Query 004971
Match_columns 721
No_of_seqs 469 out of 4082
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k32_A Tricorn protease; prote 100.0 1E-33 3.4E-38 340.5 42.8 524 29-676 24-618 (1045)
2 2ymu_A WD-40 repeat protein; u 100.0 2E-31 6.9E-36 300.1 46.1 482 59-682 8-568 (577)
3 1k32_A Tricorn protease; prote 100.0 6.7E-31 2.3E-35 315.9 43.7 424 171-676 19-482 (1045)
4 1nr0_A Actin interacting prote 100.0 1.8E-29 6.2E-34 285.8 45.4 448 58-630 50-603 (611)
5 1nr0_A Actin interacting prote 100.0 1.3E-29 4.4E-34 287.0 39.5 424 171-677 68-593 (611)
6 2ymu_A WD-40 repeat protein; u 100.0 9.3E-28 3.2E-32 270.2 48.4 377 171-629 189-571 (577)
7 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.7E-27 1.3E-31 253.3 30.1 319 321-677 64-409 (415)
8 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-26 1.1E-30 281.4 39.1 476 60-676 608-1189(1249)
9 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-25 6.1E-30 274.7 41.0 470 60-676 692-1229(1249)
10 3pe7_A Oligogalacturonate lyas 99.9 4.8E-26 1.6E-30 242.6 30.1 310 311-657 22-386 (388)
11 4a5s_A Dipeptidyl peptidase 4 99.9 1.6E-24 5.5E-29 250.8 37.3 379 218-662 19-456 (740)
12 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-24 4.8E-29 252.0 36.0 362 218-664 39-468 (741)
13 3pe7_A Oligogalacturonate lyas 99.9 9.7E-25 3.3E-29 232.5 27.6 318 197-596 12-385 (388)
14 1pgu_A Actin interacting prote 99.9 5.8E-23 2E-27 232.6 43.7 451 59-655 55-614 (615)
15 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.7E-24 1.3E-28 229.8 30.1 260 331-619 142-409 (415)
16 2ecf_A Dipeptidyl peptidase IV 99.9 5.7E-24 1.9E-28 246.9 31.8 316 321-676 38-435 (741)
17 1xfd_A DIP, dipeptidyl aminope 99.9 8.9E-24 3E-28 244.5 33.2 326 271-630 21-432 (723)
18 4a5s_A Dipeptidyl peptidase 4 99.9 9.3E-24 3.2E-28 244.4 30.0 327 322-676 19-426 (740)
19 1pgu_A Actin interacting prote 99.9 1.8E-22 6.1E-27 228.6 40.0 416 171-678 27-597 (615)
20 1xfd_A DIP, dipeptidyl aminope 99.9 7.7E-24 2.6E-28 245.0 27.8 326 322-676 19-420 (723)
21 3c5m_A Oligogalacturonate lyas 99.9 4.5E-23 1.5E-27 220.0 31.1 311 311-663 22-392 (396)
22 3mkq_A Coatomer beta'-subunit; 99.9 2.8E-22 9.5E-27 235.2 36.1 450 60-676 6-479 (814)
23 1z68_A Fibroblast activation p 99.9 3.4E-23 1.2E-27 239.4 27.8 334 271-663 20-451 (719)
24 2oaj_A Protein SNI1; WD40 repe 99.9 8.4E-22 2.9E-26 231.5 38.0 464 63-663 13-673 (902)
25 3ow8_A WD repeat-containing pr 99.9 4.9E-22 1.7E-26 205.6 30.5 274 316-629 29-312 (321)
26 2z3z_A Dipeptidyl aminopeptida 99.9 7.3E-22 2.5E-26 227.8 35.3 293 321-663 83-443 (706)
27 3mkq_A Coatomer beta'-subunit; 99.9 7.3E-22 2.5E-26 231.6 32.2 415 59-628 47-489 (814)
28 1gxr_A ESG1, transducin-like e 99.9 1.7E-21 6E-26 202.4 31.0 304 271-629 14-328 (337)
29 2ojh_A Uncharacterized protein 99.9 5.1E-21 1.7E-25 194.6 32.9 262 343-630 18-294 (297)
30 2oaj_A Protein SNI1; WD40 repe 99.9 2.3E-21 7.8E-26 227.8 34.1 433 171-684 26-651 (902)
31 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-20 4.9E-25 217.0 39.2 318 176-598 35-438 (706)
32 1z68_A Fibroblast activation p 99.9 5E-22 1.7E-26 229.6 25.8 320 323-676 19-420 (719)
33 3c5m_A Oligogalacturonate lyas 99.9 2E-21 6.9E-26 207.1 28.3 313 171-546 44-386 (396)
34 1gxr_A ESG1, transducin-like e 99.9 4.3E-21 1.5E-25 199.4 28.8 313 219-593 13-335 (337)
35 1got_B GT-beta; complex (GTP-b 99.9 1.1E-20 3.6E-25 197.4 30.0 275 313-630 49-335 (340)
36 3o4h_A Acylamino-acid-releasin 99.9 1.3E-21 4.4E-26 220.2 23.8 285 321-661 23-320 (582)
37 1r5m_A SIR4-interacting protei 99.9 1.3E-20 4.3E-25 202.7 30.4 319 271-655 50-425 (425)
38 3u4y_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 188.8 33.3 292 325-664 3-313 (331)
39 3iz6_a 40S ribosomal protein R 99.9 4.8E-20 1.6E-24 195.6 31.0 288 313-657 60-377 (380)
40 3ow8_A WD repeat-containing pr 99.9 2.6E-20 8.8E-25 192.7 27.9 272 272-593 38-319 (321)
41 1vyh_C Platelet-activating fac 99.9 1.5E-20 5E-25 201.7 27.0 274 314-629 103-402 (410)
42 2pm9_A Protein WEB1, protein t 99.9 2.5E-21 8.5E-26 207.9 20.4 315 270-629 16-405 (416)
43 2pbi_B Guanine nucleotide-bind 99.9 4.3E-20 1.5E-24 193.8 28.9 276 312-629 57-348 (354)
44 4g56_B MGC81050 protein; prote 99.9 2.1E-20 7.2E-25 196.4 25.7 292 317-661 40-350 (357)
45 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.1E-19 3.8E-24 190.1 30.1 293 313-657 9-337 (345)
46 3zwl_B Eukaryotic translation 99.9 8.2E-20 2.8E-24 192.2 28.3 294 311-656 24-347 (369)
47 1r5m_A SIR4-interacting protei 99.9 7.4E-20 2.5E-24 196.6 27.9 315 216-595 46-425 (425)
48 2ojh_A Uncharacterized protein 99.9 1.3E-19 4.6E-24 184.0 27.8 252 400-676 22-282 (297)
49 2ynn_A Coatomer subunit beta'; 99.9 2E-19 6.9E-24 184.5 28.1 273 315-629 9-293 (304)
50 3frx_A Guanine nucleotide-bind 99.9 1.7E-19 6E-24 186.3 27.2 285 314-656 12-318 (319)
51 2pm9_A Protein WEB1, protein t 99.8 5.8E-20 2E-24 197.2 23.6 289 321-657 14-339 (416)
52 4h5i_A Guanine nucleotide-exch 99.8 2.8E-19 9.4E-24 188.5 27.9 296 318-655 13-343 (365)
53 3vl1_A 26S proteasome regulato 99.8 2.3E-19 7.9E-24 192.9 27.8 335 171-595 65-419 (420)
54 1erj_A Transcriptional repress 99.8 4.9E-19 1.7E-23 188.7 29.7 273 318-629 63-380 (393)
55 4gqb_B Methylosome protein 50; 99.8 3.9E-19 1.3E-23 185.4 27.0 285 320-656 31-332 (344)
56 4ery_A WD repeat-containing pr 99.8 8.2E-19 2.8E-23 180.6 29.1 272 314-627 18-299 (312)
57 3bws_A Protein LP49; two-domai 99.8 1.4E-18 4.8E-23 187.6 30.3 325 221-595 69-432 (433)
58 3bws_A Protein LP49; two-domai 99.8 1E-18 3.5E-23 188.8 28.6 291 321-655 124-432 (433)
59 4gqb_B Methylosome protein 50; 99.8 3.4E-19 1.2E-23 185.9 23.6 270 369-684 30-321 (344)
60 1l0q_A Surface layer protein; 99.8 2.2E-18 7.5E-23 183.4 30.3 266 345-660 10-280 (391)
61 3vl1_A 26S proteasome regulato 99.8 2.3E-19 7.9E-24 192.9 22.3 304 271-629 61-410 (420)
62 2gop_A Trilobed protease; beta 99.8 3.1E-18 1.1E-22 179.0 29.9 281 323-665 18-340 (347)
63 2bkl_A Prolyl endopeptidase; m 99.8 5.8E-18 2E-22 194.3 34.0 304 326-665 74-407 (695)
64 4h5i_A Guanine nucleotide-exch 99.8 4.4E-18 1.5E-22 179.2 30.3 297 272-596 20-344 (365)
65 2xzm_R RACK1; ribosome, transl 99.8 1.2E-18 4.2E-23 182.0 25.7 286 314-656 16-341 (343)
66 4e54_B DNA damage-binding prot 99.8 5.1E-19 1.7E-23 191.4 23.5 297 318-659 118-434 (435)
67 1got_B GT-beta; complex (GTP-b 99.8 1.6E-18 5.3E-23 180.9 26.2 271 271-592 60-340 (340)
68 4g56_B MGC81050 protein; prote 99.8 3.9E-19 1.3E-23 186.8 21.5 287 349-684 28-333 (357)
69 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5.2E-23 195.2 27.4 283 218-601 24-320 (582)
70 1l0q_A Surface layer protein; 99.8 3.1E-17 1.1E-21 174.4 36.0 269 288-603 10-283 (391)
71 3fm0_A Protein CIAO1; WDR39,SG 99.8 3.5E-18 1.2E-22 178.6 28.0 287 271-597 21-337 (345)
72 3azo_A Aminopeptidase; POP fam 99.8 6E-18 2E-22 193.5 32.4 298 271-603 28-377 (662)
73 3vgz_A Uncharacterized protein 99.8 1.8E-17 6.3E-22 173.3 33.5 270 321-629 42-335 (353)
74 1k8k_C P40, ARP2/3 complex 41 99.8 1.5E-18 5.2E-23 182.9 24.9 287 318-656 7-362 (372)
75 3azo_A Aminopeptidase; POP fam 99.8 2.8E-18 9.5E-23 196.2 28.9 305 318-665 22-379 (662)
76 3zwl_B Eukaryotic translation 99.8 1.5E-17 5.1E-22 174.8 32.2 281 271-597 37-348 (369)
77 1vyh_C Platelet-activating fac 99.8 2.1E-18 7.2E-23 184.8 25.9 267 366-683 105-400 (410)
78 2xdw_A Prolyl endopeptidase; a 99.8 1.2E-17 4.1E-22 192.2 33.9 304 328-663 80-424 (710)
79 2ynn_A Coatomer subunit beta'; 99.8 3E-18 1E-22 175.7 25.2 260 367-676 11-281 (304)
80 3ei3_B DNA damage-binding prot 99.8 2.8E-18 9.7E-23 182.0 25.7 294 313-655 67-382 (383)
81 4aez_A CDC20, WD repeat-contai 99.8 2.3E-17 8E-22 176.2 32.8 277 327-658 99-383 (401)
82 1erj_A Transcriptional repress 99.8 1.4E-17 4.8E-22 177.4 30.5 239 321-595 125-389 (393)
83 4aow_A Guanine nucleotide-bind 99.8 4.6E-18 1.6E-22 176.9 26.0 287 315-657 34-339 (340)
84 2pbi_B Guanine nucleotide-bind 99.8 9.9E-18 3.4E-22 175.8 27.5 269 365-683 60-346 (354)
85 4gga_A P55CDC, cell division c 99.8 2.1E-17 7.3E-22 177.7 30.6 287 319-656 105-396 (420)
86 2hes_X YDR267CP; beta-propelle 99.8 1.7E-17 5.8E-22 172.3 28.3 288 313-655 8-328 (330)
87 2xzm_R RACK1; ribosome, transl 99.8 1.5E-17 5.2E-22 173.6 28.0 277 275-596 35-341 (343)
88 1ri6_A Putative isomerase YBHE 99.8 3.5E-17 1.2E-21 170.3 29.8 295 289-618 14-333 (343)
89 3hfq_A Uncharacterized protein 99.8 9.7E-17 3.3E-21 167.7 33.2 275 347-663 18-327 (347)
90 1sq9_A Antiviral protein SKI8; 99.8 4.9E-18 1.7E-22 181.0 23.5 288 314-657 11-397 (397)
91 3hfq_A Uncharacterized protein 99.8 3.5E-17 1.2E-21 171.1 29.4 254 320-602 40-326 (347)
92 3iz6_a 40S ribosomal protein R 99.8 4.3E-17 1.5E-21 172.8 30.4 301 210-597 61-377 (380)
93 3dw8_B Serine/threonine-protei 99.8 1.1E-17 3.8E-22 181.3 26.3 274 320-629 29-438 (447)
94 4ery_A WD repeat-containing pr 99.8 2.8E-17 9.7E-22 169.0 27.8 274 271-594 28-311 (312)
95 3frx_A Guanine nucleotide-bind 99.8 2E-17 6.9E-22 170.8 26.7 276 272-596 23-318 (319)
96 2xdw_A Prolyl endopeptidase; a 99.8 7.9E-17 2.7E-21 185.4 33.6 305 275-603 80-424 (710)
97 1pby_B Quinohemoprotein amine 99.8 5.3E-17 1.8E-21 168.5 29.1 263 347-662 11-318 (337)
98 3u4y_A Uncharacterized protein 99.8 9.4E-17 3.2E-21 166.5 30.0 247 324-601 44-310 (331)
99 1nir_A Nitrite reductase; hemo 99.8 1.2E-16 4.3E-21 176.7 32.7 354 222-624 144-536 (543)
100 3dm0_A Maltose-binding peripla 99.8 4.2E-17 1.4E-21 187.3 29.7 283 314-654 377-692 (694)
101 3i2n_A WD repeat-containing pr 99.8 2.8E-17 9.7E-22 172.0 25.3 289 317-656 16-354 (357)
102 3scy_A Hypothetical bacterial 99.8 1.4E-16 4.6E-21 167.6 30.5 297 334-663 14-347 (361)
103 1nir_A Nitrite reductase; hemo 99.8 1.9E-16 6.5E-21 175.2 32.8 335 273-662 144-521 (543)
104 4ggc_A P55CDC, cell division c 99.8 2E-16 6.8E-21 162.7 30.7 284 321-655 27-315 (318)
105 3odt_A Protein DOA1; ubiquitin 99.8 1.7E-16 5.7E-21 162.8 30.0 279 312-659 11-300 (313)
106 1ri6_A Putative isomerase YBHE 99.8 2.8E-16 9.4E-21 163.5 30.8 279 346-663 14-318 (343)
107 2j04_A TAU60, YPL007P, hypothe 99.8 1.9E-17 6.5E-22 177.4 21.1 256 320-629 16-289 (588)
108 2gop_A Trilobed protease; beta 99.8 3.4E-17 1.2E-21 171.1 22.3 263 372-680 17-315 (347)
109 1yr2_A Prolyl oligopeptidase; 99.8 3.2E-16 1.1E-20 181.1 32.0 303 327-663 114-449 (741)
110 3vgz_A Uncharacterized protein 99.8 3.6E-16 1.2E-20 163.5 29.4 264 371-676 42-324 (353)
111 3dwl_C Actin-related protein 2 99.8 4.8E-18 1.6E-22 179.8 15.1 241 320-594 12-280 (377)
112 2aq5_A Coronin-1A; WD40 repeat 99.8 8.1E-17 2.8E-21 172.1 24.4 290 322-662 37-349 (402)
113 3k26_A Polycomb protein EED; W 99.8 6.8E-17 2.3E-21 169.6 23.3 288 317-654 16-365 (366)
114 3iuj_A Prolyl endopeptidase; h 99.8 7.9E-16 2.7E-20 176.1 33.8 303 327-664 84-414 (693)
115 4e54_B DNA damage-binding prot 99.7 5.2E-17 1.8E-21 175.5 22.3 285 271-600 124-435 (435)
116 2bkl_A Prolyl endopeptidase; m 99.7 1.1E-15 3.8E-20 175.4 34.6 304 273-603 74-405 (695)
117 3scy_A Hypothetical bacterial 99.7 1E-15 3.4E-20 161.0 30.9 279 289-602 26-346 (361)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.7 4.9E-16 1.7E-20 168.7 28.8 247 371-662 104-399 (450)
119 3i2n_A WD repeat-containing pr 99.7 2.1E-16 7.3E-21 165.3 25.0 285 271-597 23-355 (357)
120 1yr2_A Prolyl oligopeptidase; 99.7 7.2E-16 2.5E-20 178.2 31.5 300 275-602 115-448 (741)
121 2j04_B YDR362CP, TAU91; beta p 99.7 4.1E-17 1.4E-21 179.1 19.7 314 275-656 170-518 (524)
122 4aez_A CDC20, WD repeat-contai 99.7 1.2E-15 4.1E-20 162.9 30.2 279 272-600 99-385 (401)
123 3iuj_A Prolyl endopeptidase; h 99.7 1.2E-15 4E-20 174.7 31.9 264 321-603 130-413 (693)
124 3v7d_B Cell division control p 99.7 2E-15 6.9E-20 164.4 31.2 296 276-630 130-454 (464)
125 1pby_B Quinohemoprotein amine 99.7 1.8E-15 6.3E-20 156.8 29.4 252 321-603 35-318 (337)
126 3ei3_B DNA damage-binding prot 99.7 2.4E-16 8.3E-21 167.1 23.1 277 271-595 78-382 (383)
127 2j04_B YDR362CP, TAU91; beta p 99.7 3.4E-17 1.2E-21 179.8 16.9 281 344-676 180-494 (524)
128 1k8k_C P40, ARP2/3 complex 41 99.7 2.8E-16 9.5E-21 165.5 23.0 239 368-655 7-274 (372)
129 1sq9_A Antiviral protein SKI8; 99.7 8.2E-16 2.8E-20 163.7 26.6 279 272-597 22-397 (397)
130 3mmy_A MRNA export factor; mRN 99.7 2.4E-16 8.2E-21 165.5 22.0 279 313-630 33-338 (368)
131 3v7d_B Cell division control p 99.7 2E-15 6.8E-20 164.5 29.4 292 326-681 127-449 (464)
132 3dm0_A Maltose-binding peripla 99.7 1E-15 3.5E-20 175.8 28.1 275 271-594 387-692 (694)
133 3dw8_B Serine/threonine-protei 99.7 1.1E-15 3.9E-20 165.3 25.7 279 271-593 33-444 (447)
134 4gga_A P55CDC, cell division c 99.7 1.7E-15 5.9E-20 162.7 26.9 273 272-597 111-397 (420)
135 1yfq_A Cell cycle arrest prote 99.7 4E-16 1.4E-20 162.3 21.3 271 317-630 9-315 (342)
136 3dwl_C Actin-related protein 2 99.7 1.1E-16 3.6E-21 169.4 16.9 228 369-626 11-270 (377)
137 2pm7_B Protein transport prote 99.7 1.6E-15 5.6E-20 154.6 25.2 236 366-630 6-277 (297)
138 4a11_B DNA excision repair pro 99.7 2E-15 6.8E-20 161.0 26.9 294 312-659 36-369 (408)
139 2hes_X YDR267CP; beta-propelle 99.7 2.6E-15 8.8E-20 155.7 26.9 273 365-684 10-318 (330)
140 3jrp_A Fusion protein of prote 99.7 9.5E-16 3.3E-20 161.7 23.0 244 366-655 8-287 (379)
141 2j04_A TAU60, YPL007P, hypothe 99.7 2.7E-16 9.3E-21 168.5 17.9 243 369-676 15-278 (588)
142 2aq5_A Coronin-1A; WD40 repeat 99.7 2.4E-15 8.2E-20 160.6 25.0 259 374-677 39-325 (402)
143 4aow_A Guanine nucleotide-bind 99.7 1.1E-14 3.7E-19 151.2 28.0 283 349-683 18-326 (340)
144 3s25_A Hypothetical 7-bladed b 99.7 1.4E-14 4.9E-19 146.3 27.7 272 326-663 20-301 (302)
145 3bg1_A Protein SEC13 homolog; 99.7 1.3E-15 4.3E-20 157.0 20.4 241 317-630 11-285 (316)
146 2pm7_B Protein transport prote 99.7 5.2E-15 1.8E-19 150.9 24.9 246 316-594 6-284 (297)
147 4ggc_A P55CDC, cell division c 99.7 1.1E-14 3.7E-19 149.7 27.2 273 272-596 31-316 (318)
148 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.6E-14 8.8E-19 150.4 30.6 277 349-660 16-346 (365)
149 3k26_A Polycomb protein EED; W 99.7 2.2E-15 7.4E-20 158.1 21.8 276 272-594 24-365 (366)
150 3jrp_A Fusion protein of prote 99.7 3.4E-15 1.2E-19 157.4 22.9 249 316-597 8-289 (379)
151 1jmx_B Amine dehydrogenase; ox 99.7 3E-14 1E-18 148.5 28.9 278 324-662 4-333 (349)
152 2vdu_B TRNA (guanine-N(7)-)-me 99.7 6.1E-15 2.1E-19 160.0 24.2 217 421-676 105-365 (450)
153 2xe4_A Oligopeptidase B; hydro 99.7 8.2E-14 2.8E-18 160.4 33.9 298 329-663 124-466 (751)
154 3vu4_A KMHSV2; beta-propeller 99.7 1.4E-14 4.9E-19 151.7 24.6 273 316-629 16-327 (355)
155 3f3f_A Nucleoporin SEH1; struc 99.7 2.2E-14 7.5E-19 148.9 25.8 248 366-657 8-339 (351)
156 3odt_A Protein DOA1; ubiquitin 99.6 1.1E-14 3.9E-19 149.0 23.0 271 272-599 24-300 (313)
157 1yfq_A Cell cycle arrest prote 99.6 1.5E-14 5.3E-19 150.2 22.7 267 271-579 16-314 (342)
158 2ovr_B FBW7, F-BOX/WD repeat p 99.6 8.3E-14 2.8E-18 150.8 29.3 308 273-655 124-442 (445)
159 4a11_B DNA excision repair pro 99.6 2.8E-14 9.7E-19 152.0 24.3 279 271-600 48-370 (408)
160 2ovr_B FBW7, F-BOX/WD repeat p 99.6 1.5E-13 5E-18 148.8 29.4 306 222-595 124-442 (445)
161 3gre_A Serine/threonine-protei 99.6 6E-15 2.1E-19 159.3 18.2 246 317-601 61-365 (437)
162 3gre_A Serine/threonine-protei 99.6 3E-15 1E-19 161.7 15.5 275 324-664 32-369 (437)
163 3mmy_A MRNA export factor; mRN 99.6 3.7E-14 1.3E-18 148.7 23.5 267 271-579 44-337 (368)
164 3f3f_A Nucleoporin SEH1; struc 99.6 3.5E-14 1.2E-18 147.4 22.6 251 315-600 7-342 (351)
165 2oiz_A Aromatic amine dehydrog 99.6 4.1E-13 1.4E-17 140.7 30.4 308 331-676 14-358 (361)
166 1jmx_B Amine dehydrogenase; ox 99.6 2.4E-13 8.1E-18 141.6 28.3 287 272-603 5-333 (349)
167 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.6E-13 8.8E-18 142.7 27.9 234 421-675 42-316 (365)
168 3lrv_A PRE-mRNA-splicing facto 99.6 5E-14 1.7E-18 146.8 21.8 261 326-630 43-325 (343)
169 3jro_A Fusion protein of prote 99.6 2.4E-14 8.2E-19 165.6 20.5 249 316-656 6-286 (753)
170 2oiz_A Aromatic amine dehydrog 99.6 6.8E-13 2.3E-17 139.0 29.3 265 324-620 54-360 (361)
171 3s25_A Hypothetical 7-bladed b 99.6 1.1E-13 3.8E-18 139.8 21.7 230 375-664 19-264 (302)
172 2xyi_A Probable histone-bindin 99.6 4.3E-13 1.5E-17 144.4 26.7 244 367-656 126-411 (430)
173 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.7E-16 130.0 35.6 294 327-661 28-356 (373)
174 1p22_A F-BOX/WD-repeat protein 99.6 4.8E-13 1.7E-17 144.3 25.2 262 326-658 138-417 (435)
175 3sjl_D Methylamine dehydrogena 99.6 1.4E-11 4.6E-16 127.5 34.3 309 326-677 39-385 (386)
176 3bg1_A Protein SEC13 homolog; 99.5 9.9E-14 3.4E-18 142.7 17.9 238 271-543 18-292 (316)
177 3vu4_A KMHSV2; beta-propeller 99.5 3.3E-13 1.1E-17 141.2 22.0 237 366-656 16-272 (355)
178 1qks_A Cytochrome CD1 nitrite 99.5 8.2E-12 2.8E-16 137.7 33.4 357 221-624 159-560 (567)
179 2xyi_A Probable histone-bindin 99.5 4.5E-13 1.5E-17 144.3 22.6 248 316-596 125-411 (430)
180 2xe4_A Oligopeptidase B; hydro 99.5 2.8E-12 9.6E-17 147.6 28.9 261 321-603 175-466 (751)
181 3c75_H MADH, methylamine dehyd 99.5 2.5E-11 8.5E-16 127.9 31.5 287 331-661 83-409 (426)
182 3jro_A Fusion protein of prote 99.5 6.4E-13 2.2E-17 153.6 21.1 225 421-682 12-273 (753)
183 2mad_H Methylamine dehydrogena 99.5 4.6E-11 1.6E-15 125.2 33.3 252 319-601 66-356 (373)
184 3lrv_A PRE-mRNA-splicing facto 99.5 2.5E-12 8.4E-17 133.9 23.3 216 375-627 42-280 (343)
185 4gq1_A NUP37; propeller, trans 99.5 1.6E-13 5.5E-18 145.8 13.6 249 324-629 94-381 (393)
186 3s94_A LRP-6, low-density lipo 99.5 2.8E-09 9.7E-14 118.9 48.2 404 171-662 48-517 (619)
187 1qks_A Cytochrome CD1 nitrite 99.5 1.2E-10 4E-15 128.5 36.1 300 319-661 196-544 (567)
188 3e5z_A Putative gluconolactona 99.4 1.5E-11 5.3E-16 124.9 23.8 244 371-660 29-291 (296)
189 3g4e_A Regucalcin; six bladed 99.4 2.2E-11 7.6E-16 123.8 24.1 235 372-631 15-265 (297)
190 2w18_A PALB2, fancn, partner a 99.4 8.1E-11 2.8E-15 118.5 27.4 254 348-630 64-349 (356)
191 4gq1_A NUP37; propeller, trans 99.4 6.1E-11 2.1E-15 125.8 27.7 272 220-594 94-388 (393)
192 3s94_A LRP-6, low-density lipo 99.4 5.1E-08 1.8E-12 108.7 52.4 409 175-663 94-559 (619)
193 1p22_A F-BOX/WD-repeat protein 99.4 4.1E-11 1.4E-15 129.1 26.1 253 376-684 138-404 (435)
194 4a0p_A LRP6, LRP-6, low-densit 99.4 3.2E-08 1.1E-12 110.5 48.7 413 171-663 45-516 (628)
195 2w18_A PALB2, fancn, partner a 99.4 2.8E-11 9.7E-16 121.8 21.5 219 321-593 113-355 (356)
196 3sjl_D Methylamine dehydrogena 99.4 4.3E-10 1.5E-14 116.3 30.3 253 325-618 83-384 (386)
197 3c75_H MADH, methylamine dehyd 99.4 2.4E-10 8.1E-15 120.4 28.5 261 324-618 122-423 (426)
198 4a0p_A LRP6, LRP-6, low-densit 99.4 1.4E-07 4.8E-12 105.3 51.3 400 175-663 90-558 (628)
199 3e5z_A Putative gluconolactona 99.3 5.5E-10 1.9E-14 113.3 27.5 244 311-599 19-290 (296)
200 2dg1_A DRP35, lactonase; beta 99.3 2.4E-10 8.1E-15 118.1 25.1 248 369-655 44-316 (333)
201 3dsm_A Uncharacterized protein 99.3 7.5E-10 2.6E-14 114.2 26.8 272 344-663 14-310 (328)
202 1mda_H Methylamine dehydrogena 99.3 2E-10 6.8E-15 119.1 22.3 285 348-673 47-364 (368)
203 3dr2_A Exported gluconolactona 99.3 5.4E-10 1.8E-14 114.0 23.8 232 370-628 45-297 (305)
204 2ghs_A AGR_C_1268P; regucalcin 99.3 8.5E-10 2.9E-14 113.7 25.0 229 373-630 52-294 (326)
205 2dg1_A DRP35, lactonase; beta 99.2 2.8E-09 9.6E-14 110.0 26.5 245 321-595 46-316 (333)
206 1mda_H Methylamine dehydrogena 99.2 6.2E-10 2.1E-14 115.4 20.8 255 324-616 69-365 (368)
207 2ece_A 462AA long hypothetical 99.2 1.8E-08 6.2E-13 104.7 29.6 275 331-626 24-399 (462)
208 3dr2_A Exported gluconolactona 99.2 5.1E-09 1.7E-13 106.7 24.0 243 311-593 36-304 (305)
209 1npe_A Nidogen, entactin; glyc 99.2 8.8E-09 3E-13 102.7 25.2 252 332-620 1-263 (267)
210 2oit_A Nucleoporin 214KDA; NH2 99.1 9E-10 3.1E-14 118.2 18.2 209 421-656 39-279 (434)
211 1npe_A Nidogen, entactin; glyc 99.1 4.1E-08 1.4E-12 97.7 29.2 215 422-677 39-262 (267)
212 2ghs_A AGR_C_1268P; regucalcin 99.1 4.8E-09 1.7E-13 108.0 22.6 211 422-676 52-282 (326)
213 3dsm_A Uncharacterized protein 99.1 1.3E-08 4.5E-13 104.8 25.7 240 331-601 52-307 (328)
214 3g4e_A Regucalcin; six bladed 99.1 8.8E-09 3E-13 104.5 22.9 226 321-579 14-263 (297)
215 3hrp_A Uncharacterized protein 99.0 4.5E-08 1.5E-12 103.9 26.0 230 322-593 133-408 (409)
216 1fwx_A Nitrous oxide reductase 99.0 3.7E-09 1.3E-13 113.8 16.6 138 512-663 278-439 (595)
217 1fwx_A Nitrous oxide reductase 99.0 3.8E-09 1.3E-13 113.7 16.6 270 321-620 135-456 (595)
218 3hrp_A Uncharacterized protein 99.0 8.4E-08 2.9E-12 101.8 25.4 204 422-664 134-363 (409)
219 3fvz_A Peptidyl-glycine alpha- 99.0 1.1E-07 3.7E-12 97.9 24.8 200 422-656 94-323 (329)
220 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.4E-08 1.5E-12 99.8 21.6 200 422-655 74-299 (314)
221 2oit_A Nucleoporin 214KDA; NH2 99.0 3.6E-08 1.2E-12 105.6 21.4 158 421-596 95-279 (434)
222 2ece_A 462AA long hypothetical 99.0 4E-07 1.4E-11 94.7 27.8 236 326-576 88-399 (462)
223 1rwi_B Serine/threonine-protei 98.9 1.4E-07 4.6E-12 93.9 23.9 234 371-657 25-266 (270)
224 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 2.4E-07 8.1E-12 94.3 25.5 246 321-595 19-299 (314)
225 2z2n_A Virginiamycin B lyase; 98.9 7.2E-07 2.5E-11 89.8 26.5 273 321-657 16-297 (299)
226 1q7f_A NHL, brain tumor CG1071 98.9 3.5E-07 1.2E-11 91.8 23.6 177 423-626 81-268 (286)
227 3fvz_A Peptidyl-glycine alpha- 98.9 1.5E-07 5.3E-12 96.8 21.1 241 321-595 25-322 (329)
228 3v65_B Low-density lipoprotein 98.8 8E-07 2.7E-11 93.4 25.9 201 422-663 119-327 (386)
229 1ijq_A LDL receptor, low-densi 98.8 8.5E-07 2.9E-11 90.5 25.2 197 432-663 3-203 (316)
230 3v64_C Agrin; beta propeller, 98.8 1.4E-06 4.6E-11 90.3 26.9 201 422-663 76-284 (349)
231 1ijq_A LDL receptor, low-densi 98.8 4.1E-06 1.4E-10 85.3 29.9 218 349-598 12-241 (316)
232 1q7f_A NHL, brain tumor CG1071 98.8 4E-07 1.4E-11 91.4 21.8 214 422-676 33-261 (286)
233 3v65_B Low-density lipoprotein 98.8 4.3E-07 1.5E-11 95.5 22.7 194 431-663 88-285 (386)
234 3v64_C Agrin; beta propeller, 98.8 7E-07 2.4E-11 92.4 24.0 193 431-662 45-241 (349)
235 2qc5_A Streptogramin B lactona 98.8 3.5E-06 1.2E-10 84.8 27.5 261 321-627 21-290 (300)
236 1rwi_B Serine/threonine-protei 98.8 5.6E-07 1.9E-11 89.3 20.5 210 421-676 26-244 (270)
237 2iwa_A Glutamine cyclotransfer 98.7 8.8E-07 3E-11 86.6 19.9 191 423-656 25-238 (266)
238 3sov_A LRP-6, low-density lipo 98.7 2E-06 7E-11 87.5 23.1 195 432-663 6-205 (318)
239 3no2_A Uncharacterized protein 98.7 3.3E-06 1.1E-10 84.2 24.2 209 421-663 39-261 (276)
240 3p5b_L Low density lipoprotein 98.7 2.4E-06 8.2E-11 90.1 24.2 198 431-663 84-285 (400)
241 3sov_A LRP-6, low-density lipo 98.6 9.8E-06 3.4E-10 82.4 26.1 226 334-600 6-243 (318)
242 2qe8_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 92.8 17.4 262 321-626 18-309 (343)
243 3p5b_L Low density lipoprotein 98.6 9.4E-06 3.2E-10 85.6 26.1 203 422-663 115-329 (400)
244 2z2n_A Virginiamycin B lyase; 98.6 1.4E-05 4.8E-10 80.2 25.1 234 371-661 16-260 (299)
245 3m0c_C LDL receptor, low-densi 98.6 2.2E-05 7.4E-10 89.5 28.2 221 348-601 405-638 (791)
246 3m0c_C LDL receptor, low-densi 98.5 1.3E-05 4.5E-10 91.3 25.1 197 432-663 397-597 (791)
247 2qc5_A Streptogramin B lactona 98.5 8.9E-05 3.1E-09 74.3 27.3 194 422-661 65-265 (300)
248 3no2_A Uncharacterized protein 98.5 1.1E-05 3.8E-10 80.3 20.1 187 430-663 5-204 (276)
249 2p4o_A Hypothetical protein; p 98.4 3.4E-05 1.2E-09 78.1 23.8 225 372-628 34-278 (306)
250 2qe8_A Uncharacterized protein 98.4 2.1E-05 7.1E-10 81.2 22.5 260 271-577 21-309 (343)
251 4a2l_A BT_4663, two-component 98.4 0.0065 2.2E-07 70.2 45.9 273 322-663 265-579 (795)
252 1n7d_A LDL receptor, low-densi 98.4 2.9E-06 9.9E-11 96.2 16.4 220 348-602 387-621 (699)
253 2fp8_A Strictosidine synthase; 98.4 3.8E-05 1.3E-09 78.4 23.2 210 423-661 84-319 (322)
254 2p4o_A Hypothetical protein; p 98.4 1.2E-05 4.1E-10 81.5 19.1 209 422-674 35-263 (306)
255 1n7d_A LDL receptor, low-densi 98.4 2.6E-06 8.7E-11 96.6 15.0 200 421-659 408-618 (699)
256 3nol_A Glutamine cyclotransfer 98.3 2.4E-05 8.1E-10 75.5 17.1 177 424-629 48-246 (262)
257 2fp8_A Strictosidine synthase; 98.3 7E-05 2.4E-09 76.4 21.5 210 421-663 21-277 (322)
258 1kb0_A Quinohemoprotein alcoho 98.3 0.001 3.6E-08 75.0 32.4 82 535-626 457-538 (677)
259 3tc9_A Hypothetical hydrolase; 98.3 0.00016 5.6E-09 76.8 24.4 152 323-493 140-300 (430)
260 2iwa_A Glutamine cyclotransfer 98.2 7.4E-05 2.5E-09 72.9 18.0 158 460-659 24-185 (266)
261 3nok_A Glutaminyl cyclase; bet 98.2 9.8E-05 3.4E-09 71.1 18.4 179 424-629 60-256 (268)
262 3qqz_A Putative uncharacterize 98.1 0.00073 2.5E-08 65.5 23.7 197 421-655 29-253 (255)
263 3tc9_A Hypothetical hydrolase; 98.1 8.7E-05 3E-09 78.9 18.0 161 458-655 138-301 (430)
264 3mbr_X Glutamine cyclotransfer 98.1 0.00027 9.2E-09 67.5 19.1 179 424-629 26-225 (243)
265 1kb0_A Quinohemoprotein alcoho 98.1 0.0016 5.5E-08 73.5 28.8 58 586-662 457-515 (677)
266 1xip_A Nucleoporin NUP159; bet 98.1 6.5E-05 2.2E-09 77.8 15.8 173 421-629 40-235 (388)
267 2ad6_A Methanol dehydrogenase 98.0 0.014 4.8E-07 64.2 35.3 103 515-627 390-526 (571)
268 4hw6_A Hypothetical protein, I 98.0 0.00053 1.8E-08 72.8 22.0 139 323-475 142-291 (433)
269 4hvt_A Ritya.17583.B, post-pro 98.0 0.00071 2.4E-08 76.1 24.0 264 327-603 137-437 (711)
270 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.01 3.5E-07 61.5 29.8 245 331-629 102-369 (376)
271 3qqz_A Putative uncharacterize 97.9 0.0023 7.9E-08 61.9 22.5 199 369-595 26-253 (255)
272 3kya_A Putative phosphatase; s 97.9 0.0026 9.1E-08 67.7 24.8 146 323-475 142-328 (496)
273 3hxj_A Pyrrolo-quinoline quino 97.9 0.0016 5.6E-08 66.0 22.7 194 430-675 107-304 (330)
274 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.013 4.4E-07 60.7 30.0 294 171-541 48-375 (376)
275 1yiq_A Quinohemoprotein alcoho 97.9 0.013 4.5E-07 66.2 32.0 82 535-626 455-536 (689)
276 3hxj_A Pyrrolo-quinoline quino 97.9 0.0062 2.1E-07 61.6 26.7 171 422-628 140-314 (330)
277 3kya_A Putative phosphatase; s 97.9 0.00024 8.2E-09 75.7 16.1 163 459-656 141-342 (496)
278 4a2l_A BT_4663, two-component 97.8 0.1 3.5E-06 60.1 40.5 188 425-664 412-623 (795)
279 3nol_A Glutamine cyclotransfer 97.8 0.00071 2.4E-08 65.2 16.3 158 461-662 47-208 (262)
280 3sre_A PON1, serum paraoxonase 97.7 0.002 7E-08 65.7 19.7 164 438-623 82-282 (355)
281 3mbr_X Glutamine cyclotransfer 97.7 0.0017 5.6E-08 62.1 17.6 178 175-388 29-222 (243)
282 2ism_A Putative oxidoreductase 97.7 0.0028 9.6E-08 65.2 20.6 192 423-627 79-333 (352)
283 1yiq_A Quinohemoprotein alcoho 97.7 0.031 1E-06 63.1 30.5 71 586-675 455-527 (689)
284 2ad6_A Methanol dehydrogenase 97.7 0.089 3E-06 57.8 33.3 58 586-662 444-502 (571)
285 4hw6_A Hypothetical protein, I 97.7 0.0012 4.1E-08 70.0 17.7 160 458-655 140-304 (433)
286 1w6s_A Methanol dehydrogenase 97.6 0.12 4.2E-06 56.8 34.8 82 535-626 453-534 (599)
287 3a9g_A Putative uncharacterize 97.6 0.0079 2.7E-07 61.8 22.2 195 423-627 77-330 (354)
288 1xip_A Nucleoporin NUP159; bet 97.6 0.0008 2.7E-08 69.6 14.5 169 458-676 39-224 (388)
289 3v9f_A Two-component system se 97.5 0.22 7.4E-06 57.2 38.0 188 425-663 413-619 (781)
290 3amr_A 3-phytase; beta-propell 97.5 0.01 3.5E-07 59.6 20.8 185 437-654 48-262 (355)
291 3nok_A Glutaminyl cyclase; bet 97.4 0.0014 4.8E-08 63.1 13.1 154 461-661 59-216 (268)
292 3v9f_A Two-component system se 97.4 0.3 1E-05 56.1 36.2 192 425-663 369-576 (781)
293 2hz6_A Endoplasmic reticulum t 97.4 0.00017 5.7E-09 75.1 7.0 182 429-659 8-196 (369)
294 3a9g_A Putative uncharacterize 97.4 0.031 1.1E-06 57.3 23.5 236 321-577 30-330 (354)
295 1w6s_A Methanol dehydrogenase 97.4 0.24 8.2E-06 54.5 31.7 55 586-659 453-507 (599)
296 2g8s_A Glucose/sorbosone dehyd 97.2 0.044 1.5E-06 56.2 22.3 146 322-476 20-216 (353)
297 4hvt_A Ritya.17583.B, post-pro 97.1 0.11 3.9E-06 58.2 26.4 255 374-664 133-438 (711)
298 3das_A Putative oxidoreductase 97.1 0.018 6.1E-07 58.4 17.8 168 504-682 25-219 (347)
299 1kv9_A Type II quinohemoprotei 97.1 0.58 2E-05 52.4 34.6 78 535-622 438-515 (668)
300 2p9w_A MAL S 1 allergenic prot 97.1 0.13 4.3E-06 51.3 22.8 164 421-596 15-216 (334)
301 2ism_A Putative oxidoreductase 97.0 0.01 3.5E-07 61.0 15.5 142 503-655 23-178 (352)
302 1k3i_A Galactose oxidase precu 97.0 0.12 4E-06 58.1 25.4 145 205-362 175-329 (656)
303 3das_A Putative oxidoreductase 97.0 0.3 1E-05 49.4 25.8 233 321-577 33-326 (347)
304 3sre_A PON1, serum paraoxonase 97.0 0.015 5.1E-07 59.3 15.8 123 512-655 113-252 (355)
305 1flg_A Protein (quinoprotein e 97.0 0.64 2.2E-05 51.0 36.1 82 534-625 465-546 (582)
306 1kv9_A Type II quinohemoprotei 96.9 0.73 2.5E-05 51.6 30.6 58 586-662 438-496 (668)
307 1k3i_A Galactose oxidase precu 96.9 0.076 2.6E-06 59.6 22.3 268 347-628 219-531 (656)
308 2vpj_A Kelch-like protein 12; 96.9 0.18 6.2E-06 50.0 22.7 156 487-663 128-286 (301)
309 2xzh_A Clathrin heavy chain 1; 96.8 0.5 1.7E-05 46.7 23.8 235 332-599 36-294 (365)
310 2p9w_A MAL S 1 allergenic prot 96.8 0.052 1.8E-06 54.1 17.0 164 458-656 14-216 (334)
311 2g8s_A Glucose/sorbosone dehyd 96.7 0.012 4E-07 60.5 12.8 137 512-656 19-174 (353)
312 1bpo_A Protein (clathrin); cla 96.7 0.71 2.4E-05 47.5 25.2 235 332-599 35-293 (494)
313 2hz6_A Endoplasmic reticulum t 96.6 0.0028 9.6E-08 65.8 7.4 164 426-621 45-217 (369)
314 1flg_A Protein (quinoprotein e 96.6 1.1 3.8E-05 49.1 33.2 58 586-662 466-524 (582)
315 3sbq_A Nitrous-oxide reductase 96.3 1.4 4.9E-05 46.7 26.5 138 511-664 323-487 (638)
316 4asc_A Kelch repeat and BTB do 96.3 0.88 3E-05 45.3 23.5 211 432-663 6-229 (315)
317 2xn4_A Kelch-like protein 2; s 96.3 0.47 1.6E-05 46.9 21.4 199 439-662 77-283 (302)
318 3ii7_A Kelch-like protein 7; p 96.2 0.34 1.2E-05 48.1 19.5 201 439-663 70-280 (306)
319 1cru_A Protein (soluble quinop 96.1 0.043 1.5E-06 58.3 13.1 122 504-629 20-164 (454)
320 2vpj_A Kelch-like protein 12; 95.9 0.55 1.9E-05 46.4 19.7 200 439-663 31-239 (301)
321 3amr_A 3-phytase; beta-propell 95.9 0.42 1.4E-05 48.0 18.1 177 197-392 51-253 (355)
322 4asc_A Kelch repeat and BTB do 95.8 0.86 2.9E-05 45.4 20.8 209 440-662 68-284 (315)
323 1zgk_A Kelch-like ECH-associat 95.7 0.27 9.2E-06 49.0 16.6 200 439-663 90-295 (308)
324 2woz_A Kelch repeat and BTB do 95.7 2 6.7E-05 42.8 22.7 212 432-663 17-239 (318)
325 2xn4_A Kelch-like protein 2; s 95.6 0.88 3E-05 44.9 19.8 202 439-663 30-237 (302)
326 3ii7_A Kelch-like protein 7; p 95.5 0.52 1.8E-05 46.8 17.8 200 438-663 23-233 (306)
327 1cru_A Protein (soluble quinop 95.2 0.39 1.3E-05 50.8 16.2 154 422-577 30-246 (454)
328 1zgk_A Kelch-like ECH-associat 94.8 0.57 1.9E-05 46.6 15.4 155 488-663 91-248 (308)
329 2woz_A Kelch repeat and BTB do 94.6 2.3 7.7E-05 42.3 19.3 164 486-661 126-293 (318)
330 2uvk_A YJHT; unknown function, 94.5 3.6 0.00012 41.5 20.9 158 487-663 168-350 (357)
331 1xi4_A Clathrin heavy chain; a 94.0 4 0.00014 48.7 21.3 225 344-598 45-292 (1630)
332 2xzh_A Clathrin heavy chain 1; 93.9 5.4 0.00019 39.4 24.7 220 400-659 49-294 (365)
333 1bpo_A Protein (clathrin); cla 93.9 6.9 0.00023 40.3 23.0 220 400-659 48-293 (494)
334 2wg3_C Hedgehog-interacting pr 93.1 0.88 3E-05 48.1 13.3 142 511-656 14-187 (463)
335 3zwu_A Alkaline phosphatase PH 92.5 2.9 9.8E-05 45.4 16.4 70 561-630 479-553 (592)
336 2zwa_A Leucine carboxyl methyl 92.4 5.1 0.00017 44.9 19.2 203 439-661 412-641 (695)
337 2wg3_C Hedgehog-interacting pr 92.4 5.1 0.00017 42.2 17.9 130 457-596 14-187 (463)
338 3q6k_A 43.2 kDa salivary prote 91.8 12 0.00042 37.9 21.6 194 349-578 125-343 (381)
339 3pbp_A Nucleoporin NUP82; beta 91.7 9.8 0.00033 39.1 18.1 143 422-576 24-198 (452)
340 3q6k_A 43.2 kDa salivary prote 91.0 10 0.00035 38.5 17.7 156 431-628 170-343 (381)
341 2uvk_A YJHT; unknown function, 90.9 14 0.00048 37.0 20.5 157 439-603 168-350 (357)
342 3sbq_A Nitrous-oxide reductase 90.1 22 0.00075 37.9 19.7 197 429-654 141-407 (638)
343 4a9v_A PHOX; hydrolase, beta-p 88.8 3.5 0.00012 44.2 12.4 70 560-630 478-553 (592)
344 2xbg_A YCF48-like protein; pho 87.8 23 0.00078 35.1 23.0 168 424-620 127-305 (327)
345 3pbp_A Nucleoporin NUP82; beta 87.6 13 0.00045 38.2 15.3 104 512-626 67-198 (452)
346 1tl2_A L10, protein (tachylect 85.7 11 0.00037 35.0 12.2 142 458-625 42-199 (236)
347 1xi4_A Clathrin heavy chain; a 85.6 27 0.00091 41.9 18.2 175 400-595 48-235 (1630)
348 2xbg_A YCF48-like protein; pho 80.6 46 0.0016 32.8 17.4 99 512-624 164-266 (327)
349 4a9v_A PHOX; hydrolase, beta-p 78.2 3.8 0.00013 43.9 7.2 63 513-579 478-552 (592)
350 1tl2_A L10, protein (tachylect 76.5 6.3 0.00021 36.6 7.2 99 512-625 42-152 (236)
351 2zwa_A Leucine carboxyl methyl 75.3 37 0.0013 37.8 14.9 128 521-663 451-591 (695)
352 3ott_A Two-component system se 71.8 1.3E+02 0.0045 33.6 22.6 92 515-623 150-247 (758)
353 3hx6_A Type 4 fimbrial biogene 64.2 85 0.0029 33.5 13.5 80 523-602 152-239 (570)
354 3zwu_A Alkaline phosphatase PH 64.1 11 0.00039 40.7 7.1 62 514-578 479-551 (592)
355 2be1_A Serine/threonine-protei 62.5 65 0.0022 32.0 11.8 23 522-547 111-133 (339)
356 2be1_A Serine/threonine-protei 46.8 43 0.0015 33.3 7.5 21 524-547 12-32 (339)
357 3hx6_A Type 4 fimbrial biogene 27.4 5.9E+02 0.02 27.1 13.7 69 520-597 204-286 (570)
358 3b7f_A Glycosyl hydrolase, BNR 25.9 4.9E+02 0.017 25.7 19.3 44 432-475 24-74 (394)
359 3s9j_A Member of DUF4221 famil 23.0 5.3E+02 0.018 25.7 10.9 129 519-662 36-181 (369)
No 1
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1e-33 Score=340.46 Aligned_cols=524 Identities=13% Similarity=0.101 Sum_probs=351.5
Q ss_pred CceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCce
Q 004971 29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQ 108 (721)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (721)
.+.++|+ ...+||..+..+ +..++|+.|...+..++|||||+ +
T Consensus 24 ~~~iaf~------~~~~l~~~~~~g----g~~~~lt~~~~~v~~~~~SPDG~---------------------------~ 66 (1045)
T 1k32_A 24 GDRIIFV------CCDDLWEHDLKS----GSTRKIVSNLGVINNARFFPDGR---------------------------K 66 (1045)
T ss_dssp TTEEEEE------ETTEEEEEETTT----CCEEEEECSSSEEEEEEECTTSS---------------------------E
T ss_pred CCEEEEE------ECCcEEEEECCC----CcEEEeeeCCCcccCeEECCCCC---------------------------E
Confidence 4688998 346899999877 89999999999999999999999 9
Q ss_pred EEEEeee---cCCceeEEeeeecCcccccccchhhh-cccccccc--ce-eeccccccccCCceeeeeecccccCCEEEE
Q 004971 109 LIYVTER---NGTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVST--RV-QVPLLDLNEVNGGVISMKDKPILSGEYLIY 181 (721)
Q Consensus 109 ~~~~~~~---~g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~ 181 (721)
|+|.+.. +|...||++++.+|+ .++ |+ +.. .. ++ .+..+ .| +| ||+ ++|
T Consensus 67 la~~s~~~~~~~~~~i~~~d~~~g~----~~~--lt~~~~---~~~~~~~~~~~~-------~~-----Sp--Dg~-ll~ 122 (1045)
T 1k32_A 67 IAIRVMRGSSLNTADLYFYNGENGE----IKR--ITYFSG---KSTGRRMFTDVA-------GF-----DP--DGN-LII 122 (1045)
T ss_dssp EEEEEEESTTCCEEEEEEEETTTTE----EEE--CCCCCE---EEETTEECSEEE-------EE-----CT--TCC-EEE
T ss_pred EEEEEeeccCCCCCeEEEEECCCCC----eEE--cccCCC---cccccccccccc-------cC-----CC--CCE-EEE
Confidence 9999877 677789999987776 666 77 432 11 00 00011 68 99 999 888
Q ss_pred EecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEec--CCCCCCcccceeeeeEEEEEcCCC
Q 004971 182 VSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY--GNKGWDGEVEMLSTDIYIFLTRDG 259 (721)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~--~~~~w~~~~~~~~~~i~~~d~~~g 259 (721)
++....... ....||.+++++++.++++.... ...+||| | ++++... ....|+.|.+....+||+.+.. +
T Consensus 123 ~~~~~~~~~---~~~~l~~~~~~~g~~~~l~~~~~--~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~ 194 (1045)
T 1k32_A 123 STDAMQPFS---SMTCLYRVENDGINFVPLNLGPA--THILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G 194 (1045)
T ss_dssp EECTTSSST---TCCEEEEEEGGGTEEEECCSCSC--SEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T
T ss_pred EECCcCCCc---ccceEEEEECCCCCeEEecCCCc--ceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-C
Confidence 776532111 02489999999999998876543 2346999 8 6666543 2236888888888899998765 7
Q ss_pred ceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEE
Q 004971 260 TQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337 (721)
Q Consensus 260 ~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~ 337 (721)
+.+++..+.+. .+.|++| +++|. ...++...||.+...+ . ...+++.+. ....++||| ||++|++
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~--~~~dg~~~l~~~~~~g-~-------~~~~l~~~~-~~~~~~~Sp-DG~~la~ 261 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFI--TDIDGFGQIYSTDLDG-K-------DLRKHTSFT-DYYPRHLNT-DGRRILF 261 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEE--ECTTSSCEEEEEETTS-C-------SCEECCCCC-SSCEEEEEE-SSSCEEE
T ss_pred CeEECcCCCCcccceEEeCC-EEEEE--EeccCceEEEEEeCCC-C-------cceEecCCC-CcceeeEcC-CCCEEEE
Confidence 77777543333 6799999 88774 3446788999665443 2 456666554 345679999 9999999
Q ss_pred EEecCCCCeeeEEEEECCCCceEEeeccc--------CCCCcccCcEEc-CCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 338 ATRRPTSSYRHIELFDLVKNKFIELTRFV--------SPKTHHLNPFIS-PDSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 338 ~~~~~g~~~~~l~l~dl~tg~~~~l~~~~--------~~~~~~~~~~~S-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
.. +..|++||+.+.+...+.... .+...+..++|| |||++|++.. . ..++++++.
T Consensus 262 ~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~-------~~i~~~~~~ 325 (1045)
T 1k32_A 262 SK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---R-------GQAFIQDVS 325 (1045)
T ss_dssp EE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---T-------TEEEEECTT
T ss_pred Ee------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE---c-------CEEEEEcCC
Confidence 63 235999999655443322100 012246789999 9999999976 2 346777665
Q ss_pred CCCC-cceeccc-CCCCceeCcCCCEEEEEe-CCcEE-EEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 409 SPLP-DISLFRF-DGSFPSFSPKGDRIAFVE-FPGVY-VVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 409 ~~~~-~~~~~~~-~~~~~~~SpDG~~la~~~-~~~l~-v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
++.. .+..... ....++|+ ||+.|++.+ ...|+ ++++.+++.+.+. ...+..++|||||++|++.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~------ 398 (1045)
T 1k32_A 326 GTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND------ 398 (1045)
T ss_dssp SSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET------
T ss_pred CCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC------
Confidence 4421 1111111 23457899 999999985 55788 9999998877776 345678999999999999873
Q ss_pred CCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeC-------CceeEEEEECCCCcccceEECc
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
++.+.+| +..++ ....+. .+...+..++|||||++|++.+... ....|++||+.+++ +..++
T Consensus 399 -~~~v~~~--d~~tg----~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~ 468 (1045)
T 1k32_A 399 -RFEIMTV--DLETG----KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT 468 (1045)
T ss_dssp -TSEEEEE--ETTTC----CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS
T ss_pred -CCeEEEE--ECCCC----ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEee
Confidence 3455555 44443 445554 4555678899999999999987642 34689999999887 67787
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCC-----------CCCceeEEEEec------------------------CCC--c
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNP-----------GSGSFEMYLIHP------------------------NGT--G 597 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-----------~~~~~~i~~~d~------------------------~~~--~ 597 (721)
.+......++|||||++|++.+.+... ......+|.+-+ ++. .
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 548 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 548 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGG
T ss_pred CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHc
Confidence 776666789999999999998875310 001112333322 211 1
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
...+. .+.+.+..++++|||+.++.....+... . ....+.....||.||+.+++.+.+.. .+...+|||+
T Consensus 549 ~~~l~--~~~~~~~~~~~s~dg~~~~~~~~~g~~~-~---~~~~~~~~~~l~~~d~~~~~~~~l~~---~v~~~~~S~D 618 (1045)
T 1k32_A 549 SSPIN--VDPGDYRMIIPLESSILIYSVPVHGEFA-A---YYQGAPEKGVLLKYDVKTRKVTEVKN---NLTDLRLSAD 618 (1045)
T ss_dssp CEECS--CCCBCEEEEEECSSEEEEEECCCCCSHH-H---HHHCCCCCEEEEEEETTTCCEEEEEE---EEEEEEECTT
T ss_pred eEEcC--CCCCChhheEEcCCCeEEEEecccCccc-c---cccccCCCceEEEEECCCCcEEEeec---CcceEEECCC
Confidence 11221 1335567789999998766522100000 0 00000112369999999998887772 2456789997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-31 Score=300.13 Aligned_cols=482 Identities=18% Similarity=0.185 Sum_probs=330.4
Q ss_pred ceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccch
Q 004971 59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRT 138 (721)
Q Consensus 59 ~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~ 138 (721)
+..||.+|...+...+|||||+ +||. +..+|.+.||.. .++. .+.
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~---------------------------~las-~~~d~~v~iWd~---~~~~---~~~- 52 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQ---------------------------TIAS-ASDDKTVKLWNR---NGQL---LQT- 52 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSS---------------------------CEEE-EETTSEEEEECT---TSCE---EEE-
T ss_pred EeeEECCCCCcEEEEEECCCCC---------------------------EEEE-EeCCCEEEEEEC---CCCE---EEE-
Confidence 3467999999999999999998 7664 457888888863 3431 222
Q ss_pred hhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCC
Q 004971 139 ALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVA 217 (721)
Q Consensus 139 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~ 217 (721)
|. |.. .|. .+ .| +| ||++|+..+.++. ..|| +..+.....+..+...
T Consensus 53 -l~gh~~-----~V~--~l-------~f-----sp--dg~~las~~~d~~--------i~vW--d~~~~~~~~~~~~~~~ 100 (577)
T 2ymu_A 53 -LTGHSS-----SVW--GV-------AF-----SP--DGQTIASASDDKT--------VKLW--NRNGQLLQTLTGHSSS 100 (577)
T ss_dssp -EECCSS-----CEE--EE-------EE-----CT--TSSEEEEEETTSC--------EEEE--ETTSCEEEEECCCSSC
T ss_pred -EeCCCC-----CEE--EE-------EE-----CC--CCCEEEEEeCCCE--------EEEE--ECCCCEEEEEECCCCC
Confidence 44 322 111 11 46 99 9999988765531 3555 5666667777777776
Q ss_pred ccccccCCCCCEEEEEecCCCC--CCcc----------------------------------------------------
Q 004971 218 DFSPAVSPSGKYTAVASYGNKG--WDGE---------------------------------------------------- 243 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~~~~~--w~~~---------------------------------------------------- 243 (721)
....+|||||++|+.+..++.. |...
T Consensus 101 v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (577)
T 2ymu_A 101 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred EEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCC
Confidence 6777899999999987643220 0000
Q ss_pred ----------------cceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcce
Q 004971 244 ----------------VEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLV 305 (721)
Q Consensus 244 ----------------~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~ 305 (721)
.+.....|.+|+..+.....+..+... ..+|+|||+.+++ ...++.+.+|. ..+.
T Consensus 181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~~d~~i~~w~---~~~~-- 253 (577)
T 2ymu_A 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWN---RNGQ-- 253 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTSCEEEEC---TTSC--
T ss_pred cceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEE--EeCCCEEEEEe---CCCC--
Confidence 011123345555422222222222222 3478888775553 22367788883 2222
Q ss_pred eccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971 306 STESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385 (721)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~ 385 (721)
....+..+...+..++|+| ||+.|+.... +..|++||....... ....+...+..++|+||++.|+
T Consensus 254 -----~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~-----d~~i~~w~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 254 -----LLQTLTGHSSSVNGVAFRP-DGQTIASASD-----DKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp -----EEEEECCCSSCEEEEEECT-TSSEEEEEET-----TSCEEEEETTSCEEE---EECCCSSCEEEEEECTTSSEEE
T ss_pred -----EEEEEecCCCCEEEEEEcC-CCCEEEEEeC-----CCEEEEEeCCCcEEE---EEecCCCCeEEEEECCCCCEEE
Confidence 3445566666778899999 9999887543 345999997543322 2345567788899999999998
Q ss_pred EEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCcee
Q 004971 386 YHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFS 461 (721)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~ 461 (721)
....++. +.++++.+.. ..+.........++|+|||+.|+... ++.+.+|+..+.....+. ...+..
T Consensus 320 t~~~d~~---------i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 320 SASDDKT---------VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG 390 (577)
T ss_dssp EEETTSC---------EEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEE
T ss_pred EEeCCCe---------EEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEE
Confidence 8765554 4444543321 11111122234578999999999885 678999998765555555 456789
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
++|+|||++|+..+ .++.+.||+. .+. ....+..+...+..++|+||+++|+..+. +..|++||
T Consensus 391 ~~~s~dg~~l~~~~-------~d~~v~~~~~--~~~----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---d~~v~~w~ 454 (577)
T 2ymu_A 391 VAFSPDGQTIASAS-------DDKTVKLWNR--NGQ----LLQTLTGHSSSVWGVAFSPDDQTIASASD---DKTVKLWN 454 (577)
T ss_dssp EEECTTSSCEEEEE-------TTSEEEEECT--TCC----EEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred EEECCCCCEEEEEe-------CCCEEEEEeC--CCC----EEEEecCCCCCeEEEEECCCCCEEEEEcC---CCEEEEEE
Confidence 99999999999886 4678888863 332 56667777777888999999999998886 77899999
Q ss_pred CCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621 (721)
Q Consensus 542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~ 621 (721)
..+.. +..+..+...+..++|+|||++|+.+..+. .|++||..+...+.+. ++...+..++|||||++
T Consensus 455 ~~~~~---~~~~~~~~~~v~~~~~spd~~~las~~~d~-------~i~iw~~~~~~~~~~~--~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 455 RNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDDK-------TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp TTSCE---EEEEECCSSCEEEEEECTTSCEEEEEETTS-------EEEEEETTSCEEEEEE--CCSSCEEEEEECTTSSC
T ss_pred CCCCE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-------EEEEEcCCCCEEEEEe--CCCCCEEEEEEcCCCCE
Confidence 86543 666777777788999999999999988875 8999997654444443 37778899999999999
Q ss_pred EEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC--cCCccc
Q 004971 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR--FIRPVD 682 (721)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~--~l~~~~ 682 (721)
|+..+.+. .|++||.++.....+..|...+...+|+|+ +|+.+.
T Consensus 523 l~s~~~dg-----------------~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 523 IASASDDK-----------------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp EEEEETTS-----------------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEECcC-----------------EEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 98877654 499999887777888888888899999997 454444
No 3
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.7e-31 Score=315.86 Aligned_cols=424 Identities=14% Similarity=0.162 Sum_probs=307.5
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecC---CCCCCccccee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYG---NKGWDGEVEML 247 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~---~~~w~~~~~~~ 247 (721)
+|+++|++|+|++.. .||.+++++++.++|+.+......|+|||||++|||++.+ ..
T Consensus 19 ~~~~S~~~iaf~~~~-----------~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~--------- 78 (1045)
T 1k32_A 19 NPDIHGDRIIFVCCD-----------DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLN--------- 78 (1045)
T ss_dssp EEEEETTEEEEEETT-----------EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCC---------
T ss_pred CcEEeCCEEEEEECC-----------cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCC---------
Confidence 455567899998863 8999999999999999988888899999999999998754 22
Q ss_pred eeeEEEEEcCCCceeEEEeccC---------CcceeccCCeEEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeC
Q 004971 248 STDIYIFLTRDGTQRVKIVENG---------GWPCWVDESTLFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVT 316 (721)
Q Consensus 248 ~~~i~~~d~~~g~~~~l~~~~~---------~~~~ws~dg~l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~ 316 (721)
...||+|++++|+.++++.+.. ..++|+|||+++|....+ ..+...||.+...++ ...+++
T Consensus 79 ~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g--------~~~~l~ 150 (1045)
T 1k32_A 79 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI--------NFVPLN 150 (1045)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT--------EEEECC
T ss_pred CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC--------CeEEec
Confidence 4789999999999888765433 246999999977754321 124567885555442 455555
Q ss_pred CCCCcccCceeecCCCCEEEEEEec---------CCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEE
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRR---------PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH 387 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~---------~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~ 387 (721)
... ...+.||| | .++..... .+.....||+.+.. ++...+ ..+...+..+.|++| .+++.
T Consensus 151 ~~~--~~~~~~sp--G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l---~~~~~~v~~~~~s~d--~l~~~ 219 (1045)
T 1k32_A 151 LGP--ATHILFAD--G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKI---VDMSTHVSSPVIVGH--RIYFI 219 (1045)
T ss_dssp SCS--CSEEEEET--T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEE---ECCSSCCEEEEEETT--EEEEE
T ss_pred CCC--cceeeeCC--C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEEC---cCCCCcccceEEeCC--EEEEE
Confidence 543 23566888 4 55554311 12334567776654 555555 445777888999987 77776
Q ss_pred EeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEee----------
Q 004971 388 KCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF---------- 456 (721)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~---------- 456 (721)
....+ ...+|..+..+... .++.. .....++|||||++|++.....|++|++.++....+..
T Consensus 220 ~~~dg------~~~l~~~~~~g~~~~~l~~~-~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~ 292 (1045)
T 1k32_A 220 TDIDG------FGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI 292 (1045)
T ss_dssp ECTTS------SCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred EeccC------ceEEEEEeCCCCcceEecCC-CCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence 54432 15688877655422 22221 12334699999999999999999999996665554432
Q ss_pred ---cCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCcceEEccCCCEEEEEEee
Q 004971 457 ---KNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 457 ---~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~SpDg~~l~~~s~~ 531 (721)
..+..+.|| |||++|++.+. + .|+.++..+. ....+..+.. ....++|+ ||++|++.+.
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~~--------~--~i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~- 356 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVSR--------G--QAFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR- 356 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEET--------T--EEEEECTTSS----BEEECSCCSCEEEEEECSS-SEEEEEEEET-
T ss_pred ccccccceeeecCCCCCEEEEEEc--------C--EEEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCeEEEEEC-
Confidence 147889999 99999999862 3 3555555543 5566666655 67789999 9999999987
Q ss_pred CCceeEE-EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971 532 TGYKNLY-IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610 (721)
Q Consensus 532 ~g~~~l~-~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 610 (721)
...|+ +|++.+++ ...+..+...+..++|||||++|++...+. .|++||+.+++.+.+... +.+.+
T Consensus 357 --~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~SpDG~~la~~~~~~-------~v~~~d~~tg~~~~~~~~-~~~~v 423 (1045)
T 1k32_A 357 --EGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRNGKFAVVANDRF-------EIMTVDLETGKPTVIERS-REAMI 423 (1045)
T ss_dssp --TEEEEEEEETTTCC---EEECCCCCCSEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEEC-SSSCC
T ss_pred --CCceEEEEECCCCC---ceEecCCccceeeeEECCCCCEEEEECCCC-------eEEEEECCCCceEEeccC-CCCCc
Confidence 67899 99999887 666775556678899999999999998774 899999999988887643 56677
Q ss_pred CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
..++|||||++|++.+.+...+. .......|++||+++++.+.++.+......++|+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~-------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGET-------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTT-------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred cceEECCCCCeEEEEecCccccc-------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence 89999999999999877540000 000124699999999998899988777778999996
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-29 Score=285.77 Aligned_cols=448 Identities=14% Similarity=0.094 Sum_probs=287.2
Q ss_pred CceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccc
Q 004971 58 ANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSR 137 (721)
Q Consensus 58 ~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~ 137 (721)
.....+..|...+...+|||||+ +|+ ++..+|.+.||.+. .++. ..+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~---------------------------~la-sg~~d~~v~lWd~~--~~~~---~~~ 96 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGY---------------------------YCA-SGDVHGNVRIWDTT--QTTH---ILK 96 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSS---------------------------EEE-EEETTSEEEEEESS--STTC---CEE
T ss_pred ccCeEecCCCCceEEEEECCCCc---------------------------EEE-EEeCCCCEEEeECC--CCcc---eee
Confidence 34566789999999999999997 655 55678999999864 2220 111
Q ss_pred hhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCC
Q 004971 138 TALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGV 216 (721)
Q Consensus 138 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~ 216 (721)
..+. +.. .| ..+ .| +| ||++|+.++..... ...++..+. +.....+..|..
T Consensus 97 ~~~~~~~~-----~v--~~v-------~f-----s~--dg~~l~~~~~~~~~------~~~v~~wd~-~~~~~~l~gh~~ 148 (611)
T 1nr0_A 97 TTIPVFSG-----PV--KDI-------SW-----DS--ESKRIAAVGEGRER------FGHVFLFDT-GTSNGNLTGQAR 148 (611)
T ss_dssp EEEECSSS-----CE--EEE-------EE-----CT--TSCEEEEEECCSSC------SEEEEETTT-CCBCBCCCCCSS
T ss_pred EeecccCC-----ce--EEE-------EE-----CC--CCCEEEEEECCCCc------eeEEEEeeC-CCCcceecCCCC
Confidence 0122 211 11 111 57 99 99999887654321 136777763 333445656666
Q ss_pred CccccccCCCCCE-EEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcE
Q 004971 217 ADFSPAVSPSGKY-TAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWI 292 (721)
Q Consensus 217 ~~~~p~~SPDG~~-la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~ 292 (721)
.....+|+|++++ |+.++.+ ..|.+|+..+++.......... ..+|+|||+++++ ...++.+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D------------~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las--~s~D~~i 214 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDD------------NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS--TGGDGTI 214 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETT------------SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCE
T ss_pred CceEEEECCCCCeEEEEEeCC------------CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE--EECCCcE
Confidence 6677799999974 7776644 3578888877665443332222 4589999997774 3347899
Q ss_pred EEEEEecCCCcceeccccceEEeC-------CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe---
Q 004971 293 SVYKVILPQTGLVSTESVSIQRVT-------PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL--- 362 (721)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l--- 362 (721)
.+|...... ....+. .+...+..++|+| ||++|+... .+..|++||+.+++....
T Consensus 215 ~lwd~~~g~---------~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s-----~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 215 VLYNGVDGT---------KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASAS-----ADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp EEEETTTCC---------EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEE-----TTSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCc---------EeeeeccccccccccCCCEEEEEECC-CCCEEEEEe-----CCCeEEEEeCCCCceeeeecC
Confidence 999542221 222221 4555678899999 999998754 345699999988754221
Q ss_pred --------------------------------------ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971 363 --------------------------------------TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 363 --------------------------------------~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~ 404 (721)
....+|...+..++|+|||+.|+..+.++. +.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~---------v~~ 350 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH---------INS 350 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEE
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc---------EEE
Confidence 111245566778899999999998776554 444
Q ss_pred EeccCCCCccee---cccCCCCcee--------------------------------------------CcCCCEEEEEe
Q 004971 405 ENIKSPLPDISL---FRFDGSFPSF--------------------------------------------SPKGDRIAFVE 437 (721)
Q Consensus 405 ~~~~~~~~~~~~---~~~~~~~~~~--------------------------------------------SpDG~~la~~~ 437 (721)
+++..+...... .......++| +|||+.++...
T Consensus 351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred EECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 454433110000 0011112344 44444444333
Q ss_pred CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971 438 FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 516 (721)
...+.+|+ .++...+. ...+..++|||||+.|+..+ .++.++||++..... ..... ..+...+..+
T Consensus 431 ~~~v~~~~--~~~~~~~~~~~~v~~va~spdg~~lasgs-------~D~~v~lwd~~~~~~---~~~~~-~~h~~~v~~v 497 (611)
T 1nr0_A 431 YKHIAIYS--HGKLTEVPISYNSSCVALSNDKQFVAVGG-------QDSKVHVYKLSGASV---SEVKT-IVHPAEITSV 497 (611)
T ss_dssp SSEEEEEE--TTEEEEEECSSCEEEEEECTTSCEEEEEE-------TTSEEEEEEEETTEE---EEEEE-EECSSCEEEE
T ss_pred CceEEEEe--CCceeeeecCCCceEEEEeCCCCEEEEeC-------CCCeEEEEEccCCce---eeeec-cCCCCceEEE
Confidence 44444444 12222222 23456899999999999987 578999999875321 01122 4455678889
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEE--CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~--l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
+|||||++|+..+. +..|++|++.+ ++. ... ...+...+..++|||||++|+.++.+. .|++|++
T Consensus 498 ~fspdg~~las~s~---d~~v~~w~~~~~~~~--~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-------~v~lW~~ 565 (611)
T 1nr0_A 498 AFSNNGAFLVATDQ---SRKVIPYSVANNFEL--AHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-------SVIVWNM 565 (611)
T ss_dssp EECTTSSEEEEEET---TSCEEEEEGGGTTEE--SCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEET
T ss_pred EECCCCCEEEEEcC---CCCEEEEEcCCCCce--eeeeeeeecccceeEEEECCCCCEEEEEECCC-------cEEEEEC
Confidence 99999999998887 78899999987 442 111 222566788999999999999999885 8999999
Q ss_pred CCCceEE-eeecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971 594 NGTGLRK-LIQSGS-AGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 594 ~~~~~~~-l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
++++... ....+| ...+..++|+|||+ |+..+.+..
T Consensus 566 ~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~ 603 (611)
T 1nr0_A 566 NKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN 603 (611)
T ss_dssp TCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred CCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence 8765221 222235 57788999999998 777666553
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.98 E-value=1.3e-29 Score=286.99 Aligned_cols=424 Identities=11% Similarity=0.076 Sum_probs=275.3
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcc-eEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL-TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~-~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
+| ||++|+..+.++. ..||.+...... ...+..+.......+|||||++|+.+..+.. ...
T Consensus 68 sp--dg~~lasg~~d~~--------v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~--------~~~ 129 (611)
T 1nr0_A 68 SP--SGYYCASGDVHGN--------VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE--------RFG 129 (611)
T ss_dssp CT--TSSEEEEEETTSE--------EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS--------CSE
T ss_pred CC--CCcEEEEEeCCCC--------EEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC--------cee
Confidence 99 9999998776531 356654322222 2345556666667799999999998764332 125
Q ss_pred eEEEEEcCCCcee-EEEeccCC--cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971 250 DIYIFLTRDGTQR-VKIVENGG--WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325 (721)
Q Consensus 250 ~i~~~d~~~g~~~-~l~~~~~~--~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (721)
.|++|+. ++.. .+..+... ..+|+|++. .+++ ...++.+.+|... ... ....+..+...+..+
T Consensus 130 ~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s--~s~D~~v~lwd~~--~~~-------~~~~l~~H~~~V~~v 196 (611)
T 1nr0_A 130 HVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIIS--GSDDNTVAIFEGP--PFK-------FKSTFGEHTKFVHSV 196 (611)
T ss_dssp EEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEE--EETTSCEEEEETT--TBE-------EEEEECCCSSCEEEE
T ss_pred EEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEE--EeCCCeEEEEECC--CCe-------EeeeeccccCceEEE
Confidence 7888874 3322 22222222 458999986 3443 3337899999532 111 334556676678899
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
+|+| ||++|+... .+..|++||+.+++....... ..|...+..++|+|||+.|+..+.++.
T Consensus 197 ~fsp-dg~~las~s-----~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-------- 262 (611)
T 1nr0_A 197 RYNP-DGSLFASTG-----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-------- 262 (611)
T ss_dssp EECT-TSSEEEEEE-----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE--------
T ss_pred EECC-CCCEEEEEE-----CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe--------
Confidence 9999 999988754 345699999998875432211 146677888999999999998776554
Q ss_pred eeEEEeccCCCC------------------------------------------cce---ecccCCCCceeCcCCCEEEE
Q 004971 401 QLLLENIKSPLP------------------------------------------DIS---LFRFDGSFPSFSPKGDRIAF 435 (721)
Q Consensus 401 ~l~~~~~~~~~~------------------------------------------~~~---~~~~~~~~~~~SpDG~~la~ 435 (721)
+.++++..+.. ... ........++|||||++|+.
T Consensus 263 -v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s 341 (611)
T 1nr0_A 263 -IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341 (611)
T ss_dssp -EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE
Confidence 23333322100 000 01112234689999999988
Q ss_pred Ee-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-----------
Q 004971 436 VE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG----------- 499 (721)
Q Consensus 436 ~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 499 (721)
.+ ++.|.+||+.+++...+. ...+..+.|++++. ++..+ .++.+++|.+.......
T Consensus 342 ~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-l~s~s-------~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 342 ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS-------WDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp EETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE-------TTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred EeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc-EEEEE-------cCCceEEeecCCccccccceeeeecCCC
Confidence 85 789999999988765543 34566788887764 44443 23455555432110000
Q ss_pred -------------------------ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971 500 -------------------------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 500 -------------------------~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
.+....+. +...+..++|||||++|+..+. +..|++||+.++....... .
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~-~ 488 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKT-I 488 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEET---TSEEEEEEEETTEEEEEEE-E
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCC---CCeEEEEEccCCceeeeec-c
Confidence 00111111 2234567899999999999987 7899999998765322233 4
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEe-eecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
.+...+..++|||||++|+.++.+. .|++|++.+ ++.... ....|...+..++|||||++|+..+.+..
T Consensus 489 ~h~~~v~~v~fspdg~~las~s~d~-------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~-- 559 (611)
T 1nr0_A 489 VHPAEITSVAFSNNGAFLVATDQSR-------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-- 559 (611)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTS-------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred CCCCceEEEEECCCCCEEEEEcCCC-------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc--
Confidence 4566678999999999999988875 899999987 433221 11126677889999999999998887663
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCC--e-EEeccC-CCCCCCceecCCc
Q 004971 633 AEPISTPHQYQPYGEIFKIKLDGSD--L-KRLTQN-SFEDGTPAWGPRF 677 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~lt~~-~~~~~~~~~sp~~ 677 (721)
|.+||++++. . ..+..| ...+...+|+|+.
T Consensus 560 ---------------v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 560 ---------------VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp ---------------EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred ---------------EEEEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence 9999998764 2 345556 5677889999964
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=9.3e-28 Score=270.20 Aligned_cols=377 Identities=21% Similarity=0.223 Sum_probs=269.5
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
+| ||++|+..+..+ .+...+..+.....+..+.......+|+|||++|+.+..+ ..
T Consensus 189 ~~--~~~~l~~~~~d~----------~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d------------~~ 244 (577)
T 2ymu_A 189 SP--DGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------------KT 244 (577)
T ss_dssp CT--TSSCEEEEETTS----------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------------SC
T ss_pred cC--CCCEEEEEcCCC----------EEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCC------------CE
Confidence 78 888888766553 5555566666666776776666667899999999987644 35
Q ss_pred EEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceee
Q 004971 251 IYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (721)
|.+|+..+.....+..+... ..+|+||++.+++. ..++.+.+|.. .+. ....+..+...+..++|+
T Consensus 245 i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~--~~d~~i~~w~~---~~~-------~~~~~~~h~~~v~~~~~~ 312 (577)
T 2ymu_A 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKLWNR---NGQ-------LLQTLTGHSSSVWGVAFS 312 (577)
T ss_dssp EEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEET---TSC-------EEEEECCCSSCEEEEEEC
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEeC---CCc-------EEEEEecCCCCeEEEEEC
Confidence 77888643333333222222 45899999866632 33688888842 222 345556666677889999
Q ss_pred cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
| |++.|+... .+..|.+||+.+.....+ ..+...+..++|+|||+.|+....++. +.+++..
T Consensus 313 ~-~~~~l~t~~-----~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~---------v~~~~~~ 374 (577)
T 2ymu_A 313 P-DGQTIASAS-----DDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDKT---------VKLWNRN 374 (577)
T ss_dssp T-TSSEEEEEE-----TTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSE---------EEEEETT
T ss_pred C-CCCEEEEEe-----CCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCCE---------EEEEcCC
Confidence 9 999988754 334599999876654333 345666778999999999988665443 4444433
Q ss_pred CCC-CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCC
Q 004971 409 SPL-PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASES 484 (721)
Q Consensus 409 ~~~-~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~ 484 (721)
+.. ..+.........++|+|||++|+..+ ++.|.+|+..+.....+. ...+..++|+||++.|+..+ .+
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------~d 447 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-------DD 447 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc-------CC
Confidence 221 11111222334578999999999885 678999997665555554 55678899999999999886 56
Q ss_pred CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564 (721)
Q Consensus 485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~ 564 (721)
+.+.+|+. .+. ....+..+...+..++|+|||++|+..+. +..|++||.. ++. +..+..+...+..++
T Consensus 448 ~~v~~w~~--~~~----~~~~~~~~~~~v~~~~~spd~~~las~~~---d~~i~iw~~~-~~~--~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 448 KTVKLWNR--NGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRN-GQL--LQTLTGHSSSVRGVA 515 (577)
T ss_dssp SEEEEEET--TSC----EEEEEECCSSCEEEEEECTTSCEEEEEET---TSEEEEEETT-SCE--EEEEECCSSCEEEEE
T ss_pred CEEEEEEC--CCC----EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC-CCE--EEEEeCCCCCEEEEE
Confidence 78888874 332 56677777777888999999999998887 7889999975 443 667777777788999
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
|||||++|+.++.++ .|++||..+.....+. +|...+..++|+|||++|+..+.+.
T Consensus 516 ~s~dg~~l~s~~~dg-------~v~lwd~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 516 FSPDGQTIASASDDK-------TVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp ECTTSSCEEEEETTS-------EEEEECTTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EcCCCCEEEEEECcC-------EEEEEeCCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 999999999988775 8999997654343333 3778889999999999998877665
No 7
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.7e-27 Score=253.29 Aligned_cols=319 Identities=18% Similarity=0.245 Sum_probs=235.5
Q ss_pred cccCceeecCCCCEEE-EEEe---cCCCCeeeEEEEEC--CCCceEEeecccCCCCcccCcEEcC--------------C
Q 004971 321 HAFTPATSPGNNKFIA-VATR---RPTSSYRHIELFDL--VKNKFIELTRFVSPKTHHLNPFISP--------------D 380 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la-~~~~---~~g~~~~~l~l~dl--~tg~~~~l~~~~~~~~~~~~~~~Sp--------------d 380 (721)
.+....|++ .|..++ .... ..|..+..+++||+ .+++...-.....+...+...++++ .
T Consensus 64 ~~~~~~w~~-~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSA-LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHT-TTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHh-cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 344567888 886544 3321 12334457999999 8887432122233333344444443 3
Q ss_pred CCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeC----CcEEEEECCCCceEEEe
Q 004971 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY 455 (721)
Q Consensus 381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~----~~l~v~d~~~g~~~~l~ 455 (721)
+.+|++........ ....++++++.+... .+.........++|||||++|++.+. ..|++||+.+++.+.+.
T Consensus 143 ~~~l~~~s~~~~~~---~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQ---FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSS---CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCC---ccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 78888887764310 013688888865422 22223334456899999999999953 48999999999887776
Q ss_pred --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
.+.+..++|||||++|+++.. .++...||.++..++ ....+..+...+..++|||||++|++.+.+++
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~------~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALS------KTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred cCCCcccCEEEcCCCCEEEEEEe------cCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 456789999999999998763 345667777777664 66778777777788999999999999997666
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 613 (721)
..+||+||+.+++ ...++.+...+..++|||||++|++...+. +...|++||+.+++.+.++. + ..+..+
T Consensus 290 ~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~----g~~~i~~~d~~~~~~~~l~~--~-~~~~~~ 359 (415)
T 2hqs_A 290 RPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVLSS--T-FLDETP 359 (415)
T ss_dssp SCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECS----SCEEEEEEETTTCCEEECCC--S-SSCEEE
T ss_pred CcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcC----CceEEEEEECCCCCEEEecC--C-CCcCCe
Confidence 7799999999887 566765555567899999999999998763 45789999999998877653 2 367889
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
+|+|||++|++.+.+.+. ..||+||++++..++|+.+.+.+..|+|+|..
T Consensus 360 ~~spdg~~l~~~s~~~~~--------------~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EECTTSSEEEEEEEETTE--------------EEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred EEcCCCCEEEEEEcCCCc--------------cEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 999999999999887653 25999999999999999988889999999964
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=3.1e-26 Score=281.39 Aligned_cols=476 Identities=12% Similarity=0.059 Sum_probs=319.3
Q ss_pred eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971 60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA 139 (721)
Q Consensus 60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~ 139 (721)
...+..|...+...+|||||+ +|+ ++..+|.+.||... +++. ...
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~---------------------------~l~-s~~~d~~i~vw~~~--~~~~---~~~-- 652 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQ---------------------------RIA-SCGADKTLQVFKAE--TGEK---LLD-- 652 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSS---------------------------EEE-EEETTSCEEEEETT--TCCE---EEE--
T ss_pred eEEEecccccEEEEEECCCCC---------------------------EEE-EEeCCCeEEEEECC--CCCE---EEE--
Confidence 345678889999999999997 665 55678888888764 3431 111
Q ss_pred hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCC
Q 004971 140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVA 217 (721)
Q Consensus 140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~ 217 (721)
+. |.. .|. .+ .| +| ||++|+..+.++ .|...++.+++. ..+..+...
T Consensus 653 ~~~h~~-----~v~--~~-------~~-----s~--~~~~l~s~~~d~----------~v~vwd~~~~~~~~~~~~~~~~ 701 (1249)
T 3sfz_A 653 IKAHED-----EVL--CC-------AF-----SS--DDSYIATCSADK----------KVKIWDSATGKLVHTYDEHSEQ 701 (1249)
T ss_dssp ECCCSS-----CEE--EE-------EE-----CT--TSSEEEEEETTS----------EEEEEETTTCCEEEEEECCSSC
T ss_pred eccCCC-----CEE--EE-------EE-----ec--CCCEEEEEeCCC----------eEEEEECCCCceEEEEcCCCCc
Confidence 33 221 111 11 57 99 999988876553 566666666654 455566666
Q ss_pred ccccccCCCC--CEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcE
Q 004971 218 DFSPAVSPSG--KYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWI 292 (721)
Q Consensus 218 ~~~p~~SPDG--~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~ 292 (721)
....+|+|++ ..++..+.+ ..|.+|++.+++.......... ...|+||++++++ ...++.+
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d------------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s--~s~dg~v 767 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSND------------FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS--CSADGTL 767 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETT------------SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE--EESSSEE
T ss_pred EEEEEEecCCCceEEEEEeCC------------CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE--EECCCeE
Confidence 6777899954 455555433 4699999998886655433322 4589999987664 3337888
Q ss_pred EEEEEecCCCcceec--------------------------------------------ccc-ceEE-eCCCCCcccCce
Q 004971 293 SVYKVILPQTGLVST--------------------------------------------ESV-SIQR-VTPPGLHAFTPA 326 (721)
Q Consensus 293 ~l~~~~~~~~~~~~~--------------------------------------------~~~-~~~~-~~~~~~~~~~~~ 326 (721)
.+|++.......... ..+ .... ...+...+..++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 888653321000000 000 0000 012233445566
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 406 (721)
|+| +|+.++... .+..|.+||+.+++. +.....+...+..++|+|+|+.|+..+.++. +.+++
T Consensus 848 ~sp-~~~~l~~~~-----~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~---------v~vw~ 910 (1249)
T 3sfz_A 848 FSP-YDHLAVIAL-----SQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQT---------IRVWE 910 (1249)
T ss_dssp ECS-STTEEEEEC-----SSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEE
T ss_pred EcC-CCCEEEEEe-----CCCeEEEEEcCCCce--eeecCCCccceEEEEECCCCCEEEEEeCCCe---------EEEEE
Confidence 777 777666532 345699999998863 3344566777889999999999998776554 23333
Q ss_pred ccCC--------------------------------------CCcc-eecccCCCCceeCcCCCEEEEEe-CCcEEEEEC
Q 004971 407 IKSP--------------------------------------LPDI-SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS 446 (721)
Q Consensus 407 ~~~~--------------------------------------~~~~-~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~ 446 (721)
+... ...+ .........++|+|+|+.+++.. ++.|++|++
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~ 990 (1249)
T 3sfz_A 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990 (1249)
T ss_dssp HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET
T ss_pred ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 2110 0000 00111233468999999999885 789999999
Q ss_pred CCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC
Q 004971 447 DGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK 523 (721)
Q Consensus 447 ~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~ 523 (721)
.+++..... ...+..++|+|||++|+..+ .++.+.+|++... ....+..+...+..+.|+|+++
T Consensus 991 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd~~~~------~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSS-------EDSVIQVWNWQTG------DYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp TTTSCEEECCCCSSCCCCEEECSSSSCEEEEC-------SSSBEEEEETTTT------EEECCBCCSSCEEEEEECSSSE
T ss_pred CCCceeeecccCCCceEEEEECCCCCEEEEEc-------CCCEEEEEECCCC------ceEEEecCCCcEEEEEEcCCCc
Confidence 888755443 45788999999999999886 5788999986542 3444555566778899999876
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
++..+. +..|++||+.+++. ...+..+...+..++|+|||+.|+.++.++ .|++||+.+++......
T Consensus 1058 -l~~~~~---dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-------~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1058 -LLSWSF---DGTVKVWNVITGRI--ERDFTCHQGTVLSCAISSDATKFSSTSADK-------TAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp -EEEEES---SSEEEEEETTTTCC--CEEEECCSSCCCCEEECSSSSSCEEECCSS-------CCCEECSSSSSCSBCCC
T ss_pred -EEEEEC---CCcEEEEECCCCce--eEEEcccCCcEEEEEECCCCCEEEEEcCCC-------cEEEEECCCcceeeeec
Confidence 445554 67899999998885 566666677788999999999999888775 79999998887554433
Q ss_pred cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Ee---------ccCCCCCCCcee
Q 004971 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RL---------TQNSFEDGTPAW 673 (721)
Q Consensus 604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------t~~~~~~~~~~~ 673 (721)
++...+..++|||||++|+..+.++. |++||+.+++.. .+ ..+...+...+|
T Consensus 1125 -~h~~~v~~~~~s~dg~~lat~~~dg~-----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A 1125 -GHNGCVRCSAFSLDGILLATGDDNGE-----------------IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp -CCSSCEEEEEECSSSSEEEEEETTSC-----------------CCEEESSSSCCCCCCCCCC-------CCSCCCEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEeCCCE-----------------EEEEECCCCceEEEeccccccccccccCceEEEEEE
Confidence 26677889999999999998876653 888999877643 22 346667888999
Q ss_pred cCC
Q 004971 674 GPR 676 (721)
Q Consensus 674 sp~ 676 (721)
+|+
T Consensus 1187 s~d 1189 (1249)
T 3sfz_A 1187 SPD 1189 (1249)
T ss_dssp CTT
T ss_pred CCC
Confidence 997
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.8e-25 Score=274.67 Aligned_cols=470 Identities=13% Similarity=0.059 Sum_probs=322.1
Q ss_pred eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971 60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA 139 (721)
Q Consensus 60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~ 139 (721)
...+..|...+...+|+|++.. .+++++..+|.+.+|... .+. ... .
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~--------------------------~~l~sg~~d~~v~vwd~~--~~~----~~~-~ 738 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNH--------------------------LLLATGSNDFFLKLWDLN--QKE----CRN-T 738 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSC--------------------------CEEEEEETTSCEEEEETT--SSS----EEE-E
T ss_pred EEEEcCCCCcEEEEEEecCCCc--------------------------eEEEEEeCCCeEEEEECC--Ccc----hhh-e
Confidence 4556788888889999997540 455666788888888764 333 111 0
Q ss_pred hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEe-ecC----
Q 004971 140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRR-LTP---- 213 (721)
Q Consensus 140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~-lt~---- 213 (721)
+. +.. .+. .+ .| +| +|+.|+..+.++ .+...++.++.... +..
T Consensus 739 ~~~h~~-----~v~--~~-------~~-----sp--~~~~l~s~s~dg----------~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 739 MFGHTN-----SVN--HC-------RF-----SP--DDELLASCSADG----------TLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp ECCCSS-----CEE--EE-------EE-----CS--STTEEEEEESSS----------EEEEEEGGGTEEEEEEECCCCC
T ss_pred ecCCCC-----CEE--EE-------EE-----ec--CCCEEEEEECCC----------eEEEEeCCCCcccceecccccc
Confidence 22 221 111 11 56 99 999888877653 45555554543322 110
Q ss_pred ---------CCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccCC---cceeccCCeE
Q 004971 214 ---------YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENGG---WPCWVDESTL 280 (721)
Q Consensus 214 ---------~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~---~~~ws~dg~l 280 (721)
........+|||||++++.+. ...|++|+..++....... .... ...|+|++++
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-------------~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 854 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAA-------------KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEE-------------TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEc-------------CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE
Confidence 111334558999999999875 2478999998887655543 2222 4589999987
Q ss_pred EEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-
Q 004971 281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF- 359 (721)
Q Consensus 281 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~- 359 (721)
+++ ...++.+.+|..... . ....+..+...+..++|+| +|++++..+ .++.|.+||+.+...
T Consensus 855 l~~--~~~dg~v~vwd~~~~--~-------~~~~~~~h~~~v~~v~~sp-dg~~l~s~s-----~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 855 AVI--ALSQYCVELWNIDSR--L-------KVADCRGHLSWVHGVMFSP-DGSSFLTAS-----DDQTIRVWETKKVCKN 917 (1249)
T ss_dssp EEE--ECSSSCEEEEETTTT--E-------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEEHHHHHSC
T ss_pred EEE--EeCCCeEEEEEcCCC--c-------eeeecCCCccceEEEEECC-CCCEEEEEe-----CCCeEEEEEcccccee
Confidence 663 344788999954322 1 4555666766788999999 999988754 334589998653210
Q ss_pred -----------------------------EEeec-----ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 360 -----------------------------IELTR-----FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 360 -----------------------------~~l~~-----~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
..... .......+..++|+|+|+.+++...++. +.++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~---------i~i~ 988 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA---------IKII 988 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC---------CEEE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC---------EEEE
Confidence 00000 0011234567899999999998765554 5556
Q ss_pred eccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCC
Q 004971 406 NIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 406 ~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
++..+... +.........++|+|||++|+..+ ++.|.+|++.+++...+. ...+..+.|+|+++.++..
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~------ 1062 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS------ 1062 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE------
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE------
Confidence 65544221 112233456689999999999884 789999999998766554 5677889999988654443
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~ 560 (721)
.++.+.+|++.... ....+..+...+..++|+|||++|+..+. +..|++||+.+++. +..+..+...+
T Consensus 1063 --~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~--~~~l~~h~~~v 1130 (1249)
T 3sfz_A 1063 --FDGTVKVWNVITGR-----IERDFTCHQGTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSP--LHELKGHNGCV 1130 (1249)
T ss_dssp --SSSEEEEEETTTTC-----CCEEEECCSSCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSC--SBCCCCCSSCE
T ss_pred --CCCcEEEEECCCCc-----eeEEEcccCCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcce--eeeeccCCCcE
Confidence 46788888875543 55667777778899999999999998876 67899999998875 55666667778
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee--------ecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI--------QSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~--------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
..++|||||++|++++.++ .|++||+.+++..... ...+...+..++|||||++|+..+ +
T Consensus 1131 ~~~~~s~dg~~lat~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g-- 1198 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNG-------EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---G-- 1198 (1249)
T ss_dssp EEEEECSSSSEEEEEETTS-------CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---S--
T ss_pred EEEEECCCCCEEEEEeCCC-------EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---C--
Confidence 8999999999999998875 7999999887654322 012566788999999999998653 2
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecCC
Q 004971 633 AEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~ 676 (721)
.|.+||+.+++. ..+..+...+..++|+|+
T Consensus 1199 --------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~d 1229 (1249)
T 3sfz_A 1199 --------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229 (1249)
T ss_dssp --------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSS
T ss_pred --------------eEEEEECCCCceeeeeeccCCcccEEEECCC
Confidence 399999988765 455556666788999997
No 10
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.95 E-value=4.8e-26 Score=242.60 Aligned_cols=310 Identities=18% Similarity=0.212 Sum_probs=211.9
Q ss_pred ceEEeCCCCCccc-----CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971 311 SIQRVTPPGLHAF-----TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385 (721)
Q Consensus 311 ~~~~~~~~~~~~~-----~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~ 385 (721)
...+++.+..... .++||| ||++|+|.....+ ...|++||+++++.+++... +......+.|||||++|+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~--~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEG--RGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTS--SCEEEEEETTTCEEEECCCS--SCBCSSSCEECTTSSEEE
T ss_pred ceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeC--CCCCccceEEcCCCCEEE
Confidence 5666666543333 489999 9999999876433 34699999999987777632 233344689999999999
Q ss_pred EEEeeCCCCCCCCcceeEEEeccCCCCcc-eecccC-C--CCceeCcCCCEEEEEe-----------------------C
Q 004971 386 YHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFD-G--SFPSFSPKGDRIAFVE-----------------------F 438 (721)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~--~~~~~SpDG~~la~~~-----------------------~ 438 (721)
|...+ ..++++++.++.... ...... . ....++|||+.++... .
T Consensus 97 ~~~~~---------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 97 YVKDG---------RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp EEETT---------TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EEeCC---------CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 97743 247888877653321 111111 0 1123489999887541 2
Q ss_pred CcEEEEECCCCceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CC
Q 004971 439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NN 513 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~ 513 (721)
..|+++|+.+++.+.+. ...+..+.||| ||++|+|...+. .......||.++.++. ..+.+..... ..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP---HDLVDARMWLINEDGT----NMRKVKTHAEGESC 240 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---TTTSSCSEEEEETTSC----CCEESCCCCTTEEE
T ss_pred ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC---CCCCcceEEEEeCCCC----ceEEeeeCCCCccc
Confidence 57999999999988887 34567899999 999999987521 1223567888887764 6677776552 35
Q ss_pred cceEEccCCCEEEEEEeeCCce--eEEEEECCCCcccceEECcCCC---cCceeeEEccCCCEEEEEEccCCC--CCCce
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNP--GSGSF 586 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~--~l~~~d~~~g~~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~ 586 (721)
..++|||||++|+|.+...+.. .||+||+++++.+.+..+.... .....+.|||||++|++...+... ..+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 6789999999999998876554 4999999999843232222100 012345899999999987643100 01446
Q ss_pred eEEEEecCCCceEEeeecCCCC-----------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAG-----------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.||+||+++++.++++.. .. .+..++|||||++|++.+...+. .+||.+++..
T Consensus 321 ~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~--------------~~l~~~~l~~ 384 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVARH--DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK--------------PALYLATLPE 384 (388)
T ss_dssp EEEEEETTTTEEEEEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEEEECCG
T ss_pred EEEEEeccCCceEEeccc--cCcccccccccccCCCCccCCCCCCEEEEEecCCCc--------------eeEEEEECCh
Confidence 899999999988888753 23 46789999999999999987764 3799999875
Q ss_pred CC
Q 004971 656 SD 657 (721)
Q Consensus 656 ~~ 657 (721)
+.
T Consensus 385 ~~ 386 (388)
T 3pe7_A 385 SV 386 (388)
T ss_dssp GG
T ss_pred hc
Confidence 43
No 11
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.94 E-value=1.6e-24 Score=250.78 Aligned_cols=379 Identities=12% Similarity=0.052 Sum_probs=243.4
Q ss_pred ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC------c--ceeccCCe-EEEEeccC-
Q 004971 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG------W--PCWVDEST-LFFHRKSE- 287 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~------~--~~ws~dg~-l~~~~~~~- 287 (721)
...++|+|||++|+.. + ..|++|++.+|+.+++...... . ++|||||+ +++.....
T Consensus 19 ~~~~~w~~dg~~~~~~---~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ---E-----------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEEE---T-----------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEEc---C-----------CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence 4566999999887773 2 4799999999998777643321 2 57899997 55532211
Q ss_pred ---CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeec
Q 004971 288 ---EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR 364 (721)
Q Consensus 288 ---~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~ 364 (721)
......+| +.+..++ +..+++.+...+..++||| ||++|+|... ..|++||+.+++.++++.
T Consensus 85 ~~r~~~~~~~~-~~d~~~~-------~~~~l~~~~~~~~~~~~SP-dG~~la~~~~------~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 85 QWRHSYTASYD-IYDLNKR-------QLITEERIPNNTQWVTWSP-VGHKLAYVWN------NDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp CSSSCEEEEEE-EEETTTT-------EECCSSCCCTTEEEEEECS-STTCEEEEET------TEEEEESSTTSCCEECCS
T ss_pred eEEEccceEEE-EEECCCC-------cEEEcccCCCcceeeEECC-CCCEEEEEEC------CeEEEEECCCCceEEEcC
Confidence 01123455 3333333 4556666555678899999 9999999743 249999999998777653
Q ss_pred ccCCC----------------CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971 365 FVSPK----------------THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428 (721)
Q Consensus 365 ~~~~~----------------~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp 428 (721)
..... .....+.|||||++|+|.+.+... ..++......... ... .....+.+.+
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~------v~~~~~~~~~~~~--~~~-~~~~~~~yp~ 220 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE------VPLIEYSFYSDES--LQY-PKTVRVPYPK 220 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT------CCEEEEEECCSTT--CSS-CEEEEEECCB
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC------CceEEEEeecCCC--CCC-CcceeecCCC
Confidence 21111 112358899999999998876652 2344333222110 000 0011234444
Q ss_pred CCCEEEEEeCCcEEEEECCC---C---ceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 429 KGDRIAFVEFPGVYVVNSDG---S---NRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 429 DG~~la~~~~~~l~v~d~~~---g---~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
+|... ....|++||+++ + +...+. ...+..++|||||+.+++.... ......|+.++.
T Consensus 221 ~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r-----~~~~~~i~~~d~ 292 (740)
T 4a5s_A 221 AGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR-----IQNYSVMDICDY 292 (740)
T ss_dssp TTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES-----STTEEEEEEEEE
T ss_pred CcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC-----CCCEEEEEEEEC
Confidence 44321 112699999998 7 555554 1235688999999988876542 233445555555
Q ss_pred cCCCC---ccceEEc--ccCCCC-----CcceEEccCCCEEE-EEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 495 DDVDG---VSAVRRL--TTNGKN-----NAFPSVSPDGKWIV-FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 495 ~~~~~---~~~~~~l--~~~~~~-----~~~~~~SpDg~~l~-~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
.++.. ......+ ..+... ...++|||||++|+ +.+.++|..+||++|+++++ .++|+.+.+.+..+
T Consensus 293 ~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~~~lT~g~~~v~~~ 369 (740)
T 4a5s_A 293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---CTFITKGTWEVIGI 369 (740)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---CEESCCSSSCEEEE
T ss_pred CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---eEecccCCEEEEEE
Confidence 44300 0011222 112222 34799999999998 88888889999999999887 78899887665554
Q ss_pred EEccCCCEEEEEEcc--CCCCCCceeEEEEecCCCceE-Eeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971 564 NWSPDGEWIAFASDR--DNPGSGSFEMYLIHPNGTGLR-KLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~--~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~ 638 (721)
+++||++|+|.+.. .. .+..+||.+++++++.+ .++.. ........+.|||||+++++.....+.
T Consensus 370 -~~~d~~~i~f~~~~~~~~--~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~------- 439 (740)
T 4a5s_A 370 -EALTSDYLYYISNEYKGM--PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL------- 439 (740)
T ss_dssp -EEECSSEEEEEESCGGGC--TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS-------
T ss_pred -EEEeCCEEEEEEecCCCC--CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCC-------
Confidence 44779999999875 21 25679999999887655 45421 013456789999999999887765432
Q ss_pred CCCCCCCccEEEEEcCCCCeEEec
Q 004971 639 PHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
+.++++++++++..++.
T Consensus 440 -------p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 440 -------PLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp -------CEEEEEETTTTEEEEEE
T ss_pred -------CEEEEEECCCCcEEEEe
Confidence 36899998887665554
No 12
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.4e-24 Score=251.95 Aligned_cols=362 Identities=16% Similarity=0.220 Sum_probs=241.8
Q ss_pred ccccccCCCCCEEEEEec-CCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEE
Q 004971 218 DFSPAVSPSGKYTAVASY-GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYK 296 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~-~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~ 296 (721)
...++|||||++|++++. ++. .....||+|++++|+.+++....... +||+.+. ... .. .
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~-------~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~--~~~--~~---~- 99 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSD-------RNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLS--DEE--KA---R- 99 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSC-------TTEEEEEEEETTTCCEEEEECGGGTC-------------------------
T ss_pred CCCceEecCCCEEEEEeccCCC-------CcccEEEEEECCCCceeEccchhhcc----ccccccc--chh--hh---h-
Confidence 456799999999999875 321 01358999999999988776432211 3433211 000 00 0
Q ss_pred EecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC---ceEEeecccCCCCccc
Q 004971 297 VILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN---KFIELTRFVSPKTHHL 373 (721)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg---~~~~l~~~~~~~~~~~ 373 (721)
. ...++. ....+..++||| ||++|++... ..|++||+.++ +.+.+.. +...+.
T Consensus 100 ----~---------~~~~~~-~~~~v~~~~~Sp-Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~---~~~~~~ 155 (741)
T 2ecf_A 100 ----R---------ERQRIA-AMTGIVDYQWSP-DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTH---GEGFAT 155 (741)
T ss_dssp ---------------------CCEESCCCEECT-TSSEEEEEET------TEEEEEESSSCSTTSCCBCCC---SSSCEE
T ss_pred ----h---------hhhhhc-cccCcceeEECC-CCCEEEEEeC------CcEEEEECCCCCcceEEEccc---CCcccc
Confidence 0 011111 112457899999 9999999764 45999999988 6555432 345577
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccC-----------------CCCceeCcCCCEEEE
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFD-----------------GSFPSFSPKGDRIAF 435 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----------------~~~~~~SpDG~~la~ 435 (721)
.++|||||++|++... ..++++++.++.. .++..... ...++|||||++|++
T Consensus 156 ~~~~SPDG~~la~~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~ 225 (741)
T 2ecf_A 156 DAKLSPKGGFVSFIRG----------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY 225 (741)
T ss_dssp EEEECTTSSEEEEEET----------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred cccCCCCCCEEEEEeC----------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence 8999999999999753 2478888765421 11111111 256899999999999
Q ss_pred Ee-CC---------------------------------cEEEEECCC-CceEEEe-----ecCceeeEEcCCCCeEEEEe
Q 004971 436 VE-FP---------------------------------GVYVVNSDG-SNRRQVY-----FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 436 ~~-~~---------------------------------~l~v~d~~~-g~~~~l~-----~~~~~~~~~spdg~~la~~~ 475 (721)
.. +. .|++||+++ ++...+. ...+..+.| |||++|++..
T Consensus 226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 83 22 789999998 8877665 134568999 9999999886
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-C-C---CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-G-K---NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~-~---~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
.. .......|+.++..++ ....+... . . ....++|||||+ +++.+.+++..+||.++..++ .
T Consensus 305 ~~----~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~----~ 371 (741)
T 2ecf_A 305 QS----RDQKKLDLVEVTLASN----QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK----A 371 (741)
T ss_dssp EE----TTSSEEEEEEEETTTC----CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC----E
T ss_pred ec----ccCCeEEEEEEECCCC----ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC----e
Confidence 31 1235677788887664 44444332 2 1 345799999999 666766667778999997644 5
Q ss_pred EECcCCCcCceee-EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 551 HRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 551 ~~l~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..++.+...+..+ .|||||++|++...... .....||.++.+++..++++. ...+..++|||||++|++.....
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~--~~~~~l~~~~~~g~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~ 446 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFRAGIES--ARESQIYAVPLQGGQPQRLSK---APGMHSASFARNASVYVDSWSNN 446 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEEECSSC--TTCBEEEEEETTCCCCEECCC---SCSEEEEEECTTSSEEEEEEEET
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEEEeCCC--CceEEEEEEEcCCCCeeeccc---CCCceEEEECCCCCEEEEEecCC
Confidence 6777776666666 59999999998887531 114567777776766676653 34457899999999999887765
Q ss_pred CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
..+ +++|+++++++..+.|+.+
T Consensus 447 ~~p-------------~~~~l~~~~~~~~~~l~~~ 468 (741)
T 2ecf_A 447 STP-------------PQIELFRANGEKIATLVEN 468 (741)
T ss_dssp TEE-------------EEEEEEETTSCEEECSSCC
T ss_pred CCC-------------CeEEEEEcCCCeEEEeccC
Confidence 432 4799999988877777753
No 13
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=9.7e-25 Score=232.46 Aligned_cols=318 Identities=19% Similarity=0.184 Sum_probs=213.9
Q ss_pred eEEEEeCCCcceEeecCCCCCccc-----cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCc
Q 004971 197 AVYSTELKTGLTRRLTPYGVADFS-----PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW 271 (721)
Q Consensus 197 ~l~~v~~~~g~~~~lt~~~~~~~~-----p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~ 271 (721)
.+|.....++..++||.+...... |+|||||++|+|...+++ ..+||++++++|+.++++.
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~lt~----- 77 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDG---------PWNYYLLDLNTQVATQLTE----- 77 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTS---------SCEEEEEETTTCEEEECCC-----
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCC---------CceEEEEeCCCCceEEeee-----
Confidence 778766677788899877654444 899999999999876433 3578888887766543310
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
.+......+.||| ||++|+|.... ..|++
T Consensus 78 ---------------------------------------------~~~~~~~~~~~sp-dg~~l~~~~~~-----~~l~~ 106 (388)
T 3pe7_A 78 ---------------------------------------------GRGDNTFGGFLSP-DDDALFYVKDG-----RNLMR 106 (388)
T ss_dssp ---------------------------------------------SSCBCSSSCEECT-TSSEEEEEETT-----TEEEE
T ss_pred ---------------------------------------------CCCCCccceEEcC-CCCEEEEEeCC-----CeEEE
Confidence 0011122567999 99999997632 35999
Q ss_pred EECCCCceEEeecccCCCCcc--cCcEEcCCCCEEEEEEeeCCCC-------------CCCCcceeEEEeccCCCC-cce
Q 004971 352 FDLVKNKFIELTRFVSPKTHH--LNPFISPDSSRVGYHKCRGGST-------------REDGNNQLLLENIKSPLP-DIS 415 (721)
Q Consensus 352 ~dl~tg~~~~l~~~~~~~~~~--~~~~~Spdg~~l~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~-~~~ 415 (721)
||+++++.+.+.... .... ....++|||+.++......... .......+++.++.++.. .+.
T Consensus 107 ~d~~~g~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 107 VDLATLEENVVYQVP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EECCCCcceeeeech--hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 999999877665432 2222 2234599999988655332110 001125688888876632 222
Q ss_pred ecccCCCCceeCc-CCCEEEEEe-------CCcEEEEECCCCceEEEeec----CceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 416 LFRFDGSFPSFSP-KGDRIAFVE-------FPGVYVVNSDGSNRRQVYFK----NAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 416 ~~~~~~~~~~~Sp-DG~~la~~~-------~~~l~v~d~~~g~~~~l~~~----~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
........+.||| ||++|+|.. ...|+++++++++.+.+... .+..+.|||||++|+|.+.. ..
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~----~~ 260 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL----KG 260 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE----TT
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC----CC
Confidence 2222234689999 999999984 34899999999888887732 35678999999999988742 12
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCC------CCcceEEccCCCEEEEEEee------CCceeEEEEECCCCcccceE
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGK------NNAFPSVSPDGKWIVFRSTR------TGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~SpDg~~l~~~s~~------~g~~~l~~~d~~~g~~~~~~ 551 (721)
.....||.++..++ +.+.+..... .....+|||||++|++.... .+...||+||+++++ +.
T Consensus 261 ~~~~~l~~~d~~~g----~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~ 333 (388)
T 3pe7_A 261 SPDRFIYSADPETL----ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---QH 333 (388)
T ss_dssp CCCEEEEEECTTTC----CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE---EE
T ss_pred CCcceEEEEecCCC----ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---eE
Confidence 22345788887764 5555544322 13345899999999987643 456799999999987 56
Q ss_pred ECcCCCc-----------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 552 RLTEGPW-----------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 552 ~l~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.++.+.. .+..++|||||++|+|.+... +..+||++++..+
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~----g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH----GKPALYLATLPES 385 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----SSCEEEEEECCGG
T ss_pred EeccccCcccccccccccCCCCccCCCCCCEEEEEecCC----CceeEEEEECChh
Confidence 6665543 457899999999999999764 6678999998764
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=5.8e-23 Score=232.63 Aligned_cols=451 Identities=10% Similarity=0.053 Sum_probs=289.8
Q ss_pred ceeeeccceee-eccccCCC--CCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeee------cC
Q 004971 59 NEIKITDGESV-NFNGHFPS--PSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVY------YD 129 (721)
Q Consensus 59 ~~~~l~~~~~~-~~~~~~sp--dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~------~g 129 (721)
....+..|... +...+||| ||+ +|+ ++..+|.+.||.+... ..
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~---------------------------~l~-s~~~dg~v~vw~~~~~~~~~~~~~ 106 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQ---------------------------YLC-SGDESGKVIVWGWTFDKESNSVEV 106 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCC---------------------------EEE-EEETTSEEEEEEEEEEGGGTEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCC---------------------------EEE-EecCCCEEEEEeCCCCcccccccc
Confidence 45677888888 99999999 997 665 4557888889987522 11
Q ss_pred cccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce
Q 004971 130 TRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208 (721)
Q Consensus 130 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~ 208 (721)
. ..+ .+. +.. .+ ..+ .| +| ||++|+........ ...++.++ .+...
T Consensus 107 ~----~~~-~~~~~~~-----~v--~~~-------~~-----s~--~~~~l~~~~~~~~~------~~~v~~~d-~~~~~ 153 (615)
T 1pgu_A 107 N----VKS-EFQVLAG-----PI--SDI-------SW-----DF--EGRRLCVVGEGRDN------FGVFISWD-SGNSL 153 (615)
T ss_dssp E----EEE-EEECCSS-----CE--EEE-------EE-----CT--TSSEEEEEECCSSC------SEEEEETT-TCCEE
T ss_pred c----ccc-hhhcccc-----cE--EEE-------EE-----eC--CCCEEEEeccCCCC------ccEEEEEE-CCCcc
Confidence 1 100 022 111 11 111 57 99 99999988765321 13777777 34455
Q ss_pred EeecCCCCCccccccCCCCC-EEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccC---C--cceeccC-CeE
Q 004971 209 RRLTPYGVADFSPAVSPSGK-YTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENG---G--WPCWVDE-STL 280 (721)
Q Consensus 209 ~~lt~~~~~~~~p~~SPDG~-~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~---~--~~~ws~d-g~l 280 (721)
..+..+.......+|+|+|+ .++.+..+ ..|.+|++.+++...... +.. . ...|+|| +++
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCC------------CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE
Confidence 66666776677779999998 56665433 468899988877655443 222 2 3489999 887
Q ss_pred EEEeccCCCCcEEEEEEecCCCcceeccccceEEe-C---CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC
Q 004971 281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV-T---PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK 356 (721)
Q Consensus 281 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t 356 (721)
+++ ...++.+.+|.+.... ....+ . .+...+..+.|+ ++++|+... .+..|.+||+.+
T Consensus 222 l~~--~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~-----~d~~i~~wd~~~ 283 (615)
T 1pgu_A 222 VIT--VGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVG-----ADATIRVWDVTT 283 (615)
T ss_dssp EEE--EETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEE-----TTSEEEEEETTT
T ss_pred EEE--EeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc--CCCEEEEEc-----CCCcEEEEECCC
Confidence 663 3337888898543221 33333 2 555567778887 777777754 335699999998
Q ss_pred CceEEeecccC--CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC---------CCCc------------
Q 004971 357 NKFIELTRFVS--PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS---------PLPD------------ 413 (721)
Q Consensus 357 g~~~~l~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~------------ 413 (721)
++......... .........|+ +++.++....++.. .++++.. ....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i---------~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~ 353 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL---------NFYELGHDEVLKTISGHNKGITALTVNPLISG 353 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE---------EEEETTEEEEEEEECCCSSCEEEEETTTTEEE
T ss_pred CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE---------EEEECCCCcEEEEEeCCCCCEEEEEecCcEEE
Confidence 87543322110 01233445564 78888776554432 2222111 0000
Q ss_pred -----------------------------------------ceeccc-------CCCCceeCcCCCEEEEEeCCcEEEEE
Q 004971 414 -----------------------------------------ISLFRF-------DGSFPSFSPKGDRIAFVEFPGVYVVN 445 (721)
Q Consensus 414 -----------------------------------------~~~~~~-------~~~~~~~SpDG~~la~~~~~~l~v~d 445 (721)
+..... ....++++|||+.++......+.+|+
T Consensus 354 ~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (615)
T 1pgu_A 354 SYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433 (615)
T ss_dssp ETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence 000000 01123556666555555566677777
Q ss_pred CCCCceEEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCC-CCcEEEEEEEccCCCCccce-EEcccCCCCCcceEEccC
Q 004971 446 SDGSNRRQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASE-SSEVDIISINVDDVDGVSAV-RRLTTNGKNNAFPSVSPD 521 (721)
Q Consensus 446 ~~~g~~~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~SpD 521 (721)
+..++.... . ...+..++|+ ++.|+... . ++.+.+|++.... .. ..+..+...+..++|+||
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-------~~d~~i~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~ 499 (615)
T 1pgu_A 434 SFTGDIIKSVRLNSPGSAVSLS--QNYVAVGL-------EEGNTIQVFKLSDLE-----VSFDLKTPLRAKPSYISISPS 499 (615)
T ss_dssp TTTCCEEEEEECSSCEEEEEEC--SSEEEEEE-------TTTSCEEEEETTEEE-----EEEECSSCCSSCEEEEEECTT
T ss_pred ccCCceeeecccCCCceEEEEc--CCEEEEee-------cCCCeEEEEECCCcc-----ccccccCCccCceEEEEECCC
Confidence 765554332 2 4566778888 77888775 4 6788888875421 11 344455567888999999
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEcc----------CCCEEEEEEccCCCCCCceeEEE
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSP----------DGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~Sp----------DG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
|++|+..+. +..|++||+.+++. +..+.. +...+..++|+| ||+.|+.++.++ .|++
T Consensus 500 g~~l~~~~~---dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-------~i~i 567 (615)
T 1pgu_A 500 ETYIAAGDV---MGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-------NIFI 567 (615)
T ss_dssp SSEEEEEET---TSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-------CEEE
T ss_pred CCEEEEcCC---CCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-------cEEE
Confidence 999999887 78899999998875 555554 667788999999 999999998875 8999
Q ss_pred EecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 591 IHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 591 ~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
||+.++ +...... ++...+..++|+|||+ |+..+.++ .|++|+++.
T Consensus 568 w~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~-l~s~~~d~-----------------~v~iw~~~~ 614 (615)
T 1pgu_A 568 YSVKRPMKIIKALN-AHKDGVNNLLWETPST-LVSSGADA-----------------CIKRWNVVL 614 (615)
T ss_dssp EESSCTTCCEEETT-SSTTCEEEEEEEETTE-EEEEETTS-----------------CEEEEEEC-
T ss_pred EECCCCceechhhh-cCccceEEEEEcCCCC-eEEecCCc-----------------eEEEEeeec
Confidence 999887 4444333 3677889999999999 87766655 388888764
No 15
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.7e-24 Score=229.85 Aligned_cols=260 Identities=22% Similarity=0.351 Sum_probs=200.4
Q ss_pred CCCEEEEEEecCCC-CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC
Q 004971 331 NNKFIAVATRRPTS-SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS 409 (721)
Q Consensus 331 dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (721)
.+.+++|.....+. ....|++||++++..+.+.. +...+..++|||||++|++.+.++.. ..++++++.+
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~---~~~~v~~~~~Spdg~~la~~s~~~~~------~~i~~~d~~t 212 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLAN 212 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE---ESSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTT
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC---CCCcceeeEEcCCCCEEEEEEecCCC------cEEEEEECCC
Confidence 37889988765321 12679999998766555543 35567889999999999998865431 4688888876
Q ss_pred CCC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 410 PLP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 410 ~~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
+.. .+.........++|||||++|++.. ...|++||+.+++...+. ...+..+.|||||++|++.+.
T Consensus 213 g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~------ 286 (415)
T 2hqs_A 213 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD------ 286 (415)
T ss_dssp CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC------
T ss_pred CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC------
Confidence 532 2222223345689999999999873 456999999999887776 446778999999999999973
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM 562 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~ 562 (721)
.++...||.++..++ ....++.+......++|||||++|++.+..++...|++||+.+++ ...+..+. .+..
T Consensus 287 ~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~~-~~~~ 358 (415)
T 2hqs_A 287 QAGRPQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTF-LDET 358 (415)
T ss_dssp TTSSCEEEEEETTSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCSS-SCEE
T ss_pred CCCCcEEEEEECCCC----CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCCC-CcCC
Confidence 346678888888765 566776666566789999999999999876667899999999988 56676654 6688
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG 619 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG 619 (721)
++|+|||+.|++++.+. +...||+||++++..++++. +.+.+..++|||--
T Consensus 359 ~~~spdg~~l~~~s~~~----~~~~l~~~d~~g~~~~~l~~--~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQG----MGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSPYL 409 (415)
T ss_dssp EEECTTSSEEEEEEEET----TEEEEEEEETTSCCEEECCC--SSSEEEEEEECCCC
T ss_pred eEEcCCCCEEEEEEcCC----CccEEEEEECCCCcEEEeeC--CCCCCcCCcccccc
Confidence 99999999999999874 56689999999888777754 56788999999964
No 16
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5.7e-24 Score=246.86 Aligned_cols=316 Identities=15% Similarity=0.204 Sum_probs=221.6
Q ss_pred cccCceeecCCCCEEEEEEe-cCCCCeeeEEEEECCCCceEEeecccCCC----------------------CcccCcEE
Q 004971 321 HAFTPATSPGNNKFIAVATR-RPTSSYRHIELFDLVKNKFIELTRFVSPK----------------------THHLNPFI 377 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~-~~g~~~~~l~l~dl~tg~~~~l~~~~~~~----------------------~~~~~~~~ 377 (721)
.+..++||| ||++|++... ..+.....|++||+++++.+.+....... ..+..++|
T Consensus 38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 456889999 9999999875 32223457999999999876665432222 23678999
Q ss_pred cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---C-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE
Q 004971 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---L-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ 453 (721)
Q Consensus 378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~ 453 (721)
||||++|++... ..++++++.++ . ..+.........++|||||++|++.....|++||+.+++.++
T Consensus 117 SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 117 SPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 999999999764 24788887665 2 233333333456899999999999988899999999998877
Q ss_pred Eee-cC------------------ceeeEEcCCCCeEEEEecCCC-C-----------------------CCCCCcEEEE
Q 004971 454 VYF-KN------------------AFSTVWDPVREAVVYTSGGPE-F-----------------------ASESSEVDII 490 (721)
Q Consensus 454 l~~-~~------------------~~~~~~spdg~~la~~~~~~~-~-----------------------~~~~~~~~i~ 490 (721)
+.. +. +..+.|||||++|++.+.... . ........||
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 762 11 367999999999999864210 0 0112445778
Q ss_pred EEEccC-CCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCC-C--c--C
Q 004971 491 SINVDD-VDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEG-P--W--S 559 (721)
Q Consensus 491 ~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~-~--~--~ 559 (721)
.++..+ + ....+.. +......++| |||++|++..... ....|++||+.+++. ..+... . + .
