Score=45.60 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCcceEEccCCCEEEEEEeeC---CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
.....+|+|-.-.+++++-.. |.-.|| .++|++ -+.++ .+....++.|.|.. .+++..... + .+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIf---adtGEP--qr~Vt-~P~hatSLCWHpe~-~vLa~gwe~----g--~~ 83 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIF---ADTGEP--QRDVT-YPVHATSLCWHPEE-FVLAQGWEM----G--VS 83 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEE---ecCCCC--Ccccc-cceehhhhccChHH-HHHhhcccc----c--ee
Confidence 344568999888888876532 333444 467774 33333 33445679999974 344444432 2 56
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
-+|...+.+...+... +...+..+.||+||..|+...+.+
T Consensus 84 ~v~~~~~~e~htv~~t-h~a~i~~l~wS~~G~~l~t~d~~g 123 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVVET-HPAPIQGLDWSHDGTVLMTLDNPG 123 (1416)
T ss_pred EEEecCCceeeeeccC-CCCCceeEEecCCCCeEEEcCCCc
Confidence 6666655554444332 677788899999999988766554
No 406
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=6.7 Score=42.61 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
.+....|+|--..||+... .++|.+..++-.+ +..++.+...+ ..++|-|||+.|+++-.++ .|.+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~---~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG-------~I~L 88 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTE---KGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDG-------TIRL 88 (665)
T ss_pred ceEEEEEcCccchhheecc---CCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCC-------eEEE
Confidence 4455778888777777765 4445444444223 45555222223 4899999999999999886 8999
Q ss_pred EecCCCce
Q 004971 591 IHPNGTGL 598 (721)
Q Consensus 591 ~d~~~~~~ 598 (721)
.|+.++..
T Consensus 89 ~Dve~~~~ 96 (665)
T KOG4640|consen 89 HDVEKGGR 96 (665)
T ss_pred EEccCCCc
Confidence 99988753
No 407
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.69 E-value=13 Score=38.95 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=70.0
Q ss_pred ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeC
Q 004971 456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
.+.+.++.||+|.+.||+.. .+..+.++....+.. ....... ....+..+.|+.. +-+++.++.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR-------~~~~v~f~nf~~d~~----~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~- 132 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQR-------TSKTVDFCNFIPDNS----QLEYTQECKTKNANILGFCWTSS-TEIAFITDQ- 132 (657)
T ss_pred CCceeEEEeccCcceEEEEe-------cCceEEEEecCCCch----hhHHHHHhccCcceeEEEEEecC-eeEEEEecC-
Confidence 56788999999999999975 456777766633321 1111111 1234667888755 788888763
Q ss_pred CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
..++|..+..... ++-+......+....|.++-+.++.+..
T Consensus 133 -G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 133 -GIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred -CeEEEEEchhhhh---hhhhhhcccCccEEEEccccceEeeecc
Confidence 4578888877555 4444455556678899999887776665
No 408
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.58 E-value=12 Score=41.49 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=84.3
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-e---cccCCCCceeCcCCC---EEEEEeCCcEEEE
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-L---FRFDGSFPSFSPKGD---RIAFVEFPGVYVV 444 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~~~~~~~~~~SpDG~---~la~~~~~~l~v~ 444 (721)
.....++|-|+-|+.++..+ +++.++..+-.... + .+..+....|||... +++..+...-.+|
T Consensus 27 ~~a~si~p~grdi~lAsr~g----------l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQG----------LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred ccceeeccccchhhhhhhcC----------eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence 44567788888887765433 56666654422211 1 112234457776553 3444455666677
Q ss_pred ECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE
Q 004971 445 NSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518 (721)
Q Consensus 445 d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 518 (721)
+++-..-+.|. ...+..+.|.|...-+..+. .-+..++.|++..... ..-....-......+.|
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc------svdt~vh~wd~rSp~~----p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC------SVDTYVHAWDMRSPHR----PFYSTSSWRSAASQVKW 166 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeec------cccccceeeeccCCCc----ceeeeecccccCceeee
Confidence 77543322222 34677888888776665554 2467788888765431 11111111123455677
Q ss_pred ccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
+--.-.+...+. ...|++||...|.
T Consensus 167 nyk~p~vlassh---g~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 167 NYKDPNVLASSH---GNDIFVWDLRKGS 191 (1081)
T ss_pred cccCcchhhhcc---CCceEEEeccCCC
Confidence 754444444444 5789999998765
No 409
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=81.49 E-value=30 Score=31.77 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=62.5
Q ss_pred ccCCCEEEEEEeeC------CceeEEEEECCCCcccceEECc--CC--CcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 519 SPDGKWIVFRSTRT------GYKNLYIMDAEGGEGYGLHRLT--EG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 519 SpDg~~l~~~s~~~------g~~~l~~~d~~~g~~~~~~~l~--~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
|-+|++=|+.-..+ +-..||+.|+.+++. ..|. .. ....-.+.|--|...++..+...+..+.+..|
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~---~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnL 142 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNW---WSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNL 142 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCCCce---EEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeE
Confidence 34577766664432 456899999998883 3332 21 23334677887766666555443333455689
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
|++++.+++...++.. .......+.+--+|..|.+
T Consensus 143 y~~nl~tg~~~~ly~~-~dkkqQVis~e~~gd~L~L 177 (200)
T PF15525_consen 143 YKYNLNTGNLTELYEW-KDKKQQVISAEKNGDNLNL 177 (200)
T ss_pred EEEEccCCceeEeeec-cccceeEEEEEEeCCEEEE
Confidence 9999999999998863 2223334455555555543
No 410
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.06 E-value=57 Score=31.77 Aligned_cols=148 Identities=13% Similarity=-0.005 Sum_probs=82.8
Q ss_pred CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCcee-eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFS-TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~-~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
.+.+-+|.+.++|.+ ...+.-+|..+|+...-. ...+.. +-. -|.+++... .+..+|-++.+++
T Consensus 15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GC---------y~g~lYfl~~~tG 83 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGC---------YSGGLYFLCVKTG 83 (354)
T ss_pred cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEE---------ccCcEEEEEecch
Confidence 356667777777773 445666788888754322 222211 111 455666665 2233444444432
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.+.......+..-..+...+|+..|+..+. +.++|.+|..+... +-...-+......|...|--..|+++..
T Consensus 84 ---s~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~c--VykskcgG~~f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 84 ---SQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred ---hheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccce--EEecccCCceeccceecCCCceEEEEec
Confidence 123333333323345678899999999988 78999999987653 4333333333356788883334666665
Q ss_pred cCCCCCCceeEEEEecCCC
Q 004971 578 RDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~ 596 (721)
.+ .+.....+..
T Consensus 156 ~G-------~vlavt~~~~ 167 (354)
T KOG4649|consen 156 AG-------AVLAVTKNPY 167 (354)
T ss_pred cc-------eEEEEccCCC
Confidence 43 4555554444
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.92 E-value=60 Score=32.01 Aligned_cols=145 Identities=10% Similarity=0.118 Sum_probs=78.6
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~ 562 (721)
..++..|..++..++ +...-..-+.....--...-+.+|+....+ ....+++|.++-+. +.++... ..-..
T Consensus 64 ~yG~S~l~~~d~~tg----~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--~~~~f~yd~~tl~~--~~~~~y~-~EGWG 134 (264)
T PF05096_consen 64 LYGQSSLRKVDLETG----KVLQSVPLPPRYFGEGITILGDKLYQLTWK--EGTGFVYDPNTLKK--IGTFPYP-GEGWG 134 (264)
T ss_dssp STTEEEEEEEETTTS----SEEEEEE-TTT--EEEEEEETTEEEEEESS--SSEEEEEETTTTEE--EEEEE-S-SS--E
T ss_pred CCCcEEEEEEECCCC----cEEEEEECCccccceeEEEECCEEEEEEec--CCeEEEEccccceE--EEEEecC-CcceE
Confidence 467888888888775 433222222222222222225678888776 55789999987654 4444322 11144
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCC---CcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAG---RANHPYFSPDGKSIVFTSDYGGISAEPIST 638 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~ 638 (721)
++ .||+.|+.+.... .|+.+|..+-+..+-.... ... ..+.+.|- +|. | |+.--..
T Consensus 135 Lt--~dg~~Li~SDGS~-------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-I-yANVW~t-------- 194 (264)
T PF05096_consen 135 LT--SDGKRLIMSDGSS-------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-I-YANVWQT-------- 194 (264)
T ss_dssp EE--ECSSCEEEE-SSS-------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-E-EEEETTS--------
T ss_pred EE--cCCCEEEEECCcc-------ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-E-EEEeCCC--------
Confidence 55 6888888777654 8999998876544322211 111 22345564 554 3 3343332
Q ss_pred CCCCCCCccEEEEEcCCCCeEEecc
Q 004971 639 PHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
..|.++|+++|++...-+
T Consensus 195 -------d~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 195 -------DRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -------SEEEEEETTT-BEEEEEE
T ss_pred -------CeEEEEeCCCCeEEEEEE
Confidence 259999999998876543
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.64 E-value=18 Score=38.40 Aligned_cols=153 Identities=11% Similarity=0.151 Sum_probs=80.5
Q ss_pred eeCcCCCEEEEE---eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 425 SFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 425 ~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
-.+.+.+.|+|. ....||.+|+.-|+...-- .....-+.|.|+-+.--++..+.. ..-....|++++..-.+
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl--vGlS~~svFrIDPR~~g-- 548 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL--VGLSDYSVFRIDPRARG-- 548 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE--EeecccceEEecccccC--
Confidence 444445566666 3567999999888753322 111124455554332111110000 00123345666543220
Q ss_pred cceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 501 SAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 501 ~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.++....... ....+..-.-.+-+|+.++. .++|.++|--+... -..|+.-...+..+..+.+|++|+.+..
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~---kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR---KGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecC---CCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeec
Confidence 1222222211 12222333344568888887 67899988765442 2334443445678889999999988876
Q ss_pred cCCCCCCceeEEEEecC
Q 004971 578 RDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~ 594 (721)
. .|.+.|+.
T Consensus 624 ~--------yllL~d~~ 632 (776)
T COG5167 624 N--------YLLLTDVP 632 (776)
T ss_pred c--------eEEEEecc
Confidence 5 67777764
No 413
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.77 E-value=11 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
|||++|+++.... ..|.++|..+++...-..
T Consensus 1 pd~~~lyv~~~~~------~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGS------NTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCC------CEEEEEECCCCeEEEEEE
Confidence 7899888777543 389999998876554443
No 414
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=79.46 E-value=1.5e+02 Score=35.81 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=30.5
Q ss_pred CceeCcCCCEEEEEeCCcEEEEECCCCce----------EEE-----------eecCceeeEEcCCCCeEEEEe
Q 004971 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNR----------RQV-----------YFKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 423 ~~~~SpDG~~la~~~~~~l~v~d~~~g~~----------~~l-----------~~~~~~~~~~spdg~~la~~~ 475 (721)
.++++.+| .|+|+....|.++|-.+--. +.+ .-...++++.+|-...|++.-
T Consensus 479 GIa~dk~g-~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld 551 (1899)
T KOG4659|consen 479 GIAFDKMG-NLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD 551 (1899)
T ss_pred ceeEccCC-cEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee
Confidence 35666666 46677666677776543110 011 124567888899777777653
No 415
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.79 E-value=7.8 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=19.6
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
|||++|+.+....+ .|.++|+.+++..
T Consensus 1 pd~~~lyv~~~~~~----------------~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSN----------------TVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCC----------------EEEEEECCCCeEE
Confidence 68998887665443 4999999777654
No 416
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.90 E-value=71 Score=31.86 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=48.4
Q ss_pred ceeEEEEECCCCcccceEECc--------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 534 YKNLYIMDAEGGEGYGLHRLT--------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
..+|..+|.++++ ++-|- ...+.++.+.+.|-...|+++..++ ...-.||..|..+|+.++|..
T Consensus 77 YSHVH~yd~e~~~---VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 77 YSHVHEYDTENDS---VRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred cceEEEEEcCCCe---EEEEEecccCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccC
Confidence 7899999998887 33332 1234578899999999999999885 344567888888999888864
No 417
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=77.90 E-value=39 Score=31.09 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred ccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEeeecCC--CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 566 SPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
|.+|++=|+....+.. .-+-..||++|..++....|..... ....-.+.|--|-..++..+...+.
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GT---------- 135 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGT---------- 135 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccce----------
Confidence 4567777776655332 2245689999999988776643211 1233467787776666665543321
Q ss_pred CCCCccEEEEEcCCCCeEEeccC
Q 004971 642 YQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
..--++||++++.+++...|+..
T Consensus 136 vS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 136 VSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred EccCCeEEEEEccCCceeEeeec
Confidence 12235799999999999999973
No 418
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=77.56 E-value=1.2e+02 Score=33.69 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=48.4
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
.+| |-++|+|.....+.+...+ +.++...+... ......+...+|-. ||..|.+...+..... .++|..