T Consensus 267 ~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 267 VISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETSPTWVPL 338 (741)
T ss_dssp EECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEECSSCCCC
T ss_pred EEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---EEEEEcCCCCcCCc
Confidence 777765 4 4444442 2345667899 9999999987532 356899999999884 333321 1 1 2
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe-EECCCCCEEEEEEecCCCcCCCCCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP-YFSPDGKSIVFTSDYGGISAEPIST 638 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~~ 638 (721)
+..++|||||+ +++..... +...||.++++++ .+.++. +...+..+ .|||||++|++.+...+..
T Consensus 339 ~~~~~~spdg~-~~~~~~~~----g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~------ 404 (741)
T 2ecf_A 339 HNSLRFLDDGS-ILWSSERT----GFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESAR------ 404 (741)
T ss_dssp CSCCEECTTSC-EEEEECTT----SSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTT------
T ss_pred CCceEECCCCe-EEEEecCC----CccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCc------
Confidence 35799999999 55555442 5578999998776 666653 33445555 5999999999888765311
Q ss_pred CCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 639 PHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
..+||.++++++..++|+. ......++|||+
T Consensus 405 ------~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spd 435 (741)
T 2ecf_A 405 ------ESQIYAVPLQGGQPQRLSK-APGMHSASFARN 435 (741)
T ss_dssp ------CBEEEEEETTCCCCEECCC-SCSEEEEEECTT
T ss_pred ------eEEEEEEEcCCCCeeeccc-CCCceEEEECCC
Confidence 1258888888888889987 444567899996
No 17
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=8.9e-24 Score=244.51 Aligned_cols=326 Identities=13% Similarity=0.133 Sum_probs=212.8
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCC---cccCceeecCCCCEEEEEEecCCC---
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL---HAFTPATSPGNNKFIAVATRRPTS--- 344 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sp~dG~~la~~~~~~g~--- 344 (721)
.++|+|||++++. ..++.+.+|.+. .+. ....+..+.. .+..++||| ||++|++.......
T Consensus 21 ~~~~spdg~~~~~---~~dg~i~~~d~~--~g~-------~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 21 EAKWISDTEFIYR---EQKGTVRLWNVE--TNT-------STVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQH 87 (723)
T ss_dssp CCCBSSSSCBCCC---CSSSCEEEBCGG--GCC-------CEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSS
T ss_pred ccEEcCCCcEEEE---eCCCCEEEEECC--CCc-------EEEEeccccccccccceEEECC-CCCEEEEEecCccceee
Confidence 5689999996652 346766666332 221 2333333332 367899999 99999998654322
Q ss_pred -CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccC--
Q 004971 345 -SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFD-- 420 (721)
Q Consensus 345 -~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-- 420 (721)
....|++||+++++.+.+.....+...+..++|||||++|+|.+. ..++++++.++.. .++.....
T Consensus 88 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECCCBTTT
T ss_pred cceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecCCCCCc
Confidence 236799999999987666544333334677999999999999764 2477877765532 22211111
Q ss_pred -----------------CCCceeCcCCCEEEEEe-C----------------------------------CcEEEEECCC
Q 004971 421 -----------------GSFPSFSPKGDRIAFVE-F----------------------------------PGVYVVNSDG 448 (721)
Q Consensus 421 -----------------~~~~~~SpDG~~la~~~-~----------------------------------~~l~v~d~~~ 448 (721)
...++|||||++|++.. + ..|++||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 13589999999999984 1 1799999998
Q ss_pred Cce-EEEee--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-c-CCCCC----
Q 004971 449 SNR-RQVYF--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-T-NGKNN---- 513 (721)
Q Consensus 449 g~~-~~l~~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~-~~~~~---- 513 (721)
++. ..+.. ..+..+.|||||+.|++.... ......|+.++..++ ....+. . +....
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDATTG----VCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEETTTC----CEEEEEEEECSSCCCCCC
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeCCCC----cceEEEEeccCCEEeccC
Confidence 874 55542 245679999999988776532 234566777777654 433332 2 22222
Q ss_pred cceEEccCCCEEEEE-EeeCC----ceeEEEEE-CCCCcccceEECcCCCcCcee-eEEccCCCEEEEEEccCCCCCCce
Q 004971 514 AFPSVSPDGKWIVFR-STRTG----YKNLYIMD-AEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~-s~~~g----~~~l~~~d-~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
..++|||||++|++. +.+++ ..+||+|| ..+++......++.+...+.. ++|||||+.|++...+.. .+..
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL--PRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC--TTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCC--Ccce
Confidence 478999999999997 55555 55899999 555541113455554444343 699999999999887631 1345
Q ss_pred eEEEEecCCC-ceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 587 EMYLIHPNGT-GLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 587 ~i~~~d~~~~-~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.||.++..++ +.+.++.. .+...+..++|||||++|++.....+
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 6777777665 34444321 02345678999999999998766544
No 18
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=9.3e-24 Score=244.38 Aligned_cols=327 Identities=11% Similarity=0.071 Sum_probs=218.9
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCC-Ccc--cCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPK-THH--LNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~-~~~--~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
...+.|+| ||++++.. +..|++||+.+++...+....... ... ..+.|||||++|++............
T Consensus 19 ~~~~~w~~-dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECS-SSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccEECC-CCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 45889999 99766652 235999999999876664322111 112 22789999999999887654332233
Q ss_pred cceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC------------------
Q 004971 399 NNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN------------------ 458 (721)
Q Consensus 399 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~------------------ 458 (721)
...++++++.++. ..+.........++|||||++|||+.+..|+++++.+++.++++ .+.
T Consensus 91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 3567889987762 23332233345689999999999999999999999999988886 221
Q ss_pred --ceeeEEcCCCCeEEEEecCCC-C--------------------------CCCCCcEEEEEEEccC---CCCccceEEc
Q 004971 459 --AFSTVWDPVREAVVYTSGGPE-F--------------------------ASESSEVDIISINVDD---VDGVSAVRRL 506 (721)
Q Consensus 459 --~~~~~~spdg~~la~~~~~~~-~--------------------------~~~~~~~~i~~~~~~~---~~~~~~~~~l 506 (721)
...+.|||||++|+|.+.... . ......+.|+.++.++ +. ......+
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l 249 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQI 249 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEE
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC-cceEEEe
Confidence 124889999999999863211 0 0112344666666654 20 0023344
Q ss_pred cc------CCCCCcceEEccCCCEEEEEEeeCC-ceeEEEEECCCCc----ccceEEC--cCCCcC-----ceeeEEccC
Q 004971 507 TT------NGKNNAFPSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGE----GYGLHRL--TEGPWS-----DTMCNWSPD 568 (721)
Q Consensus 507 ~~------~~~~~~~~~~SpDg~~l~~~s~~~g-~~~l~~~d~~~g~----~~~~~~l--~~~~~~-----~~~~~~SpD 568 (721)
.. +...+..++|||||+.+++..++.. ...|+++|+++|+ ...+..+ ..+... ...++||||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 43 3345667899999998888877653 4589999999887 2212222 111111 247999999
Q ss_pred CCEEE-EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec--CCCcCCCCCCCCCCCCC
Q 004971 569 GEWIA-FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY--GGISAEPISTPHQYQPY 645 (721)
Q Consensus 569 G~~l~-~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~--~~~~~~~~~~~~~~~~~ 645 (721)
|++|+ +.+.+ ++..+||+||+++++.++++.. ...+..+ +++||+.|+|.+.. ... ..
T Consensus 330 G~~l~~~~s~~----~G~~~l~~~~~~~~~~~~lT~g--~~~v~~~-~~~d~~~i~f~~~~~~~~~------------~~ 390 (740)
T 4a5s_A 330 GNSFYKIISNE----EGYRHICYFQIDKKDCTFITKG--TWEVIGI-EALTSDYLYYISNEYKGMP------------GG 390 (740)
T ss_dssp SSEEEEEEECT----TSCEEEEEEETTCSSCEESCCS--SSCEEEE-EEECSSEEEEEESCGGGCT------------TC
T ss_pred CCEEEEEEEcC----CCceEEEEEECCCCceEecccC--CEEEEEE-EEEeCCEEEEEEecCCCCC------------ce
Confidence 99998 66655 3778999999999999988752 2233333 44679999999876 211 02
Q ss_pred ccEEEEEcCCCCeE-EeccC----CCCCCCceecCC
Q 004971 646 GEIFKIKLDGSDLK-RLTQN----SFEDGTPAWGPR 676 (721)
Q Consensus 646 ~~l~~~d~~~~~~~-~lt~~----~~~~~~~~~sp~ 676 (721)
.+||.+++++++.+ +||.. ......+.|||+
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTT
T ss_pred eEEEEEECCCCCcceeeccccCCCCCceEEEEECCC
Confidence 47999999988765 78843 234567899996
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.8e-22 Score=228.60 Aligned_cols=416 Identities=13% Similarity=0.034 Sum_probs=270.4
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCc-----ceEeecCCCCC-ccccccCC--CCCEEEEEecCCCCCCc
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG-----LTRRLTPYGVA-DFSPAVSP--SGKYTAVASYGNKGWDG 242 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g-----~~~~lt~~~~~-~~~p~~SP--DG~~la~~~~~~~~w~~ 242 (721)
+| ||++|++..+. .+..++++++ ....+..+... ....+||| ||++|+++..+
T Consensus 27 sp--dg~~l~~~~~~-----------~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d------ 87 (615)
T 1pgu_A 27 DP--TTNAIAYPCGK-----------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES------ 87 (615)
T ss_dssp ET--TTTEEEEEETT-----------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT------
T ss_pred CC--CCCEEEEecCC-----------eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC------
Confidence 99 99999998732 4555555555 55667677776 67779999 99999997643
Q ss_pred ccceeeeeEEEEEcCCC------ceeEEE--e-ccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccc
Q 004971 243 EVEMLSTDIYIFLTRDG------TQRVKI--V-ENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311 (721)
Q Consensus 243 ~~~~~~~~i~~~d~~~g------~~~~l~--~-~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~ 311 (721)
..|.+|++.++ +...+. . .... ...|+||++.++....+.+....++ +.... . .
T Consensus 88 ------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~-~~d~~-~-------~ 152 (615)
T 1pgu_A 88 ------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI-SWDSG-N-------S 152 (615)
T ss_dssp ------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE-ETTTC-C-------E
T ss_pred ------CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEE-EEECC-C-------c
Confidence 46788888655 222222 2 2222 4589999986654333323334444 22222 1 4
Q ss_pred eEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---cccCcEEcCC-CCEEEE
Q 004971 312 IQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---HHLNPFISPD-SSRVGY 386 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---~~~~~~~Spd-g~~l~~ 386 (721)
...+..+...+..++|+| +++ .++... .+..|.+||+.+++... ....+.. .+..++|+|+ ++.|+.
T Consensus 153 ~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQ-SRPMRSMTVG-----DDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp EEECCSCSSCEEEEEECS-SSSCEEEEEE-----TTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ceeeecCCccEEEEEECC-CCCcEEEEEe-----CCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEE
Confidence 455566666788899999 998 455432 34569999999887433 3344555 6788999999 999888
Q ss_pred EEeeCCCCCCCCcceeEEEeccCCCCcce------ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--e-
Q 004971 387 HKCRGGSTREDGNNQLLLENIKSPLPDIS------LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--F- 456 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~- 456 (721)
...++. +.++++..+..... ........+.|+ +++.|+..+ ++.|.+||+.+++..... .
T Consensus 225 ~~~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 225 VGSDRK---------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EETTCC---------EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred EeCCCe---------EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 765544 56666655422111 112223457899 999998885 678999999987754433 2
Q ss_pred ----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----------------------
Q 004971 457 ----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---------------------- 510 (721)
Q Consensus 457 ----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---------------------- 510 (721)
..+..+.|+ +++.++..+ .++.+.+|++.... ....+..+.
T Consensus 295 ~~~~~~~~~~~~~-~~~~l~~~~-------~~g~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 295 QQLGNQQVGVVAT-GNGRIISLS-------LDGTLNFYELGHDE-----VLKTISGHNKGITALTVNPLISGSYDGRIME 361 (615)
T ss_dssp TCGGGCEEEEEEE-ETTEEEEEE-------TTSCEEEEETTEEE-----EEEEECCCSSCEEEEETTTTEEEETTSCEEE
T ss_pred CcccCceeEEEeC-CCCeEEEEE-------CCCCEEEEECCCCc-----EEEEEeCCCCCEEEEEecCcEEECCCCeEEE
Confidence 344566775 888888876 35666666543210 111111100
Q ss_pred -----------CC----------------------------------CcceEEccCCCEEEE------------------
Q 004971 511 -----------KN----------------------------------NAFPSVSPDGKWIVF------------------ 527 (721)
Q Consensus 511 -----------~~----------------------------------~~~~~~SpDg~~l~~------------------ 527 (721)
.. ...++|+|||+.++.
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 01 112344455433332
Q ss_pred --------------------EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 528 --------------------RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 528 --------------------~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
.+. .+..|++||+.+++... ..+..+...+..++|+|||++|+.+..++ .
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~--~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-------~ 511 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLE--EGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG-------K 511 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEET--TTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS-------C
T ss_pred ecccCCCceEEEEcCCEEEEeec--CCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC-------e
Confidence 211 04567888887665211 44555666788999999999999998875 8
Q ss_pred EEEEecCCCceEEeeecCCCCCcCCeEECC----------CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC-
Q 004971 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSP----------DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS- 656 (721)
Q Consensus 588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp----------DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~- 656 (721)
|++||+.+++........+...+..++|+| ||++|+..+.++ .|++||++++
T Consensus 512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-----------------~i~iw~~~~~~ 574 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----------------NIFIYSVKRPM 574 (615)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----------------CEEEEESSCTT
T ss_pred EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-----------------cEEEEECCCCc
Confidence 999999988766543322667788999999 999999887765 3999999886
Q ss_pred -CeEEeccCCCCCCCceecCCcC
Q 004971 657 -DLKRLTQNSFEDGTPAWGPRFI 678 (721)
Q Consensus 657 -~~~~lt~~~~~~~~~~~sp~~l 678 (721)
....+..|...+...+|+|+.-
T Consensus 575 ~~~~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 575 KIIKALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp CCEEETTSSTTCEEEEEEEETTE
T ss_pred eechhhhcCccceEEEEEcCCCC
Confidence 3556777777888899999743
No 20
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=7.7e-24 Score=245.02 Aligned_cols=326 Identities=13% Similarity=0.129 Sum_probs=216.6
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---cccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---HHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
...++||| ||++++. . .+..|++||+++++...+... +.. .+..++|||||++|++...+........
T Consensus 19 ~~~~~~sp-dg~~~~~--~----~dg~i~~~d~~~g~~~~~~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 19 DPEAKWIS-DTEFIYR--E----QKGTVRLWNVETNTSTVLIEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCCBSS-SSCBCCC--C----SSSCEEEBCGGGCCCEEEECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred ccccEEcC-CCcEEEE--e----CCCCEEEEECCCCcEEEEecc--ccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 56789999 9995532 2 234699999999986655432 222 3677999999999999876554322222
Q ss_pred cceeEEEeccCCCC-cceeccc---CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeec---Cc------------
Q 004971 399 NNQLLLENIKSPLP-DISLFRF---DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFK---NA------------ 459 (721)
Q Consensus 399 ~~~l~~~~~~~~~~-~~~~~~~---~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~---~~------------ 459 (721)
...++++++.++.. .+..... ....++|||||++|+|.....|++|++.+++.+++... .+
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred eeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 25688888876643 1222111 14568999999999999889999999999988877622 22
Q ss_pred ------eeeEEcCCCCeEEEEecCCCCC-------------------------CCCCcEEEEEEEccCCCCccceEEccc
Q 004971 460 ------FSTVWDPVREAVVYTSGGPEFA-------------------------SESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 460 ------~~~~~spdg~~la~~~~~~~~~-------------------------~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
..++|||||++|++.+...... .......|+.++..+. .....+..
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~---~~~~~l~~ 246 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP---THDLEMMP 246 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS---CCCEECCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC---ceeEEeeC
Confidence 5799999999999987421000 0112346666666553 12355654
Q ss_pred C------CCCCcceEEccCCCEEEEEEeeC-CceeEEEEECCCCcccceEECc-C-CCcCc----eeeEEccCCCEEEEE
Q 004971 509 N------GKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHRLT-E-GPWSD----TMCNWSPDGEWIAFA 575 (721)
Q Consensus 509 ~------~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~g~~~~~~~l~-~-~~~~~----~~~~~SpDG~~l~~~ 575 (721)
+ ...+..++|||||++|++...+. ....|++||+.+++. ..+. . ....+ ..++|||||++|++.
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC---TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE---EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc---eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 3 23456689999999887776653 356899999999884 3332 1 11111 378999999999987
Q ss_pred -EccCCCCCCceeEEEEe-cCCCc---eEEeeecCCCCCcC-CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971 576 -SDRDNPGSGSFEMYLIH-PNGTG---LRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649 (721)
Q Consensus 576 -~~~~~~~~~~~~i~~~d-~~~~~---~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (721)
...........+||+|| ..+++ .+.++. ....+. .++|||||++|++.+.+.... ..+||
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~------------~~~l~ 389 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPR------------RRQLY 389 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTT------------CCEEE
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCCc------------ceEEE
Confidence 44320000156899999 56766 555653 122233 368999999999988764110 12588
Q ss_pred EEEcCCC-CeEEecc---CCCCCCCceecCC
Q 004971 650 KIKLDGS-DLKRLTQ---NSFEDGTPAWGPR 676 (721)
Q Consensus 650 ~~d~~~~-~~~~lt~---~~~~~~~~~~sp~ 676 (721)
.++++++ +.+.|+. +......++|||+
T Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (723)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred EEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence 8888775 5667775 3445677999996
No 21
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.92 E-value=4.5e-23 Score=219.96 Aligned_cols=311 Identities=18% Similarity=0.236 Sum_probs=207.1
Q ss_pred ceEEeCCCCCc-----ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971 311 SIQRVTPPGLH-----AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385 (721)
Q Consensus 311 ~~~~~~~~~~~-----~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~ 385 (721)
...+++..... ...++||| ||++|+|.....+ ...|+++|+++++.+.+... .......+.|||||++|+
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~Sp-dG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~ 96 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQ-DGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEG--KGDNTFGGFISTDERAFF 96 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTS--SCEEEEEETTTTEEEECCCS--SCBCTTTCEECTTSSEEE
T ss_pred ceEEEecCCCCccceeeecCcCCC-CCCEEEEEEecCC--CceEEEEECCCCcEEEeecC--CCCccccceECCCCCEEE
Confidence 34555544222 57889999 9999999876532 34699999999987666532 122233488999999999
Q ss_pred EEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCC-CC-------------------ceeCcCCCEEEEE------eC
Q 004971 386 YHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDG-SF-------------------PSFSPKGDRIAFV------EF 438 (721)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~-------------------~~~SpDG~~la~~------~~ 438 (721)
|..... .++++++.++... +....... .. +.|+|||+.+++. ..
T Consensus 97 ~~~~~~---------~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 97 YVKNEL---------NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp EEETTT---------EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred EEEcCC---------cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 976543 3777777655321 11111000 00 3567777766554 24
Q ss_pred CcEEEEECCCCceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCC
Q 004971 439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNN 513 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~ 513 (721)
..|+++|+.+++.+.+. ...+..+.|+| ||++|++.+.+. .......||.++.++. ..+.+.... ...
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGP---HDLVDARMWLVNEDGS----NVRKIKEHAEGESC 240 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---SSSCSCCCEEEETTSC----CCEESSCCCTTEEE
T ss_pred ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCC---CCCCCceEEEEECCCC----ceeEeeccCCCccc
Confidence 57999999999887776 34567899999 899999987421 1111256777777654 556666532 235
Q ss_pred cceEEccCCCEEEEEEeeCCcee--EEEEECCCCcccceEECcCCCcCceeeEEcc-CCCEEEEEEccCC---------C
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP-DGEWIAFASDRDN---------P 581 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~--l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~---------~ 581 (721)
..++|||||++|++.+...+... |++||+.+++ ...+...... . +.|+| ||+.|++...... .
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECCSE-E-EEEECSSSSEEEEEECCC----------C
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccc
Confidence 56899999999999987665555 9999999887 4444432222 3 89999 9998887653200 0
Q ss_pred CCCceeEEEEecCCCceEEeeecCCCC-----------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971 582 GSGSFEMYLIHPNGTGLRKLIQSGSAG-----------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650 (721)
Q Consensus 582 ~~~~~~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (721)
..+...||+||+.+++.++++.. .. ....+.|||||++|++.+.+.+. .+||.
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--------------~~l~~ 379 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQKLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV--------------PAIYI 379 (396)
T ss_dssp CCCCCEEEEEETTTTBCCEEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEE
T ss_pred cCCCCcEEEEecccCceEEccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCC--------------ceEEE
Confidence 01345899999999887777653 22 25678999999999999876653 36999
Q ss_pred EEcCCCCeEEecc
Q 004971 651 IKLDGSDLKRLTQ 663 (721)
Q Consensus 651 ~d~~~~~~~~lt~ 663 (721)
+++++++.+.+..
T Consensus 380 ~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 380 ADVPESYKHLEHH 392 (396)
T ss_dssp EECCTTCC-----
T ss_pred EEEcccccccccc
Confidence 9999887765543
No 22
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=2.8e-22 Score=235.18 Aligned_cols=450 Identities=12% Similarity=0.063 Sum_probs=288.6
Q ss_pred eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971 60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA 139 (721)
Q Consensus 60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~ 139 (721)
.+.+..|...+...+|||||+ +|+.. ..+|.+.||.+. .+.. ..+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~---------------------------~la~~-~~~g~v~iwd~~--~~~~---~~~-- 50 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP---------------------------WVLTT-LYSGRVEIWNYE--TQVE---VRS-- 50 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS---------------------------EEEEE-ETTSEEEEEETT--TTEE---EEE--
T ss_pred ceeeecCCCceEEEEECCCCC---------------------------EEEEE-eCCCEEEEEECC--CCce---EEE--
Confidence 466778888899999999998 77655 467888888754 3431 122
Q ss_pred hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCC
Q 004971 140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVA 217 (721)
Q Consensus 140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~ 217 (721)
+. +.. ... .+ .| +| ||++|++.+..+ .|...+..+++. ..+..+...
T Consensus 51 ~~~~~~---~v~----~~-------~~-----s~--~~~~l~~~~~dg----------~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 51 IQVTET---PVR----AG-------KF-----IA--RKNWIIVGSDDF----------RIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp EECCSS---CEE----EE-------EE-----EG--GGTEEEEEETTS----------EEEEEETTTCCEEEEEECCSSC
T ss_pred EecCCC---cEE----EE-------EE-----eC--CCCEEEEEeCCC----------eEEEEECCCCcEEEEEecCCCC
Confidence 33 221 111 11 68 99 999999887653 566666666554 556667777
Q ss_pred ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCc-eeEEEe-ccCC--cceecc-CCeEEEEeccCCCCcE
Q 004971 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGT-QRVKIV-ENGG--WPCWVD-ESTLFFHRKSEEDDWI 292 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~-~~~l~~-~~~~--~~~ws~-dg~l~~~~~~~~~g~~ 292 (721)
....+|+|||++|++++.+ ..|.+|++.++. ...... +... ...|+| |+.++++ ...++.+
T Consensus 100 v~~~~~s~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~v 165 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDD------------LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS--GCLDRTV 165 (814)
T ss_dssp EEEEEECSSSSEEEEEETT------------SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEE
T ss_pred EEEEEEeCCCCEEEEEcCC------------CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE--EeCCCeE
Confidence 7777999999999987643 468889988763 333332 2222 458999 7776663 3337888
Q ss_pred EEEEEecCCCcceeccccceEEe-CCCCCcccCceeecC-CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC
Q 004971 293 SVYKVILPQTGLVSTESVSIQRV-TPPGLHAFTPATSPG-NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT 370 (721)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~-dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~ 370 (721)
.+|.+.... ....+ ..+...+..++|+|. ++.+|+... .++.|.+||+.+++.. .....+..
T Consensus 166 ~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~--~~~~~~~~ 229 (814)
T 3mkq_A 166 KVWSLGQST---------PNFTLTTGQERGVNYVDYYPLPDKPYMITAS-----DDLTIKIWDYQTKSCV--ATLEGHMS 229 (814)
T ss_dssp EEEETTCSS---------CSEEEECCCTTCCCEEEECCSTTCCEEEEEC-----TTSEEEEEETTTTEEE--EEEECCSS
T ss_pred EEEECCCCc---------ceeEEecCCCCCEEEEEEEECCCCCEEEEEe-----CCCEEEEEECCCCcEE--EEEcCCCC
Confidence 899653322 22333 233345667777761 566776632 3456999999988743 33344566
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCE--EEEEeCCcEEEEEC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDR--IAFVEFPGVYVVNS 446 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~--la~~~~~~l~v~d~ 446 (721)
.+..++|+|+|+.|+....++. +.++++...... +.........++|+|+|+. ++...+..+.+|++
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~---------v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGT---------LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSC---------EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 7888999999999888765554 556666543211 1111223345789999974 55557888999987
Q ss_pred CCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-------CCccceEEcccCCCCCcceEEc
Q 004971 447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-------DGVSAVRRLTTNGKNNAFPSVS 519 (721)
Q Consensus 447 ~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~S 519 (721)
..+. ....++|+|+.++..... .....++....... ........+......+..++|+
T Consensus 301 ~~~~---------~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (814)
T 3mkq_A 301 GNDE---------PTLSLDPVGKLVWSGGKN------AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS 365 (814)
T ss_dssp SCCS---------CCEEECSSSEEEEECCTT------SCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC
T ss_pred CCCC---------ceeEECCCCCEEEECccc------ccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC
Confidence 5543 356788999888875421 11222222221100 0001223333444556789999
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|||++|++.+ +..+++|++.... ... ...+..++|||||+.|++...++ .|.+|+.-
T Consensus 366 pdg~~la~~~----~~~~~i~~~~~~~---~~~----~~~i~~~~~spdg~~la~~~~~g-------~v~l~~~~----- 422 (814)
T 3mkq_A 366 PNGRFVTVVG----DGEYVIYTALAWR---NKA----FGKCQDFVWGPDSNSYALIDETG-------QIKYYKNF----- 422 (814)
T ss_dssp TTSSEEEEEE----TTEEEEEETTTTE---EEE----EEECSEEEECTTSSCEEEECTTC-------CEEEEETT-----
T ss_pred CCCCEEEEec----CCEEEEEECcccc---ccC----CCceEEEEEeCCCCeEEEEeCCC-------cEEEEECC-----
Confidence 9999999887 4678899976443 111 12346899999999999888764 67777521
Q ss_pred EeeecCCCCCcCCeEECCCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE-eccCCCCCCCceecC
Q 004971 600 KLIQSGSAGRANHPYFSPDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR-LTQNSFEDGTPAWGP 675 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-lt~~~~~~~~~~~sp 675 (721)
. ++...+..+.|+||| ++|++.+.++ .|++||+.+++... +..+.. ...|+|
T Consensus 423 --~--~~~~~v~~~~~s~dg~~~~~l~~~~~d~-----------------~v~~~d~~~~~~~~~~~~~~~---~v~~s~ 478 (814)
T 3mkq_A 423 --K--EVTSWSVPMHSAIDRLFSGALLGVKSDG-----------------FVYFFDWDNGTLVRRIDVNAK---DVIWSD 478 (814)
T ss_dssp --E--ECTTCCCCCSSCCCEEECSSSEEEEETT-----------------EEEEECTTTCCEEEEESSCEE---EEEECT
T ss_pred --C--CccceEEcCCcCccceecceEEEEecCC-----------------EEEEEECCcCcEEEEEecCCC---EEEEcC
Confidence 1 144567788999999 5777766654 49999998887654 443332 789999
Q ss_pred C
Q 004971 676 R 676 (721)
Q Consensus 676 ~ 676 (721)
+
T Consensus 479 d 479 (814)
T 3mkq_A 479 N 479 (814)
T ss_dssp T
T ss_pred C
Confidence 6
No 23
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=239.41 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=223.6
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCC----CcccCceeecCCCCEEEEEEecCC---
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPG----LHAFTPATSPGNNKFIAVATRRPT--- 343 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sp~dG~~la~~~~~~g--- 343 (721)
.++|+|||++++. . .++.+.+|.+ . ++ +..+++.+. ..+..++||| ||++|++.....+
T Consensus 20 ~~~~s~dg~~~~~--~-~d~~i~~~~~--~-~g-------~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWISGQEYLHQ--S-ADNNIVLYNI--E-TG-------QSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESSSSEEEEE--C-TTSCEEEEES--S-SC-------CEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred ccEECCCCeEEEE--c-CCCCEEEEEc--C-CC-------cEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence 5689999987663 2 2666666632 2 22 455555432 1367899999 9999999875321
Q ss_pred -CCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecc
Q 004971 344 -SSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFR 418 (721)
Q Consensus 344 -~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 418 (721)
+.+..|++||+++++. ..+. ..+..++|||||++|+|... ..++++++.++.. .++...
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~----------~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQ----------NNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEET----------TEEEEESSTTSCCEECCCCC
T ss_pred eecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEEC----------CeEEEEeCCCCCcEEEecCC
Confidence 2356799999999875 3332 34678999999999999742 3578887765422 111111
Q ss_pred c-------------------CCCCceeCcCCCEEEEEe-C-C---------------------------------cEEEE
Q 004971 419 F-------------------DGSFPSFSPKGDRIAFVE-F-P---------------------------------GVYVV 444 (721)
Q Consensus 419 ~-------------------~~~~~~~SpDG~~la~~~-~-~---------------------------------~l~v~ 444 (721)
. ....++|||||++|++.. + . .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 0 113689999999999984 1 1 78899
Q ss_pred ECCCCceE---EEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE----ccCCCCccceEEcc--
Q 004971 445 NSDGSNRR---QVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN----VDDVDGVSAVRRLT-- 507 (721)
Q Consensus 445 d~~~g~~~---~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~l~-- 507 (721)
|+++++.. .+. ...+..++||||++.++.... .......||.++ ..++ ....+.
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-----~~~~~~~l~~~d~~~~~~~g----~~~~~~~~ 300 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-----RVQNVSVLSICDFREDWQTW----DCPKTQEH 300 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-----SSTTEEEEEEEEECSSSSSE----ECCGGGEE
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-----cccCeEEEEEEcccCCCCCC----ceEEEEec
Confidence 99988742 332 234578999999765554332 124456777777 5443 333343
Q ss_pred ---cCCCCCc-----ceEEccCCCEEEEE-EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 508 ---TNGKNNA-----FPSVSPDGKWIVFR-STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 508 ---~~~~~~~-----~~~~SpDg~~l~~~-s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
.+...+. .++|||||+.|++. +..++..+||++|+.+++ ...++.+...+..+.++ ||++|+|....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 2233333 78999999998885 556677899999999887 67888776666677777 99999999875
Q ss_pred --CCCCCCceeEEEEecCCC--ceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 579 --DNPGSGSFEMYLIHPNGT--GLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 579 --~~~~~~~~~i~~~d~~~~--~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
.. .+...||.++++++ +.+.++.. ++...+..+.|||||++|++....... +.+++||
T Consensus 377 ~~~~--~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~--------------p~~~l~d 440 (719)
T 1z68_A 377 FEEY--PGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGI--------------PISTLHD 440 (719)
T ss_dssp GGGC--TTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSS--------------CEEEEEC
T ss_pred CCCC--CceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCC--------------CeEEEEE
Confidence 10 14568899888666 34555421 022345678999999999887654432 2588899
Q ss_pred cCCCCeEEecc
Q 004971 653 LDGSDLKRLTQ 663 (721)
Q Consensus 653 ~~~~~~~~lt~ 663 (721)
+++++..+++.
T Consensus 441 ~~~g~~~~~~~ 451 (719)
T 1z68_A 441 GRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCCCEEEEee
Confidence 98887655554
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.4e-22 Score=231.46 Aligned_cols=464 Identities=12% Similarity=0.078 Sum_probs=277.9
Q ss_pred eccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchhhhc
Q 004971 63 ITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQ 142 (721)
Q Consensus 63 l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~~ 142 (721)
..+|...+...+|||||+ +|| ++..+|.+.||... +++ . . .+.
T Consensus 13 ~~gh~~~V~~lafspdg~---------------------------~lA-sgs~Dg~I~lw~~~--~~~----~-~--~~~ 55 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQN---------------------------LLA-IATVTGEVHIYGQQ--QVE----V-V--IKL 55 (902)
T ss_dssp EEECSSCEEEEEEETTTT---------------------------EEE-EEETTSEEEEECST--TCE----E-E--EEC
T ss_pred ccCCCCCcEEEEECCCCC---------------------------EEE-EEeCCCEEEEEeCC--CcE----E-E--EEc
Confidence 346677788999999997 554 56688888888542 222 1 1 111
Q ss_pred cccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCCCCCcccc
Q 004971 143 HGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPYGVADFSP 221 (721)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~~~~~~~p 221 (721)
.. ...| ..+ .| +| |++|+..+.++ .|...++.+++.. .+ .+.......
T Consensus 56 ~~---~~~V--~~l-------~f-----sp---g~~L~S~s~D~----------~v~lWd~~~~~~~~~~-~~~~~V~~v 104 (902)
T 2oaj_A 56 ED---RSAI--KEM-------RF-----VK---GIYLVVINAKD----------TVYVLSLYSQKVLTTV-FVPGKITSI 104 (902)
T ss_dssp SS---CCCE--EEE-------EE-----ET---TTEEEEEETTC----------EEEEEETTTCSEEEEE-ECSSCEEEE
T ss_pred CC---CCCE--EEE-------EE-----cC---CCEEEEEECcC----------eEEEEECCCCcEEEEE-cCCCCEEEE
Confidence 11 0111 111 56 88 77777766553 4555566665543 44 344455666
Q ss_pred ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe------------ccC--CcceeccCC-eEEEEecc
Q 004971 222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV------------ENG--GWPCWVDES-TLFFHRKS 286 (721)
Q Consensus 222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~------------~~~--~~~~ws~dg-~l~~~~~~ 286 (721)
+|+|||++|+....+ ..|.+|++.+++...... +.+ ...+|+|++ .+++. .
T Consensus 105 ~~sp~g~~l~sgs~d------------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~--g 170 (902)
T 2oaj_A 105 DTDASLDWMLIGLQN------------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI--S 170 (902)
T ss_dssp ECCTTCSEEEEEETT------------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE--E
T ss_pred EECCCCCEEEEEcCC------------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE--E
Confidence 899999999987644 468999998877532211 111 145899974 45453 3
Q ss_pred CCCCcEEEEEEecCCCcceeccccceEEeCCC------------------CCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPP------------------GLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
..++.+ +|.+.... ....+..+ ...+..++|+| ||++|+... .+..
T Consensus 171 ~~dg~v-lWd~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs-----~Dg~ 234 (902)
T 2oaj_A 171 YEYVTL-TYSLVENE---------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIH-----EDNS 234 (902)
T ss_dssp CSSCEE-EEETTTTE---------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEE-----TTCC
T ss_pred eCCCcE-EEECCCCc---------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEE-----CCCe
Confidence 347888 99643221 22222221 23467889999 999988854 3456
Q ss_pred EEEEECCCCceEEeecc---cC-------------CCCcccCcEEc----CCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 349 IELFDLVKNKFIELTRF---VS-------------PKTHHLNPFIS----PDSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~---~~-------------~~~~~~~~~~S----pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
|++||+.+++....... .. +...+..++|+ ||+..+++......... ...+.++++.
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~---~~~v~~~~~~ 311 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD---NQSLTMIDLG 311 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS---CCCEEEEEEE
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC---CceEEEEecC
Confidence 99999999875432111 00 12246678885 55555555443321100 0123333321
Q ss_pred -CCC----------------Ccceecc----cCCCCceeCc----------CCCEEEEE-eCCcEEEEECCCCceEEE--
Q 004971 409 -SPL----------------PDISLFR----FDGSFPSFSP----------KGDRIAFV-EFPGVYVVNSDGSNRRQV-- 454 (721)
Q Consensus 409 -~~~----------------~~~~~~~----~~~~~~~~Sp----------DG~~la~~-~~~~l~v~d~~~g~~~~l-- 454 (721)
.+. ....... .....+.+.+ |+..++.. .++.|++|++.++....-
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 000 0000110 0111122222 34455555 468899999876632110
Q ss_pred ----------------------------------------e--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 455 ----------------------------------------Y--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 455 ----------------------------------------~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
. ...+..++|+|||+.|+..+ .++.+++|++
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-------~DgtVrlWd~ 464 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-------SNGSVRIYDA 464 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-------TTSEEEEEES
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec-------CCCcEEEEEC
Confidence 0 01223467899999999887 6799999998
Q ss_pred EccCCCCccceE--Ecc-----cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------------
Q 004971 493 NVDDVDGVSAVR--RLT-----TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------------ 547 (721)
Q Consensus 493 ~~~~~~~~~~~~--~l~-----~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------------ 547 (721)
..... ...... .+. .+...+..++|||||++|+..+. +..|.+|++.+++.
T Consensus 465 ~~g~~-~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~---DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 540 (902)
T 2oaj_A 465 SHGDI-QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE---TGDVVLFKYEVNQFYSVENRPESGDLEMNFRR 540 (902)
T ss_dssp SCCTT-TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET---TSCEEEEEEEECCC---------------CCS
T ss_pred CCccc-cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec---CcEEEEEEecCccccCccccCCCcccceeeee
Confidence 65421 000011 111 34457888999999999999987 77899999876631
Q ss_pred -------------------------cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 548 -------------------------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 548 -------------------------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
..+..+..+...+..++||||| .||.++.++ .|.+||+.++......
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~-------tv~lwd~~~~~~~~~~ 612 (902)
T 2oaj_A 541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG-------SLMLIDRRGPAIIYME 612 (902)
T ss_dssp CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS-------EEEEEETTTTEEEEEE
T ss_pred ccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC-------cEEEEECCCCeEEEEe
Confidence 1133445566778999999999 999998875 8999999887543211
Q ss_pred e-----cCCCCCcCCeEEC-----CCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc---CCCC-eEEecc
Q 004971 603 Q-----SGSAGRANHPYFS-----PDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL---DGSD-LKRLTQ 663 (721)
Q Consensus 603 ~-----~~~~~~~~~~~~S-----pDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~-~~~lt~ 663 (721)
. .+|...+.+++|| ||| ++|+..+.++ .|.+||+ .+|+ ...+..
T Consensus 613 ~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~-----------------tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG-----------------EVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS-----------------EEEEEEEEECGGGCEEEEEEE
T ss_pred ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC-----------------cEEEEEEecCCCCcEEEEecC
Confidence 1 1366778999999 986 7887777665 3888887 5554 345544
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.91 E-value=4.9e-22 Score=205.64 Aligned_cols=274 Identities=12% Similarity=0.069 Sum_probs=206.5
Q ss_pred CCCCCcccCceeecCC----CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 316 TPPGLHAFTPATSPGN----NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~d----G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
..+...+..++|+| + ++.|+..+ .+..|.+||+.+++........++...+..+.|++++..++..+.++
T Consensus 29 ~~H~~~V~~v~~~~-~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 29 QAHDDAIWSVAWGT-NKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp TSSSSCEEEEEEC--------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ccCCCcEEEEEEec-CCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 35566778889987 6 45666643 44569999998776544444566777888999999999888766554
Q ss_pred CCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971 392 GSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWD 465 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~s 465 (721)
. +.++++..+.. .+.........++|+|||++|+... ++.+.+|++.+++..... ...+..++|+
T Consensus 103 ~---------i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 103 H---------IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp E---------EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred c---------EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence 4 56666655421 1111223345689999999999884 788999999988754433 3467889999
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
|||++|+..+ .++.+.||++.... ....+..+...+..++|+|||++|+..+. +..|++||+.++
T Consensus 174 pdg~~lasg~-------~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~---dg~i~iwd~~~~ 238 (321)
T 3ow8_A 174 PDGKYLASGA-------IDGIINIFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASD---DGYIKIYDVQHA 238 (321)
T ss_dssp TTSSEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECT---TSCEEEEETTTC
T ss_pred CCCCEEEEEc-------CCCeEEEEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcC---CCeEEEEECCCc
Confidence 9999999987 56889998875432 45566667777889999999999998876 778999999987
Q ss_pred cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
+. ...+..+...+..++|+|||++|+.++.++ .|.+||+.+++....... +...+..++|+|||++|+..
T Consensus 239 ~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 239 NL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDK-------SVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp CE--EEEECCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred ce--eEEEcCCCCceEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEE
Confidence 75 566666777788999999999999998875 899999998876655433 67788999999999999887
Q ss_pred EecC
Q 004971 626 SDYG 629 (721)
Q Consensus 626 ~~~~ 629 (721)
+.++
T Consensus 309 ~~d~ 312 (321)
T 3ow8_A 309 GDDQ 312 (321)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 7665
No 26
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=7.3e-22 Score=227.76 Aligned_cols=293 Identities=18% Similarity=0.272 Sum_probs=208.0
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+..++||| | +++++... ..|++||+.+++...+... ...+..++|||||++|++.. + .
T Consensus 83 ~v~~~~~sp-d-~~~~~~~~------~~i~~~d~~~~~~~~l~~~---~~~~~~~~~SpdG~~la~~~-~---------~ 141 (706)
T 2z3z_A 83 PSFRTLDAG-R-GLVVLFTQ------GGLVGFDMLARKVTYLFDT---NEETASLDFSPVGDRVAYVR-N---------H 141 (706)
T ss_dssp CCEEEEETT-T-TEEEEEET------TEEEEEETTTTEEEEEECC---TTCCTTCEECTTSSEEEEEE-T---------T
T ss_pred CceeEEECC-C-CeEEEEEC------CEEEEEECCCCceEEccCC---cccccCCcCCCCCCEEEEEE-C---------C
Confidence 467889999 9 78888642 4599999999876665432 45577899999999999953 2 3
Q ss_pred eeEEEeccC-----CCC-cceecccC---------------CCCceeCcCCCEEEEEe----------------------
Q 004971 401 QLLLENIKS-----PLP-DISLFRFD---------------GSFPSFSPKGDRIAFVE---------------------- 437 (721)
Q Consensus 401 ~l~~~~~~~-----~~~-~~~~~~~~---------------~~~~~~SpDG~~la~~~---------------------- 437 (721)
.++++++.+ +.. .++..... ...+.|||||++|++..
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 588888876 422 22221111 25689999999999984
Q ss_pred ------------CCcEEEEECCCCceEEEee-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 438 ------------FPGVYVVNSDGSNRRQVYF-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 438 ------------~~~l~v~d~~~g~~~~l~~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
...|++||+++++...+.. ..+..+.|||||++|++.+.. .......|+.++..++
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~~~g--- 294 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDAETG--- 294 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEETTTC---
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEECCCC---
Confidence 2469999999998766651 245689999999999997632 1234566777776552
Q ss_pred cceEEccc--CCC---CCcceEEcc--CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee-eEEccCCCEE
Q 004971 501 SAVRRLTT--NGK---NNAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWI 572 (721)
Q Consensus 501 ~~~~~l~~--~~~---~~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l 572 (721)
...+.+.. ... ....++||| ||++| +.+.+++..+||.++..++. +..++.+...+.. ++|||||++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~v~~~~~~spdg~~l 370 (706)
T 2z3z_A 295 RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRDGWNHLYLYDTTGRL---IRQVTKGEWEVTNFAGFDPKGTRL 370 (706)
T ss_dssp CEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTTSSCEEEEEETTSCE---EEECCCSSSCEEEEEEECTTSSEE
T ss_pred ceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccCCccEEEEEECCCCE---EEecCCCCeEEEeeeEEcCCCCEE
Confidence 12333322 111 235689999 99855 55556667789999977655 7788877666555 7999999999
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
++...... .....||.+|+++++.+.++ +...+..++|||||++|++....... +++||+||
T Consensus 371 ~~~~~~~~--~~~~~l~~~d~~~~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~-------------p~~i~l~d 432 (706)
T 2z3z_A 371 YFESTEAS--PLERHFYCIDIKGGKTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTV-------------PRKVTVTN 432 (706)
T ss_dssp EEEESSSC--TTCBEEEEEETTCCCCEESC---CSSSEEEEEECTTSSEEEEEEECSSC-------------SCEEEEEE
T ss_pred EEEecCCC--CceEEEEEEEcCCCCceecc---CCCceEEEEECCCCCEEEEEecCCCC-------------CcEEEEEE
Confidence 99887631 12468999999988877775 34457789999999999988765543 24699999
Q ss_pred cCCCCeEEecc
Q 004971 653 LDGSDLKRLTQ 663 (721)
Q Consensus 653 ~~~~~~~~lt~ 663 (721)
+++++.+.++.
T Consensus 433 ~~~~~~~~~~~ 443 (706)
T 2z3z_A 433 IGKGSHTLLEA 443 (706)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCCeEeeccc
Confidence 99887444543
No 27
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=7.3e-22 Score=231.60 Aligned_cols=415 Identities=10% Similarity=0.038 Sum_probs=269.2
Q ss_pred ceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccch
Q 004971 59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRT 138 (721)
Q Consensus 59 ~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~ 138 (721)
....+..|...+...+|||||+ +|+..+ .+|.+.||.+. +++. ...
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~---------------------------~l~~~~-~dg~i~vw~~~--~~~~---~~~- 92 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKN---------------------------WIIVGS-DDFRIRVFNYN--TGEK---VVD- 92 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGT---------------------------EEEEEE-TTSEEEEEETT--TCCE---EEE-
T ss_pred eEEEEecCCCcEEEEEEeCCCC---------------------------EEEEEe-CCCeEEEEECC--CCcE---EEE-
Confidence 4567778899999999999998 777654 57887788764 4431 111
Q ss_pred hhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCC
Q 004971 139 ALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVA 217 (721)
Q Consensus 139 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~ 217 (721)
+. +.. ... .+ .| +| +|++|+..+.++. ..+|.++........+..+...
T Consensus 93 -~~~~~~---~v~----~~-------~~-----s~--~~~~l~~~~~dg~--------i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 93 -FEAHPD---YIR----SI-------AV-----HP--TKPYVLSGSDDLT--------VKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp -EECCSS---CEE----EE-------EE-----CS--SSSEEEEEETTSE--------EEEEEGGGTSEEEEEEECCSSC
T ss_pred -EecCCC---CEE----EE-------EE-----eC--CCCEEEEEcCCCE--------EEEEECCCCceEEEEEcCCCCc
Confidence 33 221 111 11 57 99 9999888765531 3455443222334556566666
Q ss_pred ccccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc--C--Ccceecc--CCeEEEEeccCCCC
Q 004971 218 DFSPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN--G--GWPCWVD--ESTLFFHRKSEEDD 290 (721)
Q Consensus 218 ~~~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~--~--~~~~ws~--dg~l~~~~~~~~~g 290 (721)
....+|+| ||+.|+++..+ ..|.+|++.+++........ . ....|+| ++.++++ ...++
T Consensus 143 v~~~~~~p~~~~~l~~~~~d------------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg 208 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLD------------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDL 208 (814)
T ss_dssp EEEEEEETTEEEEEEEEETT------------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTS
T ss_pred EEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCC
Confidence 67779999 88888886643 46999999877755444322 2 2558988 8876663 33478
Q ss_pred cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC
Q 004971 291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT 370 (721)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~ 370 (721)
.+.+|+..... ....+..+...+..++|+| +|+.|+... .++.|++||+.+++.... ...+..
T Consensus 209 ~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~dg~v~vwd~~~~~~~~~--~~~~~~ 271 (814)
T 3mkq_A 209 TIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP-TLPIIISGS-----EDGTLKIWNSSTYKVEKT--LNVGLE 271 (814)
T ss_dssp EEEEEETTTTE---------EEEEEECCSSCEEEEEECS-SSSEEEEEE-----TTSCEEEEETTTCSEEEE--ECCSSS
T ss_pred EEEEEECCCCc---------EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCcEEEE--eecCCC
Confidence 88888543221 3444555666778899999 999888754 334599999998874333 334456
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe----CCcEEEEEC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNS 446 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~ 446 (721)
.+..++|+|+|+.+++...... .+.+.++... .....++|+|+.++... ...++...+
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 333 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDN--------GFTVLSLGND----------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI 333 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETT--------EEEEEECSCC----------SCCEEECSSSEEEEECCTTSCTTCEEEEEC
T ss_pred cEEEEEEccCCCceEEEEEeCC--------CEEEEEcCCC----------CceeEECCCCCEEEECcccccceeeeeeec
Confidence 7788999999986433233222 2444444332 22368899998777652 233444332
Q ss_pred C------CCce-----EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971 447 D------GSNR-----RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513 (721)
Q Consensus 447 ~------~g~~-----~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 513 (721)
. .+.. ..+. ...+..++|+|||+.+++.+ ++.+.||.+... .... .+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--------~~~~~i~~~~~~------~~~~----~~~i 395 (814)
T 3mkq_A 334 RGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--------DGEYVIYTALAW------RNKA----FGKC 395 (814)
T ss_dssp CSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE--------TTEEEEEETTTT------EEEE----EEEC
T ss_pred ccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec--------CCEEEEEECccc------cccC----CCce
Confidence 2 2221 1222 23567899999999999886 467778774321 1111 1245
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC---CEEEEEEccCCCCCCceeEEE
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG---EWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~i~~ 590 (721)
..++|||||++|++... +..|.+|+.-.+ +...+..+.|+||| +.|++...++ .|++
T Consensus 396 ~~~~~spdg~~la~~~~---~g~v~l~~~~~~----------~~~~v~~~~~s~dg~~~~~l~~~~~d~-------~v~~ 455 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDE---TGQIKYYKNFKE----------VTSWSVPMHSAIDRLFSGALLGVKSDG-------FVYF 455 (814)
T ss_dssp SEEEECTTSSCEEEECT---TCCEEEEETTEE----------CTTCCCCCSSCCCEEECSSSEEEEETT-------EEEE
T ss_pred EEEEEeCCCCeEEEEeC---CCcEEEEECCCC----------ccceEEcCCcCccceecceEEEEecCC-------EEEE
Confidence 67999999999998875 667888853321 22334678899998 6788777765 8999
Q ss_pred EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
||+.+++....... +. ..+.|||||++|++.+.+
T Consensus 456 ~d~~~~~~~~~~~~-~~---~~v~~s~dg~~la~~~~~ 489 (814)
T 3mkq_A 456 FDWDNGTLVRRIDV-NA---KDVIWSDNGELVMIVNTN 489 (814)
T ss_dssp ECTTTCCEEEEESS-CE---EEEEECTTSSEEEEEECC
T ss_pred EECCcCcEEEEEec-CC---CEEEEcCCCCEEEEEEcC
Confidence 99998876665432 22 289999999999998643
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=1.7e-21 Score=202.39 Aligned_cols=304 Identities=10% Similarity=0.002 Sum_probs=215.2
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|||++++.... .+...+| ..+... .......+...+..++|+| +|++|+... +..|.
T Consensus 14 ~~~~s~dg~~~~~~~~--~~~~~~~--~~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~l~~~~------dg~i~ 75 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFP--PDALIGP--GIPRHA-------RQINTLNHGEVVCAVTISN-PTRHVYTGG------KGCVK 75 (337)
T ss_dssp EEEECSSSCEEECCCC--TTSSSST--TCCSEE-------EEEEEECCSSCCCEEEECS-SSSEEEEEC------BSEEE
T ss_pred EEEECCCCCEEEeecC--CCcEecc--ccCCcc-------ccceeccCCCceEEEEEec-CCcEEEEcC------CCeEE
Confidence 5689999997663222 2222111 111111 3333445666788999999 999988743 35699
Q ss_pred EEECCCCceEE-eec--ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eec---ccCCCC
Q 004971 351 LFDLVKNKFIE-LTR--FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLF---RFDGSF 423 (721)
Q Consensus 351 l~dl~tg~~~~-l~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~ 423 (721)
+||+.+++... +.. ...+...+..++|+|+++.|++...++. +.++++..+.... ... ......
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~~~d~~~~~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST---------LSIWDLAAPTPRIKAELTSSAPACYA 146 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE---------EEEEECCCC--EEEEEEECSSSCEEE
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc---------EEEEECCCCCcceeeecccCCCceEE
Confidence 99998765221 111 1145667888999999999988765443 6666665543111 111 122345
Q ss_pred ceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
++|+|+++.|+..+ ++.|++||+.+++..... ...+..+.|+|+++.|+..+ .++.+.+|++....
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~--- 216 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-------LDNTVRSWDLREGR--- 216 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTTE---
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-------cCCcEEEEECCCCc---
Confidence 78999999998885 788999999988754433 45678999999999999886 46788888765422
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
....+ .....+..++|+|||+.|++.+. +..|++||+.+++ ...+..+...+..++|+|||+.|+.+..++
T Consensus 217 --~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 217 --QLQQH-DFTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp --EEEEE-ECSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred --eEeee-cCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence 22233 34456778999999999998886 6789999999887 556666667788999999999999888775
Q ss_pred CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.|++|++.+++...... +...+..+.|+|||++|+..+.++
T Consensus 288 -------~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 288 -------LLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp -------EEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred -------cEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecCCC
Confidence 89999999887664443 567788999999999998877655
No 29
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.1e-21 Score=194.62 Aligned_cols=262 Identities=24% Similarity=0.384 Sum_probs=198.7
Q ss_pred CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-CCCccee-cc--
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISL-FR-- 418 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~-- 418 (721)
++.+..|++||+.+++...+.. +...+..++|||||++|++.. . ..++++++.+ +...... ..
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~---~-------~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ---TPELFEAPNWSPDGKYLLLNS---E-------GLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE---ESSCCEEEEECTTSSEEEEEE---T-------TEEEEEESSSCCSCEECCCTTCC
T ss_pred CCcceeEEEEeCCCCceeeecc---CCcceEeeEECCCCCEEEEEc---C-------CeEEEEeCCCCCCceEecccccc
Confidence 3456779999999988765543 255677899999999999864 2 3578888776 4322111 11
Q ss_pred cCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 419 FDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 419 ~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
.....++|||||++|++.. ...|+.+++.++..+.+. ...+..+.|+|||++|+++.. .++.+.||.+
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~ 158 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGI------RDQVFDIYSM 158 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEE------ETTEEEEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEEC------CCCceEEEEE
Confidence 2235589999999999986 467899999888877776 445677899999999997763 4577899999
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l 572 (721)
+..+. ....+..+......+.|+|||++|++.+..++...||.++..++. +..+..+...+..+.|+|||++|
T Consensus 159 ~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 159 DIDSG----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp ETTTC----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEE
T ss_pred ECCCC----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEE
Confidence 98764 667777766677889999999999998876667789988887766 67777666667789999999999
Q ss_pred EEEEccCCC----CCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 573 AFASDRDNP----GSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 573 ~~~~~~~~~----~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
++...+... ......|++||+.+++.+.+... .+...+..++|+|||++|++.+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred EEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 998876310 00235799999999887666532 24567888999999999999888653
No 30
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.3e-21 Score=227.79 Aligned_cols=433 Identities=9% Similarity=0.028 Sum_probs=263.2
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
+| ||++|+..+.++ .|+..+..+++......+.......+|+| |++|+.++.+ ..
T Consensus 26 sp--dg~~lAsgs~Dg----------~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D------------~~ 80 (902)
T 2oaj_A 26 DF--TQNLLAIATVTG----------EVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK------------DT 80 (902)
T ss_dssp ET--TTTEEEEEETTS----------EEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETT------------CE
T ss_pred CC--CCCEEEEEeCCC----------EEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc------------Ce
Confidence 99 999988877653 55555666665544334555556668999 8888887643 46
Q ss_pred EEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccce----EEeCCCCCcccC
Q 004971 251 IYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI----QRVTPPGLHAFT 324 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 324 (721)
|.+|++.+++........+. ...|+|+++.++. ...++.+.+|.+....-. ....... .....+...+..
T Consensus 81 v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~s--gs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLI--GLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp EEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEE--EETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCE
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEE
Confidence 99999998876544433332 4589999987763 334789999964321100 0000000 011234456788
Q ss_pred ceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----------------CCCCcccCcEEcCCCCEEEEE
Q 004971 325 PATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----------------SPKTHHLNPFISPDSSRVGYH 387 (721)
Q Consensus 325 ~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----------------~~~~~~~~~~~Spdg~~l~~~ 387 (721)
++|+| ++ ..++.. ..+..| +||+.+++........ .+...+..++|+|||+.|+..
T Consensus 157 l~~sp-~~~~~l~~g-----~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 157 IQWNP-RDIGTVLIS-----YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp EEEET-TEEEEEEEE-----CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred EEEcc-CCCCEEEEE-----eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 99999 86 444442 244568 9999988754322111 112457789999999999987
Q ss_pred EeeCCCCCCCCcceeEEEeccCCCCcce--e-----c-------------ccCCCCceeC----cCCCEEEEEe-C----
Q 004971 388 KCRGGSTREDGNNQLLLENIKSPLPDIS--L-----F-------------RFDGSFPSFS----PKGDRIAFVE-F---- 438 (721)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~-----~-------------~~~~~~~~~S----pDG~~la~~~-~---- 438 (721)
..++. +.++++..+..... . . ......++|+ ||+..+++.+ .
T Consensus 230 s~Dg~---------i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 230 HEDNS---------LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp ETTCC---------EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred ECCCe---------EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 76665 55556544321000 0 0 0112346784 5554554442 2
Q ss_pred --CcEEEEECC------------------CCceEEEe----ecCceeeEEcC----------CCCeEEEEecCCCCCCCC
Q 004971 439 --PGVYVVNSD------------------GSNRRQVY----FKNAFSTVWDP----------VREAVVYTSGGPEFASES 484 (721)
Q Consensus 439 --~~l~v~d~~------------------~g~~~~l~----~~~~~~~~~sp----------dg~~la~~~~~~~~~~~~ 484 (721)
..+.+|++. ..+..++. ...+..+.+.+ |...++..+ .+
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s-------~d 373 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL-------GN 373 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE-------TT
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc-------CC
Confidence 268888742 11222222 23444555544 334555554 35
Q ss_pred CcEEEEEEEccCCCCc------------cce------------------------EEcccCCCCCcceEEccCCCEEEEE
Q 004971 485 SEVDIISINVDDVDGV------------SAV------------------------RRLTTNGKNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 485 ~~~~i~~~~~~~~~~~------------~~~------------------------~~l~~~~~~~~~~~~SpDg~~l~~~ 528 (721)
+.+++|++........ ..+ ..+..+......++|+|||+.|+..
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence 6777776521100000 000 0111222334557899999999998
Q ss_pred EeeCCceeEEEEECCCCcccceE--E--Cc-----CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-
Q 004971 529 STRTGYKNLYIMDAEGGEGYGLH--R--LT-----EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL- 598 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~~~~--~--l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~- 598 (721)
+. +..|.+||+.++...... . +. .+...+..++|||||+.||.+..++ .|.+|++.+++.
T Consensus 454 s~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-------tV~lwd~~~~~~~ 523 (902)
T 2oaj_A 454 HS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-------DVVLFKYEVNQFY 523 (902)
T ss_dssp ET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS-------CEEEEEEEECCC-
T ss_pred cC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc-------EEEEEEecCcccc
Confidence 87 889999999988632111 1 11 3455678999999999999999885 899999876631
Q ss_pred --------------------------------------------EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCC
Q 004971 599 --------------------------------------------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE 634 (721)
Q Consensus 599 --------------------------------------------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 634 (721)
..... ++.+.+..++||||| +|+..+.+.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~svafSpdG-~lAsgs~D~----- 596 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAINNSNIG-FVGIAYAAG----- 596 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEEEECBTS-EEEEEETTS-----
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-cCCCcEEEEEecCCc-EEEEEeCCC-----
Confidence 22222 377788999999999 888877665
Q ss_pred CCCCCCCCCCCccEEEEEcCCCCeE---Ee---c-cCCCCCCCceec-----CC-----cCCccccc
Q 004971 635 PISTPHQYQPYGEIFKIKLDGSDLK---RL---T-QNSFEDGTPAWG-----PR-----FIRPVDVE 684 (721)
Q Consensus 635 ~~~~~~~~~~~~~l~~~d~~~~~~~---~l---t-~~~~~~~~~~~s-----p~-----~l~~~~~~ 684 (721)
.|.+||++++... .+ . .|...+.+.+|| |+ .|+.+..|
T Consensus 597 ------------tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 597 ------------SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp ------------EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred ------------cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 3999999887653 22 2 456668889999 76 46665555
No 31
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.4e-20 Score=216.96 Aligned_cols=318 Identities=12% Similarity=0.097 Sum_probs=201.6
Q ss_pred CCEEEEEecCCCCCCCCCccceEEEEeCCCcce--EeecCCC-----------------CCccccccCCCCCEEEEEecC
Q 004971 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT--RRLTPYG-----------------VADFSPAVSPSGKYTAVASYG 236 (721)
Q Consensus 176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~--~~lt~~~-----------------~~~~~p~~SPDG~~la~~~~~ 236 (721)
|+.+++.... .| .+++.+|+. +.+..+. ......+|||| ++++++.
T Consensus 35 g~~~~~~~~~-----------~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-- 99 (706)
T 2z3z_A 35 GDNYVFIEGD-----------DL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-- 99 (706)
T ss_dssp TTEEEEEETT-----------EE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE--
T ss_pred CCeEEEEeCC-----------cE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE--
Confidence 6777776543 46 778888877 6554322 22445689999 7888864
Q ss_pred CCCCCcccceeeeeEEEEEcCCCceeEEEeccC--CcceeccCCe-EEEEeccCCCCcEEEEEEecCC--Ccceeccccc
Q 004971 237 NKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG--GWPCWVDEST-LFFHRKSEEDDWISVYKVILPQ--TGLVSTESVS 311 (721)
Q Consensus 237 ~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~--~~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~--~~~~~~~~~~ 311 (721)
...|++|++.+++.+++..... ..++|||||+ +++. . ++.+.+|.+...+ .+ +
T Consensus 100 -----------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~--~~~i~v~~~~~~~~~~g-------~ 157 (706)
T 2z3z_A 100 -----------QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--R--NHNLYIARGGKLGEGMS-------R 157 (706)
T ss_dssp -----------TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--E--TTEEEEEECBCTTSCCC-------C
T ss_pred -----------CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--E--CCeEEEEecCcccccCC-------C
Confidence 2589999999998887765433 3679999997 4552 2 4556666433200 02 3
Q ss_pred eEEeCCCCCc---------------ccCceeecCCCCEEEEEEecCCC----------------------------Ceee
Q 004971 312 IQRVTPPGLH---------------AFTPATSPGNNKFIAVATRRPTS----------------------------SYRH 348 (721)
Q Consensus 312 ~~~~~~~~~~---------------~~~~~~sp~dG~~la~~~~~~g~----------------------------~~~~ 348 (721)
..+++..... +..+.||| ||++|++....... ....
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 4454443222 47889999 99999998643211 1223
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP 428 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp 428 (721)
|++||+++++...+.....+...+ ..++|||
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~sp 267 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFL-------------------------------------------------TNLSWSP 267 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEE-------------------------------------------------EEEEECT
T ss_pred EEEEECCCCceEeeccCCCCceeE-------------------------------------------------eeEEEEC
Confidence 444444433322221100011112 2356666
Q ss_pred CCCEEEEEe-C-----CcEEEEECCCC-ceEEEe-e-c-----CceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 429 KGDRIAFVE-F-----PGVYVVNSDGS-NRRQVY-F-K-----NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 429 DG~~la~~~-~-----~~l~v~d~~~g-~~~~l~-~-~-----~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
||++|++.. + ..|++||+.++ ..+.+. . . .+..+.||| ||+.++... .++..+||.+
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-------~~g~~~l~~~ 340 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-------RDGWNHLYLY 340 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-------TTSSCEEEEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-------cCCccEEEEE
Confidence 666666642 2 26888888887 554444 1 1 135689999 998666553 4577899999
Q ss_pred EccCCCCccceEEcccCCCCCcc-eEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~-~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
+..+. ..+.++.+...+.. ++|+|||++|++.+..++ ...||++|+.+++ ++.++.. ..+..++|||||
T Consensus 341 ~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~-~~~~~~~~spdg 412 (706)
T 2z3z_A 341 DTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLTPE-SGMHRTQLSPDG 412 (706)
T ss_dssp ETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESCCS-SSEEEEEECTTS
T ss_pred ECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceeccCC-CceEEEEECCCC
Confidence 96654 67778776655554 799999999999987654 4589999999887 6667643 345789999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
++|++..... .....|++||+++++.
T Consensus 413 ~~l~~~~~~~---~~p~~i~l~d~~~~~~ 438 (706)
T 2z3z_A 413 SAIIDIFQSP---TVPRKVTVTNIGKGSH 438 (706)
T ss_dssp SEEEEEEECS---SCSCEEEEEESSSCEE
T ss_pred CEEEEEecCC---CCCcEEEEEECCCCeE
Confidence 9999886653 2345799999998873
No 32
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=229.62 Aligned_cols=320 Identities=13% Similarity=0.093 Sum_probs=210.8
Q ss_pred cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
..++|+| ||+ +++.. .+..|++||+++++.+.+...... ...+..++|||||++|++...............
T Consensus 19 ~~~~~s~-dg~-~~~~~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 19 FFPNWIS-GQE-YLHQS-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCCEESS-SSE-EEEEC-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred CccEECC-CCe-EEEEc-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 4789999 995 44422 234699999999987766532110 012667999999999999876432111111146
Q ss_pred eEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC--------------------c
Q 004971 402 LLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN--------------------A 459 (721)
Q Consensus 402 l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~--------------------~ 459 (721)
++++++.++.. ...........++|||||++|+|+.+..|++|++.+++.++++ .+. .
T Consensus 92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 88888876522 0012223456789999999999999999999999999887776 221 1
Q ss_pred eeeEEcCCCCeEEEEecCCCC-C------------------------CCCCcEEEEEEEccCCCCccce---EEcc----
Q 004971 460 FSTVWDPVREAVVYTSGGPEF-A------------------------SESSEVDIISINVDDVDGVSAV---RRLT---- 507 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~~~-~------------------------~~~~~~~i~~~~~~~~~~~~~~---~~l~---- 507 (721)
..+.|||||++|++.+..... . .......|+.++..++ .. ..+.
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~----~~~~~~~~~~~~~ 247 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP----AYVGPQEVPVPAM 247 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH----HHHCCEECCCCHH
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC----CccceeEccCCcc
Confidence 479999999999998742100 0 0123346666666553 22 1222
Q ss_pred --cCCCCCcceEEccCCCEEEEEEeeC-CceeEEEEE----CCCCcccceEECc-----CCCcCce-----eeEEccCCC
Q 004971 508 --TNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMD----AEGGEGYGLHRLT-----EGPWSDT-----MCNWSPDGE 570 (721)
Q Consensus 508 --~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d----~~~g~~~~~~~l~-----~~~~~~~-----~~~~SpDG~ 570 (721)
.+...+..++|||||+.++...++. ....|++|| +.+++. ..+. .+...+. .+.|||||+
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---PKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---CGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---EEEEecccccCCceEccccCCccEECCCCC
Confidence 2344567799999976554444332 345799999 888773 3333 2222233 789999999
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec----CCCcCCCCCCCCCCCCCc
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY----GGISAEPISTPHQYQPYG 646 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 646 (721)
.|++...+. .+..+||+||+++++.+.++. ....+..+.++ ||+.|++.+.+ .+. .
T Consensus 325 ~l~~~~~~~---~g~~~l~~~~~~~~~~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~--------------~ 384 (719)
T 1z68_A 325 SYYKIFSDK---DGYKHIHYIKDTVENAIQITS--GKWEAINIFRV-TQDSLFYSSNEFEEYPGR--------------R 384 (719)
T ss_dssp CEEEEEECT---TSCEEEEEESSCSTTCEECSC--SSSCEEEEEEE-CSSEEEEEESCGGGCTTC--------------B
T ss_pred eEEEEEEcc---CCceEEEEEECCCCceEeccc--CceEEEEEEEE-eCCEEEEEEecCCCCCce--------------E
Confidence 998854433 366799999999988777764 23345566677 99999999876 221 3
Q ss_pred cEEEEEcCCC--CeEEecc----CCCCCCCceecCC
Q 004971 647 EIFKIKLDGS--DLKRLTQ----NSFEDGTPAWGPR 676 (721)
Q Consensus 647 ~l~~~d~~~~--~~~~lt~----~~~~~~~~~~sp~ 676 (721)
+||.++++++ +.+.|+. +......+.|||+
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~d 420 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDY 420 (719)
T ss_dssp EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGG
T ss_pred EEEEEeCCCCCCCceeccCccCCCCCceEEEEECCC
Confidence 6999998766 4577774 2233456888885
No 33
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=2e-21 Score=207.12 Aligned_cols=313 Identities=14% Similarity=0.157 Sum_probs=210.8
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCcc-ccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADF-SPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~-~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
+| ||++|+|+....+. ..||.+++++++.++++....... .+.|||||++|+|+..+ .
T Consensus 44 Sp--dG~~l~~~~~~~g~-------~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~------------~ 102 (396)
T 3c5m_A 44 TQ--DGKKLLFAGDFDGN-------RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE------------L 102 (396)
T ss_dssp CT--TSCEEEEEECTTSS-------CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT------------T
T ss_pred CC--CCCEEEEEEecCCC-------ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC------------C
Confidence 99 99999999876432 389999999999999876554433 37899999999997633 3
Q ss_pred eEEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeec
Q 004971 250 DIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP 329 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 329 (721)
.||++++.+++.+++..... .|+++|+.++. ... .....++ ...+.++|
T Consensus 103 ~l~~~d~~~~~~~~~~~~~~---~~~~~g~~l~~-~~~-~~~~~~~--------------------------~~~~~~sp 151 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVDE---EWKGYGTWVAN-SDC-TKLVGIE--------------------------ILKRDWQP 151 (396)
T ss_dssp EEEEEETTTCCEEEEEECCT---TEEEEEEEEEC-TTS-SEEEEEE--------------------------EEGGGCCC
T ss_pred cEEEEECCCCCcEEEEeccc---ccCCCCCEEEe-ccC-Ccccccc--------------------------ccccccCC
Confidence 69999999999887765332 28888764331 111 1111111 12456899
Q ss_pred CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
||+++++...........|++||+.+++.+.+... ...+..+.|+| ||++|++....... .....+++.++.
T Consensus 152 -dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~---~~~~~l~~~d~~ 224 (396)
T 3c5m_A 152 -LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHD---LVDARMWLVNED 224 (396)
T ss_dssp -CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSS---SCSCCCEEEETT
T ss_pred -CCcceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCC---CCCceEEEEECC
Confidence 99988774311122446699999999887666532 44566789999 89999998642210 011358888876
Q ss_pred CCCC-cceec--ccCCCCceeCcCCCEEEEEe----CCc--EEEEECCCCceEEEeecCceeeEEcC-CCCeEEEEecCC
Q 004971 409 SPLP-DISLF--RFDGSFPSFSPKGDRIAFVE----FPG--VYVVNSDGSNRRQVYFKNAFSTVWDP-VREAVVYTSGGP 478 (721)
Q Consensus 409 ~~~~-~~~~~--~~~~~~~~~SpDG~~la~~~----~~~--l~v~d~~~g~~~~l~~~~~~~~~~sp-dg~~la~~~~~~ 478 (721)
+... .+... ......+.|||||++|++.. ... |++||+.+++.+.+.......+.|+| ||+.+++.....
T Consensus 225 ~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 225 GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC
T ss_pred CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCc
Confidence 5422 22111 11233469999999998883 234 99999999887776622122389999 999888754210
Q ss_pred CC-------CCCCCcEEEEEEEccCCCCccceEEcccCCC-----------CCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 479 EF-------ASESSEVDIISINVDDVDGVSAVRRLTTNGK-----------NNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 479 ~~-------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
.+ ....+...||.++..++ ..+.++.+.. ....++|+|||++|++.+.+.+..+||++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK----SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT----BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ceeeccccccccCCCCcEEEEecccC----ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 00 01124467777777664 4556665543 25678999999999999987777899999
Q ss_pred ECCCCc
Q 004971 541 DAEGGE 546 (721)
Q Consensus 541 d~~~g~ 546 (721)
++++++
T Consensus 381 ~~~~~~ 386 (396)
T 3c5m_A 381 DVPESY 386 (396)
T ss_dssp ECCTTC
T ss_pred EEcccc
Confidence 999877
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=4.3e-21 Score=199.40 Aligned_cols=313 Identities=14% Similarity=0.081 Sum_probs=214.9
Q ss_pred cccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCC-CceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEE
Q 004971 219 FSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD-GTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY 295 (721)
Q Consensus 219 ~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~-g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~ 295 (721)
...+|||||+++++....+. +..+.... .+......+... ..+|+||++++++ .. ++.+.+|
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~~-dg~i~iw 77 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDA------------LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT--GG-KGCVKVW 77 (337)
T ss_dssp CEEEECSSSCEEECCCCTTS------------SSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEE--EC-BSEEEEE
T ss_pred eEEEECCCCCEEEeecCCCc------------EeccccCCccccceeccCCCceEEEEEecCCcEEEE--cC-CCeEEEE
Confidence 44589999999998654332 11111111 111111222222 4589999987664 33 6889999
Q ss_pred EEecCCCcceeccccceEEeC--CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971 296 KVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373 (721)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~ 373 (721)
.+...... .....+. .+...+..++|+| ++++|+... .+..|.+||+.+++.........+...+.
T Consensus 78 ~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 78 DISHPGNK------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY 145 (337)
T ss_dssp ETTSTTCC------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEE-----SSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred ECCCCCce------eeeecccccCCCCcEEEEEEcC-CCCEEEEEc-----CCCcEEEEECCCCCcceeeecccCCCceE
Confidence 65443211 0222222 4555678899999 999988854 34569999999887544444455566778
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN 450 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~ 450 (721)
.++|+|+++.|+....++. +.++++..... .+.........++|+|+|+.|+..+ ++.|++||+.+++
T Consensus 146 ~~~~~~~~~~l~~~~~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp EEEECTTSSEEEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEeCCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 8999999999988765544 56666654421 1111122334579999999998885 7889999999887
Q ss_pred eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEE
Q 004971 451 RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 451 ~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~ 528 (721)
..... ...+..+.|+|+++.|++.+ .++.+.+|++... ....+..+...+..++|+|||++|+..
T Consensus 217 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~i~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPTGEWLAVGM-------ESSNVEVLHVNKP------DKYQLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTSS------CEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEeeecCCCceEEEEECCCCCEEEEEc-------CCCcEEEEECCCC------CeEEEcCCccceeEEEECCCCCEEEEe
Confidence 54443 56778999999999999886 4677888876542 445566666778889999999999988
Q ss_pred EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
+. +..|++||+.+++. .....+...+..++|+|||++|+++..++ .|++|++
T Consensus 284 ~~---dg~i~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~ 335 (337)
T 1gxr_A 284 GK---DNLLNAWRTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGSGDK-------KATVYEV 335 (337)
T ss_dssp ET---TSEEEEEETTTCCE---EEEEECSSCEEEEEECTTSCEEEEEETTS-------CEEEEEE
T ss_pred cC---CCcEEEEECCCCeE---EEEecCCCcEEEEEECCCCCEEEEecCCC-------eEEEEEE
Confidence 86 77899999998874 33334455678899999999999988775 7888885
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.88 E-value=1.1e-20 Score=197.38 Aligned_cols=275 Identities=10% Similarity=0.035 Sum_probs=202.9
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
..+..+...+..++|+| ||++|+..+ .++.|.+||+.+++.. .....+...+..++|+|+|+.|+....++.
T Consensus 49 ~~l~gH~~~v~~~~~s~-d~~~l~s~s-----~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGT-DSRLLLSAS-----QDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEE-----TTTEEEEEETTTCCEE--EEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred eeecCCCCceEEEEECC-CCCEEEEEe-----CCCcEEEEECCCCCcc--eEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 44566666788999999 999988754 3456999999988743 333445666788999999999988765443
Q ss_pred CCCCCCcceeEEEeccCCCCcce------ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceee
Q 004971 393 STREDGNNQLLLENIKSPLPDIS------LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFST 462 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~ 462 (721)
+.++++........ ..........|+++++ ++.. .++.|.+||+.+++..... .+.+..+
T Consensus 121 ---------v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 121 ---------CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp ---------EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ---------EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 45555544321111 1111223457888886 4444 5889999999988755433 4568899
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
.|+|+++.++..+ .++.+.+|++.... ....+..+...+..++|+|||++|+..+. +..|.+||+
T Consensus 191 ~~~~~~~~l~sg~-------~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~ 255 (340)
T 1got_B 191 SLAPDTRLFVSGA-------CDASAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 255 (340)
T ss_dssp EECTTSSEEEEEE-------TTSCEEEEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred EECCCCCEEEEEe-------CCCcEEEEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence 9999999988876 57899999875432 45667677777888999999999998887 788999999
Q ss_pred CCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 543 EGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 543 ~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
.+++. +..+.. ....+..++|+|||+.|+.+..++ .|++||+.+++...... +|...+..++|+|||+
T Consensus 256 ~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-------~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 256 RADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-------NCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM 325 (340)
T ss_dssp TTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS
T ss_pred CCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCC-------eEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCC
Confidence 88763 333332 223467899999999999998875 89999998887665544 3778889999999999
Q ss_pred EEEEEEecCC
Q 004971 621 SIVFTSDYGG 630 (721)
Q Consensus 621 ~l~~~~~~~~ 630 (721)
+|+..+.++.
T Consensus 326 ~l~s~s~D~~ 335 (340)
T 1got_B 326 AVATGSWDSF 335 (340)
T ss_dssp CEEEEETTSC
T ss_pred EEEEEcCCcc
Confidence 9998877653
No 36
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.3e-21 Score=220.22 Aligned_cols=285 Identities=15% Similarity=0.132 Sum_probs=199.0
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee-CCCCCCCCc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR-GGSTREDGN 399 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~-~~~~~~~~~ 399 (721)
.+..++||| ||++|+|.+...+ .+.+|++++++.++++.. +...+..++|||| +++|.... ++.. .
T Consensus 23 ~~~~~~~~~-DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~--~~~~~~~~~~spd--~~l~~~~~~~g~~----~ 89 (582)
T 3o4h_A 23 EKYSLQGVV-DGDKLLVVGFSEG----SVNAYLYDGGETVKLNRE--PINSVLDPHYGVG--RVILVRDVSKGAE----Q 89 (582)
T ss_dssp CEEEEEEEE-TTTEEEEEEEETT----EEEEEEEETTEEEECCSS--CCSEECEECTTCS--EEEEEEECSTTSC----C
T ss_pred chheeecCC-CCCeEEEEEccCC----ceeEEEEcCCCcEeeecc--cccccccccCCCC--eEEEEeccCCCCc----c
Confidence 456788999 9999999876433 367777878877666532 2245678999999 56665554 2211 1
Q ss_pred ceeEEEec--cCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEe
Q 004971 400 NQLLLENI--KSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 400 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~ 475 (721)
..+|..++ .+....+.... .....+|||||+.++++ ....+.+||+++++.+++.......+.|||||++|++.+
T Consensus 90 ~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG 168 (582)
T ss_dssp EEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE
T ss_pred eEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE
Confidence 46777777 44432222111 22346899999887777 356777999999998888744448999999999999887
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~ 555 (721)
.. ..+...||.++..++ +.+.++.+......++|||||++|+ .+.+++..+||+||+++++ ...+..
T Consensus 169 ~~-----~~~~~~i~~~d~~~g----~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~---~~~~~~ 235 (582)
T 3o4h_A 169 FF-----GGGRVSLFTSNLSSG----GLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGS---VEDLEL 235 (582)
T ss_dssp EE-----ETTEEEEEEEETTTC----CCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCC---EEECCC
T ss_pred Ec-----CCCCeEEEEEcCCCC----CceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCc---EEEccC
Confidence 41 123356888887765 6778887777778899999999999 5555556699999999988 445555
Q ss_pred CCcCceeeE--------EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 556 GPWSDTMCN--------WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 556 ~~~~~~~~~--------~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
+...+..++ ||||| .+++..... + .+.+|++ |+..+. ..+.+..++|| ||+.++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~----g--~~~l~~~--g~~~~~----~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDG-RLAVVARRE----G--RSAVFID--GERVEA----PQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTS-CEEEEEEET----T--EEEEEET--TEEECC----CSSEEEEEEEE-TTEEEEEEEE
T ss_pred CCcChhhhhhccccceeEcCCC-cEEEEEEcC----C--cEEEEEE--CCeecc----CCCceEEEEec-CCEEEEEEcC
Confidence 555556677 99999 555555442 2 6777887 544331 23556789999 9998877666
Q ss_pred cCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
... +++||++|+++ +.++|
T Consensus 302 ~~~--------------p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 302 LST--------------PPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp TTE--------------EEEEEEETTCC-EEECC
T ss_pred CCC--------------CCeEEEEcCCC-ceEEE
Confidence 554 24799999876 55555
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-20 Score=202.65 Aligned_cols=319 Identities=11% Similarity=0.010 Sum_probs=219.7
Q ss_pred cceeccCCe-EEEEeccCCCCcEEEEEE----ecCCCcceeccccceEEeCC----------CCCcccCceeecCCCCEE
Q 004971 271 WPCWVDEST-LFFHRKSEEDDWISVYKV----ILPQTGLVSTESVSIQRVTP----------PGLHAFTPATSPGNNKFI 335 (721)
Q Consensus 271 ~~~ws~dg~-l~~~~~~~~~g~~~l~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sp~dG~~l 335 (721)
..+|+|||+ ++++ ...++.+.+|.+ ...... -.......+.. +...+..++|+| +|++|
T Consensus 50 ~~~~s~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 123 (425)
T 1r5m_A 50 SSTWNPLDESILAY--GEKNSVARLARIVETDQEGKKY---WKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSI 123 (425)
T ss_dssp EEEECSSCTTEEEE--EETBTEEEEEEEEEC------C---EEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEE
T ss_pred EEEECCCCCcEEEE--ecCCceEEEEEEecccCCcccc---ccccccccccccccccccccCCCCceEEEEEcC-CCCEE
Confidence 568999998 7774 333788999976 222100 00000111211 233677889999 99999
Q ss_pred EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--c
Q 004971 336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--D 413 (721)
Q Consensus 336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 413 (721)
+.... +..|.+||. +++. +.....+...+..++|+|+++.|+....++. +.++++..+.. .
T Consensus 124 ~~~~~-----dg~i~i~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 124 VTGVE-----NGELRLWNK-TGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENV---------TILWNVISGTVMQH 186 (425)
T ss_dssp EEEET-----TSCEEEEET-TSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCC---------EEEEETTTTEEEEE
T ss_pred EEEeC-----CCeEEEEeC-CCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCe---------EEEEECCCCcEEEE
Confidence 88543 345999994 4442 2233455677888999999999988765544 55555544311 1
Q ss_pred ceecccC---------------CCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEe
Q 004971 414 ISLFRFD---------------GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 414 ~~~~~~~---------------~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~ 475 (721)
+...... ...+.|+|++..++...++.|++||+.+++..... ...+..+.|+|+++.|+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 1111111 45678999875433336889999999887754333 45678999999999999886
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~ 555 (721)
.++.+.+|++.... ....+..+...+..++|+||+ .|+..+. +..|++||+.+++. +..+..
T Consensus 267 -------~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~--~~~~~~ 328 (425)
T 1r5m_A 267 -------DDGTLRIWHGGNGN-----SQNCFYGHSQSIVSASWVGDD-KVISCSM---DGSVRLWSLKQNTL--LALSIV 328 (425)
T ss_dssp -------TTSCEEEECSSSBS-----CSEEECCCSSCEEEEEEETTT-EEEEEET---TSEEEEEETTTTEE--EEEEEC
T ss_pred -------CCCEEEEEECCCCc-----cceEecCCCccEEEEEECCCC-EEEEEeC---CCcEEEEECCCCcE--eEeccc
Confidence 56889999876543 455666666678889999999 7777776 67999999998874 555555
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--------------------eEEeeecCCCC--CcCCe
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--------------------LRKLIQSGSAG--RANHP 613 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--------------------~~~l~~~~~~~--~~~~~ 613 (721)
+...+..++|+|||+.|+.+..++ .|++||+.+++ ....... +.. .+..+
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg-------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~ 400 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDG-------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-SQDNDYIFDL 400 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTS-------CEEEEECHHHHC--------------CEECCEEEEECC-TTCCCCEEEE
T ss_pred CCccEEEEEEcCCCCEEEEEECCC-------eEEEEECCCCccceeeeecccccccCcccchhhhhhcC-cccCCceEEE
Confidence 566778999999999999988775 89999998776 4444332 433 78899
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+|+|||++|+..+.++ .|++|+++|
T Consensus 401 ~~s~~~~~l~~~~~dg-----------------~i~iw~~~g 425 (425)
T 1r5m_A 401 SWNCAGNKISVAYSLQ-----------------EGSVVAIPG 425 (425)
T ss_dssp EECTTSSEEEEEESSS-----------------CCEEEECCC
T ss_pred EccCCCceEEEEecCc-----------------eEEEEeecC
Confidence 9999999998877665 388888864
No 38
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.1e-19 Score=188.76 Aligned_cols=292 Identities=12% Similarity=0.084 Sum_probs=193.4
Q ss_pred ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~ 404 (721)
..|++ ++++++..... +..|.+||+++++....... +.... .++|+|||++|++..... ..+++
T Consensus 3 ~~~~~-~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~ 66 (331)
T 3u4y_A 3 AMFQT-TSNFGIVVEQH----LRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDFC--------QTLVQ 66 (331)
T ss_dssp ----C-CCCEEEEEEGG----GTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEESTT--------CEEEE
T ss_pred eeEcC-CCCEEEEEecC----CCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCCC--------CeEEE
Confidence 45666 77776665432 34699999999986544332 23334 789999999888765533 35788
Q ss_pred EeccCCCC--cceecccCCCC-ceeCcCCCEEEEEeCC----cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEe
Q 004971 405 ENIKSPLP--DISLFRFDGSF-PSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 405 ~~~~~~~~--~~~~~~~~~~~-~~~SpDG~~la~~~~~----~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~ 475 (721)
+++.++.. ........... ++|+|||++|+..... .|++||+.+++..... ......++|+|||++|+++.
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 67 IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE
T ss_pred EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe
Confidence 88766532 11112233445 8999999999844333 8999999988765443 34567899999999988876
Q ss_pred cCCCCCCCCCc-EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEEC
Q 004971 476 GGPEFASESSE-VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRL 553 (721)
Q Consensus 476 ~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l 553 (721)
. .++. +.+|+++.++.........+ ........++|+|||++|++.... ...|++||+.+++. ..+..+
T Consensus 147 ~------~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 147 R------SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI--GNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp E------TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT--TTEEEEEECSSTTSCEEEEEE
T ss_pred c------CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCcccceeeec
Confidence 3 3456 89999875442000011222 223356778999999999887753 46799999998873 112333
Q ss_pred cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-----CCC---cCCeEECCCCCEEEEE
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-----AGR---ANHPYFSPDGKSIVFT 625 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~---~~~~~~SpDG~~l~~~ 625 (721)
.. ......++|+|||++|+++... ...|++||+.+++.+.+..... ... ...++|+|||++|+++
T Consensus 218 ~~-~~~~~~~~~spdg~~l~v~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 218 GT-NNLPGTIVVSRDGSTVYVLTES------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EC-SSCCCCEEECTTSSEEEEECSS------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred cC-CCCCceEEECCCCCEEEEEEcC------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 33 3445789999999998877643 2479999999987644332111 111 1347999999999888
Q ss_pred EecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
+.+.+ .|.+||++++....+...
T Consensus 291 ~~~~~----------------~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 291 ANISR----------------ELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp ETTTT----------------EEEEEETTSCEEEECTTC
T ss_pred cCCCC----------------cEEEEEecCCcccceecc
Confidence 77654 499999998877666543
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.87 E-value=4.8e-20 Score=195.59 Aligned_cols=288 Identities=13% Similarity=0.112 Sum_probs=208.7
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG 392 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 392 (721)
..+.+|...+..++|+| +|++|+..+ .+..|.+||+.+++.. .....+...+..++|+|+|+.|+....++.
T Consensus 60 ~~l~gH~~~V~~~~~sp-~~~~l~s~s-----~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTP-EKNWIVSAS-----QDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EEECCCSSCEEEEEECT-TSSCEEEEE-----TTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred ecccccccEEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 44566777788999999 999998854 4566999999988743 333455677888999999999988665554
Q ss_pred CCCCCCcceeEEEeccCCC---------CcceecccCCCCceeCcCCC-EEEEE-eCCcEEEEECCCCceEEEe------
Q 004971 393 STREDGNNQLLLENIKSPL---------PDISLFRFDGSFPSFSPKGD-RIAFV-EFPGVYVVNSDGSNRRQVY------ 455 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~SpDG~-~la~~-~~~~l~v~d~~~g~~~~l~------ 455 (721)
+.++++.... ..+...........|+|++. .|+.. .++.|.+||+.+++.....
T Consensus 132 ---------v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 132 ---------CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp ---------CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred ---------EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 3344443210 11112222344568888754 46665 4889999999988765433
Q ss_pred --ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971 456 --FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 456 --~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
...+..+.|++ +++.|+..+ .++.++||++..... ....+..+...+..++|+|||++|+..+.
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs-------~D~~v~~wd~~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-- 269 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGS-------CDTTVRLWDLRITSR----AVRTYHGHEGDINSVKFFPDGQRFGTGSD-- 269 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEE-------TTSCEEEEETTTTCC----CCEEECCCSSCCCEEEECTTSSEEEEECS--
T ss_pred CCccCeEEEEeecCCCCEEEEEE-------CCCeEEEEECCCCCc----ceEEECCcCCCeEEEEEecCCCeEEEEcC--
Confidence 23466788876 778887776 578999999865433 55667777778899999999999998887
Q ss_pred CceeEEEEECCCCcccceEECcCCC-------cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--
Q 004971 533 GYKNLYIMDAEGGEGYGLHRLTEGP-------WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-- 603 (721)
Q Consensus 533 g~~~l~~~d~~~g~~~~~~~l~~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-- 603 (721)
+..|.+||+.+++. +..+.... ..+..++|+|+|+.|+.+..++ .|++||+..++......
T Consensus 270 -D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-------~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 270 -DGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-------DCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp -SSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS-------CEEEEETTTCCEEEEECCS
T ss_pred -CCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCCEEEEEECCC-------CEEEEECCCCceEEEEecc
Confidence 78999999998874 33332211 1257899999999999888775 89999998877554331
Q ss_pred -cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 604 -SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 604 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.+|...+..++|||||++|+..+.++ .|.+|++.+.+
T Consensus 340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~-----------------~i~iW~~~~~~ 377 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGSALCTGSWDK-----------------NLKIWAFSGHR 377 (380)
T ss_dssp CSSCCCCCCEEEECSSSSEEEEECTTS-----------------CEEEEECCSSS
T ss_pred cCCCCCceEEEEECCCCCEEEEeeCCC-----------------CEEEEecCCCc
Confidence 23677889999999999998877665 38999987653
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.6e-20 Score=192.67 Aligned_cols=272 Identities=17% Similarity=0.121 Sum_probs=198.9
Q ss_pred ceeccC----CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCee
Q 004971 272 PCWVDE----STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYR 347 (721)
Q Consensus 272 ~~ws~d----g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~ 347 (721)
.+|+++ +.++++ ...++.+.+|........ ....+..+...+..+.++| ++..++..+ .+.
T Consensus 38 v~~~~~~~~~~~~l~t--gs~D~~v~vW~~~~~~~~-------~~~~l~gh~~~v~~~~~~~-~~~~l~s~s-----~D~ 102 (321)
T 3ow8_A 38 VAWGTNKKENSETVVT--GSLDDLVKVWKWRDERLD-------LQWSLEGHQLGVVSVDISH-TLPIAASSS-----LDA 102 (321)
T ss_dssp EEEC-------CEEEE--EETTSCEEEEEEETTEEE-------EEEEECCCSSCEEEEEECS-SSSEEEEEE-----TTS
T ss_pred EEEecCCCCCCCEEEE--EcCCCCEEEEECCCCCee-------eeeeeccCCCCEEEEEECC-CCCEEEEEe-----CCC
Confidence 478765 445663 334799999976543211 2233556666788899999 999887744 445
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCce
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPS 425 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 425 (721)
.|++||+.+++... ....+...+..++|+|||+.|+....++ .+.++++..+....... ......++
T Consensus 103 ~i~lWd~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~g~~dg---------~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 103 HIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQYLATGTHVG---------KVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTTTEEEE--EEECCTTCCCCEEECTTSSEEEEECTTS---------EEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred cEEEEECCCCCEEE--EEeCCCccEEEEEECCCCCEEEEEcCCC---------cEEEEEcCCCceeEEecCCCceEEEEE
Confidence 69999999987433 3334455677899999999998765433 35666665543222111 11234579
Q ss_pred eCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971 426 FSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS 501 (721)
Q Consensus 426 ~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 501 (721)
|+|||++|+..+ ++.|.+||+.+++..... ...+..++|+||++.|+..+ .++.++||++....
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-------~dg~i~iwd~~~~~----- 239 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-------DDGYIKIYDVQHAN----- 239 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-------TTSCEEEEETTTCC-----
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-------CCCeEEEEECCCcc-----
Confidence 999999999885 788999999988754433 45678999999999999886 57889999876432
Q ss_pred ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
....+..+...+..++|+|||++|+..+. +..|.+||+.+++. +..+..+...+..++|+|||+.|+.++.++
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-- 312 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSS---DKSVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-- 312 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTC--
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCEEEEEeCCC--
Confidence 55667777777888999999999998887 78899999998875 666767777788999999999999888875
Q ss_pred CCCceeEEEEec
Q 004971 582 GSGSFEMYLIHP 593 (721)
Q Consensus 582 ~~~~~~i~~~d~ 593 (721)
.|.+||.
T Consensus 313 -----~i~vwd~ 319 (321)
T 3ow8_A 313 -----EIHIYDC 319 (321)
T ss_dssp -----CEEEEEC
T ss_pred -----eEEEEeC
Confidence 7999985
No 41
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.87 E-value=1.5e-20 Score=201.69 Aligned_cols=274 Identities=11% Similarity=0.041 Sum_probs=208.0
Q ss_pred EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+..+...+..++|+| ++++|+... .+..|.+||+.+++.. .....|...+..++|+|+|+.|+..+.++.
T Consensus 103 ~l~gh~~~V~~~~~~p-~~~~l~s~s-----~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~- 173 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHP-VFSVMVSAS-----EDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMT- 173 (410)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEE-----SSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred eecccCCcEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCe-
Confidence 3455666778899999 999888754 3456999999998743 333556777889999999999988776665
Q ss_pred CCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971 394 TREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV 467 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd 467 (721)
+.++++.+... .+.........++|+|+|+.|+..+ ++.|.+||+.++...... ...+..+.|+||
T Consensus 174 --------i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 174 --------IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp --------CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred --------EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence 33445443311 1111222344578999999998875 788999999988754333 446778999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC--------------------CCEEEE
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD--------------------GKWIVF 527 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--------------------g~~l~~ 527 (721)
|+.|+..+ .++.+.+|++.... ....+..+...+..++|+|+ |.+|+.
T Consensus 246 g~~l~s~s-------~D~~v~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 246 GTLIASCS-------NDQTVRVWVVATKE-----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp SSEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CCEEEEEc-------CCCeEEEEECCCCc-----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 99999886 57899999876533 45566666677788899997 667887
Q ss_pred EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC
Q 004971 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 607 (721)
.+. +..|++||+.+++. +..+..+...+..++|+|+|++|+.++.++ .|++||+.+++...... .|.
T Consensus 314 gs~---D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-------~i~vwd~~~~~~~~~~~-~h~ 380 (410)
T 1vyh_C 314 GSR---DKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDK-------TLRVWDYKNKRCMKTLN-AHE 380 (410)
T ss_dssp EET---TSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTT-------EEEEECCTTSCCCEEEE-CCS
T ss_pred EeC---CCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCceEEEEc-CCC
Confidence 776 77899999998875 666666777778999999999999988875 89999998887555444 377
Q ss_pred CCcCCeEECCCCCEEEEEEecC
Q 004971 608 GRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..+..++|+|++.+|+..+.++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTS
T ss_pred CcEEEEEEcCCCCEEEEEeCCC
Confidence 7889999999999998877765
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.5e-21 Score=207.92 Aligned_cols=315 Identities=11% Similarity=0.074 Sum_probs=212.9
Q ss_pred CcceeccCCe-EEEEecc--------CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEe
Q 004971 270 GWPCWVDEST-LFFHRKS--------EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATR 340 (721)
Q Consensus 270 ~~~~ws~dg~-l~~~~~~--------~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~ 340 (721)
...+|+|||+ ++++... ..++.+.+|.+...... +......+...+..++|+| +|++|+....
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 87 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-------KPIASLQVDSKFNDLDWSH-NNKIIAGALD 87 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-------SCSCCCCCSSCEEEEEECS-SSSCEEEEES
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-------cEEEEEecCCceEEEEECC-CCCeEEEEcc
Confidence 3568999987 6664311 34778899965433211 1222234455678899999 9999988543
Q ss_pred cCCCCeeeEEEEECCCC--ceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEeccCCC------
Q 004971 341 RPTSSYRHIELFDLVKN--KFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIKSPL------ 411 (721)
Q Consensus 341 ~~g~~~~~l~l~dl~tg--~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 411 (721)
+..|.+||+.+. ....+.....+...+..++|+|+ ++.|+....++. +.++++....
T Consensus 88 -----dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~---------v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 88 -----NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE---------IFIWDMNKCTESPSNY 153 (416)
T ss_dssp -----SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC---------EEBCBTTTTSSCTTTC
T ss_pred -----CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe---------EEEEECCCCccccccc
Confidence 345999999871 11133344556777888999999 777776554443 5666665543
Q ss_pred Ccce-----ecccCCCCceeCcC-CCEEEEE-eCCcEEEEECCCCceEEEe---------ecCceeeEEcCCCC-eEEEE
Q 004971 412 PDIS-----LFRFDGSFPSFSPK-GDRIAFV-EFPGVYVVNSDGSNRRQVY---------FKNAFSTVWDPVRE-AVVYT 474 (721)
Q Consensus 412 ~~~~-----~~~~~~~~~~~SpD-G~~la~~-~~~~l~v~d~~~g~~~~l~---------~~~~~~~~~spdg~-~la~~ 474 (721)
.... ........++|+|+ +..|+.. .++.|.+||+.+++..... ...+..+.|+|++. .++..
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 1111 12233456799999 5666666 4788999999988754433 23477899999985 55555
Q ss_pred ecCCCCCCCCC---cEEEEEEEccCCCCccceEEcc-cCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 475 SGGPEFASESS---EVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 475 ~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
+ .++ .+.+|++..... ....+. .+...+..++|+| |+++|+..+. +..|++||+.+++.
T Consensus 234 ~-------~d~~~~~i~~~d~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~-- 297 (416)
T 2pm9_A 234 T-------GSDNDPSILIWDLRNANT----PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ-- 297 (416)
T ss_dssp E-------CCSSSCCCCEEETTSTTS----CSBCCCSCCSSCEEEEEECSSCSSCEEEEES---SSEEEEECSSSCCE--
T ss_pred E-------CCCCCceEEEEeCCCCCC----CcEEeecCccCceeEEEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc--
Confidence 4 344 888888765432 344455 5556788899999 9999998887 77899999998875
Q ss_pred eEECcCCCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEEEecCCCceEEee---------------ec---------
Q 004971 550 LHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI---------------QS--------- 604 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~---------------~~--------- 604 (721)
+..+..+...+..++|+||+ +.|+.++.++ .|.+|++.+++..... ..
T Consensus 298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (416)
T 2pm9_A 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDN-------KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEK 370 (416)
T ss_dssp EEEEECSSSCCCCEEECTTCTTEEEECCSSS-------EEEEEESCCCCCSSCC----------------------CCSC
T ss_pred ceeecCCCCceEEEEECCCCCCEEEEEecCC-------cEEEEEccCCCCCcccccccccccCCcccccccccccccccc
Confidence 66666666677899999999 7777777664 8999999876532110 00
Q ss_pred ----------CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 605 ----------GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 605 ----------~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.+...+..++|||||++|++.+.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 371 PSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp CCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 0123345789999999998776554
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.87 E-value=4.3e-20 Score=193.82 Aligned_cols=276 Identities=10% Similarity=0.056 Sum_probs=201.1
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
...+..|...+..++|+| ||++|+..+ .+..|.+||..+++..... ..+...+...+|+|+|+.|+....++
T Consensus 57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK-DKRRIVSSS-----QDGKVIVWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEEEEEETTTCCEEEEE--ECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEe-----CCCeEEEEECCCCCcceEE--ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 344566777788999999 999988754 4566999999888743322 33456677899999999998765444
Q ss_pred CCCCCCCcceeEEEeccCC--C------CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCc
Q 004971 392 GSTREDGNNQLLLENIKSP--L------PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNA 459 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~--~------~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~ 459 (721)
. +.++++... . ..+.........+.|+|+++.|+..+ ++.|.+||+.+++..... ...+
T Consensus 129 ~---------i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 129 K---------CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp E---------EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred C---------EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 3 334443221 0 01111122234578999999988875 788999999988764433 3456
Q ss_pred eeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 460 FSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 460 ~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
..+.|+| +|+.|+..+ .++.+.+|++.... ....+..+...+..++|+|+|+.|+..+. +..|
T Consensus 200 ~~~~~~~~~~g~~l~sgs-------~Dg~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~v 264 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGG-------CDKKAMVWDMRSGQ-----CVQAFETHESDVNSVRYYPSGDAFASGSD---DATC 264 (354)
T ss_dssp EEEEECCCSSCCEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCE
T ss_pred EEEEEEeCCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEecCCCCCeEEEEEeCCCCEEEEEeC---CCeE
Confidence 6777876 578888876 57899999876533 55666667777888999999999998887 7889
Q ss_pred EEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971 538 YIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 615 (721)
++||+.+++. +..+... ...+..++|+|||+.|+.+..+. .|++||+.+++...... +|...+..++|
T Consensus 265 ~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-------~i~vwd~~~~~~~~~l~-~h~~~v~~l~~ 334 (354)
T 2pbi_B 265 RLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-------TINVWDVLKGSRVSILF-GHENRVSTLRV 334 (354)
T ss_dssp EEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCSEEEEEC-CCSSCEEEEEE
T ss_pred EEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEECCC-------cEEEEECCCCceEEEEE-CCCCcEEEEEE
Confidence 9999987763 3333322 23456899999999999988775 89999998887655443 37788899999
Q ss_pred CCCCCEEEEEEecC
Q 004971 616 SPDGKSIVFTSDYG 629 (721)
Q Consensus 616 SpDG~~l~~~~~~~ 629 (721)
||||++|+..+.++
T Consensus 335 spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 335 SPDGTAFCSGSWDH 348 (354)
T ss_dssp CTTSSCEEEEETTS
T ss_pred CCCCCEEEEEcCCC
Confidence 99999999887765
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.87 E-value=2.1e-20 Score=196.42 Aligned_cols=292 Identities=10% Similarity=0.003 Sum_probs=193.4
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCC-CeeeEEEEECCCCceEE--eecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTS-SYRHIELFDLVKNKFIE--LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~~--l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+...+..++||| ||++|+..+..... -+..|++|+..++.... ......+...+..++|+||++.| ....++.
T Consensus 40 ~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~- 116 (357)
T 4g56_B 40 CMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGA- 116 (357)
T ss_dssp CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSC-
T ss_pred cccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCE-
Confidence 3455678899999 99999987643211 15679999988775321 11222345567889999998654 4444333
Q ss_pred CCCCCcceeEEEeccCCCC----ccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeE
Q 004971 394 TREDGNNQLLLENIKSPLP----DISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTV 463 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~----~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~ 463 (721)
+.++++..+.. .... .......++|+|||++|+..+ ++.|.+||+.+++..... ...+..++
T Consensus 117 --------v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 117 --------VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp --------EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred --------EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 55555544321 1111 112334579999999998885 788999999988765443 45678899
Q ss_pred EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCC-EEEEEEeeCCceeEEEE
Q 004971 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~ 540 (721)
|+|+++.++++. ..++.+.||++.... ....+ ..+...+..++|+|++. .|+..+. +..|++|
T Consensus 189 ~s~~~~~~~~s~------~~dg~v~~wd~~~~~-----~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~w 254 (357)
T 4g56_B 189 ACPGKDTIFLSC------GEDGRILLWDTRKPK-----PATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLV 254 (357)
T ss_dssp ECTTCSSCEEEE------ETTSCEEECCTTSSS-----CBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEE
T ss_pred EccCCCceeeee------ccCCceEEEECCCCc-----eeeeeeeccccccccchhhhhcccceEEEeec---ccceeEE
Confidence 999997554443 257889999765432 22222 22334567789999865 5555555 6789999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC-C
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP-D 618 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp-D 618 (721)
|+.+++. +..+..+...+..++|+|||+ .|+.++.+. .|++||+.+++..... +|...+..++||| |
T Consensus 255 d~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-------~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d 323 (357)
T 4g56_B 255 NIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDC-------TVAVLDADFSEVFRDL--SHRDFVTGVAWSPLD 323 (357)
T ss_dssp ESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTS-------CEEEECTTSCEEEEEC--CCSSCEEEEEECSSS
T ss_pred ECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCC-------EEEEEECCCCcEeEEC--CCCCCEEEEEEeCCC
Confidence 9998875 666666667788999999985 566666664 8999999998766554 3778899999999 8
Q ss_pred CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC-CeEEe
Q 004971 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS-DLKRL 661 (721)
Q Consensus 619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l 661 (721)
+++|+..+.++ .|++|++... +..++
T Consensus 324 ~~~l~s~s~Dg-----------------~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 324 HSKFTTVGWDH-----------------KVLHHHLPSEGRTENL 350 (357)
T ss_dssp TTEEEEEETTS-----------------CEEEEECC--------
T ss_pred CCEEEEEcCCC-----------------eEEEEECCCCCccccc
Confidence 99988877665 3899998653 33443
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=190.07 Aligned_cols=293 Identities=15% Similarity=0.127 Sum_probs=200.8
Q ss_pred EEeCCCCC-cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe-ecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 313 QRVTPPGL-HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL-TRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 313 ~~~~~~~~-~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l-~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
..+..+.. .+..++|+| ||++|+... .+..|++||+.+++.... ....++...+..++|+|||++|+..+.+
T Consensus 9 ~~~~~h~~~~v~~l~~sp-~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNP-AGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEECCSTTSCEEEEEECT-TSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeecCCCCCcEEEEEECC-CCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 34445543 567899999 999998854 345699999988753222 2224567778899999999999987766
Q ss_pred CCCCCCCCcceeEEEeccCCCC-ccee---cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE-E---e--ecCc
Q 004971 391 GGSTREDGNNQLLLENIKSPLP-DISL---FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ-V---Y--FKNA 459 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~-l---~--~~~~ 459 (721)
+. . .++++..... .+.. .......++|+|||++|+..+ ++.|.+||+..+.... + . ...+
T Consensus 83 ~~-------v--~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 83 AT-------T--CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp SC-------E--EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred Cc-------E--EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 65 3 3334333211 1111 122344579999999999885 7899999998765322 2 1 4567
Q ss_pred eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~ 539 (721)
..+.|+|+++.|+..+ .++.+.||++..... .....+..+...+..++|+|||++|+..+. +..|.+
T Consensus 154 ~~~~~~p~~~~l~s~s-------~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~---D~~v~i 220 (345)
T 3fm0_A 154 KHVVWHPSQELLASAS-------YDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSD---DRTVRI 220 (345)
T ss_dssp EEEEECSSSSCEEEEE-------TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEE
T ss_pred EEEEECCCCCEEEEEe-------CCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeC---CCeEEE
Confidence 8899999999999887 578999999875321 123456666778889999999999998887 778999
Q ss_pred EECCCCcc-------------cceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-----eEE
Q 004971 540 MDAEGGEG-------------YGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-----LRK 600 (721)
Q Consensus 540 ~d~~~g~~-------------~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~ 600 (721)
|+...... ..+..+.. +...+..++|+|++..|+.++.+. .|.+|+.+.+. ...
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-------~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-------AIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-------CEEEEEECTTSCTTSCCEE
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-------eEEEEEeCCCCCcceeeEE
Confidence 98632211 00112222 445578899999999999988875 78888876542 111
Q ss_pred e---eecCCCCCcCCeEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 601 L---IQSGSAGRANHPYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 601 l---~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
+ ...+|...+..++|+|++. .|+..+.++ .|.+|++.+++
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg-----------------~v~~W~~~~~~ 337 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG-----------------EVAFWKYQRPE 337 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTS-----------------CEEEEEECC--
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCC-----------------cEEEEEecCCC
Confidence 1 1123667788999999985 676666555 38999987754
No 46
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-20 Score=192.21 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=214.8
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
+...+..+...+..++|+| ||++|+... .+..|.+||+.+++.. .....+...+..++|+|+++.|+....+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~-~~~~l~~~~-----~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNK-EGDLLFSCS-----KDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EEEEEECCSSCEEEEEECT-TSCEEEEEE-----SSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccEEEEEeeceEEEEEEcC-CCCEEEEEe-----CCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 4455667777788999999 999988854 3345999999988743 3345567778899999999999887654
Q ss_pred CCCCCCCCcceeEEEeccCCCCcc-eecccCCCCceeCcCCCEEEEEe-C-----CcEEEEECCCCce------------
Q 004971 391 GGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVE-F-----PGVYVVNSDGSNR------------ 451 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~la~~~-~-----~~l~v~d~~~g~~------------ 451 (721)
+. +.++++..+.... .........+.|+|+|+.++... + +.|.+|++..+..
T Consensus 96 g~---------i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 96 YS---------IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp TE---------EEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred Ce---------EEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 43 6667766542211 11223344579999999998885 4 7899999875531
Q ss_pred EEEe--ec--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971 452 RQVY--FK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527 (721)
Q Consensus 452 ~~l~--~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~ 527 (721)
..+. .+ .+..+.|+|+++.|++.+ .++.+.+|++..... ....+..+...+..++|+||+++|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGH-------KDGKISKYDVSNNYE----YVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEE-------TTSEEEEEETTTTTE----EEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEc-------CCCEEEEEECCCCcE----eEEEEecCCCceeEEEECCCCCEEEE
Confidence 1111 11 677899999999999886 467888888765332 55666666677888999999999998
Q ss_pred EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-------CCCceeEEEEecCCCceEE
Q 004971 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-------GSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~~~i~~~d~~~~~~~~ 600 (721)
.+. +..|++||+.+++. +..+. ....+..+.|+|+++.|+++..+... ..+...+++||+.+++...
T Consensus 236 ~~~---d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 236 SSR---DTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EET---TSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred ecC---CceEEEEECCCCce--eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 886 77899999998874 33333 45556889999999999998876310 0122279999999888766
Q ss_pred eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.... +...+..++|+|||++|+..+.++ .|.+|+++.+
T Consensus 310 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg-----------------~v~iw~~~~~ 347 (369)
T 3zwl_B 310 RVQG-HFGPLNTVAISPQGTSYASGGEDG-----------------FIRLHHFEKS 347 (369)
T ss_dssp EEEC-CSSCEEEEEECTTSSEEEEEETTS-----------------EEEEEEECHH
T ss_pred heec-ccCcEEEEEECCCCCEEEEEcCCC-----------------eEEEEECccc
Confidence 5543 677889999999999998877665 4889998765
No 47
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.4e-20 Score=196.58 Aligned_cols=315 Identities=11% Similarity=0.060 Sum_probs=215.0
Q ss_pred CCccccccCCCCC-EEEEEecCCCCCCcccceeeeeEEEEEc----CCCc------eeEEEec----------cC-C--c
Q 004971 216 VADFSPAVSPSGK-YTAVASYGNKGWDGEVEMLSTDIYIFLT----RDGT------QRVKIVE----------NG-G--W 271 (721)
Q Consensus 216 ~~~~~p~~SPDG~-~la~~~~~~~~w~~~~~~~~~~i~~~d~----~~g~------~~~l~~~----------~~-~--~ 271 (721)
......+|||||+ +||++..+ ..|.+|++ .+++ ....... .. . .
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN------------SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB------------TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred CceEEEEECCCCCcEEEEecCC------------ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 4455568999999 99987643 46888888 7777 2222222 11 2 3
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
.+|+||++++++ ...++.+.+|. ..+. ....+..+...+..++|+| ++++|+.... +..|.+
T Consensus 114 ~~~s~~~~~l~~--~~~dg~i~i~~---~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-----d~~i~i 175 (425)
T 1r5m_A 114 LAWSHDGNSIVT--GVENGELRLWN---KTGA-------LLNVLNFHRAPIVSVKWNK-DGTHIISMDV-----ENVTIL 175 (425)
T ss_dssp EEECTTSSEEEE--EETTSCEEEEE---TTSC-------EEEEECCCCSCEEEEEECT-TSSEEEEEET-----TCCEEE
T ss_pred EEEcCCCCEEEE--EeCCCeEEEEe---CCCC-------eeeeccCCCccEEEEEECC-CCCEEEEEec-----CCeEEE
Confidence 489999987663 33378899995 2222 4555666676788999999 9999887542 345999
Q ss_pred EECCCCceEEeecccCCCCc---------------ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-
Q 004971 352 FDLVKNKFIELTRFVSPKTH---------------HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS- 415 (721)
Q Consensus 352 ~dl~tg~~~~l~~~~~~~~~---------------~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 415 (721)
||+.+++..... ..+... +..+.|+|++. ++....++ .+.++++........
T Consensus 176 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g---------~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 176 WNVISGTVMQHF--ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKG---------AIFVYQITEKTPTGKL 243 (425)
T ss_dssp EETTTTEEEEEE--CCC---------------CCCBSCCEEEETTE-EEEECGGG---------CEEEEETTCSSCSEEE
T ss_pred EECCCCcEEEEe--eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCC---------eEEEEEcCCCceeeee
Confidence 999988754332 222222 77889999865 54444333 367777665422211
Q ss_pred -ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971 416 -LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 416 -~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~ 490 (721)
........++|+|+++.|+... ++.|.+||+..++... +. ...+..+.|+|++ .++..+ .++.+.+|
T Consensus 244 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~d~~i~i~ 315 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-------MDGSVRLW 315 (425)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-------TTSEEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-------CCCcEEEE
Confidence 1222334579999999988885 7889999998876433 33 4577899999999 666665 46788888
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------------cceEE
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------------YGLHR 552 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------------~~~~~ 552 (721)
++.... ....+..+...+..++|+|||++|++.+. +..|++||+.+++. ..+..
T Consensus 316 d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 316 SLKQNT-----LLALSIVDGVPIFAGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387 (425)
T ss_dssp ETTTTE-----EEEEEECTTCCEEEEEECTTSSEEEEEET---TSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred ECCCCc-----EeEecccCCccEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence 775432 44555555667888999999999998886 67899999987650 02555
Q ss_pred CcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 553 LTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 553 l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+..+.. .+..++|+|||++|+++..++ .|++|++.+
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~~g 425 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQ-------EGSVVAIPG 425 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSSEEEEEESSS-------CCEEEECCC
T ss_pred hcCcccCCceEEEEccCCCceEEEEecCc-------eEEEEeecC
Confidence 555543 778999999999999988775 799999864
No 48
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.3e-19 Score=184.04 Aligned_cols=252 Identities=22% Similarity=0.301 Sum_probs=185.6
Q ss_pred ceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC-CceEEEee----cCceeeEEcCCCCeEEE
Q 004971 400 NQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQVYF----KNAFSTVWDPVREAVVY 473 (721)
Q Consensus 400 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~l~~----~~~~~~~~spdg~~la~ 473 (721)
..++++++.++.. .+.........++|||||++|++...+.|++||+.+ ++...+.. ..+..+.|+|||++|++
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEE
Confidence 3466666554421 122223334568999999999999999999999999 88777662 45678999999999999
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
.... .++...||.++..+. ....+.... ....++|+|||++|++....++...||.++..+++ ...+
T Consensus 102 ~~~~-----~~~~~~l~~~~~~~~----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~ 168 (297)
T 2ojh_A 102 SDKV-----EFGKSAIYLLPSTGG----TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRL 168 (297)
T ss_dssp EECT-----TTSSCEEEEEETTCC----CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEEC
T ss_pred EEeC-----CCCcceEEEEECCCC----ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceEc
Confidence 8731 236789999988764 566666554 46678999999999988877666788888888777 6677
Q ss_pred cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 633 (721)
......+..+.|+|||+.|++..... +...||.+++.+++...+.. +...+..+.|+|||++|++.+.+.....
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRT----GQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ccCCCccccceECCCCCEEEEEecCC----CCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 76666678899999999999988642 45688888887777766653 4456678999999999999887653110
Q ss_pred CCCCCCCCCCCCccEEEEEcCCCCeEEec---cCCCCCCCceecCC
Q 004971 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLT---QNSFEDGTPAWGPR 676 (721)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~lt---~~~~~~~~~~~sp~ 676 (721)
..+.....|++||+++++.+.+. .+......++|+|+
T Consensus 243 ------~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 282 (297)
T 2ojh_A 243 ------HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD 282 (297)
T ss_dssp ------CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred ------ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence 00011246999999998876655 45566788999996
No 49
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.85 E-value=2e-19 Score=184.50 Aligned_cols=273 Identities=10% Similarity=0.012 Sum_probs=197.5
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+..+...+..++|+| ||++|+... .+..|.+||+.+++. +.....+...+....|+|+++.|+..+.++.
T Consensus 9 ~~~h~~~V~~~~fsp-~~~~l~s~~-----~dg~v~lWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~-- 78 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP-TEPWVLTTL-----YSGRVELWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFR-- 78 (304)
T ss_dssp EEEECSCEEEEEECS-SSSEEEEEE-----TTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSE--
T ss_pred ecCCCCceEEEEECC-CCCEEEEEc-----CCCcEEEEECCCCce--eEEeeccCCcEEEEEEeCCCCEEEEECCCCE--
Confidence 444555678899999 999998754 345699999998874 3333445666788999999999998765544
Q ss_pred CCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe---ecCceeeEEcC-
Q 004971 395 REDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY---FKNAFSTVWDP- 466 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~---~~~~~~~~~sp- 466 (721)
+.++++..+... +.........++|+|++++|+..+ ++.|.+||+.++. ..... ...+..++|+|
T Consensus 79 -------i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 79 -------IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp -------EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred -------EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 566666554321 111222344579999999988875 7899999998764 33332 45678999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEcc--CCCEEEEEEeeCCceeEEEEECC
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
++..|+..+ .++.++||++.... ....+. .+...+....|+| |+++|+..+. +..|.+||+.
T Consensus 152 ~~~~l~sgs-------~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~~i~iWd~~ 216 (304)
T 2ynn_A 152 DPSTFASGC-------LDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DLTIKIWDYQ 216 (304)
T ss_dssp CTTEEEEEE-------TTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEET---TSEEEEEETT
T ss_pred CCCEEEEEe-------CCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CCeEEEEeCC
Confidence 567787776 57899999875433 223333 2334455667775 7889998887 7899999999
Q ss_pred CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE-
Q 004971 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI- 622 (721)
Q Consensus 544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l- 622 (721)
+++. +..+..+...+..++|+|+++.|+.++.++ .|.+||+.+++..+.... +...+..++|+|+|+.+
T Consensus 217 ~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-------~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (304)
T 2ynn_A 217 TKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDG-------TLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNY 286 (304)
T ss_dssp TTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTS-------CEEEEETTTCCEEEEECC-SSSSEEEEEECTTCGGGC
T ss_pred CCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCC-------eEEEEECCCCceeeeccC-CCccEEEEEECCCCCceE
Confidence 8875 666777777788999999999999988875 899999999887765543 45667789999998642
Q ss_pred EEEEecC
Q 004971 623 VFTSDYG 629 (721)
Q Consensus 623 ~~~~~~~ 629 (721)
+..+.++
T Consensus 287 ~asg~~~ 293 (304)
T 2ynn_A 287 IASGFDN 293 (304)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 3344444
No 50
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.85 E-value=1.7e-19 Score=186.31 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=201.9
Q ss_pred EeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 314 RVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
.+..|...+..++|+| ++ +.|+..+ .+..|++||+.+... ..+..+..|...+...+|+|||++|+..+.
T Consensus 12 ~l~gH~~~V~~l~~~~-~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 12 TLEGHNGWVTSLATSA-GQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EECCCSSCEEEEEECS-SCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEccccceEEEEEccC-CCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3556666778899999 76 6666543 455699999864321 234445567777888999999999998766
Q ss_pred eCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEE
Q 004971 390 RGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVW 464 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~ 464 (721)
++. +.++++..+.. .+.........++|+|+++.|+..+ ++.|.+||+.+.....+. ...+..+.|
T Consensus 86 D~~---------v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 86 DKT---------LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp TSE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred CCE---------EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEE
Confidence 554 56666655421 1111223344578999999988885 788999999876555554 456778889
Q ss_pred cCCC------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 465 DPVR------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 465 spdg------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
+|.+ ..|+..+ .++.+++|++.... ....+..+...+..++|+|||++|+..+. +..|+
T Consensus 157 ~~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~ 221 (319)
T 3frx_A 157 VPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGK---DGEIM 221 (319)
T ss_dssp CCC------CCEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEE
T ss_pred ccCCCCCCCccEEEEEe-------CCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEE
Confidence 8854 4666665 57889999875422 44556667778888999999999998887 78999
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-------CCCCcC
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-------SAGRAN 611 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-------~~~~~~ 611 (721)
+||+.+++. +..+.. ...+..++|+|||.+|+.+... .+.+|+++.+......... +...+.
T Consensus 222 iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~~la~~~~~--------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 222 LWNLAAKKA--MYTLSA-QDEVFSLAFSPNRYWLAAATAT--------GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp EEETTTTEE--EEEEEC-CSCEEEEEECSSSSEEEEEETT--------EEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred EEECCCCcE--EEEecC-CCcEEEEEEcCCCCEEEEEcCC--------CcEEEEeCcCeeeeccCccccccccCcCccee
Confidence 999998874 444443 3457889999999999887755 5888888876543332210 123345
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.++|||||++|+..+.++. |++||+.++
T Consensus 291 ~~~~spdg~~l~sg~~Dg~-----------------i~vWd~~t~ 318 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNV-----------------IRVWQVMTA 318 (319)
T ss_dssp EEEECTTSSEEEEEETTSC-----------------EEEEEEEEC
T ss_pred EEEECCCCCEEEEeecCce-----------------EEEEEEeec
Confidence 7899999999998777653 888887654
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.8e-20 Score=197.20 Aligned_cols=289 Identities=12% Similarity=0.105 Sum_probs=198.9
Q ss_pred cccCceeecCCCCEEEEEEecCC------CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPT------SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g------~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
.+..++|+| ||+.+++.....+ ..+..|++||+.+++.........+...+..++|+|+++.|+....++.