T Consensus 145 ~sp-D~~~ia~~~~~~~~e~~~~-v~~~~~~~~~~----~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~----hkvy~h 214 (712)
T KOG2237|consen 145 SSP-DHKYIAYTKDTEGKELFTV-VIDVKFSGPVW----THDGKGVSYLAWAKQDGEDLLYGTEDENNRP----HKVYYH 214 (712)
T ss_pred cCC-CceEEEEEEcCCCCcccee-eeeeccCCcee----eccCCceEeeeecccCCceeeeeeeccccCc----ceEEEE
Confidence 678 9999999877776666666 66776665322 12244556677777 8887777766655331 467777
Q ss_pred eccCC
Q 004971 406 NIKSP 410 (721)
Q Consensus 406 ~~~~~ 410 (721)
.+.+.
T Consensus 215 ~~Gtd 219 (712)
T KOG2237|consen 215 TLGTD 219 (712)
T ss_pred ecccC
Confidence 77654
No 419
>PHA03098 kelch-like protein; Provisional
Probab=77.29 E-value=1e+02 Score=34.38 Aligned_cols=132 Identities=10% Similarity=-0.030 Sum_probs=62.6
Q ss_pred ccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 519 SPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 519 SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.-+|+.+++..... ....+++||..+++-.....+..... ...+..-+|+..++++.... ......+++||+.++
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~--~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY--NPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTN 416 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc--cceEEEECCEEEEECCcCCC-CcccceEEEEeCCCC
Confidence 34555444443221 12468889988776322222222111 11222335554444432211 012357999999887
Q ss_pred ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+-..+... ........+..-+++ |++.+...... .......+++||+.+.+.+.+..
T Consensus 417 ~W~~~~~~-p~~r~~~~~~~~~~~-iyv~GG~~~~~--------~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 417 KWSKGSPL-PISHYGGCAIYHDGK-IYVIGGISYID--------NIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred eeeecCCC-CccccCceEEEECCE-EEEECCccCCC--------CCcccceEEEecCCCCceeeCCC
Confidence 76655432 112222233334554 44443322110 00112359999999988887754
No 420
>PLN02193 nitrile-specifier protein
Probab=77.06 E-value=1.2e+02 Score=33.24 Aligned_cols=121 Identities=10% Similarity=0.027 Sum_probs=60.2
Q ss_pred eeEEEEECCCCcccceEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCC
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAG 608 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~ 608 (721)
..++.+|+.+.+ -..+... .......+..-+++.+++..... .....+++||+.+.+-.++...+ ...
T Consensus 294 ~~~~~yd~~t~~---W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g---~~~~dv~~yD~~t~~W~~~~~~g~~P~~ 367 (470)
T PLN02193 294 KTLDSYNIVDKK---WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG---CEVDDVHYYDPVQDKWTQVETFGVRPSE 367 (470)
T ss_pred ceEEEEECCCCE---EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC---CccCceEEEECCCCEEEEeccCCCCCCC
Confidence 468889988776 3333211 01111222233666555544332 12357999999998776664321 111
Q ss_pred CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 609 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
.....+..-+++.+++....... +......-....++|++|+.+.+...+...
T Consensus 368 R~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 368 RSVFASAAVGKHIVIFGGEIAMD---PLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred cceeEEEEECCEEEEECCccCCc---cccccCccceeccEEEEEcCcCEEEEcccC
Confidence 12222333355555554432210 000000001124699999999988888753
No 421
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.46 E-value=1e+02 Score=32.07 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=82.0
Q ss_pred CCCceeCcCCCEEEE-E-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAF-V-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~-~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+.+++||..+-|+. . -...|.++|+.+.....-. ...+.+..|.-|....+|+.. .++.+.||++....
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYDMRQPE 269 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEEccCCC
Confidence 345789998874443 3 4778999999887644333 456778999999998888873 56788888887655
Q ss_pred CCCccceEEcc----cCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971 497 VDGVSAVRRLT----TNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568 (721)
Q Consensus 497 ~~~~~~~~~l~----~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD 568 (721)
+ ....+. ..+ .....-..++-|..|++... ....|-+-.+.+....+.++ +.++...+.+..+-
T Consensus 270 ~----~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt---~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~ 341 (463)
T KOG1645|consen 270 G----PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT---VLQFYEIVFSAECLPCVLEL-EPPGICISMQYHGV 341 (463)
T ss_pred c----hHhhhhhhhccCcceeecccCccccccccceEEeeeh---hhhhhhhhccccCCCccccc-CCCcceeeeeecCc
Confidence 3 221111 111 00111134456777777765 33444433333332111112 22333345556665
Q ss_pred CCEEEEEEcc
Q 004971 569 GEWIAFASDR 578 (721)
Q Consensus 569 G~~l~~~~~~ 578 (721)
.++++.+...
T Consensus 342 snh~l~tyRs 351 (463)
T KOG1645|consen 342 SNHLLLTYRS 351 (463)
T ss_pred cceEEEEecC
Confidence 6777776654
No 422
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=75.92 E-value=62 Score=35.84 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=26.2
Q ss_pred EEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEe
Q 004971 441 VYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 441 l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~ 475 (721)
+...+...++.+++. ...+..+.|+||++.|++..
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 556666777777766 34677899999999988754
No 423
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=75.62 E-value=1.1e+02 Score=33.62 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=62.6
Q ss_pred eeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC--CCcC
Q 004971 535 KNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA--GRAN 611 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~ 611 (721)
..|+.+|+.+.+...+..... ......+-+.. .|++|++-...........++|++|+.+.+-.++...+.. ....
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~-~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATV-VGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEE-ECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 389999999887422222222 11122233333 3455555444322212457899999998876655432211 1222
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+..-.-..+++++.....+. ....++|++|+.+.+.+++..
T Consensus 218 H~~~~~~~~~~v~gG~~~~~-----------~~l~D~~~ldl~~~~W~~~~~ 258 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGD-----------VYLNDVHILDLSTWEWKLLPT 258 (482)
T ss_pred ceEEEECCeEEEEeccccCC-----------ceecceEeeecccceeeeccc
Confidence 33333345666665554221 124579999999977775543
No 424
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.58 E-value=29 Score=37.18 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=69.3
Q ss_pred CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCC---
Q 004971 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGP--- 557 (721)
Q Consensus 485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~--- 557 (721)
..-.||.++...+ ..+..+..+. .+.-..+.||++.-=..+... .+..|++||+.-.....+.....+.
T Consensus 354 ~~~~l~klDIE~G---KIVeEWk~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 354 EQDKLYKLDIERG---KIVEEWKFED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CcCcceeeecccc---eeeeEeeccC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 3456777776654 1223333332 234445666655321111110 1578999997622210011111111
Q ss_pred -cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 558 -WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 558 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
......+-.-+| +|++++.++ .|.+||--+...+...+ +.+..+.++..+.||++|+.+..
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~G-------dIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKG-------DIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred ccccceeeecCCc-eEEEeecCC-------cEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEEecc
Confidence 111223334454 788888886 89999974444443433 35667889999999999976554
No 425
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=75.33 E-value=27 Score=29.03 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=36.4
Q ss_pred eEEccCCC-EEEEEEccCCC-------CCCceeEEEEecCCCceEEeeec---------CCCCCcCCeEECCCCCEEEEE
Q 004971 563 CNWSPDGE-WIAFASDRDNP-------GSGSFEMYLIHPNGTGLRKLIQS---------GSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 563 ~~~SpDG~-~l~~~~~~~~~-------~~~~~~i~~~d~~~~~~~~l~~~---------~~~~~~~~~~~SpDG~~l~~~ 625 (721)
+.+||... +.+|....+++ ...+..+.+.+...+....|-.. ...+....-.|||||++|-|+
T Consensus 6 vT~sP~~~~ryvFIHGpe~pd~~w~YdfhhRrGViv~~~~~~~a~~lDA~dit~Pyt~GALRGGtHvHvfSpDG~~lSFT 85 (122)
T PF12566_consen 6 VTVSPVEPPRYVFIHGPENPDAEWQYDFHHRRGVIVSDEQPGVAINLDAMDITPPYTPGALRGGTHVHVFSPDGSWLSFT 85 (122)
T ss_pred EEeCCCCCceEEEEeCCCCCCCCCccccccceeEEEecCCCCceeecchhcccCCCCCccccCCccceEECCCCCEEEEE
Confidence 45666655 56665544322 12334555555554444333211 012233445799999999998
Q ss_pred EecC
Q 004971 626 SDYG 629 (721)
Q Consensus 626 ~~~~ 629 (721)
-++.
T Consensus 86 YNDh 89 (122)
T PF12566_consen 86 YNDH 89 (122)
T ss_pred ecch
Confidence 8775
No 426
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=74.27 E-value=1e+02 Score=31.17 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=36.0
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEE
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~ 387 (721)
..+++.|. +| +|++.... .+.+..+|.++|+...+... .+...+++|. |+.+++.
T Consensus 204 mPhSPRWh--dg-rLwvldsg----tGev~~vD~~~G~~e~Va~v---pG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 204 MPHSPRWY--QG-KLWLLNSG----RGELGYVDPQAGKFQPVAFL---PGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred CCcCCcEe--CC-eEEEEECC----CCEEEEEcCCCCcEEEEEEC---CCCCccccee--CCEEEEE
Confidence 34677774 34 57665433 34588999988887777654 4566778887 7666553
No 427
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=74.02 E-value=38 Score=34.26 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=79.5
Q ss_pred ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCC-----c-eEEEe-ecCceeeEEcC-CCC
Q 004971 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGS-----N-RRQVY-FKNAFSTVWDP-VRE 469 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g-----~-~~~l~-~~~~~~~~~sp-dg~ 469 (721)
.++.+.++.++..+-.....++....|.-.+ -|++. ..+.|+.+|+..+ . ...+. +..+..+..-. +++
T Consensus 234 qqv~L~nvetg~~qsf~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 234 QQVLLTNVETGHQQSFQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ 312 (425)
T ss_pred ceeEEEEeecccccccccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc
Confidence 3456666666543333334445555665434 35565 4889999999654 1 34444 55556555554 566
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
+|.... .++++.+|+...-.-. ..+.+...|-. ....+...+....|+.+.+ +.-..+|.++.|..
T Consensus 313 ~LmaS~-------M~gkikLyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd---DcytRiWsl~~ghL 380 (425)
T KOG2695|consen 313 KLMASD-------MTGKIKLYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD---DCYTRIWSLDSGHL 380 (425)
T ss_pred eEeecc-------CcCceeEeeehhhhcc--cceeeeecccccccccccccccccceEEEccC---eeEEEEEecccCce
Confidence 666553 5789999998764310 01333333331 1122345555555555444 67888999998885
Q ss_pred cceEECc
Q 004971 548 YGLHRLT 554 (721)
Q Consensus 548 ~~~~~l~ 554 (721)
+..+.
T Consensus 381 --l~tip 385 (425)
T KOG2695|consen 381 --LCTIP 385 (425)
T ss_pred --eeccC
Confidence 44444
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.61 E-value=78 Score=33.67 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=69.9
Q ss_pred eeCcCCCEEEEEeCCcEEEEECCCCce-EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-
Q 004971 425 SFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG- 499 (721)
Q Consensus 425 ~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~- 499 (721)
..++||+.+++...+.+++-.-.++.. +.+. ...+..+.|.+||..+++...+ . ++.-..++...
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--------~--l~~S~d~G~~~~ 314 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--------G--LYVSKGTGLTEE 314 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc--------e--EEEecCCCCccc
Confidence 457888888888777777766555542 4443 4456788899999887766422 1 22222111000
Q ss_pred ccceEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEE
Q 004971 500 VSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 500 ~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~ 574 (721)
......+.. .......+.|.+|+.-+++.. ...+++ ..+.|+. -.... .-......+.|.++++.++.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~----~G~v~~-s~D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGG----SGILLR-STDGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEEC----CCcEEE-eCCCCcc--eeEccccCCCCcceeEEEEcCCCceEEE
Confidence 001111111 112355677887777554443 334444 4555553 22222 11223457788777765554
Q ss_pred EE
Q 004971 575 AS 576 (721)
Q Consensus 575 ~~ 576 (721)
+.
T Consensus 388 G~ 389 (398)
T PLN00033 388 GN 389 (398)
T ss_pred eC
Confidence 44
No 429
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=73.48 E-value=1e+02 Score=30.70 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=64.7
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCceE----------------EEe-ecCceeeE---EcCCCCeEEEEecCCCC
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR----------------QVY-FKNAFSTV---WDPVREAVVYTSGGPEF 480 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~----------------~l~-~~~~~~~~---~spdg~~la~~~~~~~~ 480 (721)
...+...++-+.++...++.|++++++.-... .+. ...+..++ -......|+++.
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~----- 112 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV----- 112 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-----
Confidence 34456667666777777889999987643221 111 12233333 223444555544
Q ss_pred CCCCCcEEEEEEEccCCCCc-cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 481 ASESSEVDIISINVDDVDGV-SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
..++.||.+..... .. ...+.+.-. .....++|. ++.|++.. ....+++|+.++..
T Consensus 113 ---kk~i~i~~~~~~~~-~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~----~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 113 ---KKKILIYEWNDPRN-SFSKLLKEISLP-DPPSSIAFL--GNKICVGT----SKGFYLIDLNTGSP 169 (275)
T ss_pred ---CCEEEEEEEECCcc-cccceeEEEEcC-CCcEEEEEe--CCEEEEEe----CCceEEEecCCCCc
Confidence 35888888876422 00 123333333 356677887 66788776 45788999998873
No 430
>PHA02713 hypothetical protein; Provisional
Probab=73.40 E-value=1.6e+02 Score=33.03 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=52.7
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCe
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~ 613 (721)
..+..||+.+.+-..+..+..... ...+..-+|+ |++.+...........+.+||..+ .+-..+............
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~--~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTI--RPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccc--cCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 468889998876322222222211 1122233554 555443211000123578999998 666655443211112222
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+. -+|+..++.+.++. ..+..||..+.+...+..
T Consensus 509 ~~-~~~~iyv~Gg~~~~---------------~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 509 IL-HDNTIMMLHCYESY---------------MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EE-ECCEEEEEeeecce---------------eehhhcCcccccccchhh
Confidence 22 25554444443331 136677887777766653
No 431
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=72.03 E-value=1.6e+02 Score=32.34 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=61.0
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEccC------CCCCCceeE
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRD------NPGSGSFEM 588 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~------~~~~~~~~i 588 (721)
+...+||..++... ..++.+|+.+.. .....+..+. .....+..-|+|..|+.+.... ....-.-.|
T Consensus 153 ~~~l~nG~ll~~~~-----~~~~e~D~~G~v-~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-----NRLYEIDLLGKV-IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVI 226 (477)
T ss_dssp EEE-TTS-EEEEEB-----TEEEEE-TT--E-EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EE
T ss_pred eeEcCCCCEEEecC-----CceEEEcCCCCE-EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEE
Confidence 56778998776444 679999998543 1122333321 1235688899999998887210 000122367
Q ss_pred EEEecCCCceEEeeecC-C----C---------------------CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCC
Q 004971 589 YLIHPNGTGLRKLIQSG-S----A---------------------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~-~----~---------------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 642 (721)
..+| .+|+........ + . -...++.+.+....|++++....
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s------------ 293 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQS------------ 293 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-------------
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcce------------
Confidence 7788 677665543211 0 0 01234677775555655554332
Q ss_pred CCCccEEEEEcCCCCeEEecc
Q 004971 643 QPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 643 ~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.|+.+|..++++.-+..
T Consensus 294 ----~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 294 ----AVIKIDYRTGKIKWILG 310 (477)
T ss_dssp ----EEEEEE-TTS-EEEEES
T ss_pred ----EEEEEECCCCcEEEEeC
Confidence 49999988888875554
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=70.20 E-value=1.3e+02 Score=30.58 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=61.1
Q ss_pred ceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
...++||+++++...+.+++---.+.. -+... ...+..+.|+||+...+.. + .+.+..-....+..
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~-------Gg~~~~s~~~~~~~-- 219 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R-------GGQIQFSDDPDDGE-- 219 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T-------TTEEEEEE-TTEEE--
T ss_pred EEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C-------CcEEEEccCCCCcc--
Confidence 466899998888888887754323332 22222 5677899999997655544 2 23333322111110
Q ss_pred ccce-EEcc---cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEE
Q 004971 500 VSAV-RRLT---TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 500 ~~~~-~~l~---~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l 572 (721)
.. +.+. ........++|.+++...+... ...|+ +..++|+. -++.. .-+.....+.|.++.+-+
T Consensus 220 --~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg----~G~l~-~S~DgGkt--W~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 220 --TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG----SGTLL-VSTDGGKT--WQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp --EE---B-TTSS--S-EEEEEESSSS-EEEEES----TT-EE-EESSTTSS---EE-GGGTTSSS---EEEEEETTEEE
T ss_pred --ccccccCCcccCceeeEEEEecCCCCEEEEeC----CccEE-EeCCCCcc--ceECccccCCCCceEEEEEcCCCceE
Confidence 11 1111 1223356679998866554332 34454 46666764 22222 112334667777665655
Q ss_pred EEEEc
Q 004971 573 AFASD 577 (721)
Q Consensus 573 ~~~~~ 577 (721)
++...
T Consensus 291 ~lG~~ 295 (302)
T PF14870_consen 291 VLGQD 295 (302)
T ss_dssp EE-ST
T ss_pred EECCC
Confidence 55443
No 433
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=69.78 E-value=13 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.9
Q ss_pred CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 559 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
.+..+.|+|....||++..++ +|+++.++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g-------~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDG-------EVLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEECCC-------eEEEEECCC
Confidence 356899999999999999885 788888754
No 434
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.23 E-value=1.1e+02 Score=29.83 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=73.6
Q ss_pred EEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc-cCCCCccce-EEcccCCCCCcc
Q 004971 441 VYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDVDGVSAV-RRLTTNGKNNAF 515 (721)
Q Consensus 441 l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~-~~l~~~~~~~~~ 515 (721)
-.+||+.+++.+.+. +-....-.+-+||+.|...... .....++++.-.. +......+. ..+.... ....
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~----~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN----DGNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WYPT 122 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC----ccccceEEEecCCCCCCCCceECcccccCCC-cccc
Confidence 456888888877766 3344556788999888765431 1234455555332 111000000 1122222 3334
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCC--cccceEECcC-----CCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGG--EGYGLHRLTE-----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g--~~~~~~~l~~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
...-|||+.|++..... ...-.++.... .......+.. ...-.-.+...|||+.++++..+ -
T Consensus 123 ~~~L~DG~vlIvGG~~~--~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---------s 191 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNN--PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---------S 191 (243)
T ss_pred ceECCCCCEEEEeCcCC--CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---------c
Confidence 56678999888876542 12223333211 1100111111 11112345678999988777754 3
Q ss_pred EEEecCCCce-EEee
Q 004971 589 YLIHPNGTGL-RKLI 602 (721)
Q Consensus 589 ~~~d~~~~~~-~~l~ 602 (721)
.++|..+++. +.+.
T Consensus 192 ~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 192 IIYDYKTNTVVRTLP 206 (243)
T ss_pred EEEeCCCCeEEeeCC
Confidence 4557777755 4443
No 435
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=62 Score=34.04 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=29.1
Q ss_pred CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
.....+.|||+|+.+...+. +..|++++..+|+.
T Consensus 202 t~pts~Efsp~g~qistl~~---DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNP---DRKVRGFVFKTGKL 235 (558)
T ss_pred cCccceEEccccCcccccCc---ccEEEEEEeccchh
Confidence 45667899999999998876 78999999999884
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.16 E-value=1.6e+02 Score=33.52 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=43.1
Q ss_pred cEEcCCCCEEEEEEeeCCCC-CCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceE
Q 004971 375 PFISPDSSRVGYHKCRGGST-REDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR 452 (721)
Q Consensus 375 ~~~Spdg~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~ 452 (721)
++..|-|.-|+......... .......|++.++.+.. ..+.......-.+.||.|...|.+..++.++++++.+....
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie 117 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE 117 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhc
Confidence 44445566666655442211 00011235555554431 12222222344579999988777778999999998775543
Q ss_pred E
Q 004971 453 Q 453 (721)
Q Consensus 453 ~ 453 (721)
.
T Consensus 118 ~ 118 (829)
T KOG2280|consen 118 S 118 (829)
T ss_pred c
Confidence 3
No 437
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=67.90 E-value=1.5e+02 Score=30.41 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCc-ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
+.+|+++. ...|+++++...+ ........ ....+..+ +.-+.+|+++.... .-.++.|+....+...
T Consensus 98 ~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl--~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 98 NGRLVVAV----GNKLYVYDLDNSKTLLKKAFYD-SPFYITSL--SVFKNYILVGDAMK-----SVSLLRYDEENNKLIL 165 (321)
T ss_dssp TTEEEEEE----TTEEEEEEEETTSSEEEEEEE--BSSSEEEE--EEETTEEEEEESSS-----SEEEEEEETTTE-EEE
T ss_pred CCEEEEee----cCEEEEEEccCcccchhhheec-ceEEEEEE--eccccEEEEEEccc-----CEEEEEEEccCCEEEE
Confidence 55577666 4678888877665 21111111 12223333 34466888887653 3466777875555555
Q ss_pred eeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+........+.+..+-+|++.++.+...+
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~g 194 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDG 194 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTS
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCC
Confidence 55432333456677776776554444433
No 438
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=67.27 E-value=69 Score=34.99 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=42.7
Q ss_pred eeeEEccCCCEEEEEEccCCC----CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 561 TMCNWSPDGEWIAFASDRDNP----GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
..+.|.|.|+..+........ ..+...+..-+...++.++.........+..++|||||+.+++.-...+
T Consensus 503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQHPG 576 (616)
T COG3211 503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQHPG 576 (616)
T ss_pred CceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecCCC
Confidence 467899999866655443210 1122222233445555665554445567889999999999987765543
No 439
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.17 E-value=43 Score=35.82 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=87.5
Q ss_pred CCCcEEEEEEEccCCCCcc--ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCc
Q 004971 483 ESSEVDIISINVDDVDGVS--AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPW 558 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~ 558 (721)
.++.+++|.+...+..... .....+.+...+....|-.|-++++.. +..|.+||.--|.+ +.++.. ..+
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D~giHlWDPFigr~--Laq~~dapk~~ 827 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----DGGIHLWDPFIGRL--LAQMEDAPKEG 827 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----cCcceeecccccch--hHhhhcCcccC
Confidence 5789999999876542111 223344566677888899998888754 45799999876664 332321 112
Q ss_pred CceeeEEccC-CCEEEEEEccCCCCCCceeEEEEecCCCceEE---eee-cCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971 559 SDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK---LIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISA 633 (721)
Q Consensus 559 ~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~---l~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 633 (721)
....+.--|+ .+.|+.+.-. ....+.++|....+-+. +.. .+.......++..+.|.+++..-..+
T Consensus 828 a~~~ikcl~nv~~~iliAgcs-----aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG---- 898 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCS-----AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG---- 898 (1034)
T ss_pred CCceeEecccCcchheeeecc-----chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC----
Confidence 2233333343 3445444321 22478888887765332 211 11234456778888888887644433
Q ss_pred CCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971 634 EPISTPHQYQPYGEIFKIKLDGSDLKR 660 (721)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~ 660 (721)
-|.+.|..+|++.+
T Consensus 899 -------------ci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 899 -------------CIAILDARNGKVIN 912 (1034)
T ss_pred -------------cEEEEecCCCceec
Confidence 37788877776543
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=65.86 E-value=2.2e+02 Score=32.23 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=55.3
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEE--ccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW--SPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
..-|.-++ ++.... ....|.+||..++...--..+ .....+.++.| .|||+.|+..+... +|.+|--
T Consensus 35 i~gss~~k-~a~V~~--~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~-------~v~l~~Q 103 (631)
T PF12234_consen 35 ISGSSIKK-IAVVDS--SRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH-------HVLLYTQ 103 (631)
T ss_pred EeecccCc-EEEEEC--CCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCc-------EEEEEEc
Confidence 34444444 444432 156899999998763212222 23344566666 68999888777663 4444421
Q ss_pred -----CCC-----ceEEee-ecCCCCCcCCeEECCCCCEEEEEE
Q 004971 594 -----NGT-----GLRKLI-QSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 594 -----~~~-----~~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
... ..+++- ..-+...+.+..|.+||..++-++
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 111 112221 111335677889999998766443
No 441
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=65.51 E-value=15 Score=35.59 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=53.9
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-CCCEEEEEEeeCCcee
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKN 536 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~ 536 (721)
.+....-.|..+.++.+. .+++.+.||++..-.. ....+..+......+.|+| ++..|+..++ +..
T Consensus 181 ~v~~l~~hp~qq~~v~cg------t~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~se---dGs 247 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCG------TDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSE---DGS 247 (319)
T ss_pred cchhhhCCcccccEEEEe------cCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEecC---CCc
Confidence 355666677777777776 3678889998875442 4445556666778889998 5677877777 789
Q ss_pred EEEEECCC
Q 004971 537 LYIMDAEG 544 (721)
Q Consensus 537 l~~~d~~~ 544 (721)
||.||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999875
No 442
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=65.36 E-value=1.5e+02 Score=29.58 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=82.5
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-----CCCcceEEccCCCEEEEEEeeC
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
.+.++.+..|...++.+ ++-++.+|.++...+ ......+..+. ..+.+..|+|....+..-+..
T Consensus 174 hiNSiS~NsD~et~lSa--------DdLrINLWnl~i~D~--sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS- 242 (460)
T COG5170 174 HINSISFNSDKETLLSA--------DDLRINLWNLEIIDG--SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS- 242 (460)
T ss_pred EeeeeeecCchheeeec--------cceeeeeccccccCC--ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-
Confidence 34567777777766553 345677776654332 01122222221 234556788876544433322
Q ss_pred CceeEEEEECCCCcc----cceEECcC----------CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-
Q 004971 533 GYKNLYIMDAEGGEG----YGLHRLTE----------GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG- 597 (721)
Q Consensus 533 g~~~l~~~d~~~g~~----~~~~~l~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~- 597 (721)
.+.|.+.|+..... ..+..++. -...+..+.||+.|++|+....- .+.+||+.-.+
T Consensus 243 -kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--------tvkiwDvnm~k~ 313 (460)
T COG5170 243 -KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--------TVKIWDVNMAKN 313 (460)
T ss_pred -CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--------eEEEEecccccC
Confidence 45677777653211 00111111 12335778999999998866554 68888875432
Q ss_pred eEEeeecC-----------CCCCc---CCeEECCCCCEEEEEEecCCCc
Q 004971 598 LRKLIQSG-----------SAGRA---NHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 598 ~~~l~~~~-----------~~~~~---~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
+.+.++.- ....+ ..+.||-|.+.+...+...+..