T Consensus 14 ~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-- 90 (416)
T 2pm9_A 14 RTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS-- 90 (416)
T ss_dssp ESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC--
T ss_pred hcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe--
Confidence 346788999 9984444333323 4567799999998753222222235667888999999999988766554
Q ss_pred CCCCcceeEEEeccC---CCCccee---cccCCCCceeCcC-CCEEEEEe-CCcEEEEECCCCc------e-EEE---e-
Q 004971 395 REDGNNQLLLENIKS---PLPDISL---FRFDGSFPSFSPK-GDRIAFVE-FPGVYVVNSDGSN------R-RQV---Y- 455 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~---~~~~~~~---~~~~~~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~------~-~~l---~- 455 (721)
+.++++.. +...+.. .......++|+|+ ++.|+..+ ++.|++||+.+++ . ..+ .
T Consensus 91 -------v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 91 -------LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp -------EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred -------EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 55566554 1112221 2234456899998 77777774 7899999998775 2 122 1
Q ss_pred -ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC------CCCCcceEEccCCC-EEE
Q 004971 456 -FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN------GKNNAFPSVSPDGK-WIV 526 (721)
Q Consensus 456 -~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpDg~-~l~ 526 (721)
...+..+.|+|+ +..|+..+ .++.+.+|++.... ....+..+ ...+..++|+|++. .|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAG-------SSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEES-------SSSCEEEEETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred CCCCeeEEEeCCCCCcEEEEEc-------CCCCEEEEECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 456789999999 55565554 56888998876532 34444443 45677899999985 666
Q ss_pred EEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 527 FRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
..+.......|++||+.++.. ....+. .+...+..++|+| |++.|+.+..++ .|++||+.+++.......
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-------~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-------TVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-------EEEEECSSSCCEEEEEEC
T ss_pred EEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-------CEEEeeCCCCccceeecC
Confidence 666522223899999987631 144444 5666778999999 899999888775 899999998876655543
Q ss_pred CCCCCcCCeEECCCC-CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 605 GSAGRANHPYFSPDG-KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
+...+..++|+||| ++|+..+.++ .|.+|++.++.
T Consensus 304 -~~~~v~~~~~s~~~~~~l~s~~~d~-----------------~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 -RGNWCFKTKFAPEAPDLFACASFDN-----------------KIEVQTLQNLT 339 (416)
T ss_dssp -SSSCCCCEEECTTCTTEEEECCSSS-----------------EEEEEESCCCC
T ss_pred -CCCceEEEEECCCCCCEEEEEecCC-----------------cEEEEEccCCC
Confidence 67788999999999 6766655543 48999987764
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.85 E-value=2.8e-19 Score=188.46 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=190.5
Q ss_pred CCCcccCceeecCCCCEEEEEEecCC--CCeeeEEEEECCCCceE------Eee--cccCCCCcccCcEEcCCCCEEEEE
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPT--SSYRHIELFDLVKNKFI------ELT--RFVSPKTHHLNPFISPDSSRVGYH 387 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g--~~~~~l~l~dl~tg~~~------~l~--~~~~~~~~~~~~~~Spdg~~l~~~ 387 (721)
.++.+..++|+| ||+.|+....... +-+..|++|++..+... ... .+..+...+ .+++++++.++..
T Consensus 13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v--~s~~~~~~~~~~g 89 (365)
T 4h5i_A 13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP--TAIDASKGIILVG 89 (365)
T ss_dssp CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC--CEEEEETTEEEEE
T ss_pred CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce--EEEEeCCCEEEEE
Confidence 355678899999 9998876432111 11335899988765321 111 112222223 4566778777764
Q ss_pred EeeCCCC----CCCCcceeEEEeccCCCCcceecc-----------cCCCCceeCcCCCEEEEEe---CCcEEEEECCCC
Q 004971 388 KCRGGST----REDGNNQLLLENIKSPLPDISLFR-----------FDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGS 449 (721)
Q Consensus 388 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g 449 (721)
...+... ..+ ..+.++++......+.... ...+.++|||||+++++++ ++.|++||+.++
T Consensus 90 ~~~~~~~l~s~~~d--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 90 CNENSTKITQGKGN--KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCCHHHHHHTSCC--CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred ECCCccEEEEecCC--CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 4332211 111 1233333322211111100 0112468999999998773 578999999988
Q ss_pred ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCCEE
Q 004971 450 NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWI 525 (721)
Q Consensus 450 ~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l 525 (721)
+..... ...+..++|||||++|+..+ ++.+.+|...... ..... ..+...+..++|+|||+.+
T Consensus 168 ~~~~~~~~~~~V~~v~fspdg~~l~s~s--------~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 168 TEKFEIETRGEVKDLHFSTDGKVVAYIT--------GSSLEVISTVTGS-----CIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp EEEEEEECSSCCCEEEECTTSSEEEEEC--------SSCEEEEETTTCC-----EEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred cEEEEeCCCCceEEEEEccCCceEEecc--------ceeEEEEEeccCc-----ceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 765433 56788999999999999886 2445555433222 22222 2233456778999999999
Q ss_pred EEEEeeCC-ceeEEEEECCCCcccc--eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 526 VFRSTRTG-YKNLYIMDAEGGEGYG--LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 526 ~~~s~~~g-~~~l~~~d~~~g~~~~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
+..+...+ ...++.|++..+.... ...+..+...+..++|||||++||.++.+. .|++||+.++++....
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-------~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-------SIALVKLKDLSMSKIF 307 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-------CEEEEETTTTEEEEEE
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-------EEEEEECCCCcEEEEe
Confidence 98876432 3368888887654311 234455566678999999999999999885 8999999998766544
Q ss_pred ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
..+|...+..++|||||++|+..+.+.. |.+||+..
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS~S~D~t-----------------vrvw~ip~ 343 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVASVSAANT-----------------IHIIKLPL 343 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEEEETTSE-----------------EEEEECCT
T ss_pred cCcccCCEEEEEECCCCCEEEEEeCCCe-----------------EEEEEcCC
Confidence 3457888999999999999998888764 88888754
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.85 E-value=2.3e-19 Score=192.89 Aligned_cols=335 Identities=10% Similarity=-0.051 Sum_probs=218.4
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD 250 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~ 250 (721)
+| ||++|+..+..+ .++..+..+++...............|+|||++|+++..+ ..
T Consensus 65 s~--~g~~l~~~~~d~----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------------g~ 120 (420)
T 3vl1_A 65 EK--VGSHLYKARLDG----------HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTE------------GD 120 (420)
T ss_dssp EE--EETTEEEEEETT----------EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETT------------SC
T ss_pred ee--cCCeEEEEEcCC----------cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECC------------CC
Confidence 99 999888877653 6666676665544332222333444789999999997643 46
Q ss_pred EEEEEcCCCceeEEEe-ccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971 251 IYIFLTRDGTQRVKIV-ENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT 327 (721)
Q Consensus 251 i~~~d~~~g~~~~l~~-~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (721)
|.+|++.+++...... +... ..+|+||++++++ ...++.+.+|++.... ....+..+...+..++|
T Consensus 121 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALIS--SSQDMQLKIWSVKDGS---------NPRTLIGHRATVTDIAI 189 (420)
T ss_dssp EEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCC---------CCEEEECCSSCEEEEEE
T ss_pred EEEEeCCCcceeeecccccCccEEEEECCCCCEEEE--EeCCCeEEEEeCCCCc---------CceEEcCCCCcEEEEEE
Confidence 8899998877655532 2222 4589999987664 3337889999654332 45556667777889999
Q ss_pred ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406 (721)
Q Consensus 328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 406 (721)
+| +|++|+... .+..|.+||+.+++....... ..+...+....|.|++...
T Consensus 190 ~~-~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------- 241 (420)
T 3vl1_A 190 ID-RGRNVLSAS-----LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------- 241 (420)
T ss_dssp ET-TTTEEEEEE-----TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------------------
T ss_pred cC-CCCEEEEEc-----CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------------------
Confidence 99 999988754 334599999998874433211 1122222223333222110
Q ss_pred ccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCC-eEEEEecCCCC
Q 004971 407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVRE-AVVYTSGGPEF 480 (721)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~-~la~~~~~~~~ 480 (721)
...........++|+|+|+.|+... ++.|.+||+.+++..... ...+..+.|+|+++ .|+..+
T Consensus 242 ------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~----- 310 (420)
T 3vl1_A 242 ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY----- 310 (420)
T ss_dssp ------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-----
T ss_pred ------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-----
Confidence 0011112245679999999988875 778999999887743332 34678999999999 676665
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc-------ceEEC
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------GLHRL 553 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------~~~~l 553 (721)
.++.+.+|++..... ....+..+........++|++++|+..+. +..|++|++...+.. ....+
T Consensus 311 --~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~ 381 (420)
T 3vl1_A 311 --ENGMLAQWDLRSPEC----PVGEFLINEGTPINNVYFAAGALFVSSGF---DTSIKLDIISDPESERPAIEFETPTFL 381 (420)
T ss_dssp --TTSEEEEEETTCTTS----CSEEEEESTTSCEEEEEEETTEEEEEETT---TEEEEEEEECCTTCCSCEECTTSCEEE
T ss_pred --CCCeEEEEEcCCCcC----chhhhhccCCCCceEEEeCCCCEEEEecC---CccEEEEeccCCCCCccceeccCccEE
Confidence 568899998765432 34555553323333446678888887765 788999998764221 02223
Q ss_pred cCCCcCceeeEEccCCC---EEEEEEccCCCCCCceeEEEEecCC
Q 004971 554 TEGPWSDTMCNWSPDGE---WIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
..+...+..++|+|||+ .|+.....+ .+.+|++..
T Consensus 382 ~~~~~~v~~~~~s~~~~~~g~l~a~g~~g-------~~~~~~~~~ 419 (420)
T 3vl1_A 382 VSNDDAVSQFCYVSDDESNGEVLEVGKNN-------FCALYNLSN 419 (420)
T ss_dssp CCSSCCCCEEEEECCSSSSCEEEEEETTT-------EEEEEESCC
T ss_pred ccCCcceEEEEEccCCCCcceEEEEcCCc-------eEEEEeccC
Confidence 33445678899999999 777777664 788888754
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.84 E-value=4.9e-19 Score=188.75 Aligned_cols=273 Identities=11% Similarity=0.011 Sum_probs=190.5
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----------------CCCCcccCcEEcCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----------------SPKTHHLNPFISPDS 381 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----------------~~~~~~~~~~~Spdg 381 (721)
+...+..++||| ||++|+... +..+.+|++.+++........ .....+..++|+|||
T Consensus 63 h~~~V~~v~fsp-dg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 63 HTSVVCCVKFSN-DGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp CSSCCCEEEECT-TSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred CCCEEEEEEECC-CCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 444667899999 999998743 234899999988743221110 011135678999999
Q ss_pred CEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--e
Q 004971 382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--F 456 (721)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~ 456 (721)
+.|+....++. +.++++...... +.........++|+|+|++|+..+ ++.|.+||+.+++..... .
T Consensus 136 ~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 136 KFLATGAEDRL---------IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp SEEEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEcCCCe---------EEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 99998766554 556666544211 111222334579999999998885 788999999988754433 4
Q ss_pred cCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcceEEccCCCEEEEE
Q 004971 457 KNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 457 ~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~SpDg~~l~~~ 528 (721)
..+..++|+| +|+.|+..+ .++.++||++.... ....+ ..+...+..++|+|||++|+..
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s-------~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGS-------LDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEE-------TTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEc-------CCCcEEEEECCCCc-----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 5678899999 899988886 57889999865432 23333 3344567789999999999988
Q ss_pred EeeCCceeEEEEECCCCccc----------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 529 STRTGYKNLYIMDAEGGEGY----------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~----------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+. +..|.+||+.+.... ....+..+...+..++|+|++++|+.++.++ .|++||+.+++.
T Consensus 275 s~---d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-------~v~iwd~~~~~~ 344 (393)
T 1erj_A 275 SL---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-------GVLFWDKKSGNP 344 (393)
T ss_dssp ET---TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-------EEEEEETTTCCE
T ss_pred eC---CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC-------eEEEEECCCCeE
Confidence 86 788999998764310 0223334555677899999999999988875 899999999887
Q ss_pred EEeeecCCCCCcCCeEECC------CCCEEEEEEecC
Q 004971 599 RKLIQSGSAGRANHPYFSP------DGKSIVFTSDYG 629 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~Sp------DG~~l~~~~~~~ 629 (721)
..... +|...+..++|++ ++++|+..+.++
T Consensus 345 ~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 345 LLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp EEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred EEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 65554 3777788888875 688888777665
No 55
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.84 E-value=3.9e-19 Score=185.41 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=187.3
Q ss_pred CcccCceeecCCCCEEEEEEecCCC-CeeeEEEEECCCCceE--EeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTS-SYRHIELFDLVKNKFI--ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~--~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
..+..++||| ||+.|+..+..... -+..+++|+....... .......+...+..++|+||+ +|+..+.++.
T Consensus 31 ~~v~~~~fs~-dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~---- 104 (344)
T 4gqb_B 31 RQLEAARYRS-DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA---- 104 (344)
T ss_dssp SEEEEEEECT-TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE----
T ss_pred CCEEEEEECC-CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE----
Confidence 3567889999 99988865532211 1233444432211100 000001123446789999996 5666554443
Q ss_pred CCcceeEEEeccCCCCccee------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcC
Q 004971 397 DGNNQLLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDP 466 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~sp 466 (721)
+.++++..+...... .......++|+|||++|+..+ ++.|.+||+.+++..... ...+..+.|+|
T Consensus 105 -----v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 -----VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp -----EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred -----EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 556666554322111 122345679999999999885 778999999988765443 45778999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEccCCC-EEEEEEeeCCceeEEEEECC
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~ 543 (721)
++..++++. ..++.++||++.... ....+... ......++|+|++. .|+..+. +..|++||+.
T Consensus 180 ~~~~~l~s~------s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~ 245 (344)
T 4gqb_B 180 HKDSVFLSC------SEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTK 245 (344)
T ss_dssp SCTTEEEEE------ETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESC
T ss_pred CCCCceeee------ccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECC
Confidence 997655443 257899999876543 34444332 23466789999654 5565665 6789999999
Q ss_pred CCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971 544 GGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l 622 (721)
+++. +..+..+...+..++|+|||. .|+.++.++ .|++||+.+++..++. +|...+..++|||||+.|
T Consensus 246 ~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-------~i~vwd~~~~~~~~~~--~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 246 STSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-------SLAVLDSSLSELFRSQ--AHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp C--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS-------CEEEECTTCCEEEEEC--CCSSCEEEEEECSSSTTE
T ss_pred CCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-------eEEEEECCCCcEEEEc--CCCCCEEEEEEeCCCCeE
Confidence 8875 667777777788999999985 566677664 8999999998766543 478889999999999876
Q ss_pred EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
+.+...++ .|.+|++.+.
T Consensus 315 las~s~D~----------------~v~~w~v~~~ 332 (344)
T 4gqb_B 315 LTTVGWDH----------------QVVHHVVPTE 332 (344)
T ss_dssp EEEEETTS----------------CEEEEECCC-
T ss_pred EEEEcCCC----------------eEEEEECCCC
Confidence 65544333 3889988764
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.84 E-value=8.2e-19 Score=180.58 Aligned_cols=272 Identities=15% Similarity=0.141 Sum_probs=195.4
Q ss_pred EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+..+...+..++|+| +|++|+... .++.|.+|++.+++.... ...+...+..++|+|+++.|+....++.
T Consensus 18 ~~~gh~~~v~~~~~s~-~~~~l~s~~-----~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~- 88 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSP-NGEWLASSS-----ADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKT- 88 (312)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSE-
T ss_pred EEcccCCcEEEEEECC-CCCEEEEee-----CCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCCCE-
Confidence 3445666778899999 999988854 344599999998875433 3456677888999999999988765544
Q ss_pred CCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971 394 TREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV 467 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd 467 (721)
+.++++..+... +.........+.|+|+++.|+..+ ++.|.+||+.+++..... ...+..+.|+|+
T Consensus 89 --------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 89 --------LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp --------EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred --------EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 566666554211 111122234568999999998885 788999999988754433 456788999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
++.|+..+ .++.+.+|++.... ....+.. +......++|+|+|++|+..+. +..|++||+.+++
T Consensus 161 ~~~l~~~~-------~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~ 225 (312)
T 4ery_A 161 GSLIVSSS-------YDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGK 225 (312)
T ss_dssp SSEEEEEE-------TTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTE
T ss_pred CCEEEEEe-------CCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCc
Confidence 99998886 56889999875432 3333333 3345667899999999998886 7789999999887
Q ss_pred ccceEECcCCCcC--ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 547 GYGLHRLTEGPWS--DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 547 ~~~~~~l~~~~~~--~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
. +..+..+... .....++ +++++|+.++.++ .|++||+.+++....... +...+..++|+|+++.|+
T Consensus 226 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 226 C--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN-------LVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIA 295 (312)
T ss_dssp E--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTS-------CEEEEETTTCCEEEEECC-CSSCEEEEEECSSSSEEE
T ss_pred E--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCC-------EEEEEECCCchhhhhhhc-cCCcEEEEeecCcCCceE
Confidence 4 4444433222 1223444 6788888777664 899999999887665543 677788999999999998
Q ss_pred EEEe
Q 004971 624 FTSD 627 (721)
Q Consensus 624 ~~~~ 627 (721)
..+.
T Consensus 296 s~~~ 299 (312)
T 4ery_A 296 SAAL 299 (312)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8774
No 57
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=1.4e-18 Score=187.62 Aligned_cols=325 Identities=12% Similarity=0.063 Sum_probs=209.5
Q ss_pred cccCCCCCEEEEEecCCCCCCcc--ccee--eeeEEEEEcCCCceeEEE--eccC--CcceeccCCeEEEEeccCCCCcE
Q 004971 221 PAVSPSGKYTAVASYGNKGWDGE--VEML--STDIYIFLTRDGTQRVKI--VENG--GWPCWVDESTLFFHRKSEEDDWI 292 (721)
Q Consensus 221 p~~SPDG~~la~~~~~~~~w~~~--~~~~--~~~i~~~d~~~g~~~~l~--~~~~--~~~~ws~dg~l~~~~~~~~~g~~ 292 (721)
|.|+|+++.++++......-... .+.. ...||.++..++....+. .... ...+|+|+++++++ ...++.+
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~i 146 (433)
T 3bws_A 69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIP--LLEDEGM 146 (433)
T ss_dssp ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEE--BTTSSSE
T ss_pred eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEE--eCCCCeE
Confidence 34888888777654322100000 0001 127888888766544433 2222 25689998778774 3336778
Q ss_pred EEEEEecCCCcceeccccceEEeC------CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc
Q 004971 293 SVYKVILPQTGLVSTESVSIQRVT------PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV 366 (721)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~ 366 (721)
.+|... . + +..... .+...+..++|+| +|+.++... .+..|++||+++++..... .
T Consensus 147 ~~~d~~--~-g-------~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~-----~d~~v~~~d~~~~~~~~~~--~ 208 (433)
T 3bws_A 147 DVLDIN--S-G-------QTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQM-----QANAVHVFDLKTLAYKATV--D 208 (433)
T ss_dssp EEEETT--T-C-------CEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEG-----GGTEEEEEETTTCCEEEEE--E
T ss_pred EEEECC--C-C-------eEeeecCcccccccCCceeEEEEcC-CCEEEEEEC-----CCCEEEEEECCCceEEEEE--c
Confidence 888432 2 1 233322 2333566788999 987655532 3456999999988743322 3
Q ss_pred CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEe-------
Q 004971 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVE------- 437 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~------- 437 (721)
.+...+..++|+|+|+.+++..... ..++++++..+.. +... ......++|+|||+.|++..
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 209 LTGKWSKILLYDPIRDLVYCSNWIS--------EDISVIDRKTKLE-IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp CSSSSEEEEEEETTTTEEEEEETTT--------TEEEEEETTTTEE-EEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred CCCCCeeEEEEcCCCCEEEEEecCC--------CcEEEEECCCCcE-EEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 3456677899999999987765333 2477777755421 1111 11234578999999988874
Q ss_pred --CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971 438 --FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN 513 (721)
Q Consensus 438 --~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 513 (721)
++.|++||+.+++..... ...+..+.|+|+|+.++++.. .++.+.+|+++... ....+. .....
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~~~-----~~~~~~-~~~~~ 347 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKEKK-----VQKSIP-VFDKP 347 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTTTE-----EEEEEE-CSSSE
T ss_pred cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCCCc-----EEEEec-CCCCC
Confidence 458999999988765444 557788999999999988862 46777777765321 333333 44467
Q ss_pred cceEEccCCCEEEEEEeeCC------------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 514 AFPSVSPDGKWIVFRSTRTG------------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g------------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
..++|+|||++|++.....+ +..|++||+.+++. +..+.. ...+..++|+|||++|+++....
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d-- 422 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLD-- 422 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTT--
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCC--
Confidence 78999999999998876432 24899999998874 333333 34567899999999998887522
Q ss_pred CCCceeEEEEecCC
Q 004971 582 GSGSFEMYLIHPNG 595 (721)
Q Consensus 582 ~~~~~~i~~~d~~~ 595 (721)
..|++|++++
T Consensus 423 ----~~i~v~~~~~ 432 (433)
T 3bws_A 423 ----HQIRVYRRDG 432 (433)
T ss_dssp ----TEEEEEEETT
T ss_pred ----CeEEEEEecC
Confidence 2899998764
No 58
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=1e-18 Score=188.76 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=193.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee---cccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT---RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~---~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
....++|+| +++.++. .. .+..|++||+.+++..... ....+...+..++|+|+|+.++....++
T Consensus 124 ~~~~~~~s~-~~~~~~~-~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~------ 191 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIP-LL----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN------ 191 (433)
T ss_dssp CBCCCEESS-SSEEEEE-BT----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT------
T ss_pred CceEEEEeC-CCeEEEE-eC----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC------
Confidence 345789999 8864443 22 3345999999998865432 2234455677789999987666543222
Q ss_pred CcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971 398 GNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV 471 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l 471 (721)
.+.++++.++...... .......++|+|||+.+++.. ++.|++||+.+++..... ...+..++|+|||+.|
T Consensus 192 ---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 192 ---AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp ---EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred ---EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence 4677776654221111 122334579999999987774 678999999888754443 3457789999999999
Q ss_pred EEEecCCCCCC-CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 472 VYTSGGPEFAS-ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 472 a~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
++...+..... .++.+.+|++. +. +......+......++|+|||++|++.... +..|++||+.+++. .
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~--~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~~--~ 338 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMD--KE----KLIDTIGPPGNKRHIVSGNTENKIYVSDMC--CSKIEVYDLKEKKV--Q 338 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETT--TT----EEEEEEEEEECEEEEEECSSTTEEEEEETT--TTEEEEEETTTTEE--E
T ss_pred EEEECCCCccccCCCeEEEEECC--CC----cEEeeccCCCCcceEEECCCCCEEEEEecC--CCEEEEEECCCCcE--E
Confidence 98874211111 24455555543 32 333333333356678999999998887643 56899999998874 3
Q ss_pred EECcCCCcCceeeEEccCCCEEEEEEccCCC--------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l 622 (721)
..+. ....+..++|+|||+.|+++...... ......|++||+.+++...... ....+..++|+|||++|
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNRYL 415 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSCEE
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCCEE
Confidence 3333 34456789999999999888764210 0002389999999988776654 34567889999999999
Q ss_pred EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
++.+..++ .|++|++++
T Consensus 416 ~~~~~~d~----------------~i~v~~~~~ 432 (433)
T 3bws_A 416 VISDFLDH----------------QIRVYRRDG 432 (433)
T ss_dssp EEEETTTT----------------EEEEEEETT
T ss_pred EEEECCCC----------------eEEEEEecC
Confidence 88775443 488998764
No 59
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.83 E-value=3.4e-19 Score=185.85 Aligned_cols=270 Identities=12% Similarity=0.050 Sum_probs=185.3
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec--cCCCCcc----eecccCCCCceeCcCCCEEEEE-eCCcE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--KSPLPDI----SLFRFDGSFPSFSPKGDRIAFV-EFPGV 441 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~----~~~~~~~~~~~~SpDG~~la~~-~~~~l 441 (721)
...+..++|||||+.|+..+ +.....|++ .++.... ....... .........++|+||++ |+.. .++.|
T Consensus 30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~v 105 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGAS-SLSGRCWAG--SLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGAV 105 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEE-CCSSSCCCE--EEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSEE
T ss_pred cCCEEEEEECCCCCEEEEEe-CCceEEeec--eeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCEE
Confidence 44567789999999888765 333222222 2233221 1111111 11112244579999974 5554 58899
Q ss_pred EEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971 442 YVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514 (721)
Q Consensus 442 ~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 514 (721)
.+||+.+++..... ...+..++|+|||++|+..+ .++.++||++.... ....+..+...+.
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i~iwd~~~~~-----~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICIKVWDLAQQV-----VLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEcCcCCceE
Confidence 99999887642221 35688999999999999887 57889999876432 5566777777888
Q ss_pred ceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEE
Q 004971 515 FPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 515 ~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~ 590 (721)
.++|+|+++. |+..+. +..|++||+.+++. ...+.. +...+..++|+|++ +.|+.+..++ .|++
T Consensus 174 ~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-------~v~~ 241 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSE---DNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-------TVSL 241 (344)
T ss_dssp EEEECSSCTTEEEEEET---TSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTS-------EEEE
T ss_pred EEEecCCCCCceeeecc---ccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCC-------cEEE
Confidence 9999999975 455554 67899999998875 445532 23346789999965 5566666664 8999
Q ss_pred EecCCCceEEeeecCCCCCcCCeEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCC
Q 004971 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~ 669 (721)
||+.+++...... ++...+..++|+|||. +|+..+.+. .|++||+.+++..++..|...+.
T Consensus 242 wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~-----------------~i~vwd~~~~~~~~~~~H~~~V~ 303 (344)
T 4gqb_B 242 VDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDC-----------------SLAVLDSSLSELFRSQAHRDFVR 303 (344)
T ss_dssp EESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTS-----------------CEEEECTTCCEEEEECCCSSCEE
T ss_pred EECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCC-----------------eEEEEECCCCcEEEEcCCCCCEE
Confidence 9999887655444 3777889999999995 455555544 39999999999888888888899
Q ss_pred CceecCC---cCCccccc
Q 004971 670 TPAWGPR---FIRPVDVE 684 (721)
Q Consensus 670 ~~~~sp~---~l~~~~~~ 684 (721)
..+|+|+ +++....|
T Consensus 304 ~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 304 DATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp EEEECSSSTTEEEEEETT
T ss_pred EEEEeCCCCeEEEEEcCC
Confidence 9999995 34455433
No 60
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=2.2e-18 Score=183.38 Aligned_cols=266 Identities=12% Similarity=0.150 Sum_probs=185.7
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eecccCCCC
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSF 423 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 423 (721)
.+..|++||+.+++...... . ...+..++|+|||++|++..... ..+.++++.++.... .........
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~v~~ 78 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIP--V-GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNNVIATVPAGSSPQG 78 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTEEEEEEECSSSEEE
T ss_pred CCCEEEEEECCCCeEEEEee--c-CCCcceEEECCCCCEEEEECCCC--------CeEEEEECCCCeEEEEEECCCCccc
Confidence 34569999999987544332 2 23467899999999987755333 246777775542111 111223445
Q ss_pred ceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
++|+|||++|++.. ++.|++||+.+++..... ...+..++|+|||+.|+++.. .++.+.+|++.. .
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~--~-- 148 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVT--K-- 148 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT--T--
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC--C--
Confidence 78999999998874 578999999988765544 456778999999999987762 456677776533 2
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.....+..+ .....++|+|||++|++.... +..|++||+.+++. ...+ .....+..++|+|||++|+++..+.
T Consensus 149 -~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 149 -AVINTVSVG-RSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSV--IDTV-KVEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp -EEEEEEECC-SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEE--EEEE-ECSSEEEEEEECTTSSEEEEEEECS
T ss_pred -cEEEEEecC-CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCeE--EEEE-ecCCCccceEECCCCCEEEEEecCc
Confidence 133333333 356788999999999776543 56799999998874 3333 3334557899999999999988521
Q ss_pred CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
....|++||+.+++....... ...+..++|+|||++|+++...++ .|++||+.+++..
T Consensus 222 ----~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~----------------~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 222 ----YFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFXN----------------TVSVIDTATNTIT 279 (391)
T ss_dssp ----SCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEE
T ss_pred ----CCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCCC----------------EEEEEECCCCcEE
Confidence 224899999998876665542 344677899999999987765543 4999999988764
Q ss_pred E
Q 004971 660 R 660 (721)
Q Consensus 660 ~ 660 (721)
.
T Consensus 280 ~ 280 (391)
T 1l0q_A 280 A 280 (391)
T ss_dssp E
T ss_pred E
Confidence 3
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.83 E-value=2.3e-19 Score=192.91 Aligned_cols=304 Identities=8% Similarity=-0.014 Sum_probs=204.4
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|||+.+++. ..++.+.+|...... ....+..+ .......++| +|++|+... .+..|.
T Consensus 61 ~~~~s~~g~~l~~~--~~d~~v~i~d~~~~~---------~~~~~~~~-~~~~~~~~~~-~~~~l~~~~-----~dg~i~ 122 (420)
T 3vl1_A 61 GNTFEKVGSHLYKA--RLDGHDFLFNTIIRD---------GSKMLKRA-DYTAVDTAKL-QMRRFILGT-----TEGDIK 122 (420)
T ss_dssp TCEEEEEETTEEEE--EETTEEEEEECCSEE---------TTTTSCSC-CEEEEEEECS-SSCEEEEEE-----TTSCEE
T ss_pred ceeeeecCCeEEEE--EcCCcEEEEEecccc---------eeeEEecC-CceEEEEEec-CCCEEEEEE-----CCCCEE
Confidence 56899998755532 226788888543221 11111111 2233446899 999988864 334599
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP 428 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp 428 (721)
+||+.+++.... ...+...+..++|+|+++.|+....++. +.++++..+... +.........++|+|
T Consensus 123 iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~---------i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 123 VLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQDMQ---------LKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp EECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred EEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCCCe---------EEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 999998875433 3456778889999999999887665443 667777654322 222233345679999
Q ss_pred CCCEEEEEe-CCcEEEEECCCCceEEEee---------------------------cCceeeEEcCCCCeEEEEecCCCC
Q 004971 429 KGDRIAFVE-FPGVYVVNSDGSNRRQVYF---------------------------KNAFSTVWDPVREAVVYTSGGPEF 480 (721)
Q Consensus 429 DG~~la~~~-~~~l~v~d~~~g~~~~l~~---------------------------~~~~~~~~spdg~~la~~~~~~~~ 480 (721)
||+.|+..+ ++.|.+||+.+++...... ..+..+.|+|+|+.|+..+
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----- 266 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH----- 266 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-----
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-----
Confidence 999999885 6789999999887544331 3345677899999998886
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcC-CC
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GP 557 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~ 557 (721)
.++.+.+|++.... ....+. .+...+..++|+|+++ +|+..+. +..|++||+.+++. .+..+.. +.
T Consensus 267 --~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~-~~~~~~~~~~ 335 (420)
T 3vl1_A 267 --VSGVITVHNVFSKE-----QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPEC-PVGEFLINEG 335 (420)
T ss_dssp --TTSCEEEEETTTCC-----EEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEEESTT
T ss_pred --CCCeEEEEECCCCc-----eeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCcC-chhhhhccCC
Confidence 57889999876543 333333 3446778899999999 7877776 67899999998752 1344443 33
Q ss_pred cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc----------eEEeeecCCCCCcCCeEECCCCC---EEEE
Q 004971 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG----------LRKLIQSGSAGRANHPYFSPDGK---SIVF 624 (721)
Q Consensus 558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~~~SpDG~---~l~~ 624 (721)
..+..+ ++|+|+.|+.++.++ .|++|++...+ ...+. .+...+..++|+|||+ .|+.
T Consensus 336 ~~v~~~-~~~~~~~l~s~~~d~-------~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a 405 (420)
T 3vl1_A 336 TPINNV-YFAAGALFVSSGFDT-------SIKLDIISDPESERPAIEFETPTFLV--SNDDAVSQFCYVSDDESNGEVLE 405 (420)
T ss_dssp SCEEEE-EEETTEEEEEETTTE-------EEEEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEE
T ss_pred CCceEE-EeCCCCEEEEecCCc-------cEEEEeccCCCCCccceeccCccEEc--cCCcceEEEEEccCCCCcceEEE
Confidence 344444 667888887777664 89999987631 22221 2556788899999999 7777
Q ss_pred EEecC
Q 004971 625 TSDYG 629 (721)
Q Consensus 625 ~~~~~ 629 (721)
...++
T Consensus 406 ~g~~g 410 (420)
T 3vl1_A 406 VGKNN 410 (420)
T ss_dssp EETTT
T ss_pred EcCCc
Confidence 66654
No 62
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=3.1e-18 Score=179.05 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=187.2
Q ss_pred cCceeecCCCCEEEEEEecC----CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 323 FTPATSPGNNKFIAVATRRP----TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 323 ~~~~~sp~dG~~la~~~~~~----g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
..+.+ ||++|+|..... +.....|+++|+++++.+.+ ..+..+.|||||++|+|....... +
T Consensus 18 ~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~----~ 83 (347)
T 2gop_A 18 SDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEK----K 83 (347)
T ss_dssp EEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTT----T
T ss_pred ccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCC----C
Confidence 45556 899999975432 22367799999999886665 234568999999999998876521 1
Q ss_pred cceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----------------------------CCcEEEEECCCC
Q 004971 399 NNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----------------------------FPGVYVVNSDGS 449 (721)
Q Consensus 399 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----------------------------~~~l~v~d~~~g 449 (721)
...+++.++.++. ..+..... ...+.|||||++|+|.. ...|+++++.++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 1568888887652 22332223 55689999999999984 256999999998
Q ss_pred ce-EEEeecCceeeEEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971 450 NR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS-EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527 (721)
Q Consensus 450 ~~-~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~ 527 (721)
+. +.+....+..+.|+||| ++++........... ...||.++ .+ ..+.+..+ ... ..+||||++|++
T Consensus 163 ~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~~-----~~~~l~~~-~~~--~~~spdg~~l~~ 231 (347)
T 2gop_A 163 EVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-DG-----KEEKMFEK-VSF--YAVDSDGERILL 231 (347)
T ss_dssp EEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-TT-----EEEEEEEE-ESE--EEEEECSSCEEE
T ss_pred eEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeC-CC-----ceEEeccC-cce--eeECCCCCEEEE
Confidence 87 66663277889999999 555542110000002 67888888 32 55666654 333 344999999999
Q ss_pred EEeeC-----CceeEEEEECCCCcccceEECcCC-CcCcee-eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 528 RSTRT-----GYKNLYIMDAEGGEGYGLHRLTEG-PWSDTM-CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 528 ~s~~~-----g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
.+... ...+||++| +++ ...+... ...+.. +.|+ || |++..... +...|| ++ +++.++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~----~~~~l~-~~--~g~~~~ 296 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-GK--VYFTLFEE----GSVNLY-IW--DGEIKP 296 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-TE--EEEEEEET----TEEEEE-EE--SSSEEE
T ss_pred EEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEEc-Cc--EEEEEecC----CcEEEE-Ec--CCceEE
Confidence 98643 245899999 566 5666654 344555 8999 88 55555442 556777 77 466666
Q ss_pred eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971 601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665 (721)
Q Consensus 601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~ 665 (721)
++. ..+.+..++|+| + +++.....+. ..+||.+| ++.++||.+.
T Consensus 297 ~~~--~~~~v~~~~~s~--~-~~~~~~~~~~-------------~~~l~~~~---g~~~~lt~~n 340 (347)
T 2gop_A 297 IAK--GRHWIMGFDVDE--I-VVYLKETATR-------------LRELFTWD---GEEKQLTDYN 340 (347)
T ss_dssp EEC--SSSEEEEEEESS--S-EEEEEECSSS-------------CCEEEEES---SSEEECCCTT
T ss_pred Eec--CCCeEEeeeeeC--c-EEEEEcCCCC-------------hHHheEeC---CcEEEecccc
Confidence 654 355677889999 4 4444443332 13699887 6788899754
No 63
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.82 E-value=5.8e-18 Score=194.30 Aligned_cols=304 Identities=9% Similarity=-0.016 Sum_probs=210.5
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
..+| ||++++|.....+.....||+.+..+++.+.+.... ++...+..++|||||++|+|.....+... ..
T Consensus 74 ~p~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~----~~ 148 (695)
T 2bkl_A 74 TPSR-RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE----AV 148 (695)
T ss_dssp CCEE-ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC----CE
T ss_pred CCEE-ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce----EE
Confidence 3468 999999988776655677899998877766665321 12234678999999999999887665321 57
Q ss_pred eEEEeccCCCCc-ceeccc-CCCCceeCcCCCEEEEEeC-C-------------cEEEEECCCCce--EEEee-----cC
Q 004971 402 LLLENIKSPLPD-ISLFRF-DGSFPSFSPKGDRIAFVEF-P-------------GVYVVNSDGSNR--RQVYF-----KN 458 (721)
Q Consensus 402 l~~~~~~~~~~~-~~~~~~-~~~~~~~SpDG~~la~~~~-~-------------~l~v~d~~~g~~--~~l~~-----~~ 458 (721)
|++.++.++... ...... ....++|||||+.|+|... . .|++|++.++.. +.+.. ..
T Consensus 149 i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~ 228 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT 228 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred EEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence 899998776432 111211 1256899999999999852 2 299999988763 44441 24
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeE
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNL 537 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l 537 (721)
...+.|||||++|++.+.. ......||.++..++ ..+.|.........+.| +||+ |++.++.+ +...|
T Consensus 229 ~~~~~~SpDG~~l~~~~~~-----~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILR-----GWSENDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRV 297 (695)
T ss_dssp EEEEEECTTSCCEEEEEEE-----TTTEEEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred EEEEEECCCCCEEEEEEeC-----CCCceEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence 5689999999999998731 115677888866543 56777766555566666 7888 88887654 46799
Q ss_pred EEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971 538 YIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF 615 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 615 (721)
+++|+++++......+..+ ...+..++|+ +.+|++..... +...|++++++++..+.+... ..+.+..+++
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~ 370 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD----ATSEVRVATLKGKPVRTVQLP-GVGAASNLMG 370 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEET----TEEEEEEEETTCCEEEECCCS-SSSEECCCBS
T ss_pred EEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC----CEEEEEEEeCCCCeeEEecCC-CCeEEEEeec
Confidence 9999988763223445433 2334567777 44566666553 667899999876655555321 2455677889
Q ss_pred CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665 (721)
Q Consensus 616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~ 665 (721)
+|||+.|++....... ++.||.||+++++.+.++...
T Consensus 371 s~d~~~l~~~~ss~~~-------------P~~v~~~d~~~g~~~~l~~~~ 407 (695)
T 2bkl_A 371 LEDLDDAYYVFTSFTT-------------PRQIYKTSVSTGKSELWAKVD 407 (695)
T ss_dssp CTTCSEEEEEEEETTE-------------EEEEEEEETTTCCEEEEEECC
T ss_pred CCCCCEEEEEEcCCCC-------------CCEEEEEECCCCcEEEEecCC
Confidence 9999999887765433 357999999999888887633
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.82 E-value=4.4e-18 Score=179.23 Aligned_cols=297 Identities=12% Similarity=0.069 Sum_probs=190.0
Q ss_pred ceeccCCeEEEEeccCC-----CCcEEEEEEecCCCcceeccccceE--EeCCCCCcccCceeecCCCCEEEEEEecC--
Q 004971 272 PCWVDESTLFFHRKSEE-----DDWISVYKVILPQTGLVSTESVSIQ--RVTPPGLHAFTPATSPGNNKFIAVATRRP-- 342 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~-----~g~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sp~dG~~la~~~~~~-- 342 (721)
.+|+|||+++++...+. +..+.+|++........ ....... .+..+.. ...++++ +++.++...+..
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-~~~~~~~~~~l~~~~~--~v~s~~~-~~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-EQFHILSEFALEDNDD--SPTAIDA-SKGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-HHEEEEEEEECCTTSC--CCCEEEE-ETTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-eeeeeeeEEEccCCCC--ceEEEEe-CCCEEEEEECCCcc
Confidence 47999999887532211 22478887654432100 0000111 1222222 2346677 888877654322
Q ss_pred ----CCCeeeEEEEECCCCce--EEeec-----ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971 343 ----TSSYRHIELFDLVKNKF--IELTR-----FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411 (721)
Q Consensus 343 ----g~~~~~l~l~dl~tg~~--~~l~~-----~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (721)
+..+..+++|++.+.+. ..+.. ...+...+..++|||||+.|++++.... ..+.++++.+..
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d-------~~i~iwd~~~~~ 168 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP-------AIMRIIDPSDLT 168 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS-------CEEEEEETTTTE
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC-------CEEEEeECCCCc
Confidence 34456688888765432 11111 1112233556899999999988765444 346777776553
Q ss_pred Ccce-ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971 412 PDIS-LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESS 485 (721)
Q Consensus 412 ~~~~-~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 485 (721)
.... ........++|||||++|+..++..+.+|+..++...... ...+..++|+|||+.++..+.. ...
T Consensus 169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d-----~~~ 243 (365)
T 4h5i_A 169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK-----KGK 243 (365)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES-----SSC
T ss_pred EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC-----Ccc
Confidence 2211 1233456689999999999998888999998877654322 2356789999999999988742 223
Q ss_pred cEEEEEEEccCCC-CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceee
Q 004971 486 EVDIISINVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMC 563 (721)
Q Consensus 486 ~~~i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~ 563 (721)
.+.++.++..... .......+..+...+..++|||||++|+..+. +..|++||+.+++. +.. +..+...+..+
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~---D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN---DNSIALVKLKDLSM--SKIFKQAHSFAITEV 318 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEE--EEEETTSSSSCEEEE
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC---CCEEEEEECCCCcE--EEEecCcccCCEEEE
Confidence 3344444433220 00112345555567788999999999999987 78899999999875 555 35577788999
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
+|||||++|+.++.+. .|.+|++..+
T Consensus 319 ~fSpdg~~laS~S~D~-------tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAAN-------TIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTS-------EEEEEECCTT
T ss_pred EECCCCCEEEEEeCCC-------eEEEEEcCCC
Confidence 9999999999999886 8999998543
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.82 E-value=1.2e-18 Score=181.97 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=194.2
Q ss_pred EeCCCCCcccCcee-----ecCCCCEEEEEEecCCCCeeeEEEEECCCCc-----eEEeecccCCCCcccCcEEcCCCCE
Q 004971 314 RVTPPGLHAFTPAT-----SPGNNKFIAVATRRPTSSYRHIELFDLVKNK-----FIELTRFVSPKTHHLNPFISPDSSR 383 (721)
Q Consensus 314 ~~~~~~~~~~~~~~-----sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-----~~~l~~~~~~~~~~~~~~~Spdg~~ 383 (721)
.+.+|...+..++| ++.|+++|+..+ .+..|++||+.+++ .........|...+..++|+|++..
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 34455555666776 432788887754 34569999997543 1223334566777888999999999
Q ss_pred EEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----
Q 004971 384 VGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----- 455 (721)
Q Consensus 384 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----- 455 (721)
|+..+.++. +.++++..+.. .+.........++|+|||++|+..+ ++.|.+||+.+.....+.
T Consensus 91 l~s~s~D~~---------v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 161 (343)
T 2xzm_R 91 AISSSWDKT---------LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161 (343)
T ss_dssp EEEEETTSE---------EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred EEEEcCCCc---------EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence 987665554 56666655422 1111223345579999999998885 789999999854433322
Q ss_pred ecCceeeEEcCCC----------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971 456 FKNAFSTVWDPVR----------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525 (721)
Q Consensus 456 ~~~~~~~~~spdg----------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l 525 (721)
...+..+.|+|++ ..|+..+ .++.+.+|+ ... .....+..+...+..++|+|||++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-------~d~~i~iwd--~~~----~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVG-------WDGRLKVWN--TNF----QIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEE-------TTSEEEEEE--TTT----EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEc-------CCCEEEEEc--CCC----ceeEEEcCccccceEEEECCCCCEE
Confidence 2356788999987 5677665 578899998 222 2445566666778889999999999
Q ss_pred EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE---ee
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK---LI 602 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~---l~ 602 (721)
+..+. +..|++||+...... ...+ .....+..++|+||++.|+.+... .|++|++.+++... +.
T Consensus 229 ~sgs~---dg~v~iwd~~~~~~~-~~~~-~~~~~v~~v~~sp~~~~la~~~d~--------~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 229 ATGGK---DKKLLIWDILNLTYP-QREF-DAGSTINQIAFNPKLQWVAVGTDQ--------GVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp EEEET---TCEEEEEESSCCSSC-SEEE-ECSSCEEEEEECSSSCEEEEEESS--------CEEEEESSSCCSCSEEECC
T ss_pred EEEcC---CCeEEEEECCCCccc-ceee-cCCCcEEEEEECCCCCEEEEECCC--------CEEEEEeCCCCCCceEEee
Confidence 99887 789999999433211 2222 223346889999999988765543 69999998765432 21
Q ss_pred ec---------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 603 QS---------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 603 ~~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.. ++...+..++|+|||++|+..+.++ .|.+|+++++
T Consensus 296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg-----------------~v~~w~~~~g 341 (343)
T 2xzm_R 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG-----------------VIRTFSFETS 341 (343)
T ss_dssp CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS-----------------EEEEEEEEEE
T ss_pred cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc-----------------eEEEEEEEcc
Confidence 00 2344567899999999998877665 3888887654
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=5.1e-19 Score=191.36 Aligned_cols=297 Identities=13% Similarity=0.082 Sum_probs=198.0
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~ 396 (721)
+...+..++|+|.+++.|+... .++.|.+||+.+++...+....+|...+..++|+| |++.|+..+.++.
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~---- 188 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT---- 188 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC----
T ss_pred CCCCEEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE----
Confidence 3445678999993345666643 44569999999887555555566778889999998 6788887665554
Q ss_pred CCcceeEEEeccCCCCcceec----ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCC
Q 004971 397 DGNNQLLLENIKSPLPDISLF----RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVRE 469 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~ 469 (721)
+.++++.+........ ......++|+|||+.|+..+ ++.|++||+.+.....+. ...+..+.|+|+++
T Consensus 189 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 189 -----TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp -----EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred -----EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence 5555665442111111 11123578999999998884 788999999876655444 56788999999998
Q ss_pred eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
.++++. ..++.+.||++..... .........+...+..++|+|||++|+..+. +..|++||+.+++.
T Consensus 264 ~~~~s~------s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~---D~~i~iwd~~~~~~-- 330 (435)
T 4e54_B 264 WFLATA------SVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFSPDGARLLTTDQ---KSEIRVYSASQWDC-- 330 (435)
T ss_dssp SEEEEE------ETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBCTTSSEEEEEES---SSCEEEEESSSSSS--
T ss_pred eEEEEe------cCcceeeEEecccccc--cceEEEeeeccccccceeECCCCCeeEEEcC---CCEEEEEECCCCcc--
Confidence 766554 2578899998765332 0111122334456778899999999998887 78899999998774
Q ss_pred eEECcCCC------cCceeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCCCceEEeeecCCCCCcCCe-EECC
Q 004971 550 LHRLTEGP------WSDTMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP-YFSP 617 (721)
Q Consensus 550 ~~~l~~~~------~~~~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-~~Sp 617 (721)
+..+..+. .......|+|++..++++...... ......|++||..+++.......++...+..+ +|||
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 33333221 123456899999888877643211 11234699999999887655443355566666 6999
Q ss_pred CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 618 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
||++|+..+ ++ .|++|+++.++.+
T Consensus 411 dg~~lasg~-d~-----------------~i~iW~~~~gk~r 434 (435)
T 4e54_B 411 MGDTLASAM-GY-----------------HILIWSQQEARTR 434 (435)
T ss_dssp TSSCEEEEC-SS-----------------EEEECCCC-----
T ss_pred CCCEEEEEc-CC-----------------cEEEEECCcCeee
Confidence 999887543 32 3999999888765
No 67
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.82 E-value=1.6e-18 Score=180.92 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=193.9
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
...|++|++++++ ...++.+.+|...... ....+..+...+..++|+| +|++|+... .+..+.
T Consensus 60 ~~~~s~d~~~l~s--~s~Dg~v~iWd~~~~~---------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~-----~d~~v~ 122 (340)
T 1got_B 60 AMHWGTDSRLLLS--ASQDGKLIIWDSYTTN---------KVHAIPLRSSWVMTCAYAP-SGNYVACGG-----LDNICS 122 (340)
T ss_dssp EEEECTTSSEEEE--EETTTEEEEEETTTCC---------EEEEEECSSSCEEEEEECT-TSSEEEEEE-----TTCEEE
T ss_pred EEEECCCCCEEEE--EeCCCcEEEEECCCCC---------cceEeecCCccEEEEEECC-CCCEEEEEe-----CCCeEE
Confidence 3479999987774 3347899999543322 4444555555677889999 999988754 345699
Q ss_pred EEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCcee
Q 004971 351 LFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSF 426 (721)
Q Consensus 351 l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 426 (721)
+||+.+++ .........+...+....|++++. ++..+.++. +.++++..+... +.........++|
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~---------i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT---------CALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc---------EEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 99998753 223333445666777888998875 555444433 566666554211 1112223445799
Q ss_pred CcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971 427 SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA 502 (721)
Q Consensus 427 SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 502 (721)
+|+++.++..+ ++.|.+||+.++...... ...+..++|+|+|+.|+..+ .++.++||++.... .
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-------~d~~v~iwd~~~~~-----~ 260 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-------DDATCRLFDLRADQ-----E 260 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE-----E
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCc-----E
Confidence 99999888875 889999999888755443 45678999999999999887 57899999875432 2
Q ss_pred eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
...+.... ..+..++|+|||++|+..+. +..|++||..+++. +..+..+...+..++|+|||+.|+.++.++
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~- 334 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD---DFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS- 334 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECC---CCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCc-
Confidence 33333222 34677899999999998887 78899999988775 566767777788999999999999998875
Q ss_pred CCCCceeEEEEe
Q 004971 581 PGSGSFEMYLIH 592 (721)
Q Consensus 581 ~~~~~~~i~~~d 592 (721)
.|++||
T Consensus 335 ------~i~iWd 340 (340)
T 1got_B 335 ------FLKIWN 340 (340)
T ss_dssp ------CEEEEC
T ss_pred ------cEEecC
Confidence 788886
No 68
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.82 E-value=3.9e-19 Score=186.76 Aligned_cols=287 Identities=8% Similarity=-0.020 Sum_probs=186.6
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--c----eecccCCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--I----SLFRFDGS 422 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~~~ 422 (721)
...|++.... ...|...+..++|||||++|+..+.+.. ..|+ ..+++++...+... + ........
T Consensus 28 ~~~w~~p~~~------p~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd--~~v~~~~~~~~~~~~~~~~~~~~~~~~V~ 98 (357)
T 4g56_B 28 GSAWGRPVTA------PACMEVQIGAVRYRRDGALLLAASSLSS-RTWG--GSIWVFKDPEGAPNESLCTAGVQTEAGVT 98 (357)
T ss_dssp ------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC--EEEEEESSCC---CGGGCSEEEECSSCEE
T ss_pred ccccCCCCCC------cccccCCEEEEEECCCCCEEEEEcCCCC-cccc--CeEEEEECCCCCcceeEecccCCCCCCEE
Confidence 4567665432 1335667888999999999998775432 2222 24566655433211 1 11122244
Q ss_pred CceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 423 ~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
.++|+||++.|+...++.|.+||+.+++...+. ...+..++|+|||++|+..+ .++.+.||++...
T Consensus 99 ~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-------~dg~v~iwd~~~~ 171 (357)
T 4g56_B 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-------KDFSVKVWDLSQK 171 (357)
T ss_dssp EEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTT
T ss_pred EEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCC
Confidence 579999997766666889999999877643211 35678999999999999886 5788999986543
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIA 573 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~ 573 (721)
. ....+..+...+..++|+|+++. ++..+. +..|++||+.+++.............+..++|+|++. .|+
T Consensus 172 ~-----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 172 A-----VLKSYNAHSSEVNCVAACPGKDTIFLSCGE---DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp E-----EEEEECCCSSCEEEEEECTTCSSCEEEEET---TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred c-----EEEEEcCCCCCEEEEEEccCCCceeeeecc---CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 2 45666667777888999999874 455554 6789999999887522222233444567899999864 566
Q ss_pred EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE-EEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS-IVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
.+..+. .|++||+.+++..+... .+...+..++|+|||+. |+..+.+. .|++||
T Consensus 244 ~g~~d~-------~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~-----------------~i~iwd 298 (357)
T 4g56_B 244 CGDETG-------NVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDC-----------------TVAVLD 298 (357)
T ss_dssp EEESSS-------CEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTS-----------------CEEEEC
T ss_pred Eeeccc-------ceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCC-----------------EEEEEE
Confidence 666654 79999998887655443 26677889999999864 55555444 399999
Q ss_pred cCCCCeEEeccCCCCCCCceecC-C--cCCccccc
Q 004971 653 LDGSDLKRLTQNSFEDGTPAWGP-R--FIRPVDVE 684 (721)
Q Consensus 653 ~~~~~~~~lt~~~~~~~~~~~sp-~--~l~~~~~~ 684 (721)
+++++..+...|...+...+|+| + .|+....|
T Consensus 299 ~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 299 ADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp TTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 99998877777888889999998 3 56666544
No 69
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.5e-18 Score=195.16 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=185.5
Q ss_pred ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC---CcceeccCCeEEEEecc-CCCCcEE
Q 004971 218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG---GWPCWVDESTLFFHRKS-EEDDWIS 293 (721)
Q Consensus 218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~---~~~~ws~dg~l~~~~~~-~~~g~~~ 293 (721)
....+|||||++|||++.+++ ..+||.+ ++|+.++++.... ..++|+|| +++|.... ..+....
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g---------~~~lw~~--~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG---------SVNAYLY--DGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT---------EEEEEEE--ETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred hheeecCCCCCeEEEEEccCC---------ceeEEEE--cCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 344579999999999876443 3567764 6888888875543 26799999 87775432 2345668
Q ss_pred EEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971 294 VYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373 (721)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~ 373 (721)
||.+...+.+ ...+++.... ....+||| ||+.+++++...+. +.+||+++++.+.+.... . .
T Consensus 92 l~~~~~~~~g-------~~~~l~~~~~-~~~~~~s~-dg~~~~~~s~~~~~----~~l~d~~~g~~~~l~~~~---~--~ 153 (582)
T 3o4h_A 92 LFKVNTSRPG-------EEQRLEAVKP-MRILSGVD-TGEAVVFTGATEDR----VALYALDGGGLRELARLP---G--F 153 (582)
T ss_dssp EEEEETTSTT-------CCEECTTSCS-BEEEEEEE-CSSCEEEEEECSSC----EEEEEEETTEEEEEEEES---S--C
T ss_pred EEEEeccCCC-------ccccccCCCC-ceeeeeCC-CCCeEEEEecCCCC----ceEEEccCCcEEEeecCC---C--c
Confidence 8866651111 2335544432 23568999 99998887654332 558999988766665321 1 4
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ 453 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~ 453 (721)
.++|||||++|++.+.+... ...|++||+++++.+.
T Consensus 154 ~~~~spDG~~la~~~~~~~~--------------------------------------------~~~i~~~d~~~g~~~~ 189 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGG--------------------------------------------RVSLFTSNLSSGGLRV 189 (582)
T ss_dssp EEEEEEETTEEEEEEEEETT--------------------------------------------EEEEEEEETTTCCCEE
T ss_pred eEEECCCCCEEEEEEEcCCC--------------------------------------------CeEEEEEcCCCCCceE
Confidence 56677777766665433220 0348888888888777
Q ss_pred Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE--------EccCCC
Q 004971 454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS--------VSPDGK 523 (721)
Q Consensus 454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~SpDg~ 523 (721)
+. .+.+..++|||||++|+... .++...||.++.+++ ....+..+...+..++ |||||
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~-------~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg- 257 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLE-------TAREARLVTVDPRDG----SVEDLELPSKDFSSYRPTAITWLGYLPDG- 257 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEE-------CSSCEEEEEECTTTC----CEEECCCSCSHHHHHCCSEEEEEEECTTS-
T ss_pred eecCCCccccceECCCCCEEEEcc-------CCCeeEEEEEcCCCC----cEEEccCCCcChhhhhhccccceeEcCCC-
Confidence 76 34567899999999999433 345567888887764 4454444444556677 99999
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
++++....+ ..+.+|++ |+ ..... ...+..++|| ||+.++..+... ....||+++..+ +.+++
T Consensus 258 ~~~~~~~~~--g~~~l~~~--g~---~~~~~--~~~v~~~~~s-dg~~l~~~s~~~----~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 258 RLAVVARRE--GRSAVFID--GE---RVEAP--QGNHGRVVLW-RGKLVTSHTSLS----TPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp CEEEEEEET--TEEEEEET--TE---EECCC--SSEEEEEEEE-TTEEEEEEEETT----EEEEEEEETTCC-EEECC
T ss_pred cEEEEEEcC--CcEEEEEE--CC---eeccC--CCceEEEEec-CCEEEEEEcCCC----CCCeEEEEcCCC-ceEEE
Confidence 566665553 45667777 55 22222 2345688999 998887766653 556899999876 54444
No 70
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=3.1e-17 Score=174.42 Aligned_cols=269 Identities=15% Similarity=0.121 Sum_probs=182.8
Q ss_pred CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971 288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367 (721)
Q Consensus 288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~ 367 (721)
.++.+.+|... .+. ....+..+ ..+..++|+| ||++|++... .+..|++||+.+++.......
T Consensus 10 ~d~~v~v~d~~--~~~-------~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~----~d~~i~v~d~~~~~~~~~~~~-- 72 (391)
T 1l0q_A 10 ESDNISVIDVT--SNK-------VTATIPVG-SNPMGAVISP-DGTKVYVANA----HSNDVSIIDTATNNVIATVPA-- 72 (391)
T ss_dssp TTTEEEEEETT--TTE-------EEEEEECS-SSEEEEEECT-TSSEEEEEEG----GGTEEEEEETTTTEEEEEEEC--
T ss_pred CCCEEEEEECC--CCe-------EEEEeecC-CCcceEEECC-CCCEEEEECC----CCCeEEEEECCCCeEEEEEEC--
Confidence 36777777432 211 22233333 3467889999 9998876543 234699999999875443322
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVV 444 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~ 444 (721)
...+..++|+|||++|++..... ..++++++.++... ..........++|+|||++|++.. ++.|++|
T Consensus 73 -~~~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 73 -GSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp -SSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -CCCccceEECCCCCEEEEEECCC--------CEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 23677899999999998865433 34777777655221 111122234579999999987663 7889999
Q ss_pred ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971 445 NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG 522 (721)
Q Consensus 445 d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg 522 (721)
|+.+++..... ...+..+.|+|||++|+++.. .++.+.+|++.. . ..............++|+|||
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~~--~----~~~~~~~~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF------DSMSISVIDTVT--N----SVIDTVKVEAAPSGIAVNPEG 211 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT--T----EEEEEEECSSEEEEEEECTTS
T ss_pred ECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC--C----eEEEEEecCCCccceEECCCC
Confidence 99988765444 455678999999999987752 456677776543 2 323333334456778999999
Q ss_pred CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
++|++.+....+..|++||+.+++. +..+..+ .....++|+|||++|+++.... ..|++||+.+++.....
T Consensus 212 ~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 212 TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTITATM 282 (391)
T ss_dssp SEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCcCCCcEEEEECCCCeE--EEEEecC-CCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEEEEE
Confidence 9999988533477999999998874 4444433 3457899999999997776432 38999999998776554
Q ss_pred e
Q 004971 603 Q 603 (721)
Q Consensus 603 ~ 603 (721)
.
T Consensus 283 ~ 283 (391)
T 1l0q_A 283 A 283 (391)
T ss_dssp E
T ss_pred E
Confidence 3
No 71
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.82 E-value=3.5e-18 Score=178.58 Aligned_cols=287 Identities=11% Similarity=0.066 Sum_probs=196.0
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|||+++++ ...++.+.||.+...... ........+...+..++|+| ||++|+... .+..+.
T Consensus 21 ~l~~sp~g~~las--~~~D~~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s-----~D~~v~ 86 (345)
T 3fm0_A 21 FLAWNPAGTLLAS--CGGDRRIRIWGTEGDSWI------CKSVLSEGHQRTVRKVAWSP-CGNYLASAS-----FDATTC 86 (345)
T ss_dssp EEEECTTSSCEEE--EETTSCEEEEEEETTEEE------EEEEECSSCSSCEEEEEECT-TSSEEEEEE-----TTSCEE
T ss_pred EEEECCCCCEEEE--EcCCCeEEEEEcCCCcce------eeeeeccccCCcEEEEEECC-CCCEEEEEE-----CCCcEE
Confidence 3489999987664 334799999976433200 01111234566778899999 999998854 345599
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--ccee---cccCCCCce
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISL---FRFDGSFPS 425 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~---~~~~~~~~~ 425 (721)
+||+.++....+.....+...+..++|+|+|+.|+..+.++. +.++++..... .+.. .......++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~---------v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS---------VWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe---------EEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 999988765555556667788889999999999998776655 45555543321 1111 122234579
Q ss_pred eCcCCCEEEEEe-CCcEEEEECCCCceEE---Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 426 FSPKGDRIAFVE-FPGVYVVNSDGSNRRQ---VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 426 ~SpDG~~la~~~-~~~l~v~d~~~g~~~~---l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
|+|+|+.|+..+ ++.|.+|++..++... +. ...+..++|+|||++|+..+ .++.++||+....+...
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-------~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-------DDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEEEECTTCTT
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-------CCCeEEEeccccCCCCc
Confidence 999999998885 7889999998775432 22 45678999999999999887 57899999986543200
Q ss_pred c----------cceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc--c-----eEECcCCCcCce
Q 004971 500 V----------SAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY--G-----LHRLTEGPWSDT 561 (721)
Q Consensus 500 ~----------~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~--~-----~~~l~~~~~~~~ 561 (721)
. .....+.. +...+..++|+|++..|+..+. +..|.+|+.+.+... . ......+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 0 01122222 3456778999999999998887 678889987754310 0 111234556788
Q ss_pred eeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 562 MCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 562 ~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
.++|+|++. .|+.++.++ .|++|++.+++
T Consensus 308 ~v~~~p~~~~~laS~s~Dg-------~v~~W~~~~~~ 337 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDG-------EVAFWKYQRPE 337 (345)
T ss_dssp EEEECSSSTTEEEEEETTS-------CEEEEEECC--
T ss_pred EeEEeCCCceEEEEcCCCC-------cEEEEEecCCC
Confidence 999999985 788787775 89999998764
No 72
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=6e-18 Score=193.45 Aligned_cols=298 Identities=12% Similarity=0.089 Sum_probs=199.0
Q ss_pred cceeccCCeEEEEec-cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc---------Cceee--cCCCCE-EEE
Q 004971 271 WPCWVDESTLFFHRK-SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF---------TPATS--PGNNKF-IAV 337 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~-~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~s--p~dG~~-la~ 337 (721)
.++|++| .++|... ...++...||.. ..+ + ..++++.+...+. .+.|+ | ||++ |+|
T Consensus 28 ~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~-~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~ 96 (662)
T 3azo_A 28 CVGAVGD-EVWWVAPRPAEAGRATLVRR-RAD-G-------AEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVF 96 (662)
T ss_dssp EEEEETT-EEEEEEEETTTTTEEEEEEE-CTT-S-------CEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEE
T ss_pred eeEEcCC-eEEEEecCcccCCcEEEEEE-CCC-C-------CcceeCCCCccccccccccCCccceeeeec-CCCeEEEE
Confidence 4678877 5555433 244677889955 333 2 5677776654444 55565 9 9999 888
Q ss_pred EEecCCCCeeeEEEEECC--C-CceEEeecccC--CCCcccCcEEcCCCCEEEEEEeeCCCC-CCCCcceeEEEeccC--
Q 004971 338 ATRRPTSSYRHIELFDLV--K-NKFIELTRFVS--PKTHHLNPFISPDSSRVGYHKCRGGST-REDGNNQLLLENIKS-- 409 (721)
Q Consensus 338 ~~~~~g~~~~~l~l~dl~--t-g~~~~l~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~~~~~~l~~~~~~~-- 409 (721)
.... +..||++++. + ++.+.+..... +......++|||||++|++.+.+.... .......++++++.+
T Consensus 97 ~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 97 THFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 6533 3459999987 4 66666653211 234566899999999999988763110 001125688888876
Q ss_pred ----CCC-cce-ecccCCCCceeCcCCCEEEEEe-C--------CcEEEEECC-CC---ceEEEee---cCceeeEEcCC
Q 004971 410 ----PLP-DIS-LFRFDGSFPSFSPKGDRIAFVE-F--------PGVYVVNSD-GS---NRRQVYF---KNAFSTVWDPV 467 (721)
Q Consensus 410 ----~~~-~~~-~~~~~~~~~~~SpDG~~la~~~-~--------~~l~v~d~~-~g---~~~~l~~---~~~~~~~~spd 467 (721)
+.. .+. ........++|||||++|++.. . ..|+++|++ ++ +.+.+.. ..+..+.||||
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 321 222 1112234689999999999984 2 379999998 57 5566652 46678999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC---------cceEEccCCCEEEEEEeeCCceeEE
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN---------AFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
|+ +++.+. .++...||.++..++ ..+.++...... ..++|+||++.++ .... +..+||
T Consensus 253 g~-l~~~~~------~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~-~~~~-~~~~l~ 319 (662)
T 3azo_A 253 GS-LIVATD------RTGWWNLHRVDPATG----AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV-VHGK-GAAVLG 319 (662)
T ss_dssp SC-EEEEEC------TTSSCEEEEECTTTC----CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE-EEBS-SSCEEE
T ss_pred Ce-EEEEEC------CCCCeEEEEEECCCC----ceeecccccccccCccccccCceEeEeCCCEEEE-EEEc-CccEEE
Confidence 99 777663 345678999987654 666776654222 3567778887554 4445 778999
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
++|+++++ ++.++.+...+.. .|++|++.+++..... .....||++|+++++.++++.
T Consensus 320 ~~d~~~~~---~~~l~~~~~~~~~-~~s~~~~~~~~~~~~~---~~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 320 ILDPESGE---LVDAAGPWTEWAA-TLTVSGTRAVGVAASP---RTAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEETTTTE---EEECCSSCCEEEE-EEEEETTEEEEEEEET---TEEEEEEEEETTTCCEEEEES
T ss_pred EEECCCCc---EEEecCCCCeEEE-EEecCCCEEEEEEcCC---CCCCEEEEEECCCCceEEeec
Confidence 99998887 6777765443332 2388898888877654 345689999999998888764
No 73
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=1.8e-17 Score=173.35 Aligned_cols=270 Identities=11% Similarity=0.082 Sum_probs=184.2
Q ss_pred cccCceeecCCCCEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
....++++| ||+++++...... ..+..|++||+.+++....... ......++|+|||+++++.....
T Consensus 42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~------- 110 (353)
T 3vgz_A 42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVN------- 110 (353)
T ss_dssp SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTT-------
T ss_pred CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCC-------
Confidence 345789999 9999977653311 1256799999999875443322 33466789999999888765433
Q ss_pred cceeEEEeccCCCCcceecccC------------CCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEEe---ecCce
Q 004971 399 NNQLLLENIKSPLPDISLFRFD------------GSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQVY---FKNAF 460 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l~---~~~~~ 460 (721)
..++++++.++... ...... ...++|+|||+++++.. ...|++||+.+++..... ...+.
T Consensus 111 -~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST 188 (353)
T ss_dssp -TEEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred -CEEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence 35677776654221 111110 23469999999988874 567999999988765443 23467
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEeeCCcee
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTRTGYKN 536 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~ 536 (721)
.+.|+|||++|++.. .++.+.+ ++.... .....+.... .....++|+|||++|++.... ...
T Consensus 189 ~~~~s~dg~~l~~~~-------~~~~i~~--~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~ 254 (353)
T 3vgz_A 189 GLALDSEGKRLYTTN-------ADGELIT--IDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAE 254 (353)
T ss_dssp CCEEETTTTEEEEEC-------TTSEEEE--EETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSE
T ss_pred eEEECCCCCEEEEEc-------CCCeEEE--EECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCE
Confidence 899999999999875 2444544 455443 1223333311 233457999999999877642 468
Q ss_pred EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616 (721)
Q Consensus 537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S 616 (721)
|++||+.+++. +..+..+. ...++|+|||++|+++.... ..|++||+.+++...... .......++|+
T Consensus 255 v~~~d~~~~~~--~~~~~~~~--~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s 322 (353)
T 3vgz_A 255 VLVVDTRNGNI--LAKVAAPE--SLAVLFNPARNEAYVTHRQA------GKVSVIDAKSYKVVKTFD--TPTHPNSLALS 322 (353)
T ss_dssp EEEEETTTCCE--EEEEECSS--CCCEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEEE--CCSEEEEEEEC
T ss_pred EEEEECCCCcE--EEEEEcCC--CceEEECCCCCEEEEEECCC------CeEEEEECCCCeEEEEEe--cCCCCCeEEEc
Confidence 99999998885 33443322 25689999999988877542 389999999887766554 34466789999
Q ss_pred CCCCEEEEEEecC
Q 004971 617 PDGKSIVFTSDYG 629 (721)
Q Consensus 617 pDG~~l~~~~~~~ 629 (721)
|||++|+++....
T Consensus 323 ~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 323 ADGKTLYVSVKQK 335 (353)
T ss_dssp TTSCEEEEEEECC
T ss_pred CCCCEEEEEEccc
Confidence 9999988877653
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.82 E-value=1.5e-18 Score=182.95 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=203.1
Q ss_pred CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~ 397 (721)
+...+..++|+| ||++|++.. .+..|++||+.+++...+.....+...+..++|+|+++.|+....++.
T Consensus 7 ~~~~i~~~~~s~-~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~----- 75 (372)
T 1k8k_C 7 LVEPISCHAWNK-DRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN----- 75 (372)
T ss_dssp CSSCCCEEEECT-TSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC-----
T ss_pred cCCCeEEEEECC-CCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe-----
Confidence 444677899999 999988843 345699999998864444445566778889999999999998765544
Q ss_pred CcceeEEEeccCCCC--cc--eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce----EEEe---ecCceeeEEc
Q 004971 398 GNNQLLLENIKSPLP--DI--SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR----RQVY---FKNAFSTVWD 465 (721)
Q Consensus 398 ~~~~l~~~~~~~~~~--~~--~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~----~~l~---~~~~~~~~~s 465 (721)
+.++++..... .. .........+.|+|+|++|+... ++.|.+|++..+.. ..+. ...+..+.|+
T Consensus 76 ----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 76 ----AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp ----EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred ----EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 45555544311 11 11222344579999999999885 78899999987763 2222 4567899999
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-------------CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDV-------------DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
|+++.|+..+ .++.+.+|++..... ........+..+...+..++|+|||++|++.+.
T Consensus 152 ~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 222 (372)
T 1k8k_C 152 PNSVLLAAGS-------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 222 (372)
T ss_dssp TTSSEEEEEE-------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred CCCCEEEEEc-------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC--
Confidence 9999999886 578899998642110 001245556566667888999999999998886
Q ss_pred CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC--CceE-----------
Q 004971 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLR----------- 599 (721)
Q Consensus 533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~~~~----------- 599 (721)
+..|++||+.+++. +..+..+...+..++|+|||+.|+.+ .++ .|++|++.. ++..
T Consensus 223 -d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-------~i~i~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
T 1k8k_C 223 -DSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDC-------FPVLFTYDSAAGKLSFGGRLDVPKQS 291 (372)
T ss_dssp -TTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTS-------SCEEEEEETTTTEEEECCCCCCC---
T ss_pred -CCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCC-------eEEEEEccCcCceEEEeeccCccccc
Confidence 77899999988875 55666666667899999999977766 443 688888866 4211
Q ss_pred ---------------------------EeeecCCCCCcCCeEEC-CCC---CEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 600 ---------------------------KLIQSGSAGRANHPYFS-PDG---KSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 600 ---------------------------~l~~~~~~~~~~~~~~S-pDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
.....+|...+..++|. +|| ++|+..+.++ .|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg-----------------~i 354 (372)
T 1k8k_C 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG-----------------GM 354 (372)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS-----------------EE
T ss_pred hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC-----------------ce
Confidence 11111366677788755 777 8888777665 49
Q ss_pred EEEEcCCC
Q 004971 649 FKIKLDGS 656 (721)
Q Consensus 649 ~~~d~~~~ 656 (721)
.+|+++++
T Consensus 355 ~~W~~~~~ 362 (372)
T 1k8k_C 355 SIWDVRSL 362 (372)
T ss_dssp EEEEHHHH
T ss_pred EEEEecCh
Confidence 99998654
No 75
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=2.8e-18 Score=196.20 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=197.4
Q ss_pred CCCcccCceeecCCCCEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCccc---------CcEEc--CCCCE-E
Q 004971 318 PGLHAFTPATSPGNNKFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHL---------NPFIS--PDSSR-V 384 (721)
Q Consensus 318 ~~~~~~~~~~sp~dG~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~---------~~~~S--pdg~~-l 384 (721)
+...+..+++++ +.++|...+. ......||++ ..+++.+++... ...+. .+.|+ |||++ |
T Consensus 22 ~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 22 RSGRPACVGAVG---DEVWWVAPRPAEAGRATLVRR-RADGAEESALPA---PWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp TCSCCEEEEEET---TEEEEEEEETTTTTEEEEEEE-CTTSCEEESSCT---TCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred cCCccceeEEcC---CeEEEEecCcccCCcEEEEEE-CCCCCcceeCCC---CccccccccccCCccceeeeecCCCeEE
Confidence 344566788866 4677776532 1223445555 455665555432 22222 45565 99999 8
Q ss_pred EEEEeeCCCCCCCCcceeEEEecc----CCCCcceec-----ccCCCCceeCcCCCEEEEEeC-----------CcEEEE
Q 004971 385 GYHKCRGGSTREDGNNQLLLENIK----SPLPDISLF-----RFDGSFPSFSPKGDRIAFVEF-----------PGVYVV 444 (721)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~-----~~~~~~~~~SpDG~~la~~~~-----------~~l~v~ 444 (721)
+|.... . .+||+.++. +....++.. ......++|||||++|++... ..|++|
T Consensus 95 a~~~~~-~-------~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 95 VFTHFG-D-------QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEEBTT-T-------CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEEECC-C-------CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 886543 2 568988876 332333331 122345799999999999842 479999
Q ss_pred ECCC------CceEEEe-e--cCceeeEEcCCCCeEEEEecCC-CCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCC
Q 004971 445 NSDG------SNRRQVY-F--KNAFSTVWDPVREAVVYTSGGP-EFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNN 513 (721)
Q Consensus 445 d~~~------g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~ 513 (721)
++++ ++.+.+. . ..+..+.|||||++|++.+... ... .....||.++.++.......+.+... ...+
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~--~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP--WEGTELKTARVTEDGRFADTRTLLGGPEEAI 244 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT--TTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC--CCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence 9998 7777776 3 3456789999999999987421 110 12345555555421000144555543 4567
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC---------ceeeEEccCCCEEEEEEccCCCCCC
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS---------DTMCNWSPDGEWIAFASDRDNPGSG 584 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~---------~~~~~~SpDG~~l~~~~~~~~~~~~ 584 (721)
..++|||||+ |++.+++++..+||++|+++++ ...++.+... ...++|+|||+.++.... .
T Consensus 245 ~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----- 314 (662)
T 3azo_A 245 AQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----- 314 (662)
T ss_dssp EEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-----
T ss_pred cceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-----
Confidence 8899999999 8888877766799999998887 5666654322 245677788885555443 2
Q ss_pred ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
...||.+|+++++.++++. +...+..+ |++||+.+++....... ...||.+|+++++.++|+..
T Consensus 315 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~-------------~~~i~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 315 AAVLGILDPESGELVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRT-------------AYEVVELDTVTGRARTIGAR 378 (662)
T ss_dssp SCEEEEEETTTTEEEECCS--SCCEEEEE-EEEETTEEEEEEEETTE-------------EEEEEEEETTTCCEEEEESC
T ss_pred ccEEEEEECCCCcEEEecC--CCCeEEEE-EecCCCEEEEEEcCCCC-------------CCEEEEEECCCCceEEeecC
Confidence 2478989998888776653 33333322 37888888887765443 24699999999999999864
Q ss_pred C
Q 004971 665 S 665 (721)
Q Consensus 665 ~ 665 (721)
.
T Consensus 379 ~ 379 (662)
T 3azo_A 379 H 379 (662)
T ss_dssp C
T ss_pred C
Confidence 3
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-17 Score=174.81 Aligned_cols=281 Identities=11% Similarity=0.062 Sum_probs=198.2
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|||+++++ ...++.+.+|.+.... ....+..+...+..++|+| ++++|+... .+..|.
T Consensus 37 ~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~dg~i~ 99 (369)
T 3zwl_B 37 QVKYNKEGDLLFS--CSKDSSASVWYSLNGE---------RLGTLDGHTGTIWSIDVDC-FTKYCVTGS-----ADYSIK 99 (369)
T ss_dssp EEEECTTSCEEEE--EESSSCEEEEETTTCC---------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTTEEE
T ss_pred EEEEcCCCCEEEE--EeCCCEEEEEeCCCch---------hhhhhhhcCCcEEEEEEcC-CCCEEEEEe-----CCCeEE
Confidence 4589999987664 3337889999543222 4555666776788999999 999998754 345699
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--Ccceec-----------
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLF----------- 417 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~----------- 417 (721)
+||+.+++...... +...+..+.|+|+++.|+....+.... . ..+.++++.... ..+...
T Consensus 100 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~--~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKN--P--GSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTB--C--CEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCC--C--CEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999987544433 356678899999999999876651100 0 134445443321 111100
Q ss_pred cc--CCCCceeCcCCCEEEEEe-CCcEEEEECCC-CceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971 418 RF--DGSFPSFSPKGDRIAFVE-FPGVYVVNSDG-SNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490 (721)
Q Consensus 418 ~~--~~~~~~~SpDG~~la~~~-~~~l~v~d~~~-g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~ 490 (721)
.. ....++|+|+|+.|+... ++.|++||+.+ ++... +. ...+..+.|+|+++.|+..+ .++.+.+|
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~v~ 245 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-------RDTNSFLV 245 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSEEEEE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-------CCceEEEE
Confidence 00 234568999999998885 68899999987 44333 32 45788999999999999886 46788888
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-----------CceeEEEEECCCCcccceEECcCCCcC
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-----------GYKNLYIMDAEGGEGYGLHRLTEGPWS 559 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-----------g~~~l~~~d~~~g~~~~~~~l~~~~~~ 559 (721)
++.... ....+. .......++|+|+++++++..... +...+++||..+++. +..+..+...
T Consensus 246 d~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~ 317 (369)
T 3zwl_B 246 DVSTLQ-----VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--IGRVQGHFGP 317 (369)
T ss_dssp ETTTCC-----EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--EEEEECCSSC
T ss_pred ECCCCc-----eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--hhheecccCc
Confidence 765432 333343 445677899999999999987632 122799999998875 5666667777
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
+..++|+|||++|+.++.++ .|++|++..+.
T Consensus 318 v~~~~~s~~~~~l~s~~~dg-------~v~iw~~~~~~ 348 (369)
T 3zwl_B 318 LNTVAISPQGTSYASGGEDG-------FIRLHHFEKSY 348 (369)
T ss_dssp EEEEEECTTSSEEEEEETTS-------EEEEEEECHHH
T ss_pred EEEEEECCCCCEEEEEcCCC-------eEEEEECcccc
Confidence 88999999999999998875 89999987653
No 77
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.81 E-value=2.1e-18 Score=184.84 Aligned_cols=267 Identities=13% Similarity=0.079 Sum_probs=205.6
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVY 442 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~ 442 (721)
.+|...+..++|+|+++.|+..+.++. +.++++..+... +.........++|+|+|+.|+..+ ++.|.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~---------i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDAT---------IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSC---------EEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 345677888999999999988776665 566666554322 121223345579999999988885 78999
Q ss_pred EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971 443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS 519 (721)
Q Consensus 443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 519 (721)
+||+.+++..... ...+..+.|+|+|+.|+..+ .++.+.+|++.... ....+..+...+..+.|+
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s-------~D~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-------RDKTIKMWEVQTGY-----CVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCSSCEEEEEEC
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEeCCCccEEEEEEC
Confidence 9999887754433 45788999999999999886 57899999876533 556677777777889999
Q ss_pred cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC--------------------CCEEEEEEccC
Q 004971 520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD--------------------GEWIAFASDRD 579 (721)
Q Consensus 520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD--------------------G~~l~~~~~~~ 579 (721)
|||+.|+..+. +..|.+||+.+++. ...+..+...+..++|+|+ |.+|+.++.++
T Consensus 244 ~~g~~l~s~s~---D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 244 QDGTLIASCSN---DQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp TTSSEEEEEET---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred CCCCEEEEEcC---CCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99999998887 78899999998875 5556666677788999997 67888888775
Q ss_pred CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-e
Q 004971 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-L 658 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~ 658 (721)
.|++||+.+++...... ++...+..++|+|+|++|+..+.++ .|++||+.+++ .
T Consensus 319 -------~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~-----------------~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 319 -------TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDK-----------------TLRVWDYKNKRCM 373 (410)
T ss_dssp -------EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTT-----------------EEEEECCTTSCCC
T ss_pred -------eEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCC-----------------eEEEEECCCCceE
Confidence 89999999887655444 3777788999999999998777654 49999997765 5
Q ss_pred EEeccCCCCCCCceecCC--cCCcccc
Q 004971 659 KRLTQNSFEDGTPAWGPR--FIRPVDV 683 (721)
Q Consensus 659 ~~lt~~~~~~~~~~~sp~--~l~~~~~ 683 (721)
..+..|...+...+|+|+ .++.+..
T Consensus 374 ~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 374 KTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 677778878889999997 4555543
No 78
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=1.2e-17 Score=192.24 Aligned_cols=304 Identities=11% Similarity=-0.003 Sum_probs=205.6
Q ss_pred ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeE
Q 004971 328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL 403 (721)
Q Consensus 328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~ 403 (721)
+| ||++++|.....+.....|++.+..+++.+.+.... .+......++|||||++|+|.....+... ..|+
T Consensus 80 ~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~----~~i~ 154 (710)
T 2xdw_A 80 FK-KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDW----VTIK 154 (710)
T ss_dssp EE-ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSC----EEEE
T ss_pred EE-ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCce----EEEE
Confidence 48 999999988776655567899988777665553221 11224567899999999999888765211 3789
Q ss_pred EEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe-CC----------------cEEEEECCCCce--EEEee-----cC
Q 004971 404 LENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE-FP----------------GVYVVNSDGSNR--RQVYF-----KN 458 (721)
Q Consensus 404 ~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~-~~----------------~l~v~d~~~g~~--~~l~~-----~~ 458 (721)
+.++.++... ..........++|||||+.|+|.. .. .|+++++.++.. +.+.. ..
T Consensus 155 v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~ 234 (710)
T 2xdw_A 155 FMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234 (710)
T ss_dssp EEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE
Confidence 9998776321 122222345689999999999984 22 399999988763 34431 12
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC------CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD------VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
...+.|||||++|++.+... .+....||.++..+ + ....+.+..+.... ...|+|||++|++.++.+
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~----~~~~~~l~~~d~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREG----CDPVNRLWYCDLQQESNGITG--ILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRH 307 (710)
T ss_dssp EEEEEECTTSCEEEEEEECS----SSSCCEEEEEEGGGSSSSSCS--SCCCEEEECSSSSC-EEEEEEETTEEEEEECTT
T ss_pred EEEEEEcCCCCEEEEEEEcc----CCCccEEEEEECcccccccCC--ccceEEeeCCCCcE-EEEEeccCCEEEEEECCC
Confidence 45899999999999987421 11245666666653 1 01356666554333 346999999999998765
Q ss_pred C-ceeEEEEECCCCcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-EEeeecCCCC
Q 004971 533 G-YKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAG 608 (721)
Q Consensus 533 g-~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~ 608 (721)
+ ..+|+++|+++++....+.+..+.. .+..++|+++ .+|++..... +...|+++++.+|+. +.+.. +.+
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~----g~~~l~~~~~~~g~~~~~l~~--~~~ 380 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHD----VKNTLQLHDLATGALLKIFPL--EVG 380 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEET----TEEEEEEEETTTCCEEEEECC--CSS
T ss_pred CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEEC----CEEEEEEEECCCCCEEEecCC--CCc
Confidence 4 5689999998875322355554432 4567888855 4566666553 667899999966653 44432 345
Q ss_pred CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEecc
Q 004971 609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQ 663 (721)
Q Consensus 609 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~ 663 (721)
.+..+.++||++.|++....... ++.||.||+++++ .+.+..
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~-------------P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLS-------------PGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSC-------------CCEEEEEETTSSSCCCEEEEE
T ss_pred eEEEEecCCCCCEEEEEEeCCCC-------------CCEEEEEECCCCccceEEeee
Confidence 56678899999998887655433 3579999999888 666665
No 79
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.81 E-value=3e-18 Score=175.66 Aligned_cols=260 Identities=13% Similarity=0.051 Sum_probs=191.9
Q ss_pred CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYV 443 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v 443 (721)
.+...+..++|+|||+.|+....++. +.++++..+.. .+...........|+|++++|+..+ ++.|.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~---------v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGR---------VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSE---------EEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCc---------EEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34667888999999999998775554 55566654421 1111222234578999999998885 788999
Q ss_pred EECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971 444 VNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP 520 (721)
Q Consensus 444 ~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp 520 (721)
||+.+++... +. ...+..++|+|+++.|+..+ .++.++||++..... ....+..+...+..++|+|
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-------~D~~v~lWd~~~~~~----~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-------DDLTVKLWNWENNWA----LEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEEGGGTTE----EEEEECCCCSCEEEEEECT
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC-------CCCeEEEEECCCCcc----hhhhhcccCCcEEEEEECC
Confidence 9999887543 33 55788999999999999886 578999999865431 3445666777788899999
Q ss_pred -CCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc--CCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 521 -DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP--DGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 521 -Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
|++.|+..+. +..|.+||+.++.. ...+. .+...+..+.|+| |+++|+.++.++ .|.+||+.++
T Consensus 151 ~~~~~l~sgs~---D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------~i~iWd~~~~ 218 (304)
T 2ynn_A 151 KDPSTFASGCL---DRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------TIKIWDYQTK 218 (304)
T ss_dssp TCTTEEEEEET---TSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-------EEEEEETTTT
T ss_pred CCCCEEEEEeC---CCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-------eEEEEeCCCC
Confidence 6788888876 78999999987654 33333 2334456677876 788899888875 8999999988
Q ss_pred ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecC
Q 004971 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGP 675 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp 675 (721)
+...... ++...+..++|+|++++|+..+.++ .|.+||+.+++. +.+..+.......+|+|
T Consensus 219 ~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg-----------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 219 SCVATLE-GHMSNVSFAVFHPTLPIIISGSEDG-----------------TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEEEEE-CCSSCEEEEEECSSSSEEEEEETTS-----------------CEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred ccceeeC-CCCCCEEEEEECCCCCEEEEEcCCC-----------------eEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 7665544 3777888999999999988877765 399999988765 46665555566778777
Q ss_pred C
Q 004971 676 R 676 (721)
Q Consensus 676 ~ 676 (721)
.
T Consensus 281 ~ 281 (304)
T 2ynn_A 281 T 281 (304)
T ss_dssp T
T ss_pred C
Confidence 4
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.81 E-value=2.8e-18 Score=182.04 Aligned_cols=294 Identities=13% Similarity=0.121 Sum_probs=196.3
Q ss_pred EEeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEee
Q 004971 313 QRVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCR 390 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~ 390 (721)
..+..+...+..++|+| +| ++|+.... +..|.+||+.+++.........+...+..++|+| +++.|+....+
T Consensus 67 ~~~~~h~~~v~~~~~~~-~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHP-THPTTVAVGSK-----GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEECCCSSCEEEEEECS-SCTTEEEEEEB-----TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEECC-CCCCEEEEEcC-----CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34455666778899999 99 77777543 3459999999887655554345677888999999 56777765544
Q ss_pred CCCCCCCCcceeEEEeccCCCCcceecc------cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCcee
Q 004971 391 GGSTREDGNNQLLLENIKSPLPDISLFR------FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFS 461 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~ 461 (721)
+ .+.++++.+. .+.... .....++|+|+++.|+..+ ++.|++||+.+.....+. ...+..
T Consensus 141 ~---------~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 141 G---------ATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp T---------EEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred C---------EEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence 3 3566666543 111111 1234578999999998885 789999999655555554 567889
Q ss_pred eEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-CCCEEEEEEeeCCceeEEE
Q 004971 462 TVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYI 539 (721)
Q Consensus 462 ~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~ 539 (721)
++|+|+++ .|+..+ .++.+.||++..... .........+...+..++|+| ||++|+..+. +..|++
T Consensus 210 ~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~---d~~i~i 277 (383)
T 3ei3_B 210 AEFNPRCDWLMATSS-------VDATVKLWDLRNIKD--KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ---RNEIRV 277 (383)
T ss_dssp EEECSSCTTEEEEEE-------TTSEEEEEEGGGCCS--TTCEEEEEECSSCEEEEEECTTTSCEEEEEES---SSEEEE
T ss_pred EEECCCCCCEEEEEe-------CCCEEEEEeCCCCCc--ccceEEEecCCCceEEEEEcCCCCCEEEEEcC---CCcEEE
Confidence 99999999 566654 578899998876321 012222224566788899999 9999998887 789999
Q ss_pred EECCCCcccceEECcCCC------cCceeeEEccCCCEEEEEEccCC--CCCCceeEEEEecCCCceEEeeecC-CCCCc
Q 004971 540 MDAEGGEGYGLHRLTEGP------WSDTMCNWSPDGEWIAFASDRDN--PGSGSFEMYLIHPNGTGLRKLIQSG-SAGRA 610 (721)
Q Consensus 540 ~d~~~g~~~~~~~l~~~~------~~~~~~~~SpDG~~l~~~~~~~~--~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~ 610 (721)
||+.+++. +..+..+. .......|+|++..+++.....+ ..+....|++||+.+++........ +...+
T Consensus 278 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 278 YSSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp EETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred EECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 99998764 22222111 11123466776666655432100 0012348999999988765544321 23445
Q ss_pred CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
..++|+|||++|+..+ ++ .|.+||+++
T Consensus 356 ~~~~~s~~g~~l~s~s-d~-----------------~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GF-----------------NILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TT-----------------EEEEEECC-
T ss_pred EEEEEecCccEEEEec-CC-----------------cEEEEecCC
Confidence 6669999999998875 43 499999864
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.81 E-value=2.3e-17 Score=176.22 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=192.9
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN 406 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 406 (721)
+++ +++.++... .+..|++||+.+++...+... .+...+..++|+|+|+.|+....++. +.+++
T Consensus 99 ~~~-s~~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iwd 162 (401)
T 4aez_A 99 LDW-SNLNVVAVA-----LERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGL---------VDIYD 162 (401)
T ss_dssp EEE-CTTSEEEEE-----ETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSC---------EEEEE
T ss_pred Eee-cCCCEEEEE-----CCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCe---------EEEEE
Confidence 444 555566543 234599999999986555432 24667888999999999988765554 55666
Q ss_pred ccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC-ce-EEEe--ecCceeeEEcCCCCeEEEEecCCC
Q 004971 407 IKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS-NR-RQVY--FKNAFSTVWDPVREAVVYTSGGPE 479 (721)
Q Consensus 407 ~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g-~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~ 479 (721)
+..+...... .......+.| +++.|+..+ ++.|.+||+... .. ..+. .+.+..+.|+|+++.|+..+
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---- 236 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG---- 236 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE----
T ss_pred CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe----
Confidence 6544221111 1112233455 567777774 789999999843 32 2333 56788999999999999987
Q ss_pred CCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS 559 (721)
Q Consensus 480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~ 559 (721)
.++.+.+|++.... ....+..+...+..++|+|++..+++......+..|++||+.+++. +..+ .....
T Consensus 237 ---~d~~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~-~~~~~ 305 (401)
T 4aez_A 237 ---NDNVVQIWDARSSI-----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV-DAGSQ 305 (401)
T ss_dssp ---TTSCEEEEETTCSS-----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE-ECSSC
T ss_pred ---CCCeEEEccCCCCC-----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE-eCCCc
Confidence 56889999876532 4556666667888999999998887765433367899999998874 4444 34456
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee-ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~ 638 (721)
+..++|+|+|+.|+.+.... ...|++|++.+++...+. ...+...+..++|+|||++|+..+.++
T Consensus 306 v~~~~~s~~~~~l~~~~g~~-----dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg--------- 371 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFP-----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE--------- 371 (401)
T ss_dssp EEEEEECSSSSEEEEEECTT-----TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS---------
T ss_pred EEEEEECCCCCeEEEEeecC-----CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC---------
Confidence 78999999999999876321 128999999887655442 223677889999999999998876654
Q ss_pred CCCCCCCccEEEEEcCCCCe
Q 004971 639 PHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~~~ 658 (721)
.|.+|++.+++.
T Consensus 372 --------~i~iw~~~~~~~ 383 (401)
T 4aez_A 372 --------NLKFWRVYDGDH 383 (401)
T ss_dssp --------EEEEEECCC---
T ss_pred --------cEEEEECCCCcc
Confidence 499999988754
No 82
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.81 E-value=1.4e-17 Score=177.37 Aligned_cols=239 Identities=14% Similarity=0.098 Sum_probs=171.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+..++|+| ||++|+... .+..|++||+.+++... ....+...+..++|+|+++.|+..+.++.
T Consensus 125 ~v~~v~~s~-dg~~l~s~~-----~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-------- 188 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGA-----EDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSGDKLVSGSGDRT-------- 188 (393)
T ss_dssp BEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSE--------
T ss_pred eEEEEEECC-CCCEEEEEc-----CCCeEEEEECCCCcEEE--EEccCCCCEEEEEEcCCCCEEEEecCCCc--------
Confidence 466889999 999998754 34569999999887433 34556777889999999999987665444
Q ss_pred eeEEEeccCCCCccee-cccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceE-EEe---------ecCceeeEEcCC
Q 004971 401 QLLLENIKSPLPDISL-FRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRR-QVY---------FKNAFSTVWDPV 467 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~-~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~-~l~---------~~~~~~~~~spd 467 (721)
+.++++..+...... .......++|+| ||+.|+..+ ++.|.+||+.++... .+. ...+..++|+||
T Consensus 189 -v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 189 -VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp -EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred -EEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 566676554221111 112234568998 899888875 788999999887743 231 245778999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCC-------CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVD-------GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
|+.|+..+ .++.+.||++...... .......+..+...+..++|+|++++|+..+. +..|++|
T Consensus 268 g~~l~s~s-------~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~iw 337 (393)
T 1erj_A 268 GQSVVSGS-------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFW 337 (393)
T ss_dssp SSEEEEEE-------TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEE
T ss_pred CCEEEEEe-------CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC---CCeEEEE
Confidence 99999886 5789999988643210 00122344455566778999999999998887 7889999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEcc------CCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSP------DGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
|+.+++. +..+..+...+..++|+| +++.|+.++.++ .|.+|++..
T Consensus 338 d~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg-------~i~iW~~~~ 389 (393)
T 1erj_A 338 DKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC-------KARIWKYKK 389 (393)
T ss_dssp ETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS-------EEEEEEEEE
T ss_pred ECCCCeE--EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC-------cEEECcccc
Confidence 9998875 556666666677888875 788888888875 899998754
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.81 E-value=4.6e-18 Score=176.86 Aligned_cols=287 Identities=15% Similarity=0.100 Sum_probs=196.4
Q ss_pred eCCCCCcccCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 315 VTPPGLHAFTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
+.+|...+..++|+| + +++|+..+ .+..|.+||+.+++. ..+.....+...+..+.|+|||+.|+....+
T Consensus 34 L~GH~~~V~~v~~sp-~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 34 LKGHNGWVTQIATTP-QFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp ECCCSSCEEEEEECT-TCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCccCCEEEEEEeC-CCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 567777889999999 8 56776643 345699999987542 2333445567778899999999999887655
Q ss_pred CCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeE
Q 004971 391 GGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTV 463 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~ 463 (721)
+. +.+++.......... .........++++++.|+..+ ++.+.+||+......... ...+..+.
T Consensus 108 ~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 108 GT---------LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp SE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred cc---------ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 43 444444333111111 111122357889999888875 788999998776654443 34567788
Q ss_pred EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
|++++...++.+. ..++.+.+|++.... ....+..+...+..++|+|||++|+..+. +..|++||+.
T Consensus 179 ~~~~~~~~~~~s~-----~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~ 245 (340)
T 4aow_A 179 FSPNSSNPIIVSC-----GWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLN 245 (340)
T ss_dssp ECSCSSSCEEEEE-----ETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETT
T ss_pred EccCCCCcEEEEE-----cCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEec
Confidence 9988754333221 246788888765432 45556666677888999999999998887 7899999999
Q ss_pred CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--------cCCCCCcCCeEE
Q 004971 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--------SGSAGRANHPYF 615 (721)
Q Consensus 544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~~~ 615 (721)
+++. +..+. ....+..+.|+|++..++.+. +. .|++||+.++....... ..+...+..++|
T Consensus 246 ~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~-d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 246 EGKH--LYTLD-GGDIINALCFSPNRYWLCAAT-GP-------SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp TTEE--EEEEE-CSSCEEEEEECSSSSEEEEEE-TT-------EEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred cCce--eeeec-CCceEEeeecCCCCceeeccC-CC-------EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 8774 44443 334567899999987665554 43 89999998875443221 124556788999
Q ss_pred CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
+|||++|+..+.++ .|++||+++|.
T Consensus 315 s~dg~~l~sgs~Dg-----------------~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDN-----------------LVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTS-----------------CEEEEEEEC--
T ss_pred CCCCCEEEEEeCCC-----------------EEEEEeCCCcC
Confidence 99999998877665 39999988774
No 84
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.80 E-value=9.9e-18 Score=175.81 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=198.1
Q ss_pred ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcE
Q 004971 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGV 441 (721)
Q Consensus 365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l 441 (721)
+.+|...+..++|+||+++|+..+.++. +.+++...... .+.........++|+|+|+.|+..+ ++.+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~---------v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGK---------VIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCe---------EEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 3456777889999999999998776554 55555543321 1121222345579999999999885 7889
Q ss_pred EEEECCCCc-------eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971 442 YVVNSDGSN-------RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512 (721)
Q Consensus 442 ~v~d~~~g~-------~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 512 (721)
.+|++.... ...+. ...+..+.|+|+++.|+..+ .++.+.||++.... ....+..+...
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-------~D~~v~lwd~~~~~-----~~~~~~~h~~~ 198 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS-------GDGTCALWDVESGQ-----LLQSFHGHGAD 198 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCSSC
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCe-----EEEEEcCCCCC
Confidence 999886431 22332 45678899999999999886 57899999876532 55666666666
Q ss_pred CcceEEcc--CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 513 NAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 513 ~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
+..+.|+| +|+.|+..+. +..|++||+.+++. +..+..+...+..++|+|+|+.|+.++.+. .|.+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~---Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-------~v~l 266 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGC---DKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDA-------TCRL 266 (354)
T ss_dssp EEEEEECCCSSCCEEEEEET---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTS-------CEEE
T ss_pred eEEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCC-------eEEE
Confidence 77778877 5788988886 78999999998875 556666677788999999999999998875 8999
Q ss_pred EecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccCCCCC
Q 004971 591 IHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQNSFED 668 (721)
Q Consensus 591 ~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~~~~~ 668 (721)
||+..++...+... .....+..+.|+|||++|+..+.+. .|++||+..++ ...+..|...+
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-----------------TINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------------CEEEEETTTCSEEEEECCCSSCE
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-----------------cEEEEECCCCceEEEEECCCCcE
Confidence 99988765544432 1122456789999999998877655 39999987665 56777788888
Q ss_pred CCceecCC--cCCcccc
Q 004971 669 GTPAWGPR--FIRPVDV 683 (721)
Q Consensus 669 ~~~~~sp~--~l~~~~~ 683 (721)
...+|+|+ +|+..+.
T Consensus 330 ~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 330 STLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEEECTTSSCEEEEET
T ss_pred EEEEECCCCCEEEEEcC
Confidence 89999997 4555543
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.80 E-value=2.1e-17 Score=177.72 Aligned_cols=287 Identities=10% Similarity=0.048 Sum_probs=205.5
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
.++..-++||+ ++ .|+... +..|++||..+|+...+.....+...+..++|+|||++|+..+.++.
T Consensus 105 d~y~~~l~wS~-~n-~lAvgl------d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~------ 170 (420)
T 4gga_A 105 DYYLNLVDWSS-GN-VLAVAL------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE------ 170 (420)
T ss_dssp CTTCBCEEECT-TS-EEEEEE------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC------
T ss_pred cccceeEEECC-CC-EEEEEe------CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe------
Confidence 34556789998 75 666643 23599999999987776665666777889999999999998776555
Q ss_pred cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE--EEe--ecCceeeEEcCCCCeEEE
Q 004971 399 NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR--QVY--FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~--~l~--~~~~~~~~~spdg~~la~ 473 (721)
+.++++..+..............+++.+++.|+..+ +..+++|+....... .+. ...+....|+|+|+.++.
T Consensus 171 ---v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 171 ---VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp ---EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ---EEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeee
Confidence 556666554221111122233346677888888774 788999998765532 232 456778999999999998
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
.. .++.+.||....... ..........+...+...+|+|++..+++......+..|.+||+.+++. ...+
T Consensus 248 ~~-------~D~~v~i~~~~~~~~-~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~ 317 (420)
T 4gga_A 248 GG-------NDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAV 317 (420)
T ss_dssp EE-------TTSCEEEEESSCCSS-CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEE
T ss_pred ee-------ccccceEEeeccccc-cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--ceee
Confidence 86 578899998765432 0112344445556778899999988777665544577899999999884 3334
Q ss_pred cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971 554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633 (721)
Q Consensus 554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 633 (721)
.. ...+..+.|+|+++.|+.+.... ...|++||+.+++...... +|...+..++|||||++|+..+.++
T Consensus 318 ~~-~~~v~~~~~~~~~~~lv~~sg~~-----d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~---- 386 (420)
T 4gga_A 318 DA-HSQVCSILWSPHYKELISGHGFA-----QNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADE---- 386 (420)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEECTT-----TCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTT----
T ss_pred cc-ccceeeeeecCCCCeEEEEEecC-----CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCC----
Confidence 33 34567899999999999887431 2379999999987765544 4788899999999999999887765
Q ss_pred CCCCCCCCCCCCccEEEEEcCCC
Q 004971 634 EPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.|.+||+...
T Consensus 387 -------------tvriWdv~~~ 396 (420)
T 4gga_A 387 -------------TLRLWRCFEL 396 (420)
T ss_dssp -------------EEEEECCSCS
T ss_pred -------------eEEEEECCCC
Confidence 3889998654
No 86
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.7e-17 Score=172.25 Aligned_cols=288 Identities=12% Similarity=0.056 Sum_probs=190.3
Q ss_pred EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cC-CCCcccCcEEcCCCCEEEEEEee
Q 004971 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VS-PKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~-~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
..+..+...+..++|+| + .|+... .+..|++||+.++....+... .. |...+..++|+|+++.|+..+.+
T Consensus 8 ~~~~~h~~~v~~~~~s~-~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQ-G--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEECCSSCEEEEEEET-T--EEEEEE-----SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred eeeccCCCceeeeccCC-C--EEEEEc-----CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 34455666677888988 6 666543 445699999987643333222 22 66778889999999999987766
Q ss_pred CCCCCCCCcceeEEEeccCCC------Ccc---eecccCCCCceeCcCCCEEEEEe-CCcEEEEECC-CCc-eE---EEe
Q 004971 391 GGSTREDGNNQLLLENIKSPL------PDI---SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD-GSN-RR---QVY 455 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~------~~~---~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~-~g~-~~---~l~ 455 (721)
+. +.++++.... ..+ .........++|+|||++|+..+ ++.|.+||+. .+. .+ .+.
T Consensus 80 ~~---------v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 80 ST---------VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SC---------EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred Cc---------EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 65 3444442210 011 11122344579999999999885 7899999994 332 12 222
Q ss_pred --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC--CCEEEEEEee
Q 004971 456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTR 531 (721)
Q Consensus 456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~ 531 (721)
...+..+.|+|+++.|+..+ .++.++||+...... .....+..+...+..++|+|+ +..|+..+.
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s-------~D~~i~iW~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSS-------YDDTVRIWKDYDDDW---ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred cCCCceEEEEECCCCCEEEEEc-------CCCeEEEEECCCCCe---eEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 45678999999999999887 578999998865321 144566667778888999999 678887776
Q ss_pred CCceeEEEEECCCCcc------cceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee--
Q 004971 532 TGYKNLYIMDAEGGEG------YGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-- 602 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~------~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-- 602 (721)
+..|.+||+.++.. .....+.. +...+..++|++++ .|+.++.++ .|++|+..+++.+.+.
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-------~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-------VLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-------CEEEEEEETTEEEEEEEE
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-------EEEEEEcCCCceEEEecc
Confidence 67899998865421 11233333 55667889999776 677777664 7999998877533222
Q ss_pred ecCCCC-CcCCeEECC--CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 603 QSGSAG-RANHPYFSP--DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 603 ~~~~~~-~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
...+.. .+..++|+| ||++|+..+.++ .|.+|+++.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----------------~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDG-----------------IVNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTS-----------------EEEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCC-----------------cEEEEEecc
Confidence 122444 677899999 788888777665 388898754
No 87
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.80 E-value=1.5e-17 Score=173.65 Aligned_cols=277 Identities=14% Similarity=0.078 Sum_probs=185.5
Q ss_pred cc-CCeEEEEeccCCCCcEEEEEEecCCCcceecccc-ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 275 VD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESV-SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 275 s~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
++ |++++++ ...++.+.+|++...... ...+ ....+..+...+..++|+| ++.+++..+ .+..|++|
T Consensus 35 ~~~d~~~l~s--gs~D~~v~iWd~~~~~~~---~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s-----~D~~v~lw 103 (343)
T 2xzm_R 35 ENEDSPVLIS--GSRDKTVMIWKLYEEEQN---GYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS-----WDKTLRLW 103 (343)
T ss_dssp TTCCCCEEEE--EETTSCEEEEEECSSCCS---SBSEEEEEEECCCSSCEEEEEECS-STTEEEEEE-----TTSEEEEE
T ss_pred cCCCCCEEEE--EcCCCEEEEEECCcCCcc---cccccccchhccCCCceEEEEECC-CCCEEEEEc-----CCCcEEEE
Confidence 55 7887774 334799999976543210 0000 2334566666788899999 999888754 45569999
Q ss_pred ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-e---ecccCCCCceeCc
Q 004971 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-S---LFRFDGSFPSFSP 428 (721)
Q Consensus 353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~~~~~~~~Sp 428 (721)
|+.+++. +..+..+...+..++|+|||+.|+....++. +.++++....... . ........++|+|
T Consensus 104 d~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~---------i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 104 DLRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAERE---------IKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp ETTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTSC---------EEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred ECCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCCE---------EEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 9999874 3334556778889999999999988766554 4555554221000 0 0111123457787
Q ss_pred CC----------CEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 429 KG----------DRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 429 DG----------~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
++ ..++..+ ++.|.+||........+. ...+..++|+|||++|+..+ .++.+.||++...
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-------~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-------KDKKLLIWDILNL 245 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTCEEEEEESSCC
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc-------CCCeEEEEECCCC
Confidence 76 6777764 789999996543333333 45688999999999999887 5789999987432
Q ss_pred CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-----------CCCcCceeeE
Q 004971 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-----------EGPWSDTMCN 564 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-----------~~~~~~~~~~ 564 (721)
.. ....+. ....+..++|+|++++|+... +..|++|++.+++...+..+. .+...+..++
T Consensus 246 ~~----~~~~~~-~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 316 (343)
T 2xzm_R 246 TY----PQREFD-AGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA 316 (343)
T ss_dssp SS----CSEEEE-CSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE
T ss_pred cc----cceeec-CCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEE
Confidence 21 223332 234577899999999887554 457999999877642222332 2334467899
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
|+|||++|+.++.++ .|++|++.++
T Consensus 317 ~sp~g~~l~sg~~Dg-------~v~~w~~~~g 341 (343)
T 2xzm_R 317 WNALGKKLFAGFTDG-------VIRTFSFETS 341 (343)
T ss_dssp ECSSSCCEEEEETTS-------EEEEEEEEEE
T ss_pred ECCCCCeEEEecCCc-------eEEEEEEEcc
Confidence 999999999998875 8999997654
No 88
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=3.5e-17 Score=170.32 Aligned_cols=295 Identities=11% Similarity=0.060 Sum_probs=179.4
Q ss_pred CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC--CCceEEeeccc
Q 004971 289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTRFV 366 (721)
Q Consensus 289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~--tg~~~~l~~~~ 366 (721)
++.+.+|.+...+.. ...........+..++|+| ||++|++..... ..|.+|++. +++...+....
T Consensus 14 ~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 14 SQQIHVWNLNHEGAL-------TLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp GTEEEEEEECTTSCE-------EEEEEEECSSCCCCEEECT-TSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEE
T ss_pred CCeEEEEEECCCCcE-------EEeeeEecCCCCceEEECC-CCCEEEEeecCC----CeEEEEEecCCCCceeeccccc
Confidence 677888866432211 1222223344567899999 999988865431 458888887 66655554433
Q ss_pred CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--Ccce--ecccCCCCceeCcCCCEEEEEe--CCc
Q 004971 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDIS--LFRFDGSFPSFSPKGDRIAFVE--FPG 440 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~SpDG~~la~~~--~~~ 440 (721)
... ....++|+|||++|++...... .+.++++..+. ..+. ........++|+|||++|++.. ++.
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAG--------NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTT--------EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCC--------eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCE
Confidence 222 5667899999999888654332 35555552111 0111 1112345679999999988774 688
Q ss_pred EEEEECCC-CceEE-----Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-
Q 004971 441 VYVVNSDG-SNRRQ-----VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG- 510 (721)
Q Consensus 441 l~v~d~~~-g~~~~-----l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~- 510 (721)
|++|++.+ ++... +. ...+..+.|+|||++|+++.. .++.+.+|+++...+ .......+....
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g-~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHG-NIECVQTLDMMPE 225 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTS-CCEEEEEEECSCT
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCC-cEEEEeeccccCc
Confidence 99999987 65432 22 224567899999999988762 457788888764332 000112222111
Q ss_pred -----CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971 511 -----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583 (721)
Q Consensus 511 -----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 583 (721)
.....++|+|||++|++.... +..|++|++. +++.+.+..+..+.. ...++|+|||++|+++....
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~---- 298 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKS---- 298 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTT----
T ss_pred cccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCC----
Confidence 123358999999999876632 5678888887 454333334433333 67899999999998887542
Q ss_pred CceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971 584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 584 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD 618 (721)
+...||.+|..+++.+.+...........++|.|+
T Consensus 299 ~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 299 HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred CeEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 33344444777776665543222233444555544
No 89
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=9.7e-17 Score=167.70 Aligned_cols=275 Identities=9% Similarity=0.040 Sum_probs=169.8
Q ss_pred eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-ccee---cccCCC
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISL---FRFDGS 422 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~ 422 (721)
..++.+|.++++...+.... .......++|||||+ |++....+.. ..++++++.++.. .+.. ......
T Consensus 18 i~v~~~d~~tg~~~~~~~~~-~~~~p~~~a~spdg~-l~~~~~~~~~------~~v~~~~~~~g~~~~~~~~~~~~~~p~ 89 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLA-ATQNPTYLALSAKDC-LYSVDKEDDE------GGIAAWQIDGQTAHKLNTVVAPGTPPA 89 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEE-ECSCCCCEEECTTCE-EEEEEEETTE------EEEEEEEEETTEEEEEEEEEEESCCCS
T ss_pred EEEEEEcCCCCeEEEeeeee-ccCCcceEEEccCCe-EEEEEecCCC------ceEEEEEecCCcEEEeeeeecCCCCCE
Confidence 34566677778765543221 234566799999999 7776653211 4577777754421 2221 223345
Q ss_pred CceeCcCCCEEEEEe--CCcEEEEECC-CCceEEEe----ec----------CceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971 423 FPSFSPKGDRIAFVE--FPGVYVVNSD-GSNRRQVY----FK----------NAFSTVWDPVREAVVYTSGGPEFASESS 485 (721)
Q Consensus 423 ~~~~SpDG~~la~~~--~~~l~v~d~~-~g~~~~l~----~~----------~~~~~~~spdg~~la~~~~~~~~~~~~~ 485 (721)
.++|+|||++|++.. .+.+.+|+++ ++....+. .+ .+..++|+|||+ ++++.. .++
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~------~~~ 162 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL------GSD 162 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET------TTT
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC------CCC
Confidence 679999999998885 5679999985 45544443 11 145689999999 666542 456
Q ss_pred cEEEEEEEccCCCCccceEEc---ccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCC--
Q 004971 486 EVDIISINVDDVDGVSAVRRL---TTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGP-- 557 (721)
Q Consensus 486 ~~~i~~~~~~~~~~~~~~~~l---~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~-- 557 (721)
.+.+|+++..+ ....+ .... .....++|+|||++|++..... ..|++|+++ +++...+..+....
T Consensus 163 ~v~~~~~~~~g-----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~--~~v~v~~~~~~~g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 163 KVYVYNVSDAG-----QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS--SQIASLKYDTQTGAFTQLGIVKTIPAD 235 (347)
T ss_dssp EEEEEEECTTS-----CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred EEEEEEECCCC-----cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCceEEeeeeeecCCC
Confidence 78888887433 22221 2211 2455689999999998877643 345555544 46532222222211
Q ss_pred ----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971 558 ----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGI 631 (721)
Q Consensus 558 ----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~ 631 (721)
.....++|||||++|+++.... ..|.+|+++ +++.+.+... .+......++|||||++|+++....+.
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGY------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETT------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCC------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence 2246799999999998776532 278888886 3333333221 123456789999999999887766442
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
- .+|.+|.++++++++..
T Consensus 310 v--------------~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 310 A--------------TLYARDLTSGKLSLLQK 327 (347)
T ss_dssp E--------------EEEEECTTTCCEEEEEE
T ss_pred E--------------EEEEEeCCCCeEEeccc
Confidence 1 24555778888887764
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.79 E-value=4.9e-18 Score=180.98 Aligned_cols=288 Identities=11% Similarity=0.038 Sum_probs=199.8
Q ss_pred EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc----eEEeecccCCCCcccCcEEcCC----C---C
Q 004971 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK----FIELTRFVSPKTHHLNPFISPD----S---S 382 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~----~~~l~~~~~~~~~~~~~~~Spd----g---~ 382 (721)
.+..+...+..++|+| ++|+... .+..|++||+.+++ ...+.....+...+..++|+|+ | +
T Consensus 11 ~~~~h~~~i~~~~~~~---~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN---SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhcCeEEEEecC---CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 3445666778888976 6777643 34569999999876 1112222345677888999999 8 8
Q ss_pred EEEEEEeeCCCCCCCCcceeEEEeccCCCC-------cceec-----ccCCCCceeC----cCCCE-EEEEe-CCcEEEE
Q 004971 383 RVGYHKCRGGSTREDGNNQLLLENIKSPLP-------DISLF-----RFDGSFPSFS----PKGDR-IAFVE-FPGVYVV 444 (721)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~-----~~~~~~~~~S----pDG~~-la~~~-~~~l~v~ 444 (721)
.|+....++. +.++++..... .+... ......++|+ |+++. |+..+ ++.|++|
T Consensus 83 ~l~s~~~dg~---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 83 LVATTSFSGD---------LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EEEEEETTSC---------EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred EEEEEcCCCC---------EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 8888765554 45555543321 11111 1334457999 99999 87774 7889999
Q ss_pred ECCC------Cc-eE-----EEe---------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 445 NSDG------SN-RR-----QVY---------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 445 d~~~------g~-~~-----~l~---------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
|+.. ++ .. .+. ...+..+.|+|++ .|+..+ .++.+.+|++.... ..
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~dg~i~i~d~~~~~-----~~ 220 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-------NNGTVQISELSTLR-----PL 220 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-------TTSEEEEEETTTTE-----EE
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-------CCCcEEEEECCCCc-----ee
Confidence 9987 43 22 331 4567899999999 777664 56788888875422 44
Q ss_pred EEccc---C---CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-------------CCcCceeeE
Q 004971 504 RRLTT---N---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-------------GPWSDTMCN 564 (721)
Q Consensus 504 ~~l~~---~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-------------~~~~~~~~~ 564 (721)
..+.. + ...+..++|+||+++|++.+...+...|++||+.+++. +..+.. +...+..++
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEE
Confidence 55555 5 66788899999999999988722228999999998875 555554 566678999
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-----CC---------------CCCcCCeEECCCC-----
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-----GS---------------AGRANHPYFSPDG----- 619 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~---------------~~~~~~~~~SpDG----- 619 (721)
|+|||++|+.++.++ .|++||+.+++....... .+ ...+..++|+|||
T Consensus 299 ~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 299 FNDSGETLCSAGWDG-------KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp ECSSSSEEEEEETTS-------EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred ECCCCCEEEEEeCCC-------eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 999999999988775 899999998876655541 24 6678899999999
Q ss_pred -----CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 620 -----KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 620 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
++|+..+.++ .|.+|++++|+
T Consensus 372 ~~~~~~~l~s~~~dg-----------------~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDR-----------------SIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTT-----------------EEEEEEEEC--
T ss_pred cccccceEEEecCCC-----------------cEEEEEcCCCC
Confidence 6777666554 49999987763
No 91
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=3.5e-17 Score=171.10 Aligned_cols=254 Identities=13% Similarity=0.132 Sum_probs=163.2
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.....++||| ||+ |++.... ..+..|++||+.+++.+.+.....+......++|+|||++|++.....+
T Consensus 40 ~~p~~~a~sp-dg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~------- 108 (347)
T 3hfq_A 40 QNPTYLALSA-KDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG------- 108 (347)
T ss_dssp SCCCCEEECT-TCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTT-------
T ss_pred CCcceEEEcc-CCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC-------
Confidence 3456789999 998 6665432 2356799999988876665543333455667899999999988764332
Q ss_pred ceeEEEeccC-C-CCcceecccC------------CCCceeCcCCCEEEEEe--CCcEEEEECC-CCceEEEe------e
Q 004971 400 NQLLLENIKS-P-LPDISLFRFD------------GSFPSFSPKGDRIAFVE--FPGVYVVNSD-GSNRRQVY------F 456 (721)
Q Consensus 400 ~~l~~~~~~~-~-~~~~~~~~~~------------~~~~~~SpDG~~la~~~--~~~l~v~d~~-~g~~~~l~------~ 456 (721)
.+.++++.. + ...+...... ...++|+|||+ +++.. .+.|++|+++ +++...+. .
T Consensus 109 -~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 109 -TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp -EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred -EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 344444431 1 1111111111 22379999999 65553 5679999998 56554332 1
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE---EcccCC------CCCcceEEccCCCEEEE
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR---RLTTNG------KNNAFPSVSPDGKWIVF 527 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~l~~~~------~~~~~~~~SpDg~~l~~ 527 (721)
..+..++|+|||++|+++.. .++.+.+|+++...+ ... .+.... .....++|+|||++|++
T Consensus 187 ~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGE------LSSQIASLKYDTQTG----AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp CCEEEEEECTTSSEEEEEET------TTTEEEEEEEETTTT----EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred CCCceEEECCCCCEEEEEeC------CCCEEEEEEecCCCC----ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 24567899999999998763 467889999886432 322 222211 12455899999999987
Q ss_pred EEeeCCceeEEEEECC-CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 528 RSTRTGYKNLYIMDAE-GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
.... ...|.+|+++ +++...+..+..+......++|||||++|+++.... +...||.+|..+|+.+.+.
T Consensus 257 ~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 257 SNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT----DNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEE
T ss_pred EeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC----CcEEEEEEeCCCCeEEecc
Confidence 7653 4578888876 333222444444333457899999999999888653 3344555577788877654
No 92
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.79 E-value=4.3e-17 Score=172.76 Aligned_cols=301 Identities=13% Similarity=0.060 Sum_probs=194.8
Q ss_pred eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEecc
Q 004971 210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKS 286 (721)
Q Consensus 210 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~ 286 (721)
.|..|.......+|||||++|+.++.+ ..|.+|+..+++.......... ..+|+|||+.+++ .
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D------------~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las--~ 126 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQD------------GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC--G 126 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETT------------SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE--C
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE--e
Confidence 355566666666999999999997754 4689999988876554432222 4589999987773 4
Q ss_pred CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971 287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKNKFIELTRF 365 (721)
Q Consensus 287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~ 365 (721)
..++.+.+|.+...... .........+..+...+..+.|+| ++. .|+.. +.+..|.+||+.+++.......
T Consensus 127 ~~d~~v~iw~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~s~-----s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADR--DGNMPVSRVLTGHKGYASSCQYVP-DQETRLITG-----SGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp CSSSCCEEEECCCCSSC--CCSSTTCCBCCCCSSCCCCCBCCS-SSSSCEEEE-----CTTSCEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCccc--cCCccceeeccCCCcceEEEEEec-CCCCEEEEE-----CCCCcEEEEEcCCCcEEEEeec
Confidence 44788999966432110 000012233455665677888999 754 45542 3456699999999875433211
Q ss_pred ---cCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---cccCCCCceeCcCCCEEEEEe-
Q 004971 366 ---VSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVE- 437 (721)
Q Consensus 366 ---~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~SpDG~~la~~~- 437 (721)
..+...+..+.|++ ++..|+..+.++. +.++++......+.. .......++|+|||++|+..+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~---------v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTT---------VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSC---------EEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCe---------EEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 23455566778876 7777777665554 566666532222211 223345578888888877774
Q ss_pred CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971 438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (721)
++.|.+||+.+++........ ..........+..++
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNRE--------------------------------------------PDRNDNELPIVTSVA 305 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCC--------------------------------------------CSSSCCSSCSCSEEE
T ss_pred CCeEEEEECCCCcEEEEeccc--------------------------------------------ccccccccCceEEEE
Confidence 677888888766543322000 000000112356789
Q ss_pred EccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
|+|+|++|+..+. +..|++||..+++. +..+ ..+...+..++|||||+.|+.++.++ .|.+|++
T Consensus 306 ~s~~g~~l~~g~~---dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-------~i~iW~~ 373 (380)
T 3iz6_a 306 FSISGRLLFAGYS---NGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-------NLKIWAF 373 (380)
T ss_dssp ECSSSSEEEEECT---TSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-------CEEEEEC
T ss_pred ECCCCCEEEEEEC---CCCEEEEECCCCce--EEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-------CEEEEec
Confidence 9999999998776 77899999988774 3333 34556678999999999999988875 8999998
Q ss_pred CCCc
Q 004971 594 NGTG 597 (721)
Q Consensus 594 ~~~~ 597 (721)
.+.+
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 7653
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.79 E-value=1.1e-17 Score=181.28 Aligned_cols=274 Identities=9% Similarity=0.063 Sum_probs=183.2
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce---------EEeecccCCC------------CcccCcEEc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---------IELTRFVSPK------------THHLNPFIS 378 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~---------~~l~~~~~~~------------~~~~~~~~S 378 (721)
..+..++|+| +|++|+... .++.|.+||+.+++. ..+.....+. ..+..++|+
T Consensus 29 ~~V~~v~~s~-~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 29 DIISTVEFNH-SGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GSEEEEEECS-SSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred CcEEEEEECC-CCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 3567889999 999998854 345699999987651 1233334455 567889999
Q ss_pred CCC--CEEEEEEeeCCCCCCCCcceeEEEeccCCCC-----------------------------------------c-c
Q 004971 379 PDS--SRVGYHKCRGGSTREDGNNQLLLENIKSPLP-----------------------------------------D-I 414 (721)
Q Consensus 379 pdg--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------------~-~ 414 (721)
|++ ..|+....++. ..+| ++..... . .
T Consensus 103 ~~~~~~~l~s~s~d~~-------i~iw--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKT-------IKLW--KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCSSSEEEEEECSSC-------EEEE--EEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CCCCcceEEEeCCCCe-------EEEE--ecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 998 78887766555 3333 3321100 0 0
Q ss_pred eecccCCCCceeCcCCCEEEEEeCCcEEEEECCC-CceEEE--------e--ecCceeeEEcCCC-CeEEEEecCCCCCC
Q 004971 415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQV--------Y--FKNAFSTVWDPVR-EAVVYTSGGPEFAS 482 (721)
Q Consensus 415 ~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~l--------~--~~~~~~~~~spdg-~~la~~~~~~~~~~ 482 (721)
.........++|+|||+.|+...++.|.+||+.. +....+ . ...+..++|+|++ +.|+..+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~------- 246 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS------- 246 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-------
T ss_pred cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-------
Confidence 1122234557999999999988888999999983 333321 1 3457899999999 8888776
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCC------------CCcceEEccCCCEEEEEEeeCCceeEEEEECCC-Ccccc
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGK------------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYG 549 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~ 549 (721)
.++.+.||++..... .......+..+.. .+..++|+|||++|+..+. ..|++||+.+ ++.
T Consensus 247 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~~~~-- 319 (447)
T 3dw8_B 247 SKGTIRLCDMRASAL-CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNMENRP-- 319 (447)
T ss_dssp TTSCEEEEETTTCSS-SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCCSSC--
T ss_pred CCCeEEEEECcCCcc-ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCCccc--
Confidence 578899998765331 0001355555443 6778999999999997763 6899999986 553
Q ss_pred eEECcCCCcC---------------ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec----------
Q 004971 550 LHRLTEGPWS---------------DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS---------- 604 (721)
Q Consensus 550 ~~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~---------- 604 (721)
+..+..+... ...++|+|||++|+.++.++ .|++||+.+++...+...
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN-------FFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT-------EEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC-------EEEEEEcCCCcceeeeeccccccccccc
Confidence 3333333211 12389999999998888775 899999999876654321
Q ss_pred ---------------------CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 605 ---------------------GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 605 ---------------------~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.....+..++|+|+|..|++.+.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 0123456699999999998876543
No 94
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.79 E-value=2.8e-17 Score=168.99 Aligned_cols=274 Identities=13% Similarity=0.109 Sum_probs=191.7
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..+|+|||+++++ ...++.+.+|...... ....+..+...+..++|+| +|++|+... .+..|.
T Consensus 28 ~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~d~~i~ 90 (312)
T 4ery_A 28 SVKFSPNGEWLAS--SSADKLIKIWGAYDGK---------FEKTISGHKLGISDVAWSS-DSNLLVSAS-----DDKTLK 90 (312)
T ss_dssp EEEECTTSSEEEE--EETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTSEEE
T ss_pred EEEECCCCCEEEE--eeCCCeEEEEeCCCcc---------cchhhccCCCceEEEEEcC-CCCEEEEEC-----CCCEEE
Confidence 3479999987664 3347889999543221 3445566666788899999 999988754 345699
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP 428 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp 428 (721)
+||+.+++.. .....+...+..+.|+|+++.|+....++. +.++++..+... +.........+.|+|
T Consensus 91 vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 91 IWDVSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDES---------VRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp EEETTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSC---------EEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEECCCCcEE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCc---------EEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 9999988743 333455677888999999999988765554 566666554211 111122234578999
Q ss_pred CCCEEEEEe-CCcEEEEECCCCceEE-Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 429 KGDRIAFVE-FPGVYVVNSDGSNRRQ-VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 429 DG~~la~~~-~~~l~v~d~~~g~~~~-l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
+|+.|+..+ ++.|.+||+.+++... +. ...+..+.|+|++++|+..+ .++.+.+|++.... ..
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~ 227 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-------LDNTLKLWDYSKGK-----CL 227 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTTE-----EE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-------CCCeEEEEECCCCc-----EE
Confidence 999988875 7889999998877533 32 33567799999999999886 56888898875422 34
Q ss_pred EEcccCCCC--CcceEEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 504 RRLTTNGKN--NAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 504 ~~l~~~~~~--~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
..+..+... .....++ +++++|+..+. +..|++||+.+++. +..+..+...+..++|+|+++.|+.++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~- 301 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALEN- 301 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCT---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECSSSSEEEEEECTT-
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECC---CCEEEEEECCCchh--hhhhhccCCcEEEEeecCcCCceEEEEccC-
Confidence 445444322 2223444 67888877765 77899999998875 666766777788999999999999887421
Q ss_pred CCCCceeEEEEecC
Q 004971 581 PGSGSFEMYLIHPN 594 (721)
Q Consensus 581 ~~~~~~~i~~~d~~ 594 (721)
...|.+|+.+
T Consensus 302 ----d~~i~~W~~d 311 (312)
T 4ery_A 302 ----DKTIKLWKSD 311 (312)
T ss_dssp ----TCCEEEEECC
T ss_pred ----CccEEEecCC
Confidence 1268888754
No 95
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.79 E-value=2e-17 Score=170.76 Aligned_cols=276 Identities=12% Similarity=0.089 Sum_probs=188.1
Q ss_pred ceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 272 PCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 272 ~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
.+|++++ +++++ ...++.+.+|.+....... -.....+..+...+..++|+| ||++|+... .+..|+
T Consensus 23 l~~~~~~~~~l~s--~s~D~~v~~W~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s-----~D~~v~ 90 (319)
T 3frx_A 23 LATSAGQPNLLLS--ASRDKTLISWKLTGDDQKF----GVPVRSFKGHSHIVQDCTLTA-DGAYALSAS-----WDKTLR 90 (319)
T ss_dssp EEECSSCTTEEEE--EETTSEEEEEEEEEETTEE----EEEEEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEEE
T ss_pred EEccCCCccEEEE--ecCCccEEEecCCCCCccc----cccceEEeCCcccEEEEEECC-CCCEEEEEe-----CCCEEE
Confidence 4788864 56664 3347999999765432110 002334556666778899999 999988754 456699
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcC
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPK 429 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpD 429 (721)
+||+.+++. +..+..+...+..++|+|+++.|+..+.++. +.++++.+... .+.........+.|+|+
T Consensus 91 ~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~---------i~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 91 LWDVATGET--YQRFVGHKSDVMSVDIDKKASMIISGSRDKT---------IKVWTIKGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EEETTTTEE--EEEEECCSSCEEEEEECTTSCEEEEEETTSC---------EEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred EEECCCCCe--eEEEccCCCcEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence 999999874 3344566778889999999999988776665 44555543210 01111111233567764
Q ss_pred ------CCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 430 ------GDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 430 ------G~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
+..|+..+ ++.|.+||+..++..... ...+..++|+|||+.|+..+ .++.++||++....
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-------~dg~i~iwd~~~~~--- 229 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-------KDGEIMLWNLAAKK--- 229 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-------TTCEEEEEETTTTE---
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCc---
Confidence 44666664 789999999887654333 45788999999999999886 57889999875432
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--------CCcCceeeEEccCCCE
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--------GPWSDTMCNWSPDGEW 571 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--------~~~~~~~~~~SpDG~~ 571 (721)
....+... ..+..++|+|||++|+.... ..+.+|+++.+.. +..+.. +...+..++|||||++
T Consensus 230 --~~~~~~~~-~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 230 --AMYTLSAQ-DEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp --EEEEEECC-SCEEEEEECSSSSEEEEEET----TEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred --EEEEecCC-CcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECCCCCE
Confidence 34444433 46788999999999988763 4588888876543 222221 1223567999999999
Q ss_pred EEEEEccCCCCCCceeEEEEecCCC
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
|+.++.++ .|++||+.++
T Consensus 301 l~sg~~Dg-------~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDN-------VIRVWQVMTA 318 (319)
T ss_dssp EEEEETTS-------CEEEEEEEEC
T ss_pred EEEeecCc-------eEEEEEEeec
Confidence 99998875 8999998653
No 96
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=7.9e-17 Score=185.44 Aligned_cols=305 Identities=10% Similarity=0.036 Sum_probs=200.5
Q ss_pred ccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCCCe
Q 004971 275 VDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTSSY 346 (721)
Q Consensus 275 s~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~~~ 346 (721)
++||+ ++|...........||+....++ ..+.+... ......++||| ||++|+|.....|.+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~lld~~~l~~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~ 150 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEG--------EARVFLDPNILSDDGTVALRGYAFSE-DGEYFAYGLSASGSDW 150 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTS--------CCEEEECGGGGCTTSCEEEEEEEECT-TSSEEEEEEEETTCSC
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCC--------CcEEEECHHHhccCCCEEEEEEEECC-CCCEEEEEEcCCCCce
Confidence 36765 56654333222346786554332 33333221 22456789999 9999999988877776
Q ss_pred eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-------CCCCcceeEEEeccCCCCc-ceecc
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-------REDGNNQLLLENIKSPLPD-ISLFR 418 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~-~~~~~ 418 (721)
..|++||+++++....... ......++|||||+.|+|.+.+.... ......+++++++.++... .....
T Consensus 151 ~~i~v~d~~tg~~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~ 227 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE 227 (710)
T ss_dssp EEEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCCCCCCccccc---CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence 7899999999986654321 22356799999999999988654310 0011246888888765322 11111
Q ss_pred c---C--CCCceeCcCCCEEEEEe------CCcEEEEECCC------C--ceEEEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971 419 F---D--GSFPSFSPKGDRIAFVE------FPGVYVVNSDG------S--NRRQVY-FKNAFSTVWDPVREAVVYTSGGP 478 (721)
Q Consensus 419 ~---~--~~~~~~SpDG~~la~~~------~~~l~v~d~~~------g--~~~~l~-~~~~~~~~~spdg~~la~~~~~~ 478 (721)
. . ...+.|||||++|++.. ...|+++|+++ + ..+.+. ........|+|||++|++.++.
T Consensus 228 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~- 306 (710)
T 2xdw_A 228 FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR- 306 (710)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT-
T ss_pred cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC-
Confidence 1 1 12578999999999883 46899999986 5 456666 2223345699999999999742
Q ss_pred CCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC
Q 004971 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556 (721)
Q Consensus 479 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~ 556 (721)
......|+.++.++.. ....+.+..+.. ....++|++ +.+|++....++..+|+++++.+|+. +..+...
T Consensus 307 ----~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~--~~~l~~~ 378 (710)
T 2xdw_A 307 ----HSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL--LKIFPLE 378 (710)
T ss_dssp ----TCTTCEEEEEETTSCC-GGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE--EEEECCC
T ss_pred ----CCCCCEEEEEeCCCCC-cccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE--EEecCCC
Confidence 2346678888876530 012355555432 455678885 55677777777778999999966663 4566655
Q ss_pred CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEEeee
Q 004971 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRKLIQ 603 (721)
Q Consensus 557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~ 603 (721)
...+..++++||++.|++..... .....||+||+.+++ .+.+..
T Consensus 379 ~~~v~~~~~s~d~~~l~~~~ss~---~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 379 VGSVVGYSGQKKDTEIFYQFTSF---LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp SSEEEEEECCTTCSEEEEEEECS---SCCCEEEEEETTSSSCCCEEEEE
T ss_pred CceEEEEecCCCCCEEEEEEeCC---CCCCEEEEEECCCCccceEEeee
Confidence 55566788999999998876553 245689999999887 555543
No 97
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=5.3e-17 Score=168.45 Aligned_cols=263 Identities=13% Similarity=0.084 Sum_probs=175.1
Q ss_pred eeEEEEECCCCceEEeecccCCCC-cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eeccc-----
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKT-HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRF----- 419 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~-~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~----- 419 (721)
..|++||+.+++........ ... ....++|+|||+.+++..... ..++++++.++.... .....
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred CeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCCeEeeEEcCCccccc
Confidence 45999999998754433221 111 366899999999988765432 357777776553211 11111
Q ss_pred -CCCCceeCcCCCEEEEEe-------------CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 420 -DGSFPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 420 -~~~~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
....++|+|||++|++.. ...|++||+.+++..... ...+..+.|+|||++|++..
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------- 153 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------- 153 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC--------
Confidence 455689999999998883 588999999988754433 44567899999999998872
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc---------------------eeEEEEEC
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY---------------------KNLYIMDA 542 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~---------------------~~l~~~d~ 542 (721)
+.+.+| +..+. .....+.... ......|+|||++|++.....+. ..|++||+
T Consensus 154 -~~i~~~--d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 154 -RDLHVM--DPEAG---TLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -SSEEEE--ETTTT---EEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -CeEEEE--ECCCC---cEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 345554 44432 1223333322 22345899999988765432221 16899999
Q ss_pred CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l 622 (721)
.+++.. ...+.........++|+|||++|+++ +. .|++||+.+++...... ....+..++|+|||++|
T Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~-------~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 227 ETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YN-------VLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ES-------EEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEE
T ss_pred CCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CC-------eEEEEECCCCcCcceec--CCCceeeEEECCCCCEE
Confidence 998742 12222233345679999999998888 22 79999999987665554 33457789999999998
Q ss_pred EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT 662 (721)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt 662 (721)
++... . +.|++||+++++.. .+.
T Consensus 295 ~~~~~-~----------------~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 295 WLGGA-L----------------GDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEESB-S----------------SEEEEEETTTCCEEEEEE
T ss_pred EEEcC-C----------------CcEEEEECcCCcEEEEEE
Confidence 87633 2 25999999887654 444
No 98
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.78 E-value=9.4e-17 Score=166.48 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=160.0
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccC-cEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLN-PFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~-~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
.++|+| ||+++++.... +..|++||+++++. ..... . ...... ++|+|||++|+ .....+.. ..
T Consensus 44 ~~~~s~-dg~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~--~-~~~~~~~~~~s~dg~~l~-~~~~~~~~-----~~ 109 (331)
T 3u4y_A 44 DTAITS-DCSNVVVTSDF----CQTLVQIETQLEPPKVVAIQ--E-GQSSMADVDITPDDQFAV-TVTGLNHP-----FN 109 (331)
T ss_dssp EEEECS-SSCEEEEEEST----TCEEEEEECSSSSCEEEEEE--E-CSSCCCCEEECTTSSEEE-ECCCSSSS-----CE
T ss_pred eEEEcC-CCCEEEEEeCC----CCeEEEEECCCCceeEEecc--c-CCCCccceEECCCCCEEE-EecCCCCc-----cc
Confidence 889999 99988776542 23699999999874 22221 1 233445 89999999998 33333210 25
Q ss_pred eEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe--CCc-EEEEECCCCc-eE-----EEe-ecCceeeEEcCCCCe
Q 004971 402 LLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE--FPG-VYVVNSDGSN-RR-----QVY-FKNAFSTVWDPVREA 470 (721)
Q Consensus 402 l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~--~~~-l~v~d~~~g~-~~-----~l~-~~~~~~~~~spdg~~ 470 (721)
++++++..+.. ...........++|+|||++|++.. ... |++|+++... .. .+. ......+.|+|||++
T Consensus 110 i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 77888765421 1111122234679999999887773 467 9999986432 21 111 345678999999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
++++.. .++.+.+|++..... ......+... .....++|+|||++|++... +...|++||+.+++...+
T Consensus 190 l~v~~~------~~~~v~v~d~~~~~~--~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 190 AFVANL------IGNSIGILETQNPEN--ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp EEEEET------TTTEEEEEECSSTTS--CEEEEEEECS-SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEE
T ss_pred EEEEeC------CCCeEEEEECCCCcc--cceeeeccCC-CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeee
Confidence 988863 456777777653220 0014444433 46678999999999887754 256799999998874323
Q ss_pred EECcCC----Cc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 551 HRLTEG----PW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 551 ~~l~~~----~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
..+... .. ....++|+|||++|+++..+. ..|.+||+.+.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~------~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS------RELKVFTISGKVVGYV 310 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT------TEEEEEETTSCEEEEC
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCC------CcEEEEEecCCcccce
Confidence 222221 11 123479999999998888653 3799999987654433
No 99
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.78 E-value=1.2e-16 Score=176.66 Aligned_cols=354 Identities=12% Similarity=0.081 Sum_probs=224.1
Q ss_pred ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEec
Q 004971 222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVIL 299 (721)
Q Consensus 222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~ 299 (721)
+++|+|+.++. ...+ ..|.+||..+++.......... ..+|+|||+.+|.. ..++.+.+|++..
T Consensus 144 ~~~p~~~~~vs-~~~d-----------~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~--~~d~~V~v~D~~~ 209 (543)
T 1nir_A 144 DLDLPNLFSVT-LRDA-----------GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI--GRDARIDMIDLWA 209 (543)
T ss_dssp CCCGGGEEEEE-EGGG-----------TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEE--ETTSEEEEEETTS
T ss_pred ccCCCCEEEEE-EcCC-----------CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEE--CCCCeEEEEECcC
Confidence 58998865554 3222 4789999999987655432222 34799999876643 2357788885521
Q ss_pred CCCcceeccccceEEeCCCCCcccCceeecC---CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---------
Q 004971 300 PQTGLVSTESVSIQRVTPPGLHAFTPATSPG---NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS--------- 367 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~--------- 367 (721)
.... ....+. .+.....++|||. ||++|+..... +..|.+||..+++.........
T Consensus 210 ~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 210 KEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp SSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE----SSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred CCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc----CCeEEEEeccccccceeecccCcccCccccc
Confidence 2211 222333 3445678889872 68888775433 2459999999987544332111
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec--ccCCCCceeCcCCCEEEEEe--CCcEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF--RFDGSFPSFSPKGDRIAFVE--FPGVY 442 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~SpDG~~la~~~--~~~l~ 442 (721)
+...+..+.+||+++.+++... .. ..+++++...... .+... ......+.|+|||++++... .+.|.
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~-~~-------g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVK-ET-------GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEET-TT-------TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred cCCceEEEEECCCCCEEEEEEC-CC-------CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 1124556889999998877543 33 4677887755321 11111 12244579999999887763 67899
Q ss_pred EEECCCCceEEEee-c----CceeeE-EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC--CCccceEEcccCCCCCc
Q 004971 443 VVNSDGSNRRQVYF-K----NAFSTV-WDPVREAVVYTSGGPEFASESSEVDIISINVDDV--DGVSAVRRLTTNGKNNA 514 (721)
Q Consensus 443 v~d~~~g~~~~l~~-~----~~~~~~-~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~~~~~~ 514 (721)
+||+.+++...... + ...... ++|++..++++.. ..++.+.||.++..+. .....++.+..+.....
T Consensus 350 v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-----~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~ 424 (543)
T 1nir_A 350 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL 424 (543)
T ss_dssp EEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred EEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEecc-----CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce
Confidence 99999988654332 1 111233 4788777766642 1357888998876321 01235667776666678
Q ss_pred ceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEEC--------cCCCcCceeeEEccCCCEEEEEEccCCCC
Q 004971 515 FPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRL--------TEGPWSDTMCNWSPDGEWIAFASDRDNPG 582 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 582 (721)
.++++|||++|++.+... ....|.+||+++++.. .+.+ ..+...+.++.|+|||++|+++.....
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~-- 501 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK-- 501 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT--
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC--
Confidence 899999999999876211 1458999999988742 1332 344455678999999999999864210
Q ss_pred CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 583 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
+....|.+||..++++.+.... .. ..+|+|++-++
T Consensus 502 ~~~~~i~v~D~~t~~~~~~i~~---~~----~~~p~g~~~~~ 536 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKAVVKD---PR----LITPTGKFNVY 536 (543)
T ss_dssp TSCCEEEEEETTTTEEEEEECC---TT----CCSEEEEEEHH
T ss_pred CCCCeEEEEECCCceEEEeecC---CC----ccCCCeeeecc
Confidence 1234899999999988776542 11 25688887544
No 100
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.78 E-value=4.2e-17 Score=187.34 Aligned_cols=283 Identities=16% Similarity=0.117 Sum_probs=200.0
Q ss_pred EeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 314 RVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 314 ~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
.+..|...+..++++| ++ +.|+..+ .+..|++||+.++.. ........|...+..++|+|||+.|+..+.
T Consensus 377 ~l~~H~~~V~~v~~~~-~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPI-DNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEECCSSCEEEEECCT-TCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred hcccCCceeEEEEecC-CCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 3556766788899999 76 5555533 445699999976431 122334566777889999999999988765
Q ss_pred eCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCce
Q 004971 390 RGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAF 460 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~ 460 (721)
++. +.++++..+.. .+.........++|+|||++|+..+ ++.|.+||+.+.....+. ...+.
T Consensus 451 Dg~---------v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 451 DGE---------LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp TSE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CCc---------EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 554 56666655421 1122223345679999999998885 789999998766554443 23467
Q ss_pred eeEEcCCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971 461 STVWDPVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538 (721)
Q Consensus 461 ~~~~spdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~ 538 (721)
.+.|+|++. .|+..+ .++.++||++.... ....+..+...+..++|+|||++|+..+. +..|+
T Consensus 522 ~~~~~~~~~~~~l~s~s-------~d~~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~---Dg~i~ 586 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSAS-------WDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGK---DGVVL 586 (694)
T ss_dssp EEEECSCSSSCEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSBCE
T ss_pred EEEEeCCCCcceEEEEe-------CCCeEEEEECCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEE
Confidence 899999983 566554 57899999876432 45667777778889999999999998887 78899
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC------------
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS------------ 606 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~------------ 606 (721)
+||+.+++. +..+. ....+..++|+||+..|+.+... .|++||+.+++.........
T Consensus 587 iwd~~~~~~--~~~~~-~~~~v~~~~~sp~~~~l~~~~~~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 587 LWDLAEGKK--LYSLE-ANSVIHALCFSPNRYWLCAATEH--------GIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp EEETTTTEE--EECCB-CSSCEEEEEECSSSSEEEEEETT--------EEEEEETTTTEEEEEECCCCC-----------
T ss_pred EEECCCCce--EEEec-CCCcEEEEEEcCCCcEEEEEcCC--------CEEEEECCCCCChhhhcccccccccccccccc
Confidence 999998874 44443 34456889999999988776644 69999999886554332100
Q ss_pred ------CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 607 ------AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 607 ------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
...+..++|||||++|+..+.++ .|.+|++.
T Consensus 656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-----------------~i~iW~i~ 692 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGSTLFSGYTDG-----------------VIRVWGIG 692 (694)
T ss_dssp -----CCCCEEEEEECTTSSEEEEEETTS-----------------EEEEEEC-
T ss_pred ccCCceeEEeeeEEEcCCCCEEEEEcCCC-----------------eEEEEecc
Confidence 01135688999999999877665 38888874
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.78 E-value=2.8e-17 Score=172.03 Aligned_cols=289 Identities=10% Similarity=0.017 Sum_probs=194.3
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD---SSRVGYHKCRGGS 393 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~ 393 (721)
.+...+..++|+| +++.++..... ...+..|.+||+.+++...+... .+...+..++|+|+ |+.|+....++.
T Consensus 16 ~h~~~v~~~~~~p-~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~- 91 (357)
T 3i2n_A 16 GFNYTVFDCKWVP-CSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGN- 91 (357)
T ss_dssp ECSSCEEEEEECT-TSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSC-
T ss_pred CCCCceEEEEEcC-CCceEEEecCc-cCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCe-
Confidence 3555778999999 99877764322 11256799999999876544322 34567788999999 688887665544
Q ss_pred CCCCCcceeEEEeccCCCCcceecc---cCCCCc------eeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe--ec--
Q 004971 394 TREDGNNQLLLENIKSPLPDISLFR---FDGSFP------SFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY--FK-- 457 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~------~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~--~~-- 457 (721)
+.++++......+.... .....+ +|+|+++.|+..+ ++.|.+||+..++ ...+. .+
T Consensus 92 --------i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 92 --------LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp --------EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred --------EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 56666655431222221 112222 5789999998885 7889999998775 33333 11
Q ss_pred --CceeeE----EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc---CCCEEEEE
Q 004971 458 --NAFSTV----WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP---DGKWIVFR 528 (721)
Q Consensus 458 --~~~~~~----~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp---Dg~~l~~~ 528 (721)
.+..+. |+|+++.|+..+ .++.+.+|++... .......+...+..++|+| ++++|++.
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGY-------DNGDIKLFDLRNM------ALRWETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEE-------TTSEEEEEETTTT------EEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEc-------cCCeEEEEECccC------ceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 445555 889999999886 4678888876542 3344455556788899999 99999988
Q ss_pred EeeCCceeEEEEECCCCcccceE---ECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceE-----
Q 004971 529 STRTGYKNLYIMDAEGGEGYGLH---RLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLR----- 599 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~~~~---~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~----- 599 (721)
+. +..|++||+.+++..... .+..+...+..++|+|+|+ .|+.+..++ .|++||+..+...
T Consensus 231 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 231 SL---EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-------GLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp ES---TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-------EEEEEEEECCSCC--CCT
T ss_pred CC---CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-------cEEEeecCCCcccccccC
Confidence 76 778999999876541111 1225566778999999999 566666664 8999998754321
Q ss_pred ------------Ee-eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 600 ------------KL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 600 ------------~l-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.+ ....+...+..++|+|||++|+++...++ .|++||+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~----------------~i~iw~~~~~ 354 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ----------------TVRVLIVTKL 354 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS----------------EEEEEEECC-
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC----------------cEEEEECCCc
Confidence 11 11236677889999999999986555443 4999998754
No 102
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=1.4e-16 Score=167.63 Aligned_cols=297 Identities=10% Similarity=0.058 Sum_probs=176.8
Q ss_pred EEEEEEecCCCCeeeEEEE--ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-
Q 004971 334 FIAVATRRPTSSYRHIELF--DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP- 410 (721)
Q Consensus 334 ~la~~~~~~g~~~~~l~l~--dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~- 410 (721)
+.+|+..........|++| |.++++...+... +......++|||||++|++....+... +...+|..+..++
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~---~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQ---AAVSAFAFDKEKGT 88 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTT---CEEEEEEEETTTTE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCC---CcEEEEEEeCCCCc
Confidence 3344433333333445555 5677876666543 345566789999999999887652110 1133344443322
Q ss_pred CCcceecccCCCC-ceeCcCCCEEEEEe--CCcEEEEECCCC-ceEEE----e-ec-----------CceeeEEcCCCCe
Q 004971 411 LPDISLFRFDGSF-PSFSPKGDRIAFVE--FPGVYVVNSDGS-NRRQV----Y-FK-----------NAFSTVWDPVREA 470 (721)
Q Consensus 411 ~~~~~~~~~~~~~-~~~SpDG~~la~~~--~~~l~v~d~~~g-~~~~l----~-~~-----------~~~~~~~spdg~~ 470 (721)
...+......... ..++.||++|++.. .+.+.+|++... ....+ . .+ .+..++|+|||++
T Consensus 89 ~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 1122222211211 22334899888874 667999998643 22111 1 11 1245899999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccc-e------EEc-ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSA-V------RRL-TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~------~~l-~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~ 542 (721)
|+++.. .++.+.+|.++..+.....+ . ..+ .........++|+|||++|++.... ...|++|++
T Consensus 169 l~~~~~------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~ 240 (361)
T 3scy_A 169 LLADDL------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRY 240 (361)
T ss_dssp EEEEET------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEE
T ss_pred EEEEeC------CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEe
Confidence 998863 45788889887654100001 1 111 1222355678999999999888743 457889998
Q ss_pred CCCcccceEECcC---CCcCceeeEEccCCCEEEEEEcc-CCCCCCceeEEEEecC--CCceEEeeecCCCCCcCCeEEC
Q 004971 543 EGGEGYGLHRLTE---GPWSDTMCNWSPDGEWIAFASDR-DNPGSGSFEMYLIHPN--GTGLRKLIQSGSAGRANHPYFS 616 (721)
Q Consensus 543 ~~g~~~~~~~l~~---~~~~~~~~~~SpDG~~l~~~~~~-~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~S 616 (721)
++++...+..+.. +......++|||||++|+++... . ..|.+|+++ +++.+.+...........++||
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~------~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~s 314 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA------DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIIT 314 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS------CEEEEEEECTTTCCEEEEEEEECSSCCCEEEEC
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC------CEEEEEEEcCCCCcEEEeeEecCCCCCceEEEC
Confidence 8776432333322 12234589999999999877654 2 267777764 5665544332123456789999
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
|||++|+++....+.- .+|.+|.++++++.+..
T Consensus 315 pdg~~l~~~~~~~~~v--------------~v~~~d~~~g~~~~~~~ 347 (361)
T 3scy_A 315 PNGKYLLVACRDTNVI--------------QIFERDQATGLLTDIKK 347 (361)
T ss_dssp TTSCEEEEEETTTTEE--------------EEEEECTTTCCEEECSC
T ss_pred CCCCEEEEEECCCCCE--------------EEEEEECCCCcEeecce
Confidence 9999998887554321 36667888888877753
No 103
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.78 E-value=1.9e-16 Score=175.19 Aligned_cols=335 Identities=12% Similarity=0.069 Sum_probs=207.3
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
.++|++++|++. ..++.+.+|+. .. + +.......+..++.++||| ||++|+..+.. ..|.+|
T Consensus 144 ~~~p~~~~~vs~--~~d~~V~v~D~--~t-~-------~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d-----~~V~v~ 205 (543)
T 1nir_A 144 DLDLPNLFSVTL--RDAGQIALVDG--DS-K-------KIVKVIDTGYAVHISRMSA-SGRYLLVIGRD-----ARIDMI 205 (543)
T ss_dssp CCCGGGEEEEEE--GGGTEEEEEET--TT-C-------CEEEEEECSTTEEEEEECT-TSCEEEEEETT-----SEEEEE
T ss_pred ccCCCCEEEEEE--cCCCeEEEEEC--CC-c-------eEEEEEecCcccceEEECC-CCCEEEEECCC-----CeEEEE
Confidence 577888777743 33577777732 22 2 2322222222367788999 99998876432 559999
Q ss_pred EC--CCCceEEeecccCCCCcccCcEEcC----CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecc------
Q 004971 353 DL--VKNKFIELTRFVSPKTHHLNPFISP----DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFR------ 418 (721)
Q Consensus 353 dl--~tg~~~~l~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~------ 418 (721)
|+ .+++... ... .......++||| ||++|+....... .+.+++..+... .+....
T Consensus 206 D~~~~t~~~~~--~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~--------~v~v~D~~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 206 DLWAKEPTKVA--EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPP--------QFAIMDGETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp ETTSSSCEEEE--EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESS--------EEEEEETTTCCEEEEEECCEECSSSC
T ss_pred ECcCCCCcEEE--EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCC--------eEEEEeccccccceeecccCcccCcc
Confidence 99 7766332 222 244567899999 9999988776543 355555543311 111000
Q ss_pred -----cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceE---EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 419 -----FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRR---QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 419 -----~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~---~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
.....+.+||++..+++. ..+.|++||..+.+.. .+. ...+..+.|+|||+++++++. .++.+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~------~~~~v 348 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN------NSNKV 348 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG------GGTEE
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec------CCCeE
Confidence 012346889999887776 3678999999876532 232 345678999999999988763 35667
Q ss_pred EEEEEEccCCCCccceEEcccCC--CCCcceE-EccCCCEEEEEEeeCCceeEEEEECCC-------CcccceEECcCCC
Q 004971 488 DIISINVDDVDGVSAVRRLTTNG--KNNAFPS-VSPDGKWIVFRSTRTGYKNLYIMDAEG-------GEGYGLHRLTEGP 557 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~SpDg~~l~~~s~~~g~~~l~~~d~~~-------g~~~~~~~l~~~~ 557 (721)
.+|+. .++ .....+.... ....... ++|++..+++++. .++..|.+||.++ .+. +..+..+.
T Consensus 349 ~v~D~--~tg---~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g 420 (543)
T 1nir_A 349 AVIDS--KDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKK--VAELQGQG 420 (543)
T ss_dssp EEEET--TTT---EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSE--EEEEECSC
T ss_pred EEEEC--CCC---eEEEeeccCCCCCCCCCcccCCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeE--EEEEEcCC
Confidence 77554 332 1233343221 1112233 4788777655542 2356899999987 443 66666554
Q ss_pred cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE-Eeee-------cCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-KLIQ-------SGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.....+.++|||++|+....-.........|.+||+++++.. +... ..+...+.++.|+|||++|+++....
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 445679999999999887621100001238999999988754 3321 11345678899999999999875421
Q ss_pred CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
... .+.|.+||.++++++..-
T Consensus 501 ~~~------------~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 501 KND------------SSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp TTS------------CCEEEEEETTTTEEEEEE
T ss_pred CCC------------CCeEEEEECCCceEEEee
Confidence 100 135999999998876443
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.77 E-value=2e-16 Score=162.69 Aligned_cols=284 Identities=10% Similarity=0.044 Sum_probs=200.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....++||+ ++ .|+... +..|++||+++++...+.....+...+..++|+|+|+.|+..+.++.
T Consensus 27 y~~~l~WS~-~~-~lAvg~------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~-------- 90 (318)
T 4ggc_A 27 YLNLVDWSS-GN-VLAVAL------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE-------- 90 (318)
T ss_dssp TCBCEEECT-TS-EEEEEE------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE--------
T ss_pred cceEEEECC-CC-EEEEEe------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc--------
Confidence 345689999 87 666642 34599999999987666555566777889999999999998765554
Q ss_pred eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE--Ee--ecCceeeEEcCCCCeEEEEe
Q 004971 401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ--VY--FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~--l~--~~~~~~~~~spdg~~la~~~ 475 (721)
+.++++..+...............++++++.++... ...+.+++...+.... +. ...+....++++++.|+..+
T Consensus 91 -v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 91 -VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp -EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 556666554221122222233356778888887775 6677888877655332 22 45677889999999999876
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~ 555 (721)
.++.+.||++..... ..............+....++|++..++..........|.+||...+. ......
T Consensus 170 -------~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~~ 238 (318)
T 4ggc_A 170 -------NDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAVD 238 (318)
T ss_dssp -------TTSCEEEEESSCBTT-BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEEE
T ss_pred -------cCcceeEEECCCCcc-cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---cccccc
Confidence 578899998765432 001223333344566778999998888776655556789999998876 333334
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 635 (721)
....+....|+|+++.+++++... ...|++||+.+++...... +|...+..++|+|||++|+..+.++
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~-----d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~------ 306 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFA-----QNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADE------ 306 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTT-----TCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTT------
T ss_pred ceeeeeeeeecccccceEEEEEcC-----CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCC------
Confidence 445567899999999998877431 2379999999988766554 3788899999999999999877765
Q ss_pred CCCCCCCCCCccEEEEEcCC
Q 004971 636 ISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~ 655 (721)
.|.+||+..
T Consensus 307 -----------~v~iWd~~~ 315 (318)
T 4ggc_A 307 -----------TLRLWRCFE 315 (318)
T ss_dssp -----------EEEEECCSC
T ss_pred -----------eEEEEECCC
Confidence 388998754
No 105
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-16 Score=162.79 Aligned_cols=279 Identities=8% Similarity=0.013 Sum_probs=195.5
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG 391 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 391 (721)
...+..+...+..++| | ++++|+... .++.|.+||+.+++..... ..+...+..++|+|+++.|+....++
T Consensus 11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-V-DDSKVASVS-----RDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EEEECCCSSCEEEEEE-E-ETTEEEEEE-----TTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHhhCCCCCcEEEEe-c-CCCEEEEEE-----cCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCC
Confidence 3445566667788889 8 999888754 3456999999887644333 34567788899999999999876655
Q ss_pred CCCCCCCcceeEEEeccCCC--Ccceec---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe--ecCceee
Q 004971 392 GSTREDGNNQLLLENIKSPL--PDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY--FKNAFST 462 (721)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~--~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~--~~~~~~~ 462 (721)
. +.++++.... ..+... ......+.| +++.++..+ ++.|.+|| .++. ..+. ...+..+
T Consensus 82 ~---------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 82 M---------INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp C---------EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred e---------EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence 4 4445543321 111111 111222344 677887774 78899999 3332 3333 4567788
Q ss_pred EEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 463 VWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 463 ~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
.|+| +++.++..+ .++.+.+|+ .. .....+.. +...+..++|+|+++ |+..+. +..|++|
T Consensus 149 ~~~~~~~~~l~~~~-------~d~~i~i~d--~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~ 210 (313)
T 3odt_A 149 KVVSFSENKFLTAS-------ADKTIKLWQ--ND-----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLV 210 (313)
T ss_dssp EEEETTTTEEEEEE-------TTSCEEEEE--TT-----EEEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEE
T ss_pred EEccCCCCEEEEEE-------CCCCEEEEe--cC-----ceEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEE
Confidence 8888 899888876 568899997 21 14445554 556778899999998 766665 6789999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
|+.+++. +..+..+...+..++|+|||+ |+.+..++ .|++||+.+++....... +...+..+.|+|||+
T Consensus 211 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg-------~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 211 DMHTGDV--LRTYEGHESFVYCIKLLPNGD-IVSCGEDR-------TVRIWSKENGSLKQVITL-PAISIWSVDCMSNGD 279 (313)
T ss_dssp ETTTCCE--EEEEECCSSCEEEEEECTTSC-EEEEETTS-------EEEEECTTTCCEEEEEEC-SSSCEEEEEECTTSC
T ss_pred ECCchhh--hhhhhcCCceEEEEEEecCCC-EEEEecCC-------EEEEEECCCCceeEEEec-cCceEEEEEEccCCC
Confidence 9998875 556666667788999999994 77777664 899999999887666553 566788999999999
Q ss_pred EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
. +..+.++ .|++||+.+++..
T Consensus 280 ~-~~~~~dg-----------------~i~iw~~~~~~~~ 300 (313)
T 3odt_A 280 I-IVGSSDN-----------------LVRIFSQEKSRWA 300 (313)
T ss_dssp E-EEEETTS-----------------CEEEEESCGGGCC
T ss_pred E-EEEeCCC-----------------cEEEEeCCCCcee
Confidence 4 4444433 4999999877543
No 106
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.77 E-value=2.8e-16 Score=163.45 Aligned_cols=279 Identities=12% Similarity=0.055 Sum_probs=172.3
Q ss_pred eeeEEEEECC-CCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCCC-cceec--cc
Q 004971 346 YRHIELFDLV-KNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPLP-DISLF--RF 419 (721)
Q Consensus 346 ~~~l~l~dl~-tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~--~~ 419 (721)
+..|++||+. +++...+... .+...+..++|+|||++|++...... .+.++++. ++.. .+... ..
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEF--------RVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTT--------EEEEEEECTTTCCEEEEEEEECSS
T ss_pred CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCC--------eEEEEEecCCCCceeeccccccCC
Confidence 4569999985 4443333322 23455678999999999988765422 34454444 3321 11111 12
Q ss_pred CCCCceeCcCCCEEEEEe--CCcEEEEECCCCc---eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSN---RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~---~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
....++|+|||++|++.. .+.|.+|++..+. ..... ...+..++|+|||++|+++.. .++.+.+|++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~ 158 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------KQDRICLFTV 158 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG------GGTEEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC------CCCEEEEEEe
Confidence 345678999999988874 5679999995332 22222 345778999999999988762 3567888888
Q ss_pred EccCCCCccceE--EcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEEC---cCC---CcCce
Q 004971 493 NVDDVDGVSAVR--RLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRL---TEG---PWSDT 561 (721)
Q Consensus 493 ~~~~~~~~~~~~--~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l---~~~---~~~~~ 561 (721)
..++. ..... .+... ......++|+|||++|++.... ...|++|+++ +++......+ ..+ .....
T Consensus 159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 159 SDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp CTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred cCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 65331 00111 22222 2345668999999999887643 5678899984 3542212222 111 12234
Q ss_pred eeEEccCCCEEEEEEccCCCCCCceeEEEEecC--CCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN--GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~ 639 (721)
.++|+|||++|+++.... ..|++|+++ +++.+.+........+..++|+|||++|++.....+.
T Consensus 235 ~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-------- 300 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH-------- 300 (343)
T ss_dssp EEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE--------
T ss_pred ceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCe--------
Confidence 689999999998776432 278999887 5444443222123447889999999999887754432
Q ss_pred CCCCCCccEEEEEcCCCCeEEecc
Q 004971 640 HQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 640 ~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
-.+|.+|.++++.+++..
T Consensus 301 ------v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 301 ------ISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp ------EEEEEEETTTTEEEEEEE
T ss_pred ------EEEEEEcCCCceeeEccc
Confidence 124445777887766654
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-17 Score=177.44 Aligned_cols=256 Identities=10% Similarity=0.007 Sum_probs=173.4
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
..+..++||| ||+.+|.+ +.+..|. |.+.++ .+ .+|...+..++|+||| ..+...
T Consensus 16 ~~v~sv~~Sp-DG~~iASa-----s~D~TV~--d~~~~~--~l---~gh~~~v~~V~FsPdg-------~~~~~~----- 70 (588)
T 2j04_A 16 DWKNNLTWAR-DGTLYLTT-----FPDISIG--QPKYAK--DI---NCNSKNLFHVKEFPLE-------FENKLD----- 70 (588)
T ss_dssp SSSCCEEECT-TSCEEEEC-----SSSEEEE--EECCCS--CC---SSBGGGTEEEEEECCC-------CCCTTT-----
T ss_pred ccEEEEEECC-CCCEEEEE-----cCCceee--cccccc--ee---cCCCccEEEEEECCCC-------CcceEE-----
Confidence 4678999999 99999884 3455565 765554 22 4567788899999999 112111
Q ss_pred ceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeec------CceeeEEcCCCCeE
Q 004971 400 NQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFK------NAFSTVWDPVREAV 471 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~------~~~~~~~spdg~~l 471 (721)
++ +.. +...+. ........++|||||++||..+ ++.+.+|+.++ ....+... .+..++|||||++|
T Consensus 71 --~~--~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~L 144 (588)
T 2j04_A 71 --FE--LAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSI 144 (588)
T ss_dssp --TS--CCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCE
T ss_pred --EE--eCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEE
Confidence 11 001 111111 0122244579999999999985 78899999654 22222211 36789999999999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCc--cceEEc----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGV--SAVRRL----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
|.++ .++.++||++....-.+. .....+ ..+...+..++||||| |+..+. +..+++||++++
T Consensus 145 Asgs-------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~ 212 (588)
T 2j04_A 145 VVGN-------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSAS 212 (588)
T ss_dssp EEEE-------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSS
T ss_pred EEEc-------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCC
Confidence 9997 689999999875320000 013444 3344678889999999 666665 789999999987
Q ss_pred ccc-ceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE--CCCCCE
Q 004971 546 EGY-GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF--SPDGKS 621 (721)
Q Consensus 546 ~~~-~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~--SpDG~~ 621 (721)
+.. ....+. .+...+..++|+ |+.|+.++. + .|++||+.+++...+.. ++...+..++| ||||+.
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~-~-------tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP-G-------YVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS-S-------EEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEE
T ss_pred ccccceeeecccccCcEEEEEEE--CCEEEEEeC-C-------eEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCE
Confidence 731 123342 445667899999 688888764 3 89999999887655543 47788899999 999988
Q ss_pred EEEEEecC
Q 004971 622 IVFTSDYG 629 (721)
Q Consensus 622 l~~~~~~~ 629 (721)
|+.+..++
T Consensus 282 La~a~edG 289 (588)
T 2j04_A 282 LLMSNKTS 289 (588)
T ss_dssp EEECSSCE
T ss_pred EEEEcCCC
Confidence 87765444
No 108
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=3.4e-17 Score=171.13 Aligned_cols=263 Identities=14% Similarity=0.205 Sum_probs=173.2
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC------CcEEEEE
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF------PGVYVVN 445 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~------~~l~v~d 445 (721)
+..+.+ ||++|+|...............+++.++.++.. ... .....+.|||||++|+|... ..|++++
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--RFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--EEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--EEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 345677 999999976543211111125688888876532 222 34556899999999999842 2499999
Q ss_pred CCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCC------------CC-C-----CCCcEEEEEEEccCCCCccce-E
Q 004971 446 SDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPE------------FA-S-----ESSEVDIISINVDDVDGVSAV-R 504 (721)
Q Consensus 446 ~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~------------~~-~-----~~~~~~i~~~~~~~~~~~~~~-~ 504 (721)
+++++.+++. .. +..+.|||||++|++.+.... +. . ......||.++..++ +. +
T Consensus 92 ~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----~~~~ 166 (347)
T 2gop_A 92 LETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----EVIE 166 (347)
T ss_dssp TTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT----EEEE
T ss_pred CCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----eEEe
Confidence 9999887777 33 788999999999999874210 00 0 012467888888764 55 6
Q ss_pred EcccCCCCCcceEEccCCCEEEEEEeeCC-------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTG-------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.++. . ....++||||| +++...... ..+||++| +++ ...++.+ .... .+||||++|++...
T Consensus 167 ~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~-~~~~--~~spdg~~l~~~~~ 234 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK---EEKMFEK-VSFY--AVDSDGERILLYGK 234 (347)
T ss_dssp EEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE---EEEEEEE-ESEE--EEEECSSCEEEEEC
T ss_pred eecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc---eEEeccC-ccee--eECCCCCEEEEEEc
Confidence 6666 4 67789999999 666654432 45899999 666 5555544 3333 34999999999886
Q ss_pred cCCC-CCCceeEEEEecCCCceEEeeecCCCCCcCC-eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 578 RDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 578 ~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.... ......||++| +++.+.++.. +...+.. +.|+ || +++.....+. .+|| ++ +
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg--~~~~~~~~~~--------------~~l~-~~--~ 291 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK--VYFTLFEEGS--------------VNLY-IW--D 291 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE--EEEEEEETTE--------------EEEE-EE--S
T ss_pred cccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc--EEEEEecCCc--------------EEEE-Ec--C
Confidence 5310 01245899999 6666666542 3445565 8999 98 5555544432 2588 87 4
Q ss_pred CCeEEeccCCCCCCCceecCCcCCc
Q 004971 656 SDLKRLTQNSFEDGTPAWGPRFIRP 680 (721)
Q Consensus 656 ~~~~~lt~~~~~~~~~~~sp~~l~~ 680 (721)
++.++++.+.+.+..++|+| .++.
T Consensus 292 g~~~~~~~~~~~v~~~~~s~-~~~~ 315 (347)
T 2gop_A 292 GEIKPIAKGRHWIMGFDVDE-IVVY 315 (347)
T ss_dssp SSEEEEECSSSEEEEEEESS-SEEE
T ss_pred CceEEEecCCCeEEeeeeeC-cEEE
Confidence 56677776655567788998 4433
No 109
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.76 E-value=3.2e-16 Score=181.12 Aligned_cols=303 Identities=12% Similarity=0.008 Sum_probs=201.0
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECC---CCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLV---KNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~---tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
.+| ||++++|.....+.....||+.+.. +++.+.+.... .+......++|||||++|+|....++.. .
T Consensus 114 p~p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e----~ 188 (741)
T 1yr2_A 114 PQR-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD----W 188 (741)
T ss_dssp CEE-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS----E
T ss_pred CEE-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc----e
Confidence 358 9999999887766556778999986 66655543221 1112456789999999999988775521 1
Q ss_pred ceeEEEeccCCCCcc-eecccCCCCceeCcCCCEEEEEe---------------CCcEEEEECCCCce--EEEee--c--
Q 004971 400 NQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVE---------------FPGVYVVNSDGSNR--RQVYF--K-- 457 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~la~~~---------------~~~l~v~d~~~g~~--~~l~~--~-- 457 (721)
..+++.++.++.... .........++|||| +.|+|.. ...|+++++.++.. +.+.. .
T Consensus 189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~ 267 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP 267 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence 468899987764211 111122256899999 9999984 22499999987763 34441 1
Q ss_pred -CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc-eEEcccCCCCCcceEEccCCCEEEEEEeeCC-c
Q 004971 458 -NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-Y 534 (721)
Q Consensus 458 -~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-~ 534 (721)
....+.|||||++|++.+... .+....||.++.++. ... .+.|.........+ ++|||++|++.++.+. .
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~----~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEG----TDPVNTVHVARVTNG--KIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECT----TCSCCEEEEEEEETT--EECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred eEEEEEEECCCCCEEEEEEEcc----CCCcceEEEEECCCC--CCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 356899999999999987421 113445665555431 013 56666554344444 5699999999988654 6
Q ss_pred eeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 613 (721)
.+|+++|++++. .....+..+. ..+..++|+ +..|++..... +...|++++++++..+.+... ..+.+..+
T Consensus 341 ~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l~~~-~~~~v~~~ 412 (741)
T 1yr2_A 341 KKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYIHD----AKSQVLAFDLDGKPAGAVSLP-GIGSASGL 412 (741)
T ss_dssp CEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEEET----TEEEEEEEETTSCEEEECBCS-SSCEEEEE
T ss_pred CEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEEEC----CEEEEEEEeCCCCceeeccCC-CCeEEEEe
Confidence 689999998742 1144554332 223445565 56777777653 667899999877655555431 24556778
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.++|||+.|++....... ++.||.||+++++.+.+..
T Consensus 413 ~~s~d~~~l~~~~ss~~~-------------P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQ-------------PATVLALDPATAKTTPWEP 449 (741)
T ss_dssp ECCBTCSCEEEEEEETTE-------------EEEEEEEETTTTEEEECSC
T ss_pred ecCCCCCEEEEEEcCCCC-------------CCEEEEEECCCCcEEEEec
Confidence 899999988877654433 3579999999988777765
No 110
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=3.6e-16 Score=163.49 Aligned_cols=264 Identities=9% Similarity=0.053 Sum_probs=179.3
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSD 447 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~ 447 (721)
....++|+|||++|++....+.... ....+++++..++... ..........++|+|||+++++.. .+.|++||+.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLD--KGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTE--ESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCcCCC--CCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 3456899999999988765432100 0146788877655321 111223356689999999888874 5789999999
Q ss_pred CCceEE-Eeec--C---------ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971 448 GSNRRQ-VYFK--N---------AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF 515 (721)
Q Consensus 448 ~g~~~~-l~~~--~---------~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 515 (721)
+++... +..+ . +..+.|+|||+++++...+ .++ .|+.++..+. .....+.........
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~--~i~~~d~~~~---~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KES--VIWVVDGGNI---KLKTAIQNTGKMSTG 189 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SSC--EEEEEETTTT---EEEEEECCCCTTCCC
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----CCc--eEEEEcCCCC---ceEEEecCCCCccce
Confidence 888643 3321 1 4678999999999887631 123 4555555543 133344424445778
Q ss_pred eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
++|+|||++|++... +..|++||+.+++. ...+.. .......++|+|||++|++..... ..|++|
T Consensus 190 ~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~ 258 (353)
T 3vgz_A 190 LALDSEGKRLYTTNA---DGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKA------AEVLVV 258 (353)
T ss_dssp CEEETTTTEEEEECT---TSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS------SEEEEE
T ss_pred EEECCCCCEEEEEcC---CCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC------CEEEEE
Confidence 999999999988865 67899999998875 333332 122345689999999998877542 389999
Q ss_pred ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCc
Q 004971 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~ 671 (721)
|+.+++....... +....++|+|||++|++.....+ .|++||+++++.............+
T Consensus 259 d~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~----------------~v~~~d~~~~~~~~~~~~~~~~~~~ 319 (353)
T 3vgz_A 259 DTRNGNILAKVAA---PESLAVLFNPARNEAYVTHRQAG----------------KVSVIDAKSYKVVKTFDTPTHPNSL 319 (353)
T ss_dssp ETTTCCEEEEEEC---SSCCCEEEETTTTEEEEEETTTT----------------EEEEEETTTTEEEEEEECCSEEEEE
T ss_pred ECCCCcEEEEEEc---CCCceEEECCCCCEEEEEECCCC----------------eEEEEECCCCeEEEEEecCCCCCeE
Confidence 9999887665543 22367999999999887765443 4999999888766544444455678
Q ss_pred eecCC
Q 004971 672 AWGPR 676 (721)
Q Consensus 672 ~~sp~ 676 (721)
+|+|+
T Consensus 320 ~~s~d 324 (353)
T 3vgz_A 320 ALSAD 324 (353)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 88886
No 111
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.76 E-value=4.8e-18 Score=179.77 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=165.5
Q ss_pred CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971 320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399 (721)
Q Consensus 320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~ 399 (721)
..+..++|+| ||++|+.. ..+..|++||+.++....+.....+...+..++|+|+|+.|+..+.++.
T Consensus 12 ~~v~~~~~s~-~g~~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~------- 78 (377)
T 3dwl_C 12 KPSYEHAFNS-QRTEFVTT-----TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN------- 78 (377)
T ss_dssp SCCSCCEECS-SSSEEECC-----CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS-------
T ss_pred CcEEEEEECC-CCCEEEEe-----cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe-------
Confidence 3568899999 99988873 3456699999998854466666667788889999999999998776554
Q ss_pred ceeEEEeccCCC---Ccc--eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc----eEEEe---ecCceeeEEcC
Q 004971 400 NQLLLENIKSPL---PDI--SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN----RRQVY---FKNAFSTVWDP 466 (721)
Q Consensus 400 ~~l~~~~~~~~~---~~~--~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~----~~~l~---~~~~~~~~~sp 466 (721)
+.++++..+. ... .........++|+|||+.|+..+ ++.|.+||+.+++ ...+. ...+..++|+|
T Consensus 79 --v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 79 --AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp --EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred --EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 5555554432 111 11222344579999999998885 7889999998876 34443 45678999999
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-------------ccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDG-------------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
+++.|+..+ .++.+.+|++....... ......+ .+...+..++|+|||++|++.+.
T Consensus 157 ~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~--- 225 (377)
T 3dwl_C 157 NNVLLAAGC-------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH--- 225 (377)
T ss_dssp TSSEEEEEE-------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET---
T ss_pred CCCEEEEEe-------CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC---
Confidence 999999887 56889999986322100 0122233 45566788999999999999886
Q ss_pred ceeEEEEECCCCccc--ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 534 YKNLYIMDAEGGEGY--GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~--~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+..|++||+.+++.. .+..+..+...+..++|+|||+.|+.+..+ .+.+|+..
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--------~~~~~~~~ 280 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY--------SPILLQGN 280 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS--------SEEEECCC
T ss_pred CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC--------cEEEEEeC
Confidence 778999999987631 023344555667899999999988777654 45577665
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.75 E-value=8.1e-17 Score=172.06 Aligned_cols=290 Identities=11% Similarity=0.049 Sum_probs=193.2
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~ 398 (721)
...++++| + .+++... +..++.|.+|++..... ..+.....|...+..++|+| +++.|+....++.
T Consensus 37 ~~~~~~~~-~--~~~~~~~--~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~------ 105 (402)
T 2aq5_A 37 SGFCAVNP-K--FMALICE--ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT------ 105 (402)
T ss_dssp SCSEEECS-S--EEEEEBC--CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE------
T ss_pred CCcEEECC-C--eEEEEEE--EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe------
Confidence 34566766 4 4444222 23456699999965431 12233445677888999999 8888888765544
Q ss_pred cceeEEEeccCCC------Cccee---cccCCCCceeCcCC-CEEEEEe-CCcEEEEECCCCceE-EE--e--ecCceee
Q 004971 399 NNQLLLENIKSPL------PDISL---FRFDGSFPSFSPKG-DRIAFVE-FPGVYVVNSDGSNRR-QV--Y--FKNAFST 462 (721)
Q Consensus 399 ~~~l~~~~~~~~~------~~~~~---~~~~~~~~~~SpDG-~~la~~~-~~~l~v~d~~~g~~~-~l--~--~~~~~~~ 462 (721)
+.++++.... ..+.. .......++|+|+| +.|+..+ ++.|.+||+.+++.. .+ . ...+..+
T Consensus 106 ---v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 106 ---VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp ---EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred ---EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 5566655431 11111 22334457999998 4666664 788999999988754 44 2 4567899
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-ccCCC-CCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-TTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
.|+|||+.|+..+ .++.+.||++.... ....+ ..+.. ....+.|+|||+.|++......+..|++|
T Consensus 183 ~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 183 DWSRDGALICTSC-------RDKRVRVIEPRKGT-----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp EECTTSSCEEEEE-------TTSEEEEEETTTTE-----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred EECCCCCEEEEEe-------cCCcEEEEeCCCCc-----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 9999999999987 56888888875432 34444 34443 36789999999988887433347899999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEEeeecCCCCCcCCeEECCC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~SpD 618 (721)
|+.+++.........+...+..++|+|||+.|+++.... ..|++||+.+++ ...+....+...+..++|+||
T Consensus 251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 998765311112223344568899999999998777432 279999998887 444443224577889999999
Q ss_pred CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
|++++. .+. .+.+|++.+++...+.
T Consensus 325 ~~~~~s--~~~-----------------~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 325 RGLEVN--KCE-----------------IARFYKLHERKCEPIA 349 (402)
T ss_dssp GGSCGG--GTE-----------------EEEEEEEETTEEEEEE
T ss_pred ccccee--cce-----------------eEEEEEcCCCcEEEEE
Confidence 998753 111 3777888777665543
No 113
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.75 E-value=6.8e-17 Score=169.64 Aligned_cols=288 Identities=12% Similarity=0.065 Sum_probs=193.0
Q ss_pred CCCCcccCceeecCC---CCEEEEEEecCCCCeeeEEEEECCCCceE-Eeeccc--CCCCcccCcEEcCC----CCEEEE
Q 004971 317 PPGLHAFTPATSPGN---NKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFV--SPKTHHLNPFISPD----SSRVGY 386 (721)
Q Consensus 317 ~~~~~~~~~~~sp~d---G~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~~--~~~~~~~~~~~Spd----g~~l~~ 386 (721)
.+...+..++|+| + ++.++++....+ .|.+||+.+++.. .+.... .+...+..++|+|+ |+.|+.
T Consensus 16 ~h~~~v~~i~~~p-~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 16 DHNQPLFGVQFNW-HSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp TTCSCEEEEEECT-TCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEEec-ccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 4566778899998 6 654555443322 4999999977643 232221 13456788999999 556776
Q ss_pred EEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceEEEe------e
Q 004971 387 HKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQVY------F 456 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~l~------~ 456 (721)
...++ .+.++++...... +.........+.|+| +++.|+..+ ++.|.+||+.+++..... .
T Consensus 91 ~~~dg---------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 91 AGSRG---------IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp EETTC---------EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred ecCCC---------EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 55443 3666666544221 111223345579999 899888885 789999999988754432 4
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-----------------------ccceEEcccCCCCC
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG-----------------------VSAVRRLTTNGKNN 513 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~~~~~~l~~~~~~~ 513 (721)
..+..+.|+|+++.|+..+ .++.+.+|++....... .........+...+
T Consensus 162 ~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCG-------MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp SCEEEEEECTTSSEEEEEE-------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred CceeEEEECCCCCEEEEec-------CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 5678999999999999886 56889999876432000 00011111245567
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------cceEECcCCCcCceeeEEccC--CCEEEEEEccC
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------YGLHRLTEGPWSDTMCNWSPD--GEWIAFASDRD 579 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------~~~~~l~~~~~~~~~~~~SpD--G~~l~~~~~~~ 579 (721)
..++|+ +++|+..+. +..|++||+.+++. ..+..+..+...+..++|+|| |+.|+.+..++
T Consensus 235 ~~~~~~--~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC---ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CEEEEE--TTEEEEECS---SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred EEEEEc--CCEEEEEec---CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 778888 778887776 77899999887643 113334444555778999999 99999888775
Q ss_pred CCCCCceeEEEEecCCCceE---EeeecCC--CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 580 NPGSGSFEMYLIHPNGTGLR---KLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~~~~---~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
.|++||+.+++.. ......+ ...+..++|+|||++|+..+.++ .|++||+.
T Consensus 310 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----------------~i~iwd~~ 365 (366)
T 3k26_A 310 -------KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-----------------SIWRWDRL 365 (366)
T ss_dssp -------CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------------EEEEEEC-
T ss_pred -------cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-----------------EEEEEEec
Confidence 8999999887532 1111123 56788999999999999877665 49999975
No 114
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.75 E-value=7.9e-16 Score=176.15 Aligned_cols=303 Identities=10% Similarity=0.051 Sum_probs=204.5
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l 402 (721)
.++ +|.+++|..+..+.....++......+. ..+... .++...+..++|||||++|+|.....+... ..|
T Consensus 84 p~~-~g~~~y~~~~~~~~~~~~~~r~~~~~~~-~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~----~~i 157 (693)
T 3iuj_A 84 PFR-EGRYHYFFKNDGLQNQNVLWRQQEGKPA-EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDW----REI 157 (693)
T ss_dssp CEE-ETTEEEEEEECSSCSSCEEEEECTTSCC-EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCE----EEE
T ss_pred CEE-ECCEEEEEEEcCCCceeEEEEeCCCCCc-EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCce----EEE
Confidence 356 8888888766655544455554443333 333221 112234567899999999999887655321 568
Q ss_pred EEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEeC--------------CcEEEEECCCCce--EEEe--ec----Cc
Q 004971 403 LLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEF--------------PGVYVVNSDGSNR--RQVY--FK----NA 459 (721)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~~--------------~~l~v~d~~~g~~--~~l~--~~----~~ 459 (721)
++.++.++... ..........++|| ||+.|+|... ..|+++++.++.. +.+. .. ..
T Consensus 158 ~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~ 236 (693)
T 3iuj_A 158 HLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRY 236 (693)
T ss_dssp EEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSE
T ss_pred EEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEE
Confidence 89998877421 11112223568999 9999999842 2499999987653 4555 22 23
Q ss_pred eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC-ceeEE
Q 004971 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-YKNLY 538 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-~~~l~ 538 (721)
..+.|||||++|++.... ......||.++.++. ....+.+.........+ |+++|++|++.+++++ ..+|+
T Consensus 237 ~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~~--~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAAN-----STSGNRLYVKDLSQE--NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp EEEEECTTSCEEEEEEES-----SSSCCEEEEEETTST--TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEcCCCCEEEEEEcc-----CCCCcEEEEEECCCC--CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 578999999999988631 122346777776542 11456666655444444 8999999999988654 56899
Q ss_pred EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD 618 (721)
++|++++.....+.+..+..... .|+|+|++|++...+. +...|++++++++..+.+... ..+.+..+.+++|
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~l~~p-~~~~~~~~~~~~d 381 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVREVALP-GLGSVSGFNGKHD 381 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEEECCS-SSSEEEECCCCTT
T ss_pred EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEEeecC-CCceEEeeecCCC
Confidence 99999876433355655544333 9999999999998874 677899999998776666432 3344566778999
Q ss_pred CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
++.|++....... ++.||.+|+++++.+.|+..
T Consensus 382 ~~~l~~~~ss~~t-------------P~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 382 DPALYFGFENYAQ-------------PPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CSCEEEEEECSSS-------------CCEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEecCCCC-------------CCEEEEEECCCCeEEEEEeC
Confidence 9999887665332 35799999999988888763
No 115
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.75 E-value=5.2e-17 Score=175.53 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=183.5
Q ss_pred cceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971 271 WPCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 271 ~~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l 349 (721)
..+|+|. +.++++ ...+|.+.||++...... ....+..+...+..++|+|.++++|+.. +.+..|
T Consensus 124 ~l~~~P~~~~~las--Gs~dg~i~lWd~~~~~~~-------~~~~~~gH~~~V~~l~f~p~~~~~l~s~-----s~D~~v 189 (435)
T 4e54_B 124 SLAWHPTHPSTVAV--GSKGGDIMLWNFGIKDKP-------TFIKGIGAGGSITGLKFNPLNTNQFYAS-----SMEGTT 189 (435)
T ss_dssp EEEECSSCTTCEEE--EETTSCEEEECSSCCSCC-------EEECCCSSSCCCCEEEECSSCTTEEEEE-----CSSSCE
T ss_pred EEEEeCCCCCEEEE--EeCCCEEEEEECCCCCce-------eEEEccCCCCCEEEEEEeCCCCCEEEEE-----eCCCEE
Confidence 3479984 556553 334799999965433321 2223345666788999998356777663 245669
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCc
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSP 428 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Sp 428 (721)
.+||++++....+.........+..++|+|+++.|+....++. +.++++.+.. ..+.........++|+|
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~---------i~~wd~~~~~~~~~~~h~~~v~~v~~~p 260 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN---------VILLNMDGKELWNLRMHKKKVTHVALNP 260 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB---------EEEEESSSCBCCCSBCCSSCEEEEEECT
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc---------EeeeccCcceeEEEecccceEEeeeecC
Confidence 9999988765555443333445677899999999987654443 6666765431 22222233345679999
Q ss_pred CCCEEEE-Ee-CCcEEEEECCCCceE-EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 429 KGDRIAF-VE-FPGVYVVNSDGSNRR-QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 429 DG~~la~-~~-~~~l~v~d~~~g~~~-~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
+++.+++ .+ ++.|.+||+...+.. .+. ...+..++|+|||++|+..+ .++.+.||++....
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-------~D~~i~iwd~~~~~---- 329 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-------QKSEIRVYSASQWD---- 329 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-------SSSCEEEEESSSSS----
T ss_pred CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-------CCCEEEEEECCCCc----
Confidence 9975544 43 788999999765532 111 34678899999999999886 57899999876543
Q ss_pred cceEEcccCC------CCCcceEEccCCCEEEEEEeeCC---------ceeEEEEECCCCcccceEECc-CCCcCceee-
Q 004971 501 SAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTRTG---------YKNLYIMDAEGGEGYGLHRLT-EGPWSDTMC- 563 (721)
Q Consensus 501 ~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~~g---------~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~- 563 (721)
....+..+. .......|+|++..+++....++ ...|++||..+|+. +..+. .+...+..+
T Consensus 330 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~ 406 (435)
T 4e54_B 330 -CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSLN 406 (435)
T ss_dssp -SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCEE
T ss_pred -cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEEE
Confidence 333333322 12345689999998887754321 34699999999885 44544 333344554
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
+|||||+.|+.+. +. .|++|++..++.++
T Consensus 407 ~fspdg~~lasg~-d~-------~i~iW~~~~gk~rK 435 (435)
T 4e54_B 407 EFNPMGDTLASAM-GY-------HILIWSQQEARTRK 435 (435)
T ss_dssp EECTTSSCEEEEC-SS-------EEEECCCC------
T ss_pred EECCCCCEEEEEc-CC-------cEEEEECCcCeeeC
Confidence 7999999888765 32 79999999887653
No 116
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=1.1e-15 Score=175.35 Aligned_cols=304 Identities=9% Similarity=0.038 Sum_probs=198.1
Q ss_pred eeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCC
Q 004971 273 CWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTS 344 (721)
Q Consensus 273 ~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~ 344 (721)
..++||+ ++|.+.........||+....++ ..++++.. ...+..++||| ||++|+|.....|+
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~ 144 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESG--------QEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAA 144 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTS--------CCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTC
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCC--------CcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCC
Confidence 3446765 66654433233567886654432 44555442 22467889999 99999999888888
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CCCCcceeEEEeccCCCCc--ceecc
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----REDGNNQLLLENIKSPLPD--ISLFR 418 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~--~~~~~ 418 (721)
+...|++||+++++....... .......++|||||+.|+|.+.+.... ......+++++++.++... +....
T Consensus 145 ~~~~i~v~dl~tg~~~~~~~~--~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 145 DEAVLHVIDVDSGEWSKVDVI--EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp SCCEEEEEETTTCCBCSSCCB--SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred ceEEEEEEECCCCCCcCCccc--CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence 788999999999974311111 122236799999999999988754310 0011256888888766421 21111
Q ss_pred ----cCCCCceeCcCCCEEEEEe-CC----cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 419 ----FDGSFPSFSPKGDRIAFVE-FP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 419 ----~~~~~~~~SpDG~~la~~~-~~----~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
.....+.|||||++|++.. .. .|++++..+++.+.+. ......+.| ++|+ +++.++. .....
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~-----~~~~~ 295 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDE-----GAPRQ 295 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECT-----TCTTC
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECC-----CCCCC
Confidence 1123578999999999883 33 7999988777877777 234455666 7888 8777641 23456
Q ss_pred EEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeE
Q 004971 488 DIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCN 564 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~ 564 (721)
.|+.++.++.. ....+.+..+. .....++|+ +.+|++....++..+|+++++.++. ...+... ...+..++
T Consensus 296 ~l~~~d~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 296 RVFEVDPAKPA-RASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP---VRTVQLPGVGAASNLM 369 (695)
T ss_dssp EEEEEBTTBCS-GGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE---EEECCCSSSSEECCCB
T ss_pred EEEEEeCCCCC-ccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe---eEEecCCCCeEEEEee
Confidence 77777775530 01124554432 234556776 5677777777778899999987554 5556533 44456788
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
++||++.|++..... .....||+||+.+++.+.+..
T Consensus 370 ~s~d~~~l~~~~ss~---~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 370 GLEDLDDAYYVFTSF---TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp SCTTCSEEEEEEEET---TEEEEEEEEETTTCCEEEEEE
T ss_pred cCCCCCEEEEEEcCC---CCCCEEEEEECCCCcEEEEec
Confidence 999999999877653 345689999999988766654
No 117
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=1e-15 Score=160.96 Aligned_cols=279 Identities=10% Similarity=0.053 Sum_probs=165.3
Q ss_pred CCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEEC--CCCceEEeecc
Q 004971 289 DDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDL--VKNKFIELTRF 365 (721)
Q Consensus 289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl--~tg~~~~l~~~ 365 (721)
++.+.+|.++...+ +...+.. .......++||| ||++|++..... .....|.+|++ ++++.+.+...
T Consensus 26 ~~~i~~~~~d~~~g--------~~~~~~~~~~~~p~~l~~sp-dg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~ 95 (361)
T 3scy_A 26 SKGIYTFRFNEETG--------ESLPLSDAEVANPSYLIPSA-DGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQ 95 (361)
T ss_dssp CCEEEEEEEETTTC--------CEEEEEEEECSCCCSEEECT-TSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEeCCCC--------CEEEeecccCCCCceEEECC-CCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEe
Confidence 45566775544332 2222211 333456789999 999888865431 12234666655 44666565543
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCccee---ccc-----------CCCCceeCcC
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISL---FRF-----------DGSFPSFSPK 429 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~---~~~-----------~~~~~~~SpD 429 (721)
.........+++ ||++|++..... ..+.++++... ...+.. ... ....++|+||
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~--------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSG--------GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTT--------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCC--------CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 323334444555 899888765433 24555555422 111110 000 0123799999
Q ss_pred CCEEEEEe--CCcEEEEECCCCc-------eE------EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 430 GDRIAFVE--FPGVYVVNSDGSN-------RR------QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 430 G~~la~~~--~~~l~v~d~~~g~-------~~------~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
|++|++.. ...+++|+++... .. .+. ...+..++|+|||++|++... .++.+.+|+
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~~ 239 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE------IGGTVIAFR 239 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------TTCEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC------CCCeEEEEE
Confidence 99988874 5678899876432 21 122 234668999999999998863 467888888
Q ss_pred EEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEc
Q 004971 492 INVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~S 566 (721)
++... ......+.... .....++|||||++|++.... +...|.+|++ .+++...+..+.. ......++||
T Consensus 240 ~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 240 YADGM---LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EETTE---EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred ecCCc---eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 87321 01122222211 234578999999998876653 1245666665 4666433444433 3345689999
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
|||++|+++.... +...+|.+|..+++.+.+.
T Consensus 315 pdg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 315 PNGKYLLVACRDT----NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp TTSCEEEEEETTT----TEEEEEEECTTTCCEEECS
T ss_pred CCCCEEEEEECCC----CCEEEEEEECCCCcEeecc
Confidence 9999999888653 4456666888888876654
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.9e-16 Score=168.65 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=163.0
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCCCc--ce--ecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPLPD--IS--LFRFDGSFPSFSPKGDRIAFVE-FPGVYV 443 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~--~~--~~~~~~~~~~~SpDG~~la~~~-~~~l~v 443 (721)
.+..++|+|||+.|+++....+ .+.++++. .+... +. ........++|+|||++|++.+ ++.+++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK--------SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT--------EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCC--------eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 4677899999999855443332 35555555 33211 11 1122344689999999999885 678999
Q ss_pred EECCCCceE-----EEe--ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-cccCCCC
Q 004971 444 VNSDGSNRR-----QVY--FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-LTTNGKN 512 (721)
Q Consensus 444 ~d~~~g~~~-----~l~--~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~~~~ 512 (721)
|++.++... .+. ...+..+.|+|| +++|+.++ .++.+.||++.... .... +..+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-------~d~~i~vwd~~~~~-----~~~~~~~~h~~~ 243 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-------RDEHIKISHYPQCF-----IVDKWLFGHKHF 243 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-------TTSCEEEEEESCTT-----CEEEECCCCSSC
T ss_pred EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-------CCCcEEEEECCCCc-----eeeeeecCCCCc
Confidence 999876643 222 456789999999 88888876 56899999986543 3444 4456677
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-------------------------CCCcCceeeEEcc
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-------------------------EGPWSDTMCNWSP 567 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-------------------------~~~~~~~~~~~Sp 567 (721)
+..++|+ ||++|+..+. +..|++||+.+++. +..+. .....+..++|+|
T Consensus 244 v~~~~~s-d~~~l~s~~~---d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGG---DDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp EEEEEEC-STTEEEEEES---SSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred eEEEEEC-CCCEEEEEeC---CCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 8889999 9999998886 78999999998875 33332 1123457889999
Q ss_pred CCCEEEEEE-ccCCCCCCceeEEEEec--CCC---ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 568 DGEWIAFAS-DRDNPGSGSFEMYLIHP--NGT---GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 568 DG~~l~~~~-~~~~~~~~~~~i~~~d~--~~~---~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
||+.|+++. .+. .|++|++ ..+ +...... ....+..++|+|++ .++....... +. .
T Consensus 318 ~~~~l~~~~~~d~-------~i~iw~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~~~-~~v~~~~~~~-~~-------~ 379 (450)
T 2vdu_B 318 NLPFVAFFVEATK-------CIIILEMSEKQKGDLALKQIIT--FPYNVISLSAHNDE-FQVTLDNKES-SG-------V 379 (450)
T ss_dssp SSSEEEEEETTCS-------EEEEEEECSSSTTCEEEEEEEE--CSSCEEEEEEETTE-EEEEECCTTC-CS-------S
T ss_pred CCCEEEEEECCCC-------eEEEEEeccCCCCceeeccEec--cCCceEEEEecCCc-EEEEEecccC-CC-------C
Confidence 999999988 443 8999998 444 2222222 23677889999953 3333333211 00 0
Q ss_pred CCCCccEEEEEcCCCCeEEec
Q 004971 642 YQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~~~lt 662 (721)
....-+||.++.++++.+ ++
T Consensus 380 ~~~~i~v~~~~~~~~~~~-~~ 399 (450)
T 2vdu_B 380 QKNFAKFIEYNLNENSFV-VN 399 (450)
T ss_dssp CCCSEEEEEEETTTTEEE-EC
T ss_pred CCcceEEEEEEcCCCeEE-Ec
Confidence 000115777777776653 55
No 119
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.74 E-value=2.1e-16 Score=165.30 Aligned_cols=285 Identities=10% Similarity=0.018 Sum_probs=186.3
Q ss_pred cceeccCCe-EEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC---CCEEEEEEecCCC
Q 004971 271 WPCWVDEST-LFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN---NKFIAVATRRPTS 344 (721)
Q Consensus 271 ~~~ws~dg~-l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d---G~~la~~~~~~g~ 344 (721)
..+|+|++. ++++ ... .++.+.+|.+..... .......+...+..++|+| + |++|+...
T Consensus 23 ~~~~~p~~~~l~~~-~s~~~~d~~v~iw~~~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~----- 87 (357)
T 3i2n_A 23 DCKWVPCSAKFVTM-GNFARGTGVIQLYEIQHGDL--------KLLREIEKAKPIKCGTFGA-TSLQQRYLATGD----- 87 (357)
T ss_dssp EEEECTTSSEEEEE-EC--CCCEEEEEEEECSSSE--------EEEEEEEESSCEEEEECTT-CCTTTCCEEEEE-----
T ss_pred EEEEcCCCceEEEe-cCccCCCcEEEEEeCCCCcc--------cceeeecccCcEEEEEEcC-CCCCCceEEEec-----
Confidence 448999985 4443 222 378889996643321 1122224455678899999 8 68887754
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCc------EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNP------FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR 418 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~------~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 418 (721)
.+..|.+||+.+++. .+.....+...+..+ +|+|+++.|+....++. +.++++..+...+....
T Consensus 88 ~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~---------i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEM-PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT---------VKVWDPRQKDDPVANME 157 (357)
T ss_dssp TTSCEEEECTTSCSS-CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC---------EEEECTTSCSSCSEEEC
T ss_pred CCCeEEEEeCCCCCc-cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe---------EEEEeCCCCCCcceecc
Confidence 334599999998761 122223445555555 56899999988765554 66667665432222221
Q ss_pred c-------CCCCce----eCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcC---CCCeEEEEecCCCCC
Q 004971 419 F-------DGSFPS----FSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDP---VREAVVYTSGGPEFA 481 (721)
Q Consensus 419 ~-------~~~~~~----~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp---dg~~la~~~~~~~~~ 481 (721)
. ....+. |+|+++.|+... ++.|.+||+.+++..... ...+..+.|+| +++.|+..+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------ 231 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS------ 231 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE------
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC------
Confidence 1 111223 889999998885 689999999998865444 56788999999 999999886
Q ss_pred CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCccc------------
Q 004971 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGY------------ 548 (721)
Q Consensus 482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~------------ 548 (721)
.++.+.+|++.............+..+...+..++|+|+++ .|+..+. +..|++||+..+...
T Consensus 232 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 232 -LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp -STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred -CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEeecCCCcccccccCCCCcccc
Confidence 57899999987643200001112235666788899999999 5665555 668999998755321
Q ss_pred -----ceEECcCCCcCceeeEEccCCCEEEE-EEccCCCCCCceeEEEEecCCCc
Q 004971 549 -----GLHRLTEGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 549 -----~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
.+..+..+...+..++|+|||+.|++ ++.++ .|++||+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~-------~i~iw~~~~~~ 355 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ-------TVRVLIVTKLN 355 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS-------EEEEEEECC--
T ss_pred ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC-------cEEEEECCCcc
Confidence 24445556667789999999999985 55554 89999987643
No 120
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=7.2e-16 Score=178.17 Aligned_cols=300 Identities=11% Similarity=0.106 Sum_probs=194.1
Q ss_pred ccCCe-EEEEeccCCCCcEEEEEEecCC--CcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCC
Q 004971 275 VDEST-LFFHRKSEEDDWISVYKVILPQ--TGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTS 344 (721)
Q Consensus 275 s~dg~-l~~~~~~~~~g~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~ 344 (721)
+|||+ ++|...........||+..... ++ ..+.+.+. ......++||| ||++|+|.....|.
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~lld~~~l~~~~~~~~~~~~~SP-DG~~la~~~~~~G~ 186 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGT-------KGRVLLDPNTWAKDGATALDAWAASD-DGRLLAYSVQDGGS 186 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTC-------CCEEEECGGGCC----EEEEEEEECT-TSSEEEEEEEETTC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCC-------CCEEEECHHHhccCCCEEEEeEEECC-CCCEEEEEEcCCCC
Confidence 36665 5665433322246788665441 22 34443222 12456789999 99999999888777
Q ss_pred CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-----CCCCcceeEEEeccCCCCc-ceecc
Q 004971 345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-----REDGNNQLLLENIKSPLPD-ISLFR 418 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~-~~~~~ 418 (721)
+...|++||+++++....... ......++|||| +.|+|.+.+.... ......+++++++.++... .....
T Consensus 187 e~~~i~v~dl~tg~~~~~~~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLADELK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEE---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred ceEEEEEEECCCCCCCCccCC---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 778899999999986543211 222357999999 9999987654310 0011246888888665321 11111
Q ss_pred c-C----CCCceeCcCCCEEEEEe------CCcEEEEECCCC--c-eEEEee--cCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 419 F-D----GSFPSFSPKGDRIAFVE------FPGVYVVNSDGS--N-RRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 419 ~-~----~~~~~~SpDG~~la~~~------~~~l~v~d~~~g--~-~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
. . ...+.|||||++|++.. ...|+++|++++ + .+.+.. .....+ ++|||++|++.++.
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~----- 336 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD----- 336 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT-----
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC-----
Confidence 1 1 23478999999999883 248999999887 6 667762 233333 56999999999852
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCc
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSD 560 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~ 560 (721)
...+..|+.++.++.. ...+.+..+. .....+.|+ +.+|++....++..+|+++++.++. ...+.. ....+
T Consensus 337 ~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v 409 (741)
T 1yr2_A 337 GAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP---AGAVSLPGIGSA 409 (741)
T ss_dssp TCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE---EEECBCSSSCEE
T ss_pred CCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc---eeeccCCCCeEE
Confidence 2345677777776520 1344554433 222334454 6788888888888899999987554 566653 24455
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
..++++||++.|++..... .....||+||+.+++.+.+.
T Consensus 410 ~~~~~s~d~~~l~~~~ss~---~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 410 SGLSGRPGDRHAYLSFSSF---TQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp EEEECCBTCSCEEEEEEET---TEEEEEEEEETTTTEEEECS
T ss_pred EEeecCCCCCEEEEEEcCC---CCCCEEEEEECCCCcEEEEe
Confidence 7789999999888876543 35568999999998765553
No 121
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-17 Score=179.09 Aligned_cols=314 Identities=12% Similarity=0.069 Sum_probs=185.9
Q ss_pred ccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC------CCEEEEEEecCCCCeee
Q 004971 275 VDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN------NKFIAVATRRPTSSYRH 348 (721)
Q Consensus 275 s~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d------G~~la~~~~~~g~~~~~ 348 (721)
+|+++++.+ ...++.+.||.+....... .....+..+...+..++|+| + +..|+..+ .++.
T Consensus 170 ~~~~~~laS--~s~D~tI~iWd~~~~~~~~-----~~~~~l~~~~~~V~~v~wsp-~~~~~~~~~~LAs~s-----~Dgt 236 (524)
T 2j04_B 170 NEHLEMFDK--EKHSSCIQIFKMNTSTLHC-----VKVQTIVHSFGEVWDLKWHE-GCHAPHLVGCLSFVS-----QEGT 236 (524)
T ss_dssp --------------CEEEEEEEEETTTCCE-----EEEEEEEECCCSEEEEEECS-SCCCSSSSCEEEEEE-----TTSC
T ss_pred chhhhhhcc--CCCCceEEEEEccCCCCCc-----eEEEEEEecCCcEEEEEECC-CCCCCCCCceEEEEe-----cCCe
Confidence 567676652 3447889999764332100 00111233334567889998 7 46777654 3456
Q ss_pred EEEEECCCCceE---------EeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce---e
Q 004971 349 IELFDLVKNKFI---------ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---L 416 (721)
Q Consensus 349 l~l~dl~tg~~~---------~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~ 416 (721)
|++||+.+++.. .......+...+..++|++++ .|+..+.++. +.++++..+..... .
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt---------V~lWD~~~~~~~~~~~~~ 306 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF---------VAEFDLTDPEVPSFYDQV 306 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE---------EEEEETTBCSSCSEEEEC
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE---------EEEEECCCCCCceEEeec
Confidence 999999876421 011223455677889999875 6766554443 66677764422222 1
Q ss_pred cccCCCCc--eeCcCC-CEEEEEe-CCcEEEEECCCCce-EEEe---e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 417 FRFDGSFP--SFSPKG-DRIAFVE-FPGVYVVNSDGSNR-RQVY---F-KNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 417 ~~~~~~~~--~~SpDG-~~la~~~-~~~l~v~d~~~g~~-~~l~---~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
....+..+ .|+|+| +.|+.++ ++.|.+||+.+++. ..+. . ..+..++|+|+++.++..+ .++.+
T Consensus 307 H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-------~d~tv 379 (524)
T 2j04_B 307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-------GASSL 379 (524)
T ss_dssp SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-------SSSEE
T ss_pred ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-------CCCcE
Confidence 22223344 578998 7777775 78899999987653 2222 1 2467899999999988765 46778
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-----CCcCcee
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-----GPWSDTM 562 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-----~~~~~~~ 562 (721)
+||++.... ....+..+...+..++|||||+.|+..+. +..|.+||+..+. +..... ....+..
T Consensus 380 ~lwd~~~~~-----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~---Dgtv~lwd~~~~~---~~~~~~~~~~~~~~~v~~ 448 (524)
T 2j04_B 380 RAVPSRAAF-----AVHPLVSRETTITAIGVSRLHPMVLAGSA---DGSLIITNAARRL---LHGIKNSSATQKSLRLWK 448 (524)
T ss_dssp EEEETTCTT-----CCEEEEECSSCEEEEECCSSCCBCEEEET---TTEEECCBSCSST---TTCC------CCCCEEEE
T ss_pred EEEECcccc-----cceeeecCCCceEEEEeCCCCCeEEEEEC---CCEEEEEechHhh---ccccccCccceeeeEEEE
Confidence 898765432 44567777788899999999999998887 7889999987543 221111 1113457
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC---EEEEEEecCCCcCCCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK---SIVFTSDYGGISAEPISTP 639 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~~~~~ 639 (721)
++|||||+.+.+ .+. ..++.++..+.....+. ++...+..++|+||+. +|+..+.++
T Consensus 449 v~~sp~g~~~~~--~~~------~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g---------- 508 (524)
T 2j04_B 449 WDYSIKDDKYRI--DSS------YEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAG---------- 508 (524)
T ss_dssp CBCCSSSCEEEE--CCC------CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTS----------
T ss_pred eccCCCCCeEEc--cCC------ceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCc----------
Confidence 899999995532 221 13444443343333333 3678899999999964 776655444
Q ss_pred CCCCCCccEEEEEcCCC
Q 004971 640 HQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 640 ~~~~~~~~l~~~d~~~~ 656 (721)
.|.+|++++.
T Consensus 509 -------~vrlw~l~~~ 518 (524)
T 2j04_B 509 -------LLTLEYLSLE 518 (524)
T ss_dssp -------EEEEEECSCC
T ss_pred -------eEEEEEcccc
Confidence 3888888764
No 122
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.74 E-value=1.2e-15 Score=162.90 Aligned_cols=279 Identities=11% Similarity=0.071 Sum_probs=188.4
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC-CCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
..|+++ .++.. . .++.+.+|...... ...... .+...+..++|+| +|++|+.... ++.|.
T Consensus 99 ~~~s~~-~l~~~--~-~d~~v~lw~~~~~~---------~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~-----dg~i~ 159 (401)
T 4aez_A 99 LDWSNL-NVVAV--A-LERNVYVWNADSGS---------VSALAETDESTYVASVKWSH-DGSFLSVGLG-----NGLVD 159 (401)
T ss_dssp EEECTT-SEEEE--E-ETTEEEEEETTTCC---------EEEEEECCTTCCEEEEEECT-TSSEEEEEET-----TSCEE
T ss_pred EeecCC-CEEEE--E-CCCeEEEeeCCCCc---------EeEeeecCCCCCEEEEEECC-CCCEEEEECC-----CCeEE
Confidence 356654 44442 2 26788888543221 222222 2455678899999 9999988543 34599
Q ss_pred EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---cccCCCCceeC
Q 004971 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFS 427 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~S 427 (721)
+||+.+++.. .....+...+..+.| +++.|+....++ .+.++++......+.. .......++|+
T Consensus 160 iwd~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 160 IYDVESQTKL--RTMAGHQARVGCLSW--NRHVLSSGSRSG---------AIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEETTTCCEE--EEECCCSSCEEEEEE--ETTEEEEEETTS---------EEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECcCCeEE--EEecCCCCceEEEEE--CCCEEEEEcCCC---------CEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9999988743 333456667777888 466777655443 3666776533222222 22234457899
Q ss_pred cCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 428 PKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 428 pDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
|||+.|+..+ ++.|.+||+.+++..... ...+..+.|+|++..++++..+ ..++.+.+|++.... ..
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g----s~d~~i~i~d~~~~~-----~~ 297 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG----TMDKQIHFWNAATGA-----RV 297 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC----TTTCEEEEEETTTCC-----EE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC----CCCCEEEEEECCCCC-----EE
Confidence 9999999885 689999999987755433 5678899999999888877521 146788888775432 34
Q ss_pred EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS 583 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 583 (721)
..+. ....+..++|+|+|+.|++.+.. .+..|++||+.+++......+..+...+..++|+|||++|+.++.++
T Consensus 298 ~~~~-~~~~v~~~~~s~~~~~l~~~~g~-~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg---- 371 (401)
T 4aez_A 298 NTVD-AGSQVTSLIWSPHSKEIMSTHGF-PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE---- 371 (401)
T ss_dssp EEEE-CSSCEEEEEECSSSSEEEEEECT-TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS----
T ss_pred EEEe-CCCcEEEEEECCCCCeEEEEeec-CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC----
Confidence 4443 44577889999999999987621 15789999998876433444556667788999999999999988775
Q ss_pred CceeEEEEecCCCceEE
Q 004971 584 GSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 584 ~~~~i~~~d~~~~~~~~ 600 (721)
.|++|++.+++...
T Consensus 372 ---~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 372 ---NLKFWRVYDGDHVK 385 (401)
T ss_dssp ---EEEEEECCC-----
T ss_pred ---cEEEEECCCCcccc
Confidence 89999998876443
No 123
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.73 E-value=1.2e-15 Score=174.73 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=184.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----RE 396 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~ 396 (721)
.+..++||| ||++|+|.....|++...|+++|+++|+....... ......++|| ||+.|+|.+.+.... ..
T Consensus 130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE---EEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC---CceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 455779999 99999999888888888999999999986544211 2224578999 999999988764200 01
Q ss_pred CCcceeEEEeccCCCCc-ceecccC------CCCceeCcCCCEEEEEe-----CCcEEEEECCCC--ceEEEeec-Ccee
Q 004971 397 DGNNQLLLENIKSPLPD-ISLFRFD------GSFPSFSPKGDRIAFVE-----FPGVYVVNSDGS--NRRQVYFK-NAFS 461 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g--~~~~l~~~-~~~~ 461 (721)
....+++++++.++... ....... ...+.|||||++|++.. ...||++|++++ +.+.+... ....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 11256888888765321 1222111 12468999999998872 258999999876 56666622 2222
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
..|+++|++|++.++. +..+..|+.++.++. .....+.+..+..... .|+|+|++|++...+++..+|++++
T Consensus 285 ~~~~~~g~~l~~~t~~-----~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 285 SLVDNKGSTLYLLTNR-----DAPNRRLVTVDAANP-GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EEEEEETTEEEEEECT-----TCTTCEEEEEETTSC-CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred EEEeccCCEEEEEECC-----CCCCCEEEEEeCCCC-CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 3389999999998852 234678888888764 1112356666553433 9999999999999888888999999
Q ss_pred CCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 542 AEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 542 ~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
++++. ...+.. ....+..+.++||++.|++..... .....||.+|+.+++.+.+..
T Consensus 357 ~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~---~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 357 YEGKR---VREVALPGLGSVSGFNGKHDDPALYFGFENY---AQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp TTSCE---EEEECCSSSSEEEECCCCTTCSCEEEEEECS---SSCCEEEEECTTTCCEEEEEC
T ss_pred CCCCe---eEEeecCCCceEEeeecCCCCCEEEEEecCC---CCCCEEEEEECCCCeEEEEEe
Confidence 98765 455543 333456778899999998887653 244589999999988776654
No 124
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.73 E-value=2e-15 Score=164.43 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=202.7
Q ss_pred cCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC
Q 004971 276 DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV 355 (721)
Q Consensus 276 ~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~ 355 (721)
.++.++++ ...++.+.+|.+.... ....+..+...+..++|+| ++ .++... .++.|.+||+.
T Consensus 130 ~~~~~l~s--gs~dg~i~vwd~~~~~---------~~~~~~~h~~~V~~l~~~~-~~-~l~s~s-----~dg~i~vwd~~ 191 (464)
T 3v7d_B 130 FEDNYVIT--GADDKMIRVYDSINKK---------FLLQLSGHDGGVWALKYAH-GG-ILVSGS-----TDRTVRVWDIK 191 (464)
T ss_dssp EETTEEEE--EETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECS-TT-EEEEEE-----TTSCEEEEETT
T ss_pred ECCCEEEE--EcCCCcEEEEECCCCc---------EEEEEeCCCcCEEEEEEcC-CC-EEEEEe-----CCCCEEEEECC
Confidence 34455553 3337899999543222 4555666777788999999 88 565543 34569999999
Q ss_pred CCceEEeecccCCCCcccCcEEc--CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--------------------
Q 004971 356 KNKFIELTRFVSPKTHHLNPFIS--PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-------------------- 413 (721)
Q Consensus 356 tg~~~~l~~~~~~~~~~~~~~~S--pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------- 413 (721)
+++.. .....+...+..+.|+ ++++.|+....++. +.++++......
T Consensus 192 ~~~~~--~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 192 KGCCT--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT---------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TTEEE--EEECCCSSCEEEEEEEESSSCEEEEEEETTSC---------EEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCcEE--EEECCCCCccEEEEEecCCCCCEEEEEcCCCc---------EEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 98743 3334566777777887 57777877665554 455555443211
Q ss_pred --ceec-ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 414 --ISLF-RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 414 --~~~~-~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
+... ........++++++.++..+ ++.|.+||+.+++..... ...+..+.|+|+++.++..+ .++.
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-------~dg~ 333 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-------MDTT 333 (464)
T ss_dssp TEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-------TTSC
T ss_pred EEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-------CCCc
Confidence 0011 11112236688999988885 789999999988754443 45678999999999999886 5788
Q ss_pred EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S 566 (721)
+.+|++.... ....+..+...+..+.|+ +++|+..+. +..|++||+.+++. .... .........+|+
T Consensus 334 i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~--~~~~-~~~~~~~~~~~~ 400 (464)
T 3v7d_B 334 IRIWDLENGE-----LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYSR--KFSY-HHTNLSAITTFY 400 (464)
T ss_dssp EEEEETTTTE-----EEEEECCCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCE--EEEE-ECTTCCCEEEEE
T ss_pred EEEEECCCCc-----EEEEEeCCCCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCce--eeee-cCCCCccEEEEE
Confidence 9999875432 556666666667777776 678888887 78899999998763 2222 233445678999
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
|+++.|+.+. ++ .|++||+.+++........+...+..++|+ ++.++.+..+++
T Consensus 401 ~~~~~l~~~~-dg-------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g 454 (464)
T 3v7d_B 401 VSDNILVSGS-EN-------QFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDG 454 (464)
T ss_dssp ECSSEEEEEE-TT-------EEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETT
T ss_pred eCCCEEEEec-CC-------eEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCC
Confidence 9999988877 43 899999999987654323356677788886 677777776665
No 125
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=1.8e-15 Score=156.77 Aligned_cols=252 Identities=11% Similarity=0.082 Sum_probs=164.0
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---CCCcccCcEEcCCCCEEEEEEeeCCCC-CC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS---PKTHHLNPFISPDSSRVGYHKCRGGST-RE 396 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~---~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~ 396 (721)
....++|+| ||+++++.... +..|++||+.+++......... +......++|+|||++|++........ .+
T Consensus 35 ~~~~~~~s~-dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 35 TPMVPMVAP-GGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp CCCCEEECT-TSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CccceEEcC-CCCEEEEEeCC----CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence 357899999 99988775432 3459999999987543222111 011466789999999998875321000 00
Q ss_pred C--CcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-e-cCceeeEEcCCCCeE
Q 004971 397 D--GNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-F-KNAFSTVWDPVREAV 471 (721)
Q Consensus 397 ~--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~-~~~~~~~~spdg~~l 471 (721)
. ....++++++.++... ..........++|+|||++|++. .+.|++||+.+++..... . .......|+|||+.+
T Consensus 110 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 188 (337)
T 1pby_B 110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred ccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence 0 0145777777654211 11122334567999999988887 678999999988765443 2 223456899999988
Q ss_pred EEEecCCCCCCCCCcE---------------------EEEEEEccCCCCccceEE--cccCCCCCcceEEccCCCEEEEE
Q 004971 472 VYTSGGPEFASESSEV---------------------DIISINVDDVDGVSAVRR--LTTNGKNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~---------------------~i~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~SpDg~~l~~~ 528 (721)
++... ....+ .|+.++..+. +... +.........++|+|||++|++.
T Consensus 189 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 189 WNQHE------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG----EMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp CCCCT------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC----CEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred eeecc------CCCceeeeeeccccccccccccccccceEEEeCCCC----CceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 76542 11211 4666666553 3222 22233345568999999999887
Q ss_pred EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
+..|++||+.+++. +..+..+ .....++|+|||++|+++..+. .|++||+.+++......
T Consensus 259 -----~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~-------~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 259 -----YNVLESFDLEKNAS--IKRVPLP-HSYYSVNVSTDGSTVWLGGALG-------DLAAYDAETLEKKGQVD 318 (337)
T ss_dssp -----ESEEEEEETTTTEE--EEEEECS-SCCCEEEECTTSCEEEEESBSS-------EEEEEETTTCCEEEEEE
T ss_pred -----CCeEEEEECCCCcC--cceecCC-CceeeEEECCCCCEEEEEcCCC-------cEEEEECcCCcEEEEEE
Confidence 25899999998874 3333322 3457899999999998875443 89999999887665543
No 126
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.73 E-value=2.4e-16 Score=167.09 Aligned_cols=277 Identities=14% Similarity=0.080 Sum_probs=181.0
Q ss_pred cceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC--CCCCcccCceeecCCC-CEEEEEEecCCCCe
Q 004971 271 WPCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNN-KFIAVATRRPTSSY 346 (721)
Q Consensus 271 ~~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~ 346 (721)
..+|+|++ +++++. ..++.+.+|.+.... ....+. .+...+..++|+| ++ ++|+... .+
T Consensus 78 ~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~---------~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~-----~d 140 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVG--SKGGDIILWDYDVQN---------KTSFIQGMGPGDAITGMKFNQ-FNTNQLFVSS-----IR 140 (383)
T ss_dssp EEEECSSCTTEEEEE--EBTSCEEEEETTSTT---------CEEEECCCSTTCBEEEEEEET-TEEEEEEEEE-----TT
T ss_pred EEEECCCCCCEEEEE--cCCCeEEEEeCCCcc---------cceeeecCCcCCceeEEEeCC-CCCCEEEEEe-----CC
Confidence 34799998 666642 337899999654332 233332 4566788999999 75 5555532 34
Q ss_pred eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCce
Q 004971 347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPS 425 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 425 (721)
..|.+||+.+.....+.....+...+..++|+|+++.|+....++. +.++++.... ..+.........++
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR---------LLLLGLDGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE---------EEEEETTSCEEEEEECSSSCEEEEE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC---------EEEEECCCCEEEEeccCCCcEEEEE
Confidence 5699999997655555443333456788999999999988655443 6666664321 11111223345679
Q ss_pred eCcCCC-EEEEEe-CCcEEEEECCC----CceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 426 FSPKGD-RIAFVE-FPGVYVVNSDG----SNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 426 ~SpDG~-~la~~~-~~~l~v~d~~~----g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
|+|+++ .|+..+ ++.|.+||+.. +...... ...+..+.|+| +|+.|+..+ .++.+.||++....
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~-------~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD-------QRNEIRVYSSYDWS 284 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE-------SSSEEEEEETTBTT
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc-------CCCcEEEEECCCCc
Confidence 999999 666664 77899999986 4433322 56788999999 999999886 46889999876543
Q ss_pred CCCccceEEcccCC------CCCcceEEccCCCEEEEEEee------CCceeEEEEECCCCcccceEECcC--CCcCcee
Q 004971 497 VDGVSAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTR------TGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTM 562 (721)
Q Consensus 497 ~~~~~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~------~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~ 562 (721)
....+..+. .......|+|++..+++.... ..+..|++||+.+++. +..+.. +...+..
T Consensus 285 -----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~ 357 (383)
T 3ei3_B 285 -----KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISL 357 (383)
T ss_dssp -----SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCE
T ss_pred -----cccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce--eeeecCCCCCceEEE
Confidence 222222211 112224666666666544321 1367899999998885 555554 2344556
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
++|+|||+.|+.++ ++ .|++||+++
T Consensus 358 ~~~s~~g~~l~s~s-d~-------~i~iw~~~~ 382 (383)
T 3ei3_B 358 NKFSPTGDVLASGM-GF-------NILIWNRED 382 (383)
T ss_dssp EEECTTSSEEEEEE-TT-------EEEEEECC-
T ss_pred EEEecCccEEEEec-CC-------cEEEEecCC
Confidence 79999999998886 54 899999864
No 127
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.4e-17 Score=179.78 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=175.7
Q ss_pred CCeeeEEEEECCCCceEE--eecccCCCCcccCcEEcCC------CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--
Q 004971 344 SSYRHIELFDLVKNKFIE--LTRFVSPKTHHLNPFISPD------SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-- 413 (721)
Q Consensus 344 ~~~~~l~l~dl~tg~~~~--l~~~~~~~~~~~~~~~Spd------g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 413 (721)
+.+..|.+||+.+++... ......+...+..++|+|+ ++.|+..+.++. +.++++..+...
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt---------vrlWd~~~~~~~~~ 250 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT---------INFLEIIDNATDVH 250 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC---------EEEEECCCCSSSSS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe---------EEEEEcCCCccccc
Confidence 456789999998876321 1112234556778999997 568887766655 444555433110
Q ss_pred -----------ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-e-EEEe--ecCceee--EEcCCC-CeEEEE
Q 004971 414 -----------ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-R-RQVY--FKNAFST--VWDPVR-EAVVYT 474 (721)
Q Consensus 414 -----------~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~-~~l~--~~~~~~~--~~spdg-~~la~~ 474 (721)
+.........++|++++ .|+..+ ++.|.+||+.++. + ..+. ...+..+ .|+|+| +.|+.+
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 11111223457888875 677664 7899999998664 3 2233 4567777 678998 777777
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~ 552 (721)
+ .++.++||++.... ....+..+. ..+..++|+||++.|+..+. +..|.+||+.++.. +..
T Consensus 330 S-------~D~tvklWD~~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~~--~~~ 392 (524)
T 2j04_B 330 A-------VDGYFYIFNPKDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---ASSLRAVPSRAAFA--VHP 392 (524)
T ss_dssp E-------TTSEEEEECGGGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECS---SSEEEEEETTCTTC--CEE
T ss_pred c-------cCCeEEEEECCCCC-----cccccccccccCcccceEeCCCcCeEEEeCC---CCcEEEEECccccc--cee
Confidence 6 57899999975432 222232222 23567999999999887765 66899999998774 456
Q ss_pred CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec---CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS---GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+..+...+..++|||||+.|+.++.++ .|.+||+..+........ .....+..++|||||+.+.+ .+
T Consensus 393 l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-------tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~- 462 (524)
T 2j04_B 393 LVSRETTITAIGVSRLHPMVLAGSADG-------SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS- 462 (524)
T ss_dssp EEECSSCEEEEECCSSCCBCEEEETTT-------EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CC-
T ss_pred eecCCCceEEEEeCCCCCeEEEEECCC-------EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cC-
Confidence 667777889999999999999988875 899999866422111000 00112457889999995532 22
Q ss_pred CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971 630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~ 676 (721)
.. .++.++.++.....|..+...+...+|+|+
T Consensus 463 ~~---------------~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 463 SY---------------EVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp CC---------------CCCC-------------CCCSCCCEEECCS
T ss_pred Cc---------------eecccccCCcceeeecCCCceEEEEECCCC
Confidence 21 244444456667788888888999999997
No 128
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.72 E-value=2.8e-16 Score=165.53 Aligned_cols=239 Identities=11% Similarity=0.036 Sum_probs=174.2
Q ss_pred CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC----CcceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971 368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL----PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVY 442 (721)
Q Consensus 368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~ 442 (721)
+...+..++|+|||+.|++...++ .+.++++.... ..+.........++|+|+|+.|+..+ ++.|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNH---------EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSS---------EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCC---------EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEE
Confidence 355677899999999998865443 35566655442 11111223344679999999998885 68899
Q ss_pred EEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-ccCCCCCcce
Q 004971 443 VVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-TTNGKNNAFP 516 (721)
Q Consensus 443 v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 516 (721)
+||+.+++..... ...+..+.|+|+++.|++.+ .++.+.+|+++.... ......+ ..+...+..+
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-------GSRVISICYFEQEND--WWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-------TTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEE
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-------CCCEEEEEEecCCCc--ceeeeeeecccCCCeeEE
Confidence 9999888643322 45678999999999999987 568899999987542 0012222 3345677889
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECC------------------CCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAE------------------GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~------------------~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
+|+||+++|+..+. +..|++||+. .++. +..+..+...+..+.|+|||+.|+.+..+
T Consensus 149 ~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 149 DWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEcCCCCEEEEEcC---CCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 99999999998886 7789999954 3443 55566666677899999999999999877
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+ .|++||+.+++....... +...+..++|+|||++|+.. .++ .|++|++..
T Consensus 224 ~-------~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~-----------------~i~i~~~~~ 274 (372)
T 1k8k_C 224 S-------TVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDC-----------------FPVLFTYDS 274 (372)
T ss_dssp T-------EEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTS-----------------SCEEEEEET
T ss_pred C-------EEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCC-----------------eEEEEEccC
Confidence 5 899999988876655543 56678899999999977654 333 377888766
No 129
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.72 E-value=8.2e-16 Score=163.66 Aligned_cols=279 Identities=10% Similarity=0.024 Sum_probs=187.2
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC----C---CEEEEEEecCCC
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN----N---KFIAVATRRPTS 344 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d----G---~~la~~~~~~g~ 344 (721)
.+|+| +++++ ...++.+.+|.+...... ........+..+...+..++|+| + | ++|+....
T Consensus 22 ~~~~~--~~l~s--~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~---- 89 (397)
T 1sq9_A 22 VSACN--SFTVS--CSGDGYLKVWDNKLLDNE---NPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSF---- 89 (397)
T ss_dssp EEECS--SEEEE--EETTSEEEEEESBCCTTC---CGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEET----
T ss_pred EEecC--CeEEE--EcCCCEEEEEECCCcccc---cCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcC----
Confidence 46777 34442 233788999965433200 00012455556666788999999 9 8 88877542
Q ss_pred CeeeEEEEECCCCce---EEeecccCC-----CCcccCcEEc----CCCCE-EEEEEeeCCCCCCCCcceeEEEeccC--
Q 004971 345 SYRHIELFDLVKNKF---IELTRFVSP-----KTHHLNPFIS----PDSSR-VGYHKCRGGSTREDGNNQLLLENIKS-- 409 (721)
Q Consensus 345 ~~~~l~l~dl~tg~~---~~l~~~~~~-----~~~~~~~~~S----pdg~~-l~~~~~~~~~~~~~~~~~l~~~~~~~-- 409 (721)
+..|++||+.+++. ..+.....+ ...+..+.|+ |+++. |+....++. +.++++..
T Consensus 90 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~---------i~iwd~~~~~ 159 (397)
T 1sq9_A 90 -SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT---------TYIWKFHPFA 159 (397)
T ss_dssp -TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC---------EEEEEEESSS
T ss_pred -CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc---------EEEEeCCccc
Confidence 34599999988762 002222233 3667889999 99999 877665544 45555544
Q ss_pred ----C--CC-----cce-------ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---------ecCcee
Q 004971 410 ----P--LP-----DIS-------LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---------FKNAFS 461 (721)
Q Consensus 410 ----~--~~-----~~~-------~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---------~~~~~~ 461 (721)
. .. .+. ........++|+|+| .|+... ++.|.+||+.+++..... ...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 2 11 111 013334567999999 777774 788999999887754332 235678
Q ss_pred eEEcCCCCeEEEEecCCCCCCCC---CcEEEEEEEccCCCCccceEEccc-------------CCCCCcceEEccCCCEE
Q 004971 462 TVWDPVREAVVYTSGGPEFASES---SEVDIISINVDDVDGVSAVRRLTT-------------NGKNNAFPSVSPDGKWI 525 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~SpDg~~l 525 (721)
+.|+|+++.|+..+ .+ +.+.+|++.... ....+.. +...+..++|+|||++|
T Consensus 239 i~~~~~~~~l~~~~-------~d~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 239 VKFSPQGSLLAIAH-------DSNSFGCITLYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp EEECSSTTEEEEEE-------EETTEEEEEEEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred EEECCCCCEEEEEe-------cCCCCceEEEEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 99999999999886 34 677777765432 4555655 56677889999999999
Q ss_pred EEEEeeCCceeEEEEECCCCcccceEECc------CC---------------CcCceeeEEccCC----------CEEEE
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLT------EG---------------PWSDTMCNWSPDG----------EWIAF 574 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~------~~---------------~~~~~~~~~SpDG----------~~l~~ 574 (721)
+..+. +..|++||+.+++. +..+. .+ ...+..++|+||| +.|+.
T Consensus 307 ~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 307 CSAGW---DGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp EEEET---TSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred EEEeC---CCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 98886 78999999998875 55555 44 5667899999999 68888
Q ss_pred EEccCCCCCCceeEEEEecCCCc
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
++.++ .|.+|++.+|+
T Consensus 382 ~~~dg-------~i~iw~~~~g~ 397 (397)
T 1sq9_A 382 VCLDR-------SIRWFREAGGK 397 (397)
T ss_dssp EETTT-------EEEEEEEEC--
T ss_pred ecCCC-------cEEEEEcCCCC
Confidence 88775 89999988763
No 130
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.72 E-value=2.4e-16 Score=165.48 Aligned_cols=279 Identities=10% Similarity=0.034 Sum_probs=186.5
Q ss_pred EEeCCCCCcccCceeecCC---CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971 313 QRVTPPGLHAFTPATSPGN---NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKC 389 (721)
Q Consensus 313 ~~~~~~~~~~~~~~~sp~d---G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~ 389 (721)
..+..+...+..++|+| + |++|+... .++.|.+||+.+...........+...+..++|+|+++.|+....
T Consensus 33 ~~~~~h~~~v~~~~~~~-~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSP-PTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp ECSSCCSSCEEEEEECC-TTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred EeccCCCCceEEEEEcC-CCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 33445666788999999 8 58887754 345699999987332222333456777889999999999998665
Q ss_pred eCCCCCCCCcceeEEEeccCCCC-cceecccCCCCcee--CcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeE
Q 004971 390 RGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSF--SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTV 463 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~--SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~ 463 (721)
++. +.++++..... .+.........+.| +|+++.|+..+ ++.|.+||+.+++..... ...+..+.
T Consensus 107 dg~---------v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 107 DKT---------AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp TSE---------EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred CCc---------EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 443 66667655421 11222233445788 99998888875 788999999887754333 23333444
Q ss_pred EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCE----EEEEEeeCCceeEE
Q 004971 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKW----IVFRSTRTGYKNLY 538 (721)
Q Consensus 464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~----l~~~s~~~g~~~l~ 538 (721)
+. ...+++.. .++.+.+|.+..... ....+.... .......+.+++.. ++..+. +..|.
T Consensus 178 ~~--~~~~~~~~-------~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~ 241 (368)
T 3mmy_A 178 VI--YPMAVVAT-------AERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI---EGRVA 241 (368)
T ss_dssp EE--TTEEEEEE-------GGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET---TSEEE
T ss_pred ec--CCeeEEEe-------CCCcEEEEEeccccc----hhhhccccccCCCceEEEcccCCCCCCeEEEecC---CCcEE
Confidence 44 44666654 457788888765432 223332221 23344555555544 777666 77899
Q ss_pred EEECCCCcc-cceEECcCCCc------------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC
Q 004971 539 IMDAEGGEG-YGLHRLTEGPW------------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605 (721)
Q Consensus 539 ~~d~~~g~~-~~~~~l~~~~~------------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 605 (721)
+|++..... .....+..+.. .+..++|+|||++|+.++.++ .|++||+.+++.......
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~- 313 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-------RFSFWDKDARTKLKTSEQ- 313 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-------CEEEEETTTTEEEEECCC-
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-------eEEEEECCCCcEEEEecC-
Confidence 999987642 22333333322 478899999999999998875 799999998876655443
Q ss_pred CCCCcCCeEECCCCCEEEEEEecCC
Q 004971 606 SAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 606 ~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
+...+..++|+|||++|+..+.++.
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCS
T ss_pred CCCCceEEEECCCCCeEEEEecccc
Confidence 6778899999999999999887653
No 131
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.72 E-value=2e-15 Score=164.48 Aligned_cols=292 Identities=10% Similarity=-0.006 Sum_probs=204.5
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
++++ ++++|+... .++.|.+||+.+++. +.....+...+..++|+|++ .|+..+.++. +.++
T Consensus 127 ~~~~-~~~~l~sgs-----~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~---------i~vw 188 (464)
T 3v7d_B 127 CLQF-EDNYVITGA-----DDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG-ILVSGSTDRT---------VRVW 188 (464)
T ss_dssp EEEE-ETTEEEEEE-----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSTT-EEEEEETTSC---------EEEE
T ss_pred EEEE-CCCEEEEEc-----CCCcEEEEECCCCcE--EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC---------EEEE
Confidence 4566 788887754 345699999999874 34445677888899999998 6666554444 5666
Q ss_pred eccCCCCccee--cccCCCCceeC--cCCCEEEEEe-CCcEEEEECCCCceEE------------------------Eee
Q 004971 406 NIKSPLPDISL--FRFDGSFPSFS--PKGDRIAFVE-FPGVYVVNSDGSNRRQ------------------------VYF 456 (721)
Q Consensus 406 ~~~~~~~~~~~--~~~~~~~~~~S--pDG~~la~~~-~~~l~v~d~~~g~~~~------------------------l~~ 456 (721)
++..+...... .......+.|+ ++++.++..+ ++.|.+||+.++.... +..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 66544211111 11222335666 6777777774 7899999998765321 112
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCcee
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~ 536 (721)
....-..++++++.++..+ .++.+.+|++.... ....+..+...+..++|+||+++|+..+. +..
T Consensus 269 ~~~~v~~~~~~~~~l~~~~-------~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~ 333 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGS-------YDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASM---DTT 333 (464)
T ss_dssp CSSCEEEEEEETTEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEET---TSC
T ss_pred ccceEEEEcCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCc
Confidence 2223345688999999886 56889999875432 45566666677888999999999998887 788
Q ss_pred EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616 (721)
Q Consensus 537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S 616 (721)
|++||+.+++. +..+..+...+..+.|+ +++|+.++.++ .|.+||+.+++...... +........|+
T Consensus 334 i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~--~~~~~~~~~~~ 400 (464)
T 3v7d_B 334 IRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADG-------SIRGWDANDYSRKFSYH--HTNLSAITTFY 400 (464)
T ss_dssp EEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTS-------EEEEEETTTCCEEEEEE--CTTCCCEEEEE
T ss_pred EEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCC-------cEEEEECCCCceeeeec--CCCCccEEEEE
Confidence 99999998875 66666666677788887 57888888875 89999998876544433 45566778999
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE--eccCCCCCCCceecCCcCCcc
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR--LTQNSFEDGTPAWGPRFIRPV 681 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--lt~~~~~~~~~~~sp~~l~~~ 681 (721)
|+|++|+..+ ++ .|++||+.+++... +..+...+...+|+...+..+
T Consensus 401 ~~~~~l~~~~-dg-----------------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~ 449 (464)
T 3v7d_B 401 VSDNILVSGS-EN-----------------QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA 449 (464)
T ss_dssp ECSSEEEEEE-TT-----------------EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEE
T ss_pred eCCCEEEEec-CC-----------------eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEE
Confidence 9999888766 33 49999999987754 444555567778876654443
No 132
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.72 E-value=1e-15 Score=175.80 Aligned_cols=275 Identities=16% Similarity=0.094 Sum_probs=188.4
Q ss_pred cceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971 271 WPCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 271 ~~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l 349 (721)
..+|++++ .++++ ...++.+.+|++....... ......+..|...+..++|+| ||++|+..+ .+..|
T Consensus 387 ~v~~~~~~~~~l~s--~s~D~~i~~W~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs-----~Dg~v 454 (694)
T 3dm0_A 387 AIATPIDNADIIVS--ASRDKSIILWKLTKDDKAY----GVAQRRLTGHSHFVEDVVLSS-DGQFALSGS-----WDGEL 454 (694)
T ss_dssp EEECCTTCCSEEEE--EETTSEEEEEECCCSTTCS----CEEEEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEE
T ss_pred EEEecCCCCCEEEE--EeCCCcEEEEEccCCCccc----ccccceecCCCCcEEEEEECC-CCCEEEEEe-----CCCcE
Confidence 34788775 56664 3347999999765432110 002345667777788999999 999988754 44569
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-----ecccCCCCc
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-----LFRFDGSFP 424 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 424 (721)
++||+.+++.. .....|...+..++|+|+++.|+..+.++. +.+++......... ........+
T Consensus 455 ~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~---------i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 455 RLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRT---------IKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSC---------EEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred EEEECCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCCCE---------EEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 99999988743 334567778889999999999998776665 44444432211000 011123347
Q ss_pred eeCcCC--CEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 425 SFSPKG--DRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 425 ~~SpDG--~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
+|+|++ ..|+..+ ++.|.+||+.+++..... .+.+..++|+|||+.|+..+ .++.++||++....
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-------~Dg~i~iwd~~~~~-- 594 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-------KDGVVLLWDLAEGK-- 594 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSBCEEEETTTTE--
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCc--
Confidence 899987 3566654 789999999988765443 45688999999999999886 57899999875432
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------------------CcC
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------------------PWS 559 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------------------~~~ 559 (721)
....+. ....+..++|+||+..|+... +..|++||+.+++. +..+... ...
T Consensus 595 ---~~~~~~-~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 595 ---KLYSLE-ANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSI--VEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp ---EEECCB-CSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEE--EEEECCCCC----------------CCCC
T ss_pred ---eEEEec-CCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCC--hhhhccccccccccccccccccCCceeEE
Confidence 233332 234567789999999888765 45699999998764 3322211 112
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+..++|||||++|+.++.++ .|++|++.
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg-------~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDG-------VIRVWGIG 692 (694)
T ss_dssp EEEEEECTTSSEEEEEETTS-------EEEEEEC-
T ss_pred eeeEEEcCCCCEEEEEcCCC-------eEEEEecc
Confidence 46789999999999999886 89999974
No 133
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.71 E-value=1.1e-15 Score=165.34 Aligned_cols=279 Identities=9% Similarity=0.025 Sum_probs=180.7
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcc--eeccccceEEeCCCC------------CcccCceeecCCC--CE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGL--VSTESVSIQRVTPPG------------LHAFTPATSPGNN--KF 334 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~sp~dG--~~ 334 (721)
..+|+|||+++++ ...++.+.+|.+....... ..........+..+. ..+..++|+| ++ ..
T Consensus 33 ~v~~s~~g~~la~--g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~ 109 (447)
T 3dw8_B 33 TVEFNHSGELLAT--GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQ 109 (447)
T ss_dssp EEEECSSSSEEEE--EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSE
T ss_pred EEEECCCCCEEEE--EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-CCCcce
Confidence 3489999987664 3347899999765432100 000000123344454 5578899999 98 67
Q ss_pred EEEEEecCCCCeeeEEEEECCCCceEEe--------------------------------------ecccCCCCcccCcE
Q 004971 335 IAVATRRPTSSYRHIELFDLVKNKFIEL--------------------------------------TRFVSPKTHHLNPF 376 (721)
Q Consensus 335 la~~~~~~g~~~~~l~l~dl~tg~~~~l--------------------------------------~~~~~~~~~~~~~~ 376 (721)
++... .+..|++||+.+++.... .....+...+..++
T Consensus 110 l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 110 FLLST-----NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp EEEEE-----CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred EEEeC-----CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 77653 345599999876543100 11234566788899
Q ss_pred EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc----------ceecccCCCCceeCcCC-CEEEEEe-CCcEEEE
Q 004971 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD----------ISLFRFDGSFPSFSPKG-DRIAFVE-FPGVYVV 444 (721)
Q Consensus 377 ~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~SpDG-~~la~~~-~~~l~v~ 444 (721)
|+|+|+.|+.. .++ .+.++++...... +.........++|+|+| +.|+..+ ++.|.+|
T Consensus 185 ~~~~~~~l~s~-~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 185 INSDYETYLSA-DDL---------RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp ECTTSSEEEEE-CSS---------EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EcCCCCEEEEe-CCC---------eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 99999998875 322 3566665522111 11122234467999999 8888875 7889999
Q ss_pred ECCCCce-----EEEe--ec------------CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 445 NSDGSNR-----RQVY--FK------------NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 445 d~~~g~~-----~~l~--~~------------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
|+.+++. ..+. .. .+..+.|+|+|++|+..+ . +.+.||++...+. ....
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~-~~v~iwd~~~~~~----~~~~ 322 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------Y-LSVKVWDLNMENR----PVET 322 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------S-SEEEEEETTCCSS----CSCC
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------C-CeEEEEeCCCCcc----ccce
Confidence 9988774 4443 22 688999999999999876 4 7889998865332 3333
Q ss_pred cccCCCC---------------CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc----------------
Q 004971 506 LTTNGKN---------------NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---------------- 554 (721)
Q Consensus 506 l~~~~~~---------------~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---------------- 554 (721)
+..+... ...++|+|||++|+..+. +..|++||+.+++. ..+.
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~---dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY---NNFFRMFDRNTKRD---ITLEASRENNKPRTVLKPRK 396 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS---TTEEEEEETTTCCE---EEEECCSTTCCTTCBCCCCC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEecc---CCEEEEEEcCCCcc---eeeeecccccccccccCCcc
Confidence 4333311 123899999999988776 78999999998873 2211
Q ss_pred -----------------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 555 -----------------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 555 -----------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.....+..++|+|+|+.|+++..+ .+|+|..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~--------~~~~~~~ 444 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN--------NLYIFQD 444 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS--------CEEEEEC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc--------eeeeecc
Confidence 111235679999999999988876 5888864
No 134
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.71 E-value=1.7e-15 Score=162.74 Aligned_cols=273 Identities=17% Similarity=0.159 Sum_probs=186.6
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEE---eCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR---VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH 348 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~ 348 (721)
..||+++-+.. .. ++.+.||.+.. + +..+ +..+...+..++|+| ||++|+... .+..
T Consensus 111 l~wS~~n~lAv---gl-d~tV~lWd~~t---g-------~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs-----~Dg~ 170 (420)
T 4gga_A 111 VDWSSGNVLAV---AL-DNSVYLWSASS---G-------DILQLLQMEQPGEYISSVAWIK-EGNYLAVGT-----SSAE 170 (420)
T ss_dssp EEECTTSEEEE---EE-TTEEEEEETTT---C-------CEEEEEECCSTTCCEEEEEECT-TSSEEEEEE-----TTSC
T ss_pred EEECCCCEEEE---Ee-CCEEEEEECCC---C-------CEEEEEEecCCCCcEEEEEECC-CCCEEEEEE-----CCCe
Confidence 48998754433 22 67888885432 1 2222 234455678999999 999998854 3456
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCce
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPS 425 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~ 425 (721)
|.+||+.+++. +.....+...+.. ++.++..|+....+.. +.+++.......+... ........