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfg 362 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFG 362 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccccee
Confidence 22222110 00111 2467899999888777766543
No 443
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=1.5e+02 Score=29.57 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=74.7
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce--ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS--LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG 448 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~ 448 (721)
.....++ +++++++....+ +.+.++..+..... .+..++....|.-.|++.++.. +..+.++|+..
T Consensus 89 ~~Dv~vs--e~yvyvad~ssG---------L~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSG---------LRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hheeEec--ccEEEEEcCCCc---------eEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence 3445666 556766654443 67777766644322 2333344456666688877775 77788889877
Q ss_pred CceEEEe-----e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEEcc
Q 004971 449 SNRRQVY-----F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSP 520 (721)
Q Consensus 449 g~~~~l~-----~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Sp 520 (721)
...-++. . +....++.| |++.+... .++...|.++.... .+.-+.... ........|+
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~-------~d~GL~ivDVSnp~-----sPvli~~~n~g~g~~sv~vsd 223 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAW-------RDGGLTIVDVSNPH-----SPVLIGSYNTGPGTYSVSVSD 223 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEE-------eCCCeEEEEccCCC-----CCeEEEEEecCCceEEEEecC
Confidence 6544443 1 122345554 33333332 24556666665433 222222222 1233344444
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
+-.+++ .- +..+.+.|.++.+
T Consensus 224 nr~y~v--vy---~egvlivd~s~~s 244 (370)
T COG5276 224 NRAYLV--VY---DEGVLIVDVSGPS 244 (370)
T ss_pred CeeEEE--Ec---ccceEEEecCCCC
Confidence 433333 22 3457777877654
No 444
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=65.07 E-value=1.7e+02 Score=30.00 Aligned_cols=104 Identities=10% Similarity=0.069 Sum_probs=57.1
Q ss_pred eCcCCCEEEEEeCCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971 426 FSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 426 ~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
+.+-+.+|++.....|+++++...+ ..... .........+.-+.++++.. ....+.++.++.... .
T Consensus 94 i~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD-------~~~sv~~~~~~~~~~----~ 162 (321)
T PF03178_consen 94 ICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGD-------AMKSVSLLRYDEENN----K 162 (321)
T ss_dssp EEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEE-------SSSSEEEEEEETTTE-----
T ss_pred hhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEE-------cccCEEEEEEEccCC----E
Confidence 3333556888888999999998777 54444 23333344444466777764 356778887776432 3
Q ss_pred eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
...+.... .......+-+|++.++ .++..++-.++.++
T Consensus 163 l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-
T ss_pred EEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEEC
Confidence 44444432 2345566776776444 44443333444443
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=64.93 E-value=91 Score=33.49 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=74.6
Q ss_pred EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC--------EEEEEEeeCCce
Q 004971 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK--------WIVFRSTRTGYK 535 (721)
Q Consensus 464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~--------~l~~~s~~~g~~ 535 (721)
...+.+.|.+.. ....-.+|.++...+ ..+..+..+... -+.|.|+.+ .|+-.+ +.
T Consensus 474 lh~~dssli~~d-------g~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS----~~ 537 (776)
T COG5167 474 LHDNDSSLIYLD-------GGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS----DY 537 (776)
T ss_pred eecCCcceEEec-------CCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeec----cc
Confidence 333444555543 345567888887654 123333333311 345555433 355444 56
Q ss_pred eEEEEECCCCcccceEECcCCCcCceeeEE----ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNW----SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611 (721)
Q Consensus 536 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~----SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 611 (721)
.|+++|+.-..-+ +...... ....--.| .-..-+|+.++..+ +|.+||--+...+...+. .+..+.
T Consensus 538 svFrIDPR~~gNK-i~v~esK-dY~tKn~Fss~~tTesGyIa~as~kG-------DirLyDRig~rAKtalP~-lG~aIk 607 (776)
T COG5167 538 SVFRIDPRARGNK-IKVVESK-DYKTKNKFSSGMTTESGYIAAASRKG-------DIRLYDRIGKRAKTALPG-LGDAIK 607 (776)
T ss_pred ceEEecccccCCc-eeeeeeh-hccccccccccccccCceEEEecCCC-------ceeeehhhcchhhhcCcc-ccccee
Confidence 7999987522110 2111111 11111122 22345899888875 899999766544444332 456778
Q ss_pred CeEECCCCCEEEEEEe
Q 004971 612 HPYFSPDGKSIVFTSD 627 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~ 627 (721)
++..+.+|++|+.+..
T Consensus 608 ~idvta~Gk~ilaTCk 623 (776)
T COG5167 608 HIDVTANGKHILATCK 623 (776)
T ss_pred eeEeecCCcEEEEeec
Confidence 8899999999876654
No 446
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.54 E-value=79 Score=33.27 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
...+.+||+|..+... .+..|++....+|+..+..+.......+-|.. .+.|-.+.+....
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks-----------------~y~l~~VelgRRm- 265 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS-----------------PYGLMHVELGRRM- 265 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc-----------------ccccceeehhhhh-
Confidence 3457899999998877 47789999999998766553322222222211 2222223222110
Q ss_pred ccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 500 VSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 500 ~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
...+.+..++ .......|.-.|++|+|.+- -.|.++++.+++
T Consensus 266 -averelek~~~~~~~~~~fdes~~flly~t~----~gikvin~~tn~ 308 (558)
T KOG0882|consen 266 -AVERELEKHGSTVGTNAVFDESGNFLLYGTI----LGIKVINLDTNT 308 (558)
T ss_pred -hHHhhHhhhcCcccceeEEcCCCCEEEeecc----eeEEEEEeecCe
Confidence 0112233333 23345688889999999883 567788887776
No 447
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=63.44 E-value=1.6e+02 Score=34.10 Aligned_cols=177 Identities=7% Similarity=0.049 Sum_probs=89.5
Q ss_pred CCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEE-cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 430 GDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVW-DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 430 G~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~-spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
+..+...+ ...+..+|+.+.+..++..-....+.. -.+++.++... ..+++.+-+.+.-. ....+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~-------t~G~V~LrD~~s~~-----~iht~~ 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGD-------TRGTVFLRDPNSFE-----TIHTFD 214 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeec-------ccceEEeecCCcCc-----eeeeee
Confidence 34455543 556778888877766655211111222 22444444332 34555555544332 445555
Q ss_pred cCCCCCcceEEccCCCEEEEEEeeC------CceeEEEEECCCCcccceEECcCCCcCceeeEEccC-CCEEEEEEccCC
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTRT------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-GEWIAFASDRDN 580 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~~------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~ 580 (721)
.+.+... .|+-.|+.|+...-.. -+.-|.+||+..-+. +..+.-.. ....+.|.|. -.++++++..+
T Consensus 215 aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~-~P~flrf~Psl~t~~~V~S~sG- 288 (1118)
T KOG1275|consen 215 AHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPY-GPQFLRFHPSLTTRLAVTSQSG- 288 (1118)
T ss_pred cccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhc--cCCccccc-CchhhhhcccccceEEEEeccc-
Confidence 5554443 4555677777654321 133466788875432 22222221 1234566665 34566666553
Q ss_pred CCCCceeEEEEec---CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 581 PGSGSFEMYLIHP---NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 581 ~~~~~~~i~~~d~---~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+.-..|. ...................+.+|++|..|+|....+.
T Consensus 289 ------q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 289 ------QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred ------ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc
Confidence 4444552 2211111111112234677889999999999887764
No 448
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=63.27 E-value=92 Score=31.65 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=88.6
Q ss_pred eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971 437 EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515 (721)
Q Consensus 437 ~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 515 (721)
...++-+.++++|..+-+. ...+....|.-.+..+.-.. .++.+..+++.....+......++.... .+..
T Consensus 232 ~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~Gc-------RngeI~~iDLR~rnqG~~~~a~rlyh~S-svts 303 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGC-------RNGEIFVIDLRCRNQGNGWCAQRLYHDS-SVTS 303 (425)
T ss_pred ccceeEEEEeecccccccccchhHHHHHhcccCCeeEecc-------cCCcEEEEEeeecccCCCcceEEEEcCc-chhh
Confidence 3667888899888765444 56677777766666555544 4566666666543211112334443332 4444
Q ss_pred eEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc-eEECcCCC--cCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 516 PSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEGP--WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 516 ~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~-~~~l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
+..-. ++.+|...+. ...|-+||..--+.++ +.+...+. .....+...+....|+....+ ....+|
T Consensus 304 lq~Lq~s~q~LmaS~M---~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD-------cytRiW 373 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDM---TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD-------CYTRIW 373 (425)
T ss_pred hhhhccccceEeeccC---cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe-------eEEEEE
Confidence 44333 5677776665 6788899976333211 22222221 111122344554444443333 467889
Q ss_pred ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.++.|....-.+ ....+-+-|+..+++.+...+
T Consensus 374 sl~~ghLl~tip------f~~s~~e~d~~sv~~~sr~~k 406 (425)
T KOG2695|consen 374 SLDSGHLLCTIP------FPYSASEVDIPSVAFDSRLGK 406 (425)
T ss_pred ecccCceeeccC------CCCccccccccceehhccccc
Confidence 998886543222 111222345555666555443
No 449
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=62.84 E-value=17 Score=22.00 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
+...+..+.|+++++.++.+..+. .+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~-------~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDG-------TIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCC-------eEEEcC
Confidence 334567889999998887777664 677664
No 450
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=62.52 E-value=1.6e+02 Score=28.73 Aligned_cols=186 Identities=15% Similarity=0.218 Sum_probs=96.2
Q ss_pred CcCCCEEEEE-eCCcEEEEECCCCceEEEeecCc----eeeEEcCCCCeEEE--EecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 427 SPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFKNA----FSTVWDPVREAVVY--TSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 427 SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~~~----~~~~~spdg~~la~--~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
.|+-+.++.. ....+.+||+++...+.+..+.. ....|--.|+.+-+ .++ .....+.+|.++.+..
T Consensus 64 ~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASd-----R~~~~i~~y~Idp~~~-- 136 (364)
T COG4247 64 NPDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASD-----RQNDKIVFYKIDPNPQ-- 136 (364)
T ss_pred CcCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEeccc-----ccCCeEEEEEeCCCcc--
Confidence 3555555444 57889999999887766653322 23334445555443 333 2356788888887654
Q ss_pred ccceEEcccCC-------CCCcceEE--ccC-CCEEEEEEeeCCce-eEEEEECCCCcc--cceEECcCCCcCceeeEEc
Q 004971 500 VSAVRRLTTNG-------KNNAFPSV--SPD-GKWIVFRSTRTGYK-NLYIMDAEGGEG--YGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 500 ~~~~~~l~~~~-------~~~~~~~~--SpD-g~~l~~~s~~~g~~-~l~~~d~~~g~~--~~~~~l~~~~~~~~~~~~S 566 (721)
.++.++... ...+.++. ||- |.+-+|.+.+.|.. +.-++|-..|+. +.++++.-.... ..+. .
T Consensus 137 --~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQT-EG~V-a 212 (364)
T COG4247 137 --YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQT-EGMV-A 212 (364)
T ss_pred --ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcc-ccee-e
Confidence 556665542 12233333 343 77888888776544 344555555542 123444322221 1222 2
Q ss_pred cCCC-EEEEEEccCCCCCCceeEEEEecC--CCceEEeeecCCC-----CCc--CCeEECCCCCEEEEEEecCC
Q 004971 567 PDGE-WIAFASDRDNPGSGSFEMYLIHPN--GTGLRKLIQSGSA-----GRA--NHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 567 pDG~-~l~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~-----~~~--~~~~~SpDG~~l~~~~~~~~ 630 (721)
-|.. .|+++..+. .||.+..+ +|...++...... ..+ -.+-+-|+|+-.+.++..++
T Consensus 213 DdEtG~LYIaeEdv-------aiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGn 279 (364)
T COG4247 213 DDETGFLYIAEEDV-------AIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGN 279 (364)
T ss_pred ccccceEEEeeccc-------eeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCC
Confidence 3333 344444442 67776653 3333333321000 111 23567899887666666554
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.35 E-value=48 Score=31.95 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=51.3
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee-------ec------CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-------QS------GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-------~~------~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.+..++++|++....+ .+|+||+.+++..--. .. .....+.....+.+|.=|+..++.
T Consensus 17 ~l~~~~~~Ll~iT~~G-------~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng-- 87 (219)
T PF07569_consen 17 FLECNGSYLLAITSSG-------LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG-- 87 (219)
T ss_pred EEEeCCCEEEEEeCCC-------eEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC--
Confidence 3566788988888776 8999999887542111 10 012334456677777766665542
Q ss_pred CcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971 631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~ 665 (721)
+.|.|+.+=+...+|++.-
T Consensus 88 ----------------~~y~y~~~L~~W~~vsd~w 106 (219)
T PF07569_consen 88 ----------------DSYSYSPDLGCWIRVSDSW 106 (219)
T ss_pred ----------------CEEEeccccceeEEeccch
Confidence 4888998888888888743
No 452
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=62.05 E-value=67 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.2
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~ 363 (721)
-+.++-+|= |.++|++.....|. |+.||+...+...|+
T Consensus 313 LITDilISm-DDRFLYvs~WLHGD----irQYdIsDP~n~kLt 350 (476)
T KOG0918|consen 313 LITDILISL-DDRFLYVSNWLHGD----IRQYDISDPKNPKLT 350 (476)
T ss_pred hhheeEEee-cCcEEEEEeeeecc----eeeeccCCCCCcceE
Confidence 456677888 99999887665544 999999876544443
No 453
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.05 E-value=1.8e+02 Score=29.19 Aligned_cols=102 Identities=15% Similarity=0.276 Sum_probs=66.5
Q ss_pred EEEE-eCCcEEEEECCCCceEEEe----------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971 433 IAFV-EFPGVYVVNSDGSNRRQVY----------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS 501 (721)
Q Consensus 433 la~~-~~~~l~v~d~~~g~~~~l~----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 501 (721)
|-|. .-+.|..+|.+.++.+.|- -+.++++-+.|-...|+++.. ....+.-||.++..++
T Consensus 71 IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~-----DGh~nLGvy~ldr~~g---- 141 (339)
T PF09910_consen 71 IDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARA-----DGHANLGVYSLDRRTG---- 141 (339)
T ss_pred EEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEec-----CCcceeeeEEEcccCC----
Confidence 3444 2567888888888766554 356788999999999998852 2356788999998775
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEe--eCCceeEEEEECCCCcc
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRST--RTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~--~~g~~~l~~~d~~~g~~ 547 (721)
..+.|...... ....+ .| ..+|..+ ..+...|.++|+.+++.
T Consensus 142 ~~~~L~~~ps~-KG~~~-~D--~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 142 KAEKLSSNPSL-KGTLV-HD--YACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ceeeccCCCCc-CceEe-ee--eEEEeccccccCCceEEEEEccCCeE
Confidence 77777765521 11111 22 2222221 23567899999998874
No 454
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.68 E-value=2.2e+02 Score=30.03 Aligned_cols=137 Identities=19% Similarity=0.294 Sum_probs=66.8
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcce--EEccCCCE--EEEEEeeC-Cc--eeEEEEECCCCcccceEECcCCC---
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFP--SVSPDGKW--IVFRSTRT-GY--KNLYIMDAEGGEGYGLHRLTEGP--- 557 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~SpDg~~--l~~~s~~~-g~--~~l~~~d~~~g~~~~~~~l~~~~--- 557 (721)
-|+.+++++. .+..+..+..+.-.+ .|.-+|+. |+..++|. +. -.||.+|.+++. +..+....
T Consensus 79 GL~VYdL~Gk----~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~---L~~v~~~~~p~ 151 (381)
T PF02333_consen 79 GLYVYDLDGK----ELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE---LTDVTDPAAPI 151 (381)
T ss_dssp EEEEEETTS-----EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE---EEE-CBTTC-E
T ss_pred CEEEEcCCCc----EEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc---ceEcCCCCccc
Confidence 4555566553 445554332111111 23235665 57777775 23 357777877676 55554321
Q ss_pred ----cCceeeEE--cc-CCCEEEEEEccCCCCCCceeEEEEec-CCCce----EEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971 558 ----WSDTMCNW--SP-DGEWIAFASDRDNPGSGSFEMYLIHP-NGTGL----RKLIQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 558 ----~~~~~~~~--Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~-~~~~~----~~l~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
..+..+++ +| +|+..+|...+. +....|.+.. ..+.. .+-+. ....+...+....-.+||+.
T Consensus 152 ~~~~~e~yGlcly~~~~~g~~ya~v~~k~----G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 152 ATDLSEPYGLCLYRSPSTGALYAFVNGKD----GRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRLYVG 225 (381)
T ss_dssp E-SSSSEEEEEEEE-TTT--EEEEEEETT----SEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEE
T ss_pred ccccccceeeEEeecCCCCcEEEEEecCC----ceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCEEEe
Confidence 12334444 44 577777776653 4444444433 33321 12222 23456667777777778776
Q ss_pred EecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 626 SDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
..+.+ ||.|+++
T Consensus 226 EE~~G-----------------IW~y~Ae 237 (381)
T PF02333_consen 226 EEDVG-----------------IWRYDAE 237 (381)
T ss_dssp ETTTE-----------------EEEEESS
T ss_pred cCccE-----------------EEEEecC
Confidence 66554 8888875
No 455
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=60.88 E-value=17 Score=25.05 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.9
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
..+..+.|+|....||+++ .++.+.||+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t-------~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGT-------EDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEE-------CCCeEEEEECC
Confidence 3466899999999999997 57888888874
No 456
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=60.73 E-value=28 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=26.5
Q ss_pred CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.....++|++.++.|+|+..... .|++.+++|..
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~----------------~I~~~~~~g~~ 42 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLD----------------VIEVANLDGTN 42 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCC----------------EEEEEeCCCCC
Confidence 34566999999999999887653 49999988753
No 457
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=60.08 E-value=13 Score=35.81 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=49.3
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC-CCEEEEEEccCCCCCCceeEEEE
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
+..++-.|-.+.++..... +..+-+||...... ....+..+...++.+.|.|. +..|+.++.++ .|+.|
T Consensus 182 v~~l~~hp~qq~~v~cgt~--dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG-------slw~w 251 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTD--DGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG-------SLWHW 251 (319)
T ss_pred chhhhCCcccccEEEEecC--CCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCC-------cEEEE
Confidence 5566777777777776654 45566777765431 12233345566778899884 67888888776 89999
Q ss_pred ecCC
Q 004971 592 HPNG 595 (721)
Q Consensus 592 d~~~ 595 (721)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9876
No 458
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=59.75 E-value=2.1e+02 Score=29.16 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=71.4
Q ss_pred EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp 617 (721)
.++|+.+++. +..+-....+|.|. ||+ |.+.... ...|+.+|.++|+.+.+.. -.+....+.|.
T Consensus 188 ~vidv~s~ev-----l~~GLsmPhSPRWh-dgr-Lwvldsg------tGev~~vD~~~G~~e~Va~--vpG~~rGL~f~- 251 (335)
T TIGR03032 188 CVIDIPSGEV-----VASGLSMPHSPRWY-QGK-LWLLNSG------RGELGYVDPQAGKFQPVAF--LPGFTRGLAFA- 251 (335)
T ss_pred EEEEeCCCCE-----EEcCccCCcCCcEe-CCe-EEEEECC------CCEEEEEcCCCCcEEEEEE--CCCCCccccee-
Confidence 3478887762 33333334678887 555 5555432 2489999999888887765 45677889998
Q ss_pred CCCEEEEEEecCC--CcCCCCCCC-CCCCCCccEEEEEcCCCCeE---EeccCCCCCCCceecCC
Q 004971 618 DGKSIVFTSDYGG--ISAEPISTP-HQYQPYGEIFKIKLDGSDLK---RLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 618 DG~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~---~lt~~~~~~~~~~~sp~ 676 (721)
|+++++.-.... ..+....-. ..-.....|+++|+.+|... ++...-....+.+.-|.
T Consensus 252 -G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 252 -GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred -CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 888766544322 111111000 11112356999999999853 33332223455666664
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=59.10 E-value=2e+02 Score=28.82 Aligned_cols=128 Identities=12% Similarity=0.094 Sum_probs=67.4
Q ss_pred cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
..+.+ .+++++++... ..|+++|+.+.. ++++... ...+.. ..|+-.|++.+.+..+.+
T Consensus 90 ~Dv~v---se~yvyvad~s-----sGL~IvDIS~P~sP~~~~~l-nt~gya--ygv~vsGn~aYVadlddg--------- 149 (370)
T COG5276 90 ADVRV---SEEYVYVADWS-----SGLRIVDISTPDSPTLIGFL-NTDGYA--YGVYVSGNYAYVADLDDG--------- 149 (370)
T ss_pred heeEe---cccEEEEEcCC-----CceEEEeccCCCCcceeccc-cCCceE--EEEEecCCEEEEeeccCc---------
Confidence 45666 55777776533 339999998764 3333322 112223 334444888877654443
Q ss_pred eEEEeccCCCCcceeccc-----CCCCceeCcCCCEEEEE-eCCcEEEEECCCCc-eEEEe--e--cCceeeEEcCCCCe
Q 004971 402 LLLENIKSPLPDISLFRF-----DGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSN-RRQVY--F--KNAFSTVWDPVREA 470 (721)
Q Consensus 402 l~~~~~~~~~~~~~~~~~-----~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~-~~~l~--~--~~~~~~~~spdg~~ 470 (721)
+.+.++..+.......+. .....++| |++.+.. .+..|.++|+.... ++.+. + ........|++-.+
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence 566676665443322211 11234555 5554444 57889999997654 34333 1 23444445544444
Q ss_pred EE
Q 004971 471 VV 472 (721)
Q Consensus 471 la 472 (721)
++
T Consensus 228 ~v 229 (370)
T COG5276 228 LV 229 (370)
T ss_pred EE
Confidence 43
No 460
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=58.18 E-value=20 Score=21.61 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=21.6
Q ss_pred cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
.+...+..+.|+++++.++..+. +..+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~---d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASD---DGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecC---CCeEEEcC
Confidence 33445677899999888877765 55677664
No 461
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=56.74 E-value=36 Score=22.17 Aligned_cols=31 Identities=6% Similarity=-0.211 Sum_probs=25.2
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
...++|+|+++.|+++.... ..|++.++++.
T Consensus 11 ~~~la~d~~~~~lYw~D~~~------~~I~~~~~~g~ 41 (43)
T smart00135 11 PNGLAVDWIEGRLYWTDWGL------DVIEVANLDGT 41 (43)
T ss_pred cCEEEEeecCCEEEEEeCCC------CEEEEEeCCCC
Confidence 46799999999999988753 48999888764
No 462
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.05 E-value=1.4e+02 Score=34.56 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
+..+.+||+|+.|+.++...|.++.+-.. |.++|. ++.....+..-.+..+.
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r--------------~g~~~~----------~~~g~~~i~Crt~~v~~---- 138 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVVVLELPRR--------------WGKNGE----------FEDGKKEINCRTVPVDE---- 138 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEeccc--------------cCcccc----------ccCCCcceeEEEEEech----
Confidence 44578899999999999999999876321 111110 00111222222222211
Q ss_pred cceEEcc-cCCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCC
Q 004971 501 SAVRRLT-TNGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 501 ~~~~~l~-~~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
..+. .....+....|+|. +..|++... ++.|++||+...
T Consensus 139 ---~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts---dn~lR~y~~~~~ 181 (717)
T PF10168_consen 139 ---RFFTSNSSLEIKQVRWHPWSESDSHLVVLTS---DNTLRLYDISDP 181 (717)
T ss_pred ---hhccCCCCceEEEEEEcCCCCCCCeEEEEec---CCEEEEEecCCC
Confidence 0111 11234556788886 478888877 788999998643
No 463
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.32 E-value=2.5e+02 Score=28.54 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=68.2
Q ss_pred eCCcEEEEECCCCc-eEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCC
Q 004971 437 EFPGVYVVNSDGSN-RRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGK 511 (721)
Q Consensus 437 ~~~~l~v~d~~~g~-~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~ 511 (721)
..+.||.- .++|+ -+.+. .+.+....-++||+++++.+.+. +|..-..+. ..-..... ...
T Consensus 122 ~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~----------~~~s~~~G~---~~w~~~~r~~~~ 187 (302)
T PF14870_consen 122 DRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN----------FYSSWDPGQ---TTWQPHNRNSSR 187 (302)
T ss_dssp TT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS----------EEEEE-TT----SS-EEEE--SSS
T ss_pred CCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc----------EEEEecCCC---ccceEEccCccc
Confidence 34555544 34444 34443 45667788899999999886432 221111111 01111111 224
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEE-CCCCcc--cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMD-AEGGEG--YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d-~~~g~~--~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
++..+.|+||+...+ ... ...|+.-+ ....+. +.+..+......+..++|.+++...+.+. .+ .|
T Consensus 188 riq~~gf~~~~~lw~-~~~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G-------~l 255 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWM-LAR---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SG-------TL 255 (302)
T ss_dssp -EEEEEE-TTS-EEE-EET---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--------E
T ss_pred eehhceecCCCCEEE-EeC---CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Cc-------cE
Confidence 677899999977444 443 45677666 222221 00111222334457889998876554333 32 45
Q ss_pred EEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEE
Q 004971 589 YLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~ 623 (721)
+ +..++|+.-+-... ........+.|..+.+-++
T Consensus 256 ~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 256 L-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp E-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred E-EeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 4 45566664443322 1233456666655544333
No 464
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.04 E-value=3e+02 Score=31.37 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=35.1
Q ss_pred CcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
..|++++..|.....+. .+.+..+.||.+...|++. .++.+.+|.+-.