T Consensus 171 v~iWd~~~~~~--~~~~~~h~~~v~~--~s~~~~~l~sgs~d~~---------i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 171 VQLWDVQQQKR--LRNMTSHSARVGS--LSWNSYILSSGSRSGH---------IHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEETTTTEE--EEEECCCSSCEEE--EEEETTEEEEEETTSE---------EEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCcE--EEEEeCCCCceEE--EeeCCCEEEEEeCCCc---------eeEeeecccceeeEEecccccceeeee
Confidence 99999999874 3334445555544 4556777776554333 4555544433222221 22234468
Q ss_pred eCcCCCEEEEEe-CCcEEEEECCCCce-----EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 426 FSPKGDRIAFVE-FPGVYVVNSDGSNR-----RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 426 ~SpDG~~la~~~-~~~l~v~d~~~g~~-----~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
|+|+|+.++... ++.+.+|+...++. .... ...+..++|+|++..++++..+ ..++.++||++....
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g----s~D~~I~iwd~~t~~- 312 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG----TSDRHIRIWNVCSGA- 312 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC----TTTCEEEEEETTTTE-
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee----cCCCEEEEEeCCccc-
Confidence 999999998885 78899999987652 1222 4567889999988877765422 356889998765432
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
....+..+ ..+....|+|+++.|++.+.. .+..|++||..+++. +..+..+...+..++|||||++|+.++.
T Consensus 313 ----~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~-~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 313 ----CLSAVDAH-SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp ----EEEEEECS-SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ----cceeeccc-cceeeeeecCCCCeEEEEEec-CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 33333333 467778999999999987631 256899999998886 7778878888899999999999999998
Q ss_pred cCCCCCCceeEEEEecCCCc
Q 004971 578 RDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~ 597 (721)
++ .|.+||+....
T Consensus 385 D~-------tvriWdv~~~~ 397 (420)
T 4gga_A 385 DE-------TLRLWRCFELD 397 (420)
T ss_dssp TT-------EEEEECCSCSS
T ss_pred CC-------eEEEEECCCCC
Confidence 86 89999986643
No 135
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.71 E-value=4e-16 Score=162.30 Aligned_cols=271 Identities=8% Similarity=0.015 Sum_probs=188.7
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGST 394 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~ 394 (721)
.+...+..++|+| +|++|+... .+..|++||+.+++ ...+.....+...+..++|+|+++ .|+....++.
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 80 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-- 80 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC--
T ss_pred CCCCcEEEEEEcC-CCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe--
Confidence 3455678899999 999988854 34569999998876 111122234567788899999999 8887665444
Q ss_pred CCCCcceeEEEec-cCCCC-ccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCC---------CceE-EEe-ecC
Q 004971 395 REDGNNQLLLENI-KSPLP-DISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG---------SNRR-QVY-FKN 458 (721)
Q Consensus 395 ~~~~~~~l~~~~~-~~~~~-~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~---------g~~~-~l~-~~~ 458 (721)
+.++++ ..... .+.. .......++|+| ++.|+..+ ++.|.+||+.+ ++.. .+. ...
T Consensus 81 -------i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 81 -------ILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp -------EEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred -------EEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence 666776 54422 1111 222334578999 88888875 78899999875 4322 122 556
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc-cCCCCccceEEcccCCCCCcceEEcc-CCCEEEEEEeeCCcee
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKN 536 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~ 536 (721)
+..+.|+|++ ++..+ .++.+.+|++.. ... ........+...+..++|+| |+++|++.+. +..
T Consensus 153 v~~~~~~~~~--l~~~~-------~d~~i~i~d~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~ 217 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGM-------NNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSI---DGR 217 (342)
T ss_dssp EEEEEECSSE--EEEEE-------STTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEET---TSE
T ss_pred eEEEEecCCc--EEEEe-------CCCeEEEEECCccccc---cceeeecCCCCceeEEEECCCCCCEEEEEec---CCc
Confidence 7889999998 66654 467888888765 221 11223333445677899999 9999998887 678
Q ss_pred EEEEECCCC------cccceEECcCCC---------cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 537 LYIMDAEGG------EGYGLHRLTEGP---------WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 537 l~~~d~~~g------~~~~~~~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
|.+|+.+.+ +. ...+..+. ..+..++|+|||++|+.+..++ .|++||+.+++....
T Consensus 218 i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-------IISCWNLQTRKKIKN 288 (342)
T ss_dssp EEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-------CEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc-------eEEEEcCccHhHhhh
Confidence 899888765 32 33444332 2678899999999999888775 899999998876554
Q ss_pred eecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971 602 IQSGS-AGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 602 ~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
... + ...+..++ |||++|+..+.++.
T Consensus 289 ~~~-~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 289 FAK-FNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCC-CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhc-ccCCCceEec--CCCCeEEEEecCCc
Confidence 432 4 56666777 99999999888875
No 136
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.1e-16 Score=169.39 Aligned_cols=228 Identities=10% Similarity=0.062 Sum_probs=156.0
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYV 443 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v 443 (721)
...+..++|+|||+.|++...++. +.++++... ...+.........++|+|||++|+..+ ++.|.+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~---------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQ---------VELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSC---------BCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCE---------EEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 446778999999999987655544 334444332 222222233345679999999998885 789999
Q ss_pred EECCCCc----eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcce
Q 004971 444 VNSDGSN----RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFP 516 (721)
Q Consensus 444 ~d~~~g~----~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 516 (721)
||+.+++ ...+. ...+..+.|+||++.|+..+ .++.+.+|++..... ......+.. +...+..+
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-------GARVISVCYFEQEND--WWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-------SSSCEEECCC-------CCCCEEECSSCCSCEEEE
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-------cCCeEEEEEECCccc--ceeeeEeecccCCCeEEE
Confidence 9998876 22232 56788999999999999987 468899998876431 012455665 66778889
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcc----------------cceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
+|+||+++|+..+. +..|++||+..++. ..+..+ .+...+..++|+|||++|+.++.++
T Consensus 153 ~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~- 227 (377)
T 3dwl_C 153 DWHPNNVLLAAGCA---DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS- 227 (377)
T ss_dssp EECTTSSEEEEEES---SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-
T ss_pred EEcCCCCEEEEEeC---CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-
Confidence 99999999999887 67899999853320 113333 5556678999999999999998875
Q ss_pred CCCCceeEEEEecCCCce----EEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 581 PGSGSFEMYLIHPNGTGL----RKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 581 ~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
.|++||+.+++. ..... .+...+..++|+|||++|+..+
T Consensus 228 ------~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 228 ------SVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp ------EEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEES
T ss_pred ------cEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEc
Confidence 899999988865 22222 2666788999999999887654
No 137
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.71 E-value=1.6e-15 Score=154.64 Aligned_cols=236 Identities=10% Similarity=0.051 Sum_probs=165.0
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-Ccc---eecccCCCCceeCcC--CCEEEEEe-C
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDI---SLFRFDGSFPSFSPK--GDRIAFVE-F 438 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~SpD--G~~la~~~-~ 438 (721)
..|...+..++|+|||++|+..+.++. +.++++.... ..+ .........++|+++ |+.|+..+ +
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~---------v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKT---------IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCE---------EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 345667788999999999998776665 4455554321 111 112223345788864 88888875 7
Q ss_pred CcEEEEECCCCce---EEEe--ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971 439 PGVYVVNSDGSNR---RQVY--FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511 (721)
Q Consensus 439 ~~l~v~d~~~g~~---~~l~--~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 511 (721)
+.|.+||+.+++. ..+. ...+..+.|+|+ |+.|+..+ .++.+++|++..... .....+..+..
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-------~d~~v~~wd~~~~~~---~~~~~~~~h~~ 146 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAI 146 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTSEEEEEEBCSSSC---BCCEEEECCSS
T ss_pred CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-------CCCcEEEEEecCCCc---eeeeeeecccC
Confidence 8999999987742 2222 456789999998 88888876 578999999865432 12344555666
Q ss_pred CCcceEEccC-------------CCEEEEEEeeCCceeEEEEECCCCcc--cceEECcCCCcCceeeEEccCC---CEEE
Q 004971 512 NNAFPSVSPD-------------GKWIVFRSTRTGYKNLYIMDAEGGEG--YGLHRLTEGPWSDTMCNWSPDG---EWIA 573 (721)
Q Consensus 512 ~~~~~~~SpD-------------g~~l~~~s~~~g~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~~~SpDG---~~l~ 573 (721)
.+..++|+|+ +++|+..+. +..|++||+.+++. .....+..+...+..++|+|++ ++|+
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~---D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcC---CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 7788999997 578888776 77899999877652 1134566677778999999995 7788
Q ss_pred EEEccCCCCCCceeEEEEecCCCc---eEEeee-cCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTG---LRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.++.+. .|.+||+.++. ...+.. ..+...+..++|+|||++|+..+.++.
T Consensus 224 s~s~D~-------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 224 SVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp EEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred EEECCC-------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 888775 79999987643 122221 224556778999999999998877653
No 138
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.71 E-value=2e-15 Score=160.97 Aligned_cols=294 Identities=12% Similarity=0.036 Sum_probs=190.1
Q ss_pred eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-----------cCCCCcccCcEEcC-
Q 004971 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-----------VSPKTHHLNPFISP- 379 (721)
Q Consensus 312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-----------~~~~~~~~~~~~Sp- 379 (721)
...+..+...+..++|+|.+|++|+... .++.|.+||+.+++....... ..+...+..++|+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 3344456667788999985677777754 334599999998753222110 12566788899999
Q ss_pred CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCc---CCCEEEEE-eCCcEEEEECCCCceE-E
Q 004971 380 DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSP---KGDRIAFV-EFPGVYVVNSDGSNRR-Q 453 (721)
Q Consensus 380 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~Sp---DG~~la~~-~~~~l~v~d~~~g~~~-~ 453 (721)
+++.|+....++ .+.++++...... ..........+.++| ++..++.. .++.|.+||+.+++.. .
T Consensus 111 ~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 111 DTGMFTSSSFDK---------TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp CTTCEEEEETTS---------EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred CCcEEEEEeCCC---------eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 666776654443 3566666554211 111122223456666 45577777 4789999999887643 3
Q ss_pred Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc---------------ccCCCCCcce
Q 004971 454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL---------------TTNGKNNAFP 516 (721)
Q Consensus 454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~ 516 (721)
+. ...+..+.|+|++++++++. ..++.+.+|++..... ....+ ..+...+..+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~------~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATA------SADSRVKLWDVRRASG----CLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEE------ETTSCEEEEETTCSSC----CSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEE------cCCCcEEEEECCCCCc----ccccccccccccceeeccccccccCceeEE
Confidence 33 56788999999999744443 2578899998865432 22333 2334566778
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEE-ccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNW-SPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
+|+|||++|+..+. +..|++||+.+++. ...+... ........+ ...+..+++...++ .|++|
T Consensus 252 ~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~v~ 319 (408)
T 4a11_B 252 CFTSDGLHLLTVGT---DNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS-------TIAVY 319 (408)
T ss_dssp EECTTSSEEEEEET---TSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT-------EEEEE
T ss_pred EEcCCCCEEEEecC---CCeEEEEECCCCcc--ceeccccccccccccceeEEecCCCceEEEEecCC-------EEEEE
Confidence 99999999998887 77899999998874 2222111 111112222 23344566666554 89999
Q ss_pred ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
|+.+++....... +...+..++|+|||++|+..+.++ .|++||+++++..
T Consensus 320 d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg-----------------~i~iw~~~~~~~~ 369 (408)
T 4a11_B 320 TVYSGEQITMLKG-HYKTVDCCVFQSNFQELYSGSRDC-----------------NILAWVPSLYEPV 369 (408)
T ss_dssp ETTTCCEEEEECC-CSSCEEEEEEETTTTEEEEEETTS-----------------CEEEEEECC----
T ss_pred ECcCCcceeeecc-CCCeEEEEEEcCCCCEEEEECCCC-----------------eEEEEeCCCCCcc
Confidence 9999887665543 677888999999999998877665 3999999887543
No 139
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.6e-15 Score=155.71 Aligned_cols=273 Identities=10% Similarity=-0.008 Sum_probs=179.6
Q ss_pred ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-cee-----cccCCCCceeCcCCCEEEEEe-
Q 004971 365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISL-----FRFDGSFPSFSPKGDRIAFVE- 437 (721)
Q Consensus 365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~-----~~~~~~~~~~SpDG~~la~~~- 437 (721)
+..|...+..++|+|+ .|+..+.++. +.++++..+... +.. .......++|+|+|+.|+..+
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~---------i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRK---------IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSC---------EEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCE---------EEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 3456677788899987 6666555544 455555443111 111 112234579999999998885
Q ss_pred CCcEEEEECCCCc-------eE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 438 FPGVYVVNSDGSN-------RR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 438 ~~~l~v~d~~~g~-------~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
++.|.+|++.... .. .+. ...+..++|+|+|++|+..+ .++.+.||++...+. .......+.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s-------~D~~v~iwd~~~~~~-~~~~~~~~~ 150 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS-------RDKSVWIWETDESGE-EYECISVLQ 150 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE-------TTSCEEEEECCTTCC-CCEEEEEEC
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe-------CCCEEEEEeccCCCC-CeEEEEEec
Confidence 7899999985421 11 222 45688999999999999887 578999999854321 011344566
Q ss_pred cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC--CCEEEEEEccCCCCCCc
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD--GEWIAFASDRDNPGSGS 585 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~ 585 (721)
.+...+..++|+||++.|+..+. +..|.+||..++....+..+..+...+..++|+|+ +..|+.++.+.
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~---D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~------ 221 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSY---DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS------ 221 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS------
T ss_pred cCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC------
Confidence 67677888999999999998887 77899999876642235666677777889999999 67888888775
Q ss_pred eeEEEEecCCCc--------eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 586 FEMYLIHPNGTG--------LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 586 ~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.|.+||+.++. ........+...+..++|++++ .|+..+.++ .|.+|+..+++
T Consensus 222 -~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-----------------~v~iw~~~~~~ 282 (330)
T 2hes_X 222 -TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-----------------VLAVYEEVDGE 282 (330)
T ss_dssp -CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-----------------CEEEEEEETTE
T ss_pred -eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-----------------EEEEEEcCCCc
Confidence 79999886541 1111111255678889999776 566666554 38889987764
Q ss_pred eEE----eccCCC-CCCCceecC--C--cCCccccc
Q 004971 658 LKR----LTQNSF-EDGTPAWGP--R--FIRPVDVE 684 (721)
Q Consensus 658 ~~~----lt~~~~-~~~~~~~sp--~--~l~~~~~~ 684 (721)
.+. +..|.. .+...+|+| + +|+.+..|
T Consensus 283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 283 WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred eEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 322 233443 556778988 2 45655543
No 140
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.5e-16 Score=161.70 Aligned_cols=244 Identities=10% Similarity=0.069 Sum_probs=174.8
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----cceecccCCCCceeCcC--CCEEEEEe-C
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----DISLFRFDGSFPSFSPK--GDRIAFVE-F 438 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~SpD--G~~la~~~-~ 438 (721)
..|...+..++|+|||+.|+....++. +.++++..... .+.........++|+++ ++.|+..+ +
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKT---------IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSC---------EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCc---------EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 446777888999999999998766554 44444432211 11112223345789877 88888885 7
Q ss_pred CcEEEEECCCCceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971 439 PGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 511 (721)
+.|.+||+.+++...+. ...+..+.|+|+ ++.|+..+ .++.+.+|++..... .....+..+..
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~---~~~~~~~~~~~ 148 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAI 148 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTSEEEEEECCTTSC---CCEEEEECCTT
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-------CCCcEEEEecCCCCc---eeeEEecCCCC
Confidence 88999999988633222 457889999999 99999886 578999999876532 13344555666
Q ss_pred CCcceEEcc-------------CCCEEEEEEeeCCceeEEEEECCCCccc--ceEECcCCCcCceeeEEccC---CCEEE
Q 004971 512 NNAFPSVSP-------------DGKWIVFRSTRTGYKNLYIMDAEGGEGY--GLHRLTEGPWSDTMCNWSPD---GEWIA 573 (721)
Q Consensus 512 ~~~~~~~Sp-------------Dg~~l~~~s~~~g~~~l~~~d~~~g~~~--~~~~l~~~~~~~~~~~~SpD---G~~l~ 573 (721)
.+..++|+| |++.|++.+. +..|++||+.++... ....+..+...+..++|+|| ++.|+
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 788899999 7999998887 678999999866531 13345556667889999999 88888
Q ss_pred EEEccCCCCCCceeEEEEecCCCc---eEEee-ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971 574 FASDRDNPGSGSFEMYLIHPNGTG---LRKLI-QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649 (721)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (721)
.++.++ .|++||+.+++ ...+. ...+...+..++|+|||++|+..+.++ .|+
T Consensus 226 s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----------------~i~ 281 (379)
T 3jrp_A 226 SVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-----------------KVT 281 (379)
T ss_dssp EEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS-----------------SEE
T ss_pred EEeCCC-------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC-----------------cEE
Confidence 888775 79999998864 22222 112455677899999999999887754 388
Q ss_pred EEEcCC
Q 004971 650 KIKLDG 655 (721)
Q Consensus 650 ~~d~~~ 655 (721)
+|++..
T Consensus 282 iw~~~~ 287 (379)
T 3jrp_A 282 LWKENL 287 (379)
T ss_dssp EEEEEE
T ss_pred EEeCCC
Confidence 888764
No 141
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-16 Score=168.55 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=165.6
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~ 448 (721)
...+..++|||||+.++.++.+.. +. +...+ ..+.........++||||| ..+.+.+++.++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~T---------V~--d~~~~-~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~ 76 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDIS---------IG--QPKYA-KDINCNSKNLFHVKEFPLE------FENKLDFELAQQ 76 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEE---------EE--EECCC-SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCS
T ss_pred hccEEEEEECCCCCEEEEEcCCce---------ee--ccccc-ceecCCCccEEEEEECCCC------CcceEEEEeCCC
Confidence 456778999999999998654443 11 32222 1223334445668999999 122222222222
Q ss_pred CceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-----CCcceEEccCC
Q 004971 449 SNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-----NNAFPSVSPDG 522 (721)
Q Consensus 449 g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~SpDg 522 (721)
.....+. ...+..++|||||++||..+ .++.+.||+.. .....+. +.. .+..++|||||
T Consensus 77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s-------~dg~V~iwd~~-------~~l~~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSPIDDWMAVLS-------NNGNVSVFKDN-------KMLTNLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp SCSSTTSCSCCEEEEEECSSSSCEEEEE-------TTSCEEEEETT-------EEEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred ceEeecCCCCcEEEEEECCCCCEEEEEe-------CCCcEEEEeCC-------ceeeecc-CCCccccccEEEEEEcCCC
Confidence 2211111 46788999999999999987 57889999721 1444444 332 36789999999
Q ss_pred CEEEEEEeeCCceeEEEEECCCCccc-----ceEEC----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGEGY-----GLHRL----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~~~-----~~~~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
++|+.++. +..|.+||+.++... .+..+ ..+...+..++||||| |+.++.+. .+++||+
T Consensus 142 ~~LAsgs~---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~-------tVrlWd~ 209 (588)
T 2j04_A 142 SSIVVGNE---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN-------SVFSMTV 209 (588)
T ss_dssp SCEEEEET---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC-------CEEEECC
T ss_pred CEEEEEcC---CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC-------eEEEEEC
Confidence 99999998 889999999987521 12444 3334568899999999 66666664 8999999
Q ss_pred CCCceE---EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec-cCCCCCC
Q 004971 594 NGTGLR---KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT-QNSFEDG 669 (721)
Q Consensus 594 ~~~~~~---~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt-~~~~~~~ 669 (721)
++++.. +....++...+..++|+ |+.|+.++ ++ .|.+||+++++...+. +|.....
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~-----------------tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG-----------------YVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS-----------------EEEEEETTTTEEEEEECSCCSCCC
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC-----------------eEEEEECCCCeEEEEEcCCCceEE
Confidence 888742 12222366789999999 68888765 32 4999999998884444 7777788
Q ss_pred Ccee--cCC
Q 004971 670 TPAW--GPR 676 (721)
Q Consensus 670 ~~~~--sp~ 676 (721)
...| +|+
T Consensus 270 ~va~~~s~d 278 (588)
T 2j04_A 270 IIPLNHEKE 278 (588)
T ss_dssp EEEETTCSS
T ss_pred EEEeeeCCC
Confidence 8899 887
No 142
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.69 E-value=2.4e-15 Score=160.61 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=178.3
Q ss_pred CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC------CCcceecccCCCCceeCc-CCCEEEEEe-CCcEEEEE
Q 004971 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP------LPDISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVN 445 (721)
Q Consensus 374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d 445 (721)
.++++|+...+++....+ ..+.++++... ...+.........++|+| +++.|+..+ ++.|.+|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~--------g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGG--------GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECSSEEEEEBCCSSS--------CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECCCeEEEEEEEcCC--------CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 466776655444322222 23666665332 111222233345679999 899888885 77899999
Q ss_pred CCCCc--------eEEEe--ecCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCC
Q 004971 446 SDGSN--------RRQVY--FKNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKN 512 (721)
Q Consensus 446 ~~~g~--------~~~l~--~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~ 512 (721)
+.++. ...+. ...+..+.|+|+++ .|+..+ .++.+.||++.... ....+ ..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~-----~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-------CDNVILVWDVGTGA-----AVLTLGPDVHPDT 178 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE-------TTSCEEEEETTTTE-----EEEEECTTTCCSC
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc-------CCCEEEEEECCCCC-----ccEEEecCCCCCc
Confidence 98762 23333 55788999999995 666554 57889999876432 45556 556677
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcC-ceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
+..++|+|||++|+..+. +..|++||+.+++. +..+ ..+... +..+.|+|||+.|+.+.... ....|++
T Consensus 179 v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~----~d~~i~i 249 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCR---DKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM----SERQVAL 249 (402)
T ss_dssp EEEEEECTTSSCEEEEET---TSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTT----CCEEEEE
T ss_pred eEEEEECCCCCEEEEEec---CCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCC----CCceEEE
Confidence 888999999999999886 78999999998874 4444 333332 57899999999888774221 2358999
Q ss_pred EecCCCce-EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEeccC--C
Q 004971 591 IHPNGTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQN--S 665 (721)
Q Consensus 591 ~d~~~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~~--~ 665 (721)
||+.+++. .......+...+..++|+|||++|++++..++ .|++||+.+++ ...+..+ .
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg----------------~i~i~d~~~~~~~~~~l~~~~~~ 313 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS----------------SIRYFEITSEAPFLHYLSMFSSK 313 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS----------------CEEEEEECSSTTCEEEEEEECCS
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC----------------eEEEEEecCCCcceEeecccccC
Confidence 99988653 22222225566888999999999988775443 49999998877 5566553 3
Q ss_pred CCCCCceecCCc
Q 004971 666 FEDGTPAWGPRF 677 (721)
Q Consensus 666 ~~~~~~~~sp~~ 677 (721)
..+...+|+|+.
T Consensus 314 ~~v~~~~~sp~~ 325 (402)
T 2aq5_A 314 ESQRGMGYMPKR 325 (402)
T ss_dssp SCCSEEEECCGG
T ss_pred CcccceEEeccc
Confidence 667889999963
No 143
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.68 E-value=1.1e-14 Score=151.23 Aligned_cols=283 Identities=11% Similarity=0.013 Sum_probs=186.7
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--c--ee---cccC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--I--SL---FRFD 420 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~--~~---~~~~ 420 (721)
++++...+.+......+.+|...+..++|+|+ ++.|+..+.++. +.++++...... . .. ....
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~---------i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKT---------IIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSC---------EEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCe---------EEEEECCCCCcccceeeEEEeCCCCC
Confidence 44444444443333345678888999999998 567777666555 445555433211 1 11 1223
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
...+.|+|||++|+..+ ++.|.+|+.......... ........++++++.|+..+ .++.+.+|++....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-------~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-------RDKTIKLWNTLGVC 161 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-------TTSCEEEECTTSCE
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec-------CCCeEEEEEeCCCc
Confidence 44578999999998885 778999999887654443 44566788999999999886 46788888654321
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCE--EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKW--IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~--l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
.....+..+...+...+|++++.. ++..+. +..|++||+.+++. +..+..+...+..++|+|||++|+.
T Consensus 162 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 162 ----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---DKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp ----EEEECSSSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ----eEEEEeccccCcccceEEccCCCCcEEEEEcC---CCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEE
Confidence 011222333456667889888654 343443 66899999998875 5566666777889999999999999
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
++.++ .|.+||+.+++...... ....+..+.|+|++..++. +.+. .|++||++
T Consensus 233 ~s~Dg-------~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~d~-----------------~i~iwd~~ 285 (340)
T 4aow_A 233 GGKDG-------QAMLWDLNEGKHLYTLD--GGDIINALCFSPNRYWLCA-ATGP-----------------SIKIWDLE 285 (340)
T ss_dssp EETTC-------EEEEEETTTTEEEEEEE--CSSCEEEEEECSSSSEEEE-EETT-----------------EEEEEETT
T ss_pred EeCCC-------eEEEEEeccCceeeeec--CCceEEeeecCCCCceeec-cCCC-----------------EEEEEECC
Confidence 88875 89999999887665544 4456788999999876654 3333 49999998
Q ss_pred CCCeE-Eec---------cCCCCCCCceecCC--cCCcccc
Q 004971 655 GSDLK-RLT---------QNSFEDGTPAWGPR--FIRPVDV 683 (721)
Q Consensus 655 ~~~~~-~lt---------~~~~~~~~~~~sp~--~l~~~~~ 683 (721)
++... .+. .+...+...+|+|+ +|+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 87543 322 23444566788886 4555543
No 144
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.68 E-value=1.4e-14 Score=146.32 Aligned_cols=272 Identities=11% Similarity=0.125 Sum_probs=194.7
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC-----CCcc
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE-----DGNN 400 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~-----~~~~ 400 (721)
-+++ +|++|+|.... +...|+.++.+....+++.... .--++++|++|+|+......... ....
T Consensus 20 ~~~~-~g~~iy~~n~~---d~~~ly~~~~dg~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 20 LFCE-SDGEVFFSNTN---DNGRLYAMNIDGSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp CEEE-ETTEEEEEEGG---GTTEEEEEETTSCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred EEEE-eCCEEEEEeCC---CCceEEEEcCCCCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence 3667 99999997643 2356999999877777776421 24568999999998876521100 0015
Q ss_pred eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEe
Q 004971 401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~ 475 (721)
.|+..++.+...... .. .....|+++|++|+|.. ...|+.+++++...++|..... ..++|+|+.|+|+.
T Consensus 89 ~Iy~i~~dg~~~~~l-~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 89 SLCRIKRNGHGSTVL-DP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEEETTSCCCEEE-EC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred eEEEEeCCCCcceEe-ec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 688888877643221 11 22247899999999985 4579999999988888885444 56789999999986
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE 555 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~ 555 (721)
. +...|+.+++++. ..++|.... ... .++|+|++|+|.....+ .+|++++++++. ...|+.
T Consensus 164 ~--------g~~~Iy~~~l~g~----~~~~l~~~~--~~~-~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~---~~~Lt~ 224 (302)
T 3s25_A 164 P--------KNGQLYRYDTASQ----SEALFYDCN--CYK-PVVLDDTNVYYMDVNRD-NAIVHVNINNPN---PVVLTE 224 (302)
T ss_dssp T--------TTCCEEEEETTTT----EEEEEECSC--EEE-EEEEETTEEEEEEGGGT-TEEEEECSSSCC---CEECSC
T ss_pred C--------CCceEEEEECCCC----CEEEEeCCC--ccc-eeeecCCEEEEEEcCCC-cEEEEEECCCCC---eEEEeC
Confidence 2 5567899998875 556665432 222 36699999999886433 689999999887 566765
Q ss_pred CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971 556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635 (721)
Q Consensus 556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 635 (721)
.. .+.|+|+|++|+|+.... ...|+.+++++...+++... . ...+++-+.+|+|+....+
T Consensus 225 ~~----~~~~~~~g~~Iy~~~~~~-----~~~i~~~~~DG~~r~~l~~~----~--~~~i~i~~d~Iy~td~~~~----- 284 (302)
T 3s25_A 225 AN----IEHYNVYGSLIFYQRGGD-----NPALCVVKNDGTGFKELAKG----E--FCNINVTSQYVYFTDFVSN----- 284 (302)
T ss_dssp SC----EEEEEEETTEEEEEECSS-----SCEEEEEETTSCCCEEEEES----C--EEEEEECSSEEEEEETTTC-----
T ss_pred CC----cceEEECCCEEEEEECCC-----CcEEEEEECCCCccEEeeCC----c--cceEEEeCCEEEEEECCCC-----
Confidence 32 367999999999986542 25899999999887777642 1 2367788999999886554
Q ss_pred CCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.|++++++|...++|.+
T Consensus 285 -----------~i~~~~~dGs~~~~l~~ 301 (302)
T 3s25_A 285 -----------KEYCTSTQNPDTIKALQ 301 (302)
T ss_dssp -----------CEEEEESSSCCSCEECC
T ss_pred -----------eEEEEECCCCCceEecC
Confidence 39999999987776653
No 145
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.68 E-value=1.3e-15 Score=157.03 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=155.2
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
.+...+..++|+| ||++|+..+ .+..|++||+.+++...+..+.+|...+..++|+|+
T Consensus 11 ~H~~~V~~v~~s~-~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~---------------- 68 (316)
T 3bg1_A 11 SHEDMIHDAQMDY-YGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP---------------- 68 (316)
T ss_dssp ---CCEEEEEECG-GGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG----------------
T ss_pred cccCeEEEeeEcC-CCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC----------------
Confidence 4555678899999 999988854 445699999987653333333333333444444331
Q ss_pred CCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE---EEe--ecCceeeEEcCC--C
Q 004971 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR---QVY--FKNAFSTVWDPV--R 468 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~---~l~--~~~~~~~~~spd--g 468 (721)
.+|+.|+..+ ++.|.+||+.+++.. .+. ...+..++|+|+ |
T Consensus 69 -------------------------------~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 69 -------------------------------MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp -------------------------------GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred -------------------------------CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence 0244444443 455666666554321 121 356788999998 7
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC-----------------CCEEEEEEee
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-----------------GKWIVFRSTR 531 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD-----------------g~~l~~~s~~ 531 (721)
..|+..+ .++.++||++..... ......+..+...+..++|+|+ +++|+..+.
T Consensus 118 ~~lasgs-------~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~- 187 (316)
T 3bg1_A 118 LILACGS-------SDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC- 187 (316)
T ss_dssp SCEEEEC-------SSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT-
T ss_pred cEEEEEc-------CCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC-
Confidence 7888775 578999999865421 0001223344456777899998 466776665
Q ss_pred CCceeEEEEECCCCc-ccceEECcCCCcCceeeEEccCC----CEEEEEEccCCCCCCceeEEEEecCCC---c-eEEee
Q 004971 532 TGYKNLYIMDAEGGE-GYGLHRLTEGPWSDTMCNWSPDG----EWIAFASDRDNPGSGSFEMYLIHPNGT---G-LRKLI 602 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~~~~~~i~~~d~~~~---~-~~~l~ 602 (721)
+..|.+||+.++. ...+..+..+...+..++|+|++ +.|+.++.++ .|.+|++.+. + ...+.
T Consensus 188 --D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-------~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 188 --DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-------RVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp --TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-------EEEEEECSSTTCCCCBCCEE
T ss_pred --CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-------eEEEEEccCccccchhhhhh
Confidence 6789999987542 12245566666778899999997 7888888775 8999998762 1 11122
Q ss_pred ecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 603 QSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
.. +...+..++|+|||++|+..+.+..
T Consensus 259 ~~-~~~~v~~v~~sp~g~~las~~~D~~ 285 (316)
T 3bg1_A 259 HK-FNDVVWHVSWSITANILAVSGGDNK 285 (316)
T ss_dssp EE-CSSCEEEEEECTTTCCEEEEESSSC
T ss_pred hc-CCCcEEEEEEcCCCCEEEEEcCCCe
Confidence 22 5667889999999999998887664
No 146
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.68 E-value=5.2e-15 Score=150.89 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=170.4
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGS 393 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~ 393 (721)
..+...+..++|+| ||++|+... .+..|++||+.++..+.+..+.+|...+..++|+|+ |+.|+..+.++.
T Consensus 6 ~~h~~~V~~~~~s~-~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~- 78 (297)
T 2pm7_B 6 NAHNEMIHDAVMDY-YGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK- 78 (297)
T ss_dssp CSCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-
T ss_pred cCCcCceEEEEECC-CCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-
Confidence 34555677899999 999998854 345699999976533344455667788889999874 888887765554
Q ss_pred CCCCCcceeEEEeccCCC-Cccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCc---eEEEe--ecCcee
Q 004971 394 TREDGNNQLLLENIKSPL-PDISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSN---RRQVY--FKNAFS 461 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~---~~~l~--~~~~~~ 461 (721)
+.++++..+. ..+.. .......++|+|+ |+.|+..+ ++.|.+||+..+. ...+. ...+..
T Consensus 79 --------v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 79 --------VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp --------EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred --------EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 5566665432 11111 1223445799998 88888875 7889999997653 22232 456778
Q ss_pred eEEcCC-------------CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC---CEE
Q 004971 462 TVWDPV-------------REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG---KWI 525 (721)
Q Consensus 462 ~~~spd-------------g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg---~~l 525 (721)
+.|+|+ ++.|+..+ .++.++||++..... .......+..+...+..++|+|++ ++|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs-------~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGG-------ADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp EEECCCC------------CCEEEEEE-------TTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred EeecCCcccccccCCCCCCcceEEEEc-------CCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999997 46777776 578999999976431 001234566677788899999995 778
Q ss_pred EEEEeeCCceeEEEEECCCCcccc-eEEC--cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYG-LHRL--TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~-~~~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+..+. +..|.+||++++.... ...+ ..+...+..++|+|||++|+.++.++ .|.+|+..
T Consensus 223 as~s~---D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-------~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVSQ---DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-------KVTLWKEN 284 (297)
T ss_dssp EEEET---TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-------CEEEEEEC
T ss_pred EEEEC---CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-------cEEEEEEC
Confidence 87776 7789999987643111 1223 23345567899999999999998875 78888865
No 147
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.68 E-value=1.1e-14 Score=149.66 Aligned_cols=273 Identities=16% Similarity=0.133 Sum_probs=182.7
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEe--CCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV--TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI 349 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l 349 (721)
.+||+++-+.. .. ++.+.||.+.... ....+ ..+...+..++|+| +|++|+... .+..|
T Consensus 31 l~WS~~~~lAv---g~-D~tV~iWd~~tg~---------~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs-----~Dg~v 91 (318)
T 4ggc_A 31 VDWSSGNVLAV---AL-DNSVYLWSASSGD---------ILQLLQMEQPGEYISSVAWIK-EGNYLAVGT-----SSAEV 91 (318)
T ss_dssp EEECTTSEEEE---EE-TTEEEEEETTTCC---------EEEEEECCSTTCCEEEEEECT-TSSEEEEEE-----TTSEE
T ss_pred EEECCCCEEEE---Ee-CCEEEEEECCCCC---------EEEEEEecCCCCeEEEEEECC-CCCEEEEEE-----CCCcE
Confidence 58999864333 22 6788999543221 22222 34455678899999 999998754 45569
Q ss_pred EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCcee
Q 004971 350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPSF 426 (721)
Q Consensus 350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 426 (721)
.+||+++++.. .....+.... ..+++++..++.....+. +...........+... ........+
T Consensus 92 ~iw~~~~~~~~--~~~~~h~~~~--~~~~~~~~~l~s~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 92 QLWDVQQQKRL--RNMTSHSARV--GSLSWNSYILSSGSRSGH---------IHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEETTTTEEE--EEEECCSSCE--EEEEEETTEEEEEETTSE---------EEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEeecCCceeE--EEecCccceE--EEeecCCCEEEEEecCCc---------eEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999998743 3334444433 456667777776544332 3333333322222111 122334688
Q ss_pred CcCCCEEEEEe-CCcEEEEECCCCceE-----EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 427 SPKGDRIAFVE-FPGVYVVNSDGSNRR-----QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 427 SpDG~~la~~~-~~~l~v~d~~~g~~~-----~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
+++|+.|+... ++.|.+||+.+++.. ... .+.+....++|++..++....+ ..++.++||+....
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~i~lwd~~~~--- 231 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG----TSDRHIRIWNVCSG--- 231 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC----TTTCEEEEEETTTC---
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec----CCCCEEEEEecccc---
Confidence 99999988875 788999999876521 111 4567789999998877765432 24577888876543
Q ss_pred CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971 499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
...........+....|+|+++.+++.+. ..+..|++||+.+++. +..+..+...+..++|+|||++|+.++.+
T Consensus 232 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~sg-~~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 232 ---ACLSAVDAHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp ---CEEEEEECSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ---cccccccceeeeeeeeecccccceEEEEE-cCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 22333334446777899999999988763 1256899999999886 77777777888999999999999999888
Q ss_pred CCCCCCceeEEEEecCCC
Q 004971 579 DNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~ 596 (721)
+ .|.+||+...
T Consensus 306 ~-------~v~iWd~~~~ 316 (318)
T 4ggc_A 306 E-------TLRLWRCFEL 316 (318)
T ss_dssp T-------EEEEECCSCC
T ss_pred C-------eEEEEECCCC
Confidence 6 8999998654
No 148
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=2.6e-14 Score=150.41 Aligned_cols=277 Identities=11% Similarity=0.012 Sum_probs=160.1
Q ss_pred EEE--EECCCCceEEeeccc-CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-CCC-Ccceecc--cCC
Q 004971 349 IEL--FDLVKNKFIELTRFV-SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPL-PDISLFR--FDG 421 (721)
Q Consensus 349 l~l--~dl~tg~~~~l~~~~-~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~--~~~ 421 (721)
|++ +|.++++...+.... ........++|+|||++|+..... . +.++++. .+. ..+.... ...
T Consensus 16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~---------v~~~~~~~~g~~~~~~~~~~~g~~ 85 (365)
T 1jof_A 16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-K---------WSSFAVKSPTEIVHEASHPIGGHP 85 (365)
T ss_dssp EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-E---------EEEEEEEETTEEEEEEEEECCSSG
T ss_pred EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-e---------EEEEEECCCCCEEEeeEeecCCCC
Confidence 555 456778765554321 112345678999999998876553 2 3344433 221 1111111 123
Q ss_pred CCceeCcCCCEE-EEE---------------eCCcEEEEECC-CCceE-EEe------ecCceeeEEcCCCCeEEEEecC
Q 004971 422 SFPSFSPKGDRI-AFV---------------EFPGVYVVNSD-GSNRR-QVY------FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 422 ~~~~~SpDG~~l-a~~---------------~~~~l~v~d~~-~g~~~-~l~------~~~~~~~~~spdg~~la~~~~~ 477 (721)
..++|+|||++| ++. ..+.+.+|+++ .++.. .+. ...+..++|||||++|+++..
T Consensus 86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~- 164 (365)
T 1jof_A 86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL- 164 (365)
T ss_dssp GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-
T ss_pred ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-
Confidence 457899999863 332 24568899986 35432 222 135678999999999887652
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc----eE
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG----LH 551 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~----~~ 551 (721)
..+.+.+|+++..+. ......+. .+......++|||||++|++....++.-.+|.+|..+|+... +.
T Consensus 165 -----~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 165 -----TANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp -----TTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred -----CCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 346778887763121 00112222 113356778999999999888754333344445555665311 11
Q ss_pred ECcCC-C--c-------CceeeE-EccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEee--ecCCCCCcCCeEECC
Q 004971 552 RLTEG-P--W-------SDTMCN-WSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLI--QSGSAGRANHPYFSP 617 (721)
Q Consensus 552 ~l~~~-~--~-------~~~~~~-~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~--~~~~~~~~~~~~~Sp 617 (721)
.+..+ . . ....++ |||||++|+++....+. .....|.+|+++ +++...+. ..........++|||
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC-CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 22221 0 1 246789 99999999776643200 001268888885 56665432 111234567889999
Q ss_pred ---CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971 618 ---DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660 (721)
Q Consensus 618 ---DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 660 (721)
||++|+++..+.+ .|.+|++++..++.
T Consensus 317 ~~~dg~~l~v~~~~~~----------------~v~v~~~~~~~l~~ 346 (365)
T 1jof_A 317 CPWSDEWMAITDDQEG----------------WLEIYRWKDEFLHR 346 (365)
T ss_dssp CTTCTTEEEEECSSSC----------------EEEEEEEETTEEEE
T ss_pred CCcCCCEEEEEEcCCC----------------eEEEEEEchhhCce
Confidence 8999988766543 37777776664433
No 149
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.68 E-value=2.2e-15 Score=158.09 Aligned_cols=276 Identities=14% Similarity=0.084 Sum_probs=185.6
Q ss_pred ceeccC---Ce-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC-----CCCCcccCceeecCC----CCEEEEE
Q 004971 272 PCWVDE---ST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT-----PPGLHAFTPATSPGN----NKFIAVA 338 (721)
Q Consensus 272 ~~ws~d---g~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sp~d----G~~la~~ 338 (721)
.+|+|+ +. .+++... ++.+.+|...... ....+. .+...+..++|+| + |++|+..
T Consensus 24 i~~~p~~~~~~~~~~~~~~--~~~v~vw~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 91 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVG--SNRVTLYECHSQG---------EIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCCTTSCEEEEEEE--TTEEEEEEECGGG---------CEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEE
T ss_pred EEEecccCCCCceEEEECC--CCEEEEEEcCCCc---------EEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEe
Confidence 478863 33 4443222 4578889665333 222221 1334577899999 8 5567764
Q ss_pred EecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce--
Q 004971 339 TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-- 415 (721)
Q Consensus 339 ~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 415 (721)
. .+..|.+||+.+++.. .....+...+..+.|+| +++.|+....++. +.++++..+.....
T Consensus 92 ~-----~dg~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~---------i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 92 G-----SRGIIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKDHA---------LRLWNIQTDTLVAIFG 155 (366)
T ss_dssp E-----TTCEEEEECTTTCCEE--EEEESCCSCEEEEEECSSCTTEEEEEETTSC---------EEEEETTTTEEEEEEC
T ss_pred c-----CCCEEEEEEchhceEe--eeecCCCCcEEEEEECCCCCCEEEEEeCCCe---------EEEEEeecCeEEEEec
Confidence 3 3456999999988743 33345677888999999 8888887665554 56666655422111
Q ss_pred ---ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE-------------------------------eecCce
Q 004971 416 ---LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV-------------------------------YFKNAF 460 (721)
Q Consensus 416 ---~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l-------------------------------~~~~~~ 460 (721)
........++|+|+|+.|+..+ ++.|.+||+.+++.... ....+.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 1222344579999999998885 78999999987642110 134567
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC---------CCccceEEcccCCCCCcceEEccC--CCEEEEEE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV---------DGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRS 529 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s 529 (721)
.+.|+ ++.|+..+ .++.+.+|++..... ........+..+...+..++|+|| |++|+..+
T Consensus 236 ~~~~~--~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 236 CVRWL--GDLILSKS-------CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp EEEEE--TTEEEEEC-------SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred EEEEc--CCEEEEEe-------cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 78887 67777765 578899999865421 000123445555567788999999 99999887
Q ss_pred eeCCceeEEEEECCCCccc--ceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 530 TRTGYKNLYIMDAEGGEGY--GLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~~~--~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
. +..|++||+.+++.. ....+..+ ...+..++|+|||++|+.++.++ .|++||+.
T Consensus 307 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-------~i~iwd~~ 365 (366)
T 3k26_A 307 Q---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-------SIWRWDRL 365 (366)
T ss_dssp T---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------EEEEEEC-
T ss_pred c---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-------EEEEEEec
Confidence 6 778999999987642 12344444 46678999999999999998875 89999975
No 150
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-15 Score=157.44 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=176.3
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGS 393 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~ 393 (721)
..|...+..++|+| ||++|+... .+..|.+||+..+....+.....+...+..++|+++ ++.|+....++.
T Consensus 8 ~~h~~~v~~~~~s~-~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~- 80 (379)
T 3jrp_A 8 NAHNELIHDAVLDY-YGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK- 80 (379)
T ss_dssp EECCCCEEEEEECS-SSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC-
T ss_pred cCCcccEEEEEEcC-CCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE-
Confidence 34555678899999 999998854 334599999986555455555667778889999988 888888766554
Q ss_pred CCCCCcceeEEEeccCCC-Cccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCce---EEEe--ecCcee
Q 004971 394 TREDGNNQLLLENIKSPL-PDISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNR---RQVY--FKNAFS 461 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~---~~l~--~~~~~~ 461 (721)
+.++++..+. ..+.. .......++|+|+ ++.|+... ++.|.+||+..+.. ..+. ...+..
T Consensus 81 --------v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 81 --------VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp --------EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred --------EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence 4555554432 01111 1223445799999 88888885 78899999987742 2222 456789
Q ss_pred eEEcC-------------CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---CCEE
Q 004971 462 TVWDP-------------VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---GKWI 525 (721)
Q Consensus 462 ~~~sp-------------dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---g~~l 525 (721)
+.|+| |++.|+..+ .++.+.+|++..... .......+..+...+..++|+|| +++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGG-------ADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp EEECCCC----------CTTCEEEEEE-------TTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred EEEcCccccccccccCCCCCCEEEEEe-------CCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 99999 689998886 578999999986542 00122345556667888999999 8888
Q ss_pred EEEEeeCCceeEEEEECCCCcccc-eEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYG-LHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~-~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
+..+. +..|++||+.+++... ...+. .+...+..++|+|||++|+++..++ .|++|++..+.
T Consensus 225 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-------~i~iw~~~~~~ 289 (379)
T 3jrp_A 225 ASVSQ---DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-------KVTLWKENLEG 289 (379)
T ss_dssp EEEET---TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS-------SEEEEEEEETT
T ss_pred EEEeC---CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC-------cEEEEeCCCCC
Confidence 88876 6789999998774211 12222 2455678899999999999988875 78889887443
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=3e-14 Score=148.47 Aligned_cols=278 Identities=10% Similarity=0.021 Sum_probs=163.9
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeE
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL 403 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~ 403 (721)
.+++++ +++.++.. . .+..|++||+++++........ .......++|+|||+.+++..... ..++
T Consensus 4 g~~~~~-~~~~~v~~-~----~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~--------~~i~ 68 (349)
T 1jmx_B 4 GPALKA-GHEYMIVT-N----YPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHY--------GDIY 68 (349)
T ss_dssp CCCCCT-TCEEEEEE-E----TTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTT--------TEEE
T ss_pred cccccC-CCEEEEEe-C----CCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCC--------CcEE
Confidence 345666 66654442 2 2345999999998754433221 111356789999999887765322 3577
Q ss_pred EEeccCCCCccee-cc-------cCCCCceeCcCCCEEEEEe-------------CCcEEEEECCCCceE----EEe-ec
Q 004971 404 LENIKSPLPDISL-FR-------FDGSFPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRR----QVY-FK 457 (721)
Q Consensus 404 ~~~~~~~~~~~~~-~~-------~~~~~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~----~l~-~~ 457 (721)
++++.++...... .. .....++|+|||++|++.. ...|++||+.+++.. ... ..
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 148 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 148 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence 7777654221111 11 1145679999999998885 489999999875432 222 34
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-C-----------------------CC
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-K-----------------------NN 513 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~-----------------------~~ 513 (721)
.+..++|+|||+ +++.. .. |+.++..+. .....+.... . ..
T Consensus 149 ~~~~~~~s~dg~-l~~~~---------~~--i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVAG---------PD--IYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp SCCCEEECTTSC-EEEES---------SS--EEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred cccceeECCCCc-EEEcc---------Cc--EEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 567788999999 66642 22 555555443 1223332221 0 01
Q ss_pred cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEe
Q 004971 514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
...++++|++....... +...++.++..+++..... +.........++||| ||++|++. .. .|++||
T Consensus 214 ~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dg~~l~~~--~~-------~v~~~d 281 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD--LLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKDPNQIYGV--LN-------RLAKYD 281 (349)
T ss_dssp EEEEEC-------CCCE--EEEEEEEEETTTCCEEEEE-EEECSSCEEEEEECSSCTTEEEEE--ES-------EEEEEE
T ss_pred eeeeecCCCcCCccccc--cceeEEEEeccCCcEEecc-cccCCCcceeeEecCCCCCEEEEE--cC-------eEEEEE
Confidence 11333444322211111 1223445788877732111 112233456789999 99998888 32 899999
Q ss_pred cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEec
Q 004971 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLT 662 (721)
Q Consensus 593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt 662 (721)
+.+++...... .......++|+|||++|++... .+ .|++||+++++. .++.
T Consensus 282 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~-~~----------------~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 282 LKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGT-FN----------------DLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESB-SS----------------EEEEEETTTTEEEEEEE
T ss_pred CccCeEEEEEc--CCCCccceEECCCCCEEEEecC-CC----------------eEEEEeccccceeeeee
Confidence 99988765554 2345678999999999887432 22 599999988764 3444
No 152
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.1e-15 Score=160.00 Aligned_cols=217 Identities=9% Similarity=-0.046 Sum_probs=154.7
Q ss_pred CCCceeCcCCCEEEEE--eCCcEEEEECC--CCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSD--GSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~--~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
...++|+|||++|+++ .++.|.+|++. +++..... ...+..+.|+|||+.|++++ .++.+.+|.
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~~g~v~~~~ 177 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-------KFGDVYSID 177 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TTSEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-------CCCcEEEEe
Confidence 3457899999997444 37889999998 76644332 35678999999999999986 356666665
Q ss_pred EEccCCCCcc-ceEEcccCCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceeeEEc
Q 004971 492 INVDDVDGVS-AVRRLTTNGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWS 566 (721)
Q Consensus 492 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~~~S 566 (721)
+..... .. ....+..+...+..++|+|| +++|+..+. +..|++||+.+++. +.. +..+...+..++|+
T Consensus 178 ~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 178 INSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR---DEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp TTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET---TSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC
T ss_pred cCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEEcC---CCcEEEEECCCCce--eeeeecCCCCceEEEEEC
Confidence 433221 00 11244455567788999999 888888876 67899999998874 444 44566678899999
Q ss_pred cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec------------------------CCCCCcCCeEECCCCCEE
Q 004971 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS------------------------GSAGRANHPYFSPDGKSI 622 (721)
Q Consensus 567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~------------------------~~~~~~~~~~~SpDG~~l 622 (721)
||++|+.++.+. .|++||+.+++....... .....+..+.|+|||++|
T Consensus 251 -d~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 251 -KDYLLLSAGGDD-------KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp -STTEEEEEESSS-------EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred -CCCEEEEEeCCC-------eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 999999998775 899999999876554431 012345678999999999
Q ss_pred EEEEecCCCcCCCCCCCCCCCCCccEEEEEc--CCC---C-eEEeccCCCCCCCceecCC
Q 004971 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKL--DGS---D-LKRLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~~---~-~~~lt~~~~~~~~~~~sp~ 676 (721)
++.+...+ .|++|++ ..+ + ...+..+ ..+...+|+|.
T Consensus 323 ~~~~~~d~----------------~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 323 AFFVEATK----------------CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEETTCS----------------EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEECCCC----------------eEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 88874433 4899998 443 2 2344444 55677899996
No 153
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.66 E-value=8.2e-14 Score=160.42 Aligned_cols=298 Identities=8% Similarity=0.012 Sum_probs=193.3
Q ss_pred cCCCCEEEEEEecCCCCeeeEEEEEC---CCC--ceEEeecc----cCCCC-cccCcEEc-CCCCEEEEEEeeCCCCCCC
Q 004971 329 PGNNKFIAVATRRPTSSYRHIELFDL---VKN--KFIELTRF----VSPKT-HHLNPFIS-PDSSRVGYHKCRGGSTRED 397 (721)
Q Consensus 329 p~dG~~la~~~~~~g~~~~~l~l~dl---~tg--~~~~l~~~----~~~~~-~~~~~~~S-pdg~~l~~~~~~~~~~~~~ 397 (721)
+ +|++++|.....+.....+++.+. ..+ +.+.+... ..+.. ....+.|| |||++|+|.....+...
T Consensus 124 ~-~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~-- 200 (751)
T 2xe4_A 124 V-YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEV-- 200 (751)
T ss_dssp E-ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSC--
T ss_pred E-ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCce--
Confidence 6 899999987766655556777776 333 33333322 11121 45678999 99999999887654211
Q ss_pred CcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEeC------CcEEEEECCCCce--EEEee----cCceeeEE
Q 004971 398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVEF------PGVYVVNSDGSNR--RQVYF----KNAFSTVW 464 (721)
Q Consensus 398 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~~------~~l~v~d~~~g~~--~~l~~----~~~~~~~~ 464 (721)
..|++.++.++ .............++|||||+.|+|... ..|+++++.++.. +.+.. .....+.|
T Consensus 201 --~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 278 (751)
T 2xe4_A 201 --YTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK 278 (751)
T ss_dssp --EEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred --EEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence 46999998876 4211111122456899999999999842 3699999988752 34431 23456889
Q ss_pred cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce--EEcccCCCCCcceEEccC---CCEEEEEEeeC--CceeE
Q 004971 465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV--RRLTTNGKNNAFPSVSPD---GKWIVFRSTRT--GYKNL 537 (721)
Q Consensus 465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~SpD---g~~l~~~s~~~--g~~~l 537 (721)
||||++|++.+. ......||.++.++.. ... +.+.... ..+.|+|+ |++|++.++++ +..+|
T Consensus 279 SpDg~~l~~~~~------~~~~~~l~~~d~~~~~--~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L 347 (751)
T 2xe4_A 279 AADTNTLCIGSQ------SPETAEVHLLDLRKGN--AHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKL 347 (751)
T ss_dssp CTTSSEEEEEEE------CSSCEEEEEEESSSCT--TCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEE
T ss_pred CCCCCEEEEEec------CCCCceEEEEECCCCC--CCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEE
Confidence 999999999874 2346778888876530 123 5555433 23456666 99999999875 56799
Q ss_pred EEEECCCC-cccceEE-CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec-------CCCc-eEEeeecCCC
Q 004971 538 YIMDAEGG-EGYGLHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP-------NGTG-LRKLIQSGSA 607 (721)
Q Consensus 538 ~~~d~~~g-~~~~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~-------~~~~-~~~l~~~~~~ 607 (721)
++++++++ + ... +........-..+++++++|++..... +...|+++++ ++++ .+.+... ..
T Consensus 348 ~~~d~~~~~~---~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~----g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~ 419 (751)
T 2xe4_A 348 LIAPRGQPSD---WSHVLVDHSEDVFMESIAVRSNYLVVAGRRA----GLTRIWTMMADSQDGVFKAGTGLREVVME-EP 419 (751)
T ss_dssp EEEETTSTTC---CCCEEECCCSSEEEEEEEECSSEEEEEEEET----TEEEEEEEECCTTTSCCCTTTCCEECCCC-CS
T ss_pred EEEcCCCccc---ceeeEECCCCCcEEEEEEEECCEEEEEEEeC----CEEEEEEEecccccccccCCccceEECCC-Cc
Confidence 99999863 3 233 333333223345666788999988774 7789999996 5666 6666432 11
Q ss_pred CCcCCeEE----CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 608 GRANHPYF----SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 608 ~~~~~~~~----SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.....+.+ ++|++.|++....... ++.+|.+|+++++.+.|+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~ss~~~-------------P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 420 IFTVHLVESQMLEYEEPTFRMEYSSLAT-------------PNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp SCEEEECGGGCCCTTCSCEEEEEEETTE-------------EEEEEEECTTTCCEEEEEE
T ss_pred eeEEEeccCcccCCCCCEEEEEEeCCCC-------------CCEEEEEECCCCcEEEEec
Confidence 11122222 5688777776554433 3579999999888888875
No 154
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.65 E-value=1.4e-14 Score=151.70 Aligned_cols=273 Identities=9% Similarity=0.002 Sum_probs=176.9
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
..+...+..++||| ||++|+.... + .+.+||+.+++....... ..+....++++++.++++....
T Consensus 16 ~~h~~~V~~v~fs~-dg~~la~g~~-----~-~~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d---- 80 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-DQSCLILSTL-----K-SFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVK---- 80 (355)
T ss_dssp ---CCCCCEEEECT-TSSEEEEECS-----S-EEEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSST----
T ss_pred ccCCCceEEEEECC-CCCEEEEEcC-----C-EEEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCc----
Confidence 34555678899999 9998887432 1 278999887754332211 1345578889998887654332
Q ss_pred CCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC-ce-EEEeecCceeeEEcCCCCeEE
Q 004971 396 EDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS-NR-RQVYFKNAFSTVWDPVREAVV 472 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~-~~l~~~~~~~~~~spdg~~la 472 (721)
..+.+++...+..... ........+.++++ .++...++.|++||+.++ +. ..+.. ......+++ ..++
T Consensus 81 ----~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la 151 (355)
T 3vu4_A 81 ----EVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLV 151 (355)
T ss_dssp ----TEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEE
T ss_pred ----cEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEE
Confidence 2466677655421111 11222334566665 466667889999999877 32 22222 333456666 7787
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCC---Cc-------cc-eEEcccCCCCCcceEEccCCCEEEEEEeeCCcee-EEEE
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVD---GV-------SA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN-LYIM 540 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~-------~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~-l~~~ 540 (721)
+.+. ..++.+.||++...... .. .. ...+..+...+..++|+|||++|+..+. +.. |.+|
T Consensus 152 ~~sg-----~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~---d~~~v~iw 223 (355)
T 3vu4_A 152 YSNE-----FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ---DGTIIRVF 223 (355)
T ss_dssp EEES-----SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET---TCSEEEEE
T ss_pred EeCC-----CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC---CCCEEEEE
Confidence 7632 25788999988653200 00 01 4566777778889999999999999887 777 9999
Q ss_pred ECCCCcccceEECc-C-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee---------------
Q 004971 541 DAEGGEGYGLHRLT-E-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--------------- 603 (721)
Q Consensus 541 d~~~g~~~~~~~l~-~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------- 603 (721)
|+.+++. +..+. . +...+..++|+|||++|+.++.++ .|.+||+..+...+...
T Consensus 224 d~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 224 KTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp ETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETTC-------EEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred ECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-------EEEEEEccCCCCcccccccceeeccccccccc
Confidence 9998875 55565 2 566788999999999999998875 89999997653211100
Q ss_pred -------cCCCCCcCCeEECCCCCEEEEEEecC
Q 004971 604 -------SGSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 604 -------~~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.........++|++||+.|+....++
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 00111125689999999998876654
No 155
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.65 E-value=2.2e-14 Score=148.91 Aligned_cols=248 Identities=10% Similarity=0.014 Sum_probs=171.1
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc------eecccCCCCceeCc--CCCEEEEEe
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI------SLFRFDGSFPSFSP--KGDRIAFVE 437 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~Sp--DG~~la~~~ 437 (721)
.+|...+..++|+|+|+.|+....++. +.++++....... .........++|+| |++.|+..+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQH---------IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSE---------EEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCe---------EEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 346677888999999999988765544 5555555432111 11223344578999 699988885
Q ss_pred -CCcEEEEECCCCc----------eEEEe--ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc-
Q 004971 438 -FPGVYVVNSDGSN----------RRQVY--FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVS- 501 (721)
Q Consensus 438 -~~~l~v~d~~~g~----------~~~l~--~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 501 (721)
++.|.+||+.+++ ...+. ...+..+.|+|+ ++.|+.++ .++.+.+|++.........
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG-------NDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTCEEEEEECSSTTCTTCCE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec-------CCCcEEEecCCChHHhcccc
Confidence 7889999998763 12222 456789999999 99999886 5788999987654320000
Q ss_pred ---ceEEcc----cCCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC--
Q 004971 502 ---AVRRLT----TNGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-- 569 (721)
Q Consensus 502 ---~~~~l~----~~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG-- 569 (721)
....+. .+...+..++|+|+ ++.|++.+. +..+..++...++...+..+..+...+..++|+|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecC---CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 000010 22345677899998 888888876 667777777766644455566667778899999998
Q ss_pred --CEEEEEEccCCCCCCceeEEEEecCCCc----------------------------------------------eEEe
Q 004971 570 --EWIAFASDRDNPGSGSFEMYLIHPNGTG----------------------------------------------LRKL 601 (721)
Q Consensus 570 --~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------------------------------------------~~~l 601 (721)
+.|+.++.++ .|++||+..+. ....
T Consensus 229 ~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 229 WYQLIATGCKDG-------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp SSEEEEEEETTS-------CEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred cceEEEEEcCCC-------eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 7788877765 79999987641 1111
Q ss_pred eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 602 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
. .++...+..++|+|||++|+..+.++ .|.+|++..++
T Consensus 302 ~-~~h~~~v~~~~~s~~~~~l~s~~~dg-----------------~v~iw~~~~~~ 339 (351)
T 3f3f_A 302 H-DDHNGEVWSVSWNLTGTILSSAGDDG-----------------KVRLWKATYSN 339 (351)
T ss_dssp E-CTTSSCEEEEEECSSSCCEEEEETTS-----------------CEEEEEECTTS
T ss_pred E-ecccccEEEEEEcCCCCEEEEecCCC-----------------cEEEEecCcCc
Confidence 1 23567788999999999998887665 38999988764
No 156
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-14 Score=148.98 Aligned_cols=271 Identities=8% Similarity=-0.030 Sum_probs=179.2
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL 351 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l 351 (721)
.+| ++++++++ ...++.+.+|.+.... ....+..+...+..++|+| ++++|+... .+..|.+
T Consensus 24 ~~~-~~~~~l~s--~~~dg~v~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~dg~i~~ 85 (313)
T 3odt_A 24 VVA-VDDSKVAS--VSRDGTVRLWSKDDQW---------LGTVVYTGQGFLNSVCYDS-EKELLLFGG-----KDTMING 85 (313)
T ss_dssp EEE-EETTEEEE--EETTSEEEEEEESSSE---------EEEEEEECSSCEEEEEEET-TTTEEEEEE-----TTSCEEE
T ss_pred EEe-cCCCEEEE--EEcCCcEEEEECCCCE---------EEEEeecCCccEEEEEECC-CCCEEEEec-----CCCeEEE
Confidence 367 77766553 3347899999763222 3344445566778899999 999988854 3345999
Q ss_pred EECCCCce-EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc-C
Q 004971 352 FDLVKNKF-IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP-K 429 (721)
Q Consensus 352 ~dl~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp-D 429 (721)
|++..... ..+.....+...+..+.| +++.|+....++. +.+++.......+.........+.|+| +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~---------i~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT---------AKVWKEGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE---------EEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC---------EEEEcCCcEEEecccCCCceeEEEEccCC
Confidence 99876531 123333445666666777 5778777655443 444442111111111122233457777 8
Q ss_pred CCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 430 GDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 430 G~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
++.++... ++.|.+||... ....+. ...+..+.|+|+++ ++..+ .++.+.+|++.... ....
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-------~dg~i~i~d~~~~~-----~~~~ 220 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK-VIKTFSGIHNDVVRHLAVVDDGH-FISCS-------NDGLIKLVDMHTGD-----VLRT 220 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE-EEEEECSSCSSCEEEEEEEETTE-EEEEE-------TTSEEEEEETTTCC-----EEEE
T ss_pred CCEEEEEECCCCEEEEecCc-eEEEEeccCcccEEEEEEcCCCe-EEEcc-------CCCeEEEEECCchh-----hhhh
Confidence 88888875 78999999322 122222 45678899999998 66554 56788888875432 5566
Q ss_pred cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585 (721)
Q Consensus 506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 585 (721)
+..+...+..++|+|||+ |+..+. +..|++||+.+++. +..+..+...+..++|+|||+ ++.+..++
T Consensus 221 ~~~~~~~i~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg------ 287 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNGD-IVSCGE---DRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDN------ 287 (313)
T ss_dssp EECCSSCEEEEEECTTSC-EEEEET---TSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTS------
T ss_pred hhcCCceEEEEEEecCCC-EEEEec---CCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCC------
Confidence 666777888899999994 666665 78899999998875 555555566778999999998 55566554
Q ss_pred eeEEEEecCCCceE
Q 004971 586 FEMYLIHPNGTGLR 599 (721)
Q Consensus 586 ~~i~~~d~~~~~~~ 599 (721)
.|++|++.+++..
T Consensus 288 -~i~iw~~~~~~~~ 300 (313)
T 3odt_A 288 -LVRIFSQEKSRWA 300 (313)
T ss_dssp -CEEEEESCGGGCC
T ss_pred -cEEEEeCCCCcee
Confidence 8999999887543
No 157
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.64 E-value=1.5e-14 Score=150.24 Aligned_cols=267 Identities=11% Similarity=-0.021 Sum_probs=183.9
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeE
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHI 349 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l 349 (721)
..+|+||++++++ ...++.+.+|.+...... .....+..+...+..++|+| +++ +|+... .+..|
T Consensus 16 ~~~~s~~~~~l~~--~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----~dg~i 81 (342)
T 1yfq_A 16 DIKIIPSKSLLLI--TSWDGSLTVYKFDIQAKN------VDLLQSLRYKHPLLCCNFID-NTDLQIYVGT-----VQGEI 81 (342)
T ss_dssp EEEEEGGGTEEEE--EETTSEEEEEEEETTTTE------EEEEEEEECSSCEEEEEEEE-SSSEEEEEEE-----TTSCE
T ss_pred EEEEcCCCCEEEE--EcCCCeEEEEEeCCCCcc------ccceeeeecCCceEEEEECC-CCCcEEEEEc-----CCCeE
Confidence 3479999886663 233788999976543311 01334445566778899999 999 888754 33459
Q ss_pred EEEEC-CCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC---------C--CCcceec
Q 004971 350 ELFDL-VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS---------P--LPDISLF 417 (721)
Q Consensus 350 ~l~dl-~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------~--~~~~~~~ 417 (721)
++||+ .+++...+.. ..+...+..+.|+| ++.|+....++. +.++++.. . ...+. .
T Consensus 82 ~~wd~~~~~~~~~~~~-~~~~~~v~~l~~~~-~~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTN-NEANLGICRICKYG-DDKLIAASWDGL---------IEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEECSSSSSSEEECBS-CCCCSCEEEEEEET-TTEEEEEETTSE---------EEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEeccCCceEeccc-cCCCCceEEEEeCC-CCEEEEEcCCCe---------EEEEcccccccccccccCCeeeEEe-e
Confidence 99999 8887644432 01567788899999 888887665443 55666543 2 11111 2
Q ss_pred ccCCCCceeCcCCCEEEEE-eCCcEEEEECCC-Cce--EEEe---ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEE
Q 004971 418 RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDG-SNR--RQVY---FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDI 489 (721)
Q Consensus 418 ~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~-g~~--~~l~---~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i 489 (721)
......++|+|++ ++.. .++.|.+||+.+ +.. .... ...+..+.|+| +++.++..+ .++.+.|
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-------~dg~i~i 220 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-------IDGRVAV 220 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-------TTSEEEE
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-------cCCcEEE
Confidence 2334457889887 5555 577999999987 542 2222 45678999999 999999887 5789999
Q ss_pred EEEEccCCC-CccceEEcccCCC---------CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-Cc
Q 004971 490 ISINVDDVD-GVSAVRRLTTNGK---------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PW 558 (721)
Q Consensus 490 ~~~~~~~~~-~~~~~~~l~~~~~---------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~ 558 (721)
|+++..+.. .......+..+.. .+..++|+|||++|+..+. +..|++||+.+++. +..+..+ ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~h~~ 295 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKK--IKNFAKFNED 295 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE--EEECCCCSSS
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhH--hhhhhcccCC
Confidence 999876100 0014455555432 6778899999999998886 67899999998875 6666665 66
Q ss_pred CceeeEEccCCCEEEEEEccC
Q 004971 559 SDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 559 ~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.+..++ |||++|++++.++
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECT
T ss_pred CceEec--CCCCeEEEEecCC
Confidence 666777 9999999998874
No 158
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.64 E-value=8.3e-14 Score=150.77 Aligned_cols=308 Identities=12% Similarity=0.113 Sum_probs=200.7
Q ss_pred eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971 273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF 352 (721)
Q Consensus 273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~ 352 (721)
+++++|+.+++ ...++.+.+|...... ....+..+...+..+.+ +++.++... .++.|.+|
T Consensus 124 ~~~~~g~~l~s--g~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~---~~~~l~s~~-----~dg~i~vw 184 (445)
T 2ovr_B 124 CLQFCGNRIVS--GSDDNTLKVWSAVTGK---------CLRTLVGHTGGVWSSQM---RDNIIISGS-----TDRTLKVW 184 (445)
T ss_dssp EEEEETTEEEE--EETTSCEEEEETTTCC---------EEEECCCCSSCEEEEEE---ETTEEEEEE-----TTSCEEEE
T ss_pred EEEEcCCEEEE--EECCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEe---cCCEEEEEe-----CCCeEEEE
Confidence 45566676663 3337899999543221 34455556656667777 456776643 34559999
Q ss_pred ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCE
Q 004971 353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432 (721)
Q Consensus 353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ 432 (721)
|+.+++.. .....+...+..+.|+ ++.|+....++. +.++++..+............-..++.+|+.
T Consensus 185 d~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~---------i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~ 251 (445)
T 2ovr_B 185 NAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDAT---------LRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 251 (445)
T ss_dssp ETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSE---------EEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred ECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCE---------EEEEECCCCcEEEEEcCCcccEEEEEECCCE
Confidence 99998743 3334556667667775 667777654443 6666665442211111111111233347888
Q ss_pred EEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 433 IAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 433 la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
++..+ ++.|.+||+.+++..... ...+..+.| +++.++..+ .++.+.+|++.... ....+..
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-------~d~~i~i~d~~~~~-----~~~~~~~ 317 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-------LDTSIRVWDVETGN-----CIHTLTG 317 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-------TTSCEEEEETTTCC-----EEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-------CCCeEEEEECCCCC-----EEEEEcC
Confidence 88775 788999999887754333 345666777 888988886 57889999876533 4455555
Q ss_pred CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC---CCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE---GPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585 (721)
Q Consensus 509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 585 (721)
+.... ..++++++.|+..+. +..|++||+.+++. +..+.. +...+..++|+ ++.|+.++.++
T Consensus 318 ~~~~v--~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg------ 382 (445)
T 2ovr_B 318 HQSLT--SGMELKDNILVSGNA---DSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG------ 382 (445)
T ss_dssp CCSCE--EEEEEETTEEEEEET---TSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTS------
T ss_pred CcccE--EEEEEeCCEEEEEeC---CCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC------
Confidence 54333 345567888888876 77899999998875 455543 44456667774 67888888775
Q ss_pred eeEEEEecCCCceEEeee----cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 586 FEMYLIHPNGTGLRKLIQ----SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.|++||+.+++...... ..+.+.+..++|+|+|..|+..+.++... ..|++||.+.
T Consensus 383 -~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~-------------~~l~v~df~~ 442 (445)
T 2ovr_B 383 -TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE-------------TKLLVLDFDV 442 (445)
T ss_dssp -EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC-------------CEEEEEECCC
T ss_pred -eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc-------------cEEEEEECCC
Confidence 89999999887655431 12456678899999999888877766421 2488898764
No 159
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.63 E-value=2.8e-14 Score=151.98 Aligned_cols=279 Identities=11% Similarity=0.007 Sum_probs=177.5
Q ss_pred cceecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEe-----------CCCCCcccCceeecCCCC-EEEE
Q 004971 271 WPCWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV-----------TPPGLHAFTPATSPGNNK-FIAV 337 (721)
Q Consensus 271 ~~~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~sp~dG~-~la~ 337 (721)
..+|+| |++++++ ...++.+.+|.+...... ..... ..+...+..++|+| ++. .++.
T Consensus 48 ~~~~s~~~~~~l~~--~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s 117 (408)
T 4a11_B 48 TLDIEPVEGRYMLS--GGSDGVIVLYDLENSSRQ-------SYYTCKAVCSIGRDHPDVHRYSVETVQWYP-HDTGMFTS 117 (408)
T ss_dssp EEEECTTTCCEEEE--EETTSCEEEEECCCCSSS-------SCEEECEEEEECTTCTTCCSSCEEEEEECT-TCTTCEEE
T ss_pred EEEEecCCCCEEEE--EcCCCeEEEEECCCCccc-------ceEeccccccccccccccCCCcEEEEEEcc-CCCcEEEE
Confidence 458999 8887764 333789999976543322 11111 12455678889999 654 5555
Q ss_pred EEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC---CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-
Q 004971 338 ATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD---SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD- 413 (721)
Q Consensus 338 ~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 413 (721)
.. .+..|.+||+.+++...... ....+....++|. +..++....++. +.++++..+...
T Consensus 118 ~~-----~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~d~~~~~~~~ 180 (408)
T 4a11_B 118 SS-----FDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPK---------VQLCDLKSGSCSH 180 (408)
T ss_dssp EE-----TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSS---------EEEEESSSSCCCE
T ss_pred Ee-----CCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCe---------EEEEeCCCcceee
Confidence 32 34569999999987554433 2445566778774 447776654443 666676554221
Q ss_pred -ceecccCCCCceeCcCCCE-EEEE-eCCcEEEEECCCCc--eEEE---------------e--ecCceeeEEcCCCCeE
Q 004971 414 -ISLFRFDGSFPSFSPKGDR-IAFV-EFPGVYVVNSDGSN--RRQV---------------Y--FKNAFSTVWDPVREAV 471 (721)
Q Consensus 414 -~~~~~~~~~~~~~SpDG~~-la~~-~~~~l~v~d~~~g~--~~~l---------------~--~~~~~~~~~spdg~~l 471 (721)
+.........++|+|++++ ++.. .++.|.+||+..+. ...+ . ...+..+.|+|+|+.|
T Consensus 181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 1112223445799999996 5555 37889999997654 2222 1 3457789999999999
Q ss_pred EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----CCCCcceE-EccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971 472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----GKNNAFPS-VSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546 (721)
Q Consensus 472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~~~~~~~-~SpDg~~l~~~s~~~g~~~l~~~d~~~g~ 546 (721)
+..+ .++.+.+|++.... ....+... ........ ....+..+++... +..|++||+.+++
T Consensus 261 ~~~~-------~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~ 325 (408)
T 4a11_B 261 LTVG-------TDNRMRLWNSSNGE-----NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGE 325 (408)
T ss_dssp EEEE-------TTSCEEEEETTTCC-----BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCC
T ss_pred EEec-------CCCeEEEEECCCCc-----cceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCc
Confidence 9886 56789999876533 11111111 11111122 2233445666655 6789999999888
Q ss_pred ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
. +..+..+...+..++|+|||+.|+.++.++ .|++|++.+++...
T Consensus 326 ~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-------~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 326 Q--ITMLKGHYKTVDCCVFQSNFQELYSGSRDC-------NILAWVPSLYEPVP 370 (408)
T ss_dssp E--EEEECCCSSCEEEEEEETTTTEEEEEETTS-------CEEEEEECC-----
T ss_pred c--eeeeccCCCeEEEEEEcCCCCEEEEECCCC-------eEEEEeCCCCCccC
Confidence 5 666666777788999999999999988875 89999998876543
No 160
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.62 E-value=1.5e-13 Score=148.84 Aligned_cols=306 Identities=11% Similarity=0.050 Sum_probs=193.8
Q ss_pred ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC--cceeccCCeEEEEeccCCCCcEEEEEEe
Q 004971 222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG--WPCWVDESTLFFHRKSEEDDWISVYKVI 298 (721)
Q Consensus 222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~ 298 (721)
.++++|++|+.++.+ ..|.+|++.+++........ +. ...|+ +.++++ ...++.+.+|.+.
T Consensus 124 ~~~~~g~~l~sg~~d------------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s--~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD------------NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIIS--GSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEETTEEEEEETT------------SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEE--EETTSCEEEEETT
T ss_pred EEEEcCCEEEEEECC------------CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEE--EeCCCeEEEEECC
Confidence 577789999987644 46999999888865543322 22 23555 344442 3337899999543
Q ss_pred cCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEc
Q 004971 299 LPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS 378 (721)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~S 378 (721)
... ....+..+...+..+.+ +++.++... .+..|.+||+.+++... ....+...+..+.+
T Consensus 188 ~~~---------~~~~~~~h~~~v~~~~~---~~~~l~s~s-----~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 188 TGE---------CIHTLYGHTSTVRCMHL---HEKRVVSGS-----RDATLRVWDIETGQCLH--VLMGHVAAVRCVQY- 247 (445)
T ss_dssp TTE---------EEEEECCCSSCEEEEEE---ETTEEEEEE-----TTSEEEEEESSSCCEEE--EEECCSSCEEEEEE-
T ss_pred cCc---------EEEEECCCCCcEEEEEe---cCCEEEEEe-----CCCEEEEEECCCCcEEE--EEcCCcccEEEEEE-
Confidence 221 34445555555566666 567777644 34569999999887433 33445566666666
Q ss_pred CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-e
Q 004971 379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-F 456 (721)
Q Consensus 379 pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~ 456 (721)
+++.|+....++. +.++++..+............-..+..+++.++..+ ++.|.+||+.+++..... .
T Consensus 248 -~~~~l~~~~~dg~---------i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 248 -DGRRVVSGAYDFM---------VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp -CSSCEEEEETTSC---------EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred -CCCEEEEEcCCCE---------EEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 7888887665554 555665443211111111111123334888888875 789999999888754433 2
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeCC
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
.......++++++.++..+ .++.+.+|++.... ....+.. +...+..++| ++++|+..+.
T Consensus 318 ~~~~v~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~--- 380 (445)
T 2ovr_B 318 HQSLTSGMELKDNILVSGN-------ADSTVKIWDIKTGQ-----CLQTLQGPNKHQSAVTCLQF--NKNFVITSSD--- 380 (445)
T ss_dssp CCSCEEEEEEETTEEEEEE-------TTSCEEEEETTTCC-----EEEEECSTTSCSSCEEEEEE--CSSEEEEEET---
T ss_pred CcccEEEEEEeCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEccCCCCCCCEEEEEE--CCCEEEEEeC---
Confidence 2222334455778888776 57889999875432 4455554 3344555566 5788888886
Q ss_pred ceeEEEEECCCCcccceEEC-----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 534 YKNLYIMDAEGGEGYGLHRL-----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+..|++||+.+++. +..+ ..+...+..++|+|+|..|++++.++ .....|++||.+.
T Consensus 381 dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg---~~~~~l~v~df~~ 442 (445)
T 2ovr_B 381 DGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG---TEETKLLVLDFDV 442 (445)
T ss_dssp TSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS---SSCCEEEEEECCC
T ss_pred CCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCC---CCccEEEEEECCC
Confidence 78999999998875 4444 23345578899999999998888774 1245699999865
No 161
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6e-15 Score=159.29 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=161.3
Q ss_pred CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC---CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK---NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t---g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+...+..++|+|.+|++|+... .++.|.+||+.+ +..........+...+..++|+|+++.|+....++.
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~- 134 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ- 134 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE-
T ss_pred CCCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE-
Confidence 44556778889984567777754 445699999876 431111111135677889999999999988766554
Q ss_pred CCCCCcceeEEEecc---CCCC-------cceecc-----cCC--CCc--eeCcCCCEEEEEe-CCcEEEEECCCCceEE
Q 004971 394 TREDGNNQLLLENIK---SPLP-------DISLFR-----FDG--SFP--SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ 453 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~---~~~~-------~~~~~~-----~~~--~~~--~~SpDG~~la~~~-~~~l~v~d~~~g~~~~ 453 (721)
+.++++. .+.. .+.... ... ..+ .+++|++.|+..+ ++.|.+||+.+++...
T Consensus 135 --------i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 135 --------IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp --------EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred --------EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 3344332 1100 000000 000 011 2678898888875 7899999998887543
Q ss_pred Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcce----EEccCCC
Q 004971 454 VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFP----SVSPDGK 523 (721)
Q Consensus 454 l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~----~~SpDg~ 523 (721)
.. ...+..++|+|+++.|+..+ .++.+.||++.... ....+. .+...+..+ .|+||++
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGT-------TRGIIDIWDIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEE-------TTSCEEEEETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEc-------CCCeEEEEEcCCcc-----EEEEEecCCCCceEEEEeccccCCCcc
Confidence 33 25678999999999999887 57889999876522 344443 333345556 5667888
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcC--------------------------CCcCceeeEEccCCCEEEEEEc
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--------------------------GPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--------------------------~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
+|+..+. +..|++||+.+++. +..+.. +...+..++|+ ++++|+.++.
T Consensus 275 ~l~s~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 275 IVVGGSS---KTFLTIWNFVKGHC--QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA 348 (437)
T ss_dssp EEEEEST---TEEEEEEETTTTEE--EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred EEEEEcC---CCcEEEEEcCCCcE--EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence 8887776 78899999998874 333321 22235667888 7788887777
Q ss_pred cCCCCCCceeEEEEecCCCceEEe
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
++ .|++||+.+++....
T Consensus 349 d~-------~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 349 TS-------SIVMFSLNELSSSKA 365 (437)
T ss_dssp GT-------EEEEEETTCGGGCEE
T ss_pred CC-------eEEEEECCCcccceE
Confidence 75 899999988875443
No 162
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3e-15 Score=161.70 Aligned_cols=275 Identities=10% Similarity=0.031 Sum_probs=182.4
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcce
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~ 401 (721)
...|+| +++.++... .|+.. ++ .+... ..|...+..++|+| +++.|+..+.++.
T Consensus 32 ~~~f~~-~~~~~~~~~-----------~w~~~-g~--~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~--------- 87 (437)
T 3gre_A 32 YKEFGP-IQEIVRSPN-----------MGNLR-GK--LIATLMENEPNSITSSAVSPGETPYLITGSDQGV--------- 87 (437)
T ss_dssp CGGGCC-CCCCCCCCC-----------GGGCC-CC--EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSE---------
T ss_pred hhhcCC-ccccccccc-----------ccccc-ce--EEeeeccCCCCceEEEEECCCCCCEEEEecCCce---------
Confidence 456788 888766521 35643 33 22223 45677888999999 9999988775554
Q ss_pred eEEEeccC---CC--C-cce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECC---CCceEEEe-ecCce---------
Q 004971 402 LLLENIKS---PL--P-DIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD---GSNRRQVY-FKNAF--------- 460 (721)
Q Consensus 402 l~~~~~~~---~~--~-~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~---~g~~~~l~-~~~~~--------- 460 (721)
+.++++.. +. . ... ........++|+|+++.|+..+ ++.|.+||+. .++..... ...+.
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 55555543 21 1 111 1233445689999999998885 7889999984 44432221 11222
Q ss_pred -----eeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCCCCcceEEccCCCEEEEEEee
Q 004971 461 -----STV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 461 -----~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
.+. ++++++.|+..+ .++.+.+|++.... ....+.. +...+..++|+|++++|+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~- 234 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALT-------NLSRVIIFDIRTLE-----RLQIIENSPRHGAVSSICIDEECCVLILGTT- 234 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCGGGCCEEEEEECTTSCEEEEEET-
T ss_pred ccCceEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCe-----eeEEEccCCCCCceEEEEECCCCCEEEEEcC-
Confidence 222 667898888886 57888998875533 4555655 4567888999999999998887
Q ss_pred CCceeEEEEECCCCcccceEECc-CCCcCceee----EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-
Q 004971 532 TGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMC----NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG- 605 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~----~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~- 605 (721)
+..|++||+.+++. +..+. .+...+..+ .|+||++.|+.++.++ .|++||+.+++........
T Consensus 235 --dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 235 --RGIIDIWDIRFNVL--IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-------FLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp --TSCEEEEETTTTEE--EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-------EEEEEETTTTEEEEEEESSS
T ss_pred --CCeEEEEEcCCccE--EEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-------cEEEEEcCCCcEEEEEEcCC
Confidence 78899999998774 44443 444456677 4556788888777664 8999999988765544320
Q ss_pred ------------------------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EE
Q 004971 606 ------------------------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KR 660 (721)
Q Consensus 606 ------------------------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~ 660 (721)
+...+..++|+ ++++|+..+.++ .|++||+.+++. ..
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-----------------~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-----------------SIVMFSLNELSSSKA 365 (437)
T ss_dssp SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-----------------EEEEEETTCGGGCEE
T ss_pred CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-----------------eEEEEECCCcccceE
Confidence 22335667888 677776655554 499999988764 45
Q ss_pred eccC
Q 004971 661 LTQN 664 (721)
Q Consensus 661 lt~~ 664 (721)
+..+
T Consensus 366 ~~~~ 369 (437)
T 3gre_A 366 VISP 369 (437)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5543
No 163
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.62 E-value=3.7e-14 Score=148.68 Aligned_cols=267 Identities=11% Similarity=0.033 Sum_probs=179.1
Q ss_pred cceeccC---CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCee
Q 004971 271 WPCWVDE---STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYR 347 (721)
Q Consensus 271 ~~~ws~d---g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~ 347 (721)
..+|+|+ |+++++ ...++.+.+|.+...... ....+..+...+..++|+| ++++|+... .+.
T Consensus 44 ~~~~~~~~~~g~~l~~--~~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~dg 108 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIA--GSWANDVRCWEVQDSGQT-------IPKAQQMHTGPVLDVCWSD-DGSKVFTAS-----CDK 108 (368)
T ss_dssp EEEECCTTSSSEEEEE--EETTSEEEEEEECTTSCE-------EEEEEEECSSCEEEEEECT-TSSEEEEEE-----TTS
T ss_pred EEEEcCCCCCceEEEE--ECCCCcEEEEEcCCCCce-------eEEEeccccCCEEEEEECc-CCCEEEEEc-----CCC
Confidence 3479998 576663 334789999976543321 2244555666788999999 999998754 345
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEE--cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCce
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFI--SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPS 425 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 425 (721)
.|.+||+.+++...+. .+...+..+.| +|+++.|+....++. +.++++..+.. +...........
T Consensus 109 ~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~---------i~vwd~~~~~~-~~~~~~~~~~~~ 175 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKT---------LKFWDTRSSNP-MMVLQLPERCYC 175 (368)
T ss_dssp EEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCEEEEEEETTSE---------EEEECSSCSSC-SEEEECSSCEEE
T ss_pred cEEEEEcCCCCceeec---cccCceEEEEEEeCCCCCEEEEccCCCc---------EEEEECCCCcE-EEEEecCCCceE
Confidence 6999999998755543 35677888899 999988887665443 67777665432 222222222233
Q ss_pred eCcCCCEEEEE-eCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCe----EEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 426 FSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREA----VVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 426 ~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~----la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
+.+.+..++.. .++.+.+|++......... ........+.++... ++..+ .++.+.+|+++..
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-------IEGRVAIHYINPP 248 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-------TTSEEEEEESSCS
T ss_pred EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-------CCCcEEEEecCCC
Confidence 44444455555 5788999999876533222 223344555554443 66665 5788999988654
Q ss_pred CCCCccceEEcccCCC------------CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 496 DVDGVSAVRRLTTNGK------------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 496 ~~~~~~~~~~l~~~~~------------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
.. ......+..+.. .+..++|+|||++|+..+. +..|++||+.+++. +..+..+...+..+
T Consensus 249 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 249 NP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS---DGRFSFWDKDARTK--LKTSEQLDQPISAC 321 (368)
T ss_dssp CH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE--EEECCCCSSCEEEE
T ss_pred Cc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---CCeEEEEECCCCcE--EEEecCCCCCceEE
Confidence 21 012333433332 4778899999999998887 78899999998875 66777767778999
Q ss_pred EEccCCCEEEEEEccC
Q 004971 564 NWSPDGEWIAFASDRD 579 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~ 579 (721)
+|+|||++|+.++.++
T Consensus 322 ~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYD 337 (368)
T ss_dssp EECTTSSCEEEEECCC
T ss_pred EECCCCCeEEEEeccc
Confidence 9999999999998764
No 164
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.61 E-value=3.5e-14 Score=147.35 Aligned_cols=251 Identities=12% Similarity=0.056 Sum_probs=171.0
Q ss_pred eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcC--CCCEEEEEEee
Q 004971 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISP--DSSRVGYHKCR 390 (721)
Q Consensus 315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~ 390 (721)
+..|...+..++|+| +|++|+... .++.|.+||+.++.. ..+.....+...+..++|+| |++.|+....+
T Consensus 7 ~~gH~~~v~~~~~~~-~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-YGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcccccceeEEEEcC-CCCEEEEee-----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 345666788999999 999988854 345699999987632 23444455677888999999 69999887765
Q ss_pred CCCCCCCCcceeEEEeccCCCC--------ccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCceEE---
Q 004971 391 GGSTREDGNNQLLLENIKSPLP--------DISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNRRQ--- 453 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~--------~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~~~--- 453 (721)
+. +.++++..+.. .+.. .......++|+|+ ++.|+..+ ++.|.+||+.+++...
T Consensus 81 g~---------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 81 KT---------VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp SC---------EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred Ce---------EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 55 45555544311 1111 1222345789999 99888885 7889999998765211
Q ss_pred ----Ee---------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971 454 ----VY---------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517 (721)
Q Consensus 454 ----l~---------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (721)
+. ...+..+.|+|+ ++.+++.+ .++.+ +|.....+. ......+..+...+..++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-------~~~~~-~~~~~~~~~--~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-------LEQAI-IYQRGKDGK--LHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-------TTEEE-EEEECTTSC--EEEEEECCCCCSCEEEEE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEec-------CCCcE-EEEccCCCc--eeeeeecCCCCcceeEEE
Confidence 10 235678999997 88888876 33444 443333221 112445555667788899
Q ss_pred EccCC----CEEEEEEeeCCceeEEEEECCCCcc--------------------------------------------cc
Q 004971 518 VSPDG----KWIVFRSTRTGYKNLYIMDAEGGEG--------------------------------------------YG 549 (721)
Q Consensus 518 ~SpDg----~~l~~~s~~~g~~~l~~~d~~~g~~--------------------------------------------~~ 549 (721)
|+|++ +.|+..+. +..|++||+.++.. ..
T Consensus 222 ~~p~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCK---DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp ECCCSSCSSEEEEEEET---TSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred ECCCCCCcceEEEEEcC---CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 99998 67777775 67899999876421 12
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
+..+..+...+..++|+|||+.|+.++.++ .|++|++.+++..+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-------~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDG-------KVRLWKATYSNEFK 342 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTS-------CEEEEEECTTSCEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCC-------cEEEEecCcCcchh
Confidence 334445566788999999999999999875 89999998875443
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=4.1e-13 Score=140.68 Aligned_cols=308 Identities=12% Similarity=0.073 Sum_probs=175.6
Q ss_pred CCCEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC-CCcceeEEEecc
Q 004971 331 NNKFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE-DGNNQLLLENIK 408 (721)
Q Consensus 331 dG~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~-~~~~~l~~~~~~ 408 (721)
++++++...... ...+..|++||.++++..... .. .... .+++||||++|+.+........+ .....+.++++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i--~~-g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV--PT-AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE--EC-CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe--cC-CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 777766543211 112457999999998754322 21 2233 78999999999987652110000 000235666665
Q ss_pred CCCC--cceec------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEE--EeecCceeeEEcCCCCeEEEEe
Q 004971 409 SPLP--DISLF------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQ--VYFKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 409 ~~~~--~~~~~------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~--l~~~~~~~~~~spdg~~la~~~ 475 (721)
+... .+... ......+++||||++|+... ...|.++|+++++... +.......+.+.|++...++..
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 4321 11111 11244679999999998874 4679999999886533 2222222244566664333332
Q ss_pred cCCCCCCCCCcEEEEEEEccCCCCccceEEc-----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971 476 GGPEFASESSEVDIISINVDDVDGVSAVRRL-----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550 (721)
Q Consensus 476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~ 550 (721)
. .++.+.++.++.++. ..... ...........++|||+.+++.+. ...++++|+.++.....
T Consensus 170 ~------~dg~~~~v~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~v~v~d~~~~~~~~~ 236 (361)
T 2oiz_A 170 C------GDGGLLTINLGEDGK----VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY---YGNVYSADFSGDEVKVD 236 (361)
T ss_dssp E------TTSSEEEEEECTTSS----EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT---TSEEEEEECSSSSCEEE
T ss_pred C------CCCcEEEEEECCCCc----EeeeccccceEcCCCCceEEEecccCCEEEEEeC---CCeEEEEEecCCCceec
Confidence 1 345555555543221 11011 111112334566899999888875 45799999976653212
Q ss_pred EECc--C------C--CcCceeeEEccCCCEEEEEEc-cCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971 551 HRLT--E------G--PWSDTMCNWSPDGEWIAFASD-RDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS 616 (721)
Q Consensus 551 ~~l~--~------~--~~~~~~~~~SpDG~~l~~~~~-~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S 616 (721)
..+. . + ......++|+|||+++++... +... ......|++||+.+++....... .. ...++||
T Consensus 237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~-p~~ia~s 313 (361)
T 2oiz_A 237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD-ALSMTID 313 (361)
T ss_dssp EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT-CCEEEEE
T ss_pred ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC-eeEEEEC
Confidence 2211 0 0 111124789999999888764 1100 01134899999999887665543 33 8899999
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--CeE-EeccCCCCCCCceecCC
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DLK-RLTQNSFEDGTPAWGPR 676 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~-~lt~~~~~~~~~~~sp~ 676 (721)
|||++|+.+. . + .|.+||++++ ++. ++...+......+++|+
T Consensus 314 pdg~~l~v~n-~-~----------------~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 314 QQRNLMLTLD-G-G----------------NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp TTTTEEEEEC-S-S----------------CEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CCCCEEEEeC-C-C----------------eEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 9999877554 3 2 3999999998 543 33333433345566664
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=2.4e-13 Score=141.55 Aligned_cols=287 Identities=13% Similarity=0.052 Sum_probs=162.1
Q ss_pred ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCC-CcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971 272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPG-LHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350 (721)
Q Consensus 272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~ 350 (721)
++++++++++++. ..++.+.+|.. ..+. ....+.... .....++|+| ||+++++... .+..|+
T Consensus 5 ~~~~~~~~~~v~~--~~~~~v~~~d~--~~~~-------~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~----~~~~i~ 68 (349)
T 1jmx_B 5 PALKAGHEYMIVT--NYPNNLHVVDV--ASDT-------VYKSCVMPDKFGPGTAMMAP-DNRTAYVLNN----HYGDIY 68 (349)
T ss_dssp CCCCTTCEEEEEE--ETTTEEEEEET--TTTE-------EEEEEECSSCCSSCEEEECT-TSSEEEEEET----TTTEEE
T ss_pred ccccCCCEEEEEe--CCCCeEEEEEC--CCCc-------EEEEEecCCCCCCceeEECC-CCCEEEEEeC----CCCcEE
Confidence 4667777777643 22566666632 2221 222222221 2456789999 9998777542 234599
Q ss_pred EEECCCCceEEeecccCC----CCcccCcEEcCCCCEEEEEEeeCCCC---CCCCcceeEEEeccCCC--Cccee--ccc
Q 004971 351 LFDLVKNKFIELTRFVSP----KTHHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPL--PDISL--FRF 419 (721)
Q Consensus 351 l~dl~tg~~~~l~~~~~~----~~~~~~~~~Spdg~~l~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~~~--~~~ 419 (721)
+||+++++.......... ......++|+|||++|++........ .......++++++.++. ..+.. ...
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 148 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 148 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence 999998875433221110 12256789999999999877540000 00001357778776531 11111 122
Q ss_pred CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC--------------------------ceeeEEcCCCCeEE
Q 004971 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN--------------------------AFSTVWDPVREAVV 472 (721)
Q Consensus 420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~--------------------------~~~~~~spdg~~la 472 (721)
....++|+|||+ +++ ....|++||+.+++..... .+. ...+.+++|+....
T Consensus 149 ~~~~~~~s~dg~-l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp SCCCEEECTTSC-EEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred cccceeECCCCc-EEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 334567999998 555 4556999999888755433 111 11233333332110
Q ss_pred EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549 (721)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~ 549 (721)
. .......++.++..++ ..+.+. ........++|+| ||++|++. ...|++||+.+++.
T Consensus 227 ~--------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~-- 287 (349)
T 1jmx_B 227 A--------TADLLYGYLSVDLKTG----KTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKL-- 287 (349)
T ss_dssp C--------CCEEEEEEEEEETTTC----CEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEE--
T ss_pred c--------ccccceeEEEEeccCC----cEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeE--
Confidence 0 0011122223444332 222222 2223556789999 99998877 35899999998874
Q ss_pred eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
+..+..+ .....++|+|||++|++...+ ..|++||+++++......
T Consensus 288 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~-------~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 288 IKAANLD-HTYYCVAFDKKGDKLYLGGTF-------NDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEEECS-SCCCEEEECSSSSCEEEESBS-------SEEEEEETTTTEEEEEEE
T ss_pred EEEEcCC-CCccceEECCCCCEEEEecCC-------CeEEEEeccccceeeeee
Confidence 3333322 334689999999999885443 389999999887655443
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=2.6e-13 Score=142.74 Aligned_cols=234 Identities=11% Similarity=0.060 Sum_probs=142.7
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECC-CCceEEEe--e--cCceeeEEcCCCCeE-EEEec-CCC--CCC----CCCcE
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQVY--F--KNAFSTVWDPVREAV-VYTSG-GPE--FAS----ESSEV 487 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l~--~--~~~~~~~~spdg~~l-a~~~~-~~~--~~~----~~~~~ 487 (721)
...++|||||++|+..+...+.+|+++ +++...+. . +....++|+|||++| +++.+ +.. +.. .++.+
T Consensus 42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 445789999999888765589999987 77655443 1 345678999999974 33332 000 000 35678
Q ss_pred EEEEEEccCCCCccceEEccc----CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECc--CCCcCc
Q 004971 488 DIISINVDDVDGVSAVRRLTT----NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLT--EGPWSD 560 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~--~~~~~~ 560 (721)
.+|.++.++. ....+.. .......++|||||++|++... +...|++|+++ +|+...+..+. .+....
T Consensus 122 ~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 122 NVFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp EEEEECTTCC----EEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred EEEccCCCCc----CcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 8898875542 2222321 2345677899999999876653 24689999998 77642222232 112345
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE----eeecCCC--C---------CcCCeE-ECCCCCEEEE
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK----LIQSGSA--G---------RANHPY-FSPDGKSIVF 624 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~--~---------~~~~~~-~SpDG~~l~~ 624 (721)
..++|||||++|++..... +...+|.++..+++... +...... + ....++ |||||++|+.
T Consensus 196 ~~~~~spdg~~l~v~~~~~----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAG----NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp EEEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CEeEECCCCCEEEEEECCC----CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 7889999999998887542 32344444554665431 2111011 1 355688 9999999976
Q ss_pred EEecCCCcCCCCCCCCCCCCCccEEEEEcC-CCCeEEe----ccCCCCCCCceecC
Q 004971 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLD-GSDLKRL----TQNSFEDGTPAWGP 675 (721)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l----t~~~~~~~~~~~sp 675 (721)
+...... ...+.|.+|+++ +++.+.+ ..........+|+|
T Consensus 272 ~~~~~~~-----------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 272 SSRANKF-----------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp EEEESST-----------TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred ECCCCCC-----------CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 6543320 001248888875 5666542 22333456788898
No 168
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5e-14 Score=146.84 Aligned_cols=261 Identities=10% Similarity=0.022 Sum_probs=163.2
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
.+.+ |+..++... .++.|++||+.+++...... ...+..+.++|+ ++..+.++....+.....+.+.
T Consensus 43 ~~~~-d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYY-DKWVCMCRC-----EDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSE-EEEEEEEEE-----ETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcC-CCCEEEEEC-----CCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 3455 777777644 44569999999887433221 233455667776 4443333221111111122223
Q ss_pred eccCCCCcceecc----cCCCCceeCc--CCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEE
Q 004971 406 NIKSPLPDISLFR----FDGSFPSFSP--KGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYT 474 (721)
Q Consensus 406 ~~~~~~~~~~~~~----~~~~~~~~Sp--DG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~ 474 (721)
++.... .+.... .....++|+| +|++++..+ ++.|.+||+.+++...+. ...+..++|+|||+.|+..
T Consensus 110 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 110 DSKTNK-VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp ETTTCC-EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred ecCCcc-eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 333321 011111 2244578999 999998875 789999999988875544 3357899999999999987
Q ss_pred ecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL 553 (721)
Q Consensus 475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l 553 (721)
+ .++.++||++..... ....+.. +...+..++|+|||++|+..++ + .|.+||+.+++. +..+
T Consensus 189 ~-------~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~---~-~v~iwd~~~~~~--~~~~ 251 (343)
T 3lrv_A 189 S-------PDGILDVYNLSSPDQ----ASSRFPVDEEAKIKEVKFADNGYWMVVECD---Q-TVVCFDLRKDVG--TLAY 251 (343)
T ss_dssp C-------TTSCEEEEESSCTTS----CCEECCCCTTSCEEEEEECTTSSEEEEEES---S-BEEEEETTSSTT--CBSS
T ss_pred c-------CCCEEEEEECCCCCC----CccEEeccCCCCEEEEEEeCCCCEEEEEeC---C-eEEEEEcCCCCc--ceee
Confidence 5 578999999876542 2256666 6678889999999999998884 3 899999998764 2223
Q ss_pred cC---CCcCce--eeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCce-EEeeecCCCCCcCCeEECC---CCCEEE
Q 004971 554 TE---GPWSDT--MCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANHPYFSP---DGKSIV 623 (721)
Q Consensus 554 ~~---~~~~~~--~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~Sp---DG~~l~ 623 (721)
.. +...+. .++|+|+|++|+.++. +. .|.+|++..+.. ... ..+..+.|++ +++.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-------~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-------SLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTT-------EEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCC-------cEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence 22 222222 4999999999998876 43 688887755431 111 1233456677 778887
Q ss_pred EEEecCC
Q 004971 624 FTSDYGG 630 (721)
Q Consensus 624 ~~~~~~~ 630 (721)
+.+.++.
T Consensus 319 ~~~~d~~ 325 (343)
T 3lrv_A 319 VVCGDGG 325 (343)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 7777653
No 169
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.4e-14 Score=165.56 Aligned_cols=249 Identities=11% Similarity=0.095 Sum_probs=171.4
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
..|...+..++|+| +|++|+... .++.|.+||+.++....+.....|...+..
T Consensus 6 ~gH~~~V~~l~~s~-dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~--------------------- 58 (753)
T 3jro_A 6 NAHNELIHDAVLDY-YGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWR--------------------- 58 (753)
T ss_dssp --CCCCEEEECCCS-SSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCCSSCEEE---------------------
T ss_pred ccCcceeEEEEECC-CCCeEEEEE-----CCCcEEEEecCCCCCccceeccCCcCceEE---------------------
Confidence 34555678899999 999888754 345699999875443333322223333333
Q ss_pred CCCcceeEEEeccCCCCcceecccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEEcCC
Q 004971 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV 467 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd 467 (721)
++|+|+ |+.|+..+ ++.|.+||+.+++...+. ...+..+.|+|+
T Consensus 59 ----------------------------l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~ 110 (753)
T 3jro_A 59 ----------------------------VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110 (753)
T ss_dssp ----------------------------EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred ----------------------------EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCC
Confidence 355554 55555553 556777777766522222 456788999999
Q ss_pred --CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-------------CCCEEEEEEeeC
Q 004971 468 --REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-------------DGKWIVFRSTRT 532 (721)
Q Consensus 468 --g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-------------Dg~~l~~~s~~~ 532 (721)
++.+++++ .++.+.+|++..... .....+..+...+..+.|+| |++.|++.+.
T Consensus 111 ~~~~~l~sgs-------~dg~I~vwdl~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-- 178 (753)
T 3jro_A 111 EYGPLLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-- 178 (753)
T ss_dssp GGCSEEEEEE-------TTSEEEEEECCSSSC---CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET--
T ss_pred CCCCEEEEEe-------CCCcEEEEEeecCCC---cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC--
Confidence 99999886 578999999876532 23445556667788899999 6899998887
Q ss_pred CceeEEEEECCCCcc--cceEECcCCCcCceeeEEccC---CCEEEEEEccCCCCCCceeEEEEecCCCceE---Ee-ee
Q 004971 533 GYKNLYIMDAEGGEG--YGLHRLTEGPWSDTMCNWSPD---GEWIAFASDRDNPGSGSFEMYLIHPNGTGLR---KL-IQ 603 (721)
Q Consensus 533 g~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l-~~ 603 (721)
+..|++||+.++.. .....+..+...+..++|+|+ |+.|+.++.++ .|++||+.+++.. .+ ..
T Consensus 179 -dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-------~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 179 -DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-------TCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp -TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-------CEEEEEESSSSSCCBCCBSSS
T ss_pred -CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-------EEEEecCCCCCCcceeEEecc
Confidence 77899999987642 123445566677889999999 88888888775 7999999876421 11 11
Q ss_pred cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
..+...+..++|+|||++|+..+.++ .|++|++..+
T Consensus 251 ~~~~~~v~~l~~spdg~~l~s~s~Dg-----------------~I~vwd~~~~ 286 (753)
T 3jro_A 251 EKFPDVLWRASWSLSGNVLALSGGDN-----------------KVTLWKENLE 286 (753)
T ss_dssp SCCSSCCCCEEECTTTCCEEEECSSS-----------------CEECCBCCSS
T ss_pred CCCCCceEEEEEcCCCCEEEEEcCCC-----------------EEEEEecCCC
Confidence 12556778899999999998776654 3888887743
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=6.8e-13 Score=139.01 Aligned_cols=265 Identities=10% Similarity=0.048 Sum_probs=157.3
Q ss_pred CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C---CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S---PKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~---~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
.+++|| ||++++..... .+..+..|.+||+.+++........ . .......+++||||++|+.......
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~-- 130 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA-- 130 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS--
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC--
Confidence 789999 99998876531 2334567999999987753322111 0 1234567899999999998765433
Q ss_pred CCCCcceeEEEeccCCCCccee-cccCCC-CceeCcCCCE-EE-EEeCCcEEEEECCC-CceE-EE-----e--ecCcee
Q 004971 395 REDGNNQLLLENIKSPLPDISL-FRFDGS-FPSFSPKGDR-IA-FVEFPGVYVVNSDG-SNRR-QV-----Y--FKNAFS 461 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~SpDG~~-la-~~~~~~l~v~d~~~-g~~~-~l-----~--~~~~~~ 461 (721)
..+.++++.... .+.. ...... ...+.|++.. ++ +..++.+..++++. ++.. .. . ......
T Consensus 131 -----~~v~v~d~~~~~-~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 131 -----TSIGIVDVAKGD-YVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF 204 (361)
T ss_dssp -----EEEEEEETTTTE-EEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred -----CeEEEEECCCCc-EEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence 356777776542 1111 111111 1235565532 22 22455666666643 4332 11 1 112223
Q ss_pred eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--c-----C---CCCCcceEEccCCCEEEEEEee
Q 004971 462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--T-----N---GKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~-----~---~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
..++||++.+++.+ .++. ++.++...... .....+. . . ......++++||++++++....
T Consensus 205 ~~~~~~g~~~~~~~-------~~~~--v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 205 IAPALDKDKAHFVS-------YYGN--VYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCCEECSSEEEEEB-------TTSE--EEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EEecccCCEEEEEe-------CCCe--EEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 45578888888876 2344 44455433200 0011111 0 0 1122347999999999887641
Q ss_pred C--------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC--ceEEe
Q 004971 532 T--------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT--GLRKL 601 (721)
Q Consensus 532 ~--------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l 601 (721)
+ ....|++||+++++. +..+..+. ...++|||||++|+.+.. . .|.+||++++ +....
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~-------~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-G-------NVNVYDISQPEPKLLRT 342 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-S-------CEEEEECSSSSCEEEEE
T ss_pred CCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-C-------eEEEEECCCCcceeeEE
Confidence 1 235899999999875 66666554 689999999998776654 3 8999999998 54443
Q ss_pred eecCCCCCcCCeEECCCCC
Q 004971 602 IQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 602 ~~~~~~~~~~~~~~SpDG~ 620 (721)
.. ........++++|||+
T Consensus 343 i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 IE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp ET-TSCSSEEEEEECCCSC
T ss_pred ec-cCCCCcEEEEecCCCC
Confidence 21 2445667899999997
No 171
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.58 E-value=1.1e-13 Score=139.80 Aligned_cols=230 Identities=10% Similarity=0.124 Sum_probs=171.1
Q ss_pred cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe---------------C
Q 004971 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE---------------F 438 (721)
Q Consensus 375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~---------------~ 438 (721)
-.++.+|++|+|....+. ..|+..+..+... .+.. ...--++++|.+|+|+. .
T Consensus 19 g~~~~~g~~iy~~n~~d~-------~~ly~~~~dg~~~~~l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 19 GLFCESDGEVFFSNTNDN-------GRLYAMNIDGSNIHKLSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp TCEEEETTEEEEEEGGGT-------TEEEEEETTSCSCEEEEE----EEEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred eEEEEeCCEEEEEeCCCC-------ceEEEEcCCCCCCEEccC----CceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 346778999999765444 5788888766532 2221 11235689999999993 2
Q ss_pred CcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE
Q 004971 439 PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 518 (721)
..|+.+++++++.+.|.... ...|+++|++|+|+.. ...+...||.++.++. ..++|+.+.. +++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~--~~~~s~~g~~Iy~~~~-----~~~~~~~Iy~~~~dGs----~~~~lt~~~~----~~~ 152 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP--CIYASLIGNYIYYLHY-----DTQTATSLYRIRIDGE----EKKKIKNHYL----FTC 152 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC--EEEEEEETTEEEEEEE-----SSSSCEEEEEEETTSC----CCEEEESSCC----CCS
T ss_pred CeEEEEeCCCCcceEeecCC--ccEEEEeCCEEEEEee-----cCCCCceEEEEECCCC----CeEEEeCCCc----eEe
Confidence 46999999999888887432 2378999999999851 1246788999999886 6777877643 567
Q ss_pred ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
+|+|++|+|.+. +..+||+++++++. .+.+..+.. ..+ ++|+|++|+++.... + ..|++.+++++..
T Consensus 153 ~~~g~~iy~t~~--g~~~Iy~~~l~g~~---~~~l~~~~~--~~~-~~P~g~~iy~t~~~~----~-~~I~~~~ldG~~~ 219 (302)
T 3s25_A 153 NTSDRYFYYNNP--KNGQLYRYDTASQS---EALFYDCNC--YKP-VVLDDTNVYYMDVNR----D-NAIVHVNINNPNP 219 (302)
T ss_dssp EEETTEEEEECT--TTCCEEEEETTTTE---EEEEECSCE--EEE-EEEETTEEEEEEGGG----T-TEEEEECSSSCCC
T ss_pred eEECCEEEEEeC--CCceEEEEECCCCC---EEEEeCCCc--cce-eeecCCEEEEEEcCC----C-cEEEEEECCCCCe
Confidence 999999999976 57799999999877 445544332 233 569999999998753 2 5899999999988
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
+.|+.. . .+.|+|+|++|+|.+.... ..|+.++++|...++|+..
T Consensus 220 ~~Lt~~----~--~~~~~~~g~~Iy~~~~~~~---------------~~i~~~~~DG~~r~~l~~~ 264 (302)
T 3s25_A 220 VVLTEA----N--IEHYNVYGSLIFYQRGGDN---------------PALCVVKNDGTGFKELAKG 264 (302)
T ss_dssp EECSCS----C--EEEEEEETTEEEEEECSSS---------------CEEEEEETTSCCCEEEEES
T ss_pred EEEeCC----C--cceEEECCCEEEEEECCCC---------------cEEEEEECCCCccEEeeCC
Confidence 877632 1 2679999999998765443 2599999999988888863
No 172
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.57 E-value=4.3e-13 Score=144.44 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=159.0
Q ss_pred CCCCcccCcEEcCCCC-EEEEEEeeCCCCCCCCcceeEEEeccCC---------CCc---ceecccCCCCceeCcCCC-E
Q 004971 367 SPKTHHLNPFISPDSS-RVGYHKCRGGSTREDGNNQLLLENIKSP---------LPD---ISLFRFDGSFPSFSPKGD-R 432 (721)
Q Consensus 367 ~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~---~~~~~~~~~~~~~SpDG~-~ 432 (721)
.+...+..++|+|++. .|+....++ .+.++++... ... +......+..++|+|+++ .
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg---------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSS---------DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSS---------CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCC---------cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 3466788899999854 444433333 3566665431 111 122233456789999998 7
Q ss_pred EEEEe-CCcEEEEECCCCce--------EEEe--ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 433 IAFVE-FPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 433 la~~~-~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
|+... ++.|.+|++..+.. ..+. ...+..+.|+|+ +..++..+ .++.+.+|++..... .
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~-------~dg~i~i~d~~~~~~--~ 267 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA-------DDQKLMIWDTRNNNT--S 267 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEETTCSCS--S
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe-------CCCeEEEEECCCCCC--C
Confidence 77764 78999999987321 1222 456788999995 44555554 578899998875421 0
Q ss_pred cceEEcccCCCCCcceEEccCCCEE-EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE-EEEEEcc
Q 004971 501 SAVRRLTTNGKNNAFPSVSPDGKWI-VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW-IAFASDR 578 (721)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~SpDg~~l-~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~-l~~~~~~ 578 (721)
.....+..+...+..++|+|+++++ +..+. +..|.+||+.+... .+..+..+...+..+.|+|+++. |+.++.+
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence 1344555666678889999999864 44554 67899999987331 25556566677889999999975 5555555
Q ss_pred CCCCCCceeEEEEecCCC--------------ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971 579 DNPGSGSFEMYLIHPNGT--------------GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~--------------~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
+ .|.+||+... +..... .++...+..++|+|++++++++...++
T Consensus 344 ~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg-------------- 401 (430)
T 2xyi_A 344 R-------RLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDN-------------- 401 (430)
T ss_dssp S-------CCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTS--------------
T ss_pred C-------cEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCC--------------
Confidence 3 7999998762 222222 235667889999999995444444443
Q ss_pred CccEEEEEcCCC
Q 004971 645 YGEIFKIKLDGS 656 (721)
Q Consensus 645 ~~~l~~~d~~~~ 656 (721)
.|.+|++..+
T Consensus 402 --~i~iw~~~~~ 411 (430)
T 2xyi_A 402 --IMQVWQMAEN 411 (430)
T ss_dssp --EEEEEEECHH
T ss_pred --CEEEeEcccc
Confidence 3888887654
No 173
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.1e-11 Score=129.99 Aligned_cols=294 Identities=11% Similarity=0.043 Sum_probs=171.5
Q ss_pred eecCCCCEEEEEEecCCCCee-eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcceeE
Q 004971 327 TSPGNNKFIAVATRRPTSSYR-HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQLL 403 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~-~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~l~ 403 (721)
.+| |+++++.. +..+.... .|.++|.++++.... ... +... .+++||||++|+++....... +.. ...+.
T Consensus 28 ~~~-~~~~~yv~-~~~~~~~~~~v~v~D~~t~~~~~~--i~~-g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~-~~~v~ 100 (373)
T 2mad_H 28 PGA-DGRRSYIN-LPAHHSAIIQQWVLDAGSGSILGH--VNG-GFLP-NPVAAHSGSEFALASTSFSRIAKGKR-TDYVE 100 (373)
T ss_pred CCC-CCCEEEEe-CCcccCCccEEEEEECCCCeEEEE--ecC-CCCC-CeEECCCCCEEEEEeccccccccCCC-CCeEE
Confidence 457 88765553 32111111 689999999874322 211 2233 899999999999876421100 000 03355
Q ss_pred EEeccCCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE-eecCceeeEEcCCCCe
Q 004971 404 LENIKSPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV-YFKNAFSTVWDPVREA 470 (721)
Q Consensus 404 ~~~~~~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l-~~~~~~~~~~spdg~~ 470 (721)
+.+..+... .+... ......++|||||++|++.+ ...|.++| ++++.... .. ....+.+.|+++.
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~ 178 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPS 178 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCceEEEEeCCCc
Confidence 666543211 11111 11244679999999999884 36799999 98876433 31 1122556677766
Q ss_pred EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-----cCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-----TNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-----~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
.++... .++++.++.. .+. ...... ... .....+.+++++..+++.+. ...++++|..+
T Consensus 179 ~~~~~~------~dg~~~~vd~--~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~v~vid~~~ 243 (373)
T 2mad_H 179 TFYLLC------AQGGLAKTDH--AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISA 243 (373)
T ss_pred eEEEEc------CCCCEEEEEC--CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcC---CceEEEEeccC
Confidence 655442 3455444444 221 111111 111 11234678899888888875 56899999986
Q ss_pred CcccceEECcC----------CCcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971 545 GEGYGLHRLTE----------GPWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611 (721)
Q Consensus 545 g~~~~~~~l~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 611 (721)
+....+..+.. .+.....+.++|||++|++....... ......|+++|+++++...-.. ......
T Consensus 244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~~p~ 321 (373)
T 2mad_H 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVD 321 (373)
T ss_pred CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCCCcC
Confidence 64322222210 01112337889999999887653110 0123479999999988754443 344688
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
.++|||||++++|..+... ..|+++|++++++...
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~---------------~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGT---------------EVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEECCCCCeEEEEEcCCC---------------CeEEEEECCCCCEEee
Confidence 9999999996556655322 1599999999887644
No 174
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.55 E-value=4.8e-13 Score=144.28 Aligned_cols=262 Identities=12% Similarity=0.042 Sum_probs=174.6
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE 405 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~ 405 (721)
++++ ||++|+... .++.|.+||+.+++.... ...+...+..+.| +++.|+....++. +.++
T Consensus 138 ~~~~-d~~~l~~g~-----~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~~~l~sg~~dg~---------i~vw 198 (435)
T 1p22_A 138 CLQY-DDQKIVSGL-----RDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSDST---------VRVW 198 (435)
T ss_dssp EEEC-CSSEEEEEE-----SSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETTSC---------EEEE
T ss_pred EEEE-CCCEEEEEe-----CCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CCCEEEEEcCCCe---------EEEE
Confidence 5667 999988854 345599999998874433 3455666666666 7888888765554 5666
Q ss_pred eccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE---EEe---ecCceeeEEcCCCCeEEEEec
Q 004971 406 NIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR---QVY---FKNAFSTVWDPVREAVVYTSG 476 (721)
Q Consensus 406 ~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~---~l~---~~~~~~~~~spdg~~la~~~~ 476 (721)
++..+...... .......+.|+ +..++..+ ++.|.+||+.++... ... ...+..+.| +++.|+.++
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~- 273 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS- 273 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence 66554221111 11122234555 45677664 789999999877643 222 345566666 888998886
Q ss_pred CCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC
Q 004971 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG 556 (721)
Q Consensus 477 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~ 556 (721)
.++.+.+|++.... ....+..+...+..+.| +++.|+..+. +..|++||+.+++. +..+..+
T Consensus 274 ------~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~h 335 (435)
T 1p22_A 274 ------GDRTIKVWNTSTCE-----FVRTLNGHKRGIACLQY--RDRLVVSGSS---DNTIRLWDIECGAC--LRVLEGH 335 (435)
T ss_dssp ------TTSEEEEEETTTCC-----EEEEEECCSSCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCE--EEEECCC
T ss_pred ------CCCeEEEEECCcCc-----EEEEEcCCCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCE--EEEEeCC
Confidence 57889998875532 55566666555555566 6788888886 78899999998875 5666666
Q ss_pred CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc---------eEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG---------LRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
...+..++| |++.|+.++.++ .|.+||+.+++ ...... .+...+..++| ||++|+..+.
T Consensus 336 ~~~v~~~~~--~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 336 EELVRCIRF--DNKRIVSGAYDG-------KIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTS-------CEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCS
T ss_pred cCcEEEEEe--cCCEEEEEeCCC-------cEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeC
Confidence 666677777 889999988875 89999986654 333332 36778888888 7888877665
Q ss_pred cCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
++ .|.+||+.+...
T Consensus 404 Dg-----------------~i~iwd~~~~~~ 417 (435)
T 1p22_A 404 DD-----------------TILIWDFLNDPA 417 (435)
T ss_dssp SS-----------------EEEEEC------
T ss_pred CC-----------------EEEEEECCCCCC
Confidence 54 499999877644
No 175
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=1.4e-11 Score=127.49 Aligned_cols=309 Identities=14% Similarity=0.121 Sum_probs=179.1
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC-CCCCCcceeEE
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-TREDGNNQLLL 404 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~~~~~~~~l~~ 404 (721)
...| |+++++............|.++|.++++....... +... .+++||||++++.+...... ..-.....+.+
T Consensus 39 ~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v---G~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC---CCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 4468 99988776543111235799999999874332221 2223 39999999999887631000 00000023666
Q ss_pred EeccCCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-e--------cCceee
Q 004971 405 ENIKSPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-F--------KNAFST 462 (721)
Q Consensus 405 ~~~~~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~--------~~~~~~ 462 (721)
+|..+... .+... ......+++||||+++++.+ .+.|.++|+.+++.. .|. . +....+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~ 193 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 193 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeE
Confidence 66655421 11111 11344579999999988874 467999999998743 343 1 112234
Q ss_pred EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEc-cCCCEEEEEEeeCCceeEEEE
Q 004971 463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVS-PDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~ 540 (721)
..++||+.+++... ..+++. .... ..+.... .....+.|. +||+ ++|.+. ..++|++
T Consensus 194 ~~~~DG~~~~v~~~------~~g~v~--~~~~---------~~~~~~~~~~~~~~~~~~~dG~-~~~vs~---~g~V~v~ 252 (386)
T 3sjl_D 194 MHCRDGSLAKVAFG------TEGTPE--ITHT---------EVFHPEDEFLINHPAYSQKAGR-LVWPTY---TGKIHQI 252 (386)
T ss_dssp EEETTSCEEEEECC------SSSCCE--EEEC---------CCCSCTTSCBCSCCEEETTTTE-EEEEBT---TSEEEEE
T ss_pred EECCCCCEEEEECC------CCCeEE--Eeec---------ceeccccccccccceeEcCCCc-EEEEeC---CCEEEEE
Confidence 67788877766642 112221 1000 0011111 112235775 7875 555665 5689999
Q ss_pred ECCCCcccceEECc--------CC--CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCC
Q 004971 541 DAEGGEGYGLHRLT--------EG--PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSA 607 (721)
Q Consensus 541 d~~~g~~~~~~~l~--------~~--~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~ 607 (721)
|..++..+....+. .+ ......++++||+++|++...+... ......|+++|+.+++..+-... .
T Consensus 253 d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--g 330 (386)
T 3sjl_D 253 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--G 330 (386)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--E
T ss_pred ECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--C
Confidence 99876532222221 00 1122457889999999997653110 01246899999999987665542 3
Q ss_pred CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677 (721)
Q Consensus 608 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~ 677 (721)
.....+++||||+.++|..+... +.|.++|..++++..-....+......++++|
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~---------------~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d~ 385 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGD---------------KTLYIHDAESGEELRSVNQLGHGPQVITTADM 385 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTT---------------TEEEEEETTTCCEEEEECCCCSSCCEEEECCC
T ss_pred CCcceEEECCCCCeEEEEEcCCC---------------CeEEEEECCCCcEEEEecCCCCCceeEECCcC
Confidence 45778999999985555555432 25999999888765433334445667777763
No 176
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.55 E-value=9.9e-14 Score=142.74 Aligned_cols=238 Identities=9% Similarity=-0.005 Sum_probs=157.2
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC--CCEEEEEEecCCCCeee
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN--NKFIAVATRRPTSSYRH 348 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d--G~~la~~~~~~g~~~~~ 348 (721)
..+|++||+++++. ..++.+.||.+...... ....+..+...+..++|+| + |+.|+..+ .+..