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~--------k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQ--------KDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEe--------ccceEEEeecch
Confidence 35888888876655554 4577889999988887776 457788877654
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=53.93 E-value=2.2e+02 Score=29.21 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=56.1
Q ss_pred eeEEEEECCCCccc-ceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971 535 KNLYIMDAEGGEGY-GLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612 (721)
Q Consensus 535 ~~l~~~d~~~g~~~-~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 612 (721)
..++.+|+.+.+.. ....+...+... ...+..-+++ |++....... .....+++||+.+.+-.++...........
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~-iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~ 165 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGT-LYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQP 165 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCE-EEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcc
Confidence 47888888765520 012333222111 1112223454 4444332110 123589999999887666643211122333
Q ss_pred eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
....-+++..++...+... ..++++||+++.+.+.+..
T Consensus 166 ~~~~~~~~iYv~GG~~~~~-------------~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 166 VCVKLQNELYVFGGGSNIA-------------YTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred eEEEECCEEEEEcCCCCcc-------------ccceEEEecCCCeeEECCC
Confidence 3334455544444332211 1247899998888877764
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.93 E-value=96 Score=29.87 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccc----eEECcC--------CCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG----LHRLTE--------GPWSDTMCNWSPDGEWIAFASDRDNPGSG 584 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~----~~~l~~--------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 584 (721)
.+..++++|++... ...+|+||+.+++... +..+.. ....+.....+.+|.-|+..++.
T Consensus 17 ~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng------ 87 (219)
T PF07569_consen 17 FLECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG------ 87 (219)
T ss_pred EEEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC------
Confidence 35567888888887 7899999999876410 001111 11234556667777766665543
Q ss_pred ceeEEEEecCCCceEEee
Q 004971 585 SFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 585 ~~~i~~~d~~~~~~~~l~ 602 (721)
+.|.|+.+=+.-.++.
T Consensus 88 --~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 88 --DSYSYSPDLGCWIRVS 103 (219)
T ss_pred --CEEEeccccceeEEec
Confidence 5677776655555543
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=53.38 E-value=2.2e+02 Score=30.22 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=21.0
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+..+-..|||+.+++.+ ..+..++.++...
T Consensus 222 ~v~qllL~Pdg~~LYv~~--------g~~~~v~~L~~r~ 252 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRT--------GSELVVALLDKRS 252 (733)
T ss_pred chHhhEECCCCCEEEEec--------CCeEEEEeecccc
Confidence 344566778888888875 3667777776543
No 468
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=52.01 E-value=3.8e+02 Score=29.88 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=46.3
Q ss_pred eEEccCCCEEEEEEccCCCCC-----C----ceeEEEEecCCCceEEeeecC-CCCCcC----CeE---ECCCCC--EEE
Q 004971 563 CNWSPDGEWIAFASDRDNPGS-----G----SFEMYLIHPNGTGLRKLIQSG-SAGRAN----HPY---FSPDGK--SIV 623 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~-----~----~~~i~~~d~~~~~~~~l~~~~-~~~~~~----~~~---~SpDG~--~l~ 623 (721)
+++.|.-..|++......+.. + ...|.-+|+++|+.+=..+.. |+.... .+. ...||+ .++
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 467777777777664321111 1 347899999999876333321 221111 111 225776 455
Q ss_pred EEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
....+.+ .+|++|..+|+.
T Consensus 319 ~~~~K~G----------------~~~vlDr~tG~~ 337 (527)
T TIGR03075 319 AHADRNG----------------FFYVLDRTNGKL 337 (527)
T ss_pred EEeCCCc----------------eEEEEECCCCce
Confidence 5565554 499999988876
No 469
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=51.78 E-value=84 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.7
Q ss_pred eeeEEcCCCCeEEEEecC
Q 004971 460 FSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~ 477 (721)
..-.|||||++|-|+-+.
T Consensus 71 HvHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTYND 88 (122)
T ss_pred cceEECCCCCEEEEEecc
Confidence 356899999999998753
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.76 E-value=3.4e+02 Score=28.95 Aligned_cols=137 Identities=13% Similarity=0.031 Sum_probs=69.5
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc-eEEcccCC-CCCcceEEccCCCEEEEEEeeCCcee
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA-VRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKN 536 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~ 536 (721)
...+..++||+.+++...+ .+|.-..++. . -..+.... .....+.|.+||..+++.. ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G----------~~~~s~d~G~----~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~----~G~ 302 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRG----------NFYLTWEPGQ----PYWQPHNRASARRIQNMGWRADGGLWLLTR----GGG 302 (398)
T ss_pred eeeEEEcCCCCEEEEECCc----------cEEEecCCCC----cceEEecCCCccceeeeeEcCCCCEEEEeC----Cce
Confidence 3445677888888887533 2333333321 1 12222222 3556788899988776554 345
Q ss_pred EEEEECCCCccc---ceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--cCCCCC
Q 004971 537 LYIMDAEGGEGY---GLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--SGSAGR 609 (721)
Q Consensus 537 l~~~d~~~g~~~---~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~ 609 (721)
|+.- .+.|+.. ....+.. ....+..+.|.+|+..++.+ ..+ .+++- .++|+.-+... ......
T Consensus 303 l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G-------~v~~s-~D~G~tW~~~~~~~~~~~~ 372 (398)
T PLN00033 303 LYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSG-------ILLRS-TDGGKSWKRDKGADNIAAN 372 (398)
T ss_pred EEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCC-------cEEEe-CCCCcceeEccccCCCCcc
Confidence 5543 3334311 1222222 22335678898887754444 332 34444 45665433322 112334
Q ss_pred cCCeEECCCCCEEE
Q 004971 610 ANHPYFSPDGKSIV 623 (721)
Q Consensus 610 ~~~~~~SpDG~~l~ 623 (721)
...+.|.++++.++
T Consensus 373 ly~v~f~~~~~g~~ 386 (398)
T PLN00033 373 LYSVKFFDDKKGFV 386 (398)
T ss_pred eeEEEEcCCCceEE
Confidence 56777777666544
No 471
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=50.49 E-value=4.2e+02 Score=29.91 Aligned_cols=200 Identities=6% Similarity=-0.071 Sum_probs=94.4
Q ss_pred cEEEEECCCCceEEEee---c-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971 440 GVYVVNSDGSNRRQVYF---K-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515 (721)
Q Consensus 440 ~l~v~d~~~g~~~~l~~---~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 515 (721)
.+..+|...++...+.. . .....+.- +| .|+++.. ..- ....-..++.++.... ....+.........
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~-~lYv~GG-~~~-~~~~l~~ve~YD~~~~----~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NG-KLYVVGG-YDS-GSDRLSSVERYDPRTN----QWTPVAPMNTKRSD 373 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CC-EEEEEcc-ccC-CCcccceEEEecCCCC----ceeccCCccCcccc
Confidence 46667777666555541 1 11122222 22 4444432 110 1122234555555443 33344433322233
Q ss_pred eEEccCCCEEEEEEeeCCc---eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 516 PSVSPDGKWIVFRSTRTGY---KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~---~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
.....=+..|+.....+|. ..+-+||..+.+-..+..+..... ..-.-.-+|+ |+...........-..+..||
T Consensus 374 ~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~--~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS--GHGVAVLGGK-LYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee--eeEEEEECCE-EEEEcCcCCCccccceEEEEc
Confidence 3333334456665554432 368889988776322222222111 1122233454 555444321101225799999
Q ss_pred cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
..+++-+.+.+.........++ +-+++..+..+.++.. ....+.+||+.+.+.+.++.
T Consensus 451 P~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~------------~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTS------------ALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred CCCCceeecCCcccccccceEE-EECCEEEEECCccCCC------------ccceEEEEcCCCCceeEccc
Confidence 9998877776542222222233 3344444443433311 12248889999988888864
No 472
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=49.20 E-value=3.4e+02 Score=28.48 Aligned_cols=33 Identities=3% Similarity=-0.103 Sum_probs=25.1
Q ss_pred CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe
Q 004971 423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~ 455 (721)
.+-+|-|.++|++.. .+.|+.||+.......|+
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLt 350 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLT 350 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCCCCcceE
Confidence 456788999888874 889999999876644444
No 473
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=47.67 E-value=85 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=26.8
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
.+.+..+-...+.+..|||++.|++++.-. ..|++|...
T Consensus 46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~------~~I~vy~~~ 84 (86)
T PF01731_consen 46 VKVVASGFSFANGIAISPDKKYLYVASSLA------HSIHVYKRH 84 (86)
T ss_pred eEEeeccCCCCceEEEcCCCCEEEEEeccC------CeEEEEEec
Confidence 344444434457899999999999888653 367777653
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=47.50 E-value=98 Score=24.69 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=18.2
Q ss_pred CCcCCeEECCCCCEEEEEEecCC
Q 004971 608 GRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.....+.+|||+++|+.++.-..
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCC
Confidence 34567999999999998887654
No 475
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=47.28 E-value=1.9e+02 Score=32.75 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=55.8
Q ss_pred EEEEE--eCCcEEEEECCCCceEE--Ee--ecCceeeEE--cCCCCeEEEEecCCCCCCCCCcEEEEEEE----ccCCCC
Q 004971 432 RIAFV--EFPGVYVVNSDGSNRRQ--VY--FKNAFSTVW--DPVREAVVYTSGGPEFASESSEVDIISIN----VDDVDG 499 (721)
Q Consensus 432 ~la~~--~~~~l~v~d~~~g~~~~--l~--~~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~i~~~~----~~~~~~ 499 (721)
+++.+ +...+.+||..++.... .. .+.+.++.| .|||+.+..+.. ...+.||.-- .+....
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-------~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-------PHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-------CcEEEEEEccchhhhcCCcc
Confidence 45555 36789999998886322 22 456777777 589998887763 2344444221 111101
Q ss_pred ccceEEc--ccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 500 VSAVRRL--TTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 500 ~~~~~~l--~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
....+.+ .... ..+....|.+||..++.. .++++++|-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-----GNqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-----GNQLFVFDK 155 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEe-----CCEEEEECC
Confidence 1122222 1111 356678999999755544 357888764
No 476
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.44 E-value=2.9e+02 Score=32.02 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=41.1
Q ss_pred CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC----------Cc----eEEeee------cCCCCCcCCeEEC
Q 004971 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG----------TG----LRKLIQ------SGSAGRANHPYFS 616 (721)
Q Consensus 557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~----------~~----~~~l~~------~~~~~~~~~~~~S 616 (721)
.+.+..+..||+|+.|++.+.. .|.++.+-. |+ ++.+.- ......+..+.|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~--------~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPR--------GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWH 155 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCC--------cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEc
Confidence 4567889999999999999876 455555421 11 111110 0122234567888
Q ss_pred CC---CCEEEEEEecCC
Q 004971 617 PD---GKSIVFTSDYGG 630 (721)
Q Consensus 617 pD---G~~l~~~~~~~~ 630 (721)
|. +..|++...++.
T Consensus 156 P~s~~~~~l~vLtsdn~ 172 (717)
T PF10168_consen 156 PWSESDSHLVVLTSDNT 172 (717)
T ss_pred CCCCCCCeEEEEecCCE
Confidence 87 588888888775
No 477
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=44.88 E-value=1.3e+02 Score=37.81 Aligned_cols=120 Identities=9% Similarity=0.058 Sum_probs=69.6
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
.+....|+.+|....++- .++.+.+|..... .......+......++|-- ..++.......+..+
T Consensus 2253 ~vtr~~f~~qGnk~~i~d-------~dg~l~l~q~~pk------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~ 2317 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVD-------GDGDLSLWQASPK------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNV 2317 (2439)
T ss_pred hhhhhhhcccCCceeeec-------cCCceeecccCCc------ceeccccCCccccceeeee--hhhhccccCCCCCcc
Confidence 455677888888777663 5678888877521 2222223333444455543 333333333345678
Q ss_pred EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
.+||..-....-... +.+....+-+++.|.-+.|+.++.++ .+++||+.-.+.+.
T Consensus 2318 ~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G-------~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2318 CLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKG-------EVCLFDIRQRQLRH 2372 (2439)
T ss_pred cchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcC-------cEEEeehHHHHHHH
Confidence 888753211101222 55666678899999877665555554 89999997655443
No 478
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=44.02 E-value=5.2e+02 Score=29.16 Aligned_cols=112 Identities=9% Similarity=0.010 Sum_probs=60.4
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..+..||..+++-..+..+...... ..++ .=+++ |+....... .+....+..||..+.+.+.+... ........
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~-iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m--~~~rs~~g 517 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGK-IYVVGGFDG-TSALSSVERYDPETNQWTMVAPM--TSPRSAVG 517 (571)
T ss_pred ceEEEEcCCCCceeecCCccccccc-ceEE-EECCE-EEEECCccC-CCccceEEEEcCCCCceeEcccC--cccccccc
Confidence 4788999998873222222222221 1222 23444 555444321 12345689999999887777543 22233343
Q ss_pred ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
....+..|+......+. .....+-.||..+.+.+..+.
T Consensus 518 ~~~~~~~ly~vGG~~~~-----------~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGN-----------NNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEECCEEEEEecccCc-----------cccceeEEcCCCCCceeeCCC
Confidence 44445556655554332 112357777888887777765
No 479
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=43.92 E-value=4.5e+02 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.4
Q ss_pred CceeCcC-CCEEEEEeCCcEEEEECCCCceEEEe
Q 004971 423 FPSFSPK-GDRIAFVEFPGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 423 ~~~~SpD-G~~la~~~~~~l~v~d~~~g~~~~l~ 455 (721)
.++.+|. +.+|+|+....+|+.++.+++.++++
T Consensus 204 dP~lcP~~~~fia~i~~~dl~V~n~~~~~ekrlt 237 (867)
T KOG2281|consen 204 DPKLCPADPDFIAYIKVCDLWVLNILTGEEKRLT 237 (867)
T ss_pred CcccCCCCccceeeeehhhhhhhhhhhchhhcee
Confidence 4677765 88999999999999999988877766
No 480
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=43.72 E-value=68 Score=21.68 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=20.5
Q ss_pred CcCCeEECCCCC---EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 609 RANHPYFSPDGK---SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 609 ~~~~~~~SpDG~---~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.+....|||+.. .|+++...+ .+.++|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g-----------------~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQG-----------------RVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCC-----------------eEEEEEccc
Confidence 456788998554 666655443 499999874
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=42.98 E-value=4.9e+02 Score=28.57 Aligned_cols=142 Identities=12% Similarity=0.131 Sum_probs=63.9
Q ss_pred CcEEEEECCCCceEEEeecCce--eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCC
Q 004971 439 PGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNN 513 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~~~~~--~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~ 513 (721)
...+++|.+|.-.-.+...... .+...++|..++... ..+..++..+. ......... ...
T Consensus 128 ~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----------~~~~e~D~~G~----v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 128 SYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----------NRLYEIDLLGK----VIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----------TEEEEE-TT------EEEEEE--TTEE-B-
T ss_pred ceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----------CceEEEcCCCC----EEEeeecCCcccccc
Confidence 3455556554332223211111 156778888777653 34555555542 222222222 124
Q ss_pred cceEEccCCCEEEEEEe-------eC---CceeEEEEECCCCcccceEECcCC------------------------C-c
Q 004971 514 AFPSVSPDGKWIVFRST-------RT---GYKNLYIMDAEGGEGYGLHRLTEG------------------------P-W 558 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~-------~~---g~~~l~~~d~~~g~~~~~~~l~~~------------------------~-~ 558 (721)
......|+|..|+.+.. .. -...|..+| .+|+....-.+..+ . .
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 55788899999988873 11 134577778 66764111001000 0 1
Q ss_pred CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 559 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
.++++.+.|....|++++... ..|+.+|..+++..=+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~------s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQ------SAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-------EEEEEE-TTS-EEEEE
T ss_pred ccCccEEeCCCCeEEEEcCcc------eEEEEEECCCCcEEEEe
Confidence 145678888666677766543 37999997777655333
No 482
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=42.70 E-value=3.8e+02 Score=27.24 Aligned_cols=107 Identities=12% Similarity=0.198 Sum_probs=57.9
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-C---------c-CceeeEEc----cCCCEEEEEEcc--
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-P---------W-SDTMCNWS----PDGEWIAFASDR-- 578 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~---------~-~~~~~~~S----pDG~~l~~~~~~-- 578 (721)
+...++|.+|+.... ...|+++|..+|+. +-++... . + ....+.|- +++..++|-...
T Consensus 149 V~~~~~G~yLiS~R~---~~~i~~I~~~tG~I--~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~ 223 (299)
T PF14269_consen 149 VDKDDDGDYLISSRN---TSTIYKIDPSTGKI--IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSD 223 (299)
T ss_pred eeecCCccEEEEecc---cCEEEEEECCCCcE--EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCC
Confidence 455578888876665 67899999998884 3344322 0 1 12345565 555544544421
Q ss_pred -CCCCCCceeEEEEecCCCceEEeeecC-C-----CCCcCCeEECCCCCEEEEEEe
Q 004971 579 -DNPGSGSFEMYLIHPNGTGLRKLIQSG-S-----AGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 579 -~~~~~~~~~i~~~d~~~~~~~~l~~~~-~-----~~~~~~~~~SpDG~~l~~~~~ 627 (721)
.........++.+|..+.+.+.+.... + .....+....|+|..|+--+.
T Consensus 224 ~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~ 279 (299)
T PF14269_consen 224 FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN 279 (299)
T ss_pred CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC
Confidence 001124456777888765544333211 1 112234667778887665443
No 483
>PHA02713 hypothetical protein; Provisional
Probab=42.67 E-value=5.4e+02 Score=28.94 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=34.7
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC-CCeEEecc
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG-SDLKRLTQ 663 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~lt~ 663 (721)
..++.||..+.+-..+... ...........-+|+ |++.+...+.. .....+.+||+.+ .+.+.+..
T Consensus 432 ~~ve~YDP~td~W~~v~~m-~~~r~~~~~~~~~~~-IYv~GG~~~~~----------~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNF-WTGTIRPGVVSHKDD-IYVVCDIKDEK----------NVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ceEEEECCCCCeEeecCCC-CcccccCcEEEECCE-EEEEeCCCCCC----------ccceeEEEecCCCCCCeeEccc
Confidence 4689999988876655433 122222222333555 44444322110 0012378889887 67766654
No 484
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=42.65 E-value=4.4e+02 Score=27.97 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=25.9
Q ss_pred eeEEEEecCCCceEEee---ecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 586 FEMYLIHPNGTGLRKLI---QSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~---~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+.+...+.+++....++ .....+.+..+..-|||..|+.....+
T Consensus 342 w~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~ 388 (399)
T COG2133 342 WPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGD 388 (399)
T ss_pred eeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCC
Confidence 45666777766222111 111236778889999999777655433
No 485
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.20 E-value=53 Score=38.52 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+-++++.+. ..++...|..+ . +.++. ...+.+..++|+.||+.++.+..++ .|.+||+..++.
T Consensus 99 ~~~ivi~Ts---~ghvl~~d~~~-n---L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G-------~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 99 VVPIVIGTS---HGHVLLSDMTG-N---LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDG-------HVTVWDMHRAKI 164 (1206)
T ss_pred eeeEEEEcC---chhhhhhhhhc-c---cchhhcCCccCCcceeeEecCCCceeccccCCC-------cEEEEEccCCcc
Confidence 345666655 56676666653 3 23222 2345678999999999888777765 899999999876
Q ss_pred EEeeecCCCCC---cCCeEECCCCCEEEEEEecCC
Q 004971 599 RKLIQSGSAGR---ANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 599 ~~l~~~~~~~~---~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.++... +... +-...+..++. .+++++..|
T Consensus 165 l~~i~e-~~ap~t~vi~v~~t~~nS-~llt~D~~G 197 (1206)
T KOG2079|consen 165 LKVITE-HGAPVTGVIFVGRTSQNS-KLLTSDTGG 197 (1206)
T ss_pred eeeeee-cCCccceEEEEEEeCCCc-EEEEccCCC
Confidence 665543 2222 22334555555 344444444
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=42.04 E-value=2.6e+02 Score=29.39 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=33.5
Q ss_pred ceeEEEEECCCCcccceEE---CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 534 YKNLYIMDAEGGEGYGLHR---LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~---l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
+..|+.+|.+++.. .. +.........+.+..||+ |++...+. .+|.+|..+|+..
T Consensus 77 ~G~i~A~d~~~g~~---~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-------~~y~ld~~~G~~~ 134 (370)
T COG1520 77 DGNIFALNPDTGLV---KWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-------KLYALDASTGTLV 134 (370)
T ss_pred CCcEEEEeCCCCcE---EecccCcCcceeccCceEEeCCe-EEEecccc-------eEEEEECCCCcEE
Confidence 34788888888872 21 111012234455555887 66776653 8999999777654
No 487
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=40.98 E-value=4e+02 Score=31.25 Aligned_cols=170 Identities=15% Similarity=0.119 Sum_probs=80.2
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeC
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS 427 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~S 427 (721)
.|..+|+.+.++.+....... .+.+-....++.|+....+ .+.+.+..+-...-+.....+.-..|+
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~-----~v~imR~Nnr~lf~G~t~G--------~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSAS-----GVTIMRYNNRNLFCGDTRG--------TVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred heeeeecccceeeeeeeccCC-----ceEEEEecCcEEEeecccc--------eEEeecCCcCceeeeeeccccceeeee
Confidence 367788888776655533211 1233333334444433332 356666544321111111122223556
Q ss_pred cCCCEEEEEe----------CCcEEEEECCCCc-eEEEe-ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 428 PKGDRIAFVE----------FPGVYVVNSDGSN-RRQVY-FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 428 pDG~~la~~~----------~~~l~v~d~~~g~-~~~l~-~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
-.|..|+.++ +.=|.+||+..-+ ...|. ......+.|.|. -.++++++ ..+..++.+...
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S-------~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTS-------QSGQFQFVDTAT 297 (1118)
T ss_pred ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEe-------cccceeeccccc
Confidence 6688887773 2235677775422 11222 222334455554 33455544 234444444211
Q ss_pred cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
-+. .......+.........+.+|+.|..|+|... ...|-+|-
T Consensus 298 lsN-P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~---~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSN-PPAGVKMVNPNGSGISAFDISSNGDALAFGDH---EGHVNLWA 340 (1118)
T ss_pred cCC-CccceeEEccCCCcceeEEecCCCceEEEecc---cCcEeeec
Confidence 111 00011111112223667899999999999986 56666664
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=40.03 E-value=3.3e+02 Score=29.04 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=23.9
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCc
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSN 450 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~ 450 (721)
...+-..|||+++++.+..++.+++++...
T Consensus 223 v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~ 252 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTGSELVVALLDKRS 252 (733)
T ss_pred hHhhEECCCCCEEEEecCCeEEEEeecccc
Confidence 445678899999999888888888887653
No 489
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=39.33 E-value=3.2e+02 Score=30.03 Aligned_cols=138 Identities=18% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCCEEEEEEeeCC----ceeEEEEECCCCcccceEECcCC-----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 521 DGKWIVFRSTRTG----YKNLYIMDAEGGEGYGLHRLTEG-----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 521 Dg~~l~~~s~~~g----~~~l~~~d~~~g~~~~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
+.+.++|.....+ ..+||++|+.+... ......+ .......++. .+.++|+.... .......|+.+
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w--~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~-~~~~~~~l~~~ 144 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLW--TKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDK-KYRNLNELHSL 144 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCccc--ccccccCCCCCcccceeEEEEC--CeEEEEccccC-CCCChhheEec
Confidence 5666666654331 22599999886432 1111111 1111122332 33344444331 11234589999
Q ss_pred ecCCCceEEeeecCC--CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCC
Q 004971 592 HPNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669 (721)
Q Consensus 592 d~~~~~~~~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~ 669 (721)
|+.+++...+...+. .....+.+.. .|++|++-..-.... +...++|++|+.+.+..++...+. .-
T Consensus 145 d~~t~~W~~l~~~~~~P~~r~~Hs~~~-~g~~l~vfGG~~~~~----------~~~ndl~i~d~~~~~W~~~~~~g~-~P 212 (482)
T KOG0379|consen 145 DLSTRTWSLLSPTGDPPPPRAGHSATV-VGTKLVVFGGIGGTG----------DSLNDLHIYDLETSTWSELDTQGE-AP 212 (482)
T ss_pred cCCCCcEEEecCcCCCCCCcccceEEE-ECCEEEEECCccCcc----------cceeeeeeeccccccceecccCCC-CC
Confidence 999988766543221 1222333443 345555444322210 023479999999988877765332 22
Q ss_pred CceecC
Q 004971 670 TPAWGP 675 (721)
Q Consensus 670 ~~~~sp 675 (721)
.|.+.+
T Consensus 213 ~pR~gH 218 (482)
T KOG0379|consen 213 SPRYGH 218 (482)
T ss_pred CCCCCc
Confidence 355555
No 490
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=36.94 E-value=1.3e+02 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceeeEEccCCC---EEEEEEccCCCCCCceeEEEEecCC
Q 004971 560 DTMCNWSPDGE---WIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 560 ~~~~~~SpDG~---~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+..+.|||+.. .|+++...+ .+-++|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g-------~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQG-------RVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCC-------eEEEEEccc
Confidence 45688998544 666666654 899999874
No 491
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.78 E-value=7.6e+02 Score=29.01 Aligned_cols=148 Identities=9% Similarity=0.040 Sum_probs=71.8
Q ss_pred CCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--------CC-------c-CceeeEEccCCCEEEEEEccCCC---
Q 004971 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--------GP-------W-SDTMCNWSPDGEWIAFASDRDNP--- 581 (721)
Q Consensus 521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--------~~-------~-~~~~~~~SpDG~~l~~~~~~~~~--- 581 (721)
++++|++.+. +.+|+.+|.++|+. ...... +- . ....+... + ..|++.....+.