T Consensus 18 ~v~~s~~g~~lasg--s~D~~v~lwd~~~~~~~-------~~~~l~gH~~~V~~v~~~~-~~~~~~l~s~s-----~D~~ 82 (316)
T 3bg1_A 18 DAQMDYYGTRLATC--SSDRSVKIFDVRNGGQI-------LIADLRGHEGPVWQVAWAH-PMYGNILASCS-----YDRK 82 (316)
T ss_dssp EEEECGGGCEEEEE--ETTTEEEEEEEETTEEE-------EEEEEECCSSCEEEEEECC-GGGSSCEEEEE-----TTSC
T ss_pred EeeEcCCCCEEEEE--eCCCeEEEEEecCCCcE-------EEEEEcCCCccEEEEEeCC-CCCCCEEEEEE-----CCCE
Confidence 34799999877743 34789999976533211 2344556766788899986 4 78777754 3456
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCCCCcceeEEEeccCCC-----CcceecccCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTREDGNNQLLLENIKSPL-----PDISLFRFDG 421 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~ 421 (721)
|++||+.+++...+.....+...+..++|+|+ |..|+..+.++. +.++++.... ..........
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~---------i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA---------ISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC---------EEEEEECSSSCEEECCBTTSSSSCB
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC---------EEEEecCCCCCcceeeeeccccCCc
Confidence 99999998754344444556777888999998 777777655554 4444444321 1111112234
Q ss_pred CCceeCcC-----------------CCEEEEEe-CCcEEEEECCCCc-eEEE---e--ecCceeeEEcCCC----CeEEE
Q 004971 422 SFPSFSPK-----------------GDRIAFVE-FPGVYVVNSDGSN-RRQV---Y--FKNAFSTVWDPVR----EAVVY 473 (721)
Q Consensus 422 ~~~~~SpD-----------------G~~la~~~-~~~l~v~d~~~g~-~~~l---~--~~~~~~~~~spdg----~~la~ 473 (721)
..+.|+|+ +++|+..+ ++.|.+||+..+. ...+ . ...+..++|+|++ +.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 45788887 35666654 7789999997543 2222 2 3567899999997 77877
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~ 543 (721)
.+ .++.++||++...... ......+..+...+..++|+|||++|+..+. +..|++|+..
T Consensus 234 ~s-------~D~~v~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~las~~~---D~~v~lw~~~ 292 (316)
T 3bg1_A 234 CS-------QDGRVFIWTCDDASSN-TWSPKLLHKFNDVVWHVSWSITANILAVSGG---DNKVTLWKES 292 (316)
T ss_dssp EE-------TTCEEEEEECSSTTCC-CCBCCEEEECSSCEEEEEECTTTCCEEEEES---SSCEEEEEEC
T ss_pred Ec-------CCCeEEEEEccCcccc-chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEEC
Confidence 76 5789999988652110 0012234445567788999999999998887 7789999865
No 177
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.54 E-value=3.3e-13 Score=141.24 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=156.4
Q ss_pred cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEE
Q 004971 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYV 443 (721)
Q Consensus 366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v 443 (721)
..+...+..++|||||+.|+.... .+ . .+++...................++++++.+++++ +..|.+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~-~~-------~--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTL-KS-------F--EIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECS-SE-------E--EEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcC-CE-------E--EEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 445667888999999998887532 22 2 33443332111111111234467888898887773 568999
Q ss_pred EECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971 444 VNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521 (721)
Q Consensus 444 ~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD 521 (721)
||+.+++... +. ...+..+.++++. ++++. ++.+.||++..... ....+.. .....++++
T Consensus 86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--------~~~i~i~d~~~~~~----~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY--------GDVISVFKFGNPWK----RITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSE--EEEEE--------TTEEEEEESSTTCC----BSSCCEE---EEEEEEEET-
T ss_pred EECCCCcEEEEEECCCceEEEEEcCCE--EEEEE--------cCEEEEEECCCCce----eeEEecc---CCceEEEEc-
Confidence 9998887543 33 5567788888774 44443 46788888765411 2222222 223456777
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcc-------------cc-eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEG-------------YG-LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~-------------~~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
+.+++.+. ..+..|++||+.+++. .. +..+..+...+..++|+|||++|+.++.++ .
T Consensus 148 -~~la~~sg-~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-------~ 218 (355)
T 3vu4_A 148 -GLLVYSNE-FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-------T 218 (355)
T ss_dssp -TEEEEEES-SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-------S
T ss_pred -cEEEEeCC-CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-------C
Confidence 77887632 1156799999987641 00 345566777789999999999999999875 7
Q ss_pred -EEEEecCCCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 588 -MYLIHPNGTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 588 -i~~~d~~~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
|.+||+.+++.......+ +...+..++|+|||++|+..+.+. .|.+||+..+
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-----------------~v~iw~~~~~ 272 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-----------------TLHVFEIFND 272 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-----------------EEEEEESSCC
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-----------------EEEEEEccCC
Confidence 999999988766555423 667889999999999999887765 3889998665
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=8.2e-12 Score=137.71 Aligned_cols=357 Identities=11% Similarity=0.080 Sum_probs=208.7
Q ss_pred cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC--CcceeccCCeEEEEeccCCCCcEEEEEEe
Q 004971 221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG--GWPCWVDESTLFFHRKSEEDDWISVYKVI 298 (721)
Q Consensus 221 p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~--~~~~ws~dg~l~~~~~~~~~g~~~l~~~~ 298 (721)
+.++.|...++++...+. ..|+++|.++++......... ....++|||+.+|.. ..++.+.+|+..
T Consensus 159 ~~~~~d~~~~~~V~~~~~----------~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~--~~dg~V~viD~~ 226 (567)
T 1qks_A 159 QMNDWDLENLFSVTLRDA----------GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI--GRDGKVNMIDLW 226 (567)
T ss_dssp CCSCCCGGGEEEEEETTT----------TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE--ETTSEEEEEETT
T ss_pred cccccCCCceEEEEeCCC----------CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEE--cCCCeEEEEECC
Confidence 345666443444444443 689999999988664432221 256899999866632 235666666432
Q ss_pred cCCCcceeccccceEEeCCCCCcccCceee----cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-------
Q 004971 299 LPQTGLVSTESVSIQRVTPPGLHAFTPATS----PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS------- 367 (721)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~------- 367 (721)
..... ....+. .+.....++|| | ||++++...... ..+.++|..+.+.........
T Consensus 227 ~~t~~-------~v~~i~-~G~~P~~ia~s~~~~p-DGk~l~v~n~~~----~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 227 MKEPT-------TVAEIK-IGSEARSIETSKMEGW-EDKYAIAGAYWP----PQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp SSSCC-------EEEEEE-CCSEEEEEEECCSTTC-TTTEEEEEEEET----TEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred CCCCc-------EeEEEe-cCCCCceeEEccccCC-CCCEEEEEEccC----CeEEEEECCCCcEEEEEecccccccccc
Confidence 01211 222332 23355788999 9 999988765443 348899998887544322111
Q ss_pred --CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceeccc--CCCCceeCcCCCEEEEEe--CCc
Q 004971 368 --PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRF--DGSFPSFSPKGDRIAFVE--FPG 440 (721)
Q Consensus 368 --~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~--~~~~~~~SpDG~~la~~~--~~~ 440 (721)
+...+..+..|+++..+++.. ... ..+++.+...... .++.... ......|+|||++++... .+.
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~-~~~-------g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNV-KET-------GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEE-TTT-------TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred ccCCCceEEEEEcCCCCEEEEEe-cCC-------CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 011334567788887766644 332 4577777543311 1111111 112357999999988773 678
Q ss_pred EEEEECCCCceEEEe-e-cCc----eeeE-EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC--CCccceEEcccCCC
Q 004971 441 VYVVNSDGSNRRQVY-F-KNA----FSTV-WDPVREAVVYTSGGPEFASESSEVDIISINVDDV--DGVSAVRRLTTNGK 511 (721)
Q Consensus 441 l~v~d~~~g~~~~l~-~-~~~----~~~~-~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~~~ 511 (721)
|.++|+++++..... . +.. ..+. ++|++..+++++. ..++.+.++..+..+. .....++.+.....
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~-----~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~ 440 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH-----MGDDSVALIGTDPEGHPDNAWKILDSFPALGG 440 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCC-----CCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence 999999998754333 2 221 1233 5888888877653 1345666666654221 01123455554433
Q ss_pred CCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCc----ccceEECc--------CCCcCceeeEEccCCCEEEEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGE----GYGLHRLT--------EGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~----~~~~~~l~--------~~~~~~~~~~~SpDG~~l~~~ 575 (721)
....+..+||+++|++...... ...|.++|+++.+ .+....+. .+...+.++.|+|||++|+++
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 4456788999999887652221 3489999988661 11112232 223456789999999999998
Q ss_pred EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~ 624 (721)
..... .....|.++|..++++...... .. ..+|.|++-++
T Consensus 521 ~~~~~--~~~~~i~v~D~~t~~~~~~i~~---~~----~~~P~g~f~~~ 560 (567)
T 1qks_A 521 VWNGK--DQESALVVVDDKTLELKHVIKD---ER----LVTPTGKFNVY 560 (567)
T ss_dssp EECCT--TSCCEEEEEETTTTEEEEEECC---TT----CCSEEEEEEHH
T ss_pred eecCC--CCCCcEEEEECCCceEEEEeCC---Cc----ccCCCeeeeee
Confidence 64210 0234899999999887665532 11 24577776544
No 179
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.53 E-value=4.5e-13 Score=144.26 Aligned_cols=248 Identities=12% Similarity=0.052 Sum_probs=164.0
Q ss_pred CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC--------CceEEeecccCCCCcccCcEEcCCCC-EEEE
Q 004971 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK--------NKFIELTRFVSPKTHHLNPFISPDSS-RVGY 386 (721)
Q Consensus 316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t--------g~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~ 386 (721)
..+...+..++|+| ++..+++... .++.|.+||+.+ ++...+.....+...+..++|+|+++ .|+.
T Consensus 125 ~~h~~~v~~l~~~p-~~~~~lat~~----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 125 INHEGEVNRARYMP-QNACVIATKT----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEESSCCSEEEEET-TEEEEEEEEC----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EcCCCcEEEEEECC-CCCcEEEEEC----CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 34445677899999 8544444322 345599999976 22223444455677788999999998 7766
Q ss_pred EEeeCCCCCCCCcceeEEEeccCCCCc------ce---ecccCCCCceeCc-CCCEEEEE-eCCcEEEEECCCCc----e
Q 004971 387 HKCRGGSTREDGNNQLLLENIKSPLPD------IS---LFRFDGSFPSFSP-KGDRIAFV-EFPGVYVVNSDGSN----R 451 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~---~~~~~~~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g~----~ 451 (721)
...++. +.++++...... .. ........++|+| ++..++.. .++.|++||+..+. .
T Consensus 200 ~~~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 200 ASDDHT---------ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp ECTTSC---------EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred EeCCCe---------EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 544443 666666542110 11 1122234579999 55666665 47899999998762 2
Q ss_pred EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971 452 RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS 529 (721)
Q Consensus 452 ~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s 529 (721)
..+. ...+..+.|+|+++.++++. ..++.+.||++..... ....+..+...+..++|+|+++.+++..
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg------~~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATG------SADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEE------ETTSEEEEEETTCTTS----CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEE------eCCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 3333 46788999999999755544 2578899998875432 5666766777888999999997644444
Q ss_pred eeCCceeEEEEECCCCc------------ccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCC
Q 004971 530 TRTGYKNLYIMDAEGGE------------GYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 530 ~~~g~~~l~~~d~~~g~------------~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.. +..|.+||+.... ...+..+..+...+..++|+|+++ .|+.++.++ .|.+|++..+
T Consensus 341 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg-------~i~iw~~~~~ 411 (430)
T 2xyi_A 341 GT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN-------IMQVWQMAEN 411 (430)
T ss_dssp ET--TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS-------EEEEEEECHH
T ss_pred eC--CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC-------CEEEeEcccc
Confidence 32 6689999987621 112444445556688999999999 566666554 8999998654
No 180
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.52 E-value=2.8e-12 Score=147.63 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=170.1
Q ss_pred cccCceee-cCCCCEEEEEEecCCCCeeeEEEEECCCC-ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971 321 HAFTPATS-PGNNKFIAVATRRPTSSYRHIELFDLVKN-KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG 398 (721)
Q Consensus 321 ~~~~~~~s-p~dG~~la~~~~~~g~~~~~l~l~dl~tg-~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~ 398 (721)
....+.|| | ||++|+|.....|.+...|+++|++++ +. +.... ......+.|||||+.|+|...+....
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~---- 245 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKV--SGTNGEIVWGPDHTSLFYVTKDETLR---- 245 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCE--EEECSCCEECSSTTEEEEEEECTTCC----
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccc--cCceeeEEEecCCCEEEEEEECCCCC----
Confidence 45678999 9 999999998877777778999999998 62 21100 11245799999999999987654211
Q ss_pred cceeEEEeccCCCCc-ceec--ccC--CCCceeCcCCCEEEEEe----CCcEEEEECCCC--ce--EEEeecCceeeEEc
Q 004971 399 NNQLLLENIKSPLPD-ISLF--RFD--GSFPSFSPKGDRIAFVE----FPGVYVVNSDGS--NR--RQVYFKNAFSTVWD 465 (721)
Q Consensus 399 ~~~l~~~~~~~~~~~-~~~~--~~~--~~~~~~SpDG~~la~~~----~~~l~v~d~~~g--~~--~~l~~~~~~~~~~s 465 (721)
..+++..++.++... .... ... ...+.|||||++|++.. ...|+++|++++ +. +.+... ...+.|+
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEE
Confidence 146888888765322 1111 111 12368999999999983 567999999876 34 555422 2234555
Q ss_pred CC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971 466 PV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541 (721)
Q Consensus 466 pd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d 541 (721)
++ |+.|++.++.. ..+..+||.++.++. ...+. +..+........+++++++|++....++..+|++++
T Consensus 325 ~~~~~g~~l~~~t~~~----~a~~~~L~~~d~~~~---~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEG----GAVNHKLLIAPRGQP---SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEETTTEEEEEECTT----TCTTCEEEEEETTST---TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred EeeeeCCEEEEEeCCC----CCCCcEEEEEcCCCc---ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 65 99999988521 135678999987641 12233 333332223345777889999999888888999999
Q ss_pred C-------CCCcccceEECcCC-CcCceeeEE----ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 542 A-------EGGEGYGLHRLTEG-PWSDTMCNW----SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 542 ~-------~~g~~~~~~~l~~~-~~~~~~~~~----SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
+ ++++. +..+... ......+.+ ++|++.|++..... .....+|.+|+.+++.+.+..
T Consensus 398 l~~~~~~~~~g~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 398 ADSQDGVFKAGTG--LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp CCTTTSCCCTTTC--CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEE
T ss_pred cccccccccCCcc--ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEec
Confidence 7 45441 2344322 121223333 56888777776543 355689999999888777764
No 181
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=2.5e-11 Score=127.92 Aligned_cols=287 Identities=11% Similarity=0.050 Sum_probs=164.8
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC--CCCCCcceeEEEecc
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS--TREDGNNQLLLENIK 408 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~~~~~~~~l~~~~~~ 408 (721)
++++++............|.++|+++++...-... +... ++++||||++|+........ .+.. ...+.+.|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v---G~~P-gia~SpDgk~lyVan~~~~~~~~G~~-~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG---GFLP-HPVAAEDGSFFAQASTVFERIARGKR-TDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---CSSC-EEEECTTSSCEEEEEEEEEETTEEEE-EEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC---CCCC-ceEECCCCCEEEEEeccccccccCCC-CCEEEEEECC
Confidence 88877665432111116799999999875433221 2234 79999999999987642100 0000 0346666665
Q ss_pred CCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEeecC---------ceeeEEcC
Q 004971 409 SPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVYFKN---------AFSTVWDP 466 (721)
Q Consensus 409 ~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~~~~---------~~~~~~sp 466 (721)
+... .+... ......+.+||||++|++.. .+.|.++|+.+++.. .+..+. ...+.+++
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR 237 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC
Confidence 5421 11111 12245679999999998874 467999999988753 343211 11234444
Q ss_pred CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971 467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545 (721)
Q Consensus 467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g 545 (721)
||+.+++... .+++.. .. . ..+.... .....+.+++|++.+++.+. ...++++|..++
T Consensus 238 dG~~~~V~~~-------~~~v~~-~~---------~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~ 296 (426)
T 3c75_H 238 DGSLARVDFA-------DGETKV-TN---------T-EVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAE 296 (426)
T ss_dssp TSSEEEEECC-------TTCCEE-EE---------C-CCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSS
T ss_pred CCCEEEEECC-------CCcEEE-Ee---------e-eeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCC
Confidence 5544444320 011110 00 0 0011111 11234678999999999875 458999999766
Q ss_pred cccceEE--Cc-CC-------CcCceeeEEccCCCEEEEEEccCCCC---CCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971 546 EGYGLHR--LT-EG-------PWSDTMCNWSPDGEWIAFASDRDNPG---SGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612 (721)
Q Consensus 546 ~~~~~~~--l~-~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~---~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 612 (721)
....+.. +. .. ......++++|||++|++........ .....|.++|+.+.+...-... ......
T Consensus 297 ~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~g 374 (426)
T 3c75_H 297 GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDS 374 (426)
T ss_dssp CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECE
T ss_pred ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCe
Confidence 5211111 10 00 11122478999999998876431100 1245899999999886655442 235788
Q ss_pred eEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Ee
Q 004971 613 PYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RL 661 (721)
Q Consensus 613 ~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l 661 (721)
+.|+|||+ ++|.....++ .|.++|+.+.++. +|
T Consensus 375 ia~spDg~~~lyv~n~~s~----------------~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 375 INVSQDAEPLLYALSAGTQ----------------TLHIYDAATGEELRSV 409 (426)
T ss_dssp EEECCSSSCEEEEEETTTT----------------EEEEEETTTCCEEEEE
T ss_pred EEEccCCCEEEEEEcCCCC----------------eEEEEECCCCCEEEEe
Confidence 99999999 5554443333 5999999998765 55
No 182
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.4e-13 Score=153.57 Aligned_cols=225 Identities=10% Similarity=0.072 Sum_probs=165.6
Q ss_pred CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...++|+|||++|+..+ ++.|.+|++.++....+. .+.+..+.|+|+ ++.|+.++ .++.+.+|++
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg~I~vwd~ 84 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDGKVLIWKE 84 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------TTSCEEEEEE
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------CCCeEEEEEC
Confidence 34578999999998885 788999999855433332 457889999998 99999887 5789999998
Q ss_pred EccCCCCccceEEcccCCCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc---
Q 004971 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP--- 567 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp--- 567 (721)
..... .....+..+...+..++|+|+ |+.|++.+. +..|++||+.++.......+..+...+..+.|+|
T Consensus 85 ~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 85 ENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp ETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred CCCcc---cccccccCCCCCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 86421 134455556677888999999 999998887 7899999998874333445556666788999999
Q ss_pred ----------CCCEEEEEEccCCCCCCceeEEEEecCCCceE-E--eeecCCCCCcCCeEECCC---CCEEEEEEecCCC
Q 004971 568 ----------DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-K--LIQSGSAGRANHPYFSPD---GKSIVFTSDYGGI 631 (721)
Q Consensus 568 ----------DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~--l~~~~~~~~~~~~~~SpD---G~~l~~~~~~~~~ 631 (721)
|++.|+.++.++ .|++||+.++... . .....+...+..++|+|+ |++|+..+.++
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg-------~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-- 229 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-- 229 (753)
T ss_dssp --------CGGGCCEEEEETTS-------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS--
T ss_pred ccccccccCCCCCEEEEEECCC-------eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC--
Confidence 689999988875 7999999776421 1 112236778899999999 88888777665
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCCC------eEEeccCCCCCCCceecCC--cCCccc
Q 004971 632 SAEPISTPHQYQPYGEIFKIKLDGSD------LKRLTQNSFEDGTPAWGPR--FIRPVD 682 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~lt~~~~~~~~~~~sp~--~l~~~~ 682 (721)
.|++||+.+++ ......+...+...+|+|+ .++.+.
T Consensus 230 ---------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 230 ---------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp ---------------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred ---------------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 39999988763 2222235556788899996 344443
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=4.6e-11 Score=125.25 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=150.6
Q ss_pred CCcccCceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C----CCCcccCcEEcCCCCEEEEEE
Q 004971 319 GLHAFTPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S----PKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~----~~~~~~~~~~Spdg~~l~~~~ 388 (721)
+... .+++|| ||+++++.... ++.....|.++|.++.+...-.... . .......++|||||++|++..
T Consensus 66 g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 66 GFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred CCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence 3344 899999 99999886531 1223445889999887643321111 0 012345789999999999876
Q ss_pred eeCCCCCCCCcceeEEEeccCCCCccee-cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEE-Ee-------ec
Q 004971 389 CRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ-VY-------FK 457 (721)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~-l~-------~~ 457 (721)
.... ..+.+.+ .+... +.. .... ..+.+.|++++.++. .++.+.+++. +++... +. ..
T Consensus 144 ~~~~-------~~v~viD-~t~~~-~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 144 FAAG-------PAVGLVV-QGGSS-DDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred cCCC-------CeEEEEE-CCCCE-EeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence 5433 3477777 65422 222 2221 224556777654443 4778888888 665432 11 01
Q ss_pred -CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------C---CCCCcceEEccCCCEEE
Q 004971 458 -NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------N---GKNNAFPSVSPDGKWIV 526 (721)
Q Consensus 458 -~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~---~~~~~~~~~SpDg~~l~ 526 (721)
....+.+++++..+++.+. .+ .++.++..+... .....+.. . ......++++|||++|+
T Consensus 213 p~~~~~~~~~~~~~~~~~~~-------~~--~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 213 NLLTQPAQANKSGRIVWPVY-------SG--KILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred ceeecceeEecCCEEEEEcC-------Cc--eEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 1124577888888887752 23 455555543200 01111110 0 11122368999999998
Q ss_pred EEEeeC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 527 FRSTRT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 527 ~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
+..... ....|+++|.++++. +..+..+. ....++|||||++++|..+. +...|.++|+++++..
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~-~p~~i~~s~Dg~~~l~v~~~-----~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGH-DVDAISVAQDGGPDLYALSA-----GTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCC-CcCeEEECCCCCeEEEEEcC-----CCCeEEEEECCCCCEE
Confidence 876421 235899999999885 56665433 35789999999955555542 1238999999998877
Q ss_pred Ee
Q 004971 600 KL 601 (721)
Q Consensus 600 ~l 601 (721)
+.
T Consensus 355 ~~ 356 (373)
T 2mad_H 355 QS 356 (373)
T ss_pred ee
Confidence 65
No 184
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.5e-12 Score=133.91 Aligned_cols=216 Identities=10% Similarity=0.046 Sum_probs=140.9
Q ss_pred cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEE---------
Q 004971 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVV--------- 444 (721)
Q Consensus 375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~--------- 444 (721)
..+.+|+..|+....++. +.++++..+.............+.++|+ ++.. .++.+.+|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~---------v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGA---------LHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSSEEEEEEEEEEETTE---------EEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCc---------EEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 345567777777666554 5566665543221211223444566665 3333 24445555
Q ss_pred ECCCCce-EEEe---ecCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceE
Q 004971 445 NSDGSNR-RQVY---FKNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPS 517 (721)
Q Consensus 445 d~~~g~~-~~l~---~~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 517 (721)
++.+++. +.+. .+.+..+.|+| +++.++..+ .++.+.+|++.... ...... .+...+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-------~dg~i~~wd~~~~~-----~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-------NRGTIGFQSYEDDS-----QYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-------TTCCEEEEESSSSC-----EEEEECCCSSCCCCEEE
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-------CCCcEEEEECCCCc-----EEEEEecCCCCceEEEE
Confidence 5555552 2332 25688999999 999999886 57899999986532 222222 2234577899
Q ss_pred EccCCCEEEEEEeeCCceeEEEEECCCCcccce-EECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
|+|||+.|+..+. +..|++||+.+++. + ..+.. +...+..++|+|||++|+.++.+ .|.+||+.+
T Consensus 178 ~~pdg~~lasg~~---dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~--------~v~iwd~~~ 244 (343)
T 3lrv_A 178 LHKDSLLLALYSP---DGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVECDQ--------TVVCFDLRK 244 (343)
T ss_dssp ECTTSCEEEEECT---TSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEESS--------BEEEEETTS
T ss_pred ECCCCCEEEEEcC---CCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEeCC--------eEEEEEcCC
Confidence 9999999998776 78999999998874 3 45665 66778999999999999988843 799999988
Q ss_pred CceEEeeec--CCCCCcC--CeEECCCCCEEEEEEe
Q 004971 596 TGLRKLIQS--GSAGRAN--HPYFSPDGKSIVFTSD 627 (721)
Q Consensus 596 ~~~~~l~~~--~~~~~~~--~~~~SpDG~~l~~~~~ 627 (721)
++....... .+...+. .++|+|+|++|+..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 764322211 0112223 4999999999998776
No 185
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.48 E-value=1.6e-13 Score=145.83 Aligned_cols=249 Identities=9% Similarity=-0.014 Sum_probs=140.3
Q ss_pred CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE---eecccCCCCcccCcEEcC--------CCCEEEEEEeeCC
Q 004971 324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE---LTRFVSPKTHHLNPFISP--------DSSRVGYHKCRGG 392 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~---l~~~~~~~~~~~~~~~Sp--------dg~~l~~~~~~~~ 392 (721)
...+++ ++..|+... .+..|++||+.+++... +....+|...+..++|+| ||+.|+..+.++.
T Consensus 94 ~~~~~~-~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 94 VNSSPV-YSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---CCE-EEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred eeecCC-CCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 344566 777777644 44569999999886432 344567788899999998 8888888776665
Q ss_pred CCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCE-EEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971 393 STREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDR-IAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWD 465 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~-la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~s 465 (721)
+.++++..... .+......+..++|+|++.. |+..+ ++.|.+||+.+++..... ........++
T Consensus 168 ---------v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 168 ---------LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp ---------EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred ---------EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 45555543321 22222333456799999864 55553 788999999887643221 1111111111
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc-cCCCEEEEEEeeCCceeEEEEECCC
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEG 544 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~ 544 (721)
++...+ ........+...+....|+ |||++|+..+. +..+.+||+.+
T Consensus 239 ~~~~~~-----------------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~---d~~i~vwd~~~ 286 (393)
T 4gq1_A 239 LNTLPL-----------------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCK---SGAWLRWNLFA 286 (393)
T ss_dssp EESGGG-----------------------------C------CCSSSCSEEEEETTTTCEEEEECT---TSEEEEEEC--
T ss_pred cccccc-----------------------------eeeeecccccccceeeeeecCCCCEEEEEeC---CCCEEEEECcc
Confidence 100000 0111112233455666775 89999988776 77899999887
Q ss_pred CcccceEECcCCCcC------------------ceeeEEcc-CCCEEEEEE-ccCCCCCCceeEEEEecCCCceEEeeec
Q 004971 545 GEGYGLHRLTEGPWS------------------DTMCNWSP-DGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQS 604 (721)
Q Consensus 545 g~~~~~~~l~~~~~~------------------~~~~~~Sp-DG~~l~~~~-~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 604 (721)
++. ...+..+... .....|+| .++.++.+. .++ .|++||+.+++.......
T Consensus 287 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 287 NND--YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------LIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------EEEEEETTCTTCCEEEEE
T ss_pred CCC--CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------EEEEEECCCCcEEEEecC
Confidence 653 2222211111 11233443 344444444 343 899999998876554433
Q ss_pred CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 605 GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 605 ~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+...+..++|||||++|+..+.++
T Consensus 358 -~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 358 -LGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp -CSSCEEEEEECTTSSEEEEEESSE
T ss_pred -CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 667789999999999999887543
No 186
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.48 E-value=2.8e-09 Score=118.86 Aligned_cols=404 Identities=11% Similarity=0.047 Sum_probs=238.9
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce--EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT--RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLS 248 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~--~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~ 248 (721)
++ .++.|+++.-.. ..|+.+++++... ..+...-......++.+.++.|+++....
T Consensus 48 ~~--~~~~ly~sD~~~---------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~----------- 105 (619)
T 3s94_A 48 VF--SHGLIYWSDVSE---------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET----------- 105 (619)
T ss_dssp ET--TTTEEEEEETTT---------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTT-----------
T ss_pred Ee--CCCEEEEEECCC---------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCC-----------
Confidence 66 688888865432 2899998877632 22322212233447888888888865332
Q ss_pred eeEEEEEcCCCceeEEEeccCCc---ceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccC
Q 004971 249 TDIYIFLTRDGTQRVKIVENGGW---PCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT 324 (721)
Q Consensus 249 ~~i~~~d~~~g~~~~l~~~~~~~---~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (721)
..|.+.++++...+.+....... .++.|. |.+|++... ....|++....+.. ....+.........
T Consensus 106 ~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g---~~~~I~r~~~dG~~-------~~~l~~~~~~~P~G 175 (619)
T 3s94_A 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG---EVPKIERAGMDGSS-------RFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS---SSCEEEEEETTSCS-------CEEEECSSCSSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC---CCCEEEEEECCCCc-------eEEEEeCCCCCCcE
Confidence 57999999766655555333333 377775 678885322 23467766555432 33333333334567
Q ss_pred ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL 404 (721)
Q Consensus 325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~ 404 (721)
+++++ ++++|+++.... ..|+.+|++....+.+.. ........+++..+ .|+++..... .++.
T Consensus 176 lald~-~~~~LY~aD~~~----~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~--------~V~~ 238 (619)
T 3s94_A 176 LTLDY-EEQKLYWADAKL----NFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTH--------SILA 238 (619)
T ss_dssp EEEET-TTTEEEEEETTT----CCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTC--------SEEE
T ss_pred EEEEc-cCCEEEEEeCCC----CeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCC--------EEEE
Confidence 89999 999999875432 459999997655433322 11223345666544 6666432221 1222
Q ss_pred EeccCCC------------Ccceec----------ccC----------------C-------CCceeCcCC--------C
Q 004971 405 ENIKSPL------------PDISLF----------RFD----------------G-------SFPSFSPKG--------D 431 (721)
Q Consensus 405 ~~~~~~~------------~~~~~~----------~~~----------------~-------~~~~~SpDG--------~ 431 (721)
.+..++. ..+... .+. . ....+.+|+ .
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 2211110 000000 000 0 011223333 2
Q ss_pred EEEEEeCCcEEEEECCCCceEE--Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971 432 RIAFVEFPGVYVVNSDGSNRRQ--VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~~~~--l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 506 (721)
.|+|.....|..+++++..... +. -..+..++|.+.+..|+++.. ..-.|++++.++. ....+
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~--------~~~~I~r~~~~g~----~~~~v 386 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD--------EVRAIRRSFIDGS----GSQFV 386 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEE
T ss_pred EEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC--------CCCeEEEEEcCCC----ccEEE
Confidence 5666677889999998765322 22 234567889998889998752 3446788887764 33333
Q ss_pred ccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971 507 TTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584 (721)
Q Consensus 507 ~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 584 (721)
.... .....+++.+.++.|+++... ...|.+.++++.. .+.+. ..-.....+++.|....|+++....
T Consensus 387 ~~~~~~~p~GlAvD~~~~~lY~tD~~--~~~I~v~~~~G~~---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~----- 456 (619)
T 3s94_A 387 VTAQIAHPDGIAVDWVARNLYWTDTG--TDRIEVTRLNGTM---RKILISEDLEEPRAIVLDPMVGYMYWTDWGE----- 456 (619)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECTTCCSEEEEEEETTTTEEEEEECSS-----
T ss_pred EECCCCCcCceEEecccCcEEEEeCC--CCcEEEEeCCCCe---EEEEEECCCCCeeeEEEEcCCCcEEEecCCC-----
Confidence 3322 566788999888999988643 5689999998665 33333 2333457899999877899887542
Q ss_pred ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
...|++.++++...+.+... .-.....++++++++.||++....+ .|+.++++|...+.+.
T Consensus 457 ~~~I~r~~~dG~~~~~l~~~-~l~~P~GlalD~~~~~LY~aD~~~~----------------~I~~~~~dG~~~~~~~ 517 (619)
T 3s94_A 457 IPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWGDAKTD----------------KIEVMNTDGTGRRVLV 517 (619)
T ss_dssp SCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEESSSCCCEEEE
T ss_pred CCEEEEEccCCCccEEEEeC-CCCCCeeeEEcccCCEEEEEECCCC----------------EEEEEecCCCceEEEe
Confidence 24899999988766655432 2345677899999999999876654 4999999888766554
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=1.2e-10 Score=128.51 Aligned_cols=300 Identities=10% Similarity=0.021 Sum_probs=177.9
Q ss_pred CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC--CCceEEeecccCCCCcccCcEEc----CCCCEEEEEEeeCC
Q 004971 319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTRFVSPKTHHLNPFIS----PDSSRVGYHKCRGG 392 (721)
Q Consensus 319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~--tg~~~~l~~~~~~~~~~~~~~~S----pdg~~l~~~~~~~~ 392 (721)
+...+.+.+|| ||++++... . +..|.++|+. +++.. .... .......+++| |||+++++......
T Consensus 196 g~~p~~v~~Sp-DGr~lyv~~-~----dg~V~viD~~~~t~~~v--~~i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~ 266 (567)
T 1qks_A 196 GYAVHISRLSA-SGRYLFVIG-R----DGKVNMIDLWMKEPTTV--AEIK-IGSEARSIETSKMEGWEDKYAIAGAYWPP 266 (567)
T ss_dssp SSCEEEEEECT-TSCEEEEEE-T----TSEEEEEETTSSSCCEE--EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred CCCccceEECC-CCCEEEEEc-C----CCeEEEEECCCCCCcEe--EEEe-cCCCCceeEEccccCCCCCEEEEEEccCC
Confidence 33456889999 999887653 2 3459999996 55532 2221 13345678999 79999999877654
Q ss_pred CCCCCCcceeEEEeccCCCCcceeccc--------------CCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-
Q 004971 393 STREDGNNQLLLENIKSPLPDISLFRF--------------DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY- 455 (721)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~- 455 (721)
.+.+.+..+.. .+..... ....+..|+++..+++. ..+.|+++|....+...+.
T Consensus 267 --------~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~ 337 (567)
T 1qks_A 267 --------QYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 337 (567)
T ss_dssp --------EEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred --------eEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence 34555543321 1111110 11234567887766665 3678999998765422222
Q ss_pred ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE-Eccc-CC--CCCcceE-EccCCCEEEE
Q 004971 456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTT-NG--KNNAFPS-VSPDGKWIVF 527 (721)
Q Consensus 456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~l~~-~~--~~~~~~~-~SpDg~~l~~ 527 (721)
........|+|||++++++.. ..+++.+ ++..+. ++. .+.. .. ....... ++|++..+++
T Consensus 338 i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~V--iD~~t~----kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 338 ISAERFLHDGGLDGSHRYFITAAN------ARNKLVV--IDTKEG----KLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 405 (567)
T ss_dssp EECCSSEEEEEECTTSCEEEEEEG------GGTEEEE--EETTTT----EEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred eeccccccCceECCCCCEEEEEeC------CCCeEEE--EECCCC----cEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence 234457889999999999873 2344444 566553 332 2322 11 1112334 5898888766
Q ss_pred EEeeCCceeEEEEECCCCc-----ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-----c
Q 004971 528 RSTRTGYKNLYIMDAEGGE-----GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-----G 597 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~~g~-----~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-----~ 597 (721)
.+. -+...|.++|.+++. .+.+..+.........+..+||+++|++...-.........|.++|+++. .
T Consensus 406 t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 406 TSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred eCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 553 234679999988732 22355554332222457789999998876632100000237999998765 2
Q ss_pred -eEEeeec-------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 598 -LRKLIQS-------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 598 -~~~l~~~-------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
...+... .....+.++.|+|||++|+++.-..... .+.|.++|.++.+++..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~------------~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQ------------ESALVVVDDKTLELKHV 544 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTS------------CCEEEEEETTTTEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCC------------CCcEEEEECCCceEEEE
Confidence 1122211 1234567899999999998874321100 13599999999877543
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.43 E-value=1.5e-11 Score=124.89 Aligned_cols=244 Identities=14% Similarity=0.134 Sum_probs=154.2
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS 449 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g 449 (721)
...+++|+|+|+.|+++..... .++.++..++...+.........++++|||+.++... ...|++||..++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQN--------RTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGT--------EEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred cccCCeEeCCCCEEEEEeCCCC--------EEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 3457999999997777654433 4677776554111111112234578999998655443 478999999888
Q ss_pred ceEEEee-------cCceeeEEcCCCCeEEEEec-CC-------CCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971 450 NRRQVYF-------KNAFSTVWDPVREAVVYTSG-GP-------EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514 (721)
Q Consensus 450 ~~~~l~~-------~~~~~~~~spdg~~la~~~~-~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 514 (721)
+.+.+.. ..+..++++|+|+.++.... +. ..........||.++.++ ....+........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-----TLSAPIRDRVKPN 175 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-----CEEEEECCCSSEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-----CEEEeecCCCCCc
Confidence 7666541 23457999999975443210 00 000112245788888763 4455544444567
Q ss_pred ceEEccCCCEEEEEEeeCCceeEEEEECC-CCcc-cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
.++|+|||+.| +.... ...|++|+++ +|+. .....+.........+++++||+ |+++. .. .|++|+
T Consensus 176 gi~~s~dg~~l-v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~-------~v~~~~ 243 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDTG--DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GD-------GVHVLT 243 (296)
T ss_dssp EEEECTTSCEE-EEETT--TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TT-------EEEEEC
T ss_pred cEEECCCCCEE-EEeCC--CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CC-------eEEEEC
Confidence 79999999998 55432 4689999986 4542 11122222223346789999998 44444 32 799999
Q ss_pred cCCCceEEeeecCCCCCcCCeEE-CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971 593 PNGTGLRKLIQSGSAGRANHPYF-SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660 (721)
Q Consensus 593 ~~~~~~~~l~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 660 (721)
.++.....+.. ... +..++| +|||+.|++++.+ .||.+++++++++.
T Consensus 244 ~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~------------------~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 244 PDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST------------------EFWSIETNVRGLEH 291 (296)
T ss_dssp TTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT------------------EEEEEECSCCBCCC
T ss_pred CCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC------------------eEEEEEcccccccc
Confidence 98544444432 334 788899 6999999887754 29999998876654
No 189
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.2e-11 Score=123.80 Aligned_cols=235 Identities=10% Similarity=0.001 Sum_probs=153.1
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR 451 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~ 451 (721)
..++.|+|+++.|+++.... ..++.++..++.............+++++||+ |++.....|+++|.++++.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~--------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPA--------KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATIGTKFCALNWKEQSA 85 (297)
T ss_dssp EEEEEEETTTTEEEEEETTT--------TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEETTEEEEEETTTTEE
T ss_pred ccCCeEECCCCEEEEEECCC--------CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEECCeEEEEECCCCcE
Confidence 34689999988988865433 35777777655332222233345678999998 5555678999999998887
Q ss_pred EEEee-------cCceeeEEcCCCCeEEEEecCCCC---CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971 452 RQVYF-------KNAFSTVWDPVREAVVYTSGGPEF---ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD 521 (721)
Q Consensus 452 ~~l~~-------~~~~~~~~spdg~~la~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD 521 (721)
+.+.. ..+..+.++|||+ ++++...... ........||.++.++ ....+.........++|+||
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-----HVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-----CEEEEEEEESBEEEEEECTT
T ss_pred EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-----CEEEEeeccccccceEEcCC
Confidence 66652 1245689999998 4554321100 0123456899988754 33333333334567899999
Q ss_pred CCEEEEEEeeCCceeEEEEEC--CCCcccc---eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 522 GKWIVFRSTRTGYKNLYIMDA--EGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~--~~g~~~~---~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
|+.|++.... ...|+++++ .+|.... ...+.........+++++||+ |+++.... ..|++||.+++
T Consensus 160 g~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~------~~v~~~d~~tG 230 (297)
T 3g4e_A 160 HKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG------GRVIRLDPVTG 230 (297)
T ss_dssp SCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT------TEEEEECTTTC
T ss_pred CCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC------CEEEEEcCCCc
Confidence 9999888753 457888876 5565311 122222223446789999996 55554432 27999999877
Q ss_pred ceEEeeecCCCCCcCCeEEC-CCCCEEEEEEecCCC
Q 004971 597 GLRKLIQSGSAGRANHPYFS-PDGKSIVFTSDYGGI 631 (721)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~ 631 (721)
+....... ....+.+++|+ ||++.|++++...+.
T Consensus 231 ~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~~~~~ 265 (297)
T 3g4e_A 231 KRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCARDGM 265 (297)
T ss_dssp CEEEEEEC-SSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred eEEEEEEC-CCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence 76554443 33567889998 999999999887653
No 190
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.42 E-value=8.1e-11 Score=118.54 Aligned_cols=254 Identities=9% Similarity=0.036 Sum_probs=143.6
Q ss_pred eEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceeccc-CCC
Q 004971 348 HIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRF-DGS 422 (721)
Q Consensus 348 ~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~-~~~ 422 (721)
.+.+|+..++. .+.+.....+...+..+.++||-.-|+.+.-.+-.. ..+...-+... ..+...... ...
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~v~sla~spd~~~~~~~l~s~g~~~~ 138 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI-----REIRALFCSSDDESEKQVLLKSGNIKA 138 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE-----EEEEEECC------CCEEEEEEEEEEE
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc-----cceEEEEECCCccccccEEEeCCCeEE
Confidence 38899988772 235555555666677788888776665543322210 01111111100 001000000 000
Q ss_pred CceeCcCCCEEEEEe---CCcEEEEEC-CCCce-EEEe--ecCceeeEEcC---CCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 423 FPSFSPKGDRIAFVE---FPGVYVVNS-DGSNR-RQVY--FKNAFSTVWDP---VREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 423 ~~~~SpDG~~la~~~---~~~l~v~d~-~~g~~-~~l~--~~~~~~~~~sp---dg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
-..+ ++|+.+.... +..|.+|++ ..|+. ..+. ...+..++|+| |+..|+..+ .++.++||++
T Consensus 139 v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS-------~D~TIkIWDl 210 (356)
T 2w18_A 139 VLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT-------IMNNIVIWNL 210 (356)
T ss_dssp EEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE-------TTSEEEEEET
T ss_pred EEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec-------CCCcEEEEEC
Confidence 0112 3343333322 667888887 33443 2222 45566778888 667787776 6899999998
Q ss_pred EccCCCCccceEEcccCCC---CCcceEEccCCCEEEEEEe---------eCCceeEEEEECCCCcccceEEC----cCC
Q 004971 493 NVDDVDGVSAVRRLTTNGK---NNAFPSVSPDGKWIVFRST---------RTGYKNLYIMDAEGGEGYGLHRL----TEG 556 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~---~~~~~~~SpDg~~l~~~s~---------~~g~~~l~~~d~~~g~~~~~~~l----~~~ 556 (721)
.... ..+.+..+.. .+...+|||||+.++..+. ...+..|.+||+.+++. +..+ ..+
T Consensus 211 ~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~--l~v~~~~~p~G 283 (356)
T 2w18_A 211 KTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS--VGVMLYCLPPG 283 (356)
T ss_dssp TTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE--EEEEEECCCTT
T ss_pred CCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE--EEEEEeeccCC
Confidence 6543 5566654432 3344589999998876442 12367899999998874 2222 111
Q ss_pred CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC-CeEECCCCCEEEEEEecCC
Q 004971 557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~ 630 (721)
.. ...+..+.+|..++.++.++ .|++||+.+++....... +...+. .++|||||++|+..+.+..
T Consensus 284 h~-~~~lsg~~sg~~lASgS~Dg-------TIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 284 QA-GRFLEGDVKDHCAAAILTSG-------TIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp CC-CCEEEEEEETTEEEEEETTS-------CEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSC
T ss_pred Cc-ceeEccccCCCEEEEEcCCC-------cEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCc
Confidence 11 11233344477777777664 899999999987665542 444444 5899999999998776653
No 191
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.41 E-value=6.1e-11 Score=125.82 Aligned_cols=272 Identities=11% Similarity=0.024 Sum_probs=143.2
Q ss_pred ccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEE--Eec-cC--C---cceecc--------CCeEEEE
Q 004971 220 SPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK--IVE-NG--G---WPCWVD--------ESTLFFH 283 (721)
Q Consensus 220 ~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l--~~~-~~--~---~~~ws~--------dg~l~~~ 283 (721)
...+++++++||.++.+. .|.+|+..+++.... ... .+ + ..+|+| ||+++++
T Consensus 94 ~~~~~~~~~~las~~~d~------------~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las 161 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDN------------TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIAS 161 (393)
T ss_dssp ---CCEEEEEEEEEETTS------------CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCC------------cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence 335777888999877554 477788877765432 211 11 1 347887 7787774
Q ss_pred eccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCE-EEEEEecCCCCeeeEEEEECCCCceEEe
Q 004971 284 RKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKF-IAVATRRPTSSYRHIELFDLVKNKFIEL 362 (721)
Q Consensus 284 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~-la~~~~~~g~~~~~l~l~dl~tg~~~~l 362 (721)
. ..|+.+.||++.... ....+..+...+..++|+| ++.. |+... .+..|++||+.+++....
T Consensus 162 ~--s~D~tv~~Wd~~~~~---------~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~-----~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 162 V--GDDCTLIIWRLTDEG---------PILAGYPLSSPGISVQFRP-SNPNQLIVGE-----RNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp E--ETTSEEEEEEEETTE---------EEEEEEECSSCEEEEEEET-TEEEEEEEEE-----TTSEEEEEETTCCC----
T ss_pred E--ECCCeEEEEECCCCc---------eeeeecCCCCCcEEEEECC-CCCceEEecC-----CCCEEEEEECCCCccccc
Confidence 3 338999999765433 3444445555677899999 9864 44432 345699999998763221
Q ss_pred ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCcee-CcCCCEEEEEe-CCc
Q 004971 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSF-SPKGDRIAFVE-FPG 440 (721)
Q Consensus 363 ~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-SpDG~~la~~~-~~~ 440 (721)
. ...........++++...+. ......+.. .....+.| +|||+.|+... ++.
T Consensus 225 ~--~~~~~~~~~~~~s~~~~~~~-----------------~~~~~~~~~-------~~v~~v~~~~~dg~~l~s~s~d~~ 278 (393)
T 4gq1_A 225 N--SQTELVKNPWLLTLNTLPLV-----------------NTCHSSGIA-------SSLANVRWIGSDGSGILAMCKSGA 278 (393)
T ss_dssp --------CSCCCSEEEESGGGC-----------------------CCS-------SSCSEEEEETTTTCEEEEECTTSE
T ss_pred c--cccCCcccceEEecccccce-----------------eeeeccccc-------ccceeeeeecCCCCEEEEEeCCCC
Confidence 1 11111111111111110000 000001111 11223455 48999988874 778
Q ss_pred EEEEECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971 441 VYVVNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS 517 (721)
Q Consensus 441 l~v~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (721)
+.+||+..+.... +. ...+....++|++ +.+.... ......
T Consensus 279 i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~-~~~~~~ 322 (393)
T 4gq1_A 279 WLRWNLFANNDYNEISDSTMKLGPKNLLPNV-----------------------------------QGISLFP-SLLGAC 322 (393)
T ss_dssp EEEEEC-------------------CCSCSE-----------------------------------EEECSSC-CSSCCE
T ss_pred EEEEECccCCCCceEeeecCccccEEEcccc-----------------------------------ccccccC-cceeEE
Confidence 9999997665322 21 1122222233322 1122222 222234
Q ss_pred Ecc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 518 VSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 518 ~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
|+| .++.++..... +..|++||..+++. ...+..+...+..++|||||++||+++.+ .+.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~--Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~--------Gv~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQ--HGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEG--------SVLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETT--TTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESS--------EEEEEEEG
T ss_pred EccCCCCEEEEEECC--CCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEEe
Confidence 444 34444444322 67899999998875 44455566678899999999999999876 56666653
No 192
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.41 E-value=5.1e-08 Score=108.69 Aligned_cols=409 Identities=14% Similarity=0.115 Sum_probs=228.6
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecC-CCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTP-YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI 253 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~ 253 (721)
.++.|+++.... ..|...+++|...+.|.. .-..-...++.|.+.+|+|+.... ...|++
T Consensus 94 ~~~~ly~~d~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----------~~~I~r 154 (619)
T 3s94_A 94 LGEKLYWTDSET---------NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------VPKIER 154 (619)
T ss_dssp TTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS----------SCEEEE
T ss_pred cCCEEEEEeCCC---------CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC----------CCEEEE
Confidence 578788865442 289999998876665532 112223447888877888864322 268999
Q ss_pred EEcCCCceeEEEeccCCcc---eeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceee
Q 004971 254 FLTRDGTQRVKIVENGGWP---CWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATS 328 (721)
Q Consensus 254 ~d~~~g~~~~l~~~~~~~~---~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 328 (721)
.++++...+.+.......| +..++ +++|++ +. +...|+.+...+.. .+.+.. .......+++
T Consensus 155 ~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a--D~--~~~~I~~~~~dG~~--------~~~~~~~~~~~P~gi~~- 221 (619)
T 3s94_A 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA--DA--KLNFIHKSNLDGTN--------RQAVVKGSLPHPFALTL- 221 (619)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE--ET--TTCCEEEESSSCCE--------EC---------CCCEEE-
T ss_pred EECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE--eC--CCCeEEEecCCCCc--------cEEEEeCCCCCceEEEE-
Confidence 9997666666654444444 67765 678884 22 22345644444322 222221 1122345566
Q ss_pred cCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecc-------------cCCCC---------cccCc-EEcCCCCEE
Q 004971 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRF-------------VSPKT---------HHLNP-FISPDSSRV 384 (721)
Q Consensus 329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~-------------~~~~~---------~~~~~-~~Spdg~~l 384 (721)
++++|++.... ...|+..|..+|+... +... ..+.. ..... ..+|.+..
T Consensus 222 --~~~~ly~td~~----~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~- 294 (619)
T 3s94_A 222 --FEDILYWTDWS----THSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF- 294 (619)
T ss_dssp --SSSEEEEECTT----TCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTS-
T ss_pred --eCCEEEEecCC----CCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCC-
Confidence 55678775432 2348889987775322 1100 00000 00001 11221100
Q ss_pred EEEEeeCCCC--------CCCCc--------ceeEEEeccCCCC-cceec-c--cCCCCceeCcCCCEEEEEe--CCcEE
Q 004971 385 GYHKCRGGST--------REDGN--------NQLLLENIKSPLP-DISLF-R--FDGSFPSFSPKGDRIAFVE--FPGVY 442 (721)
Q Consensus 385 ~~~~~~~~~~--------~~~~~--------~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~SpDG~~la~~~--~~~l~ 442 (721)
+......+.. ..... ..+...++..... .+... . .....+++.+.+.+|+++. ...|+
T Consensus 295 ~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~ 374 (619)
T 3s94_A 295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR 374 (619)
T ss_dssp EEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEE
Confidence 0111111100 00000 1123333333211 11110 0 1122356777777888884 67899
Q ss_pred EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEE
Q 004971 443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSV 518 (721)
Q Consensus 443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 518 (721)
.+++++.....+. ...+..+++.+.++.|+++.. ..-.|..+++++. ..+.+.... .....+++
T Consensus 375 r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~--------~~~~I~v~~~~G~----~~~~l~~~~l~~P~~iav 442 (619)
T 3s94_A 375 RSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT--------GTDRIEVTRLNGT----MRKILISEDLEEPRAIVL 442 (619)
T ss_dssp EEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEEECTTCCSEEEEEE
T ss_pred EEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeC--------CCCcEEEEeCCCC----eEEEEEECCCCCeeeEEE
Confidence 9999887655554 245678899888999998852 2335556666654 344444332 46677899
Q ss_pred ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
.|...+|+++.... ...|++.++++.. ...+. ..-.....++++++++.|+++.... ..|+.+++++..
T Consensus 443 dp~~G~ly~tD~g~-~~~I~r~~~dG~~---~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~------~~I~~~~~dG~~ 512 (619)
T 3s94_A 443 DPMVGYMYWTDWGE-IPKIERAALDGSD---RVVLVNTSLGWPNGLALDYDEGKIYWGDAKT------DKIEVMNTDGTG 512 (619)
T ss_dssp ETTTTEEEEEECSS-SCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------TEEEEEESSSCC
T ss_pred EcCCCcEEEecCCC-CCEEEEEccCCCc---cEEEEeCCCCCCeeeEEcccCCEEEEEECCC------CEEEEEecCCCc
Confidence 99888898887532 4689999998655 23332 2233457899999999999998653 389999998877
Q ss_pred eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.+.+... .-.....++.. +.+||++..... .|+++|..+++.+.+..
T Consensus 513 ~~~~~~~-~l~~P~glav~--~~~ly~tD~~~~----------------~I~~~~k~~g~~~~~~~ 559 (619)
T 3s94_A 513 RRVLVED-KIPHIFGFTLL--GDYVYWTDWQRR----------------SIERVHKRSAEREVIID 559 (619)
T ss_dssp CEEEEEC-CCCSSCCEEEE--TTEEEEECTTSS----------------CEEEEESSSCCEEEEEC
T ss_pred eEEEecc-CCCCcEEEEEE--CCEEEEeecCCC----------------eEEEEEcCCCceEEEec
Confidence 6666532 22233455554 448888765443 49999988886555543
No 193
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.41 E-value=4.1e-11 Score=129.08 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=173.5
Q ss_pred EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE
Q 004971 376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV 454 (721)
Q Consensus 376 ~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l 454 (721)
++++|++.|+....++. +.++++.++............-.+++.|++.|+..+ ++.|.+||+.+++....
T Consensus 138 ~~~~d~~~l~~g~~dg~---------i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNT---------IKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp EEECCSSEEEEEESSSC---------EEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred EEEECCCEEEEEeCCCe---------EEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 45668999888766555 555665544221111111122224445888888875 78999999998875443
Q ss_pred e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee
Q 004971 455 Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 455 ~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
. ...+..+.|++ ..++..+ .++.+.+|++..... ......+..+...+..+.| ++++|+..+.
T Consensus 209 ~~~h~~~v~~l~~~~--~~l~s~s-------~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~- 274 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN--GMMVTCS-------KDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDF--DDKYIVSASG- 274 (435)
T ss_dssp ECCCCSCEEEEECCT--TEEEEEE-------TTSCEEEEECSSSSC--CEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred EcCCCCcEEEEEEcC--CEEEEee-------CCCcEEEEeCCCCCC--ceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence 3 45667778864 4777765 578999998875432 0011344455555555666 8899998887
Q ss_pred CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 611 (721)
+..|.+||+.+++. +..+..+...+..+.| +++.|+.++.++ .|++||+.+++....... +...+.
T Consensus 275 --dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~-h~~~v~ 340 (435)
T 1p22_A 275 --DRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDN-------TIRLWDIECGACLRVLEG-HEELVR 340 (435)
T ss_dssp --TSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTS-------CEEEEETTTCCEEEEECC-CSSCEE
T ss_pred --CCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCC-------eEEEEECCCCCEEEEEeC-CcCcEE
Confidence 78899999998875 5566666666666666 578888888775 899999998876655543 666677
Q ss_pred CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC----------eEEeccCCCCCCCceecCCcCCcc
Q 004971 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD----------LKRLTQNSFEDGTPAWGPRFIRPV 681 (721)
Q Consensus 612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----------~~~lt~~~~~~~~~~~sp~~l~~~ 681 (721)
.++| |+++|+..+.++ .|.+||+.+++ ...+..+...+...+|.+..++.+
T Consensus 341 ~~~~--~~~~l~sg~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~ 401 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDG-----------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 401 (435)
T ss_dssp EEEC--CSSEEEEEETTS-----------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEEC
T ss_pred EEEe--cCCEEEEEeCCC-----------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEE
Confidence 7777 788888877665 39999986543 567777888888899977777766
Q ss_pred ccc
Q 004971 682 DVE 684 (721)
Q Consensus 682 ~~~ 684 (721)
..+
T Consensus 402 s~D 404 (435)
T 1p22_A 402 SHD 404 (435)
T ss_dssp CSS
T ss_pred eCC
Confidence 644
No 194
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.39 E-value=3.2e-08 Score=110.45 Aligned_cols=413 Identities=10% Similarity=0.066 Sum_probs=241.5
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC-CCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG-VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~ 249 (721)
.+ +++.|+++.... ..|+++++++...+.+...+ ......++.+.+..|+++.... .
T Consensus 45 d~--~~~~lywtD~~~---------~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~-----------~ 102 (628)
T 4a0p_A 45 DV--TDNRIYWTDISL---------KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT-----------N 102 (628)
T ss_dssp ET--TTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT-----------T
T ss_pred EC--CCCEEEEEECCC---------CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCC-----------C
Confidence 66 778788765442 28999999887666553322 2233446777788888864322 5
Q ss_pred eEEEEEcCCCceeEEEeccCCcc---eecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971 250 DIYIFLTRDGTQRVKIVENGGWP---CWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP 325 (721)
Q Consensus 250 ~i~~~d~~~g~~~~l~~~~~~~~---~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (721)
.|.+.++++...+.+.......| +..| +|.+|++.. .....|+++...+.. ...+.........+
T Consensus 103 ~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~---g~~~~I~r~~~dG~~--------~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 103 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW---GGKPKIDRAAMDGSE--------RTTLVPNVGRANGL 171 (628)
T ss_dssp EEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTSCS--------CEEEECSCSSEEEE
T ss_pred EEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC---CCCCEEEEEeCCCCc--------eEEEECCCCCcceE
Confidence 89999997766555553333333 6776 477888432 124467766655432 23333333345678
Q ss_pred eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CCCCcc-
Q 004971 326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----REDGNN- 400 (721)
Q Consensus 326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~~~~~- 400 (721)
++++ ++++|+++.... ..|+.+|+++...+.+.. .......+++. +.+|+++......- ...+..
T Consensus 172 alD~-~~~~LY~aD~~~----~~I~~~d~dG~~~~v~~~---~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 172 TIDY-AKRRLYWTDLDT----NLIESSNMLGLNREVIAD---DLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EEET-TTTEEEEEETTT----TEEEEEETTSCSCEEEEE---CCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEcc-ccCEEEEEECCC----CEEEEEcCCCCceEEeec---cCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCce
Confidence 9999 999999875432 359999997655433321 12233345554 45676654322100 000100
Q ss_pred -----------eeEEEecc-C-CCCccee--ccc-------C-C-------CCceeCcCC-------CEEEEEeCCcEEE
Q 004971 401 -----------QLLLENIK-S-PLPDISL--FRF-------D-G-------SFPSFSPKG-------DRIAFVEFPGVYV 443 (721)
Q Consensus 401 -----------~l~~~~~~-~-~~~~~~~--~~~-------~-~-------~~~~~SpDG-------~~la~~~~~~l~v 443 (721)
.+.+.... . ....-.. ..+ . + ......+|+ ..|+|.....|..
T Consensus 242 ~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~ 321 (628)
T 4a0p_A 242 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 321 (628)
T ss_dssp EEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEE
T ss_pred EEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEE
Confidence 11111100 0 0000000 000 0 0 012334444 3566667777887
Q ss_pred EECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc------CCCC
Q 004971 444 VNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT------NGKN 512 (721)
Q Consensus 444 ~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~------~~~~ 512 (721)
+.++.... ..+. ...+..++|.+....|+++-. ..-.|+++..++. .....+.. ....
T Consensus 322 i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~--------~~~~I~r~~~~g~---~~~~v~~~~~~~~~~~~~ 390 (628)
T 4a0p_A 322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS--------RQNMIRKAQEDGS---QGFTVVVSSVPSQNLEIQ 390 (628)
T ss_dssp ECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC---SCEEEEC--------CCC
T ss_pred EecccccCceEEEEehhcCCceEEEEecCCCeEEEEec--------CcceEEEEEcCCC---CceEEEEcccccccccCC
Confidence 77765431 1222 234667899999999998742 3445677776654 12223332 1235
Q ss_pred CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
...+++...++.|+++... ...|.+.++++.. .+.+. ........+++.|...+|+++.... ....|++.
T Consensus 391 p~glAvD~~~~nLY~td~~--~~~I~v~~~~G~~---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~----~~~~I~r~ 461 (628)
T 4a0p_A 391 PYDLSIDIYSRYIYWTCEA--TNVINVTRLDGRS---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE----RSPKIERA 461 (628)
T ss_dssp EEEEEEETTTTEEEEEETT--TTEEEEEETTSCE---EEEEEECTTCCEEEEEEETTTTEEEEEEEET----TEEEEEEE
T ss_pred cceEEeeccCCeEEEEcCC--CCEEEEEECCCCe---EEEEEeCCCCceeeEEEecCCCeEEEeecCC----CCCeEEEE
Confidence 6678999999999988743 5679899987543 23332 2233457899999777888887652 22379999
Q ss_pred ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
++++...+.+... .-.....++++++++.||++..... .|+.++++|...+.+..
T Consensus 462 ~~dG~~~~~l~~~-~l~~P~gla~D~~~~~LYw~D~~~~----------------~I~~~~~dG~~r~~~~~ 516 (628)
T 4a0p_A 462 ALDGTEREVLFFS-GLSKPIALALDSRLGKLFWADSDLR----------------RIESSDLSGANRIVLED 516 (628)
T ss_dssp ETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred eCCCCCcEEEEec-cCCCccEEEEeCCCCEEEEEeCCCC----------------EEEEEeCCCCceEEEEc
Confidence 9998776666542 2345678899999999999876553 48889998877666653
No 195
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.39 E-value=2.8e-11 Score=121.84 Aligned_cols=219 Identities=9% Similarity=0.045 Sum_probs=134.5
Q ss_pred cccCceeecCC----CCEEEEEEecCCCCeeeEEEEECCCCceEEeec-ccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 321 HAFTPATSPGN----NKFIAVATRRPTSSYRHIELFDLVKNKFIELTR-FVSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 321 ~~~~~~~sp~d----G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~-~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
.+..+++|| | +++++... ..+.+|++.+++ .+.. ..++...+...+++|||+.+........
T Consensus 113 ~v~sla~sp-d~~~~~~~l~s~g-------~~~~v~~l~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--- 179 (356)
T 2w18_A 113 EIRALFCSS-DDESEKQVLLKSG-------NIKAVLGLTKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP--- 179 (356)
T ss_dssp EEEEECC-------CCEEEEEEE-------EEEEEEEETTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEECCC---
T ss_pred ceEEEEECC-CccccccEEEeCC-------CeEEEEecCCCc--EEEecccCCCCcEEEEEECCCCceeeeeccCCC---
Confidence 345778899 9 88877633 227788888776 3332 2445677778889999987664321111
Q ss_pred CCCcceeEEEeccCCCCcceecccCCCCceeCc---CCCEEEEEe-CCcEEEEECCCCce-EEEee-----cCceeeEEc
Q 004971 396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP---KGDRIAFVE-FPGVYVVNSDGSNR-RQVYF-----KNAFSTVWD 465 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp---DG~~la~~~-~~~l~v~d~~~g~~-~~l~~-----~~~~~~~~s 465 (721)
....++||+ |+..|+..+ ++.|.+||+++|+. +.+.. ..+...+||
T Consensus 180 ------------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 180 ------------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp ------------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred ------------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 133457888 778888875 88999999999885 44431 134456899
Q ss_pred CCCCeEEEEecCCC---C--CCCCCcEEEEEEEccCCCCccceEEcc---cCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 466 PVREAVVYTSGGPE---F--ASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 466 pdg~~la~~~~~~~---~--~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
|||+.++..+.... . ...+..+++|+.. ++ .....+. ..+.....+..+.+|..++..+. +..|
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~--tg---k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~---DgTI 307 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK--TT---LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT---SGTI 307 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETT--TT---EEEEEEEECCCTTCCCCEEEEEEETTEEEEEET---TSCE
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECC--CC---EEEEEEEeeccCCCcceeEccccCCCEEEEEcC---CCcE
Confidence 99999876542100 0 1245677777543 22 1222221 01111112223334666776665 6789
Q ss_pred EEEECCCCcccceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
++||+.+|+. +..+..+...+ ..++|||||++|+.++.+. .|++||+
T Consensus 308 kIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~-------TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHLLAGQKDG-------NIFVYHY 355 (356)
T ss_dssp EEEETTTCSE--EEEECCC--CCCCEEEECSSSSEEEEECTTS-------CEEEEEE
T ss_pred EEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEEEEEECCC-------cEEEecC
Confidence 9999999985 66666554433 3589999999999988875 8999985
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=4.3e-10 Score=116.27 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=147.7
Q ss_pred ceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 325 PATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 325 ~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
+.+|| ||++++..... .|.....|.+||.++++...-..... .......+++||||++|++......
T Consensus 83 va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~-- 159 (386)
T 3sjl_D 83 PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA-- 159 (386)
T ss_dssp EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence 99999 99998876531 11234569999999987533221110 0224667899999999988765333
Q ss_pred CCCCcceeEEEeccCCCC--cceeccc------C-CCCceeCcCCCEEEEEeCCcEEEEECCC-CceEE----Ee---ec
Q 004971 395 REDGNNQLLLENIKSPLP--DISLFRF------D-GSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQ----VY---FK 457 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~--~~~~~~~------~-~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~----l~---~~ 457 (721)
..+.+.++.+... .+....+ . ..+...++||+.+ ++++.. ++... +. ..
T Consensus 160 -----~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~---------~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 160 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA---------KVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEE---------EEECCSSSCCEEEECCCCSCTTS
T ss_pred -----CeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEE---------EEECCCCCeEEEeecceeccccc
Confidence 3577777765521 1111000 0 1122445555544 344432 22211 11 11
Q ss_pred Cc-eeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc----------C---CCCCcceEEccCC
Q 004971 458 NA-FSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT----------N---GKNNAFPSVSPDG 522 (721)
Q Consensus 458 ~~-~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~----------~---~~~~~~~~~SpDg 522 (721)
.+ ..+.|. +|| +++|.+. .+ .++.++..+. ..+.+.. . .......+++||+
T Consensus 226 ~~~~~~~~~~~dG-~~~~vs~-------~g--~V~v~d~~~~----~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 226 FLINHPAYSQKAG-RLVWPTY-------TG--KIHQIDLSSG----DAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CBCSCCEEETTTT-EEEEEBT-------TS--EEEEEECTTS----SCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred cccccceeEcCCC-cEEEEeC-------CC--EEEEEECCCC----cceeecceeccccccccccccCCCcceeeECCCC
Confidence 11 235664 677 4555652 34 4566665442 2111110 0 1233457889999
Q ss_pred CEEEEEEeeC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 523 KWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 523 ~~l~~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
++|++..... ...+|+++|+.+++. ++.+.-+. ....+++||||+.++|..+. ....|.++|..+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~~~i~vg~-~~~~lavs~D~~~~ly~tn~-----~~~~VsViD~~t 363 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEMGH-EIDSINVSQDEKPLLYALST-----GDKTLYIHDAES 363 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEEEE-EECEEEECSSSSCEEEEEET-----TTTEEEEEETTT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeE--EEEEECCC-CcceEEECCCCCeEEEEEcC-----CCCeEEEEECCC
Confidence 9999986432 246899999999886 56665433 34689999999844444433 123899999999
Q ss_pred CceEEeeecCCCCCcCCeEECCC
Q 004971 596 TGLRKLIQSGSAGRANHPYFSPD 618 (721)
Q Consensus 596 ~~~~~l~~~~~~~~~~~~~~SpD 618 (721)
++..+-.. ..+....+.+++|
T Consensus 364 ~k~~~~i~--~~~~p~~l~~s~d 384 (386)
T 3sjl_D 364 GEELRSVN--QLGHGPQVITTAD 384 (386)
T ss_dssp CCEEEEEC--CCCSSCCEEEECC
T ss_pred CcEEEEec--CCCCCceeEECCc
Confidence 98776554 4466677888887
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=2.4e-10 Score=120.44 Aligned_cols=261 Identities=11% Similarity=0.108 Sum_probs=154.4
Q ss_pred CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C----CCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S----PKTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~----~~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+.+|| ||++++..... .|.....|.++|..+++...-.... . .......+++||||++|++......
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~- 199 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA- 199 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS-
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC-
Confidence 789999 99998876531 1113456999999998754322111 0 0134567899999999998765433
Q ss_pred CCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEE----e---ec-CceeeE
Q 004971 394 TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQV----Y---FK-NAFSTV 463 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l----~---~~-~~~~~~ 463 (721)
..+.+.|+.+... +....... .....|+|++.++. .++.+.++++.+++.... . .. ....+.
T Consensus 200 ------~~VsVID~~t~kv-v~~I~v~g-~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 200 ------PAVGVVDLEGKTF-DRMLDVPD-CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ------CEEEEEETTTTEE-EEEEECCS-EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred ------CeEEEEECCCCeE-EEEEEcCC-ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 4577777765521 11111111 12334444332222 355666666655543311 1 11 112467
Q ss_pred EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc------C-------CCCCcceEEccCCCEEEEEEe
Q 004971 464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT------N-------GKNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~------~-------~~~~~~~~~SpDg~~l~~~s~ 530 (721)
++++++.+++.+. .+ .++.++..+. ....+.. . ......++++|||++|++...
T Consensus 272 ~~~dg~~~~~~s~-------~g--~V~ViD~~~~----~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 272 FSLRSGRLVWPTY-------TG--KIFQADLTAE----GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp ECTTTCEEEEEBT-------TS--EEEEEEECSS----CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred ecCCCCEEEEEeC-------CC--cEEEEeccCC----ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 8999999999862 24 3555555432 2211110 0 112233689999999988764
Q ss_pred eC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 531 RT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 531 ~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
.. +..+|.++|..+.+. +..+.-+. ....++|+|||+ .|+...... ..|.++|+.+++..+..
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kv--v~~I~vg~-~P~gia~spDg~~~lyv~n~~s------~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGER--INKIELGH-EIDSINVSQDAEPLLYALSAGT------QTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCE--EEEEEEEE-EECEEEECCSSSCEEEEEETTT------TEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeE--EEEEECCC-CcCeEEEccCCCEEEEEEcCCC------CeEEEEECCCCCEEEEe
Confidence 21 245899999999885 56665333 247899999999 666555322 38999999999876553
Q ss_pred ecCCCCCcCCeEECCC
Q 004971 603 QSGSAGRANHPYFSPD 618 (721)
Q Consensus 603 ~~~~~~~~~~~~~SpD 618 (721)
. .-+.......+||
T Consensus 410 ~--~vG~~P~~i~~~~ 423 (426)
T 3c75_H 410 D--QLGRGPQIITTHD 423 (426)
T ss_dssp C--CCSSSCCEEECCC
T ss_pred c--CCCCCCcEEEcCC
Confidence 2 1233344666665
No 198
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.36 E-value=1.4e-07 Score=105.27 Aligned_cols=400 Identities=12% Similarity=0.078 Sum_probs=224.3
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCC-CCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPY-GVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI 253 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~ 253 (721)
.++.|+++.... ..|+.++++|...+.|... -..-...++.|...+|+++.... ...|++
T Consensus 90 ~~~~LY~tD~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~----------~~~I~r 150 (628)
T 4a0p_A 90 LGKNLYWADTGT---------NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG----------KPKIDR 150 (628)
T ss_dssp TTTEEEEEETTT---------TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS----------SCEEEE
T ss_pred CCCEEEEEECCC---------CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC----------CCEEEE
Confidence 477788865432 2899999988776655321 11223447888767888864221 368999
Q ss_pred EEcCCCceeEEEeccCCcc---eeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeec
Q 004971 254 FLTRDGTQRVKIVENGGWP---CWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP 329 (721)
Q Consensus 254 ~d~~~g~~~~l~~~~~~~~---~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 329 (721)
.++++...+.+.. ....| ++.++ +++|++. ...+ .|+.+...+.. . +.+.........+++
T Consensus 151 ~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD--~~~~--~I~~~d~dG~~-------~-~v~~~~l~~P~glav-- 215 (628)
T 4a0p_A 151 AAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTD--LDTN--LIESSNMLGLN-------R-EVIADDLPHPFGLTQ-- 215 (628)
T ss_dssp EETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEE--TTTT--EEEEEETTSCS-------C-EEEEECCSCEEEEEE--
T ss_pred EeCCCCceEEEEC-CCCCcceEEEccccCEEEEEE--CCCC--EEEEEcCCCCc-------e-EEeeccCCCceEEEE--
Confidence 9997777666553 33333 77775 5677742 2123 45544444432 2 222222222334555
Q ss_pred CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc--c------------CCC--------CcccCc------------
Q 004971 330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF--V------------SPK--------THHLNP------------ 375 (721)
Q Consensus 330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~--~------------~~~--------~~~~~~------------ 375 (721)
++.+|++.... ...|+..|..+|+.+.+... . .+. +.....
T Consensus 216 -~~~~ly~tD~~----~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 216 -YQDYIYWTDWS----RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp -ETTEEEEEETT----TTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred -ECCEEEEecCC----CCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence 56788876533 23488888766653222110 0 000 000001
Q ss_pred -----EEcCCCC-------EEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec-c--cCCCCceeCcCCCEEEEEe--
Q 004971 376 -----FISPDSS-------RVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF-R--FDGSFPSFSPKGDRIAFVE-- 437 (721)
Q Consensus 376 -----~~Spdg~-------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~SpDG~~la~~~-- 437 (721)
...+|++ .|+|+. . ..+....+..... ..... . .....+.|.+.+.+|+++.
T Consensus 291 C~~g~~l~~d~~~C~~~~~~Ll~s~-~---------~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~ 360 (628)
T 4a0p_A 291 CPAHYSLNADNRTCSAPTTFLLFSQ-K---------SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360 (628)
T ss_dssp CSTTCEECTTSSCEECCSSEEEEEE-T---------TEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETT
T ss_pred cCCCcEecccCCcCccccceeeeec-c---------ceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecC
Confidence 1122221 111111 0 1122222221110 11110 0 1122357777777888884
Q ss_pred CCcEEEEECCCCceEEEe-e--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 438 FPGVYVVNSDGSNRRQVY-F--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~-~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
...|+.+++++.....+. . ..+..+++.+.++.|+++.. ... .|...+.++. ..+.+..
T Consensus 361 ~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~------~~~--~I~v~~~~G~----~~~~l~~ 428 (628)
T 4a0p_A 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE------ATN--VINVTRLDGR----SVGVVLK 428 (628)
T ss_dssp TTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET------TTT--EEEEEETTSC----EEEEEEE
T ss_pred cceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC------CCC--EEEEEECCCC----eEEEEEe
Confidence 567999998876644443 2 24568899999999999852 223 4555555553 3334433
Q ss_pred C-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 509 N-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 509 ~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
. ......+++.|...+|+++.......+|++.++++.. ...+. ..-.....++++++++.|+++.... .
T Consensus 429 ~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~---~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~------~ 499 (628)
T 4a0p_A 429 GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE---REVLFFSGLSKPIALALDSRLGKLFWADSDL------R 499 (628)
T ss_dssp CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------T
T ss_pred CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC---cEEEEeccCCCccEEEEeCCCCEEEEEeCCC------C
Confidence 2 3567788999977788888754322389999998665 33333 2333457899999999999998753 3
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEecc
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQ 663 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~ 663 (721)
.|+.+++++...+.+... .......++. ++.+|+++..... .|+++|..+|+ .+.|..
T Consensus 500 ~I~~~~~dG~~r~~~~~~-~~~~P~glav--~~~~ly~tD~~~~----------------~i~~~~k~~G~~~~~i~~ 558 (628)
T 4a0p_A 500 RIESSDLSGANRIVLEDS-NILQPVGLTV--FENWLYWIDKQQQ----------------MIEKIDMTGREGRTKVQA 558 (628)
T ss_dssp EEEEEETTSCSCEEEECS-SCSCEEEEEE--ETTEEEEEETTTT----------------EEEEEETTSSSCCEEEEC
T ss_pred EEEEEeCCCCceEEEEcC-CCCCcEEEEE--ECCEEEEEECCCC----------------eEEEEECcCCCCcEEEec
Confidence 899999988766655432 1222334444 4568888776543 49999987554 455543
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.33 E-value=5.5e-10 Score=113.31 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=152.6
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
+.+.+.........++|+| +|+.|++.... ...|++||.+++ ...+.. +......++++|||+.++. . .
T Consensus 19 ~~~~l~~~~~~~eg~~~d~-~g~~l~~~~~~----~~~i~~~~~~~~-~~~~~~---~~~~~~~l~~~~dg~l~v~-~-~ 87 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVP-ARSAVIFSDVR----QNRTWAWSDDGQ-LSPEMH---PSHHQNGHCLNKQGHLIAC-S-H 87 (296)
T ss_dssp CCEEEECCCSSEEEEEEEG-GGTEEEEEEGG----GTEEEEEETTSC-EEEEES---SCSSEEEEEECTTCCEEEE-E-T
T ss_pred cEEEEecCCccccCCeEeC-CCCEEEEEeCC----CCEEEEEECCCC-eEEEEC---CCCCcceeeECCCCcEEEE-e-c
Confidence 3444444444556899999 99977776543 335999999887 444432 3445667899999985433 2 2
Q ss_pred CCCCCCCCcceeEEEeccCCCCc-ceec-----ccCCCCceeCcCCCEEEEEe------------------CCcEEEEEC
Q 004971 391 GGSTREDGNNQLLLENIKSPLPD-ISLF-----RFDGSFPSFSPKGDRIAFVE------------------FPGVYVVNS 446 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~SpDG~~la~~~------------------~~~l~v~d~ 446 (721)
.. ..+++.+..++... +... ......++++|||+.++... ...|+.++.
T Consensus 88 ~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 88 GL-------RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp TT-------TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred CC-------CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 22 24666665433211 1100 01234578999997544311 347888888
Q ss_pred CCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEcccCCCCCcceEEccCCC
Q 004971 447 DGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTTNGKNNAFPSVSPDGK 523 (721)
Q Consensus 447 ~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~SpDg~ 523 (721)
+ ++...+. ......++|+|||+.+ ++.. ....+.+|.++..+. . ...+.+.........+++++||+
T Consensus 161 ~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~------~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 161 D-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDT------GDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp T-SCEEEEECCCSSEEEEEECTTSCEE-EEET------TTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred C-CCEEEeecCCCCCccEEECCCCCEE-EEeC------CCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECCCCC
Confidence 7 5555554 3345689999999999 6542 345666666653221 0 01223322234566789999998
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEE-ccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW-SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|+++. ...|++|+.+ |+. +..+..... +..++| +||++.|+++..+ .|++++..+++.+
T Consensus 231 -l~v~~----~~~v~~~~~~-g~~--~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~--------~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 231 -IWASA----GDGVHVLTPD-GDE--LGRVLTPQT-TSNLCFGGPEGRTLYMTVST--------EFWSIETNVRGLE 290 (296)
T ss_dssp -EEEEE----TTEEEEECTT-SCE--EEEEECSSC-CCEEEEESTTSCEEEEEETT--------EEEEEECSCCBCC
T ss_pred -EEEEc----CCeEEEECCC-CCE--EEEEECCCC-ceeEEEECCCCCEEEEEcCC--------eEEEEEccccccc
Confidence 44444 4579999997 443 455544444 678899 6999999988875 7999999887654
No 200
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.33 E-value=2.4e-10 Score=118.14 Aligned_cols=248 Identities=12% Similarity=0.069 Sum_probs=150.1
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ce-ecccCCCCceeCcCCCEEEEEeC-----CcE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-IS-LFRFDGSFPSFSPKGDRIAFVEF-----PGV 441 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~SpDG~~la~~~~-----~~l 441 (721)
......++|+|+|+ |++..... ..++.++..++... +. ........++++|||+.++.... ..|
T Consensus 44 ~~~~~~~~~~~~g~-l~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQ-LFLLDVFE--------GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp CCCEEEEEECTTSC-EEEEETTT--------CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred CccccCcEECCCCC-EEEEECCC--------CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 33456789999998 55433222 34777776554221 11 11122345789999976555433 489
Q ss_pred EEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971 442 YVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP 516 (721)
Q Consensus 442 ~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 516 (721)
+++|.+++....+. ...+..+.++|+|+.++....+. ..+....||.++.++. ....+.........+
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i 187 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY---STNPLGGVYYVSPDFR----TVTPIIQNISVANGI 187 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB---TTBCCEEEEEECTTSC----CEEEEEEEESSEEEE
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc---ccCCCceEEEEeCCCC----EEEEeecCCCcccce
Confidence 99999988876443 22456789999997554432110 1123568888887653 444443332345678
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCC-Ccc-cce-----EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEG-YGL-----HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~-~~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~ 589 (721)
+|+|||++|++.... ...|++||+++ +.. ... ..+.. ......+++++||+.++...... .|+
T Consensus 188 ~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~-------~v~ 257 (333)
T 2dg1_A 188 ALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQG-------RVL 257 (333)
T ss_dssp EECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTT-------EEE
T ss_pred EECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCC-------EEE
Confidence 999999988887643 45799999863 331 100 01111 12346789999998444443332 799
Q ss_pred EEecCCCceEEeeecCCCC------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 590 LIHPNGTGLRKLIQSGSAG------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 590 ~~d~~~~~~~~l~~~~~~~------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
+||.++.....+.. ... ....++|+|||+.|++++.....+ ....||.+++..
T Consensus 258 ~~d~~g~~~~~~~~--~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~-----------~~~~l~~~~~~~ 316 (333)
T 2dg1_A 258 VFNKRGYPIGQILI--PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMG-----------GGSMLYTVNGFA 316 (333)
T ss_dssp EECTTSCEEEEEEC--TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGT-----------CCEEEEEEECSS
T ss_pred EECCCCCEEEEEEc--CCCccccccCcceEEECCCCCEEEEEeCccCCC-----------CCceEEEEeccc
Confidence 99986544444432 221 467899999999998877764210 023588888654
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=7.5e-10 Score=114.16 Aligned_cols=272 Identities=9% Similarity=0.018 Sum_probs=162.3
Q ss_pred CCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee-cc
Q 004971 344 SSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FR 418 (721)
Q Consensus 344 ~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 418 (721)
..+..|.++|.++++...-.... ........+.+ ++++++.+.... ..+.+.+..+....-+. ..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~--------~~v~viD~~t~~~~~~i~~~ 83 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNS--------HVIFAIDINTFKEVGRITGF 83 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGG--------TEEEEEETTTCCEEEEEECC
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCC--------CEEEEEECcccEEEEEcCCC
Confidence 44677999999998754321100 00111223444 467777765533 34677776654221111 12
Q ss_pred cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceE-EEe-ec------CceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971 419 FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRR-QVY-FK------NAFSTVWDPVREAVVYTSGGPEFASESSEVD 488 (721)
Q Consensus 419 ~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~-~l~-~~------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 488 (721)
.....+++++|| ++++.. .+.|+++|+.+++.. .+. .. ....+++ ++++|+++..+ .++ .
T Consensus 84 ~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-----~~~--~ 153 (328)
T 3dsm_A 84 TSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-----YQN--R 153 (328)
T ss_dssp SSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-----TCC--E
T ss_pred CCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-----CCC--E
Confidence 234557888998 666665 688999999988754 344 22 4556777 67788777521 133 4
Q ss_pred EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-C-------ceeEEEEECCCCcccceEECcCC-CcC
Q 004971 489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-G-------YKNLYIMDAEGGEGYGLHRLTEG-PWS 559 (721)
Q Consensus 489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g-------~~~l~~~d~~~g~~~~~~~l~~~-~~~ 559 (721)
|+.++..+. .....+.. ......++++|||+ +++..... . ...|+++|.++++. ...+... ...
T Consensus 154 v~viD~~t~---~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~~~~~~~g~~ 226 (328)
T 3dsm_A 154 ILKIDTETD---KVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EKQFKFKLGDW 226 (328)
T ss_dssp EEEEETTTT---EEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EEEEECCTTCC
T ss_pred EEEEECCCC---eEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE--EEEEecCCCCC
Confidence 555665543 12333433 33556789999998 45454321 0 25899999998874 3333321 124
Q ss_pred ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~ 638 (721)
...++|+|||+.|+++.. .|+++|+++++......... ......++++|++..|+++...+
T Consensus 227 p~~la~~~d~~~lyv~~~---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~--------- 288 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINN---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID--------- 288 (328)
T ss_dssp CEEEEECTTSCEEEEESS---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT---------
T ss_pred ceeEEEecCCCEEEEEcc---------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc---------
Confidence 578999999998887643 59999998887532111101 24566789999877777765211
Q ss_pred CCCCCCCccEEEEEcCCCCeEEecc
Q 004971 639 PHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
|.....|++||.+++..+.+.-
T Consensus 289 ---y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 289 ---YQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp ---SSSEEEEEEECTTCCEEEEEEE
T ss_pred ---cccCCEEEEECCCCCEEEEEEe
Confidence 0012369999999555566653
No 202
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=2e-10 Score=119.06 Aligned_cols=285 Identities=7% Similarity=-0.077 Sum_probs=159.6
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC--CCCCCcceeEEEeccCCCC--cceec------
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS--TREDGNNQLLLENIKSPLP--DISLF------ 417 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~~~~~~~~l~~~~~~~~~~--~~~~~------ 417 (721)
.+.++|.++++...-... +... ++++||||++++++...... .+.. ...+.++|+.+... .+...
T Consensus 47 ~vsvID~~t~~v~~~i~v---G~~P-~i~~spDg~~lyVan~~~~r~~~G~~-~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG---AFLS-LAVAGHSGSDFALASTSFARSAKGKR-TDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEE---CTTC-EEEECTTSSCEEEEEEEETTTTSSSE-EEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeC---CCCC-ceEECCCCCEEEEEcccccccccCCC-CCEEEEEECCCCCEEEEEECCCccccc
Confidence 799999999875432221 1223 69999999999987642110 0000 14577777765532 11111
Q ss_pred -ccCCCCceeCcCCCEEEEEe---CCcEEE--EECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 418 -RFDGSFPSFSPKGDRIAFVE---FPGVYV--VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 418 -~~~~~~~~~SpDG~~la~~~---~~~l~v--~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
......+++||||+++++.. ...+.+ +|+.+ ...+..+.. +...|+|+..++.. ..++++.+.+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~--~~~~p~g~~~~~~~------~~dg~~~~vd 191 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASC--FHIHPGAAATHYLG------SCPASLAASD 191 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSC--CCCEEEETTEEECC------CCTTSCEEEE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCc--eEEccCCCeEEEEE------cCCCCEEEEE
Confidence 02356789999999998884 346777 78766 444442222 23456666665543 1234443333
Q ss_pred EEccC--CCCccceEE-cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----------Cc
Q 004971 492 INVDD--VDGVSAVRR-LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----------PW 558 (721)
Q Consensus 492 ~~~~~--~~~~~~~~~-l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----------~~ 558 (721)
++... . ++... .+..-.....|..+++++.+++.+. ..++.+|..++..+.+..+... +.
T Consensus 192 ~~~~~~~~---~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 192 LAAAPAAA---GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp CCSSCCCC---EECCCCSCTTSCBCSCCEEETTTTEEEECBS----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred CccccccC---CeEEEEeeeeeeCCCCccccccCCEEEEEcC----CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 22200 0 01100 0000000011213888898888885 5799999976542212222111 01
Q ss_pred CceeeEEccCCCEEEEEEc-c-CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe-cCCCcCCC
Q 004971 559 SDTMCNWSPDGEWIAFASD-R-DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD-YGGISAEP 635 (721)
Q Consensus 559 ~~~~~~~SpDG~~l~~~~~-~-~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~ 635 (721)
....++++|||++|++... . .........+.++|+++++...-... ......++|+|||++++++.. ..+
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~~~~~----- 337 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTE----- 337 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTT-----
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEccCCCC-----
Confidence 1122689999999998754 1 00000012566999999876654432 235788999999998888777 343
Q ss_pred CCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCcee
Q 004971 636 ISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAW 673 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~ 673 (721)
.|.++|+++.++. +|.- +......++
T Consensus 338 -----------~VsVID~~t~kvv~~I~v-g~~P~~i~~ 364 (368)
T 1mda_H 338 -----------VLDIYDAASDQDQSSVEL-DKGPESLSV 364 (368)
T ss_dssp -----------EEEEEESSSCEEEEECCC-CSCCCEEEC
T ss_pred -----------eEEEEECCCCcEEEEEEC-CCCCCEEEe
Confidence 5999999998765 4443 333333443
No 203
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=5.4e-10 Score=113.98 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=142.3
Q ss_pred CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971 370 THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG 448 (721)
Q Consensus 370 ~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~ 448 (721)
....++.|+|+|+.|++....+ ..++.++..+....+.........+++++||+.++... ...|++++.+
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~--------~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVG--------RRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTT--------TEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCccCCeEeCCCCEEEEEECCC--------CEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3455799999999888865433 34666665333222222222234578999998544442 4689999987
Q ss_pred CceEEEe-e------cCceeeEEcCCCCeEEEEec--C-------CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971 449 SNRRQVY-F------KNAFSTVWDPVREAVVYTSG--G-------PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512 (721)
Q Consensus 449 g~~~~l~-~------~~~~~~~~spdg~~la~~~~--~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 512 (721)
++.+.+. . ..+..+.++|||+ ++++.. + ...........||.++.+++ ....+. ....
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g----~~~~~~-~~~~ 189 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS----PLQRMA-DLDH 189 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC----CCEEEE-EESS
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCC----cEEEEe-cCCC
Confidence 5555554 1 2356799999997 444310 0 00011123468899987543 444444 3235
Q ss_pred CcceEEccCCCEEEEEEeeC---CceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 513 NAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
...++|+|||+.|++..... +...|++++++++.......+. ........++++++|+ |+++... .|
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~--------gv 260 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT--------GV 260 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS--------EE
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC--------cE
Confidence 56789999999998886531 1268999998754321111111 1223345789999999 5544432 59
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
++|+.++.....+.. ......++|+||++.|++++..
T Consensus 261 ~~~~~~g~~~~~~~~---~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 261 CVFDSDGQLLGHIPT---PGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EEECTTSCEEEEEEC---SSCCCEEEECTTSCEEEEEETT
T ss_pred EEECCCCCEEEEEEC---CCceeEEEEeCCCCEEEEEcCC
Confidence 999997654444432 2357889999999999887764
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=8.5e-10 Score=113.65 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=144.8
Q ss_pred cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceE
Q 004971 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR 452 (721)
Q Consensus 373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~ 452 (721)
.++.|+|+++.+++....+ ..++.++..++.............++|++||+.++. ....|+++|.++++.+
T Consensus 52 egp~~~~~~~~l~~~d~~~--------~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~-~~~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILE--------RELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLT 122 (326)
T ss_dssp EEEEEETTTTEEEEEEGGG--------TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEE
T ss_pred cCCeEeCCCCEEEEEECCC--------CEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEE-ECCCEEEEECCCCcEE
Confidence 4689999988888875443 357777766542221122223445688999975554 4667999999988876
Q ss_pred EEee-------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971 453 QVYF-------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI 525 (721)
Q Consensus 453 ~l~~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l 525 (721)
.+.. ..+..+.++|+|+. +++..... .......||.++ ++ ....+.........++|+|||+.|
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~--~~~~~~~l~~~~-~g-----~~~~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRK--AETGAGSIYHVA-KG-----KVTKLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCE-EEEEEETT--CCTTCEEEEEEE-TT-----EEEEEEEEESSEEEEEECTTSCEE
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCc--CCCCceEEEEEe-CC-----cEEEeeCCCcccCCeEEcCCCCEE
Confidence 6651 13457899999984 44432110 123456788888 43 444443332345678999999999
Q ss_pred EEEEeeCCceeEEEEECC--CC-ccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 526 VFRSTRTGYKNLYIMDAE--GG-EGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~--~g-~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
++.... ...|++++.+ +| +.. ....+.........++++++|+..+...... .|++|+.++....
T Consensus 194 yv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~-------~v~~~d~~g~~~~ 264 (326)
T 2ghs_A 194 YFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG-------AVDRYDTDGNHIA 264 (326)
T ss_dssp EEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT-------EEEEECTTCCEEE
T ss_pred EEEECC--CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC-------EEEEECCCCCEEE
Confidence 887643 4689999986 56 421 1222222233346789999997443333222 7999998544333
Q ss_pred EeeecCCCCCcCCeEEC-CCCCEEEEEEecCC
Q 004971 600 KLIQSGSAGRANHPYFS-PDGKSIVFTSDYGG 630 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~ 630 (721)
.+.. ....+..++|+ ||++.|++++...+
T Consensus 265 ~i~~--~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 265 RYEV--PGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEC--SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEC--CCCCcEEEEEecCCCCEEEEEecCCC
Confidence 3332 33457789998 99999988877664
No 205
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.23 E-value=2.8e-09 Score=110.02 Aligned_cols=245 Identities=11% Similarity=0.013 Sum_probs=146.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....++|+| +|+ |++.... ...|++||+++++.+.+.. .....+..++++|||+.++.. ..... ...
T Consensus 46 ~~~~~~~~~-~g~-l~~~~~~----~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~l~v~~-~~~~~----~~~ 112 (333)
T 2dg1_A 46 QLEGLNFDR-QGQ-LFLLDVF----EGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCY-LGDFK----STG 112 (333)
T ss_dssp CEEEEEECT-TSC-EEEEETT----TCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEE-CTTSS----SCC
T ss_pred cccCcEECC-CCC-EEEEECC----CCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCcEEEEe-CCCCC----CCc
Confidence 446788999 998 5554322 3459999999887655432 224456788999999755443 22200 002
Q ss_pred eeEEEeccCCCCc-cee---cccCCCCceeCcCCCEEEEEe-------CCcEEEEECCCCceEEEe--ecCceeeEEcCC
Q 004971 401 QLLLENIKSPLPD-ISL---FRFDGSFPSFSPKGDRIAFVE-------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPV 467 (721)
Q Consensus 401 ~l~~~~~~~~~~~-~~~---~~~~~~~~~~SpDG~~la~~~-------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spd 467 (721)
.++..+..+.... +.. .......+.++|||+.++... ...|+.++.++++...+. ...+..++|+||
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD 192 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCC
Confidence 4677776554322 111 011123468899997544433 257899998887766654 335678999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-----cccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-----LTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
|+.|+++.. ..+.+.+|+++.++. .... ..... .....+++++||+.++.... ...|++|
T Consensus 193 g~~l~v~~~------~~~~i~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---~~~v~~~ 259 (333)
T 2dg1_A 193 EKVLWVTET------TANRLHRIALEDDGV----TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---QGRVLVF 259 (333)
T ss_dssp SSEEEEEEG------GGTEEEEEEECTTSS----SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET---TTEEEEE
T ss_pred CCEEEEEeC------CCCeEEEEEecCCCc----CcccccceEEEecCCCCCCCceEECCCCCEEEEEcC---CCEEEEE
Confidence 999888752 234566665543322 1111 11111 24556899999984443332 4579999
Q ss_pred ECCCCcccceEECcCCCc------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 541 DAEGGEGYGLHRLTEGPW------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
|.++.. +..+..... ....++|+|||+.|+++...... .....||.+++..
T Consensus 260 d~~g~~---~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~-~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 260 NKRGYP---IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEM-GGGSMLYTVNGFA 316 (333)
T ss_dssp CTTSCE---EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGG-TCCEEEEEEECSS
T ss_pred CCCCCE---EEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCC-CCCceEEEEeccc
Confidence 986433 444433221 35789999999999887765210 1235788887654
No 206
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=6.2e-10 Score=115.35 Aligned_cols=255 Identities=9% Similarity=0.001 Sum_probs=147.4
Q ss_pred CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-CC----CCcccCcEEcCCCCEEEEEEeeCCC
Q 004971 324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-SP----KTHHLNPFISPDSSRVGYHKCRGGS 393 (721)
Q Consensus 324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~~----~~~~~~~~~Spdg~~l~~~~~~~~~ 393 (721)
.+.+|| ||++++..... .|..+..|.++|+.+++...-.... .. ......+++||||++++.+.....
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~- 146 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS- 146 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS-
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC-
Confidence 699999 99998876531 1234567999999998854322111 00 134568999999999998765433
Q ss_pred CCCCCcceeEE--EeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCC-----CceEE-----Ee-ecC
Q 004971 394 TREDGNNQLLL--ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDG-----SNRRQ-----VY-FKN 458 (721)
Q Consensus 394 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~-----g~~~~-----l~-~~~ 458 (721)
..+.+ .|..+ ...+ +.... ..+.|+|++.++. .++.+.+++++. ++... +. ...
T Consensus 147 ------~~v~V~~iD~~t-v~~i---~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~ 215 (368)
T 1mda_H 147 ------AAAGLSVPGASD-DQLT---KSASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ 215 (368)
T ss_dssp ------CEEEEEETTTEE-EEEE---ECSSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred ------CeEEEEEEchhh-ceEE---ECCCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCC
Confidence 23444 44433 1111 11111 2345666555443 355666677765 32210 11 111
Q ss_pred ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------CC---CCCcceEEccCCCEEEEE
Q 004971 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------NG---KNNAFPSVSPDGKWIVFR 528 (721)
Q Consensus 459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~~---~~~~~~~~SpDg~~l~~~ 528 (721)
.. . ++++..+++++ . +.+ +.++..+.. ......+.. .. ......+++|||+++++.
T Consensus 216 P~--~-~~~~~~~~~vs-------~-~~V--~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 216 AA--Q-ANYPGMLVWAV-------A-SSI--LQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CE--E-ETTTTEEEECB-------S-SCC--EEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred cc--c-cccCCEEEEEc-------C-CEE--EEEECCCCc-ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 11 3 88888888876 2 344 444443210 000111111 11 111226899999999987
Q ss_pred EeeC-C-----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEEe
Q 004971 529 STRT-G-----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 529 s~~~-g-----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
.... + ...+.++|+++++. +..+.-+. ....++|+|||++++++.. .. ..|.++|+.+++..+.
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~------~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQDGASDNYANSAGT------EVLDIYDAASDQDQSS 352 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECCSSSCEEEEEETTT------TEEEEEESSSCEEEEE
T ss_pred eccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECCCCCEEEEEccCCC------CeEEEEECCCCcEEEE
Confidence 6523 2 23456999999875 66665443 3478999999998888776 22 3899999999887665
Q ss_pred eecCCCCCcCCeEEC
Q 004971 602 IQSGSAGRANHPYFS 616 (721)
Q Consensus 602 ~~~~~~~~~~~~~~S 616 (721)
.. .......+++.
T Consensus 353 I~--vg~~P~~i~~~ 365 (368)
T 1mda_H 353 VE--LDKGPESLSVQ 365 (368)
T ss_dssp CC--CCSCCCEEECC
T ss_pred EE--CCCCCCEEEee
Confidence 54 23344445444
No 207
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.8e-08 Score=104.69 Aligned_cols=275 Identities=11% Similarity=0.020 Sum_probs=151.6
Q ss_pred CCCEEEEEEecC---CCCeeeEEEEECCC-----CceEEeecccCCCCcccCcEE-----------c--CCCCEEEEEEe
Q 004971 331 NNKFIAVATRRP---TSSYRHIELFDLVK-----NKFIELTRFVSPKTHHLNPFI-----------S--PDSSRVGYHKC 389 (721)
Q Consensus 331 dG~~la~~~~~~---g~~~~~l~l~dl~t-----g~~~~l~~~~~~~~~~~~~~~-----------S--pdg~~l~~~~~ 389 (721)
..+.+++..-.. +.....|.+.|++. ++..............-+..| + +++++|+....
T Consensus 24 ~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l 103 (462)
T 2ece_A 24 PEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL 103 (462)
T ss_dssp CCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT
T ss_pred cceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC
Confidence 455444443332 23345688888886 443222211111212233445 7 88988887544
Q ss_pred eCCCCCCCCcceeEEEeccCCCCcceeccc-------------CCCCceeCcCCCEEEEE--eC------CcEEEEECCC
Q 004971 390 RGGSTREDGNNQLLLENIKSPLPDISLFRF-------------DGSFPSFSPKGDRIAFV--EF------PGVYVVNSDG 448 (721)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~SpDG~~la~~--~~------~~l~v~d~~~ 448 (721)
.. .+|++.+..+.......... ....+..+||| |++. ++ +.|.++|.++
T Consensus 104 ~s--------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 104 RS--------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp TT--------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CC--------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC
Confidence 33 46888887543222222110 11234678999 3333 22 6899999998
Q ss_pred CceE-EEe-e----cCceeeEEcCCCCeEEEEecC------CCCC------CCCCcEEEEEEEccCCCCccceEEcccCC
Q 004971 449 SNRR-QVY-F----KNAFSTVWDPVREAVVYTSGG------PEFA------SESSEVDIISINVDDVDGVSAVRRLTTNG 510 (721)
Q Consensus 449 g~~~-~l~-~----~~~~~~~~spdg~~la~~~~~------~~~~------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 510 (721)
.+.. .+. . .....+.|+|+++.++...-+ ..+. ....++.+|+++.. .....+....
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEeeEEecCC
Confidence 8754 333 1 223458889999966665311 0011 12466777766532 1334444431
Q ss_pred --CCCcce--EEccCCCEEEEEEe---eCCceeEEEEECCCCcccceEEC--cCC----------------CcCceeeEE
Q 004971 511 --KNNAFP--SVSPDGKWIVFRST---RTGYKNLYIMDAEGGEGYGLHRL--TEG----------------PWSDTMCNW 565 (721)
Q Consensus 511 --~~~~~~--~~SpDg~~l~~~s~---~~g~~~l~~~d~~~g~~~~~~~l--~~~----------------~~~~~~~~~ 565 (721)
.....+ +|+|||+++++... .+-...|++|..+.|+......+ ... ......+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 223334 45999999998876 11145565544444432111111 110 123467899
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCC---------------CCcCCeEECCCCCEEEEEE
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSA---------------GRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~---------------~~~~~~~~SpDG~~l~~~~ 626 (721)
||||++|+++.... ..|.++|+. .++.+.+...... +....+++||||++|+++.
T Consensus 329 S~DGrfLYVSnrg~------d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGI------GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTT------TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999998887653 379999985 3333322211111 1367899999999999877
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=5.1e-09 Score=106.72 Aligned_cols=243 Identities=10% Similarity=0.094 Sum_probs=144.8
Q ss_pred ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971 311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR 390 (721)
Q Consensus 311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 390 (721)
+++++.........+.|+| +|+.|++..... ..|++|+. +++...+.. +......++++++|+.+ ++..
T Consensus 36 ~~~~l~~~~~~~egp~~~~-~g~~l~~~d~~~----~~i~~~~~-~g~~~~~~~---~~~~~~gl~~d~dG~l~-v~~~- 104 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWE-AQRTLVWSDLVG----RRVLGWRE-DGTVDVLLD---ATAFTNGNAVDAQQRLV-HCEH- 104 (305)
T ss_dssp CCEEEECCCSSEEEEEEEG-GGTEEEEEETTT----TEEEEEET-TSCEEEEEE---SCSCEEEEEECTTSCEE-EEET-
T ss_pred ceEEEecCCcCccCCeEeC-CCCEEEEEECCC----CEEEEEeC-CCCEEEEeC---CCCccceeeECCCCCEE-EEEC-
Confidence 4555555544567899999 999888865433 34999998 555444332 23456678999999844 3332
Q ss_pred CCCCCCCCcceeEEEeccCCCCcceec-c----cCCCCceeCcCCCEEEEEe-------------------CCcEEEEEC
Q 004971 391 GGSTREDGNNQLLLENIKSPLPDISLF-R----FDGSFPSFSPKGDRIAFVE-------------------FPGVYVVNS 446 (721)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~SpDG~~la~~~-------------------~~~l~v~d~ 446 (721)
.. ..++..+..+....+... . .....++++|||+ |+++. ...|+.++.
T Consensus 105 ~~-------~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 105 GR-------RAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp TT-------TEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CC-------CEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 22 235555543221111100 0 1234578999997 44421 256999999
Q ss_pred CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCE
Q 004971 447 DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKW 524 (721)
Q Consensus 447 ~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~ 524 (721)
++++.+.+. ......++|+|||+.|+++..... ......+.+|.++..+ ....+.+.. .......++++++|+
T Consensus 177 ~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~-~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~- 251 (305)
T 3dr2_A 177 DGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQ-GHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGW- 251 (305)
T ss_dssp SSCCCEEEEEESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSC-
T ss_pred CCCcEEEEecCCCCcceEEcCCCCEEEEEecCCc-CCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCC-
Confidence 888766554 234567899999999988753100 0001345555444221 011122221 223456789999999
Q ss_pred EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
|++.. ...|++++.++.. +..+.... ....++|+||++.|+++... .||.+++
T Consensus 252 lwv~~----~~gv~~~~~~g~~---~~~~~~~~-~~~~~~f~~d~~~L~it~~~--------~l~~~~~ 304 (305)
T 3dr2_A 252 LWSSS----GTGVCVFDSDGQL---LGHIPTPG-TASNCTFDQAQQRLFITGGP--------CLWMLPL 304 (305)
T ss_dssp EEECC----SSEEEEECTTSCE---EEEEECSS-CCCEEEECTTSCEEEEEETT--------EEEEEEC
T ss_pred EEEec----CCcEEEECCCCCE---EEEEECCC-ceeEEEEeCCCCEEEEEcCC--------eEEEEEC
Confidence 55444 2359999996443 44444333 35789999999999988875 6888765
No 209
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.16 E-value=8.8e-09 Score=102.67 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=157.7
Q ss_pred CCEEEEEEecCCCCeeeEEEEECCCCceEEe---ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971 332 NKFIAVATRRPTSSYRHIELFDLVKNKFIEL---TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK 408 (721)
Q Consensus 332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l---~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 408 (721)
|.+|+|... ..|+.+++.+...+.+ .....+......++|+++++.|+++.... ..++..++.
T Consensus 1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~--------~~I~~~~~~ 66 (267)
T 1npe_A 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLH 66 (267)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESS
T ss_pred CcEEEEEcC------CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC--------CEEEEEecC
Confidence 456777542 2489999876543211 00011123455789999999998865433 357777766
Q ss_pred CCCCcceec-c-cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCC
Q 004971 409 SPLPDISLF-R-FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFA 481 (721)
Q Consensus 409 ~~~~~~~~~-~-~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~ 481 (721)
+........ . .....+++++++..|+++. ...|+++++++...+.+.. .....++++|++.+|+++..
T Consensus 67 g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~----- 141 (267)
T 1npe_A 67 GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW----- 141 (267)
T ss_dssp SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC-----
T ss_pred CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC-----
Confidence 543221111 1 1334578899888888884 5789999998776555541 35678899999999998863
Q ss_pred CCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971 482 SESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560 (721)
Q Consensus 482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~ 560 (721)
......|+.++.++. ..+.+.. .......++++||+++|+++... ...|+++|.+++. ...+.......
T Consensus 142 -~~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~---~~~~~~~~~~P 211 (267)
T 1npe_A 142 -NRDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPG---RRKVLEGLQYP 211 (267)
T ss_dssp -CSSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEE---EEEEEECCCSE
T ss_pred -CCCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCc---eEEEecCCCCc
Confidence 112346666766653 3333332 22456678999999999988753 4689999998654 22222222222
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
..+ .+|+..|+++.... ..|+++|.++++.......+.......++++||+-
T Consensus 212 ~gi--~~d~~~lyva~~~~------~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 212 FAV--TSYGKNLYYTDWKT------NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEE--EEETTEEEEEETTT------TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eEE--EEeCCEEEEEECCC------CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 334 45678888877653 37999999988765544322222467788888764
No 210
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.14 E-value=9e-10 Score=118.16 Aligned_cols=209 Identities=10% Similarity=0.015 Sum_probs=135.8
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCC--------C---ce------EEEe-ecCceeeEEcCCCCeEEEEec-CCCCC
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDG--------S---NR------RQVY-FKNAFSTVWDPVREAVVYTSG-GPEFA 481 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~--------g---~~------~~l~-~~~~~~~~~spdg~~la~~~~-~~~~~ 481 (721)
...+++++++..++..+...+.+++... . .. ..+. ...+..++|+|||++|++... +
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg---- 114 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS---- 114 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET----
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc----
Confidence 4557899999888888766687766421 0 11 1111 345789999999999996310 0
Q ss_pred CCCCcEEEEEEEccCCC--Cc-cc---eEEcccCCCCCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971 482 SESSEVDIISINVDDVD--GV-SA---VRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 482 ~~~~~~~i~~~~~~~~~--~~-~~---~~~l~~~~~~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
..++.++||++...... .. .. ...+..+...+..++|+|+ ++.|+..+. +..|++||+.++.. +....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~---Dg~v~iwD~~~~~~--~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA---DGSIAVLQVTETVK--VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET---TSCEEEEEESSSEE--EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC---CCeEEEEEcCCCcc--eeecc
Confidence 25688999987653100 00 01 2233334567888999998 788887776 78899999998753 32333
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC------CCCCcCCeEECCCCCEEEEEEec
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------SAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
.+...+..++|+|||++|+.+..++ .|++||+. ++........ +...+..+.|++++.+++.....
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg-------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNG-------TVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTS-------CEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCC-------cEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 3445678899999999999999875 89999998 4433322210 11256788999999888766654
Q ss_pred CCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 629 GGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.+.. .....+++|++...
T Consensus 262 dg~~----------~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTL----------ETSPDVVMALLPKK 279 (434)
T ss_dssp TCCS----------SSCCEEEEEECCCT
T ss_pred CCcc----------CCCCceEEEEeccC
Confidence 4321 11235888887654
No 211
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.14 E-value=4.1e-08 Score=97.74 Aligned_cols=215 Identities=11% Similarity=0.064 Sum_probs=142.4
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..++|+++++.|+++. ...|++++++++....+. . .....++++|++..|+++.. ..-.|+.++.++
T Consensus 39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--------~~~~I~~~~~~g 110 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------QLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--------TTTEEEEEETTS
T ss_pred EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC--------CCCEEEEEEcCC
Confidence 4578999888998884 678999999887765554 2 35678999999999998863 223455666655
Q ss_pred CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~ 574 (721)
. ..+.+.... .....++++|++.+|++.........|+++++++.. ...+. ........++++||++.|++
T Consensus 111 ~----~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 111 T----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp C----SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred C----CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEE
Confidence 3 333333222 456678999999999888753234689999987654 22222 22233578999999999998
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
+.... ..|++++++++..+.+.. .......+ .+|+..|+++....+ .|+++|.+
T Consensus 184 ~d~~~------~~I~~~~~~g~~~~~~~~--~~~~P~gi--~~d~~~lyva~~~~~----------------~v~~~d~~ 237 (267)
T 1npe_A 184 VDAGT------HRAECLNPAQPGRRKVLE--GLQYPFAV--TSYGKNLYYTDWKTN----------------SVIAMDLA 237 (267)
T ss_dssp EETTT------TEEEEEETTEEEEEEEEE--CCCSEEEE--EEETTEEEEEETTTT----------------EEEEEETT
T ss_pred EECCC------CEEEEEecCCCceEEEec--CCCCceEE--EEeCCEEEEEECCCC----------------eEEEEeCC
Confidence 88653 389999998765544433 12222334 456788888765543 49999998
Q ss_pred CCCe-EEeccCC-CCCCCceecCCc
Q 004971 655 GSDL-KRLTQNS-FEDGTPAWGPRF 677 (721)
Q Consensus 655 ~~~~-~~lt~~~-~~~~~~~~sp~~ 677 (721)
+++. +.+.... ......++.|+.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCceEEEccccccccceeeecCcc
Confidence 7764 4554322 124556666553
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=4.8e-09 Score=107.95 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=136.6
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
..+.|+|+++.++++. ...|++++.++++.+.+. ...+..+.|+|||+.++... . .|+.++..++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~---------~--gl~~~d~~~g- 119 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD---------D--GLFLRDTATG- 119 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET---------T--EEEEEETTTC-
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC---------C--CEEEEECCCC-
Confidence 4579999988888884 678999999988766555 45677899999998666531 1 2777776553
Q ss_pred CccceEEcccCC-----CCCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971 499 GVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG 569 (721)
Q Consensus 499 ~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG 569 (721)
..+.+.... .....++++|||+. ++..... ....||+++ +++ +..+.........++|+|||
T Consensus 120 ---~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 120 ---VLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp ---CEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECTTS
T ss_pred ---cEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcCCC
Confidence 444443321 23456889999984 4444321 246899999 465 44443322234679999999
Q ss_pred CEEEEEEccCCCCCCceeEEEEecC--CC-ce---EEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCC
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPN--GT-GL---RKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~--~~-~~---~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 642 (721)
+.|+++.... ..|++++++ ++ +. +.+... ........+.++++|..++ +....+
T Consensus 191 ~~lyv~~~~~------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv-a~~~~~------------ 251 (326)
T 2ghs_A 191 TTGYFVDTKV------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN-ARWGEG------------ 251 (326)
T ss_dssp CEEEEEETTT------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE-EEETTT------------
T ss_pred CEEEEEECCC------CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE-EEeCCC------------
Confidence 9998886542 389999986 55 32 222211 1123456788999997443 333222
Q ss_pred CCCccEEEEEcCCCCeEEeccCCCCCCCceec-CC
Q 004971 643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG-PR 676 (721)
Q Consensus 643 ~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s-p~ 676 (721)
.|++||.++.....+.........++|+ |+
T Consensus 252 ----~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 252 ----AVDRYDTDGNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp ----EEEEECTTCCEEEEEECSCSBEEEEEEESTT
T ss_pred ----EEEEECCCCCEEEEEECCCCCcEEEEEecCC
Confidence 4999999766556666544445678887 65
No 213
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.13 E-value=1.3e-08 Score=104.76 Aligned_cols=240 Identities=10% Similarity=-0.033 Sum_probs=143.6
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
++++++..... ...|.++|.++++...... .......++++++| +|+++... . ..+.+.++.+.
T Consensus 52 ~~~~lyv~~~~----~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g-~lyv~~~~-~-------~~v~~iD~~t~ 115 (328)
T 3dsm_A 52 RDGIGWIVVNN----SHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDE-KAYVTQIW-D-------YRIFIINPKTY 115 (328)
T ss_dssp ETTEEEEEEGG----GTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETT-EEEEEEBS-C-------SEEEEEETTTT
T ss_pred ECCEEEEEEcC----CCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCC-eEEEEECC-C-------CeEEEEECCCC
Confidence 56677766543 3459999999988533221 13456678899998 66665422 2 34677776554
Q ss_pred CCc-ceeccc------CCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971 411 LPD-ISLFRF------DGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGP 478 (721)
Q Consensus 411 ~~~-~~~~~~------~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~ 478 (721)
... ...... ....+++ ++.+|++.. ...|.++|+++++.. .+. ......+.++|||+ +++++.+.
T Consensus 116 ~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~ 192 (328)
T 3dsm_A 116 EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGG 192 (328)
T ss_dssp EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCB
T ss_pred eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCC
Confidence 211 111111 2344566 566776663 568999999988754 343 34567889999997 55555321
Q ss_pred CCC--CCCCcEEEEEEEccCCCCccceE-EcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971 479 EFA--SESSEVDIISINVDDVDGVSAVR-RLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554 (721)
Q Consensus 479 ~~~--~~~~~~~i~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~ 554 (721)
... .......|+.++..+. ++. .+... ......++|+||+++|++... .|+++|..+++......+.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~----~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~ 263 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETF----TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLE 263 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTT----EEEEEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBC
T ss_pred ccCCccccCCceEEEEECCCC----eEEEEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeec
Confidence 000 0001256777777653 332 33322 235778999999999887642 8999999988731111122
Q ss_pred CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
........++++|++..|+++..... .....|++||.+ ++....
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTS--SSEEEEEEECTT-CCEEEE
T ss_pred CCCCceEEEEEcCCCCeEEEEccccc--ccCCEEEEECCC-CCEEEE
Confidence 11234567899998777887762110 123589999998 554433
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.11 E-value=8.8e-09 Score=104.45 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=137.8
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....+.|+| ++..|++..... ..|+.||.++++...+.. ...+..+++++||+ |++.. . .
T Consensus 14 ~~Egp~w~~-~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~dG~-l~v~~-~---------~ 73 (297)
T 3g4e_A 14 CGESPVWEE-VSNSLLFVDIPA----KKVCRWDSFTKQVQRVTM----DAPVSSVALRQSGG-YVATI-G---------T 73 (297)
T ss_dssp BEEEEEEET-TTTEEEEEETTT----TEEEEEETTTCCEEEEEC----SSCEEEEEEBTTSS-EEEEE-T---------T
T ss_pred cccCCeEEC-CCCEEEEEECCC----CEEEEEECCCCcEEEEeC----CCceEEEEECCCCC-EEEEE-C---------C
Confidence 345789999 988898865432 459999999887543321 34567789999999 44432 1 2
Q ss_pred eeEEEeccCCCC-cceecc-----cCCCCceeCcCCCEEEEE-e-----------CCcEEEEECCCCceEEEe--ecCce
Q 004971 401 QLLLENIKSPLP-DISLFR-----FDGSFPSFSPKGDRIAFV-E-----------FPGVYVVNSDGSNRRQVY--FKNAF 460 (721)
Q Consensus 401 ~l~~~~~~~~~~-~~~~~~-----~~~~~~~~SpDG~~la~~-~-----------~~~l~v~d~~~g~~~~l~--~~~~~ 460 (721)
.++..+..++.. .+.... .....++++|||+.++.. . ...|+.++.++ +...+. .....
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pn 152 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISN 152 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccccc
Confidence 356666544311 111110 012346889999844333 1 13577777654 433333 33456
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc---cCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l 537 (721)
.++|+|||+.|+++.. ..+.+.+|+++...+ .....+.+. ........+++++||+ |+++... ...|
T Consensus 153 gi~~spdg~~lyv~~~------~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~--~~~v 222 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDS------LSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN--GGRV 222 (297)
T ss_dssp EEEECTTSCEEEEEEG------GGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET--TTEE
T ss_pred ceEEcCCCCEEEEecC------CCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC--CCEE
Confidence 8999999999988752 345566666542322 000112222 2223456689999996 5544432 4579
Q ss_pred EEEECCCCcccceEECcCCCcCceeeEEc-cCCCEEEEEEccC
Q 004971 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWS-PDGEWIAFASDRD 579 (721)
Q Consensus 538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~S-pDG~~l~~~~~~~ 579 (721)
++||.++|+. +..+......+..++|+ ||++.|+++....
T Consensus 223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 9999998875 44444443456789998 9999999988753
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.04 E-value=4.5e-08 Score=103.91 Aligned_cols=230 Identities=12% Similarity=0.027 Sum_probs=140.4
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
...++++| +|+ |++... ....|++||+++++...+... ..... ++|+|+|+.|+.....+. ..
T Consensus 133 P~~la~d~-~g~-lyv~d~----~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~-------~~ 195 (409)
T 3hrp_A 133 MWGIAAVG-NNT-VLAYQR----DDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGT-------HT 195 (409)
T ss_dssp EEEEEECS-TTE-EEEEET----TTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTT-------CE
T ss_pred ceEEEEeC-CCC-EEEEec----CCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCC-------ce
Confidence 35678899 997 655433 234599999998876655432 22233 999999998887654443 25
Q ss_pred eEEEeccCCCCccee------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE----ee---cC-ce-eeEEc
Q 004971 402 LLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV----YF---KN-AF-STVWD 465 (721)
Q Consensus 402 l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l----~~---~~-~~-~~~~s 465 (721)
++..+..+....... .......++++|++..|++.. .+.|++++.+++....+ .. +. .. .++|+
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 677766544321111 112345679999666777764 56799999998876555 21 11 23 89999
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---------------CCCcceEEccCCCEEEEEEe
Q 004971 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---------------KNNAFPSVSPDGKWIVFRST 530 (721)
Q Consensus 466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~~SpDg~~l~~~s~ 530 (721)
|++..|+++.. ....|+.++.++. ...+.... .....++++|||+ |+++..
T Consensus 276 p~~g~lyv~d~--------~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 276 FVDSNFYMSDQ--------NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp TTTTEEEEEET--------TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCCEEEEEeC--------CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 98888888752 2335666665542 22222211 2345689999998 555542
Q ss_pred eCCceeEEEEECCCCcccceEECcCC---------------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971 531 RTGYKNLYIMDAEGGEGYGLHRLTEG---------------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593 (721)
Q Consensus 531 ~~g~~~l~~~d~~~g~~~~~~~l~~~---------------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~ 593 (721)
.+...|+++++.+|+ +..+... -.....++++||| .|+++.... ..|+++++
T Consensus 342 -~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n------~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWG------KAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTT------CEEEEEEE
T ss_pred -CCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCC------CeEEEEEe
Confidence 136789999977776 4433321 0124567888885 455555432 25666654
No 216
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=3.7e-09 Score=113.78 Aligned_cols=138 Identities=10% Similarity=0.036 Sum_probs=82.7
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP 581 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 581 (721)
....+.+||||+++++.... ..++.++|.++.+. ....++..+.+ ..+.+|+||| .++.+..-.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~ld-- 351 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFLD-- 351 (595)
T ss_dssp SCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETTT--
T ss_pred CceEEEEcCCCCEEEEeCCC--CCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEecC--
Confidence 56778999999999887653 56899999985420 11334443333 4789999999 665555432
Q ss_pred CCCceeEEEEecCC----------CceEEeeecC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCcc
Q 004971 582 GSGSFEMYLIHPNG----------TGLRKLIQSG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647 (721)
Q Consensus 582 ~~~~~~i~~~d~~~----------~~~~~l~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (721)
.+|-+||+++ .+...-.... |........++|||++|+.+......++-+ .+| .+|. .
T Consensus 352 ----sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~-~gp--~~~~-~ 423 (595)
T 1fwx_A 352 ----SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN-VGP--LKPE-N 423 (595)
T ss_dssp ----TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC-CCS--SCCE-E
T ss_pred ----CcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc-CCC--CCCC-c
Confidence 3788899876 2332222211 011113456799999998776654322100 111 1111 2
Q ss_pred EEEEEcCCCCeEEecc
Q 004971 648 IFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 648 l~~~d~~~~~~~~lt~ 663 (721)
-.++|+.+++++.+-+
T Consensus 424 ~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 424 DQLIDISGDKMVLVHD 439 (595)
T ss_dssp EEEEECSSSSCEEEEE
T ss_pred ceEEEcCCCcEEEEEE
Confidence 2567888888877765
No 217
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=3.8e-09 Score=113.66 Aligned_cols=270 Identities=11% Similarity=0.020 Sum_probs=155.4
Q ss_pred cccCcee-e-cCCCCEEEEEEecC-------------CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971 321 HAFTPAT-S-PGNNKFIAVATRRP-------------TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG 385 (721)
Q Consensus 321 ~~~~~~~-s-p~dG~~la~~~~~~-------------g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~ 385 (721)
..+.+++ + | ++++++...... ...+..+.++|.++.+....... ++.....++||||++++
T Consensus 135 ~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V---gg~pd~~~~spdGk~~~ 210 (595)
T 1fwx_A 135 GIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAF 210 (595)
T ss_dssp SEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEE
T ss_pred CCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe---CCCccceEECCCCCEEE
Confidence 4456665 5 9 999986653211 13456789999998764322211 22556789999999999
Q ss_pred EEEeeCCCCC------CCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC--Cc--eEEEe
Q 004971 386 YHKCRGGSTR------EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG--SN--RRQVY 455 (721)
Q Consensus 386 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~--g~--~~~l~ 455 (721)
.++....... ......+.+.+.. +.....++|+++.. +.+.++|..+ ++ ...+.
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~-------------~~~~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ip 274 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIA-------------EIEKAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIP 274 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHH-------------HHHHHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEE
T ss_pred EEecCcccCcchhhccccccceEEEeecc-------------ceeEeccCCCeeEE---CcEEEEeCcccCCceeEEEEe
Confidence 8776653210 0000111111111 11234566765443 5699999987 43 34555
Q ss_pred -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC-----CCC-cc-ceEEcccCCCCCcceEEccCCCEEEE
Q 004971 456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD-----VDG-VS-AVRRLTTNGKNNAFPSVSPDGKWIVF 527 (721)
Q Consensus 456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~~-~~~~l~~~~~~~~~~~~SpDg~~l~~ 527 (721)
......+.+||||++++++.. ..+.+.++++.... ... .. ....+.. +....+.+|+||| ++++
T Consensus 275 vg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~ 346 (595)
T 1fwx_A 275 IANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYT 346 (595)
T ss_dssp EESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEE
T ss_pred cCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEE
Confidence 557788999999999999863 45677777766321 000 00 1122222 2467788999999 7666
Q ss_pred EEeeCCceeEEEEECCCCc--------ccceEECcCCCc-----CceeeEEccCCCEEEEEEccC-CC-----CCCceeE
Q 004971 528 RSTRTGYKNLYIMDAEGGE--------GYGLHRLTEGPW-----SDTMCNWSPDGEWIAFASDRD-NP-----GSGSFEM 588 (721)
Q Consensus 528 ~s~~~g~~~l~~~d~~~g~--------~~~~~~l~~~~~-----~~~~~~~SpDG~~l~~~~~~~-~~-----~~~~~~i 588 (721)
.... +.+|.+||++++. ...+..+.-+.. .......+|||++|+...... +. +.....-
T Consensus 347 t~~l--dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ 424 (595)
T 1fwx_A 347 SLFL--DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND 424 (595)
T ss_dssp EETT--TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred EEec--CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcc
Confidence 6554 5678889987621 112444443311 012346689999998776542 10 0112233
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~ 620 (721)
.++|+.+++.+.+-........+...+.|..+
T Consensus 425 ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 425 QLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp EEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred eEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence 77888888877665432334455666666554
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.99 E-value=8.4e-08 Score=101.81 Aligned_cols=204 Identities=12% Similarity=0.061 Sum_probs=132.2
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
..++|+++|+ |+++. ...|+++|++++....+. . .... ++|+|+++.|+++.. .+...|+.++..+.
T Consensus 134 ~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 134 WGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMKASG 204 (409)
T ss_dssp EEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEGGGT
T ss_pred eEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEcCCC
Confidence 3578999986 66663 578999999988877665 2 2233 999999999888752 22237777777653
Q ss_pred CCccceEEc----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cC-CCcCc-e-eeEEccCC
Q 004971 498 DGVSAVRRL----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TE-GPWSD-T-MCNWSPDG 569 (721)
Q Consensus 498 ~~~~~~~~l----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~-~~~~~-~-~~~~SpDG 569 (721)
.....+ .........++++|++..|++... ...|+++|.+++.......+ .. ..... . .++|+|++
T Consensus 205 ---~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 205 ---WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp ---TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred ---ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 122333 213345677899997777887432 56899999998763111111 11 11222 3 89999987
Q ss_pred CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-C------------CCCcCCeEECCCCCEEEEEEe-cCCCcCCC
Q 004971 570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-S------------AGRANHPYFSPDGKSIVFTSD-YGGISAEP 635 (721)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~------------~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~ 635 (721)
..|+++.... ..|++++.++. ...+.... . -.....++++|||+ |+++.. ...
T Consensus 279 g~lyv~d~~~------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~----- 345 (409)
T 3hrp_A 279 SNFYMSDQNL------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGY----- 345 (409)
T ss_dssp TEEEEEETTT------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTC-----
T ss_pred CEEEEEeCCC------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCC-----
Confidence 8888877543 38999998765 33332210 0 12245689999999 666554 332
Q ss_pred CCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
.|+++++.++....+...
T Consensus 346 -----------~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 346 -----------CLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp -----------EEEEEETTTTEEEEEEEC
T ss_pred -----------EEEEEECCCCEEEEEeCC
Confidence 499999777777766653
No 219
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.97 E-value=1.1e-07 Score=97.92 Aligned_cols=200 Identities=9% Similarity=0.101 Sum_probs=121.9
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCC--ceEEEee-----------cCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGS--NRRQVYF-----------KNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g--~~~~l~~-----------~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
..++++|+|+ |+++. ...|++++.++. ....+.. ..+..++++|++..|+++.. ...
T Consensus 94 ~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-------~~~ 165 (329)
T 3fvz_A 94 HGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-------YCN 165 (329)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-------SSC
T ss_pred eEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-------CCC
Confidence 3478999998 55553 678999998876 3444421 14567999995555655531 123
Q ss_pred EEEEEEEccCCCCccceEEcccCC----------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNG----------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE- 555 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~- 555 (721)
..|+.++.++. ....+.... .....++++||+..|+++... ...|.+|+.++|+. +..+..
T Consensus 166 ~~I~~~~~~g~----~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~--~~~~~~~ 237 (329)
T 3fvz_A 166 SRIVQFSPSGK----FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEF--VREIKHA 237 (329)
T ss_dssp CEEEEECTTSC----EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCE--EEEECCT
T ss_pred CeEEEEcCCCC----EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcE--EEEEecc
Confidence 34455555443 333333211 235678999997777777643 56899999997774 444432
Q ss_pred -CCcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971 556 -GPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGI 631 (721)
Q Consensus 556 -~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~ 631 (721)
.......++|+| | .++.......- ......|++|+..+++....... .+......++++||| .|+++....+
T Consensus 238 ~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~- 313 (329)
T 3fvz_A 238 SFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN- 313 (329)
T ss_dssp TTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC-
T ss_pred ccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC-
Confidence 223456788999 3 33333221100 11334799999988876665421 133446778999999 6666655443
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 632 SAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
.|++|++++.
T Consensus 314 ---------------~I~~~~~~~~ 323 (329)
T 3fvz_A 314 ---------------TVWKFTLTEK 323 (329)
T ss_dssp ---------------CEEEEEEEEC
T ss_pred ---------------EEEEEeCCcc
Confidence 4999998764
No 220
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.97 E-value=4.4e-08 Score=99.83 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=124.0
Q ss_pred CCceeCcC-CCEEEEEe-CCcEEEEECCCCceEEE-ee-------cCceeeEEcCCCCeEEEEecCCC-------CCCCC
Q 004971 422 SFPSFSPK-GDRIAFVE-FPGVYVVNSDGSNRRQV-YF-------KNAFSTVWDPVREAVVYTSGGPE-------FASES 484 (721)
Q Consensus 422 ~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~~~~l-~~-------~~~~~~~~spdg~~la~~~~~~~-------~~~~~ 484 (721)
..+++++| |+ |+++. ...|++++.+ ++...+ .. ..+..++++++|+.+ ++..... .....
T Consensus 74 ~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 74 AGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSS
T ss_pred ceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccC
Confidence 45688999 64 55543 5589999998 776665 31 236789999999644 4432100 00111
Q ss_pred CcEEEEEEEccCCCCccceEEcccCCCCCcceEEc----cCCCEEEEEEeeCCceeEEEEECC-CCccc---ceEECcCC
Q 004971 485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS----PDGKWIVFRSTRTGYKNLYIMDAE-GGEGY---GLHRLTEG 556 (721)
Q Consensus 485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S----pDg~~l~~~s~~~g~~~l~~~d~~-~g~~~---~~~~l~~~ 556 (721)
....||.++.++ ....+.........++|+ |||+.|++.... ...|++|+.+ +++.. ....+...
T Consensus 151 ~~~~l~~~~~~g-----~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 151 KFGSIYCFTTDG-----QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp SCEEEEEECTTS-----CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCCeEEEECCCC-----CEEEeccCCCCcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCC
Confidence 236788887653 333333322345668999 999988877642 4679999876 44321 12223322
Q ss_pred C-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971 557 P-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635 (721)
Q Consensus 557 ~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 635 (721)
. .....+++++||+.++...... .|++||.++++....... +...+..++|+|||++|++.....+
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~-------~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~----- 290 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSS-------HIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENN----- 290 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTT-------EEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTT-----
T ss_pred CCCCCCceEECCCCCEEEEEcCCC-------EEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCC-----
Confidence 2 3356789999997444433332 799999985554333322 3355678899999998887765543
Q ss_pred CCCCCCCCCCccEEEEEcCC
Q 004971 636 ISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 636 ~~~~~~~~~~~~l~~~d~~~ 655 (721)
.|++++++.
T Consensus 291 -----------~l~~~~~~~ 299 (314)
T 1pjx_A 291 -----------AVWKFEWQR 299 (314)
T ss_dssp -----------EEEEEECSS
T ss_pred -----------eEEEEeCCC
Confidence 499998764
No 221
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.96 E-value=3.6e-08 Score=105.59 Aligned_cols=158 Identities=8% Similarity=-0.032 Sum_probs=107.4
Q ss_pred CCCceeCcCCCEEEE---E--eCCcEEEEECCCC-----ce----EEEe-----ecCceeeEEcCC-CCeEEEEecCCCC
Q 004971 421 GSFPSFSPKGDRIAF---V--EFPGVYVVNSDGS-----NR----RQVY-----FKNAFSTVWDPV-REAVVYTSGGPEF 480 (721)
Q Consensus 421 ~~~~~~SpDG~~la~---~--~~~~l~v~d~~~g-----~~----~~l~-----~~~~~~~~~spd-g~~la~~~~~~~~ 480 (721)
...++|+|||++|++ . .++.|.+||+.++ +. ..+. ...+..++|+|+ +..|+.++
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s----- 169 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL----- 169 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-----
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-----
Confidence 456799999999986 3 2678999998654 11 1121 456889999998 67777765
Q ss_pred CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----
Q 004971 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---- 556 (721)
Q Consensus 481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---- 556 (721)
.++.+.||++.... .......+...+..++|+|||++|+..+. +..|++||.. ++. ...+..+
T Consensus 170 --~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~---dg~v~iwd~~-~~~--~~~~~~~~~~~ 236 (434)
T 2oit_A 170 --ADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQ---NGTVVQYLPT-LQE--KKVIPCPPFYE 236 (434)
T ss_dssp --TTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEET---TSCEEEECTT-CCE--EEEECCCTTCC
T ss_pred --CCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcC---CCcEEEEccC-Ccc--cccccCCcccC
Confidence 57899999986532 22223334456788999999999999886 7789999998 442 2223221
Q ss_pred ---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 557 ---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 557 ---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
...+..+.|++++.+++......+.......+++|++...
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 1256789999998877665543211112346888998654
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=4e-07 Score=94.66 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=131.8
Q ss_pred eee--cCCCCEEEEEEecCCCCeeeEEEEECCCC----ceEEeec---cc-C-CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971 326 ATS--PGNNKFIAVATRRPTSSYRHIELFDLVKN----KFIELTR---FV-S-PKTHHLNPFISPDSSRVGYHKCRGGST 394 (721)
Q Consensus 326 ~~s--p~dG~~la~~~~~~g~~~~~l~l~dl~tg----~~~~l~~---~~-~-~~~~~~~~~~Spdg~~l~~~~~~~~~~ 394 (721)
.++ + ++++|+..... ..+|+++|+++. +...... .. . .......+..+||| |+.....+. .
T Consensus 88 ~~~~~~-~r~~l~v~~l~----s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~-~ 159 (462)
T 2ece_A 88 NGKPNI-ERRFLIVPGLR----SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE-E 159 (462)
T ss_dssp TCCTTC-CSCEEEEEBTT----TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET-T
T ss_pred ccCCCc-cCCEEEEccCC----CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc-C
Confidence 446 7 89988774332 345999999765 2222221 00 0 01123345788999 444333221 1
Q ss_pred CCCCcceeEEEeccCCCC--cceecccC---CCCceeCcCCCEEEEEe--------------------CCcEEEEECCCC
Q 004971 395 REDGNNQLLLENIKSPLP--DISLFRFD---GSFPSFSPKGDRIAFVE--------------------FPGVYVVNSDGS 449 (721)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~--~~~~~~~~---~~~~~~SpDG~~la~~~--------------------~~~l~v~d~~~g 449 (721)
+ .+...+.+.+..+... .+...... ...+.|+|+++.++... ...|.+||++++
T Consensus 160 g-~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 160 G-EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp S-CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred C-CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 1 1124577777664421 11101011 12357799999766663 578999999987
Q ss_pred ceE-EEeec----CceeeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccC-----------
Q 004971 450 NRR-QVYFK----NAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTN----------- 509 (721)
Q Consensus 450 ~~~-~l~~~----~~~~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~----------- 509 (721)
+.. .+..+ ....+. ++|||+++++++.- ..+...+++.+|..+. +. ....+.+ ...
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~-~~~~Lss~V~v~~~d~-g~--~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV-SLKDLSSSIWLWFYED-GK--WNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE-ETTTCCEEEEEEEEET-TE--EEEEEEEEECCEECCSSCCGGGG
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEee-eccCCCceEEEEEecC-Cc--eeEEEEEeCCCcccccccccccc
Confidence 643 33322 333444 49999999988720 0001345666666553 11 1111111 110
Q ss_pred -----CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECcCC-C-------------cCceeeEEccCC
Q 004971 510 -----GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLTEG-P-------------WSDTMCNWSPDG 569 (721)
Q Consensus 510 -----~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~~~-~-------------~~~~~~~~SpDG 569 (721)
......+.+|||||+|+++... ...|.++|+. .++.+.+..+..+ . .....+.+||||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG 392 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG 392 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence 1245678999999999877653 4578888875 3333334444432 1 124678999999
Q ss_pred CEEEEEE
Q 004971 570 EWIAFAS 576 (721)
Q Consensus 570 ~~l~~~~ 576 (721)
++|+++.
T Consensus 393 k~LyVaN 399 (462)
T 2ece_A 393 RRVYVTN 399 (462)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9999988
No 223
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.95 E-value=1.4e-07 Score=93.87 Aligned_cols=234 Identities=9% Similarity=0.025 Sum_probs=137.5
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc--cCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGDRIAFVE-FPGVYVVNSD 447 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~la~~~-~~~l~v~d~~ 447 (721)
....++++++|+ |+++..... ..++..+..+......... .....++++++|+ |++.. .+.|++++.+
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMY-------GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSS-------CEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTT
T ss_pred CccceEECCCCC-EEEEccCCC-------CcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCC
Confidence 344678889887 544132222 3455555433321111111 2345678999998 55554 6789999998
Q ss_pred CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCC
Q 004971 448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGK 523 (721)
Q Consensus 448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~ 523 (721)
++....+. ...+..++++++|+ |+++.. ..+ .|+.++..+. ......... .....++++|+|+
T Consensus 96 ~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~------~~~--~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 96 SNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR------GNN--RVVKLAAGSK----TQTVLPFTGLNDPDGVAVDNSGN 162 (270)
T ss_dssp CSCCEECCCCSCSSEEEEEECTTCC-EEEEEG------GGT--EEEEECTTCC----SCEECCCCSCCSCCCEEECTTCC
T ss_pred CceEeeeecCCcCCCcceEECCCCC-EEEEEC------CCC--EEEEEECCCc----eeEeeccccCCCceeEEEeCCCC
Confidence 87665554 14567889999997 555431 123 3444444332 222222222 3567789999998
Q ss_pred EEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
|++.... ...|+++|.+++. ..... ........++++++| .|+++.... ..|++++.++.......
T Consensus 163 -l~v~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~------~~v~~~~~~~~~~~~~~ 229 (270)
T 1rwi_B 163 -VYVTDTD--NNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAG-TVYVTEHNT------NQVVKLLAGSTTSTVLP 229 (270)
T ss_dssp -EEEEEGG--GTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTC-CEEEEETTT------SCEEEECTTCSCCEECC
T ss_pred -EEEEECC--CCEEEEEecCCCc---eEeecccCCCCceEEEECCCC-CEEEEECCC------CcEEEEcCCCCcceeec
Confidence 5555432 4589999998766 33332 222345788999999 466655432 27999999876554432
Q ss_pred ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.. .......+++++||+ |+++....+ .|+++++...+
T Consensus 230 ~~-~~~~p~~i~~~~~g~-l~v~~~~~~----------------~v~~~~~~~~~ 266 (270)
T 1rwi_B 230 FT-GLNTPLAVAVDSDRT-VYVADRGND----------------RVVKLTSLEHH 266 (270)
T ss_dssp CC-SCSCEEEEEECTTCC-EEEEEGGGT----------------EEEEECCCGGG
T ss_pred cC-CCCCceeEEECCCCC-EEEEECCCC----------------EEEEEcCCCcc
Confidence 21 223467789999997 655555443 48888876543
No 224
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.93 E-value=2.4e-07 Score=94.35 Aligned_cols=246 Identities=11% Similarity=0.021 Sum_probs=141.6
Q ss_pred cccCceeecCCCCEEEEEEe---cCCCCeeeEEEEECCCCceEEeecc--cCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATR---RPTSSYRHIELFDLVKNKFIELTRF--VSPKTHHLNPFISPDSSRVGYHKCRGGSTR 395 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~---~~g~~~~~l~l~dl~tg~~~~l~~~--~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~ 395 (721)
....++|++ +|+ |++... ..+.....|++||+.+++...+... ......+..+++++++..|+++...
T Consensus 19 ~~~~~~~~~-~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 19 GAEGPVFDK-NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp TCEEEEECT-TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred CccCceECC-CCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 446788999 996 554410 0011234599999988876554320 0012345678899994455554432
Q ss_pred CCCcceeEEEeccCCCCcc-eec-----ccCCCCceeCcCCCEEEEEeC----------------CcEEEEECCCCceEE
Q 004971 396 EDGNNQLLLENIKSPLPDI-SLF-----RFDGSFPSFSPKGDRIAFVEF----------------PGVYVVNSDGSNRRQ 453 (721)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~-~~~-----~~~~~~~~~SpDG~~la~~~~----------------~~l~v~d~~~g~~~~ 453 (721)
..++..+..+....+ ... ......++++++|+.++.... ..|+.++.+ ++...
T Consensus 92 ----~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 92 ----LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ----TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ----CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 235556554211111 000 012345788999964443322 478999887 55544
Q ss_pred Ee--ecCceeeEEc----CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEcccCC-CCCcceEEccCCCEE
Q 004971 454 VY--FKNAFSTVWD----PVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTTNG-KNNAFPSVSPDGKWI 525 (721)
Q Consensus 454 l~--~~~~~~~~~s----pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~~SpDg~~l 525 (721)
+. ......++|+ |||+.|+++.. ..+.+.+|+++..+.... .....+.... .....+++++||+.+
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEEC------CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 43 3455678999 99998888752 345666776652221000 0111122221 345668899999754
Q ss_pred EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
+.... ...|++||.++++. ...+......+..++|+|||+.|+++.... ..|++++++.
T Consensus 241 v~~~~---~~~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~~ 299 (314)
T 1pjx_A 241 VANWG---SSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHEN------NAVWKFEWQR 299 (314)
T ss_dssp EEEET---TTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTT------TEEEEEECSS
T ss_pred EEEcC---CCEEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCEEEEEeCCC------CeEEEEeCCC
Confidence 43333 45899999986663 333333334457889999999888877642 2799998865
No 225
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.88 E-value=7.2e-07 Score=89.84 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=151.7
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
.+..+++++ +|+ +++.... ...|.++|.. ++...... .........++++++|+ +++... .. .
T Consensus 16 ~~~~i~~d~-~g~-l~v~~~~----~~~v~~~d~~-~~~~~~~~-~~~~~~~~~i~~~~~g~-l~v~~~-~~-------~ 78 (299)
T 2z2n_A 16 GPYGITVSD-KGK-VWITQHK----ANMISCINLD-GKITEYPL-PTPDAKVMCLTISSDGE-VWFTEN-AA-------N 78 (299)
T ss_dssp CEEEEEECT-TSC-EEEEETT----TTEEEEECTT-CCEEEEEC-SSTTCCEEEEEECTTSC-EEEEET-TT-------T
T ss_pred CccceEECC-CCC-EEEEecC----CCcEEEEcCC-CCeEEecC-CcccCceeeEEECCCCC-EEEeCC-CC-------C
Confidence 456788889 987 4443321 2349999988 66544331 11234466788999987 444332 22 2
Q ss_pred eeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971 401 QLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~ 473 (721)
.++..+..+....+.. .......++++++|+.++.. ....|++++. +++...+. ...+..+.++++|+ +++
T Consensus 79 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v 156 (299)
T 2z2n_A 79 KIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF 156 (299)
T ss_dssp EEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE
T ss_pred eEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE
Confidence 3555554322111110 01122346788888643333 2568999998 55554443 23466788999985 444
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
+.. ....|+.++..+ ....+ .........++++++|+ |++.... ...|+++|. +++... .
T Consensus 157 ~~~--------~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~-~g~~~~-~ 218 (299)
T 2z2n_A 157 TEN--------QNNAIGRITESG-----DITEFKIPTPASGPVGITKGNDDA-LWFVEII--GNKIGRITT-SGEITE-F 218 (299)
T ss_dssp EET--------TTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEE-E
T ss_pred EeC--------CCCEEEEEcCCC-----cEEEeeCCCCCCcceeEEECCCCC-EEEEccC--CceEEEECC-CCcEEE-E
Confidence 431 223455555532 33332 22223456788999988 4444421 457999999 666311 1
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 631 (721)
.+.........++++++|+ |+++.... ..|+++|.+ ++...+........+..+++ ++|+. ++....+
T Consensus 219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~------~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l-~v~~~~~-- 286 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGID-LWFTEWGA------NKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETI-WFAMECD-- 286 (299)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETTT------TEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCE-EEEETTT--
T ss_pred ECCCCCCCceeEEECCCCC-EEEeccCC------ceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCE-EEEecCC--
Confidence 1222234457889999998 55555321 279999984 55444432212344567788 88774 4443322
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 632 SAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
.|+++++++++
T Consensus 287 ---------------~l~~~~~~~~~ 297 (299)
T 2z2n_A 287 ---------------KIGKLTLIKDN 297 (299)
T ss_dssp ---------------EEEEEEEC---
T ss_pred ---------------cEEEEEcCccc
Confidence 38888877654
No 226
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.87 E-value=3.5e-07 Score=91.83 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=105.2
Q ss_pred Ccee-CcCCCEEEEEe---CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 423 FPSF-SPKGDRIAFVE---FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 423 ~~~~-SpDG~~la~~~---~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
.+++ .++| .|+++. ...|++++.++.....+. ...+..++++|+|+ ++++.. .++. |+.++.+
T Consensus 81 ~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~--i~~~~~~ 150 (286)
T 1q7f_A 81 RVAVVRNSG-DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------KVMR--VIIFDQN 150 (286)
T ss_dssp EEEEETTTT-EEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET------TTTE--EEEECTT
T ss_pred EEEEEcCCC-eEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEEC------CCCE--EEEEcCC
Confidence 3567 4666 455553 678999996554444443 23567889999997 555431 2334 4444444
Q ss_pred CCCCccceEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCE
Q 004971 496 DVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEW 571 (721)
Q Consensus 496 ~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~ 571 (721)
+. ....+.. .......++++|||+ |+++... ...|++||.++.. +..+... ......++++|||+
T Consensus 151 g~----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~- 219 (286)
T 1q7f_A 151 GN----VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR--AHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGE- 219 (286)
T ss_dssp SC----EEEEEECTTTCSSEEEEEECSSSE-EEEEEGG--GTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCC-
T ss_pred CC----EEEEeCCCCccCCcEEEEECCCCC-EEEEECC--CCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCC-
Confidence 42 3344432 223466789999998 5554432 5689999986543 4444332 13457899999997
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~ 626 (721)
|+++.... ...|++|+.++.....+...........++++|||+ |++++
T Consensus 220 l~v~~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~ 268 (286)
T 1q7f_A 220 ILIADNHN-----NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLAS 268 (286)
T ss_dssp EEEEECSS-----SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEE
T ss_pred EEEEeCCC-----CEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEEC
Confidence 44444321 127999997665554444321222345789999997 44444
No 227
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.86 E-value=1.5e-07 Score=96.77 Aligned_cols=241 Identities=12% Similarity=0.052 Sum_probs=139.4
Q ss_pred cccCceeecCCCCEEEEEEecCCC--------------------CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTS--------------------SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~--------------------~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd 380 (721)
.+..++++| +|+.++. ...... ....|++||.++++...... .........++++|+
T Consensus 25 ~v~~va~d~-~G~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 25 QVSGVALDS-KNNLVIF-HRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CEEEEEECT-TCCEEEE-ECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred CceEEEECC-CCCEEEE-eCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 356788999 9975543 222110 11359999999887543221 112234567899999
Q ss_pred CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc------------cCCCCceeCc-CCCEEEEEe--CCcEEEEE
Q 004971 381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR------------FDGSFPSFSP-KGDRIAFVE--FPGVYVVN 445 (721)
Q Consensus 381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~Sp-DG~~la~~~--~~~l~v~d 445 (721)
|+ |+++. ... ..++..+..+....+.... .....++++| +|+.++... ...|++++
T Consensus 102 g~-l~v~d-~~~-------~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 102 GN-YWVTD-VAL-------HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp SC-EEEEE-TTT-------TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred CC-EEEEE-CCC-------CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 98 54433 332 3466666554421222111 0123478999 665444432 57899999
Q ss_pred CCCCceEEEe-ec-----------CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCC
Q 004971 446 SDGSNRRQVY-FK-----------NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGK 511 (721)
Q Consensus 446 ~~~g~~~~l~-~~-----------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~ 511 (721)
.++.....+. .+ .+..++++|++..|+++.. .+..+.+|+.+. +. ....+.. ...
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~------~~~~I~~~~~~~-G~----~~~~~~~~~~~~ 241 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR------ENGRIQCFKTDT-KE----FVREIKHASFGR 241 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET------TTTEEEEEETTT-CC----EEEEECCTTTTT
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC------CCCEEEEEECCC-Cc----EEEEEeccccCC
Confidence 6655444443 11 2667999999778887752 345555555431 32 3444432 223
Q ss_pred CCcceEEccCCCEEEEEEee-----CCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971 512 NNAFPSVSPDGKWIVFRSTR-----TGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGS 583 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~-----~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 583 (721)
....++|+| | .++..... .....+++|+..+++. +..+. ........++++||| .|+++....
T Consensus 242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~---- 312 (329)
T 3fvz_A 242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT---- 312 (329)
T ss_dssp CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTS-EEEEEESSS----
T ss_pred CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCC-CEEEEECCC----
Confidence 456678999 3 33333221 1245899999988874 44432 223345789999999 676666543
Q ss_pred CceeEEEEecCC
Q 004971 584 GSFEMYLIHPNG 595 (721)
Q Consensus 584 ~~~~i~~~d~~~ 595 (721)
..|++|++++
T Consensus 313 --~~I~~~~~~~ 322 (329)
T 3fvz_A 313 --NTVWKFTLTE 322 (329)
T ss_dssp --CCEEEEEEEE
T ss_pred --CEEEEEeCCc
Confidence 3799988765
No 228
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=8e-07 Score=93.41 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=138.0
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..++|++.+..|+++. ...|+.++++++..+.+. ......+++.+.+..|+++.. ..-.|+.++.++
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~--------~~~~I~~~~~dg 190 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDG 190 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET--------TTTEEEECBTTS
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC--------CCCeEEEEeCCC
Confidence 3478888888888884 678999999988766654 234567899999999998853 223566666665
Q ss_pred CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~ 574 (721)
. ..+.+.... .....+++.|++.+|+++.... ...|++++.++.. ...+. ........++|+|+++.|++
T Consensus 191 ~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 191 A----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp C----SCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred C----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 4 333333322 4567789999999999886532 3689999998655 33332 23333578999999999999
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-c
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-L 653 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~ 653 (721)
+.... ..|+++++++...+.+... .......+++ ++..|+++....+ .|++++ .
T Consensus 263 aD~~~------~~I~~~d~dG~~~~~~~~~-~~~~P~giav--~~~~ly~td~~~~----------------~V~~~~~~ 317 (386)
T 3v65_B 263 VDAKH------HVIERANLDGSHRKAVISQ-GLPHPFAITV--FEDSLYWTDWHTK----------------SINSANKF 317 (386)
T ss_dssp EETTT------TEEEEECTTSCSCEEEECS-SCSSEEEEEE--ETTEEEEEETTTT----------------EEEEEETT
T ss_pred EECCC------CEEEEEeCCCCeeEEEEEC-CCCCceEEEE--ECCEEEEeeCCCC----------------eEEEEECC
Confidence 98653 3899999988766655532 2233455666 4567888765443 499999 4
Q ss_pred CCCCeEEecc
Q 004971 654 DGSDLKRLTQ 663 (721)
Q Consensus 654 ~~~~~~~lt~ 663 (721)
+|+..+.|..
T Consensus 318 ~G~~~~~i~~ 327 (386)
T 3v65_B 318 TGKNQEIIRN 327 (386)
T ss_dssp TCCSCEEEEC
T ss_pred CCcceEEEcc
Confidence 5555666654
No 229
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.83 E-value=8.5e-07 Score=90.47 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=132.2
Q ss_pred EEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-c
Q 004971 432 RIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-T 508 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~ 508 (721)
.|+|.....|..+++++++...+. ...+..++|++++..|+++.. ..-.|+.++.++.........+. .
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~--------~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECS
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC--------CCCcEEEEECCCCCCCcccEEEEeC
Confidence 577777889999999988765554 345678999999999999852 23355666554410000222222 2
Q ss_pred CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
.......+++.+.++.|++.... ...|.++++++.. .+.+.. .......++++|++..|+++.... ...
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~~g~~---~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~ 144 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAK 144 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCE
T ss_pred CCCCcCEEEEeecCCeEEEEECC--CCEEEEEeCCCCc---eEEEEECCCCCcceEEeCCCCCEEEEEccCC-----CCe
Confidence 22456778999888889888653 5689999998655 333322 223457889999989998887531 238
Q ss_pred EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
|+++++++...+.+... .-.....++++|+++.||++..... .|+++|++|+..+.+..
T Consensus 145 I~~~~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~----------------~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE 203 (316)
T ss_dssp EEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEE
T ss_pred EEEEcCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCC----------------eEEEEecCCCceEEEee
Confidence 99999987665555432 2344568899999999999876543 49999998876665543
No 230
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.83 E-value=1.4e-06 Score=90.27 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=138.8
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..++|++.+..|+++. ...|+.++++++..+.+. ......+++.+.+..|+++.. ..-.|+.++.++
T Consensus 76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG 147 (349)
T 3v64_C 76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDG 147 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTS
T ss_pred EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC--------CCCeEEEEcCCC
Confidence 3468888888898884 678999999988766654 234567899998999998853 233666677766
Q ss_pred CCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~ 574 (721)
. ..+.+.. .......+++.|++.+|+++.... ...|++++.++.. ...+.. .......++++|+++.|++
T Consensus 148 ~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 148 A----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp C----SCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred C----ceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEE
Confidence 4 3344433 224567789999999999887532 3789999998655 344432 3334578999999999999
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-c
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-L 653 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~ 653 (721)
+.... ..|+++++++...+.+... .......+++ ++..|+++....+ .|+.++ .
T Consensus 220 aD~~~------~~I~~~~~dG~~~~~~~~~-~~~~P~giav--~~~~ly~td~~~~----------------~V~~~~~~ 274 (349)
T 3v64_C 220 VDAKH------HVIERANLDGSHRKAVISQ-GLPHPFAITV--FEDSLYWTDWHTK----------------SINSANKF 274 (349)
T ss_dssp EETTT------TEEEEEETTSCSCEEEECS-SCSSEEEEEE--ETTEEEEEETTTT----------------EEEEEETT
T ss_pred EECCC------CEEEEEeCCCCceEEEEeC-CCCCceEEEE--ECCEEEEecCCCC----------------eEEEEEcc
Confidence 98653 3899999988766655432 2234455666 4567887765543 499998 4
Q ss_pred CCCCeEEecc
Q 004971 654 DGSDLKRLTQ 663 (721)
Q Consensus 654 ~~~~~~~lt~ 663 (721)
+|+..+.|..
T Consensus 275 ~G~~~~~i~~ 284 (349)
T 3v64_C 275 TGKNQEIIRN 284 (349)
T ss_dssp TCCSCEEEEC
T ss_pred CCCccEEecc
Confidence 5555666654
No 231
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=4.1e-06 Score=85.35 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=139.2
Q ss_pred EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecc---cCCC
Q 004971 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFR---FDGS 422 (721)
Q Consensus 349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~---~~~~ 422 (721)
|+.+|+++++...+.. .......++|+++++.|+++.... ..|+..++.+. ........ ....
T Consensus 12 I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~--------~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCC--------CcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 8999999876544432 134456789999999998865433 35676666541 11111111 1234
Q ss_pred CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
.+++.+.+..|+++. ...|.++++++...+.+.. .....+++.|++.+|+++.. .....|+.++.++.
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~-------~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNGV 153 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-------SSSCEEEEEETTSC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc-------CCCCeEEEEcCCCC
Confidence 567877777888873 6789999998876665542 35678899999999998752 12357888887764
Q ss_pred CCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971 498 DGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 498 ~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~ 576 (721)
..+.+... -.....++++|++++|+++... ...|+++|.++...+.+............+++ |+..|+++.
T Consensus 154 ----~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav--~~~~ly~~d 225 (316)
T 1ijq_A 154 ----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTD 225 (316)
T ss_dssp ----CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred ----CeEEEEECCCCCceEEEEeccCCEEEEEECC--CCeEEEEecCCCceEEEeecCCccCCcEEEEE--ECCEEEEEE
Confidence 44444332 2456678999999999998753 56899999986553222221111122345666 456788877
Q ss_pred ccCCCCCCceeEEEEecCCCce
Q 004971 577 DRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
... ..|++++..+|+.
T Consensus 226 ~~~------~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 226 IIN------EAIFSANRLTGSD 241 (316)
T ss_dssp TTT------TEEEEEETTTCCC
T ss_pred CCC------CeEEEEeCCCCcc
Confidence 543 3799999766553
No 232
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.81 E-value=4e-07 Score=91.42 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=125.4
Q ss_pred CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEee--------cCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF--------KNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~--------~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
..++++++|+.++.. ....|.+|+.++.....+.. ..+..++++ ++| .|+++.. .....|+.
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~-------~~~~~i~~ 104 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTER-------SPTHQIQI 104 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEEC-------GGGCEEEE
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcC-------CCCCEEEE
Confidence 346889999744333 36789999988554444431 245577885 555 5555541 11234555
Q ss_pred EEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccC
Q 004971 492 INVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPD 568 (721)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpD 568 (721)
++.++. ....+.... .....++++|||+ |++.... ...|++||.++.. +..+. ........++++||
T Consensus 105 ~d~~g~----~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~g~~---~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 105 YNQYGQ----FVRKFGATILQHPRGVTVDNKGR-IIVVECK--VMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp ECTTSC----EEEEECTTTCSCEEEEEECTTSC-EEEEETT--TTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSS
T ss_pred ECCCCc----EEEEecCccCCCceEEEEeCCCC-EEEEECC--CCEEEEEcCCCCE---EEEeCCCCccCCcEEEEECCC
Confidence 554442 344443322 3456789999998 5444421 4689999976433 33332 22234578999999
Q ss_pred CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
|+ |+++.... ..|++||.++.....+...+.......+++++||+.++ +....+ ..|
T Consensus 175 g~-l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v-~~~~~~---------------~~i 231 (286)
T 1q7f_A 175 QE-IFISDNRA------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILI-ADNHNN---------------FNL 231 (286)
T ss_dssp SE-EEEEEGGG------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEE-EECSSS---------------CEE
T ss_pred CC-EEEEECCC------CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEE-EeCCCC---------------EEE
Confidence 97 55554321 28999998665444443211123456789999997443 443321 139
Q ss_pred EEEEcCCCCeEEeccCCCC--CCCceecCC
Q 004971 649 FKIKLDGSDLKRLTQNSFE--DGTPAWGPR 676 (721)
Q Consensus 649 ~~~d~~~~~~~~lt~~~~~--~~~~~~sp~ 676 (721)
++||.++...+.+..+... ....+++|+
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 232 TIFTQDGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEECCCCCEEEEEcccCCCCcceeEEECCC
Confidence 9999887766666653322 234667775
No 233
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.81 E-value=4.3e-07 Score=95.51 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=138.7
Q ss_pred CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
.+|++.....|+.++++++....+. ...+..++|.+.+..|+++.. ..-.|++++.++. ..+.+..
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~--------~~~~I~r~~~~g~----~~~~~~~ 155 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV--------TLDRILRANLNGS----NVEEVVS 155 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----CEEEEEC
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC--------CCCcEEEEecCCC----CcEEEEe
Confidence 4677777788999999988766655 345678999999999998752 2346778887764 4444433
Q ss_pred -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
.......+++.+.+..|++.... ...|+++++++.. .+.+. ........++++|++..|+++.... ..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~td~~~-----~~ 225 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-----TP 225 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEEeccCC-----CC
Confidence 22456778999999999988753 4589999998655 23332 2323457889999999999887542 24
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.|+++++++...+.+... .-.....++|+|+++.||++..... .|++++++++..+.+..
T Consensus 226 ~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 226 RIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHH----------------VIERANLDGSHRKAVIS 285 (386)
T ss_dssp EEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTT----------------EEEEECTTSCSCEEEEC
T ss_pred EEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCC----------------EEEEEeCCCCeeEEEEE
Confidence 899999988766665432 2234578999999999999876543 49999998876665543
No 234
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.81 E-value=7e-07 Score=92.42 Aligned_cols=193 Identities=14% Similarity=0.116 Sum_probs=137.4
Q ss_pred CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
..|+|.....|+.+++++.....+. ...+..++|++....|+++.. ..-.|++++.++. ..+.+..
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~--------~~~~I~r~~~~g~----~~~~~~~ 112 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV--------TLDRILRANLNGS----NVEEVVS 112 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEEEC
T ss_pred ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec--------cCCceEEEecCCC----CceEEEe
Confidence 3677777788999999887766554 345678899999999998752 2346777777764 3344333
Q ss_pred -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
.......+++.+.+..|++.... ...|+++++++.. .+.+. ........++++|++..|+++.... ..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-----~~ 182 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-----TP 182 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECTTCSCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred CCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCc---eEEEEeCCCCCcceEEEecCcCeEEEeccCC-----CC
Confidence 22456778999989999988753 4589999998665 23332 2323457889999999999887642 24
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
.|+++++++...+.+... .-.....++++|+++.||++..... .|++++++|+..+.+.
T Consensus 183 ~I~r~~~dG~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~----------------~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 183 RIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHH----------------VIERANLDGSHRKAVI 241 (349)
T ss_dssp EEEEEETTSCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEE
T ss_pred EEEEEeCCCCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCC----------------EEEEEeCCCCceEEEE
Confidence 899999988766655432 2234577999999999999876543 4999999887666554
No 235
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.77 E-value=3.5e-06 Score=84.78 Aligned_cols=261 Identities=12% Similarity=0.053 Sum_probs=147.6
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
....+.+++ +|+ |++.... ...|.++|.. ++...+.. .........++++++|+ |++... .. .
T Consensus 21 ~p~~i~~d~-~g~-l~v~~~~----~~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~-l~v~~~-~~-------~ 83 (300)
T 2qc5_A 21 GPYGITSSE-DGK-VWFTQHK----ANKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGD-IWFTEN-GA-------N 83 (300)
T ss_dssp CEEEEEECT-TSC-EEEEETT----TTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSC-EEEEET-TT-------T
T ss_pred CcceeeECC-CCC-EEEEcCC----CCeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCC-EEEEec-CC-------C
Confidence 446778888 887 4443322 2348999988 66544321 11223456778888886 444332 22 2
Q ss_pred eeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971 401 QLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 401 ~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~ 473 (721)
.++..+..+....+... ......+++.++|+.++... ...|+.++.+ ++...+. ...+..+.++++|+ |++
T Consensus 84 ~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v 161 (300)
T 2qc5_A 84 KIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF 161 (300)
T ss_dssp EEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE
T ss_pred eEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE
Confidence 35555544221111110 11223467788886433332 5689999988 5554443 23466788999998 555
Q ss_pred EecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~ 551 (721)
+.. ....|+.++..+ ....+.. .......++++++|+ |++.... ...|++++. +++.. ..
T Consensus 162 ~~~--------~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~~-~~ 223 (300)
T 2qc5_A 162 TEN--------QNNSIGRITNTG-----KLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM--GNKIGRITT-TGEIS-EY 223 (300)
T ss_dssp EET--------TTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEE-EE
T ss_pred Eec--------CCCeEEEECCCC-----cEEEeeCCCCCCCcceEEECCCCC-EEEEccC--CCEEEEEcC-CCcEE-EE
Confidence 542 223455665533 3333322 223456788999986 5555431 457999998 45521 11
Q ss_pred ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
.+.........++++++|+ |+++.... ..|++++.+ ++...............++++++|+ |++...
T Consensus 224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~ 290 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSE-IWFTEWGA------NQIGRITND-NTIQEYQLQTENAEPHGITFGKDGS-VWFALK 290 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETTT------TEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSC-EEEECS
T ss_pred ECCCCCCCceEEEECCCCC-EEEeccCC------CeEEEECCC-CcEEEEECCccCCccceeEeCCCCC-EEEEcc
Confidence 1222333456789999998 55555331 279999984 5544443221234577889999998 444443
No 236
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.75 E-value=5.6e-07 Score=89.32 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=126.2
Q ss_pred CCCceeCcCCCEEEE-E--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 421 GSFPSFSPKGDRIAF-V--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 421 ~~~~~~SpDG~~la~-~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
...++++++|+ |++ . ..+.|++++..++....+. ...+..++++++|+ |+++. . .-.|+.++.
T Consensus 26 p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-------~--~~~i~~~d~ 94 (270)
T 1rwi_B 26 PSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTD-------F--NNRVVTLAA 94 (270)
T ss_dssp EEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEE-------T--TTEEEEECT
T ss_pred ccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEc-------C--CCEEEEEeC
Confidence 34468899997 555 4 3578999988766554433 23567899999998 65554 1 224566666
Q ss_pred cCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEE
Q 004971 495 DDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 495 ~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l 572 (721)
++. ....+.... .....++++|+|+ |++.... ...|++++..+.. ..... ........++++|||+ |
T Consensus 95 ~~~----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~-l 163 (270)
T 1rwi_B 95 GSN----NQTVLPFDGLNYPEGLAVDTQGA-VYVADRG--NNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGN-V 163 (270)
T ss_dssp TCS----CCEECCCCSCSSEEEEEECTTCC-EEEEEGG--GTEEEEECTTCCS---CEECCCCSCCSCCCEEECTTCC-E
T ss_pred CCc----eEeeeecCCcCCCcceEECCCCC-EEEEECC--CCEEEEEECCCce---eEeeccccCCCceeEEEeCCCC-E
Confidence 553 333343222 3566789999998 5555432 4579999765544 22222 2222456799999998 5
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
+++.... ..|++++.+++........ .......++++++| .|+++....+ .|++++
T Consensus 164 ~v~~~~~------~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g-~l~v~~~~~~----------------~v~~~~ 219 (270)
T 1rwi_B 164 YVTDTDN------NRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAG-TVYVTEHNTN----------------QVVKLL 219 (270)
T ss_dssp EEEEGGG------TEEEEECTTTCCEEECCCS-SCCSEEEEEECTTC-CEEEEETTTS----------------CEEEEC
T ss_pred EEEECCC------CEEEEEecCCCceEeeccc-CCCCceEEEECCCC-CEEEEECCCC----------------cEEEEc
Confidence 5555432 2799999988765443321 22445678999999 4555554332 499999
Q ss_pred cCCCCeEEeccCC-CCCCCceecCC
Q 004971 653 LDGSDLKRLTQNS-FEDGTPAWGPR 676 (721)
Q Consensus 653 ~~~~~~~~lt~~~-~~~~~~~~sp~ 676 (721)
.++.....+.... ......+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 220 AGSTTSTVLPFTGLNTPLAVAVDSD 244 (270)
T ss_dssp TTCSCCEECCCCSCSCEEEEEECTT
T ss_pred CCCCcceeeccCCCCCceeEEECCC
Confidence 9887655543222 22345667664
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=8.8e-07 Score=86.58 Aligned_cols=191 Identities=13% Similarity=0.015 Sum_probs=124.8
Q ss_pred CceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 423 FPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 423 ~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
.+.|++|| +|+... .+.|.++|+.+++... +. ........+..+|++|+.... .++. ++.++..+
T Consensus 25 Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~--v~viD~~t 95 (266)
T 2iwa_A 25 GLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNI--GFIYDRRT 95 (266)
T ss_dssp EEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSE--EEEEETTT
T ss_pred cEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCE--EEEEECCC
Confidence 47889986 666653 4789999999988543 33 334444456667889888862 3344 44555544
Q ss_pred CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCc---CceeeEEccCCCE
Q 004971 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPW---SDTMCNWSPDGEW 571 (721)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~---~~~~~~~SpDG~~ 571 (721)
. .....+... ......+++||++|+++. +...|+++|.++.+. +..+.- ... ..+.+.|. || .
T Consensus 96 ~---~v~~~i~~g--~~~g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 96 L---SNIKNFTHQ--MKDGWGLATDGKILYGSD---GTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp T---EEEEEEECC--SSSCCEEEECSSSEEEEC---SSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred C---cEEEEEECC--CCCeEEEEECCCEEEEEC---CCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CC-E
Confidence 2 234444433 123456889999988654 267999999998775 444432 211 23567787 76 5
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~ 639 (721)
|+...... ..|.++|+++++........ .......++|+|+|++|+++.....
T Consensus 164 lyvn~~~~------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~--------- 228 (266)
T 2iwa_A 164 VWANIWQT------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP--------- 228 (266)
T ss_dssp EEEEETTS------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS---------
T ss_pred EEEecCCC------CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC---------
Confidence 66555432 38999999999876655421 0023468999999999888776653
Q ss_pred CCCCCCccEEEEEcCCC
Q 004971 640 HQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 640 ~~~~~~~~l~~~d~~~~ 656 (721)
.||.+++...
T Consensus 229 -------~v~~i~l~~~ 238 (266)
T 2iwa_A 229 -------KLFEIKLHLV 238 (266)
T ss_dssp -------EEEEEEEEEC
T ss_pred -------eEEEEEEecc
Confidence 5999987654
No 238
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=2e-06 Score=87.49 Aligned_cols=195 Identities=10% Similarity=0.080 Sum_probs=133.2
Q ss_pred EEEEEeCCcEEEEECCCCc--eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 432 RIAFVEFPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
.|+|.....|..+++++.. ...+. ......++|.+.+..|+++.. ..-.|++++.++.. .....+.
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~--------~~~~I~r~~~~g~~--~~~~~~~ 75 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV--------SEEAIKRTEFNKTE--SVQNVVV 75 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET--------TTTEEEEEETTSSS--CCCEEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC--------CCCcEEEEEccCCC--ceEEEEc
Confidence 5777777889999998874 22222 335668899998889998852 23456777766530 0122233
Q ss_pred cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
..-.....+++.+.+..|++.... ...|.++++++.. .+.+. ........+++.|.+..|+++... ...
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~---~~~l~~~~~~~P~giavdp~~g~ly~td~~-----~~~ 145 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVP 145 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECSSCSSEEEEEEEGGGTEEEEEECS-----SSC
T ss_pred CCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCc---EEEEEeCCCCCccEEEEeCCCCEEEEEecC-----CCC
Confidence 333456678999888889888653 4689999998655 33332 333345788999998889988743 124
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.|+++++++...+.+... .-.....++++|+++.||++..... .|+++|++|+..+.+..
T Consensus 146 ~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~ 205 (318)
T 3sov_A 146 KIERAGMDGSSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLN----------------FIHKSNLDGTNRQAVVK 205 (318)
T ss_dssp EEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred EEEEEEcCCCCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCC----------------EEEEEcCCCCceEEEec
Confidence 899999988766555432 2234577999999999999876543 59999999877666553
No 239
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.70 E-value=3.3e-06 Score=84.20 Aligned_cols=209 Identities=10% Similarity=0.077 Sum_probs=125.7
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
...+.++|||+.++ .....|+.+|.++.....+.. ..+....+.+||+.++..+. ....++.++.++.
T Consensus 39 ~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~--------~~~~v~~vd~~Gk 109 (276)
T 3no2_A 39 CNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCG--------HPSTILEVNMKGE 109 (276)
T ss_dssp CCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEES--------TTEEEEEECTTSC
T ss_pred CcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecC--------CCCEEEEEeCCCC
Confidence 34568899998666 667789999994433444442 24557889999999887651 1456677766553
Q ss_pred CCccceEEcccCC------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971 498 DGVSAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571 (721)
Q Consensus 498 ~~~~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~ 571 (721)
.+..+.... ......++.+||+.|+.... +..|+.+|.+ |+. +..+... .........++|+.
T Consensus 110 ----~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---~~~v~~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~~ 178 (276)
T 3no2_A 110 ----VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---TSEVREIAPN-GQL--LNSVKLS-GTPFSSAFLDNGDC 178 (276)
T ss_dssp ----EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---TTEEEEECTT-SCE--EEEEECS-SCCCEEEECTTSCE
T ss_pred ----EEEEEeccCCCCcccccccCceECCCCCEEEEecC---CCEEEEECCC-CCE--EEEEECC-CCccceeEcCCCCE
Confidence 333333211 12344678999998876544 6789999998 664 4444332 22345777899997
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEE-eeecCCC----CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGSA----GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 646 (721)
|+...... .|+.+|.++|+..- +...... .....+...++|..++.........+. -....
T Consensus 179 ~v~~~~~~-------~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~-------~~~~~ 244 (276)
T 3no2_A 179 LVACGDAH-------CFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAG-------KGKHP 244 (276)
T ss_dssp EEECBTTS-------EEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGG-------GSCCC
T ss_pred EEEeCCCC-------eEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccccc-------ccCCc
Confidence 76655442 79999999776543 3221111 123566778999876654322100000 00013
Q ss_pred cEEEEEcCCCCeEEecc
Q 004971 647 EIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 647 ~l~~~d~~~~~~~~lt~ 663 (721)
+++.++.++.-+.++..
T Consensus 245 ~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 245 QLVEIDSEGKVVWQLND 261 (276)
T ss_dssp SEEEECTTSBEEEEECC
T ss_pred eEEEECCCCCEEEEecC
Confidence 58888776655556554
No 240
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.70 E-value=2.4e-06 Score=90.13 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=135.9
Q ss_pred CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971 431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
.+|++.....|+.+++++.....+. ...+..++|++.+..|+++.. .. -.|+.++.++.........+..
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~------~~--~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQ--RMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET------TT--TEEEEEEC------CCCEEEEC
T ss_pred ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec------CC--CeEEEEEcccCCCCCcceEEEe
Confidence 3677888899999999988766655 456778999999999999852 22 3456665554100002223332
Q ss_pred -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
.......+++.+.++.|++.... ...|+++++++.. ...+. ........++++|.+..|+++.... ..
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-----~~ 225 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PA 225 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred CCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCC-----CC
Confidence 33456678999888889888753 4589999998765 33333 2223357889999988999887542 23
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.|++.++++...+.+... .-.....++++++++.||++..... .|+++|++|+..+.+..
T Consensus 226 ~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE 285 (400)
T ss_dssp CEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCCCEEEEE
T ss_pred EEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCC----------------EEEEEeCCCCccEEEEe
Confidence 799999998776666532 2245678999999999999876543 49999999887766654
No 241
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.65 E-value=9.8e-06 Score=82.41 Aligned_cols=226 Identities=8% Similarity=0.021 Sum_probs=144.4
Q ss_pred EEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971 334 FIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411 (721)
Q Consensus 334 ~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (721)
+|+|+. ...|+.+++++.. ...+... ......+.|.+.++.|+++.... ..|+..++.+..
T Consensus 6 ~ll~~~------~~~I~~i~l~~~~~~~~~~~~~---~~~~~~ld~d~~~~~lyw~D~~~--------~~I~r~~~~g~~ 68 (318)
T 3sov_A 6 LLLYAN------RRDLRLVDATNGKENATIVVGG---LEDAAAVDFVFSHGLIYWSDVSE--------EAIKRTEFNKTE 68 (318)
T ss_dssp EEEEEC------EEEEEEEETTCTTSCCEEEEEE---EEEEEEEEEEGGGTEEEEEETTT--------TEEEEEETTSSS
T ss_pred EEEEEc------cCeEEEEECCCCceEEEEEecC---CCccEEEEEEeCCCEEEEEECCC--------CcEEEEEccCCC
Confidence 566643 2349999998763 2222111 12344678999888998865433 356777665542
Q ss_pred Ccceecc---cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971 412 PDISLFR---FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASE 483 (721)
Q Consensus 412 ~~~~~~~---~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~ 483 (721)
....... .....+++.+.+..|+++. ...|.++++++...+.+. ......+++.|.+.+|+++..
T Consensus 69 ~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~------- 141 (318)
T 3sov_A 69 SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW------- 141 (318)
T ss_dssp CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-------
T ss_pred ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec-------
Confidence 2111111 1234578887777888883 678999999987766654 235678899999889988752
Q ss_pred CCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCce
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDT 561 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~ 561 (721)
.....|++++.++. ..+.+.. .-.....++|+|++++|+++... ...|+++|.++... +.+.. ......
T Consensus 142 ~~~~~I~r~~~dG~----~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~dG~~~---~~~~~~~~~~P~ 212 (318)
T 3sov_A 142 GEVPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNR---QAVVKGSLPHPF 212 (318)
T ss_dssp SSSCEEEEEETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC---EEEECSCCSCEE
T ss_pred CCCCEEEEEEcCCC----CeEEEEECCCCCccEEEEeccCCEEEEEECC--CCEEEEEcCCCCce---EEEecCCCCCce
Confidence 13467888888764 4444433 22456779999999999998753 56899999986552 33322 222234
Q ss_pred eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK 600 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 600 (721)
.+++ |+..|+++.... ..|++++..+|+..+
T Consensus 213 glav--~~~~lywtd~~~------~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 213 ALTL--FEDILYWTDWST------HSILACNKYTGEGLR 243 (318)
T ss_dssp EEEE--ETTEEEEEETTT------TEEEEEETTTCCSCE
T ss_pred EEEE--eCCEEEEEecCC------CeEEEEECCCCCceE
Confidence 5555 456788886543 489999986665433
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.64 E-value=6.2e-07 Score=92.80 Aligned_cols=262 Identities=8% Similarity=-0.021 Sum_probs=139.6
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
....++++| +|+.++. ..+......+|+.++ +++....... ..+-.....++++++|+ |+++......
T Consensus 18 ~p~~va~~~-~g~~~v~-~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~--- 89 (343)
T 2qe8_A 18 APGNITLTP-DGRLFLS-LHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQS--- 89 (343)
T ss_dssp CEEEEEECT-TSCEEEE-ECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHH---
T ss_pred CcceEEECC-CCCEEEE-eCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCc---
Confidence 456788999 9975433 222111114577777 5654432211 11223456789999975 5554432100
Q ss_pred CCcceeEEEeccCCC-Ccceecc-------cCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEeec--Cc--
Q 004971 397 DGNNQLLLENIKSPL-PDISLFR-------FDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFK--NA-- 459 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~-~~~~~~~-------~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~~~--~~-- 459 (721)
....+++..++.++. ....... .....+++++++..+++.. ...|+++|+.+++...+..+ ..
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP 169 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSC
T ss_pred CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccc
Confidence 000357777765442 1111111 1124468888766776662 46799999988876554321 10
Q ss_pred eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~ 539 (721)
....++++|+.+++... ++. ...+. .....++|||||+.|++.... ...||.
T Consensus 170 ~~~~~~~~g~~~~~~~~-------~g~----------------~~~~~---~~~~gia~s~dg~~ly~~~~~--~~~l~~ 221 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQP-------DGT----------------VIRPH---LGVNGIVLDAENEWLYLSPMH--STSMYR 221 (343)
T ss_dssp CSCCCEETTEECBEECT-------TSC----------------EECCC---CCEEEEEECTTSCEEEEEESS--CSEEEE
T ss_pred cccceeECCEEEEeccC-------CCc----------------eecee---cccceeEeccCCCEEEEEeCC--CCeEEE
Confidence 01344455554443321 111 11111 123568999999999988753 348999
Q ss_pred EECC---CCcc---c---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971 540 MDAE---GGEG---Y---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610 (721)
Q Consensus 540 ~d~~---~g~~---~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 610 (721)
++.. .+.. + .+..+ ........+++++||+ |+++.... ..|++||..+++...+.........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~------~~V~~~d~~~G~~~~~~~~~~~~~p 293 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAH------SAIGVITSADRAYKLLVTDEKLSWT 293 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGG------TEEEEEETTTTEEEEEEECGGGSCE
T ss_pred EEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCC------CeEEEEECCCCCEEEEEECCceecC
Confidence 8753 1110 0 01111 1112335789999986 55555432 3899999855665555432112345
Q ss_pred CCeEECCCCCEEEEEE
Q 004971 611 NHPYFSPDGKSIVFTS 626 (721)
Q Consensus 611 ~~~~~SpDG~~l~~~~ 626 (721)
..++|++||+.++..+
T Consensus 294 ~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 294 DSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred CeeEECCCCcEEEEeC
Confidence 7889999987544433
No 243
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.63 E-value=9.4e-06 Score=85.57 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=133.7
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCC----ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGS----NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g----~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
..++|++.+..|+++. ...|+.+++++. ....+. ......+++.+.++.|+++.. ..-.|+.+
T Consensus 115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~--------~~~~I~~~ 186 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--------VLGTVSVA 186 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET--------TTTEEEEE
T ss_pred eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC--------CCCeEEEE
Confidence 4578998888898884 678999999873 333443 234567888888889988752 23356677
Q ss_pred EccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCC
Q 004971 493 NVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 493 ~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~ 570 (721)
+.++. ..+.+.. .......+++.|.+.+|+++... ....|+++++++.. ...+ .........++++|+++
T Consensus 187 ~~~g~----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 187 DTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp CTTTC----SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTT
T ss_pred eCCCC----ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCC
Confidence 77664 4444443 22456778999999999988742 13589999998665 3333 22323457899999999
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK 650 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (721)
.|+++.... ..|+++|+++...+.+... .........++.++..|+++..... .|++
T Consensus 259 ~lY~aD~~~------~~I~~~d~dG~~~~~~~~~-~~~l~~P~gl~v~~~~lywtd~~~~----------------~V~~ 315 (400)
T 3p5b_L 259 RLYWVDSKL------HSISSIDVNGGNRKTILED-EKRLAHPFSLAVFEDKVFWTDIINE----------------AIFS 315 (400)
T ss_dssp EEEEEETTT------TEEEEEETTSCCCEEEEEC-SSTTSSEEEEEEETTEEEEEESSSC----------------SEEE
T ss_pred EEEEEECCC------CEEEEEeCCCCccEEEEeC-CCCCCCCEEEEEeCCEEEEecCCCC----------------eEEE
Confidence 999997653 3899999988776666542 1111222344447778988875443 4999
Q ss_pred EEc-CCCCeEEecc
Q 004971 651 IKL-DGSDLKRLTQ 663 (721)
Q Consensus 651 ~d~-~~~~~~~lt~ 663 (721)
+|. +|+..+.|..
T Consensus 316 ~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 316 ANRLTGSDVNLLAE 329 (400)
T ss_dssp EESSSCCCCEEEEC
T ss_pred EEcCCCCceEEEec
Confidence 995 4445555543
No 244
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.58 E-value=1.4e-05 Score=80.22 Aligned_cols=234 Identities=11% Similarity=0.088 Sum_probs=132.2
Q ss_pred cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971 371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD 447 (721)
Q Consensus 371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~ 447 (721)
.+..++++++|+ |++..... ..++..+..+....... .......++++++|+.++... .+.|++++.+
T Consensus 16 ~~~~i~~d~~g~-l~v~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQHKA--------NMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTT--------TEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccceEECCCCC-EEEEecCC--------CcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 455678888887 34433212 23555554411111110 011233467889987444433 5679999987
Q ss_pred CCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEccC
Q 004971 448 GSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSPD 521 (721)
Q Consensus 448 ~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpD 521 (721)
++...+. ...+..+.++++|+ |+++.. ..+ .|+.++..+ ....+. ........++++++
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~i~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM------NGN--RIGRITDDG-----KIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTT--EEEEECTTC-----CEEEEECSSTTCCEEEEEECTT
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCC-EEEEec------CCc--eEEEECCCC-----CEEEecCCCCCCCCceEEEcCC
Confidence 4444443 22466788999886 444431 123 455555533 333322 22235567889999
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcccceEE--CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~--l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
|+ |++... ....|+++|. +++ +.. +.........++++++|+ |+++.... ..|+++|. +++..
T Consensus 152 g~-l~v~~~--~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~------~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 152 NA-LWFTEN--QNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDA-LWFVEIIG------NKIGRITT-SGEIT 216 (299)
T ss_dssp SC-EEEEET--TTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSS-EEEEETTT------TEEEEECT-TCCEE
T ss_pred CC-EEEEeC--CCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCC-EEEEccCC------ceEEEECC-CCcEE
Confidence 96 444442 1468999999 666 333 222233456789999998 55555322 27999999 66655
Q ss_pred EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
.............++++++|+ |+++....+ .|+++|.+ ++.+.+
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~----------------~i~~~d~~-g~~~~~ 260 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGID-LWFTEWGAN----------------KIGRLTSN-NIIEEY 260 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTT----------------EEEEEETT-TEEEEE
T ss_pred EEECCCCCCCceeEEECCCCC-EEEeccCCc----------------eEEEECCC-CceEEE
Confidence 443221234566789999998 444443322 49999984 444444
No 245
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.55 E-value=2.2e-05 Score=89.53 Aligned_cols=221 Identities=10% Similarity=0.092 Sum_probs=142.7
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC---Ccceecc---cCC
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL---PDISLFR---FDG 421 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~---~~~ 421 (721)
.|+.+++...+...+... ......++|++.+.+|+++.... ..|+..++.+.. ....... ...
T Consensus 405 ~Ir~i~l~~~~~~~l~~~---~~~~~gl~~d~~~~~lY~sD~~~--------~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp SEEEECTTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------CEEEECSSCSCC
T ss_pred ceeEeeccCCcceeeecC---CCceEEEeecccCCeeEEeeccc--------eeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 388888887665554321 33455788998888888865433 346666655421 1111111 223
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..+++.+.++.|+++. ...|+++++++...+.+.. .....+++.|.+.+||++.. .....|+.+++++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-------g~~~~I~~~~~dG 546 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNG 546 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-------SSSCEEEEEETTS
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC-------CCCCeEEEEecCC
Confidence 4578888888898884 6789999999887766652 34678999999999999852 1225688888877
Q ss_pred CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~ 574 (721)
. ..+.+.... .....+++++++++|+++... ...|+++++++... ..+... ......++++.++.+||+
T Consensus 547 ~----~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~--~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~~~lYw 617 (791)
T 3m0c_C 547 V----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFEDKVFW 617 (791)
T ss_dssp C----CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEETTEEEE
T ss_pred C----ceEEEEeCCCCCceEEEEecCCCeEEEEeCC--CCcEEEEecCCCce---EEEecCCCccCCCCEEEEeCCEEEE
Confidence 5 444444433 467778999999999998643 56899999987663 333222 111123344456778988
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEe
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKL 601 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l 601 (721)
+.... ..|++++..+|+.+.+
T Consensus 618 tD~~~------~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 618 TDIIN------EAIFSANRLTGSDVNL 638 (791)
T ss_dssp EETTT------TEEEEEETTTCCCCEE
T ss_pred EECCC------CEEEEEeCCCCcceEE
Confidence 88653 3899999766654433
No 246
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.52 E-value=1.3e-05 Score=91.30 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=135.5
Q ss_pred EEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEccc
Q 004971 432 RIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTT 508 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~ 508 (721)
.|++.....|+.+++++.....+. ...+..++|.+...+|+++.. ..-.|+.++.++.... .....+..
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~--------~~~~I~~~~l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISR 468 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECS
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec--------cceeEEEEeccCCCCCcceeEEEec
Confidence 577777888999999887766665 345678899998889988752 2234666665542000 12223332
Q ss_pred CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587 (721)
Q Consensus 509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~ 587 (721)
.......+++.+.++.|+++... ...|+++++++.. .+.+. ........++++|.+.+|+++.... ...
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~---~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----~~~ 538 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAK 538 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCE
T ss_pred CCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCe---EEEEEeCCCCCcceEEEecCCCCEEEecCCC-----CCe
Confidence 33566789999999999998753 5689999998765 33333 2333357899999988999987542 237
Q ss_pred EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
|++.++++...+.+... .-.....+++++++..||++..... .|++++++|+..+.+..
T Consensus 539 I~~~~~dG~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~----------------~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 539 IKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEE
T ss_pred EEEEecCCCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCC----------------cEEEEecCCCceEEEec
Confidence 99999988776666542 2245677899999999999865442 49999998887776654
No 247
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.46 E-value=8.9e-05 Score=74.26 Aligned_cols=194 Identities=12% Similarity=0.065 Sum_probs=114.8
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..++++++|+.++... ...|+++|.+ ++...+. ...+..++++++|+ ++++.. ....|+.++.++
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--------~~~~i~~~~~~g 134 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQL--------NGDRIGKLTADG 134 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEET--------TTTEEEEECTTS
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEcc--------CCCeEEEECCCC
Confidence 3467788886433332 5679999988 5554443 13466788899886 444431 122456666553
Q ss_pred CCCccceEEc--ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971 497 VDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 497 ~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~ 574 (721)
....+ .........+++.++|+ |++.... ...|+++|. +++... ..+.........++++++|+ |++
T Consensus 135 -----~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v 203 (300)
T 2qc5_A 135 -----TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ--NNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA-LWF 203 (300)
T ss_dssp -----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS-EEE
T ss_pred -----CEEEccCCCCCCCceeEEECCCCC-EEEEecC--CCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC-EEE
Confidence 33322 22224566788999998 5555431 457999998 565311 11222223456789999996 555
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
+.... ..|++++. +++...............++++++|+ |+++....+ .|++++.+
T Consensus 204 ~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~----------------~i~~~~~~ 259 (300)
T 2qc5_A 204 VEIMG------NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGAN----------------QIGRITND 259 (300)
T ss_dssp EETTT------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTT----------------EEEEECTT
T ss_pred EccCC------CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCC----------------eEEEECCC
Confidence 55432 27999998 45544443221234456789999998 555443322 49999984
Q ss_pred CCCeEEe
Q 004971 655 GSDLKRL 661 (721)
Q Consensus 655 ~~~~~~l 661 (721)
++...+
T Consensus 260 -g~~~~~ 265 (300)
T 2qc5_A 260 -NTIQEY 265 (300)
T ss_dssp -SCEEEE
T ss_pred -CcEEEE
Confidence 444443
No 248
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.46 E-value=1.1e-05 Score=80.30 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=116.3
Q ss_pred CCEEEEE-eCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE
Q 004971 430 GDRIAFV-EFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR 504 (721)
Q Consensus 430 G~~la~~-~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 504 (721)
++.|+.. .+..|+++|.++|+...-. . ..+..+.++|+|+.++ .. +. .|+.++..+. .+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~--------~~--~V~~~d~~G~----~~W 69 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY--------SK--GAKMITRDGR----ELW 69 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC--------BS--EEEEECTTSC----EEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC--------CC--CEEEECCCCC----EEE
Confidence 3334443 4788999999888754433 2 2477899999998777 32 12 2455555332 444
Q ss_pred EcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC------CcCceeeEEccCCCEEEEEEc
Q 004971 505 RLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG------PWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 505 ~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~------~~~~~~~~~SpDG~~l~~~~~ 577 (721)
.+.... .....+.++|||+.|+..+.. ...|+.+|.+ |+. +..+... ......+++++||+.|+....
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~--~~~v~~vd~~-Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCGH--PSTILEVNMK-GEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEEST--TEEEEEECTT-SCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred EEcCCCCccccccEECCCCCEEEEecCC--CCEEEEEeCC-CCE--EEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 444432 244567899999988876531 4578888875 442 3333211 112345678999998876554
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 657 (721)
+. .|+.+|.+ |+..--.. ...........++|+.|+..... + .|+.+|.++|+
T Consensus 145 ~~-------~v~~~d~~-G~~~w~~~--~~~~~~~~~~~~~g~~~v~~~~~-~----------------~v~~~d~~tG~ 197 (276)
T 3no2_A 145 TS-------EVREIAPN-GQLLNSVK--LSGTPFSSAFLDNGDCLVACGDA-H----------------CFVQLNLESNR 197 (276)
T ss_dssp TT-------EEEEECTT-SCEEEEEE--CSSCCCEEEECTTSCEEEECBTT-S----------------EEEEECTTTCC
T ss_pred CC-------EEEEECCC-CCEEEEEE--CCCCccceeEcCCCCEEEEeCCC-C----------------eEEEEeCcCCc
Confidence 43 89999998 55433332 22345667889999987654332 1 49999999555
Q ss_pred -eEEecc
Q 004971 658 -LKRLTQ 663 (721)
Q Consensus 658 -~~~lt~ 663 (721)
+.++..
T Consensus 198 ~~w~~~~ 204 (276)
T 3no2_A 198 IVRRVNA 204 (276)
T ss_dssp EEEEEEG
T ss_pred EEEEecC
Confidence 456654
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=3.4e-05 Score=78.15 Aligned_cols=225 Identities=11% Similarity=-0.003 Sum_probs=123.0
Q ss_pred ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CC--cEEEEECC
Q 004971 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FP--GVYVVNSD 447 (721)
Q Consensus 372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~--~l~v~d~~ 447 (721)
..+++|+++|+ |+++... . .+++..+..+..............+++++||+ |+++. .. .|+.++..
T Consensus 34 pegia~~~~g~-lyv~d~~-~-------~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 34 LENLASAPDGT-IFVTNHE-V-------GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp EEEEEECTTSC-EEEEETT-T-------TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred cceEEECCCCC-EEEEeCC-C-------CeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence 44688999887 5554322 2 34666665543222222222234578899998 55553 22 48888888
Q ss_pred CCceEEEee--c--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcce
Q 004971 448 GSNRRQVYF--K--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFP 516 (721)
Q Consensus 448 ~g~~~~l~~--~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~ 516 (721)
+++.+.+.. . ....++..++ ..+++.. ...-.||.++..+.. ...... .........-
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d--------~~~g~i~~~d~~~~~--~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPLSD-TQYLTAD--------SYRGAIWLIDVVQPS--GSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSS-SEEEEEE--------TTTTEEEEEETTTTE--EEEEEECGGGSCSSTTCCSCSEE
T ss_pred CCeEEEEEeCCCccccCcccccCC-CcEEEEE--------CCCCeEEEEeCCCCc--EeEEEECCccccccccCCCCcCC
Confidence 888765542 1 1123343443 3444442 123367777765320 011100 0001111111
Q ss_pred EEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
.++|||++|++.... ..+|++++++. ++......+... .....+++++||+ |+++.... ..|++++.+
T Consensus 173 gis~dg~~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~-l~va~~~~------~~V~~~~~~- 241 (306)
T 2p4o_A 173 GLKRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGN-LYGATHIY------NSVVRIAPD- 241 (306)
T ss_dssp EEEEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCC-EEEECBTT------CCEEEECTT-
T ss_pred CcCcCCCEEEEEeCC--CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCC-EEEEeCCC------CeEEEECCC-
Confidence 249999999888753 56899999875 432112222211 2236789999996 55554332 379999986
Q ss_pred CceEEeeecC-CCCCcCCeEEC---CCCCEEEEEEec
Q 004971 596 TGLRKLIQSG-SAGRANHPYFS---PDGKSIVFTSDY 628 (721)
Q Consensus 596 ~~~~~l~~~~-~~~~~~~~~~S---pDG~~l~~~~~~ 628 (721)
|+...+.... .......++|+ ||+++|++++..
T Consensus 242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 4443332111 12346778998 899999988775
No 250
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.44 E-value=2.1e-05 Score=81.22 Aligned_cols=260 Identities=11% Similarity=0.044 Sum_probs=135.7
Q ss_pred cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-------CCCcccCceeecCCCCEEEEEEecC-
Q 004971 271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-------PGLHAFTPATSPGNNKFIAVATRRP- 342 (721)
Q Consensus 271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~sp~dG~~la~~~~~~- 342 (721)
..++++||++|++.....++...||.+. .+ +...... +-.....++++| +|+ |++.....
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g--------~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~-L~v~D~g~~ 88 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELT--QD--------GLIPFPPQSGNAIITFDTVLGIKSDG-NGI-VWMLDNGNQ 88 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEE--TT--------EEEESCCCCSSCCCCCSCEEEEEECS-SSE-EEEEECHHH
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEEC--CC--------CeecCCCcccCcccceeEeeEEEEcC-CCc-EEEEcCCCC
Confidence 3478899998875322112325666554 21 2222211 123456788999 885 55543220
Q ss_pred CCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEee--CCCCCCCCcceeEEEeccCCCCccee
Q 004971 343 TSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCR--GGSTREDGNNQLLLENIKSPLPDISL 416 (721)
Q Consensus 343 g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 416 (721)
......|++||+++++........ .+......+++++++..++++... .. ..+++.++.++.. ...
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~-------~~i~v~d~~~g~~-~r~ 160 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK-------AALIRVDLQTGLA-ARV 160 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG-------CEEEEEETTTCCE-EEE
T ss_pred cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC-------CeEEEEECCCCCE-EEE
Confidence 001245999999998743322211 111234568899887777665431 22 4577777654421 111
Q ss_pred ccc----CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 417 FRF----DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 417 ~~~----~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
... ......++++|+.+.+.. ++.+..| ......++|||||+.|++... ....||.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~-----------~~~~~gia~s~dg~~ly~~~~--------~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRP-----------HLGVNGIVLDAENEWLYLSPM--------HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECC-----------CCCEEEEEECTTSCEEEEEES--------SCSEEEE
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceece-----------ecccceeEeccCCCEEEEEeC--------CCCeEEE
Confidence 110 010134455554433321 2222111 123467999999999998862 2237788
Q ss_pred EEccC---C-CCcc----ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCce
Q 004971 492 INVDD---V-DGVS----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDT 561 (721)
Q Consensus 492 ~~~~~---~-~~~~----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~ 561 (721)
++... . .... ....+ ........+++++||+ |+++... ...|++||.++|+ +..+... .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~--~~~V~~~d~~~G~---~~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLA--HSAIGVITSADRA---YKLLVTDEKLSWTD 294 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGG--GTEEEEEETTTTE---EEEEEECGGGSCEE
T ss_pred EEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccC--CCeEEEEECCCCC---EEEEEECCceecCC
Confidence 77531 0 0000 01111 1122456789999986 4444432 5689999995566 3333222 22346
Q ss_pred eeEEccCCCEEEEEEc
Q 004971 562 MCNWSPDGEWIAFASD 577 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~ 577 (721)
.++|++||+ |+++..
T Consensus 295 ~va~~~~g~-l~v~~~ 309 (343)
T 2qe8_A 295 SFNFGSDGY-LYFDCN 309 (343)
T ss_dssp EEEECTTSC-EEEEEC
T ss_pred eeEECCCCc-EEEEeC
Confidence 889999987 444444
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.43 E-value=0.0065 Score=70.22 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=143.2
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGSTRE 396 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~~~ 396 (721)
+..+...+ +|. |++.+.. .|.++|..+++...+..... ....+..+...++|. |++....++
T Consensus 265 i~~i~~d~-~g~-lWigt~~------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~G---- 331 (795)
T 4a2l_A 265 IRSLAMDS-QNR-LWIGTFN------DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGG---- 331 (795)
T ss_dssp EEEEEECT-TSC-EEEEESS------CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSC----
T ss_pred EEEEEEcC-CCC-EEEEeCC------hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCC----
Confidence 44555666 665 5444322 28999998877555432110 112244455555554 444443333
Q ss_pred CCcceeEEEeccCCC-Cccee-------cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-----------e
Q 004971 397 DGNNQLLLENIKSPL-PDISL-------FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-----------F 456 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~-~~~~~-------~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-----------~ 456 (721)
+...+..... ..... .......+...++|. |.+. ..+.|..++..++..+.+. .
T Consensus 332 -----l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 332 -----LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS 405 (795)
T ss_dssp -----EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred -----eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence 3333322110 00000 000112233455665 3334 3568999998887765543 1
Q ss_pred cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-----CCCCcceEEccCCCEEEEEEee
Q 004971 457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-----GKNNAFPSVSPDGKWIVFRSTR 531 (721)
Q Consensus 457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~SpDg~~l~~~s~~ 531 (721)
..+..+...++|+.|++.+. .+ -|+.++..++ ..+.+... ...+..+...++|+ |.+...
T Consensus 406 ~~v~~i~~d~~g~~lWigt~-------~~--Gl~~~d~~~~----~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~- 470 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTH-------AG--GLSILHRNSG----QVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL- 470 (795)
T ss_dssp SCEEEEEEETTTTEEEEEET-------TT--EEEEEETTTC----CEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-
T ss_pred ccEEEEEEcCCCCEEEEEeC-------cC--ceeEEeCCCC----cEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-
Confidence 23445666677774666552 12 2555655443 44444321 12344455666676 444443
Q ss_pred CCceeEEEEECCCCcccceEECcCC-------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-
Q 004971 532 TGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ- 603 (721)
Q Consensus 532 ~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~- 603 (721)
..|+++|..+++ ...+... ...+..+..+++|+ |.++... .|++++..+++. .+..
T Consensus 471 ---~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~--------Gl~~~~~~~~~~-~~~~~ 534 (795)
T 4a2l_A 471 ---SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGEE--------GLSVFKQEGLDI-QKASI 534 (795)
T ss_dssp ---SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEESS--------CEEEEEEETTEE-EECCC
T ss_pred ---CceeEEeCCCCe---EEEccccccccccCCceEEEEEECCCCC-EEEEeCC--------ceEEEeCCCCeE-EEecC
Confidence 359999998876 4444321 12346677788887 4444443 599999887765 3321
Q ss_pred -c---CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 604 -S---GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 604 -~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
. .....+..+..+++|+.. +.+.. + |+++|.++++.+.++.
T Consensus 535 ~~~~~l~~~~i~~i~~d~~g~lW-igT~~-G-----------------l~~~d~~~~~~~~~~~ 579 (795)
T 4a2l_A 535 LPVSNVTKLFTNCIYEASNGIIW-VGTRE-G-----------------FYCFNEKDKQIKRYNT 579 (795)
T ss_dssp SCSCGGGGSCEEEEEECTTSCEE-EEESS-C-----------------EEEEETTTTEEEEECG
T ss_pred CCCCCCCCCeeEEEEECCCCCEE-EEeCC-C-----------------ceeECCCCCcEEEeCC
Confidence 0 011234566778888843 33332 3 8888888777666654
No 252
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.42 E-value=2.9e-06 Score=96.17 Aligned_cols=220 Identities=10% Similarity=0.070 Sum_probs=136.8
Q ss_pred eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC----C-CCcceec-ccCC
Q 004971 348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS----P-LPDISLF-RFDG 421 (721)
Q Consensus 348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~~-~~~~ 421 (721)
.|+++++.+.+...+.. .......++|++++..|+++.... ..|+..++.+ . ...+... ....
T Consensus 387 ~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~--------~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp C-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTT--------TSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred ceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCC--------CeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 48888988776544432 133456789999999988854332 3466666654 1 1111110 1123
Q ss_pred CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 422 ~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
..+++.+.+..|+++ ....|+++++++...+.+. ......++++|++.+|+++.. .....|+.++.++
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~-------~~~~~I~~~~~dG 528 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNG 528 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC-------SSSCCEEBCCSSS
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc-------CCCCeEEEEeCCC
Confidence 456777667777777 3678999999987766654 235678899999888888642 1124566666655
Q ss_pred CCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEE
Q 004971 497 VDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWI 572 (721)
Q Consensus 497 ~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l 572 (721)
. ..+.+. ..-.....++|+|++++|+++... ...|+++++++... +.+... ......+++ |+..|
T Consensus 529 ~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~dG~~~---~~~~~~~~~~~~P~glav--d~~~l 597 (699)
T 1n7d_A 529 V----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNR---KTILEDEKRLAHPFSLAV--FEDKV 597 (699)
T ss_dssp C----CCCEESCSSCSSCCCEEECTTTCCEEEEETT--TTEEEEECSSSSCC---EEECCCSSSCSSCCCCEE--ETTEE
T ss_pred C----CeeEEEeCCCCCccEEEEeccCCEEEEEecC--CCeEEEEccCCCce---EEEEecCCcCCCceEeEE--ECCEE
Confidence 3 333332 222456789999999999988753 56899999986552 333221 112234454 45688
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 602 (721)
+++.... ..|++++..+|+..+.+
T Consensus 598 ywtd~~~------~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 598 FWTDIIN------EAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEECSTT------TCEEEEETTTEEEEECC
T ss_pred EEEeCCC------CeEEEEEccCCCceEEe
Confidence 8877543 37999998777655544
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.41 E-value=3.8e-05 Score=78.43 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=113.3
Q ss_pred CceeCc-CCCEEEEEe-CCcEEEEECCCCceEEEe---e----cCceeeEEcC-CCCeEEEEecCCCCCC---------C
Q 004971 423 FPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQVY---F----KNAFSTVWDP-VREAVVYTSGGPEFAS---------E 483 (721)
Q Consensus 423 ~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~l~---~----~~~~~~~~sp-dg~~la~~~~~~~~~~---------~ 483 (721)
.+++.+ +| .|+++. ...|++++.+++..+.+. . .....+++.+ +|+ |+++.....+.. .
T Consensus 84 gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 84 DISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHT
T ss_pred eEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehccc
Confidence 457777 55 566663 456999998877655554 1 1345788999 884 555543211100 1
Q ss_pred CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
...-.|+.++.++. ....+.........++|+|||++|++.... ...|+++++++......+.+....+ ...+
T Consensus 162 ~~~g~v~~~d~~~~----~~~~~~~~~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 162 DKTGRLIKYDPSTK----ETTLLLKELHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp CCCEEEEEEETTTT----EEEEEEEEESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred CCCceEEEEeCCCC----EEEEeccCCccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 23356888887653 444333222345668999999988887653 4689999998632111222211122 4678
Q ss_pred EEccCCCEEEEEEcc-CCC---CCCceeEEEEecCCCceEEeeecCCC---CCcCCeEECCCCCEEEEEEecCCCcCCCC
Q 004971 564 NWSPDGEWIAFASDR-DNP---GSGSFEMYLIHPNGTGLRKLIQSGSA---GRANHPYFSPDGKSIVFTSDYGGISAEPI 636 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~-~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 636 (721)
+++++|+ |+++... ... ......|+++|.++.....+... .. .....+.+ ++..|++++....
T Consensus 235 ~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~-~g~~~~~~~~~~~--~~g~L~v~~~~~~------ 304 (322)
T 2fp8_A 235 KRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP-PPFAGEHFEQIQE--HDGLLYIGTLFHG------ 304 (322)
T ss_dssp EECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC-TTTTTSCCCEEEE--ETTEEEEECSSCS------
T ss_pred EECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECC-CCCccccceEEEE--eCCEEEEeecCCC------
Confidence 9999998 4444432 000 00124799999865433333321 11 12334444 3446666654432
Q ss_pred CCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 637 STPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 637 ~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
.|.+++++.+....+
T Consensus 305 ----------~i~~~~~~~~~~~~~ 319 (322)
T 2fp8_A 305 ----------SVGILVYDKKGNSFV 319 (322)
T ss_dssp ----------EEEEEEC--------
T ss_pred ----------ceEEEecccccCccc
Confidence 488888766544333
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.40 E-value=1.2e-05 Score=81.54 Aligned_cols=209 Identities=11% Similarity=0.094 Sum_probs=119.4
Q ss_pred CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
..++|+++|+ |+++. .+.|+.++.+++....+. ...+..+++++||+ |+++.. ......|+.++...+
T Consensus 35 egia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~------~~~~~~v~~~d~~~g- 105 (306)
T 2p4o_A 35 ENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGW------NADSIPVVSLVKSDG- 105 (306)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEE------CTTSCEEEEEECTTS-
T ss_pred ceEEECCCCC-EEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEec------cCCcceEEEEcCCCC-
Confidence 3479999987 66653 678999998875444333 44567889999998 555431 122346777765443
Q ss_pred CccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE--------C-cCCCcCceeeEEcc
Q 004971 499 GVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR--------L-TEGPWSDTMCNWSP 567 (721)
Q Consensus 499 ~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~--------l-~~~~~~~~~~~~Sp 567 (721)
....+.... .....++..+++ .+++... ....||++|..+++.+ +.. . .........+ +|
T Consensus 106 ---~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~--~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 106 ---TVETLLTLPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp ---CEEEEEECTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred ---eEEEEEeCCCccccCcccccCCC-cEEEEEC--CCCeEEEEeCCCCcEe-EEEECCccccccccCCCCcCCCc--Cc
Confidence 444433321 122334545544 4554442 2458999998765311 110 0 0111112334 89
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCC-Cce--EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNG-TGL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~--~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
||+.|+++.... ..|+++++++ ++. .++... ......+++++||+ |+++....+
T Consensus 177 dg~~lyv~d~~~------~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~-l~va~~~~~-------------- 233 (306)
T 2p4o_A 177 FGNFLYVSNTEK------MLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGN-LYGATHIYN-------------- 233 (306)
T ss_dssp ETTEEEEEETTT------TEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCC-EEEECBTTC--------------
T ss_pred CCCEEEEEeCCC------CEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCC-EEEEeCCCC--------------
Confidence 999998888653 3899999875 332 122221 23467899999997 444333322
Q ss_pred CccEEEEEcCCCCeEEe---ccCCCCCCCceec
Q 004971 645 YGEIFKIKLDGSDLKRL---TQNSFEDGTPAWG 674 (721)
Q Consensus 645 ~~~l~~~d~~~~~~~~l---t~~~~~~~~~~~s 674 (721)
.|++++.++ +...+ .........++|+
T Consensus 234 --~V~~~~~~G-~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 234 --SVVRIAPDR-STTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp --CEEEECTTC-CEEEEECGGGTCTTEEEEEEC
T ss_pred --eEEEECCCC-CEEEEeecccccCCceEEEEe
Confidence 499999874 44332 2222234556776
No 255
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.39 E-value=2.6e-06 Score=96.60 Aligned_cols=200 Identities=11% Similarity=0.023 Sum_probs=127.4
Q ss_pred CCCceeCcCCCEEEEE--eCCcEEEEECCC----CceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDG----SNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~----g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~ 491 (721)
...++|++++..|+++ ....|+++++++ .....+. ...+..+++.+.+..|+++. ...-.|+.
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD--------~~~~~I~v 479 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--------SVLGTVSV 479 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC--------TTTSCEEE
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe--------ccCCeEEE
Confidence 4567999988888887 367899999986 2322222 12355678887788888763 22334566
Q ss_pred EEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971 492 INVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570 (721)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~ 570 (721)
++.++. ..+.+... ......+++.|++.+|+++... ....|+++++++... ...+.........++|+|+++
T Consensus 480 ~d~dg~----~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 480 ADTKGV----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp EBSSSC----CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTC
T ss_pred EecCCC----ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCC
Confidence 666653 44444332 2456778999998888887632 136899999876542 112222223346899999999
Q ss_pred EEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF 649 (721)
Q Consensus 571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (721)
+|+++.... ..|+++++++...+.+.... .......+++ |+..||++....+ .|+
T Consensus 553 ~LY~aD~~~------~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lywtd~~~~----------------~V~ 608 (699)
T 1n7d_A 553 RLYWVDSKL------HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINE----------------AIF 608 (699)
T ss_dssp CEEEEETTT------TEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEEECSTTT----------------CEE
T ss_pred EEEEEecCC------CeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEEEeCCCC----------------eEE
Confidence 999988653 38999999876655554311 1122334554 5568888774433 499
Q ss_pred EEEcCCCCeE
Q 004971 650 KIKLDGSDLK 659 (721)
Q Consensus 650 ~~d~~~~~~~ 659 (721)
+++..+++..
T Consensus 609 ~~d~~~G~~~ 618 (699)
T 1n7d_A 609 SANRLTGSDV 618 (699)
T ss_dssp EEETTTEEEE
T ss_pred EEEccCCCce
Confidence 9998666543
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.30 E-value=2.4e-05 Score=75.46 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=113.3
Q ss_pred ceeCcCCCEEEEEe----CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 424 ~~~SpDG~~la~~~----~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
+.|+ |+ .|+... .+.|.++|+++++.. .+. ....+.....+++++|+...- .++ .++.+|.++.
T Consensus 48 L~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~--~v~v~D~~t~ 117 (262)
T 3nol_A 48 FFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNG--LGFVWNIRNL 117 (262)
T ss_dssp EEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSS--EEEEEETTTC
T ss_pred EEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCC--EEEEEECccC
Confidence 5677 55 566552 247999999999854 333 444555556778889988762 334 4555555443
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCc---CceeeEEccCCCEE
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPW---SDTMCNWSPDGEWI 572 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~---~~~~~~~SpDG~~l 572 (721)
.....+.... ....+++||++|+.+.. ...|+.+|.++.+. +..+. .+.. ..+.+.|. || .|
T Consensus 118 ---~~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~-~G-~l 184 (262)
T 3nol_A 118 ---RQVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV-DG-EI 184 (262)
T ss_dssp ---CEEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred ---cEEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE-CC-EE
Confidence 1344444422 33566789998877653 67899999998875 33333 2211 22346776 77 46
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeeecC-----------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+...... ..|.++|.++|++....... .....+.++|+|+++.|+++...-
T Consensus 185 yan~w~~------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 185 FANVWQT------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp EEEETTS------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEccC------CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 6555432 38999999999987665431 012336799999999999888765
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.28 E-value=7e-05 Score=76.37 Aligned_cols=210 Identities=12% Similarity=0.037 Sum_probs=123.3
Q ss_pred CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEee----------------------cCceeeEEcCCCCeEEEEecC
Q 004971 421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----------------------KNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----------------------~~~~~~~~spdg~~la~~~~~ 477 (721)
...++|+++|+.+++. ..+.|+.++..+++...+.. ..+..+++.+++..|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~- 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC- 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence 4557899998744443 46789999988876654431 13456788874456666642
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccC--C---CCCcceEEcc-CCCEEEEEEee---------------CCcee
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTN--G---KNNAFPSVSP-DGKWIVFRSTR---------------TGYKN 536 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~---~~~~~~~~Sp-Dg~~l~~~s~~---------------~g~~~ 536 (721)
.. .|+.++..++ ..+.+... . .....+++.| +|+ |++.... .....
T Consensus 100 ------~~--~i~~~d~~~g----~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 100 ------YY--HLSVVGSEGG----HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ------TT--EEEEECTTCE----ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred ------CC--CEEEEeCCCC----EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCce
Confidence 12 2566665432 33333221 1 2345578999 886 5555432 12367
Q ss_pred EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC---ceEEeeecCCCCCcCCe
Q 004971 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT---GLRKLIQSGSAGRANHP 613 (721)
Q Consensus 537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~ 613 (721)
|+++|.++++ +..+.........++|+|||+.|+++.... ..|+++++++. ..+.+.. ..+ ...+
T Consensus 167 v~~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~~~------~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi 234 (322)
T 2fp8_A 167 LIKYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEFLS------HQIVKYWLEGPKKGTAEVLVK--IPN-PGNI 234 (322)
T ss_dssp EEEEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEGGG------TEEEEEESSSTTTTCEEEEEE--CSS-EEEE
T ss_pred EEEEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeCCC------CeEEEEECCCCcCCccceEEe--CCC-CCCe
Confidence 9999998776 333322222236789999999988887542 38999998763 3333322 223 6678
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+++++|+. +++........ + .+.....|+++|.++.....+..
T Consensus 235 ~~d~~G~l-~va~~~~~~~~-~-----~~~~~~~v~~~d~~G~~~~~~~~ 277 (322)
T 2fp8_A 235 KRNADGHF-WVSSSEELDGN-M-----HGRVDPKGIKFDEFGNILEVIPL 277 (322)
T ss_dssp EECTTSCE-EEEEEEETTSS-T-----TSCEEEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCE-EEEecCccccc-c-----cCCCccEEEEECCCCCEEEEEEC
Confidence 99999984 44433210000 0 00001359999987665556654
No 258
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.25 E-value=0.001 Score=74.99 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=54.0
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..|+.||+.+|+. +-++..+ .......++.+|..+++...++ .|+.+|+.+|+..--...+.......+.
T Consensus 457 g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~~ 526 (677)
T 1kb0_A 457 GRLLAWDPVAQKA--AWSVEHV-SPWNGGTLTTAGNVVFQGTADG-------RLVAYHAATGEKLWEAPTGTGVVAAPST 526 (677)
T ss_dssp EEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred cEEEEEeCCCCcE--EeecCCC-CCCcCcceEeCCCEEEEECCCC-------cEEEEECCCCceeeeeeCCCCcccCCEE
Confidence 6799999999984 3333222 2224456778888887775553 8999999999876544433333345567
Q ss_pred ECCCCCEEEEEE
Q 004971 615 FSPDGKSIVFTS 626 (721)
Q Consensus 615 ~SpDG~~l~~~~ 626 (721)
|++||+.++...
T Consensus 527 y~~~G~~~v~~~ 538 (677)
T 1kb0_A 527 YMVDGRQYVSVA 538 (677)
T ss_dssp EEETTEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 789998655443
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00016 Score=76.77 Aligned_cols=152 Identities=8% Similarity=0.025 Sum_probs=93.9
Q ss_pred cCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971 323 FTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ 401 (721)
Q Consensus 323 ~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~ 401 (721)
..++++| + +..|+++... ..|+++|+++++...+.. .......++++++|++|+++...+.... ..
T Consensus 140 ~~lavdp-~~~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~----~~ 206 (430)
T 3tc9_A 140 VWLSFDP-KNHNHLYLVGEQ-----HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDR----PN 206 (430)
T ss_dssp CEEEEET-TEEEEEEEEEBT-----EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTS----EE
T ss_pred CEEEECC-CCCCeEEEEeCC-----CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCccc----ce
Confidence 4678886 5 3456654332 569999998877655543 2445677999999998888765432110 22
Q ss_pred eEEEeccCCCCccee--cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971 402 LLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY 473 (721)
Q Consensus 402 l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~ 473 (721)
++.....+....... .......++++|++..|+++ ....|++++.+++....+. ......++|+|+|++|++
T Consensus 207 v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 207 NYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 333333332221111 11234567899954457776 3678999999987764443 134678999999999988
Q ss_pred EecCCCCCCCCCcEEEEEEE
Q 004971 474 TSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~~~ 493 (721)
+.. ....+..+..+
T Consensus 287 ~d~------~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVV------NQHYILRSDYD 300 (430)
T ss_dssp EET------TTTEEEEEEEE
T ss_pred EEC------CCCEEEEEeCC
Confidence 752 34455555554
No 260
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.18 E-value=7.4e-05 Score=72.91 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=100.0
Q ss_pred eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971 460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539 (721)
Q Consensus 460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~ 539 (721)
..+.|+||| +|++++. ..+...|..++..++ .....+.... ......++++|++|+..... ...+++
T Consensus 24 ~Gl~~~~dg-~Lyvstg------~~~~s~v~~iD~~tg---~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~~--~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAEND-TLFESTG------LYGRSSVRQVALQTG---KVENIHKMDD-SYFGEGLTLLNEKLYQVVWL--KNIGFI 90 (266)
T ss_dssp EEEEECSTT-EEEEEEC------STTTCEEEEEETTTC---CEEEEEECCT-TCCEEEEEEETTEEEEEETT--CSEEEE
T ss_pred ccEEEeCCC-eEEEECC------CCCCCEEEEEECCCC---CEEEEEecCC-CcceEEEEEeCCEEEEEEec--CCEEEE
Confidence 578899985 6777652 234556777777654 1233333222 33334566778899888764 568999
Q ss_pred EECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC----CcCCeEE
Q 004971 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG----RANHPYF 615 (721)
Q Consensus 540 ~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~----~~~~~~~ 615 (721)
+|.++.+. +..+..+ ......+++||++|+.+... ..|+++|.++.+.......+..+ ..+.+.|
T Consensus 91 iD~~t~~v--~~~i~~g--~~~g~glt~Dg~~l~vs~gs-------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 91 YDRRTLSN--IKNFTHQ--MKDGWGLATDGKILYGSDGT-------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EETTTTEE--EEEEECC--SSSCCEEEECSSSEEEECSS-------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EECCCCcE--EEEEECC--CCCeEEEEECCCEEEEECCC-------CeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 99998875 5566543 11345678899998876533 38999999998765544321111 2345667
Q ss_pred CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
. || .|+......+ .|.++|++++++.
T Consensus 160 ~-dg-~lyvn~~~~~----------------~V~vID~~tg~V~ 185 (266)
T 2iwa_A 160 I-NG-EVWANIWQTD----------------CIARISAKDGTLL 185 (266)
T ss_dssp E-TT-EEEEEETTSS----------------EEEEEETTTCCEE
T ss_pred E-CC-EEEEecCCCC----------------eEEEEECCCCcEE
Confidence 7 76 5554433322 5999999998864
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.17 E-value=9.8e-05 Score=71.14 Aligned_cols=179 Identities=11% Similarity=-0.032 Sum_probs=112.3
Q ss_pred ceeCcCCCEEEEEe--CCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971 424 PSFSPKGDRIAFVE--FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500 (721)
Q Consensus 424 ~~~SpDG~~la~~~--~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 500 (721)
+.++ ++.|+... .+.|.++|+++++. ..+.....+.....+++++|+...- ..-.++.+|.++.
T Consensus 60 L~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw--------~~~~v~V~D~~Tl--- 126 (268)
T 3nok_A 60 LVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTW--------TEGLLFTWSGMPP--- 126 (268)
T ss_dssp EEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEES--------SSCEEEEEETTTT---
T ss_pred EEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEc--------cCCEEEEEECCcC---
Confidence 4554 45777763 45699999999884 3333334444456678889988762 2345555555443
Q ss_pred cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEEEc
Q 004971 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~~~ 577 (721)
.....+.... ....+++||++|+.+.. ...|+.+|.++.+......+..... ..+.+.|. || .|+....
T Consensus 127 ~~~~ti~~~~---eGwGLt~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw 198 (268)
T 3nok_A 127 QRERTTRYSG---EGWGLCYWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIW 198 (268)
T ss_dssp EEEEEEECSS---CCCCEEEETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred cEEEEEeCCC---ceeEEecCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEEC
Confidence 2344444322 23456689998887653 7799999999987522222322222 23456777 77 4665554
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
.. ..|.++|.++|+........ .....+.++|+|+++.|+++...-
T Consensus 199 ~s------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 199 HS------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp TC------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred CC------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 32 38999999999877655421 112346799999999998877654
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.13 E-value=0.00073 Score=65.48 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=120.3
Q ss_pred CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971 421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD 495 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~ 495 (721)
...++|.|++..|+.+ ....|+.+|+.+...+.+. . .....+++.++++ ++++.. .+..+.++.++.+
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E------~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVISDE------RDYAIYVISLTPN 101 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEEET------TTTEEEEEEECTT
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEEEC------CCCcEEEEEcCCC
Confidence 3457899998888876 3668999999854455554 2 3556788888885 444442 3455556665544
Q ss_pred CCCCccceEEccc------CCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEECc-------CCCcCc
Q 004971 496 DVDGVSAVRRLTT------NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLT-------EGPWSD 560 (721)
Q Consensus 496 ~~~~~~~~~~l~~------~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~-------~~~~~~ 560 (721)
+. ......... .......++|+|++++|+++.++. ...||.++- .+.. +..+. ......
T Consensus 102 ~~--i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~---l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 102 SE--VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNE---LHISKDKALQRQFTLDDV 175 (255)
T ss_dssp CC--EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSC---CEEEECHHHHHTCCSSCC
T ss_pred Ce--eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCc---eeeecchhhccccccCCc
Confidence 31 001122211 112345789999999999987753 347888882 2111 22110 112345
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC--------CCcCCeEECCCCCEEEEEEecCCCc
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA--------GRANHPYFSPDGKSIVFTSDYGGIS 632 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--------~~~~~~~~SpDG~~l~~~~~~~~~~ 632 (721)
..+++.|.-.+|++.+... ..|..+|.++. .+........ .....++|.++|+ ||+.+..+
T Consensus 176 S~l~~dp~tg~lliLS~~s------~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n--- 244 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHES------RALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN--- 244 (255)
T ss_dssp CEEEEETTTTEEEEEETTT------TEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT---
T ss_pred eeEEEcCCCCeEEEEECCC------CeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc---
Confidence 7899999988888888764 48999998765 3333322111 2446799999997 66554432
Q ss_pred CCCCCCCCCCCCCccEEEEEcCC
Q 004971 633 AEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
.+|++..++
T Consensus 245 --------------~~y~f~~~~ 253 (255)
T 3qqz_A 245 --------------RFYRFTPQS 253 (255)
T ss_dssp --------------EEEEEEC--
T ss_pred --------------eEEEEEecC
Confidence 488887654
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=8.7e-05 Score=78.92 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=103.0
Q ss_pred CceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC--c
Q 004971 458 NAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--Y 534 (721)
Q Consensus 458 ~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g--~ 534 (721)
....++++| ++..|+++.. . ..|+.++.++. .+..+.........++|+++|++|+++....+ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~--------~-~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE--------Q-HPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB--------T-EEEEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCCCeEEEEeC--------C-CcEEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 345667777 4666666642 1 56777777654 45555444456778999999998888875432 2
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..++.++.++.. .....+... .....++++|++..|+++.... ..|++++.+++....+...........++
T Consensus 205 ~~v~~~~~~g~~-~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~------~~V~~~~~~~~~~~~~~~~~~~~~P~gia 276 (430)
T 3tc9_A 205 PNNYILTRESGF-KVITELTKG-QNCNGAETHPINGELYFNSWNA------GQVFRYDFTTQETTPLFTIQDSGWEFHIQ 276 (430)
T ss_dssp EEEEEEEGGGTS-CSEEEEEEC-SSCCCEEECTTTCCEEEEETTT------TEEEEEETTTTEEEEEEECSSSSCCEEEE
T ss_pred ceEEEEeCCCce-eeeeeeccC-CCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCcEEEEEEcCCCCcceeEE
Confidence 356667765432 111222222 2236789999555677777543 28999999887664554332223466799
Q ss_pred ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
|+|+|++|+++..... .|++++.++
T Consensus 277 ~~pdG~~lyv~d~~~~----------------~I~~~~~d~ 301 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQH----------------YILRSDYDW 301 (430)
T ss_dssp ECTTSSEEEEEETTTT----------------EEEEEEEET
T ss_pred EcCCCCEEEEEECCCC----------------EEEEEeCCc
Confidence 9999999888776543 499988765
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.07 E-value=0.00027 Score=67.51 Aligned_cols=179 Identities=12% Similarity=0.073 Sum_probs=112.1
Q ss_pred ceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 424 ~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
+.|++ ..|+... .+.|.++|+++++... +. ....+.....+++++|+...- .++ .++.+|.++.
T Consensus 26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~--~v~v~D~~tl 95 (243)
T 3mbr_X 26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNH--EGFVYDLATL 95 (243)
T ss_dssp EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSS--EEEEEETTTT
T ss_pred EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCC--EEEEEECCcC
Confidence 56664 4666662 3589999999998643 33 445555566677889888762 334 4555555443
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEE
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAF 574 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~ 574 (721)
.....+.... ....+++|+++|+.+.. ..+|+.+|.++.+......+..+.. ..+.+.|. +|+ |+.
T Consensus 96 ---~~~~ti~~~~---~Gwglt~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lya 164 (243)
T 3mbr_X 96 ---TPRARFRYPG---EGWALTSDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLA 164 (243)
T ss_dssp ---EEEEEEECSS---CCCEEEECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred ---cEEEEEeCCC---CceEEeeCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEE
Confidence 2334444332 23566789998877643 6789999999887522222322221 23445555 664 655
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
..... ..|.++|..+|++....... .....+.++|+|+++.|+++...-
T Consensus 165 nvw~s------~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 165 NVWLT------SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EETTT------TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EECCC------CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 54332 38999999999877655421 112336799999999998888754
No 265
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.0016 Score=73.47 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=38.1
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT 662 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt 662 (721)
..|+.+|+.+++..--.. .........++.+|..+++. ...+ .|+++|++++++. ++.
T Consensus 457 g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g-~~dg----------------~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQG-TADG----------------RLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEE-CTTS----------------EEEEEETTTCCEEEEEE
T ss_pred cEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEE-CCCC----------------cEEEEECCCCceeeeee
Confidence 579999999987543332 22334455677788877665 3332 5999999888764 444
No 266
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.06 E-value=6.5e-05 Score=77.84 Aligned_cols=173 Identities=7% Similarity=-0.085 Sum_probs=114.9
Q ss_pred CCCceeCcCCCEEEEEeCCcEEEEECCCCc-----------e-EEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSN-----------R-RQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~-----------~-~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 487 (721)
...+++++....++..+...+.+|+++... . ..+. .. +..++| |++.|++.. ++.+
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~--------~~~l 108 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST--------RNAL 108 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE--------SSEE
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc--------CCcE
Confidence 456799999988888888899999865322 1 2233 44 889999 999999873 3678
Q ss_pred EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp 567 (721)
++|++.... ....+.........+.+.+. .++.... ++.|++||+.++. ...+. ..+..++|||
T Consensus 109 ~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~---dG~L~v~dl~~~~---~~~~~---~~Vs~v~WSp 172 (388)
T 1xip_A 109 YSLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKS---TKQLA---QNVTSFDVTN 172 (388)
T ss_dssp EEEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCC---EEEEE---ESEEEEEECS
T ss_pred EEEEchhhh-----ccCccceeecceeeEEecCC--CEEEEEC---CCCEEEEEccCCc---ccccc---CCceEEEEcC
Confidence 888775443 22223333333444455543 2666665 7899999999877 33332 3468899999
Q ss_pred CCCEEEEEEccCCCCCCceeEEEEecCCCce--EEee-e-----c--CCCCCcCCeEECCCCCEEEEEEecC
Q 004971 568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGL--RKLI-Q-----S--GSAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~-~-----~--~~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+| ++++..++ .+.+|+.++++. ++.. . . ++...+.++.|.+++++++......
T Consensus 173 kG--~~vg~~dg-------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~ 235 (388)
T 1xip_A 173 SQ--LAVLLKDR-------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVI 235 (388)
T ss_dssp SE--EEEEETTS-------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCC
T ss_pred Cc--eEEEEcCC-------cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCC
Confidence 99 56666654 678888888774 2222 1 0 1345677899999999987655543
No 267
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.04 E-value=0.014 Score=64.21 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=62.0
Q ss_pred ceEEccCCCEEEEEEee----------------------------------CCceeEEEEECCCCcccceEECcCCCcCc
Q 004971 515 FPSVSPDGKWIVFRSTR----------------------------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~----------------------------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~ 560 (721)
.++++|++..|++.... .....|+.+|+.+|+. +-+...... .
T Consensus 390 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~--~W~~~~~~~-~ 466 (571)
T 2ad6_A 390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA--KWTKWEKFA-A 466 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE--EEEEEESSC-C
T ss_pred CceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE--EEEecCCCC-c
Confidence 46899999988876542 1246899999999884 333322211 1
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
....+...+..|++...++ .|+.+|..+|+..-....+.......+.+..||+.++....
T Consensus 467 ~~~~~~t~gg~v~~g~~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATLDG-------YLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp CSBCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cceeEEECCCEEEEEcCCC-------eEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence 2233344566677765554 89999999998764444322222233456688875554443
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.00 E-value=0.00053 Score=72.82 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=83.5
Q ss_pred cCceeecCC--CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971 323 FTPATSPGN--NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN 400 (721)
Q Consensus 323 ~~~~~sp~d--G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~ 400 (721)
..++++| + +..|++.... ..|+++|+++++...+.. .......++++++|+ |+++...+... ..
T Consensus 142 ~gvavd~-~s~~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~----~~ 207 (433)
T 4hw6_A 142 WRMMFDP-NSNYDDLYWVGQR-----DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDT----NT 207 (433)
T ss_dssp CEEEECT-TTTTCEEEEECBT-----SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC-EEEEECCSCTT----SE
T ss_pred ceEEEcc-ccCCCEEEEEeCC-----CCEEEEECCCCEEEEeec---CCCCccEEEECCCCC-EEEEcCCCCcc----cc
Confidence 4678887 6 3456664322 469999998887655532 234467789999999 66655432110 02
Q ss_pred eeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCce-EEEe----ecCceeeEEcCCCCeE
Q 004971 401 QLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNR-RQVY----FKNAFSTVWDPVREAV 471 (721)
Q Consensus 401 ~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~-~~l~----~~~~~~~~~spdg~~l 471 (721)
.++.......... ..........++++|++..|++.. ...|++++.+++.. ..+. ......++|+|+|++|
T Consensus 208 gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp EEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred eEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 2333332222110 111112245578999444576663 56799999987775 4443 1223469999999999
Q ss_pred EEEe
Q 004971 472 VYTS 475 (721)
Q Consensus 472 a~~~ 475 (721)
+++.
T Consensus 288 Yvad 291 (433)
T 4hw6_A 288 YIIY 291 (433)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8875
No 269
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=98.00 E-value=0.00071 Score=76.12 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=146.8
Q ss_pred eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCc--------ccCcEEcCCCCEEEEEEeeCCCC--CC
Q 004971 327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH--------HLNPFISPDSSRVGYHKCRGGST--RE 396 (721)
Q Consensus 327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~--------~~~~~~Spdg~~l~~~~~~~~~~--~~ 396 (721)
++| ||+++++.....|++...++++|+++++. +...-.+... ...++|. |.+.+++....+... ..
T Consensus 137 ~~~-~~~~~~~~ls~~G~d~~~~~~~d~~t~~~--~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 137 CFQ-NPNRYLISMSFGGKDEMFFREWDLEKKDF--VKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp CSS-STTEEEEEEEETTCSEEEEEEEETTTTEE--CTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTT
T ss_pred cCC-CCCEEEEEeCCCCCceeEEEEEECCcCCc--CCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcC
Confidence 789 99999999999999999999999999973 3211111111 1344887 666676654322211 11
Q ss_pred CCcceeEEEeccCCCCc-ceecccCCC----CceeCcCCCE----EEEE-e----CCcEEEEECCC--CceEEEeecCce
Q 004971 397 DGNNQLLLENIKSPLPD-ISLFRFDGS----FPSFSPKGDR----IAFV-E----FPGVYVVNSDG--SNRRQVYFKNAF 460 (721)
Q Consensus 397 ~~~~~l~~~~~~~~~~~-~~~~~~~~~----~~~~SpDG~~----la~~-~----~~~l~v~d~~~--g~~~~l~~~~~~ 460 (721)
....+++.+.+.++... ...+..... .+..++|+++ +++. . ...+++.+++. ++..+|......
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 22356788877766322 122221111 1345677773 3332 1 35788888764 444555422223
Q ss_pred eeEEcCCCCeEEEEecCCCCC--CCCCcEEEEEEEccCCCC----ccceEE-cccCC-CCCcceEEccCCCEEEEEEeeC
Q 004971 461 STVWDPVREAVVYTSGGPEFA--SESSEVDIISINVDDVDG----VSAVRR-LTTNG-KNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~--~~~~~~~i~~~~~~~~~~----~~~~~~-l~~~~-~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
.+..+.++ ++++....+.-. ....+..|+.++.+.... ....+. ++... .....+.|+.| +|++....+
T Consensus 293 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDN 369 (711)
T ss_dssp EEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEET
T ss_pred eEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEEC
Confidence 34455566 444433211000 001344566666654200 012333 33332 33445667755 577777777
Q ss_pred CceeEEEEECCCCcccceEE---CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 533 GYKNLYIMDAEGGEGYGLHR---LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 533 g~~~l~~~d~~~g~~~~~~~---l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
+..+|+++++.+|+.. ... +.. .+.+.....+++++.+++..... .....+|.+|+. ++.+.+..
T Consensus 370 ~~~~l~~~~~~~g~~~-~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWT-KPVVLKLPY-QNAIFGMSSYEEEEEALITIENS---IVPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp TEEEEEEECEETTEEC-CCEEECCCS-TTCEEEEECCTTCSCEEEEEECS---SSCCEEEEECTT-SCEEEEEC
T ss_pred CEEEEEEEECCCCceE-EEeccCCCC-CeEEEEEeecCcCCEEEEEEecC---CCCCEEEEEeCC-CcEEEEec
Confidence 7889999998776310 222 332 23344556678888787776543 355689999998 66666654
No 270
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.91 E-value=0.01 Score=61.52 Aligned_cols=245 Identities=12% Similarity=0.041 Sum_probs=119.3
Q ss_pred CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971 331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP 410 (721)
Q Consensus 331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 410 (721)
++..|++... +..|+.+|.++|+..--... .......+... +..|++....+ .++..+..++
T Consensus 102 ~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~--~~~~~~~p~~~--~~~v~v~~~~g---------~l~~~d~~tG 163 (376)
T 3q7m_A 102 SGGHVYIGSE-----KAQVYALNTSDGTVAWQTKV--AGEALSRPVVS--DGLVLIHTSNG---------QLQALNEADG 163 (376)
T ss_dssp ETTEEEEEET-----TSEEEEEETTTCCEEEEEEC--SSCCCSCCEEE--TTEEEEECTTS---------EEEEEETTTC
T ss_pred eCCEEEEEcC-----CCEEEEEECCCCCEEEEEeC--CCceEcCCEEE--CCEEEEEcCCC---------eEEEEECCCC
Confidence 5556666432 24599999999985432221 11122234443 33555433222 2444444333
Q ss_pred CCcceeccc-------CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEee-c-------------CceeeEEcCCC
Q 004971 411 LPDISLFRF-------DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF-K-------------NAFSTVWDPVR 468 (721)
Q Consensus 411 ~~~~~~~~~-------~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~-~-------------~~~~~~~spdg 468 (721)
......... ....+... ++ .+++.. .+.|+.+|..+|+...-.. . ....+.. ++
T Consensus 164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~ 239 (376)
T 3q7m_A 164 AVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN 239 (376)
T ss_dssp CEEEEEECCC-----CCCCCCEEE-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET
T ss_pred cEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC
Confidence 211111000 01223333 33 455543 5679999998887644331 1 0112222 34
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971 469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY 548 (721)
Q Consensus 469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~ 548 (721)
..+++.+ .++ .|+.++...+ +.. .......... ...++..|++.+. +..|+.+|..+|+.
T Consensus 240 ~~v~~~~-------~~g--~l~~~d~~tG----~~~-w~~~~~~~~~--~~~~~~~l~~~~~---~g~l~~~d~~tG~~- 299 (376)
T 3q7m_A 240 GVVFALA-------YNG--NLTALDLRSG----QIM-WKRELGSVND--FIVDGNRIYLVDQ---NDRVMALTIDGGVT- 299 (376)
T ss_dssp TEEEEEC-------TTS--CEEEEETTTC----CEE-EEECCCCEEE--EEEETTEEEEEET---TCCEEEEETTTCCE-
T ss_pred CEEEEEe-------cCc--EEEEEECCCC----cEE-eeccCCCCCC--ceEECCEEEEEcC---CCeEEEEECCCCcE-
Confidence 5566554 123 3455555432 211 1111111222 3335677887775 56899999999984
Q ss_pred ceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 549 GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 549 ~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
.-... ........+... +..|++...++ .|+.+|..+|+..-............+... +..|++.+.
T Consensus 300 -~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g-------~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~ 367 (376)
T 3q7m_A 300 -LWTQSDLLHRLLTSPVLY--NGNLVVGDSEG-------YLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAK 367 (376)
T ss_dssp -EEEECTTTTSCCCCCEEE--TTEEEEECTTS-------EEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBT
T ss_pred -EEeecccCCCcccCCEEE--CCEEEEEeCCC-------eEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeC
Confidence 22222 111222344443 45777777654 799999999886544332112223344443 445666554
Q ss_pred cC
Q 004971 628 YG 629 (721)
Q Consensus 628 ~~ 629 (721)
++
T Consensus 368 ~G 369 (376)
T 3q7m_A 368 DG 369 (376)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.90 E-value=0.0023 Score=61.93 Aligned_cols=199 Identities=10% Similarity=0.049 Sum_probs=120.3
Q ss_pred CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc--cCCCCceeCcCCCEEEEE-eCCcEEEEE
Q 004971 369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGDRIAFV-EFPGVYVVN 445 (721)
Q Consensus 369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~la~~-~~~~l~v~d 445 (721)
.....+++|+|+++.|+.+.... ..++..+..+......... .+...+++.++|++++.. ....+++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~--------~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKP--------AAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETT--------EEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCC--------CeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 34577899999999998876653 4677777763321111111 233456788888543332 366788888
Q ss_pred CCCCce-E---EEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-----
Q 004971 446 SDGSNR-R---QVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT----- 508 (721)
Q Consensus 446 ~~~g~~-~---~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~----- 508 (721)
+..... . .+. +.....++|+|++++|+++.. .....||.++.--. ......+..
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E-------~~p~~i~~~~g~~~--~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE-------KNPIEVYKVNGLLS--SNELHISKDKALQR 168 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE-------SSSEEEEEEESTTC--SSCCEEEECHHHHH
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC-------cCCceEEEEccccc--CCceeeecchhhcc
Confidence 764432 2 111 112368999999999999873 33557887772100 001222211
Q ss_pred --CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-------cCceeeEEccCCCEEEEEEccC
Q 004971 509 --NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-------WSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 509 --~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-------~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.-.....+++.|....|++.+.. ...|..+|.++ +......|..+. .....++|.|+|+ |++.+...
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~--s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n 244 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHE--SRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN 244 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETT--TTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred ccccCCceeEEEcCCCCeEEEEECC--CCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc
Confidence 11345678999999999988874 56788999874 443334444321 1346799999997 77666553
Q ss_pred CCCCCceeEEEEecCC
Q 004971 580 NPGSGSFEMYLIHPNG 595 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~ 595 (721)
.+|++...+
T Consensus 245 -------~~y~f~~~~ 253 (255)
T 3qqz_A 245 -------RFYRFTPQS 253 (255)
T ss_dssp -------EEEEEEC--
T ss_pred -------eEEEEEecC
Confidence 788886543
No 272
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0026 Score=67.67 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=88.5
Q ss_pred cCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-CCCcccCcEE-------cCCCCEEEEEEeeCCC
Q 004971 323 FTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-PKTHHLNPFI-------SPDSSRVGYHKCRGGS 393 (721)
Q Consensus 323 ~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-~~~~~~~~~~-------Spdg~~l~~~~~~~~~ 393 (721)
..++|+| . +..|++.... ...|+++|++++....+..... .......++| +++|++|+++......
T Consensus 142 ~~la~dp-~~~~~Lyv~~~~----~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 142 GRLAFDP-LNKDHLYICYDG----HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEET-TEEEEEEEEEET----EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CEEEEcc-CCCCEEEEEECC----CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4678887 5 4455554332 3569999999988766653211 1223567889 9999988887665421
Q ss_pred CCCCCcceeEEEeccC--CCC-----cceecccCCCCceeCcCCCEEEEEe--CCcEEEEECC-------CCce------
Q 004971 394 TREDGNNQLLLENIKS--PLP-----DISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSD-------GSNR------ 451 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~-------~g~~------ 451 (721)
. .....+++.+... ... ...........++++|++..|+++. .+.|+++|++ ++..
T Consensus 217 ~--~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 G--DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp G--GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred c--ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 0 0002344443222 111 0111112345578899877888874 6679999997 5553
Q ss_pred ------EEEe----ecCceeeEEcCCCCeEEEEe
Q 004971 452 ------RQVY----FKNAFSTVWDPVREAVVYTS 475 (721)
Q Consensus 452 ------~~l~----~~~~~~~~~spdg~~la~~~ 475 (721)
..+. ......++|+|+|+.|+++-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 2333 23467899999999888874
No 273
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.89 E-value=0.0016 Score=66.03 Aligned_cols=194 Identities=22% Similarity=0.294 Sum_probs=107.9
Q ss_pred CCEEEEEe-CCcEEEEECCCCceEEE-e--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 430 GDRIAFVE-FPGVYVVNSDGSNRRQV-Y--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 430 G~~la~~~-~~~l~v~d~~~g~~~~l-~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
+..|++.. .+.|+.+|.+ ++.... . ...+..+...++|. |++.+ .+ -.|+.++..+. ....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt-------~~--~~l~~~d~~g~----~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS-------ND--NYLYAINPDGT----EKWR 171 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC-------TT--SEEEEECTTSC----EEEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc-------CC--CEEEEECCCCC----EeEE
Confidence 33565554 6789999998 554322 2 23345667777776 54543 12 24555555432 3233
Q ss_pred cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971 506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS 585 (721)
Q Consensus 506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 585 (721)
..........+...++|. |++.+ ..|+++| .+++. ..........+..+..+++|. |+++..+.
T Consensus 172 ~~~~~~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~------ 235 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTE--KWNFYAGYWTVTRPAISEDGT-IYVTSLDG------ 235 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCE--EEEECCSSCCCSCCEECTTSC-EEEEETTT------
T ss_pred EecCCCceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcE--EEEEccCCcceeceEECCCCe-EEEEcCCC------
Confidence 333333456677778887 44333 5699999 55553 333333333456788888886 55555543
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~ 665 (721)
.|+.++.++........ .......+...++|+ |++.+.++ .|+++|.++..........
T Consensus 236 -gl~~~~~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~g-----------------gl~~~d~~g~~~~~~~~~~ 294 (330)
T 3hxj_A 236 -HLYAINPDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYDG-----------------HLYAINPDGTEKWNFETGS 294 (330)
T ss_dssp -EEEEECTTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTTC-----------------EEEEECTTSCEEEEEECSS
T ss_pred -eEEEECCCCCEeEEeeC--CCCccccceEcCCCe-EEEecCCC-----------------CEEEECCCCcEEEEEEcCC
Confidence 79999865544444332 233445677777775 44444432 3999997544444443333
Q ss_pred CCCCCceecC
Q 004971 666 FEDGTPAWGP 675 (721)
Q Consensus 666 ~~~~~~~~sp 675 (721)
....++...+
T Consensus 295 ~~~~~~~~d~ 304 (330)
T 3hxj_A 295 WIIATPVIDE 304 (330)
T ss_dssp CCCSCCEECT
T ss_pred ccccceEEcC
Confidence 3334455433
No 274
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.89 E-value=0.013 Score=60.73 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=136.0
Q ss_pred cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCCC----------CCccccccCCCCCEEEEEecCCCC
Q 004971 171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPYG----------VADFSPAVSPSGKYTAVASYGNKG 239 (721)
Q Consensus 171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~~----------~~~~~p~~SPDG~~la~~~~~~~~ 239 (721)
+|.+++..|++.... ..|+.++.++|+.. ...... .....|.. ++..|++...
T Consensus 48 ~p~v~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---- 111 (376)
T 3q7m_A 48 HPALADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSE---- 111 (376)
T ss_dssp CCEEETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEET----
T ss_pred ccEEECCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcC----
Confidence 576778877765433 27899998777653 332211 11112222 4455555442
Q ss_pred CCcccceeeeeEEEEEcCCCceeEEEeccC---CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC
Q 004971 240 WDGEVEMLSTDIYIFLTRDGTQRVKIVENG---GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT 316 (721)
Q Consensus 240 w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~---~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~ 316 (721)
...|+.+|.++|+..--..... ..|... ++++++. .. ++ .++.++...+. ......