T Consensus 259 ~~~rV~~~T~---Dg~LiALDA~TGk~--~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~-g~VIvG~~v~d~~~~ 331 (764)
T TIGR03074 259 CARRIILPTS---DARLIALDADTGKL--CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-G-TTVVIGGRVADNYST 331 (764)
T ss_pred cCCEEEEecC---CCeEEEEECCCCCE--EEEecCCCceeeecccCcCCCcccccccCCEEE-C-CEEEEEecccccccc
Confidence 4567877766 77899999999984 221111 00 0 01123333 3 345555431100
Q ss_pred CCCceeEEEEecCCCceEEeeecC--------CC--------CCc-CCeEECCCCCEEEEEEecCCCcCCCCCC-CCCCC
Q 004971 582 GSGSFEMYLIHPNGTGLRKLIQSG--------SA--------GRA-NHPYFSPDGKSIVFTSDYGGISAEPIST-PHQYQ 643 (721)
Q Consensus 582 ~~~~~~i~~~d~~~~~~~~l~~~~--------~~--------~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~~-~~~~~ 643 (721)
......|+-+|+.+|+..=-.... .. ... ...++.|+...+++-............+ +....
T Consensus 332 ~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~ 411 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEK 411 (764)
T ss_pred cCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccc
Confidence 001246888999888754221110 00 011 2345666666666543322100000000 11111
Q ss_pred CCccEEEEEcCCCCeE---EeccCCCCCCCceecC
Q 004971 644 PYGEIFKIKLDGSDLK---RLTQNSFEDGTPAWGP 675 (721)
Q Consensus 644 ~~~~l~~~d~~~~~~~---~lt~~~~~~~~~~~sp 675 (721)
....|..+|+++|+.+ |.+.|...+.+....|
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p 446 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQP 446 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCc
Confidence 2457999999999865 5555666665544444
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.97 E-value=6.8 Score=41.31 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=86.9
Q ss_pred ceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971 424 PSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS 501 (721)
Q Consensus 424 ~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 501 (721)
..|-+.+..++... ..-+..||-.+.....+. ++...+++|..+|..+++.. ...+.+.||+++...
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlA------ek~~piylwd~n~ey----- 108 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLA------EKTGPIYLWDVNSEY----- 108 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhh------hcCCCeeechhhhhh-----
Confidence 46777777777663 444556665554433333 56777899999999888876 346778888887643
Q ss_pred ceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 502 AVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 502 ~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
..++..+. ....-..|++.+..++.... ..++.+++-.+.+. +..+..+.......+|.+.+..+.+...
T Consensus 109 -tqqLE~gg~~s~sll~wsKg~~el~ig~~---~gn~viynhgtsR~--iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 109 -TQQLESGGTSSKSLLAWSKGTPELVIGNN---AGNIVIYNHGTSRR--IIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred -HHHHhccCcchHHHHhhccCCcccccccc---ccceEEEeccchhh--hhhhcccccceeEEEecccceeeecCcH
Confidence 23444443 33445799999998888754 55677776654431 2223334445567888888776655443
No 493
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=35.71 E-value=4.2e+02 Score=25.74 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCcEEEEECCCCceEEE--e------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 429 KGDRIAFVEFPGVYVVNSDGSNRRQV--Y------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 429 DG~~la~~~~~~l~v~d~~~g~~~~l--~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
+|+..++...+.||.+|..+|....+ . .+....+.|.|--.+|=+++ ..-.-++++.+.+
T Consensus 38 ~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs---------~~GqNlR~npdtG--- 105 (236)
T PF14339_consen 38 NGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS---------NTGQNLRLNPDTG--- 105 (236)
T ss_pred CCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc---------cCCcEEEECCCCC---
Q ss_pred cceEEcc------------cCCCCCcceEEccC------CCEEEEEEeeCCceeEEEE-ECCCCcccceEECcCCCcCce
Q 004971 501 SAVRRLT------------TNGKNNAFPSVSPD------GKWIVFRSTRTGYKNLYIM-DAEGGEGYGLHRLTEGPWSDT 561 (721)
Q Consensus 501 ~~~~~l~------------~~~~~~~~~~~SpD------g~~l~~~s~~~g~~~l~~~-d~~~g~~~~~~~l~~~~~~~~ 561 (721)
...... .....+...++.-. ...|+-.... ...|++. ..+.|....+..|.-......
T Consensus 106 -av~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~--~~~Lv~Q~ppN~GtL~~vG~LGvd~~~~~ 182 (236)
T PF14339_consen 106 -AVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTT--LDALVTQNPPNDGTLNTVGPLGVDAAGDA 182 (236)
T ss_pred -CceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecC--CCeEEEecCCCCCcEEeeeccccccCccc
Q ss_pred eeEEcc--CCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 562 MCNWSP--DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 562 ~~~~Sp--DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
.+...+ .+...+|..... .+ ..||.+|+.+|+...+
T Consensus 183 gFDI~~~~~~~~~a~a~~~~---~~-~~LY~vdL~TG~at~~ 220 (236)
T PF14339_consen 183 GFDIAGDGNGGNAAYAVLGV---GG-SGLYTVDLTTGAATLV 220 (236)
T ss_pred ceeeecCCCcceEEEEEecC---CC-cEEEEEECCCcccEEe
No 494
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=34.51 E-value=29 Score=23.18 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=15.8
Q ss_pred CcchhhHHHHHHHHHhhhccccccCCCCCceE
Q 004971 1 MKLQTIFCSLLYLLSAVFRATADEDSSSRSSI 32 (721)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (721)
||+..++..+++.+++.+|++.-.-+..++++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~iRDvqGGtV 32 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYIRDVQGGTV 32 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcceecCCCceE
Confidence 78544444444444455566654444444443
No 495
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=34.05 E-value=67 Score=20.92 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=15.1
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCC
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKT 205 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~ 205 (721)
+|++++.+|++.+..+ +||.+++++
T Consensus 16 ~~~v~~g~vyv~~~dg----------~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG----------NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS----------EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC----------EEEEEeCCC
Confidence 5666788777765542 899998753
No 496
>PHA02790 Kelch-like protein; Provisional
Probab=33.84 E-value=6.7e+02 Score=27.50 Aligned_cols=182 Identities=10% Similarity=-0.023 Sum_probs=78.1
Q ss_pred cEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCcc
Q 004971 440 GVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAF 515 (721)
Q Consensus 440 ~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~ 515 (721)
.++.||..+++...+.. .........-+ ..|++..... ....+..| +.... ....+..... ....
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~-~~iYviGG~~----~~~sve~y--dp~~n----~W~~~~~l~~~r~~~ 356 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPAN-NKLYVVGGLP----NPTSVERW--FHGDA----AWVNMPSLLKPRCNP 356 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEEC-CEEEEECCcC----CCCceEEE--ECCCC----eEEECCCCCCCCccc
Confidence 47778887776555541 11111112223 4555543211 11234444 33322 3344443332 2222
Q ss_pred eEEccCCCEEEEEEeeC-CceeEEEEECCCCcccceEECcCCCcC-ceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 516 PSVSPDGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
....-+|+ |++..... ....+..||+.+.+ -..+...... ....+..-+| .|++.+. ...+||.
T Consensus 357 ~~~~~~g~-IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~r~~~~~~~~~~-~IYv~GG---------~~e~ydp 422 (480)
T PHA02790 357 AVASINNV-IYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYPHYKSCALVFGR-RLFLVGR---------NAEFYCE 422 (480)
T ss_pred EEEEECCE-EEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCccccceEEEECC-EEEEECC---------ceEEecC
Confidence 33334554 54443322 23457778888766 3333222111 0112223344 4555442 2456788
Q ss_pred CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 594 ~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
.+++-..+.... ......-.-.-+|+ |+..+...+.. ....+.+||..+.+..
T Consensus 423 ~~~~W~~~~~m~-~~r~~~~~~v~~~~-IYviGG~~~~~-----------~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 423 SSNTWTLIDDPI-YPRDNPELIIVDNK-LLLIGGFYRGS-----------YIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCCcEeEcCCCC-CCccccEEEEECCE-EEEECCcCCCc-----------ccceEEEEECCCCeEE
Confidence 777666554321 11222222233555 44444322110 0124788888776553
No 497
>smart00284 OLF Olfactomedin-like domains.
Probab=30.67 E-value=5.4e+02 Score=25.43 Aligned_cols=143 Identities=9% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---C--------CCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS---P--------KTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~---~--------~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
+| .++|.. .+ ...|..+|+.++.......+.. + +....+++....|=+++|+.....
T Consensus 83 ng-slYY~~--~~--s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~------- 150 (255)
T smart00284 83 NG-SLYFNK--FN--SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA------- 150 (255)
T ss_pred Cc-eEEEEe--cC--CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-------
Confidence 55 466632 22 2459999999887532221111 0 111234566666777777765554
Q ss_pred ceeEEEeccCCCCcce---ec--ccCCCCceeCcCCCEEEEE-e----CCc-EEEEECCCCceEEEe------ecCceee
Q 004971 400 NQLLLENIKSPLPDIS---LF--RFDGSFPSFSPKGDRIAFV-E----FPG-VYVVNSDGSNRRQVY------FKNAFST 462 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~---~~--~~~~~~~~~SpDG~~la~~-~----~~~-l~v~d~~~g~~~~l~------~~~~~~~ 462 (721)
..|.+..++...-.+. .. ......-+|--.|. |+.+ + ... -+.+|..+++...+. -+.+..+
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGv-LY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l 229 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYNKRSASNAFMICGI-LYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISML 229 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeE-EEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceec
Confidence 3455555543311111 11 11111123323342 2222 1 222 467888877644332 3466789
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
.+.|-.+.|+.- +++..-+|.+.+
T Consensus 230 ~YNP~d~~LY~w--------dng~~l~Y~v~f 253 (255)
T smart00284 230 DYNPNDRKLYAW--------NNGHLVHYDIAL 253 (255)
T ss_pred eeCCCCCeEEEE--------eCCeEEEEEEEe
Confidence 999999999886 356677776654
No 498
>PLN02153 epithiospecifier protein
Probab=29.34 E-value=6.5e+02 Score=25.95 Aligned_cols=123 Identities=9% Similarity=0.004 Sum_probs=57.1
Q ss_pred eeEEEEECCCCcccceEECcCCC----cCceeeEEccCCCEEEEEEccCC----C--CCCceeEEEEecCCCceEEeeec
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGP----WSDTMCNWSPDGEWIAFASDRDN----P--GSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~----~~~~~~~~SpDG~~l~~~~~~~~----~--~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
..++++|+.+.+ -..+.... ......+..-+++..++...... . ......+++||+.+.+-+++...
T Consensus 159 ~~v~~yd~~~~~---W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADGK---WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCCe---EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 368889998776 33333211 11111122335654444332100 0 00124799999998876665421
Q ss_pred C--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 605 G--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 605 ~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+ ........+..-+++.+++........ . ... .......+||++|+++...+.+..
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~-~-~~~-~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDL-K-GHL-GPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCcc-c-ccc-ccccccccEEEEEcCccEEEeccC
Confidence 1 111112222333555555544321000 0 000 000112369999999988887764
No 499
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=28.16 E-value=22 Score=20.29 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=6.5
Q ss_pred ccCCCCCc
Q 004971 73 GHFPSPSS 80 (721)
Q Consensus 73 ~~~spdG~ 80 (721)
..|||||+
T Consensus 6 t~FSp~Gr 13 (23)
T PF10584_consen 6 TTFSPDGR 13 (23)
T ss_dssp TSBBTTSS
T ss_pred eeECCCCe
Confidence 45899997
No 500
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=27.78 E-value=3.3e+02 Score=34.71 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=78.6
Q ss_pred CCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCce
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~ 561 (721)
.++.+++|...... .+.... .+...+....|+-.|........ ++.|-+|... .++ ...--.+.-...
T Consensus 2228 ~dgsv~~~~w~~~~-----~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~---dg~l~l~q~~-pk~--~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQ-----QVVCFRTAGNSRVTRSRFNHQGNKFGIVDG---DGDLSLWQAS-PKP--YTSWQCHNKALS 2296 (2439)
T ss_pred CCceEEEEeccCCC-----eEEEeeccCcchhhhhhhcccCCceeeecc---CCceeecccC-Ccc--eeccccCCcccc
Confidence 45666666665433 121111 12245667788888888776654 6677777665 121 222222333334
Q ss_pred eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
++.|-. ..++..... +....+-+||.--....-+....|.+....+++.|.-+.|+. ..+.|
T Consensus 2297 Df~Fi~--s~~~tag~s----~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis-ggr~G----------- 2358 (2439)
T KOG1064|consen 2297 DFRFIG--SLLATAGRS----SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS-GGRKG----------- 2358 (2439)
T ss_pred ceeeee--hhhhccccC----CCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe-cCCcC-----------
Confidence 555543 333333332 244578888863332222222237788889999998775554 44443
Q ss_pred CCCCccEEEEEcCCCCe
Q 004971 642 YQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~ 658 (721)
++++||+.-.++
T Consensus 2359 -----~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2359 -----EVCLFDIRQRQL 2370 (2439)
T ss_pred -----cEEEeehHHHHH
Confidence 599999854443
Done!