T Consensus 112 --------~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~--~~-~g--~l~~~d~~tG~-------~~W~~~ 170 (376)
T 3q7m_A 112 --------KAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIH--TS-NG--QLQALNEADGA-------VKWTVN 170 (376)
T ss_dssp --------TSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEE--CT-TS--EEEEEETTTCC-------EEEEEE
T ss_pred --------CCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEE--cC-CC--eEEEEECCCCc-------EEEEEe
Confidence 2479999999998653322221 123333 4566662 21 33 33323322222 222221
Q ss_pred CCCCc-----ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---------cccCcEEcCCCC
Q 004971 317 PPGLH-----AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---------HHLNPFISPDSS 382 (721)
Q Consensus 317 ~~~~~-----~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---------~~~~~~~Spdg~ 382 (721)
..... ...+.+ ++..+++. ..+..|+.+|.++|+..-......+.. ....+... +.
T Consensus 171 ~~~~~~~~~~~~~~~~---~~~~v~~g-----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~ 240 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTT---AFGAAVVG-----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG 240 (376)
T ss_dssp CCC-----CCCCCCEE---ETTEEEEC-----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TT
T ss_pred CCCCceeecCCCCcEE---ECCEEEEE-----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CC
Confidence 11100 123333 33455552 233459999999887533222111100 11223332 45
Q ss_pred EEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEee----c
Q 004971 383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF----K 457 (721)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~----~ 457 (721)
.|++....+ .++..+..++... ....... ......++..|++.. .+.|+.+|..+|+...-.. .
T Consensus 241 ~v~~~~~~g---------~l~~~d~~tG~~~-w~~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 241 VVFALAYNG---------NLTALDLRSGQIM-WKRELGS-VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp EEEEECTTS---------CEEEEETTTCCEE-EEECCCC-EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred EEEEEecCc---------EEEEEECCCCcEE-eeccCCC-CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence 555543222 3555555444221 1111111 112223455666664 6789999999888654332 1
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCcee
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKN 536 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~ 536 (721)
....+.. .+..|++.+ .++ .|+.++...+ .......... .....+... +..|++.+. +..
T Consensus 310 ~~~~~~~--~~~~l~v~~-------~~g--~l~~~d~~tG---~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~---~G~ 370 (376)
T 3q7m_A 310 LLTSPVL--YNGNLVVGD-------SEG--YLHWINVEDG---RFVAQQKVDSSGFQTEPVAA--DGKLLIQAK---DGT 370 (376)
T ss_dssp CCCCCEE--ETTEEEEEC-------TTS--EEEEEETTTC---CEEEEEECCTTCBCSCCEEE--TTEEEEEBT---TSC
T ss_pred cccCCEE--ECCEEEEEe-------CCC--eEEEEECCCC---cEEEEEecCCCcceeCCEEE--CCEEEEEeC---CCE
Confidence 2223333 355677664 233 4555554443 1222222212 122334433 456766665 566
Q ss_pred EEEEE
Q 004971 537 LYIMD 541 (721)
Q Consensus 537 l~~~d 541 (721)
|+.++
T Consensus 371 l~~~~ 375 (376)
T 3q7m_A 371 VYSIT 375 (376)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87775
No 275
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.88 E-value=0.013 Score=66.15 Aligned_cols=82 Identities=13% Similarity=-0.029 Sum_probs=52.1
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..|+.||+.+|+. +-++..+. ......++..|..|+++..++ .|+.||.++|+..--...+.......+.
T Consensus 455 g~l~A~D~~tG~~--~W~~~~~~-~~~~g~~~tagglvf~gt~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~t 524 (689)
T 1yiq_A 455 GKLIAWDPVKQQA--AWEVPYVT-IFNGGTLSTAGNLVFEGSADG-------RVIAYAADTGEKLWEQPAASGVMAAPVT 524 (689)
T ss_dssp EEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred eeEEEEECCCCCe--EeEccCCC-CccCccceECCCEEEEECCCC-------cEEEEECCCCccceeeeCCCCcccCceE
Confidence 5799999999984 33332222 123346677788777765554 8999999999865433332333334577
Q ss_pred ECCCCCEEEEEE
Q 004971 615 FSPDGKSIVFTS 626 (721)
Q Consensus 615 ~SpDG~~l~~~~ 626 (721)
|+.||+..+...
T Consensus 525 y~~~G~qyv~~~ 536 (689)
T 1yiq_A 525 YSVDGEQYVTFM 536 (689)
T ss_dssp EEETTEEEEEEE
T ss_pred EEECCEEEEEEE
Confidence 889998654443
No 276
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.87 E-value=0.0062 Score=61.63 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=96.8
Q ss_pred CCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
..+...++|. |++.. .+.|+.+|.+ ++.. ... ...+..+...++|. |++.+ + .|+.++..+.
T Consensus 140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---------~--~l~~~d~~g~ 205 (330)
T 3hxj_A 140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---------D--KVYAINPDGT 205 (330)
T ss_dssp SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---------S--SEEEECTTSC
T ss_pred eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---------C--EEEEECCCCc
Confidence 3456667776 44444 5889999998 5543 332 33455667767776 44432 2 3444443322
Q ss_pred CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
..............+...++|. |++.+. ...|+.+|..+.. +............+...++|+ |+++..
T Consensus 206 ----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~---~~gl~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~ 273 (330)
T 3hxj_A 206 ----EKWNFYAGYWTVTRPAISEDGT-IYVTSL---DGHLYAINPDGTE---KWRFKTGKRIESSPVIGNTDT-IYFGSY 273 (330)
T ss_dssp ----EEEEECCSSCCCSCCEECTTSC-EEEEET---TTEEEEECTTSCE---EEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred ----EEEEEccCCcceeceEECCCCe-EEEEcC---CCeEEEECCCCCE---eEEeeCCCCccccceEcCCCe-EEEecC
Confidence 2333333334566788888875 555554 4679999865433 333333333334567776775 666665
Q ss_pred cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
++ .|+.+|. +++....... ....+..+..+++|+ |++.+.+
T Consensus 274 ~g-------gl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 274 DG-------HLYAINP-DGTEKWNFET-GSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp TC-------EEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCC-EEEECTT
T ss_pred CC-------CEEEECC-CCcEEEEEEc-CCccccceEEcCCCE-EEEEcCC
Confidence 53 7999997 4443333322 334566778878887 4444433
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.00024 Score=75.66 Aligned_cols=163 Identities=11% Similarity=0.135 Sum_probs=103.3
Q ss_pred ceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEE-------ccCCCEEE
Q 004971 459 AFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSV-------SPDGKWIV 526 (721)
Q Consensus 459 ~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~-------SpDg~~l~ 526 (721)
...++++| +...|+++.. ....|+.++..+. .+..+.... .....++| +++|++|+
T Consensus 141 p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~~~~----~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly 208 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYD--------GHKAIQLIDLKNR----MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI 208 (496)
T ss_dssp EEEEEEETTEEEEEEEEEE--------TEEEEEEEETTTT----EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred CCEEEEccCCCCEEEEEEC--------CCCeEEEEECCCC----EEEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence 34566777 4666666642 2456888887764 555554332 23566889 99999988
Q ss_pred EEEeeCC----ceeEEEEECCC-Ccccc---eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC----
Q 004971 527 FRSTRTG----YKNLYIMDAEG-GEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN---- 594 (721)
Q Consensus 527 ~~s~~~g----~~~l~~~d~~~-g~~~~---~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~---- 594 (721)
+.....+ ...+++++... |.... ...+.... ....++.+|+++.|+++.... ..|+++|++
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~------g~V~r~d~~~~~~ 281 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEK------GQVFRLDLVDYFK 281 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTT------TEEEEECHHHHHH
T ss_pred EEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCC------CEEEEEecccccc
Confidence 8876542 24688887554 33210 01222222 235788999888898888754 279999997
Q ss_pred ---CCce------------EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 595 ---GTGL------------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 595 ---~~~~------------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
+++. .++...+.......++|+|+|++|+++..... .|++++.++.
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h----------------~I~kid~dg~ 342 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH----------------YFMRSDYDEI 342 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT----------------EEEEEEEETT
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC----------------EEEEEecCCC
Confidence 5553 23333222344568999999998888775543 4999776653
No 278
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.79 E-value=0.1 Score=60.12 Aligned_cols=188 Identities=9% Similarity=0.119 Sum_probs=108.0
Q ss_pred eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971 425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD 496 (721)
Q Consensus 425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~ 496 (721)
...++|+.|.+.. ...|++++..+++.+.+. ...+..+...++|+ |++.+. . -|+.++..+
T Consensus 412 ~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~--------~--Gl~~~~~~~ 480 (795)
T 4a2l_A 412 YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL--------S--ALVRFNPEQ 480 (795)
T ss_dssp EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES--------S--CEEEEETTT
T ss_pred EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec--------C--ceeEEeCCC
Confidence 4456776354544 578999999888776654 12345566666665 344331 1 255555544
Q ss_pred CCCccceEEcccC-------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---C----CCcCcee
Q 004971 497 VDGVSAVRRLTTN-------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---E----GPWSDTM 562 (721)
Q Consensus 497 ~~~~~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~----~~~~~~~ 562 (721)
. ....+... ...+..+...++|+ |.+... ..|++++..+++ . .+. . ....+..
T Consensus 481 ~----~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~----~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~ 547 (795)
T 4a2l_A 481 R----SFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE----EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNC 547 (795)
T ss_dssp T----EEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES----SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEE
T ss_pred C----eEEEccccccccccCCceEEEEEECCCCC-EEEEeC----CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEE
Confidence 2 33443321 12344556677776 444443 359999987765 3 221 1 1123456
Q ss_pred eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH 640 (721)
Q Consensus 563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 640 (721)
+..+++|+ |.++... .|+++|..+++.+...... ....+..+...++|+. .+.+ ..+
T Consensus 548 i~~d~~g~-lWigT~~--------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l-Wi~t-~~G---------- 606 (795)
T 4a2l_A 548 IYEASNGI-IWVGTRE--------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRL-WLST-NRG---------- 606 (795)
T ss_dssp EEECTTSC-EEEEESS--------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCE-EEEE-TTE----------
T ss_pred EEECCCCC-EEEEeCC--------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCE-EEEc-CCc----------
Confidence 77788887 4444443 5999999887766554321 1223455677778874 3333 332
Q ss_pred CCCCCccEEEEEcCCCCeEEeccC
Q 004971 641 QYQPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 641 ~~~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
|.+++.++++.+.++..
T Consensus 607 -------l~~~~~~~~~~~~~~~~ 623 (795)
T 4a2l_A 607 -------ISCFNPETEKFRNFTES 623 (795)
T ss_dssp -------EEEEETTTTEEEEECGG
T ss_pred -------eEEEcCCCCcEEEcCCc
Confidence 88888888777776653
No 279
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.78 E-value=0.00071 Score=65.17 Aligned_cols=158 Identities=9% Similarity=0.092 Sum_probs=99.1
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
.+.|+ |+ .|+.++ ...+...|..++..++ .....+.. +........+++|++|+....+ ...++++
T Consensus 47 GL~~~-~~-~Lyest------G~~g~S~v~~vD~~Tg---kv~~~~~l-~~~~FgeGit~~g~~ly~ltw~--~~~v~v~ 112 (262)
T 3nol_A 47 GFFYR-NG-YFYEST------GLNGRSSIRKVDIESG---KTLQQIEL-GKRYFGEGISDWKDKIVGLTWK--NGLGFVW 112 (262)
T ss_dssp EEEEE-TT-EEEEEE------EETTEEEEEEECTTTC---CEEEEEEC-CTTCCEEEEEEETTEEEEEESS--SSEEEEE
T ss_pred eEEEE-CC-EEEEEC------CCCCCceEEEEECCCC---cEEEEEec-CCccceeEEEEeCCEEEEEEee--CCEEEEE
Confidence 45676 44 666665 2345667778887765 12333332 2244445577789999988765 5689999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCc---CCeEEC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRA---NHPYFS 616 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~---~~~~~S 616 (721)
|.++.+. +.++.... ....+++||++|+.+... ..|+.+|..+.+...-..... ...+ +.+.|.
T Consensus 113 D~~t~~~--~~ti~~~~---eG~glt~dg~~L~~SdGs-------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 113 NIRNLRQ--VRSFNYDG---EGWGLTHNDQYLIMSDGT-------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp ETTTCCE--EEEEECSS---CCCCEEECSSCEEECCSS-------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred ECccCcE--EEEEECCC---CceEEecCCCEEEEECCC-------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 9999885 55555432 234566889988777643 389999999887655433211 1122 235676
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
||+ |+......+ .|+++|++++++...-
T Consensus 181 -~G~-lyan~w~~~----------------~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 181 -DGE-IFANVWQTN----------------KIVRIDPETGKVTGII 208 (262)
T ss_dssp -TTE-EEEEETTSS----------------EEEEECTTTCBEEEEE
T ss_pred -CCE-EEEEEccCC----------------eEEEEECCCCcEEEEE
Confidence 774 554333332 5999999999875433
No 280
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.72 E-value=0.002 Score=65.66 Aligned_cols=164 Identities=11% Similarity=0.099 Sum_probs=100.6
Q ss_pred CCcEEEEECCC--CceEEEe-ec--------CceeeEEcC--CCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971 438 FPGVYVVNSDG--SNRRQVY-FK--------NAFSTVWDP--VRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503 (721)
Q Consensus 438 ~~~l~v~d~~~--g~~~~l~-~~--------~~~~~~~sp--dg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 503 (721)
.+.|+++|+++ ++.+.+. .+ ....+.+.+ ||+ +|+++... .....+.|++++.++. ..
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~~~~----~~ 153 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEK----SL 153 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTT----EE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEECCCC----EE
Confidence 56799999973 4455554 22 233455544 566 45555422 2457899999998764 33
Q ss_pred EEccc---CC-CCCcceEEccCCCEEEEEEee---------------CCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971 504 RRLTT---NG-KNNAFPSVSPDGKWIVFRSTR---------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564 (721)
Q Consensus 504 ~~l~~---~~-~~~~~~~~SpDg~~l~~~s~~---------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~ 564 (721)
..+.. .. .......+.++|+..+ .+.. .....||++|.. + ++.+..+-...+.++
T Consensus 154 ~~~~~~~g~~~~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---~~~~~~~l~~pNGia 227 (355)
T 3sre_A 154 LHLKTIRHKLLPSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---VRVVAEGFDFANGIN 227 (355)
T ss_dssp EEEEEECCTTCSSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---CEEEEEEESSEEEEE
T ss_pred EEEeccccCCCCCCceEEEeCCCCEEe-cCCcEeCCcccccchhhccCCccEEEEEECC--e---EEEeecCCcccCcce
Confidence 33322 11 3455678999997443 3321 124689999873 4 444444334457899
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCC-CceE--EeeecCCCCCcCCeEECC-CCCEEE
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLR--KLIQSGSAGRANHPYFSP-DGKSIV 623 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~--~l~~~~~~~~~~~~~~Sp-DG~~l~ 623 (721)
|||||+.|+++.... ..|++|+++. ++.. ++.. ..+....++..+ +|...+
T Consensus 228 ~spDg~~lYvadt~~------~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 228 ISPDGKYVYIAELLA------HKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp ECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEEeCCC------CeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEE
Confidence 999999999988653 3799998863 3332 2332 345567789999 588544
No 281
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.71 E-value=0.0017 Score=62.05 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=98.1
Q ss_pred cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEE
Q 004971 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF 254 (721)
Q Consensus 175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~ 254 (721)
+++.|+.+....+. ..|..+|+++|+..+-.+.+...+...+.++|++|....... ..++++
T Consensus 29 ~~~~LyestG~~g~-------S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----------~~v~v~ 90 (243)
T 3mbr_X 29 LRGHLYESTGETGR-------SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----------HEGFVY 90 (243)
T ss_dssp ETTEEEEEECCTTS-------CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----------SEEEEE
T ss_pred ECCEEEEECCCCCC-------ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----------CEEEEE
Confidence 56666665444332 389999999998765434333333334566788887765333 589999
Q ss_pred EcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEE--eCCCCCcc---cCceeec
Q 004971 255 LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR--VTPPGLHA---FTPATSP 329 (721)
Q Consensus 255 d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~sp 329 (721)
|.++.+...-....+.......|++.+|. ++ +.-.|+ +.++.+.. .... +...+..+ ..+.+.
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~v--Sd--gs~~l~-~iDp~t~~------~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALTSDDSHLYM--SD--GTAVIR-KLDPDTLQ------QVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSCEEE--EC--SSSEEE-EECTTTCC------EEEEEECEETTEECCCEEEEEEE-
T ss_pred ECCcCcEEEEEeCCCCceEEeeCCCEEEE--EC--CCCeEE-EEeCCCCe------EEEEEEEccCCcccccceeeEEe-
Confidence 99998866544333333344566654442 33 334566 33344331 1122 22222111 223331
Q ss_pred CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----------CCCcccCcEEcCCCCEEEEEE
Q 004971 330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----------PKTHHLNPFISPDSSRVGYHK 388 (721)
Q Consensus 330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----------~~~~~~~~~~Spdg~~l~~~~ 388 (721)
+| +|+. ..- . ...|.++|+++|+......... ...-..+++++|++++|+.+.
T Consensus 159 -~G-~lya-nvw-~--s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 -NG-ELLA-NVW-L--TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp -TT-EEEE-EET-T--TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred -CC-EEEE-EEC-C--CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 45 4553 332 1 2259999999998654432211 112345689999999988754
No 282
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.69 E-value=0.0028 Score=65.22 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=97.5
Q ss_pred CceeCcC---CCEEEEEe--C-----CcEEEEECCCCc---eEEEe---e------cCceeeEEcCCCCeEEEEecCCC-
Q 004971 423 FPSFSPK---GDRIAFVE--F-----PGVYVVNSDGSN---RRQVY---F------KNAFSTVWDPVREAVVYTSGGPE- 479 (721)
Q Consensus 423 ~~~~SpD---G~~la~~~--~-----~~l~v~d~~~g~---~~~l~---~------~~~~~~~~spdg~~la~~~~~~~- 479 (721)
.++++|| +.+|++.. . ..|..++.+++. .+.+. . .....++|+||| +|+++.....
T Consensus 79 gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~ 157 (352)
T 2ism_A 79 GLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYE 157 (352)
T ss_dssp EEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTC
T ss_pred eEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCC
Confidence 4689998 66776663 2 679999987653 22222 1 123579999999 5666642110
Q ss_pred C----CCCCCcEEEEEEEccCCCCc---------cceEEcccCCCCCcceEEccCCCEEEEEEeeCCc------eeEEEE
Q 004971 480 F----ASESSEVDIISINVDDVDGV---------SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY------KNLYIM 540 (721)
Q Consensus 480 ~----~~~~~~~~i~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~------~~l~~~ 540 (721)
. ......-.|++++.++.-.. ...+.+...-.....++|+|+...|++....... ..|.++
T Consensus 158 ~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i 237 (352)
T 2ism_A 158 RELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI 237 (352)
T ss_dssp GGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE
T ss_pred CccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe
Confidence 0 00122357888887652000 0111222222346678999954456665542221 246665
Q ss_pred ECCCC--------------cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-------eE
Q 004971 541 DAEGG--------------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-------LR 599 (721)
Q Consensus 541 d~~~g--------------~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-------~~ 599 (721)
..... ....+..+.. ......++| .+|+ |+++.... ..|+++++++.. ..
T Consensus 238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ap~G~~~-~~G~-l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~ 308 (352)
T 2ism_A 238 VPGGNYGWPRVVGRGNDPRYRDPLYFWPQ-GFPPGNLAF-FRGD-LYVAGLRG------QALLRLVLEGERGRWRVLRVE 308 (352)
T ss_dssp CTTCBCCTTTCCSCCCCTTSCCCSEECTT-CCCEEEEEE-ETTE-EEEEETTT------TEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCcCCCCcccCCCCCCCCcCCeEecCC-CCCCcceEE-ECCE-EEEEECCC------CEEEEEEECCCCcceeecchh
Confidence 43210 0000111111 112244566 3554 55555432 378888776443 12
Q ss_pred EeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971 600 KLIQSGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
.+.. .......+++.|||.. +++..
T Consensus 309 ~~~~--~~~rp~~v~~~pdG~l-yv~~~ 333 (352)
T 2ism_A 309 TALS--GFGRLREVQVGPDGAL-YVTTS 333 (352)
T ss_dssp EEEE--SSCCEEEEEECTTSCE-EEEEC
T ss_pred eecc--cCCCeeEEEECCCCcE-EEEEe
Confidence 2222 2356678999999964 44443
No 283
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.67 E-value=0.031 Score=63.11 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=41.7
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccC
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQN 664 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~ 664 (721)
..|+.||+.+|+..--... ........++..|..|++.+ .++ .|+++|.++|++. ++.-.
T Consensus 455 g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt-~dg----------------~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGS-ADG----------------RVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEECS
T ss_pred eeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEEC-CCC----------------cEEEEECCCCccceeeeCC
Confidence 5799999999975533332 22233346666777666543 332 4999999988764 44433
Q ss_pred CCCCCC-ceecC
Q 004971 665 SFEDGT-PAWGP 675 (721)
Q Consensus 665 ~~~~~~-~~~sp 675 (721)
.+.... ..|+.
T Consensus 516 ~~~~~~p~ty~~ 527 (689)
T 1yiq_A 516 SGVMAAPVTYSV 527 (689)
T ss_dssp SCCCSCCEEEEE
T ss_pred CCcccCceEEEE
Confidence 333333 35544
No 284
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.66 E-value=0.089 Score=57.81 Aligned_cols=58 Identities=5% Similarity=-0.076 Sum_probs=34.6
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT 662 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt 662 (721)
..|+.+|+.+++.+--... ........+...+..|++.+ .++ .|+++|+++|++. ++.
T Consensus 444 g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~-~dg----------------~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYAT-LDG----------------YLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEc-CCC----------------eEEEEECCCCCEEEEEe
Confidence 5899999998876433222 12222333344456666543 332 5999999888765 443
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.66 E-value=0.0012 Score=70.04 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=97.1
Q ss_pred CceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC--C
Q 004971 458 NAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--G 533 (721)
Q Consensus 458 ~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g 533 (721)
....++|+|+ +..|+++.. . ..|+.++..++ .+..+.........+++++||+ |+++.... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~-------~--~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~ 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ-------R--DAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDT 205 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB-------T--SCEEEEETTTT----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTT
T ss_pred CCceEEEccccCCCEEEEEeC-------C--CCEEEEECCCC----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcc
Confidence 3456777774 556666531 1 45667776443 5555544444577899999999 77665421 1
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-EEeeecCCCCCcCC
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANH 612 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 612 (721)
...++.++..++... ...+.. ......++++|++..|+++.... ..|++++.++++. +.+...........
T Consensus 206 ~~gv~~~~~~~~~~~-~~~~~~-~~~P~giavd~~~G~lyv~d~~~------~~V~~~d~~~g~~~~~~~~~~~~~~~~~ 277 (433)
T 4hw6_A 206 NTGIYLFTRASGFTE-RLSLCN-ARGAKTCAVHPQNGKIYYTRYHH------AMISSYDPATGTLTEEEVMMDTKGSNFH 277 (433)
T ss_dssp SEEEEEECGGGTTCC-EEEEEE-CSSBCCCEECTTTCCEEECBTTC------SEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred cceEEEEECCCCeec-cccccc-cCCCCEEEEeCCCCeEEEEECCC------CEEEEEECCCCeEEEEEeccCCCCCccc
Confidence 234666665443210 112221 12236789999555677776542 3799999987776 44443322222335
Q ss_pred eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655 (721)
Q Consensus 613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 655 (721)
++|+|||++|+++..... .|++++.++
T Consensus 278 ia~dpdG~~LYvad~~~~----------------~I~~~~~d~ 304 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKH----------------CIYRVDYNR 304 (433)
T ss_dssp EEECTTSSEEEEEETTTT----------------EEEEEEBCT
T ss_pred EEEeCCCCEEEEEeCCCC----------------EEEEEeCCC
Confidence 999999999988776543 499988763
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.64 E-value=0.12 Score=56.77 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=46.2
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..|+.+|+.+|+. +-+..... ....-..+..|..|++...++ .|+.+|.++|+..--...+......-+.
T Consensus 453 G~l~A~D~~tG~~--~W~~~~~~-~~~~g~~~tagg~vf~gt~dg-------~l~A~D~~tG~~lW~~~l~~g~~~~P~~ 522 (599)
T 1w6s_A 453 GQIKAYNAITGDY--KWEKMERF-AVWGGTMATAGDLVFYGTLDG-------YLKARDSDTGDLLWKFKIPSGAIGYPMT 522 (599)
T ss_dssp EEEEEECTTTCCE--EEEEEESS-CCCSBCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CeEEEEECCCCCE--EeEecCCC-CccCcceEecCCEEEEECCCC-------eEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence 5788999998884 22222111 111122334566666665553 8999999999865333322222233456
Q ss_pred ECCCCCEEEEEE
Q 004971 615 FSPDGKSIVFTS 626 (721)
Q Consensus 615 ~SpDG~~l~~~~ 626 (721)
|..||+..+...
T Consensus 523 y~~~G~qyv~~~ 534 (599)
T 1w6s_A 523 YTHKGTQYVAIY 534 (599)
T ss_dssp EEETTEEEEEEE
T ss_pred EEeCCEEEEEEE
Confidence 778997544433
No 287
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.59 E-value=0.0079 Score=61.83 Aligned_cols=195 Identities=14% Similarity=0.170 Sum_probs=100.1
Q ss_pred CceeCcC---CCEEEEEe-C--------CcEEEEECCCC--c---eEEEe---e----cCceeeEEcCCCCeEEEEecCC
Q 004971 423 FPSFSPK---GDRIAFVE-F--------PGVYVVNSDGS--N---RRQVY---F----KNAFSTVWDPVREAVVYTSGGP 478 (721)
Q Consensus 423 ~~~~SpD---G~~la~~~-~--------~~l~v~d~~~g--~---~~~l~---~----~~~~~~~~spdg~~la~~~~~~ 478 (721)
.++++|| +.+|++.. . ..|..++.+++ . .+.+. . .....+.|.|||. |+++....
T Consensus 77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~ 155 (354)
T 3a9g_A 77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDA 155 (354)
T ss_dssp EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCT
T ss_pred eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 4689998 55666652 2 67888988765 1 22222 1 1345799999995 66653211
Q ss_pred -CC----CCCCCcEEEEEEEccCCCCcc----ceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeEEEEECCC----
Q 004971 479 -EF----ASESSEVDIISINVDDVDGVS----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEG---- 544 (721)
Q Consensus 479 -~~----~~~~~~~~i~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~---- 544 (721)
.. ......-.|++++.++.-... ..+.+...-.....++|+|+...|++..... ....|.++....
T Consensus 156 ~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGw 235 (354)
T 3a9g_A 156 ADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGW 235 (354)
T ss_dssp TCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCT
T ss_pred CCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCC
Confidence 00 001223478888876530000 1122333333567789999544466655432 223566654311
Q ss_pred ----C------cccceEECcCCCcCceeeEE-------ccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceE---Eeee
Q 004971 545 ----G------EGYGLHRLTEGPWSDTMCNW-------SPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLR---KLIQ 603 (721)
Q Consensus 545 ----g------~~~~~~~l~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~---~l~~ 603 (721)
+ ....+..+.........++| ..+| .|+++.... ..|+++++++. +.. .+..
T Consensus 236 p~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 236 PLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRG------SMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp TTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTT------TEEEEEEECGGGCEEEEEEECT
T ss_pred CcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCC------CEEEEEEECCCCcccceeeecc
Confidence 0 00011122111122345666 2466 455555432 37888888753 332 2221
Q ss_pred cCCCCCcCCeEECCCCCEEEEEEe
Q 004971 604 SGSAGRANHPYFSPDGKSIVFTSD 627 (721)
Q Consensus 604 ~~~~~~~~~~~~SpDG~~l~~~~~ 627 (721)
........+++.|||. |+++..
T Consensus 309 -~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 309 -NVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp -TTSCCEEEEEECTTSC-EEEEEC
T ss_pred -CCCCCeeEEEECCCCc-EEEEEe
Confidence 1234567899999996 555554
No 288
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.58 E-value=0.0008 Score=69.64 Aligned_cols=169 Identities=7% Similarity=-0.003 Sum_probs=105.7
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC-----CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD-----VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT 532 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~ 532 (721)
.+..+++++....++.++ ...+.+|..+.-. ............... +.+++| |+++|++. .
T Consensus 39 ~~nlLais~~~gll~a~~--------~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~-- 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAAS--------GSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T-- 104 (388)
T ss_dssp CCBCEEEETTTTEEEEEE--------TTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E--
T ss_pred cccEEEEcCCCCEEEEeC--------CCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c--
Confidence 466788888888887765 2456666543211 000001111222344 788999 99999988 3
Q ss_pred CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971 533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612 (721)
Q Consensus 533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 612 (721)
+..|.+||+.+-.. ...+......+..+.+.+. .++....++ .|++||+..+....+. ..+.+
T Consensus 105 -~~~l~v~dv~sl~~--~~~~~~~~~~v~~i~~~~p--~~av~~~dG-------~L~v~dl~~~~~~~~~-----~~Vs~ 167 (388)
T 1xip_A 105 -RNALYSLDLEELSE--FRTVTSFEKPVFQLKNVNN--TLVILNSVN-------DLSALDLRTKSTKQLA-----QNVTS 167 (388)
T ss_dssp -SSEEEEEESSSTTC--EEEEEECSSCEEEEEECSS--EEEEEETTS-------EEEEEETTTCCEEEEE-----ESEEE
T ss_pred -CCcEEEEEchhhhc--cCccceeecceeeEEecCC--CEEEEECCC-------CEEEEEccCCcccccc-----CCceE
Confidence 56899999876542 2222222333455566544 377777665 8999999988765542 35789
Q ss_pred eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC---eEEec------c---CCCCCCCceecCC
Q 004971 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD---LKRLT------Q---NSFEDGTPAWGPR 676 (721)
Q Consensus 613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~lt------~---~~~~~~~~~~sp~ 676 (721)
++|||+| +++...++ .+.+|+.++++ .+.|. + +...+.+..|.++
T Consensus 168 v~WSpkG--~~vg~~dg-----------------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 168 FDVTNSQ--LAVLLKDR-----------------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp EEECSSE--EEEEETTS-----------------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred EEEcCCc--eEEEEcCC-----------------cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 9999999 45555443 38888888887 34562 1 3445667888875
No 289
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.22 Score=57.19 Aligned_cols=188 Identities=7% Similarity=0.015 Sum_probs=107.5
Q ss_pred eeCcCCCEEEEEe-CCcEEEEECCCCceEEEee-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971 425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD 498 (721)
Q Consensus 425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 498 (721)
...++|+ |.+.. ...|+.++..+++.+.+.. ..+..+...++|+ |++.+ . . -|+.++..+.
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt-------~-~--Gl~~~~~~~~- 479 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT-------H-A--GVFVIDLASK- 479 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE-------T-T--EEEEEESSSS-
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE-------C-C--ceEEEeCCCC-
Confidence 3345564 44443 4689999988877665541 2345555566664 44443 1 2 3555555432
Q ss_pred CccceEEcccC------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEEccC
Q 004971 499 GVSAVRRLTTN------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNWSPD 568 (721)
Q Consensus 499 ~~~~~~~l~~~------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~SpD 568 (721)
....+... ...+..+...++|+ |.+... ...|+++|.++++ ...+... ...+..+..+++
T Consensus 480 ---~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~---~~Gl~~~~~~~~~---~~~~~~~~~l~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 480 ---KVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF---GGGVGIYTPDMQL---VRKFNQYEGFCSNTINQIYRSSK 549 (781)
T ss_dssp ---SCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES---SSCEEEECTTCCE---EEEECTTTTCSCSCEEEEEECTT
T ss_pred ---eEEecccCcccccccceeEEEEEcCCCC-EEEEEc---CCCEEEEeCCCCe---EEEccCCCCCCCCeeEEEEECCC
Confidence 22222211 12344556677776 455553 3469999998776 4444321 123456777788
Q ss_pred CCEEEEEEccCCCCCCceeE-EEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 569 GEWIAFASDRDNPGSGSFEM-YLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 569 G~~l~~~~~~~~~~~~~~~i-~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
|+ |.++... .| +++|..+++.+...... ....+..+...++|+. .+.+ ..+
T Consensus 550 g~-lWi~T~~--------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l-W~~t-~~G--------------- 603 (781)
T 3v9f_A 550 GQ-MWLATGE--------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNI-WAST-NTG--------------- 603 (781)
T ss_dssp SC-EEEEETT--------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCE-EEEC-SSC---------------
T ss_pred CC-EEEEECC--------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCE-EEEc-CCc---------------
Confidence 87 4455544 57 99999888766654321 1224566777888874 3333 332
Q ss_pred ccEEEEEcCCCCeEEecc
Q 004971 646 GEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 646 ~~l~~~d~~~~~~~~lt~ 663 (721)
|+.++.++++.+.++.
T Consensus 604 --l~~~~~~~~~~~~~~~ 619 (781)
T 3v9f_A 604 --ISCYITSKKCFYTYDH 619 (781)
T ss_dssp --EEEEETTTTEEEEECG
T ss_pred --eEEEECCCCceEEecc
Confidence 8888888877777664
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.51 E-value=0.01 Score=59.63 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=109.6
Q ss_pred eCCcEEEEECCCCceEEEeecCceeeEEcC----CCCe--EEEEecCCCCCCC--CCcEEEEEEEccCCCCccceEEccc
Q 004971 437 EFPGVYVVNSDGSNRRQVYFKNAFSTVWDP----VREA--VVYTSGGPEFASE--SSEVDIISINVDDVDGVSAVRRLTT 508 (721)
Q Consensus 437 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~sp----dg~~--la~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~ 508 (721)
....|++||+++.....+..+....+..-| .|+. +++++++ . .+++.+|.++.... .+..+..
T Consensus 48 k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~----~l~~i~~ 118 (355)
T 3amr_A 48 KKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNG----TLQSMTD 118 (355)
T ss_dssp TTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTC----CEEECSC
T ss_pred CCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCC----ceeeccc
Confidence 467899999977767777644444443333 4554 6677652 3 57889999876553 5555532
Q ss_pred ------CC-CCCcceEE--ccC-CCEEEEEEeeCCceeEEEE-ECCCCcc--cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971 509 ------NG-KNNAFPSV--SPD-GKWIVFRSTRTGYKNLYIM-DAEGGEG--YGLHRLTEGPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 509 ------~~-~~~~~~~~--SpD-g~~l~~~s~~~g~~~l~~~-d~~~g~~--~~~~~l~~~~~~~~~~~~SpDG~~l~~~ 575 (721)
.. .....+++ +|+ |+..+|.+.+++....|.+ +...|.. +.++.+..+ .....++..+...+|+++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEe
Confidence 11 45566777 774 6667888877654333322 2233321 224554443 345678899888899988
Q ss_pred EccCCCCCCceeEEEEecC--CCce-EEeeecCCC---CCcCCeEE--CCCCC-EEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971 576 SDRDNPGSGSFEMYLIHPN--GTGL-RKLIQSGSA---GRANHPYF--SPDGK-SIVFTSDYGGISAEPISTPHQYQPYG 646 (721)
Q Consensus 576 ~~~~~~~~~~~~i~~~d~~--~~~~-~~l~~~~~~---~~~~~~~~--SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 646 (721)
..+. .||+++.+ ++.. +.+...... ..+..+++ .++|+ +|+.++....
T Consensus 198 eEd~-------GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~---------------- 254 (355)
T 3amr_A 198 EEDE-------AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS---------------- 254 (355)
T ss_dssp ETTT-------EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT----------------
T ss_pred cccc-------eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC----------------
Confidence 8764 69999965 3212 222211111 23455666 67888 6665554432
Q ss_pred cEEEEEcC
Q 004971 647 EIFKIKLD 654 (721)
Q Consensus 647 ~l~~~d~~ 654 (721)
.+.+||.+
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 37778886
No 291
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.45 E-value=0.0014 Score=63.10 Aligned_cols=154 Identities=10% Similarity=0.052 Sum_probs=93.9
Q ss_pred eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971 461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540 (721)
Q Consensus 461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~ 540 (721)
.+.|+ ++.|+.++. .++. |..++..++ .....+ ... .......+++|++|+....+ ...++++
T Consensus 59 GL~~~--~~~Ly~stG------~~g~--v~~iD~~Tg---kv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~--~~~v~V~ 121 (268)
T 3nok_A 59 GLVFH--QGHFFESTG------HQGT--LRQLSLESA---QPVWME-RLG-NIFAEGLASDGERLYQLTWT--EGLLFTW 121 (268)
T ss_dssp EEEEE--TTEEEEEET------TTTE--EEECCSSCS---SCSEEE-ECT-TCCEEEEEECSSCEEEEESS--SCEEEEE
T ss_pred eEEEE--CCEEEEEcC------CCCE--EEEEECCCC---cEEeEE-CCC-CcceeEEEEeCCEEEEEEcc--CCEEEEE
Confidence 34554 567777762 3444 555555543 133344 222 33444567788999888764 5689999
Q ss_pred ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CC---CcCCeEEC
Q 004971 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AG---RANHPYFS 616 (721)
Q Consensus 541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~---~~~~~~~S 616 (721)
|.++.+. +.++.... ....+++||++|+.+... ..|+.+|.++.+...-..... .. ..+.+.|.
T Consensus 122 D~~Tl~~--~~ti~~~~---eGwGLt~Dg~~L~vSdGs-------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 122 SGMPPQR--ERTTRYSG---EGWGLCYWNGKLVRSDGG-------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp ETTTTEE--EEEEECSS---CCCCEEEETTEEEEECSS-------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ECCcCcE--EEEEeCCC---ceeEEecCCCEEEEECCC-------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 9999875 55555322 224555789988887643 389999999987655433211 11 12335666
Q ss_pred CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
||+ |+......+ .|.++|++++++...
T Consensus 190 -dG~-lyanvw~s~----------------~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 190 -NGV-IYANIWHSS----------------DVLEIDPATGTVVGV 216 (268)
T ss_dssp -TTE-EEEEETTCS----------------EEEEECTTTCBEEEE
T ss_pred -CCE-EEEEECCCC----------------eEEEEeCCCCcEEEE
Confidence 774 554333332 599999999987533
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.3 Score=56.06 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=102.1
Q ss_pred eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971 425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497 (721)
Q Consensus 425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~ 497 (721)
...++|. |.+.. ...|++++..++..+.+. ...+..+...++|+ |++.+. .--|+.++..+.
T Consensus 369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~---------~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTY---------LGNISYYNTRLK 437 (781)
T ss_dssp EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEET---------TEEEEEECSSSC
T ss_pred EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEec---------cCCEEEEcCCCC
Confidence 3445564 44443 678999988765443321 22344555555554 444431 124555655432
Q ss_pred CCccceEEcccC---CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCE
Q 004971 498 DGVSAVRRLTTN---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEW 571 (721)
Q Consensus 498 ~~~~~~~~l~~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~ 571 (721)
..+.+... ...+..+...++|+ |.+... ..|+++|..+++.......... ...+..+...++|+
T Consensus 438 ----~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~- 507 (781)
T 3v9f_A 438 ----KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR- 507 (781)
T ss_dssp ----EEEECCSTTTCCCCEEEEEECTTSE-EEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-
T ss_pred ----cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-
Confidence 44444321 12344455555554 555552 4699999988763222211100 12356677788887
Q ss_pred EEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE-
Q 004971 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI- 648 (721)
Q Consensus 572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l- 648 (721)
|.++.... .|+++|.++++.+...... ....+..+...++|+.. +.+. .+ |
T Consensus 508 lWigt~~~-------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-i~T~-~G-----------------lv 561 (781)
T 3v9f_A 508 FWIGTFGG-------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW-LATG-EG-----------------LV 561 (781)
T ss_dssp EEEEESSS-------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE-EEET-TE-----------------EE
T ss_pred EEEEEcCC-------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE-EEEC-CC-----------------ce
Confidence 44455432 5999999887666554210 12234566677788743 3333 32 5
Q ss_pred EEEEcCCCCeEEecc
Q 004971 649 FKIKLDGSDLKRLTQ 663 (721)
Q Consensus 649 ~~~d~~~~~~~~lt~ 663 (721)
+++|.++++.+.++.
T Consensus 562 ~~~d~~~~~~~~~~~ 576 (781)
T 3v9f_A 562 CFPSARNFDYQVFQR 576 (781)
T ss_dssp EESCTTTCCCEEECG
T ss_pred EEECCCCCcEEEccc
Confidence 677766666555543
No 293
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.43 E-value=0.00017 Score=75.15 Aligned_cols=182 Identities=10% Similarity=0.047 Sum_probs=82.9
Q ss_pred CCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971 429 KGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL 506 (721)
Q Consensus 429 DG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 506 (721)
++..|++.. ++.|+.||..+|+...-. .+.+....+..+++.++..+ .++.+..|+..... ....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~tG~-----~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKNNE-----GLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECT-------TTCCEEEC-----C-----CSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeC-------CCCEEEEEECCCCc-----eeeee
Confidence 355676664 678999999988865433 23333333455665554432 34555555543322 22233
Q ss_pred ccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971 507 TTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584 (721)
Q Consensus 507 ~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 584 (721)
.... .....+.++. +..|++.+. +..|+.+|..+|+. +..+..+. ...++|++..|+++..+.
T Consensus 76 ~~~~~~~~~~sp~~~~-~~~v~~g~~---dg~v~a~D~~tG~~--~w~~~~~~----~~~~~p~~~~v~~~~~dg----- 140 (369)
T 2hz6_A 76 PFTIPELVQASPCRSS-DGILYMGKK---QDIWYVIDLLTGEK--QQTLSSAF----ADSLSPSTSLLYLGRTEY----- 140 (369)
T ss_dssp SCCHHHHHTTCSCC------CCCCEE---EEEEEEECCC----------------------------EEEEEEEE-----
T ss_pred eccCccccccCceEec-CCEEEEEeC---CCEEEEEECCCCcE--EEEecCCC----cccccccCCEEEEEecCC-----
Confidence 2211 0112333333 445665554 57899999999984 22222221 235677888888887664
Q ss_pred ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
.|+.||..+|+..--... .....+.+++++ ..+++.+.++ .|+++|+++|+..
T Consensus 141 --~v~a~d~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~v~~~~~dg-----------------~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 141 --TITMYDTKTRELRWNATY---FDYAASLPEDDVDYKMSHFVSNGDG-----------------LVVTVDSESGDVL 196 (369)
T ss_dssp --EEECCCSSSSSCCCEEEE---EEECCBCCCCCTTCCCCEEEEETSC-----------------EEEEECTTTCCEE
T ss_pred --EEEEEECCCCCEEEeEec---ccccCccccCCccccceEEEECCCC-----------------EEEEEECCCCcEE
Confidence 899999988864321111 112345555543 3455544332 4899998877654
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.39 E-value=0.031 Score=57.32 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=116.2
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc---cCCCCcccCcEEcCC---CCEEEEEEee-CCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF---VSPKTHHLNPFISPD---SSRVGYHKCR-GGS 393 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~---~~~~~~~~~~~~Spd---g~~l~~~~~~-~~~ 393 (721)
....++|.| ||+ |++. ... ..|+++|. +++ +.+... .........++++|| +..|++.... ...
T Consensus 30 ~P~~ia~~p-dG~-l~V~-e~~----g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 30 VPWSIAPLG-GGR-YLVT-ERP----GRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CEEEEEEEE-TTE-EEEE-ETT----TEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCeEEEEcC-CCe-EEEE-eCC----CEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 346788999 997 4443 332 45888874 454 333221 111234567899998 6777765442 110
Q ss_pred CCCCCcceeEEEeccCCC------Ccc-eecc----cCCCCceeCcCCCEEEEE-e--------------CCcEEEEECC
Q 004971 394 TREDGNNQLLLENIKSPL------PDI-SLFR----FDGSFPSFSPKGDRIAFV-E--------------FPGVYVVNSD 447 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~------~~~-~~~~----~~~~~~~~SpDG~~la~~-~--------------~~~l~v~d~~ 447 (721)
.. ...+|...+..... +.+ ...+ .....++|.|||. |++. + .+.|+.++.+
T Consensus 101 ~~--~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 101 GH--IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp GC--EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred CC--cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 00 00234444433220 001 1111 1234589999995 5555 1 1468888887
Q ss_pred CC--------ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-------------cceE
Q 004971 448 GS--------NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-------------SAVR 504 (721)
Q Consensus 448 ~g--------~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~ 504 (721)
+. ....+. -.....++|+|+...|+++..+. +..-+|..+...+.-.. ....
T Consensus 178 G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~-----~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGP-----VGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCS-----SSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCC-----CCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence 64 222222 23566899999655677665432 11123333332210000 0111
Q ss_pred EcccCCCCCcceEE-------ccCCCEEEEEEeeCCceeEEEEECCCC-cccceEECcC-CCcCceeeEEccCCCEEEEE
Q 004971 505 RLTTNGKNNAFPSV-------SPDGKWIVFRSTRTGYKNLYIMDAEGG-EGYGLHRLTE-GPWSDTMCNWSPDGEWIAFA 575 (721)
Q Consensus 505 ~l~~~~~~~~~~~~-------SpDg~~l~~~s~~~g~~~l~~~d~~~g-~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~ 575 (721)
.+.........++| ..+|+ |++.... ..+|++++++.. +......+.. .......+++.|||. |+++
T Consensus 253 ~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~ 328 (354)
T 3a9g_A 253 DTGSETWAPSGASFVHGDMFPGLRGW-LLIACLR--GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILIS 328 (354)
T ss_dssp ECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETT--TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEE
T ss_pred ecCCCCcCCcceEEECCCCCcccCCc-EEEEEcC--CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEE
Confidence 11011112333445 24563 4444432 457888888753 3211223332 234567899999995 6666
Q ss_pred Ec
Q 004971 576 SD 577 (721)
Q Consensus 576 ~~ 577 (721)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.37 E-value=0.24 Score=54.46 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=31.2
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
..|+.+|+.+|+..=-... ......-..+..|..|++. ..++ .|+.+|.++|++.
T Consensus 453 G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagg~vf~g-t~dg----------------~l~A~D~~tG~~l 507 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYG-TLDG----------------YLKARDSDTGDLL 507 (599)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEE-CTTS----------------EEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEEeEecC--CCCccCcceEecCCEEEEE-CCCC----------------eEEEEECCCCCEE
Confidence 5788999988875422221 1111111233345555553 3332 5999999988764
No 296
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.21 E-value=0.044 Score=56.21 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=76.8
Q ss_pred ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eeecc----cCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971 322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRF----VSPKTHHLNPFISPD---SSRVGYHKCRGGS 393 (721)
Q Consensus 322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~----~~~~~~~~~~~~Spd---g~~l~~~~~~~~~ 393 (721)
...++|.| ||++|++. ... ..|++++.. ++.. .+... .........++++|| +.+|++.......
T Consensus 20 P~~i~~~p-dG~~l~V~-e~~----G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 20 PWALAFLP-DNHGMLIT-LRG----GELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp EEEEEECS-TTCCEEEE-ETT----TEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred cEEEEEcC-CCCEEEEE-eCC----ceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 35788999 99855443 332 358888864 3321 12111 011223457899997 6777765433210
Q ss_pred CCCCCcceeEEEeccCCCC-----c-c-eecc------cCCCCceeCcCCCEEEEEe-C--------------CcEEEEE
Q 004971 394 TREDGNNQLLLENIKSPLP-----D-I-SLFR------FDGSFPSFSPKGDRIAFVE-F--------------PGVYVVN 445 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~-----~-~-~~~~------~~~~~~~~SpDG~~la~~~-~--------------~~l~v~d 445 (721)
... ...++...++..... + + ...+ .....++|+||| +|++.. + +.|+.++
T Consensus 93 ~g~-~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 93 DGK-AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSC-EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCC-ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 000 002344444332210 0 0 1111 123468999999 666662 1 3689999
Q ss_pred CCCC-------------ceEEEe--ecCceeeEEcCCCCeEEEEec
Q 004971 446 SDGS-------------NRRQVY--FKNAFSTVWDPVREAVVYTSG 476 (721)
Q Consensus 446 ~~~g-------------~~~~l~--~~~~~~~~~spdg~~la~~~~ 476 (721)
.++. ...... -.....++|.|+...|+++..
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 8865 222222 234667899996556777654
No 297
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=97.15 E-value=0.11 Score=58.24 Aligned_cols=255 Identities=9% Similarity=-0.023 Sum_probs=141.1
Q ss_pred CcE-EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC---CcceecccCC--------CCceeCcCCCEEEEEe----
Q 004971 374 NPF-ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL---PDISLFRFDG--------SFPSFSPKGDRIAFVE---- 437 (721)
Q Consensus 374 ~~~-~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~--------~~~~~SpDG~~la~~~---- 437 (721)
+.. ++||++++++.-..++... ..+...++.++. ..+. ..... ..++|- |+..+++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~----~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDE----MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHK 206 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSE----EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCST
T ss_pred ceeecCCCCCEEEEEeCCCCCce----eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCC
Confidence 344 8999999999877776431 456667776551 1111 11111 334886 445565541
Q ss_pred --------CCcEEEEECCCCc--eEEEeec----CceeeEEcCCCCe----EEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 438 --------FPGVYVVNSDGSN--RRQVYFK----NAFSTVWDPVREA----VVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 438 --------~~~l~v~d~~~g~--~~~l~~~----~~~~~~~spdg~~----la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
...++.+.+-+.. -+.++.+ .......++|+++ +++... .......+|.++.+..
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~-- 279 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-----KDFYNYDNYILDTKYK-- 279 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-----SSSSCEEEEEEECSSS--
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-----cccCceeEEEEcCCCC--
Confidence 2458888876543 3445521 1224556778874 333321 1223467777765421
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEee-------CCceeEEEEECCCCcc-----cceEE-CcCC-CcCceeeEE
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-------TGYKNLYIMDAEGGEG-----YGLHR-LTEG-PWSDTMCNW 565 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~-------~g~~~l~~~d~~~g~~-----~~~~~-l~~~-~~~~~~~~~ 565 (721)
.++..+|.... ...+..+++++.++..... -...+|+.+|++++.. ...+. ++.. ...+..+.|
T Consensus 280 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (711)
T 4hvt_A 280 NLKLQKINMPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIST 357 (711)
T ss_dssp SCEEEECCSCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEE
T ss_pred CCcceEeecCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEE
Confidence 01445553322 2234566666544433211 1355799999876421 11333 3332 334556777
Q ss_pred ccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEE-eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCC
Q 004971 566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRK-LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY 642 (721)
Q Consensus 566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~-l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 642 (721)
..| +|++...+. +...|+++++.+++ .+. +... ..+.+.....++++..+++.......
T Consensus 358 ~~~--~l~~~~~~~----~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~----------- 419 (711)
T 4hvt_A 358 TKD--RVFLATYDN----VVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIV----------- 419 (711)
T ss_dssp CSS--CEEEEEEET----TEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSS-----------
T ss_pred ECC--EEEEEEEEC----CEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCC-----------
Confidence 765 566666553 67789999987763 344 3221 12344455667888877776654433
Q ss_pred CCCccEEEEEcCCCCeEEeccC
Q 004971 643 QPYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 643 ~~~~~l~~~d~~~~~~~~lt~~ 664 (721)
++.+|.+|+. ++.+.|+..
T Consensus 420 --P~~~~~~d~~-~~~~~l~~~ 438 (711)
T 4hvt_A 420 --PPTIYLWVKT-HELKIIRKA 438 (711)
T ss_dssp --CCEEEEECTT-SCEEEEECC
T ss_pred --CCEEEEEeCC-CcEEEEecC
Confidence 3579999988 777777763
No 298
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.13 E-value=0.018 Score=58.42 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=92.5
Q ss_pred EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc----CCCcCceeeEEccC---CCEEEEEE
Q 004971 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT----EGPWSDTMCNWSPD---GEWIAFAS 576 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~----~~~~~~~~~~~SpD---G~~l~~~~ 576 (721)
+.+...-.....++|.|||+.++.... ..+|++++.++++...+..+. .+......++++|| +.+|++..
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~---~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRD---EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEec---CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 344444456778999999984443321 457999987766632233232 23444578999996 56777664
Q ss_pred ccCCCCCCceeEEEEecCCC--------ceEEeee-cC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971 577 DRDNPGSGSFEMYLIHPNGT--------GLRKLIQ-SG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY 645 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~--------~~~~l~~-~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (721)
... ....|.++..+.+ +.+.+.. .. .......+.|.|||+ |+++..+.+...... ..-...
T Consensus 102 t~~----~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~q---d~~~~~ 173 (347)
T 3das_A 102 TSA----SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQ---DRKSLG 173 (347)
T ss_dssp ECS----SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTT---CTTCST
T ss_pred ecC----CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCcccc---CCCCCC
Confidence 432 2357999987652 2233322 11 122345699999996 565544433211000 001234
Q ss_pred ccEEEEEcCCC--------CeEEeccCCCCCCCceecCC-cCCccc
Q 004971 646 GEIFKIKLDGS--------DLKRLTQNSFEDGTPAWGPR-FIRPVD 682 (721)
Q Consensus 646 ~~l~~~d~~~~--------~~~~lt~~~~~~~~~~~sp~-~l~~~~ 682 (721)
+.|++++.+++ ........-......+|.|. .|+..+
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 57999998876 22222222223456788875 344433
No 299
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.08 E-value=0.58 Score=52.39 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=47.7
Q ss_pred eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY 614 (721)
Q Consensus 535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 614 (721)
..|+.||+.+|+. +-+...+. ......++..|..|++...++ .|+.+|..+|+..-....+.......+.
T Consensus 438 g~l~A~D~~tG~~--~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg-------~l~a~d~~tG~~l~~~~~~~~~~~~p~~ 507 (668)
T 1kv9_A 438 GALLAWDPVKQKA--AWKVPYPT-HWNGGTLSTAGNLVFQGTAAG-------QMHAYSADKGEALWQFEAQSGIVAAPMT 507 (668)
T ss_dssp EEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred ceEEEEeCCCCcE--EEEccCCC-CCcCceeEeCCCEEEEECCcc-------cchhhhhhcChhheEecCCCCcccCceE
Confidence 6799999999984 22222221 123345566777777775553 8999999999866444332222223455
Q ss_pred ECCCCCEE
Q 004971 615 FSPDGKSI 622 (721)
Q Consensus 615 ~SpDG~~l 622 (721)
+..||+..
T Consensus 508 ~~~~G~~y 515 (668)
T 1kv9_A 508 FELAGRQY 515 (668)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 66788743
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.07 E-value=0.13 Score=51.31 Aligned_cols=164 Identities=9% Similarity=-0.024 Sum_probs=100.3
Q ss_pred CCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ec---------CceeeEE---cCCCCeEEEEecCCCCCCC--
Q 004971 421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FK---------NAFSTVW---DPVREAVVYTSGGPEFASE-- 483 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~---------~~~~~~~---spdg~~la~~~~~~~~~~~-- 483 (721)
...+.|.+...++++.+ .+.|..|+..++....+. .+ .+..+.| .|+|+.+++...+..+...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 44579988777787775 789999999877654544 22 1357889 6886665544323223221
Q ss_pred --CCcEEEEEEEcc---CCCCccceEEccc---C-------C-CCCcceEEccCCCEEEEEEeeCCc-eeEEEEECCCCc
Q 004971 484 --SSEVDIISINVD---DVDGVSAVRRLTT---N-------G-KNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGE 546 (721)
Q Consensus 484 --~~~~~i~~~~~~---~~~~~~~~~~l~~---~-------~-~~~~~~~~SpDg~~l~~~s~~~g~-~~l~~~d~~~g~ 546 (721)
.+...|..+++. ++ .......|.. . . .....++..++|+..+..+. . ..|++++.++..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---GMPAIARVSADGKT 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---SSCEEEEECTTSCC
T ss_pred ccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---CCCeEEEEeCCCCE
Confidence 235667777766 22 0011122221 1 1 13456889999996665554 4 779999998654
Q ss_pred ccceEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971 547 GYGLHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596 (721)
Q Consensus 547 ~~~~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~ 596 (721)
.. ...+... ....+.+++.|||+.|+.....+ .|+.+|+...
T Consensus 171 ~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g-------~L~~fD~~~p 216 (334)
T 2p9w_A 171 VS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR-------ALTAFDVSKP 216 (334)
T ss_dssp EE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS-------SEEEEECSSS
T ss_pred Ee-eeeecCCCcccccCcceEEEeCCCCEEEEEcCCC-------eEEEEcCCCC
Confidence 21 1111111 11246899999999888887643 8999998843
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.05 E-value=0.01 Score=60.99 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=79.6
Q ss_pred eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccC---CCEEEEEE
Q 004971 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPD---GEWIAFAS 576 (721)
Q Consensus 503 ~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpD---G~~l~~~~ 576 (721)
.+.+...-.....++|.|||+ |+++.. ...|++++ +++...+..+. .+......++|+|| +++|+++.
T Consensus 23 ~~~va~~l~~P~~ia~~pdG~-l~V~e~---~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPDGG-MLIAER---PGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp EEEEECCCSCEEEEEECTTSC-EEEEET---TTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCe-EEEEeC---CCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 334444334567889999998 544443 36899998 44432222222 22334578999999 77888776
Q ss_pred ccCCCCCCceeEEEEecCCCc---eEEeee-cC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971 577 DRDNPGSGSFEMYLIHPNGTG---LRKLIQ-SG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI 648 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (721)
..... .....|++++.++++ .+.+.. .. .......++|+|||. |+++..+.+...... ......+.|
T Consensus 97 ~~~~~-~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~---d~~~~~g~I 171 (352)
T 2ism_A 97 TVAEG-GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQ---DLASLGGKI 171 (352)
T ss_dssp EECTT-SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGG---CTTCSSSEE
T ss_pred ecCCC-CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCcccc---CCCCCceEE
Confidence 53200 012579999987652 222222 11 112346899999994 666654332210000 001123579
Q ss_pred EEEEcCC
Q 004971 649 FKIKLDG 655 (721)
Q Consensus 649 ~~~d~~~ 655 (721)
++++.++
T Consensus 172 ~ri~~dG 178 (352)
T 2ism_A 172 LRLTPEG 178 (352)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 9999887
No 302
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.03 E-value=0.12 Score=58.09 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=75.1
Q ss_pred CcceEeecCCCCCccccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec---cCCc---ceeccC
Q 004971 205 TGLTRRLTPYGVADFSPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE---NGGW---PCWVDE 277 (721)
Q Consensus 205 ~g~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~---~~~~---~~ws~d 277 (721)
.++-..+.+.+......++.| +|+.+++.........+. ......++++|+.+++-+++..- .... .++..|
T Consensus 175 ~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~-~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~ 253 (656)
T 1k3i_A 175 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGS-PGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN 253 (656)
T ss_dssp SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSC-CCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred CCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccC-CCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC
Confidence 444444444333334446777 888888865432211110 11234799999999886655422 1111 356688
Q ss_pred CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEe-cCCCCeeeEEEEEC
Q 004971 278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATR-RPTSSYRHIELFDL 354 (721)
Q Consensus 278 g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~-~~g~~~~~l~l~dl 354 (721)
|++|+..-.. ...+.+|+ +... ...++... .......++.+ ||+.+++... ..+.....+++||+
T Consensus 254 g~lyv~GG~~-~~~v~~yd---~~t~-------~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 254 GQIVVTGGND-AKKTSLYD---SSSD-------SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SCEEEECSSS-TTCEEEEE---GGGT-------EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCEEEeCCCC-CCceEEec---CcCC-------ceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 8987743222 23444553 2221 33333322 11223345667 8886666331 11112356899999
Q ss_pred CCCceEEe
Q 004971 355 VKNKFIEL 362 (721)
Q Consensus 355 ~tg~~~~l 362 (721)
.+++...+
T Consensus 322 ~t~~W~~~ 329 (656)
T 1k3i_A 322 SSKTWTSL 329 (656)
T ss_dssp TTTEEEEE
T ss_pred CCCcceeC
Confidence 98876555
No 303
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.03 E-value=0.3 Score=49.36 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=114.1
Q ss_pred cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971 321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPD---SSRVGYHKCRGGS 393 (721)
Q Consensus 321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spd---g~~l~~~~~~~~~ 393 (721)
....++|.| ||+. ++. .+ ....|++++..+++...+... .........++++|| ..+|++.-.....
T Consensus 33 ~P~~ia~~p-dG~l-lVt-er---~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 33 SPWGLAPLP-GGDL-LVS-SR---DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SEEEEEECT-TSCE-EEE-ET---TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CceEEEEcC-CCcE-EEE-Ee---cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 446788999 9974 343 33 123488888776665444321 112334567899996 4566553221111
Q ss_pred CCCCCcceeEEEeccCC--------CCcc--eecc----cCCCCceeCcCCCEEEEE-e--------------CCcEEEE
Q 004971 394 TREDGNNQLLLENIKSP--------LPDI--SLFR----FDGSFPSFSPKGDRIAFV-E--------------FPGVYVV 444 (721)
Q Consensus 394 ~~~~~~~~l~~~~~~~~--------~~~~--~~~~----~~~~~~~~SpDG~~la~~-~--------------~~~l~v~ 444 (721)
.++....+... ..+. ...+ .....+.|.|||. |++. + .+.|+.+
T Consensus 107 ------~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 107 ------NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp ------EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred ------CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEE
Confidence 34444444331 0010 1111 1234589999995 5554 2 3678888
Q ss_pred ECCCC--------ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc------------
Q 004971 445 NSDGS--------NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA------------ 502 (721)
Q Consensus 445 d~~~g--------~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 502 (721)
+.++. ...... -.....++|.|+|+ |+++..+. +..-+|..+...+.-+...
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~-----~~~deln~i~~G~nyGwP~~~g~~~~~~~~~ 253 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQ-----DTWDELNAIKPGDNYGWPEAEGKGGGSGFHD 253 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCS-----SSCEEEEEECTTCBCCTTTCCSSCCCTTCCC
T ss_pred eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCC-----CCCceeeEEcCCCEecCCcccCCCCCccccC
Confidence 88765 222222 23466899999865 55554332 2223444443322100000
Q ss_pred -eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cc-eEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 503 -VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YG-LHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 503 -~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
...+..+......++|. +| .++....+ ..+|+++.++.+.. .. ...+.........++..|||. |+++..
T Consensus 254 P~~~~~~~~~ap~G~~~~-~g-~~~~~~l~--~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~td 326 (347)
T 3das_A 254 PVAQWSTDEASPSGIAYA-EG-SVWMAGLR--GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLVTS 326 (347)
T ss_dssp CSEEECTTTCCEEEEEEE-TT-EEEEEEST--TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEEEC
T ss_pred CcEecCCCCCCCcceEEE-cC-ceeecccc--CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEEEc
Confidence 00010000111223343 23 23333332 45788887765431 11 223333335567889999996 444443
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.99 E-value=0.015 Score=59.27 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=72.9
Q ss_pred CCcceEEcc--CCC-EEEEEEeeCC--ceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEcc--CC---
Q 004971 512 NNAFPSVSP--DGK-WIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDR--DN--- 580 (721)
Q Consensus 512 ~~~~~~~Sp--Dg~-~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~--~~--- 580 (721)
....+.+.+ ||+ +|++.....+ ...|+.++..++....+..+.... ...+.+.+.++|+ ++++... ..
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCccc
Confidence 344456555 566 5555555422 336777887766533333333222 2357889999997 4444321 00
Q ss_pred ------CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 581 ------PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 581 ------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
.......||+++.. +.+.+.. .-...+.++|||||++||++..... .||+++++
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~--~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~----------------~I~~~~~~ 251 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPN--DVRVVAE--GFDFANGINISPDGKYVYIAELLAH----------------KIHVYEKH 251 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTT--CCEEEEE--EESSEEEEEECTTSSEEEEEEGGGT----------------EEEEEEEC
T ss_pred ccchhhccCCccEEEEEECC--eEEEeec--CCcccCcceECCCCCEEEEEeCCCC----------------eEEEEEEC
Confidence 00123579999873 5554443 2234678999999999999887653 49999986
Q ss_pred C
Q 004971 655 G 655 (721)
Q Consensus 655 ~ 655 (721)
.
T Consensus 252 ~ 252 (355)
T 3sre_A 252 A 252 (355)
T ss_dssp T
T ss_pred C
Confidence 3
No 305
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.97 E-value=0.64 Score=51.02 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=46.9
Q ss_pred ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP 613 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 613 (721)
...|+.||+.+|+. +-+...... .........|..|+++..++ .|+.+|.++|+..--...+.......+
T Consensus 465 ~G~l~A~D~~tG~~--~W~~~~~~~-~~~g~~~tagglvf~g~~dg-------~l~A~D~~tG~~lW~~~~~~g~~a~P~ 534 (582)
T 1flg_A 465 VGSLRAMDPVSGKV--VWEHKEHLP-LWAGVLATAGNLVFTGTGDG-------YFKAFDAKSGKELWKFQTGSGIVSPPI 534 (582)
T ss_dssp SEEEEEECTTTCCE--EEEEEESSC-CCSCCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cceEEEEECCCCCE--EEEecCCCC-CcccceEeCCCEEEEECCCC-------cEEEEECCCCCEEEEecCCCCcccCce
Confidence 46799999999984 222222211 12222233456666665553 899999999986544433222222346
Q ss_pred EECCCCCEEEEE
Q 004971 614 YFSPDGKSIVFT 625 (721)
Q Consensus 614 ~~SpDG~~l~~~ 625 (721)
.|+.||+..+..
T Consensus 535 ~y~~~G~qYv~~ 546 (582)
T 1flg_A 535 TWEQDGEQYLGV 546 (582)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEEE
Confidence 677899754443
No 306
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.93 E-value=0.73 Score=51.60 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=35.8
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT 662 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt 662 (721)
..|+.||+.+|+..=-... ........++..|..|++.+ .++ .|+++|.++++.. ++.
T Consensus 438 g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~-~dg----------------~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGT-AAG----------------QMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEEC-Ccc----------------cchhhhhhcChhheEec
Confidence 5799999999875422221 12233345556677776653 222 5999999888764 443
No 307
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.89 E-value=0.076 Score=59.61 Aligned_cols=268 Identities=9% Similarity=-0.025 Sum_probs=130.2
Q ss_pred eeEEEEECCCCceEEeecccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---cc-C-
Q 004971 347 RHIELFDLVKNKFIELTRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RF-D- 420 (721)
Q Consensus 347 ~~l~l~dl~tg~~~~l~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~-~- 420 (721)
..+++||+.+++.+.+.....+ .......++..+|+.+++..... ..+++.+.... ..... .. .
T Consensus 219 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~--------~~v~~yd~~t~--~W~~~~~~~~~R~ 288 (656)
T 1k3i_A 219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA--------KKTSLYDSSSD--SWIPGPDMQVARG 288 (656)
T ss_dssp EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST--------TCEEEEEGGGT--EEEECCCCSSCCS
T ss_pred EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC--------CceEEecCcCC--ceeECCCCCcccc
Confidence 3689999999886655432211 11122256778887666643222 24666665433 11111 00 0
Q ss_pred CCCceeCcCCCEEEEEeC-------CcEEEEECCCCceEEEee-------cCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971 421 GSFPSFSPKGDRIAFVEF-------PGVYVVNSDGSNRRQVYF-------KNAFSTVWDPVREAVVYTSGGPEFASESSE 486 (721)
Q Consensus 421 ~~~~~~SpDG~~la~~~~-------~~l~v~d~~~g~~~~l~~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 486 (721)
....+..+||+.+++.+. ..+++||..+.+...+.. .......+..+++..++.............
T Consensus 289 ~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~ 368 (656)
T 1k3i_A 289 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS 368 (656)
T ss_dssp SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence 112345578887666541 569999999887766521 000112233455554444311000000111
Q ss_pred EEEEEEEccCCCCccceEEcccCCC---------CCcceEEc-cCCCEEEEEEeeC--C---ce---eEEEEECCCCccc
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGK---------NNAFPSVS-PDGKWIVFRSTRT--G---YK---NLYIMDAEGGEGY 548 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~S-pDg~~l~~~s~~~--g---~~---~l~~~d~~~g~~~ 548 (721)
..++.++.... .....+..... ......|. .+++.+++..... + .. .|+++|..+.+-.
T Consensus 369 ~~v~~yd~~~~---~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 369 TAMNWYYTSGS---GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp SEEEEEECSTT---CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred cceeeeecCCc---ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 23333443332 11111111110 11122232 3666555554211 0 11 6888888877631
Q ss_pred ceE--ECcCCCcCceeeEEccCCCEEEEEEccCCC----CCCceeEEEEecCCCceEEeeecCCCCCcC-CeEECCCCCE
Q 004971 549 GLH--RLTEGPWSDTMCNWSPDGEWIAFASDRDNP----GSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKS 621 (721)
Q Consensus 549 ~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~~~SpDG~~ 621 (721)
.+. .+... ......+..|||+.+++....... ......+++||..+++-+.+.......... ...+.|||+.
T Consensus 446 ~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v 524 (656)
T 1k3i_A 446 VFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRV 524 (656)
T ss_dssp EECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCE
T ss_pred EEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEE
Confidence 111 11211 112345677899988877643110 011357899999888766654332222223 3457899998
Q ss_pred EEEEEec
Q 004971 622 IVFTSDY 628 (721)
Q Consensus 622 l~~~~~~ 628 (721)
+++.+..
T Consensus 525 ~v~GG~~ 531 (656)
T 1k3i_A 525 FNGGGGL 531 (656)
T ss_dssp EEEECCC
T ss_pred EecCCCC
Confidence 8887753
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.18 Score=50.03 Aligned_cols=156 Identities=6% Similarity=-0.101 Sum_probs=78.9
Q ss_pred EEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCCCcCceee
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ 563 (721)
..++.++.... ....+.... ....+.+..-+++.+++..... ....++++|+.+.+-..+..+...... ..
T Consensus 128 ~~~~~~d~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~ 201 (301)
T 2vpj_A 128 TSMERYDPNID----QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG--AG 201 (301)
T ss_dssp CEEEEEETTTT----EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CE
T ss_pred ceEEEEcCCCC----eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc--ce
Confidence 35666666543 344443332 2222333344665444443221 135799999998874222222222211 12
Q ss_pred EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 643 (721)
+..-+++.++++..... .....+++||+.+.+-..+... ...........-+++.+++.......
T Consensus 202 ~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------ 266 (301)
T 2vpj_A 202 VALLNDHIYVVGGFDGT--AHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGATVLRGRLYAIAGYDGNS------------ 266 (301)
T ss_dssp EEEETTEEEEECCBCSS--SBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBCSSS------------
T ss_pred EEEECCEEEEEeCCCCC--cccceEEEEeCCCCcEEECCCC-CCcccceeEEEECCEEEEEcCcCCCc------------
Confidence 22235554444443321 1135799999999887766533 22223333333466655544332211
Q ss_pred CCccEEEEEcCCCCeEEecc
Q 004971 644 PYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 644 ~~~~l~~~d~~~~~~~~lt~ 663 (721)
...+++++|+++.+.+.+..
T Consensus 267 ~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 267 LLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BEEEEEEEETTTTEEEEEEE
T ss_pred ccccEEEEcCCCCeEEEcCC
Confidence 12469999999988777753
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.76 E-value=0.5 Score=46.68 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=128.1
Q ss_pred CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971 332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411 (721)
Q Consensus 332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (721)
.+++..... .++..++.+.|+..+... .... .........|..+.|+.-. + ..+.+.++....
T Consensus 36 DkyicVrE~--~~~~~~VvIiDl~n~~~~-~Rrp----i~AdsAIMnP~~~ViALra---g-------~~LQiFnletK~ 98 (365)
T 2xzh_A 36 DKFICIREK--VGEQAQVVIIDMNDPSNP-IRRP----ISADSAIMNPASKVIALKA---G-------KTLQIFNIEMKS 98 (365)
T ss_dssp TTEEEEEEE--ETTEEEEEEEETTSTTSC-EEEE----CCCSEEEECSSSSEEEEEE---T-------TEEEEEETTTTE
T ss_pred CceEEEEec--CCCCCEEEEEECCCCCCc-cccc----cccceeeeCCCccEEEEec---C-------CeEEEechHHhh
Confidence 356655322 334557999999987632 1111 1122344577777777642 2 346666666542
Q ss_pred Cc-ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC-ceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 412 PD-ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS-NRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 412 ~~-~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
+- -........+-.|-. .+.|+.+....+|.|++++. .+..++ ...+..+.-++|.++++...-...-..
T Consensus 99 klks~~~~e~VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 99 KMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp EEEEEECSSCEEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred hhcceecCCccEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 11 111122333345643 34799999999999999763 466666 224567888999999998763110001
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC-----CEEEEEEeeCCceeEEEEECCCC---cc---cceE
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-----KWIVFRSTRTGYKNLYIMDAEGG---EG---YGLH 551 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-----~~l~~~s~~~g~~~l~~~d~~~g---~~---~~~~ 551 (721)
-.+...||.++.+ ..+.+..+.. ....+-.+| +.++|+.......+|.++++... .. +...
T Consensus 178 v~G~mQLYS~er~------~sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~v 249 (365)
T 2xzh_A 178 VVGAMQLYSVDRK------VSQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 249 (365)
T ss_dssp EEEEEEEEETTTT------EEEEECCSEE--EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEE
T ss_pred cceeEEEEeeccc------ccceeeeeee--eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccc
Confidence 1355666665432 3334444331 111222222 34566655433468999998432 11 1122
Q ss_pred ECcCCC----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 552 RLTEGP----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 552 ~l~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
.+...+ ...-.+..|+.=..|+.....+ .|++||+.++.+.
T Consensus 250 di~fppea~~DFPVamqvs~kygviyviTK~G-------~ihlyDleTgt~i 294 (365)
T 2xzh_A 250 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYG-------YIHLYDLETGTCI 294 (365)
T ss_dssp EECCCTTCTTCCEEEEEEETTTTEEEEEETTS-------EEEEEETTTCCEE
T ss_pred eeeCCccccCCceEEEEecccCCEEEEEeCCc-------EEEEEEcccCcEE
Confidence 222111 1123456677666666666554 8999999998654
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.76 E-value=0.052 Score=54.07 Aligned_cols=164 Identities=9% Similarity=0.070 Sum_probs=97.7
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--------CCCcceEE---ccCCCEEE
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--------KNNAFPSV---SPDGKWIV 526 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~---SpDg~~l~ 526 (721)
....+.|.+...++++.+. ..+. |+.++..++ ....+.... .....+.| .|+|+.++
T Consensus 14 yPE~~~wd~~~g~~~vs~l------~~g~--V~~~~~~~~----~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNL------YKGR--IEVYNPKTQ----SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CCSCEEEETTTTEEEEEET------TTTE--EEEECTTTC----CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CCcCccCcCCCCEEEEEec------cCCE--EEEEcCCCC----eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 4567899888888888763 2333 444444432 222221111 12356788 68876666
Q ss_pred EEEe----------eCCceeEEEEECC---CCcccceEECcC-----------CCcCceeeEEccCCCEEEEEEccCCCC
Q 004971 527 FRST----------RTGYKNLYIMDAE---GGEGYGLHRLTE-----------GPWSDTMCNWSPDGEWIAFASDRDNPG 582 (721)
Q Consensus 527 ~~s~----------~~g~~~l~~~d~~---~g~~~~~~~l~~-----------~~~~~~~~~~SpDG~~l~~~~~~~~~~ 582 (721)
+... ..+...|.++|+. +++......|.. .......++..++|+.-+..+..
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~---- 157 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG---- 157 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----
Confidence 5331 0245789999999 676422233321 11235789999999844434433
Q ss_pred CCceeEEEEecCCCceEEeeecC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971 583 SGSFEMYLIHPNGTGLRKLIQSG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 583 ~~~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 656 (721)
...|++++.++.......... .......+++.|||+.|+.... .+ +|+.+|++..
T Consensus 158 --~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g----------------~L~~fD~~~p 216 (334)
T 2p9w_A 158 --MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PR----------------ALTAFDVSKP 216 (334)
T ss_dssp --SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SS----------------SEEEEECSSS
T ss_pred --CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CC----------------eEEEEcCCCC
Confidence 027999999887544332211 1123568999999999887665 33 4999998743
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.73 E-value=0.012 Score=60.52 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=75.5
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC----cCCCcCceeeEEccC---CCEEEEEEccCCCCCC
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL----TEGPWSDTMCNWSPD---GEWIAFASDRDNPGSG 584 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l----~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~ 584 (721)
....++|.|||++|+++.. ..+|++++.++.....+..+ ..+......++|+|| +.+|+++...... .+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~---~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~-~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLR---GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD-DG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEEET---TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS-SS
T ss_pred CcEEEEEcCCCCEEEEEeC---CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC-CC
Confidence 5677899999995554443 46899998653221111111 122233467899997 7778777543100 01
Q ss_pred --ceeEEEEecCCC-----ceEEeeecCC-----CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971 585 --SFEMYLIHPNGT-----GLRKLIQSGS-----AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652 (721)
Q Consensus 585 --~~~i~~~d~~~~-----~~~~l~~~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 652 (721)
...|++++.+.+ ..+.+..... ......+.|+||| +|+++..+.+.... .. ..-...+.|++++
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~--~q-~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPT--AQ-DLDKLQGKLVRLT 170 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGG--GG-CTTSCTTEEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCc--cC-CCCCCCeEEEEEC
Confidence 357888887654 2222322111 1224579999999 67776654432100 00 0011234699999
Q ss_pred cCCC
Q 004971 653 LDGS 656 (721)
Q Consensus 653 ~~~~ 656 (721)
.+++
T Consensus 171 ~dG~ 174 (353)
T 2g8s_A 171 DQGE 174 (353)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8875
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.69 E-value=0.71 Score=47.49 Aligned_cols=235 Identities=12% Similarity=0.125 Sum_probs=130.0
Q ss_pred CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971 332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL 411 (721)
Q Consensus 332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (721)
.++|... ...++..++.+.|+..+... ... ..........|..+.|+.- . + ..+.+.++....
T Consensus 35 DkyicVr--E~~~~~~~vvIiDl~~~~~~-~rr----pi~AdsAIMnP~~~iiALr-a--g-------~~lQiFnle~K~ 97 (494)
T 1bpo_A 35 DKFICIR--EKVGEQAQVVIIDMNDPSNP-IRR----PISADSAIMNPASKVIALK-A--G-------KTLQIFNIEMKS 97 (494)
T ss_dssp TTEEEEE--ECCTTCCEEEEEETTSTTSC-EEE----ECCCSEEEECSSSSCEEEE-E--T-------TEEEEEETTTTE
T ss_pred CceEEEE--ecCCCCCeEEEEECCCCCcc-eec----ccccceeeeCCCCcEEEEe-c--C-------CeEEEEchHHhh
Confidence 3565553 22335558999999987532 111 1112234556777766664 2 2 346666665542
Q ss_pred C-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC-ceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971 412 P-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS-NRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFAS 482 (721)
Q Consensus 412 ~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~ 482 (721)
+ .-........+-.|-. .+.|+.+....+|.|++++. .+..++ ...+..+.-++|.++++.+.-...-..
T Consensus 98 klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 98 KMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp EEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred hhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 1 1111223344445543 34799999999999999763 366666 234567889999999998753110001
Q ss_pred CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC-----CEEEEEEeeCCceeEEEEECCCC---cc---cceE
Q 004971 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-----KWIVFRSTRTGYKNLYIMDAEGG---EG---YGLH 551 (721)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-----~~l~~~s~~~g~~~l~~~d~~~g---~~---~~~~ 551 (721)
-.+...||.++.. ..+.+..+.. ....+-.+| +.++|+.......+|.++++... .. +...
T Consensus 177 v~G~mQLYS~er~------~sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~v 248 (494)
T 1bpo_A 177 VVGAMQLYSVDRK------VSQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (494)
T ss_dssp EEEEEEEEESTTC------CEEEECCSEE--EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEE
T ss_pred ccceEEEeecccc------ccchheeeee--eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceee
Confidence 1355666666542 3344444431 112232333 34555554434468999998543 11 1122
Q ss_pred ECcCCC----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971 552 RLTEGP----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR 599 (721)
Q Consensus 552 ~l~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~ 599 (721)
.+...+ ...-.+..|+.=..|+.....+ .|++||+.++...
T Consensus 249 dv~fppe~~~DFPvamqvs~kygviyviTK~G-------~i~lyDleTgt~i 293 (494)
T 1bpo_A 249 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYG-------YIHLYDLETGTCI 293 (494)
T ss_dssp ECCCCTTSTTCCEEEEEEETTTTEEEEEETTS-------EEEEEETTTCCEE
T ss_pred eeeCCcccccCceeEEEecccCCEEEEEecCc-------eEEEEecccceee
Confidence 332221 1123456787766676666554 8999999998654
No 313
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.64 E-value=0.0028 Score=65.76 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=69.1
Q ss_pred eCcCCCEEEEE-eCCcEEEEECCCCceEEEee----cC-ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 426 FSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----KN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 426 ~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----~~-~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
+..+|+.++.. .++.|+.+|.++|+...... .. ...+..+ ++..|++.+ ..-.|+.++..++
T Consensus 45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---------~dg~v~a~D~~tG-- 112 (369)
T 2hz6_A 45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---------KQDIWYVIDLLTG-- 112 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---------EEEEEEEECCC----
T ss_pred eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---------CCCEEEEEECCCC--
Confidence 34566544443 47889999998776432221 11 1122222 233444332 2334566665432
Q ss_pred ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC---CEEEEEE
Q 004971 500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG---EWIAFAS 576 (721)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG---~~l~~~~ 576 (721)
.....+.... ...++|++..|++.+. +..|+.||..+|+. +-...... ...+++++++ ..+++..
T Consensus 113 -~~~w~~~~~~----~~~~~p~~~~v~~~~~---dg~v~a~d~~tG~~--~W~~~~~~--~~~~~~~~~~~~~~~v~~~~ 180 (369)
T 2hz6_A 113 -EKQQTLSSAF----ADSLSPSTSLLYLGRT---EYTITMYDTKTREL--RWNATYFD--YAASLPEDDVDYKMSHFVSN 180 (369)
T ss_dssp -------------------------EEEEEE---EEEEECCCSSSSSC--CCEEEEEE--ECCBCCCCCTTCCCCEEEEE
T ss_pred -cEEEEecCCC----cccccccCCEEEEEec---CCEEEEEECCCCCE--EEeEeccc--ccCccccCCccccceEEEEC
Confidence 1222222211 2356678888888776 67899999998874 22221111 1345555543 4566666
Q ss_pred ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971 577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621 (721)
Q Consensus 577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~ 621 (721)
.++ .|+.+|..+|+..--... .......+.+++||..
T Consensus 181 ~dg-------~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 181 GDG-------LVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLR 217 (369)
T ss_dssp TSC-------EEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred CCC-------EEEEEECCCCcEEEEecC-CCceEEEEEecCCceE
Confidence 554 899999988875432221 1222234556777753
No 314
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.64 E-value=1.1 Score=49.08 Aligned_cols=58 Identities=5% Similarity=-0.067 Sum_probs=32.6
Q ss_pred eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971 586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT 662 (721)
Q Consensus 586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt 662 (721)
..|+.+|+.+|+..=-... . .....-.....|..|++. ..++ .|+.+|.++|++. +..
T Consensus 466 G~l~A~D~~tG~~~W~~~~-~-~~~~~g~~~tagglvf~g-~~dg----------------~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKE-H-LPLWAGVLATAGNLVFTG-TGDG----------------YFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEE-S-SCCCSCCEEETTTEEEEE-CTTS----------------EEEEEETTTCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEecC-C-CCCcccceEeCCCEEEEE-CCCC----------------cEEEEECCCCCEEEEec
Confidence 5799999999875422221 1 122222222345555553 3332 5999999888764 443
No 315
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.31 E-value=1.4 Score=46.70 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=78.3
Q ss_pred CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC------Cc---c--cceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971 511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG------GE---G--YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~------g~---~--~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
.....+..+|||++++..... ..++.++|.+. ++ . ....++..+. ...+.+|.++| .+|++.-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G--~aYTtlf- 396 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRG--NAYTTLF- 396 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSS--EEEEEET-
T ss_pred CCCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCC--ceEeeee-
Confidence 355667999999999987654 55778888763 11 0 0112222222 23678999999 4555543
Q ss_pred CCCCCceeEEEEecCCC----------ceEEeeecCCCCCcCC------eEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971 580 NPGSGSFEMYLIHPNGT----------GLRKLIQSGSAGRANH------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643 (721)
Q Consensus 580 ~~~~~~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~------~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 643 (721)
-..+|..|+++.. ....-... + ....+ -.-.|||+||+....-+..++-+ .+|.
T Consensus 397 ----idSqvvkWni~~a~~~~~g~~~~~v~~k~dv-~-YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~-vGpl--- 466 (638)
T 3sbq_A 397 ----IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV-H-YQPGHLHASLCETNEADGKWLVALSKFSKDRFLP-VGPL--- 466 (638)
T ss_dssp ----TTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-S-SCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCC-CSSS---
T ss_pred ----ecceEEEEeccHHHHHhcCccCCeeeecccc-c-cCCcccccCCCccCCCCccEEEEecccccccCcC-CCCC---
Confidence 1248999998642 12211111 1 11222 23479999999877654332111 1111
Q ss_pred CCccEEEEEcCCCCeEEeccC
Q 004971 644 PYGEIFKIKLDGSDLKRLTQN 664 (721)
Q Consensus 644 ~~~~l~~~d~~~~~~~~lt~~ 664 (721)
.+..-.++|+.|.+.+.|.++
T Consensus 467 ~pen~QlidIsGdkM~lv~D~ 487 (638)
T 3sbq_A 467 HPENDQLIDISGDEMKLVHDG 487 (638)
T ss_dssp CCEEEEEEECSSSSCEEEEEE
T ss_pred CCCcceeEecCCCceEEEecC
Confidence 112355679999888888763
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.29 E-value=0.88 Score=45.33 Aligned_cols=211 Identities=8% Similarity=-0.052 Sum_probs=109.5
Q ss_pred EEEEEeCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCC--CCCCCCCcEEEEEEEccCCCCccceEE
Q 004971 432 RIAFVEFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGP--EFASESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
.|++.+...++.+|+.+++..... + ..........+++.+++..... ..........+|.++.... ..+.
T Consensus 6 ~l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~----~W~~ 81 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS----EWLG 81 (315)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT----EEEE
T ss_pred EEEEEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC----eEEE
Confidence 344445678999999888754422 1 1222334445666666554200 0001112234778887664 4455
Q ss_pred cccCCC-CCcceEEccCCCEEEEEEee-----CCceeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEcc
Q 004971 506 LTTNGK-NNAFPSVSPDGKWIVFRSTR-----TGYKNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 506 l~~~~~-~~~~~~~SpDg~~l~~~s~~-----~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~ 578 (721)
+..... ...+.+..-+++.+++.... .....++++|+.+.+ -..+...+. ...+.+..-+++.++++...
T Consensus 82 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 158 (315)
T 4asc_A 82 MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYVVYGHTVLSHMDLVYVIGGKG 158 (315)
T ss_dssp CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence 544331 12222233355544444322 123579999999876 334432211 11222333456544554431
Q ss_pred CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 658 (721)
. .......+++||+.+.+-+.+... ......+.+..-+++.+++....... ....++++|+++.+.
T Consensus 159 ~-~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 159 S-DRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATVHDGRIIVAAGVTDTG------------LTSSAEVYSITDNKW 224 (315)
T ss_dssp T-TSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEETTEEEEEEEECSSS------------EEEEEEEEETTTTEE
T ss_pred C-CCcccceEEEEeCCCCeEEECCCC-CCchhceEEEEECCEEEEEeccCCCC------------ccceEEEEECCCCeE
Confidence 1 112235899999999877666543 22223333333466655655544321 123699999999988
Q ss_pred EEecc
Q 004971 659 KRLTQ 663 (721)
Q Consensus 659 ~~lt~ 663 (721)
+.+..
T Consensus 225 ~~~~~ 229 (315)
T 4asc_A 225 APFEA 229 (315)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 88864
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.29 E-value=0.47 Score=46.95 Aligned_cols=199 Identities=8% Similarity=-0.053 Sum_probs=101.5
Q ss_pred CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCc
Q 004971 439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNA 514 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~ 514 (721)
..++++|+.+.+.+.+.. .........-+++.+++.... .......++.++.... ....+..... ...
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~ 148 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD----GSTGLSSVEAYNIKSN----EWFHVAPMNTRRSS 148 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC----SSCEEEEEEEEETTTT----EEEEECCCSSCCBS
T ss_pred cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC----CCccCceEEEEeCCCC----eEeecCCCCCcccC
Confidence 468888988887766651 111112222255444444321 1222345777777654 4455544331 222
Q ss_pred ceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 515 FPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
..+..-+++.+++...... ...++++|+.+.+-..+..+...... ..+..-+++.++++..... .....+++
T Consensus 149 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 224 (302)
T 2xn4_A 149 VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGGHDGP--LVRKSVEV 224 (302)
T ss_dssp CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCBSSS--SBCCCEEE
T ss_pred ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--ccEEEECCEEEEECCCCCC--cccceEEE
Confidence 2333345654444433221 35799999998773223222222221 1222235655555443321 11357999
Q ss_pred EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
||+.+++-..+.... ..........-+++.+++....... ...++++||+++.+.+.+.
T Consensus 225 yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 225 YDPTTNAWRQVADMN-MCRRNAGVCAVNGLLYVVGGDDGSC------------NLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSS------------BCCCEEEEETTTTEEEECS
T ss_pred EeCCCCCEeeCCCCC-CccccCeEEEECCEEEEECCcCCCc------------ccccEEEEcCCCCeEEECC
Confidence 999998777765432 2222222333456555554433211 1246999999998888775
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.16 E-value=0.34 Score=48.14 Aligned_cols=201 Identities=7% Similarity=-0.071 Sum_probs=99.1
Q ss_pred CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971 439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA 514 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~ 514 (721)
..++++|+.+.+...+.. .........-+++ |++...... .......++.++.... ....+.... ....
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~--~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~ 142 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGK-IYTSGGSEV--GNSALYLFECYDTRTE----SWHTKPSMLTQRCS 142 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTE-EEEECCBBT--TBSCCCCEEEEETTTT----EEEEECCCSSCCBS
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCE-EEEECCCCC--CCcEeeeEEEEeCCCC----ceEeCCCCcCCcce
Confidence 468888888887666651 1111122222444 444321100 1112234666666553 444444333 2223
Q ss_pred ceEEccCCCEEEEEEeeCC------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 515 FPSVSPDGKWIVFRSTRTG------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
+.+..-+++.+++...... ...++++|+.+.+-..+..+...... ..+..-+++.++++..... .....+
T Consensus 143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~--~~~~~~ 218 (306)
T 3ii7_A 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGL--GGLDNV 218 (306)
T ss_dssp CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCEETT--EEBCCE
T ss_pred eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--ceEEEECCEEEEEeCCCCC--CCCceE
Confidence 3334446655555433221 45799999998873222222222221 2222225655555443221 113479
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
++||+.+.+-+.+.... .......+..-+++.+++...+... ...++++||+++.+.+.+..
T Consensus 219 ~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPMP-WKGVTVKCAAVGSIVYVLAGFQGVG------------RLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEETTTTEEEECCCCS-CCBSCCEEEEETTEEEEEECBCSSS------------BCCEEEEEETTTTEEEEEEE
T ss_pred EEeeCCCCcEEECCCCC-CCccceeEEEECCEEEEEeCcCCCe------------eeeeEEEEcCCCCeEEeCCC
Confidence 99999998777664332 2222222222355555554433211 12469999999988877753
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.13 E-value=0.043 Score=58.30 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=69.1
Q ss_pred EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC------CCcCceeeEEccC---CCEEEE
Q 004971 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE------GPWSDTMCNWSPD---GEWIAF 574 (721)
Q Consensus 504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~------~~~~~~~~~~SpD---G~~l~~ 574 (721)
+.+...-.....++|.|||+.++. .. . ..+|++++..+++...+..+.. +......++|+|| +.+|++
T Consensus 20 ~~~a~~l~~P~~~a~~pdG~l~V~-e~-~-gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPDNQIWLT-ER-A-TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEE-ET-T-TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred EEEECCCCCceEEEEcCCCcEEEE-Ec-C-CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 334333345678999999985543 32 1 2469999876666433333332 2233457999997 778888
Q ss_pred EEccCCC------CCCceeEEEEecCCC-----ceEEeee-cC--CCCCcCCeEECCCCCEEEEEEecC
Q 004971 575 ASDRDNP------GSGSFEMYLIHPNGT-----GLRKLIQ-SG--SAGRANHPYFSPDGKSIVFTSDYG 629 (721)
Q Consensus 575 ~~~~~~~------~~~~~~i~~~d~~~~-----~~~~l~~-~~--~~~~~~~~~~SpDG~~l~~~~~~~ 629 (721)
+...... ......|++++.+.+ ..+.+.. .. .......++|.|||+ |+++..+.
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~ 164 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQ 164 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCT
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCC
Confidence 7753100 001357888887543 1222322 11 112346789999997 55554443
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.92 E-value=0.55 Score=46.44 Aligned_cols=200 Identities=7% Similarity=-0.082 Sum_probs=98.5
Q ss_pred CcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc---eEEcccCC-C
Q 004971 439 PGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA---VRRLTTNG-K 511 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~l~~~~-~ 511 (721)
..++++|+.+.+...+. ..........-+++.+++.... .......+|.++.... . .+.+.... .
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~----~~~~~~~~~~~d~~~~----~~~~W~~~~~~p~~ 102 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD----GRSRLSSVECLDYTAD----EDGVWYSVAPMNVR 102 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC----SSCBCCCEEEEETTCC----TTCCCEEECCCSSC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC----CCccCceEEEEECCCC----CCCeeEECCCCCCC
Confidence 45778888777665554 1111122222344333333211 1112234666665543 3 44444333 2
Q ss_pred CCcceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~ 589 (721)
...+.+..-+++.+++...... ...++++|+.+.+-..+..+...... ..+..-+++.++++..... .....++
T Consensus 103 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~--~~~~~~~ 178 (301)
T 2vpj_A 103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG--AGLVVASGVIYCLGGYDGL--NILNSVE 178 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS--CEEEEETTEEEEECCBCSS--CBCCCEE
T ss_pred ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc--ceEEEECCEEEEECCCCCC--cccceEE
Confidence 2223333345554444432211 34799999998874334434332222 2222336665444443221 1235799
Q ss_pred EEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 590 ~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+||+.+.+-..+... ......+....-+++.+++....... ...+++++|+++.+.+.+..
T Consensus 179 ~~d~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPM-ATKRSGAGVALLNDHIYVVGGFDGTA------------HLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBCSSS------------BCCCEEEEETTTTEEEEECC
T ss_pred EEeCCCCcEEeCCCC-CcccccceEEEECCEEEEEeCCCCCc------------ccceEEEEeCCCCcEEECCC
Confidence 999999877766433 22222222333355544443332211 12469999999998888754
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.89 E-value=0.42 Score=47.98 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=91.5
Q ss_pred eEEEEeCCCcceEeecCC--CCCccccccCCCCCE--EEEEecCC--CCCCcccceeeeeEEEEEcCCCceeEEEec---
Q 004971 197 AVYSTELKTGLTRRLTPY--GVADFSPAVSPSGKY--TAVASYGN--KGWDGEVEMLSTDIYIFLTRDGTQRVKIVE--- 267 (721)
Q Consensus 197 ~l~~v~~~~g~~~~lt~~--~~~~~~p~~SPDG~~--la~~~~~~--~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~--- 267 (721)
.|+.+++++.....+... .+....|.|.-.|+. |++++++. . ..-.||.++.++++...+...
T Consensus 51 gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~--------n~l~vf~iDp~~~~l~~i~~~~~p 122 (355)
T 3amr_A 51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK--------NTIEIYAIDGKNGTLQSMTDPDHP 122 (355)
T ss_dssp EEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTC--------CEEEEEEECTTTCCEEECSCTTSC
T ss_pred CEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCC--------CeEEEEEECCCCCceeeccccccC
Confidence 799999988777777432 123345555445666 67777765 4 234455556667665444210
Q ss_pred --cC-C---ccee--ccC-CeE-EEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEE
Q 004971 268 --NG-G---WPCW--VDE-STL-FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337 (721)
Q Consensus 268 --~~-~---~~~w--s~d-g~l-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~ 337 (721)
.. . ..+. +++ +++ +| ...+++.+..|++.....+... .+..+....+.....+.+.+ ...+|++
T Consensus 123 v~t~~~~pyGlcly~~~~~g~~yaf--V~~k~G~~~q~~l~~~~~g~~~---~~lVR~f~lgsq~EgcvvDd-~~g~Lyv 196 (355)
T 3amr_A 123 IATAINEVYGFTLYHSQKTGKYYAM--VTGKEGEFEQYELKADKNGYIS---GKKVRAFKMNSQTEGMAADD-EYGRLYI 196 (355)
T ss_dssp EECCCSSCCCEEEEECTTTCCEEEE--EECSSSEEEEEEEEECTTSCEE---EEEEEEEECSSCEEEEEEET-TTTEEEE
T ss_pred cCCCCCCeeEEEEEecCCCCcEEEE--EECCCCeEEEEEEEeCCCCccc---ceEEEEecCCCCcceEEEcC-CCCeEEE
Confidence 11 1 2234 453 553 33 3444688888877553222100 12222222333566778887 7778887
Q ss_pred EEecCCCCeeeEEEEECC--CCc-eEEeecc--cCCCCcccCcEE--cCCCCEEEEEEeeCC
Q 004971 338 ATRRPTSSYRHIELFDLV--KNK-FIELTRF--VSPKTHHLNPFI--SPDSSRVGYHKCRGG 392 (721)
Q Consensus 338 ~~~~~g~~~~~l~l~dl~--tg~-~~~l~~~--~~~~~~~~~~~~--Spdg~~l~~~~~~~~ 392 (721)
... +..||.++.+ ++. .+.+... ......+.++++ .++|+..++++..+.
T Consensus 197 ~eE-----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 197 AEE-----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EET-----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred ecc-----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 542 2349999955 211 1222221 111223455556 567773334444444
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.83 E-value=0.86 Score=45.40 Aligned_cols=209 Identities=8% Similarity=-0.051 Sum_probs=101.3
Q ss_pred cEEEEECCCCceEEEeec--Cc-eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcc
Q 004971 440 GVYVVNSDGSNRRQVYFK--NA-FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAF 515 (721)
Q Consensus 440 ~l~v~d~~~g~~~~l~~~--~~-~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~ 515 (721)
.++++|+.+++.+.+..- .. ......-++ .|++...............++.++.... ..+.+.... ....+
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~~ 142 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDRLSF----KWGESDPLPYVVYGH 142 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEETTTT----EEEECCCCSSCCBSC
T ss_pred ceEEecCCCCeEEECCCCCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECCCCC----cEeECCCCCCcccce
Confidence 378888888776665411 11 111111133 4544432100011222345666666553 445554433 22233
Q ss_pred eEEccCCCEEEEEEeeCC---ceeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971 516 PSVSPDGKWIVFRSTRTG---YKNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI 591 (721)
Q Consensus 516 ~~~SpDg~~l~~~s~~~g---~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~ 591 (721)
.+..-+++.+++.....+ ...++++|+.+.+ -..+...+. .....+..-+++.++++..... .....+++|
T Consensus 143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~y 217 (315)
T 4asc_A 143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQTARSLFGATVHDGRIIVAAGVTDT--GLTSSAEVY 217 (315)
T ss_dssp EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEEEEECSS--SEEEEEEEE
T ss_pred eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCCchhceEEEEECCEEEEEeccCCC--CccceEEEE
Confidence 344456654444433121 3489999999876 333332211 1112222336665555554321 123579999
Q ss_pred ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971 592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662 (721)
Q Consensus 592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt 662 (721)
|+.+.+-..+... ...........-+++.+++.......... .........+++++|+++.+.+++.
T Consensus 218 d~~~~~W~~~~~~-p~~r~~~~~~~~~~~l~v~GG~~~~~~~~---~~~~~~~~~~v~~yd~~~~~W~~~~ 284 (315)
T 4asc_A 218 SITDNKWAPFEAF-PQERSSLSLVSLVGTLYAIGGFATLETES---GELVPTELNDIWRYNEEEKKWEGVL 284 (315)
T ss_dssp ETTTTEEEEECCC-SSCCBSCEEEEETTEEEEEEEEEEEECTT---SCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEECCCC-CCcccceeEEEECCEEEEECCccccCcCC---ccccccccCcEEEecCCCChhhhhc
Confidence 9999877776543 22223333333466655555442200000 0000011246999999999888884
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.75 E-value=0.27 Score=49.03 Aligned_cols=200 Identities=6% Similarity=-0.134 Sum_probs=96.6
Q ss_pred CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971 439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA 514 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~ 514 (721)
..++++|+.+.+.+.+.. .........-+++ |++..... .......++.++.... ....+.... ....
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~---~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~ 161 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH-IYAVGGSH---GCIHHNSVERYEPERD----EWHLVAPMLTRRIG 161 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTE-EEEECCEE---TTEECCCEEEEETTTT----EEEECCCCSSCCBS
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCE-EEEEcCCC---CCcccccEEEECCCCC----eEeECCCCCccccc
Confidence 568889988887666651 1111111122444 44432100 1111234566666553 445554333 1222
Q ss_pred ceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 515 FPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
..+..-+++.+++...... ...++++|+.+.+-..+..+...... ...+ .-+++.++++..... .....+++||
T Consensus 162 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~--~~~~~v~~yd 237 (308)
T 1zgk_A 162 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVC-VLHNCIYAAGGYDGQ--DQLNSVERYD 237 (308)
T ss_dssp CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSS--SBCCCEEEEE
T ss_pred eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEE-EECCEEEEEeCCCCC--CccceEEEEe
Confidence 2233335554444332211 35799999988773222222222121 1222 225554444433211 1235799999
Q ss_pred cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+.+.+-..+... .......-...-+++.+++...+... ...+++++|+++.+.+.+..
T Consensus 238 ~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 238 VETETWTFVAPM-KHRRSALGITVHQGRIYVLGGYDGHT------------FLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp TTTTEEEECCCC-SSCCBSCEEEEETTEEEEECCBCSSC------------BCCEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEECCCC-CCCccceEEEEECCEEEEEcCcCCCc------------ccceEEEEcCCCCEEeecCC
Confidence 999877766533 12222222223355555554333211 12479999999988887754
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.65 E-value=2 Score=42.76 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=107.2
Q ss_pred EEEEEeCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCCCCCC--CCCcEEEEEEEccCCCCccceEE
Q 004971 432 RIAFVEFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGPEFAS--ESSEVDIISINVDDVDGVSAVRR 505 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 505 (721)
.|++.+...++.+|..+++..... . ..........+++.+++......... ..-...++.++.... ....
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~----~W~~ 92 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS----EWVG 92 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT----EEEE
T ss_pred hhhhccccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC----cEEE
Confidence 344445556899999888755533 1 12223334455655555431100000 011224777777654 5555
Q ss_pred cccCCC-CCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971 506 LTTNGK-NNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN 580 (721)
Q Consensus 506 l~~~~~-~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 580 (721)
+..... ...+.+..-+++.+++..... ....++++|+.+.+-..+..+..... .+.+..-+++.++++.....
T Consensus 93 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 93 LPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY--GHNVISHNGMIYCLGGKTDD 170 (318)
T ss_dssp CSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE--SCEEEEETTEEEEECCEESS
T ss_pred CCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc--ccEEEEECCEEEEEcCCCCC
Confidence 544332 222233334565555554321 12479999999877322222222111 12223346665555443210
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971 581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR 660 (721)
Q Consensus 581 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 660 (721)
......+++||+.+.+-..+... ......+.+..-+++.+++........ ..+++++|+++.+.+.
T Consensus 171 -~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~------------~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 171 -KKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAIHKGKIVIAGGVTEDGL------------SASVEAFDLKTNKWEV 236 (318)
T ss_dssp -SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEEEEEETTEE------------EEEEEEEETTTCCEEE
T ss_pred -CCccceEEEEcCCCCEEEECCCC-CCCcccceEEEECCEEEEEcCcCCCCc------------cceEEEEECCCCeEEE
Confidence 01235799999999877766533 222222223334666556655433211 2369999999998888
Q ss_pred ecc
Q 004971 661 LTQ 663 (721)
Q Consensus 661 lt~ 663 (721)
+..
T Consensus 237 ~~~ 239 (318)
T 2woz_A 237 MTE 239 (318)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.63 E-value=0.88 Score=44.92 Aligned_cols=202 Identities=7% Similarity=-0.056 Sum_probs=97.8
Q ss_pred CcEEEEECCCCceEEEe--e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971 439 PGVYVVNSDGSNRRQVY--F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA 514 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~--~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~ 514 (721)
..++.+|+.+.+...+. + .........-++ .|++..... .......++.++.... ....+.... ....
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~---~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~ 101 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAG-LVFAVGGFN---GSLRVRTVDSYDPVKD----QWTSVANMRDRRST 101 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEESCBC---SSSBCCCEEEEETTTT----EEEEECCCSSCCBS
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECC-EEEEEeCcC---CCccccceEEECCCCC----ceeeCCCCCccccc
Confidence 35777787777655554 1 111111112233 444432110 1112234666666553 445554433 2222
Q ss_pred ceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971 515 FPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d 592 (721)
+.+..-+++.+++...... ...++++|+.+.+-..+..+...... ..+..-+++.++++............+++||
T Consensus 102 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 102 LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS--VGVGVVGGLLYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCEETTTTEECCCEEEEE
T ss_pred eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC--ceEEEECCEEEEEeCCCCCCCccccEEEEEe
Confidence 3333446665555543221 24799999998773222222222111 1222235655555443321000134799999
Q ss_pred cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+.+.+-..+... ...........-+++.+++....... ...+++++|+++.+.+.+..
T Consensus 180 ~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 180 ATTNEWTYIAEM-STRRSGAGVGVLNNLLYAVGGHDGPL------------VRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp TTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBSSSS------------BCCCEEEEETTTTEEEEECC
T ss_pred CCCCcEEECCCC-ccccccccEEEECCEEEEECCCCCCc------------ccceEEEEeCCCCCEeeCCC
Confidence 999877766433 22222222333355555554333211 12469999999998888864
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.55 E-value=0.52 Score=46.78 Aligned_cols=200 Identities=10% Similarity=-0.037 Sum_probs=101.0
Q ss_pred CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCC
Q 004971 438 FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNN 513 (721)
Q Consensus 438 ~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~ 513 (721)
...++++|+.+++...+.. .........-+++ |++... .. ......++.++.... ....+.... ...
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG-~~---~~~~~~~~~~d~~~~----~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGG-SQ---LFPIKRMDCYNVVKD----SWYSKLGPPTPRD 93 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECC-BS---SSBCCEEEEEETTTT----EEEEEECCSSCCB
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeC-CC---CCCcceEEEEeCCCC----eEEECCCCCcccc
Confidence 3568888888877666651 1111222222444 443321 11 223345666666553 444444433 222
Q ss_pred cceEEccCCCEEEEEEee-C--CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC----ce
Q 004971 514 AFPSVSPDGKWIVFRSTR-T--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG----SF 586 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~-~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~----~~ 586 (721)
.+.+..-+++.+++.... . ....++++|+.+.+-..+..+..... ...+..-+++.++++..... .. ..
T Consensus 94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 169 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC--SHGMVEANGLIYVCGGSLGN--NVSGRVLN 169 (306)
T ss_dssp SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEETTEEEEECCEESC--TTTCEECC
T ss_pred ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc--eeEEEEECCEEEEECCCCCC--CCcccccc
Confidence 333334466555554432 1 23579999999877322222222222 12222336655555443321 11 45
Q ss_pred eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
.+++||+.+.+-..+... ......+....-+++.+++....... ...+++++|+.+.+.+.+..
T Consensus 170 ~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPM-IEARKNHGLVFVKDKIFAVGGQNGLG------------GLDNVEYYDIKLNEWKMVSP 233 (306)
T ss_dssp CEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCEETTE------------EBCCEEEEETTTTEEEECCC
T ss_pred eEEEeCCCCCeEEECCCc-cchhhcceEEEECCEEEEEeCCCCCC------------CCceEEEeeCCCCcEEECCC
Confidence 799999999877766543 22222333333356655554333221 12369999999988888754
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.22 E-value=0.39 Score=50.81 Aligned_cols=154 Identities=11% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCceeCcCCCEEEEEeCC-cEEEEECCCCceEEEe--e---------cCceeeEEcCC---CCeEEEEecCCCC-CCC--
Q 004971 422 SFPSFSPKGDRIAFVEFP-GVYVVNSDGSNRRQVY--F---------KNAFSTVWDPV---REAVVYTSGGPEF-ASE-- 483 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~-~l~v~d~~~g~~~~l~--~---------~~~~~~~~spd---g~~la~~~~~~~~-~~~-- 483 (721)
..++|.|||+.++....+ .|++++..++....+. . +....++|+|| +.+|++....... ...
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 347899999744444343 6999987666654443 1 12347999997 7788776521000 000
Q ss_pred -CCcEEEEEEEccCCC-CccceEEc----ccCC-CCCcceEEccCCCEEEEEEeeC------------------------
Q 004971 484 -SSEVDIISINVDDVD-GVSAVRRL----TTNG-KNNAFPSVSPDGKWIVFRSTRT------------------------ 532 (721)
Q Consensus 484 -~~~~~i~~~~~~~~~-~~~~~~~l----~~~~-~~~~~~~~SpDg~~l~~~s~~~------------------------ 532 (721)
.....|++++.+... .....+.+ .... .....++|.|||+ |+++....
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQAQHTPTQQELN 188 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCCTTCCCCHHHHH
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcccccccccccccccccccc
Confidence 114567777654321 00111222 1111 2345689999997 55543221
Q ss_pred ------CceeEEEEECCCCccc--------ceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971 533 ------GYKNLYIMDAEGGEGY--------GLHRLTEGPWSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 533 ------g~~~l~~~d~~~g~~~--------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~ 577 (721)
....|++++.++.-+. ..+.+..+......++|.|+|+ |+++..
T Consensus 189 aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~ 246 (454)
T 1cru_A 189 GKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQ 246 (454)
T ss_dssp TTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEE
T ss_pred ccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEec
Confidence 1357999998754100 0122333334457799999887 444443
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.79 E-value=0.57 Score=46.59 Aligned_cols=155 Identities=7% Similarity=-0.092 Sum_probs=77.7
Q ss_pred EEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971 488 DIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564 (721)
Q Consensus 488 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~ 564 (721)
.+|.++.... ....+.... ......+..-+++.+++...... ...++++|+.+.+-..+..+...... ..+
T Consensus 91 ~~~~~d~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~ 164 (308)
T 1zgk_A 91 ALDCYNPMTN----QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG--VGV 164 (308)
T ss_dssp CEEEEETTTT----EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS--CEE
T ss_pred eEEEECCCCC----eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc--eEE
Confidence 4566666553 445554433 12222333346655555432221 34799999998773222222222221 112
Q ss_pred EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644 (721)
Q Consensus 565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
..-+++.++++..... .....+++||+.+.+-..+.... ..........-+++.+++....... .
T Consensus 165 ~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~------------~ 229 (308)
T 1zgk_A 165 AVLNRLLYAVGGFDGT--NRLNSAECYYPERNEWRMITAMN-TIRSGAGVCVLHNCIYAAGGYDGQD------------Q 229 (308)
T ss_dssp EEETTEEEEECCBCSS--CBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSS------------B
T ss_pred EEECCEEEEEeCCCCC--CcCceEEEEeCCCCeEeeCCCCC-CccccceEEEECCEEEEEeCCCCCC------------c
Confidence 2225554444443321 11357999999988776664321 2222222222355544443333211 1
Q ss_pred CccEEEEEcCCCCeEEecc
Q 004971 645 YGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 645 ~~~l~~~d~~~~~~~~lt~ 663 (721)
..+++++|+++.+.+.+..
T Consensus 230 ~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 230 LNSVERYDVETETWTFVAP 248 (308)
T ss_dssp CCCEEEEETTTTEEEECCC
T ss_pred cceEEEEeCCCCcEEECCC
Confidence 2469999999988888764
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.56 E-value=2.3 Score=42.32 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=82.0
Q ss_pred cEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCC---ceeEEEEECCCCcccceEECcCCCcCce
Q 004971 486 EVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG---YKNLYIMDAEGGEGYGLHRLTEGPWSDT 561 (721)
Q Consensus 486 ~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g---~~~l~~~d~~~g~~~~~~~l~~~~~~~~ 561 (721)
...++.++.... ....+.... ....+.+..-+++.+++.....+ ...++++|+.+.+-..+..+......
T Consensus 126 ~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-- 199 (318)
T 2woz_A 126 LDSVLCYDPVAA----KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-- 199 (318)
T ss_dssp EEEEEEEETTTT----EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--
T ss_pred cceEEEEeCCCC----CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--
Confidence 345777777654 445544333 12223334456665555443221 34799999998773222222222221
Q ss_pred eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ 641 (721)
Q Consensus 562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 641 (721)
..+..-+++.++++..... .....+++||+.+.+-..+... ......+....-+++.+++....... .+ .....
T Consensus 200 ~~~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~-~~--~~~~~ 273 (318)
T 2woz_A 200 FGVAIHKGKIVIAGGVTED--GLSASVEAFDLKTNKWEVMTEF-PQERSSISLVSLAGSLYAIGGFAMIQ-LE--SKEFA 273 (318)
T ss_dssp CEEEEETTEEEEEEEEETT--EEEEEEEEEETTTCCEEECCCC-SSCCBSCEEEEETTEEEEECCBCCBC-------CCB
T ss_pred ceEEEECCEEEEEcCcCCC--CccceEEEEECCCCeEEECCCC-CCcccceEEEEECCEEEEECCeeccC-CC--Cceec
Confidence 1222236665566554321 1235799999999887776543 22222333333455544443322210 00 00000
Q ss_pred CCCCccEEEEEcCCCCeEEe
Q 004971 642 YQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 642 ~~~~~~l~~~d~~~~~~~~l 661 (721)
.....++|++|+++.+.+++
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 274 PTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCBCCCEEEEETTTTEEEEE
T ss_pred cceeeeEEEEeCCCCEehhh
Confidence 11235799999999988887
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.45 E-value=3.6 Score=41.52 Aligned_cols=158 Identities=10% Similarity=-0.005 Sum_probs=75.7
Q ss_pred EEEEEEEccCCCCccceEEcccCCC-CCc-ceEEccCCCEEEEEEeeC-C--ceeEEEEEC--CCCcccceEECcCC---
Q 004971 487 VDIISINVDDVDGVSAVRRLTTNGK-NNA-FPSVSPDGKWIVFRSTRT-G--YKNLYIMDA--EGGEGYGLHRLTEG--- 556 (721)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~SpDg~~l~~~s~~~-g--~~~l~~~d~--~~g~~~~~~~l~~~--- 556 (721)
..++.++.... ....+..... ... ..+..-+++.+++..... + ...++++|+ .+.+ -..+...
T Consensus 168 ~~v~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~---W~~~~~~~~~ 240 (357)
T 2uvk_A 168 KFLLSFDPSTQ----QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK---WNKLAPVSSP 240 (357)
T ss_dssp CEEEEEETTTT----EEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE---EEECCCSSTT
T ss_pred ccEEEEeCCCC----cEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc---EEecCCCCCC
Confidence 35667776553 4444443321 122 233334555444433211 1 346888887 5554 3333221
Q ss_pred CcCceeeEEccCCCEEEEEEccCC---------------CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971 557 PWSDTMCNWSPDGEWIAFASDRDN---------------PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621 (721)
Q Consensus 557 ~~~~~~~~~SpDG~~l~~~~~~~~---------------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~ 621 (721)
.......+..-+++.++++..... .......+++||+.+.+-+++... ......+.+..-+++.
T Consensus 241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRAYGVSLPWNNSL 319 (357)
T ss_dssp TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCBSSEEEEETTEE
T ss_pred cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcccceeEEeCCEE
Confidence 111122234446665555443210 001124789999998877766543 2233334445567777
Q ss_pred EEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663 (721)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~ 663 (721)
+++...+.... ...+++++++++++...+..
T Consensus 320 ~v~GG~~~~~~-----------~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 320 LIIGGETAGGK-----------AVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEECGGGC-----------EEEEEEEEEC-CCSCEEEC-
T ss_pred EEEeeeCCCCC-----------EeeeEEEEEEcCcEeEeeec
Confidence 77766543211 02469999999998776643
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.97 E-value=4 Score=48.68 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=122.0
Q ss_pred CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCC
Q 004971 344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDG 421 (721)
Q Consensus 344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 421 (721)
++..++.+.|+..+.. +.+. .....+....|..+.|+.- . + ..+.+.++... .+..+ ....+
T Consensus 45 ~~~~~vvIidl~~~~~--~~rr---pi~AdsAIMnP~~~iiALr-a--g-------~~lQiFnl~~k~klks~~-~~e~V 108 (1630)
T 1xi4_A 45 GEQAQVVIIDMNDPSN--PIRR---PISADSAIMNPASKVIALK-A--G-------KTLQIFNIEMKSKMKAHT-MTDDV 108 (1630)
T ss_pred CCCceEEEEECCCCCC--cccc---cccchhhccCCCcceEEEe-c--C-------CeEEEeehHHhhhhcccc-cCCCc
Confidence 3455899999998763 2211 1222234556667766653 2 2 23555555433 22222 12233
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECCCC-ceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSDGS-NRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN 493 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~ 493 (721)
.+-.|-. .+.|+.++...||.|++.+. .++.++ ...+..+.-++|.+|++.+.-...-..-.|...+|.++
T Consensus 109 vfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 109 TFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred eEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 4445643 34789999999999999753 233333 34567888999999999876422212235778888877
Q ss_pred ccCCCCccceEEcccCCCCCc---ceEEccCCCEEEEEEeeCCceeEEEEECCCC---cc---cceEECcCCC----cCc
Q 004971 494 VDDVDGVSAVRRLTTNGKNNA---FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG---EG---YGLHRLTEGP----WSD 560 (721)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~~---~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g---~~---~~~~~l~~~~----~~~ 560 (721)
..- .+.+..+...-. .....+..+.++|+........|.++++... .. +....+...+ ...
T Consensus 188 r~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp 261 (1630)
T 1xi4_A 188 RKV------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (1630)
T ss_pred ccc------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence 542 233333331111 1112233445555554333468999988542 11 1111222111 112
Q ss_pred eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971 561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~ 598 (721)
..+..|+.-..|+.....+ .|++||+.++..
T Consensus 262 v~~~vs~k~g~iy~itk~G-------~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYG-------YIHLYDLETGTC 292 (1630)
T ss_pred eEEEeccccCEEEEEecCc-------eEEEEecccchh
Confidence 3445676655555555443 799999998853
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.91 E-value=5.4 Score=39.41 Aligned_cols=220 Identities=11% Similarity=0.135 Sum_probs=123.0
Q ss_pred ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecC
Q 004971 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~ 477 (721)
..+.+.|+..+... ...+......-.+|..+-||.-....|.++|+++..... .. ...+..=.|-. .+.|++++
T Consensus 49 ~~VvIiDl~n~~~~-~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT-- 124 (365)
T 2xzh_A 49 AQVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT-- 124 (365)
T ss_dssp EEEEEEETTSTTSC-EEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEECS-SSEEEEEE--
T ss_pred CEEEEEECCCCCCc-cccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEecC-CCeEEEEc--
Confidence 46778888766442 333445566677998888888888899999999886432 22 44444455543 34666665
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEee--CC--ceeEEEEECCCCcccc
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTR--TG--YKNLYIMDAEGGEGYG 549 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~--~g--~~~l~~~d~~~g~~~~ 549 (721)
+..+.-|.+..+.. ..+.+..+. ..+.....++|.+|++...-. ++ .+.+.+|..+.+.
T Consensus 125 ------~taVyHWs~~~~s~----P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--- 191 (365)
T 2xzh_A 125 ------DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--- 191 (365)
T ss_dssp ------SSEEEEEESSTTCC----CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---
T ss_pred ------CCcEEEEcccCCCC----CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc---
Confidence 24555555543221 333333332 334456789999999887542 21 2466677776543
Q ss_pred eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCC---c------eEEeeecC--CCCCcCCe
Q 004971 550 LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGT---G------LRKLIQSG--SAGRANHP 613 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~---~------~~~l~~~~--~~~~~~~~ 613 (721)
.+..++... ....+-.+| +.++|+.... ...+|.++++... . ...+.... .....-.+
T Consensus 192 -sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~~----~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVam 265 (365)
T 2xzh_A 192 -SQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRGQ----AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 265 (365)
T ss_dssp -EEEECCSEE-EEEEECCTTCSSCEEEEEEEEEET----TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEE
T ss_pred -cceeeeeee-eeEEEecCCCCCCceEEEEEEecC----CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEE
Confidence 333333211 223343333 2455555542 3468999998442 1 11222111 11122334
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
..|+-=..|+..+.. + -||+||+.++...
T Consensus 266 qvs~kygviyviTK~-G----------------~ihlyDleTgt~i 294 (365)
T 2xzh_A 266 QISEKHDVVFLITKY-G----------------YIHLYDLETGTCI 294 (365)
T ss_dssp EEETTTTEEEEEETT-S----------------EEEEEETTTCCEE
T ss_pred EecccCCEEEEEeCC-c----------------EEEEEEcccCcEE
Confidence 556655555555543 3 4999999998754
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.85 E-value=6.9 Score=40.35 Aligned_cols=220 Identities=10% Similarity=0.116 Sum_probs=123.2
Q ss_pred ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecC
Q 004971 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~ 477 (721)
..+.+.|+..+... +..+......-.+|..+.||.-....|.++|+++..... .. ...+..=.|- +.+.|++++
T Consensus 48 ~~vvIiDl~~~~~~-~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi-s~~~l~lVT-- 123 (494)
T 1bpo_A 48 AQVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVT-- 123 (494)
T ss_dssp CEEEEEETTSTTSC-EEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE-ETTEEEEEC--
T ss_pred CeEEEEECCCCCcc-eecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec-CCCeEEEEc--
Confidence 56788888765432 333444556677898888888788899999999876432 22 3444444454 334677665
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEee--CC--ceeEEEEECCCCcccc
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTR--TG--YKNLYIMDAEGGEGYG 549 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~--~g--~~~l~~~d~~~g~~~~ 549 (721)
+..+.-|.+..+.. ..+.+..+. ..+.....++|.+|++...-. ++ .+.+.+|..+.+.
T Consensus 124 ------~taVyHWsi~~~s~----P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--- 190 (494)
T 1bpo_A 124 ------DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--- 190 (494)
T ss_dssp ------SSEEEEEESSSSCC----CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---
T ss_pred ------CCeeEEecccCCCC----chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---
Confidence 34555555543331 333333332 334456789999999977542 21 2456677776543
Q ss_pred eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCC---------ceEEeeecC--CCCCcCCe
Q 004971 550 LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGT---------GLRKLIQSG--SAGRANHP 613 (721)
Q Consensus 550 ~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~~--~~~~~~~~ 613 (721)
-..+..+.. ....+-.+| +.++|+.... ....|.++++... +...+.... .......+
T Consensus 191 sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~~----~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 191 SQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQ----AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp EEEECCSEE--EEEEEECTTCSSEEEEEEEEECST----TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred cchheeeee--eeEEEecCCCCCCceEEEEEEecC----CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 233333322 223343333 2455555442 3358999998543 111121111 11122345
Q ss_pred EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971 614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659 (721)
Q Consensus 614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 659 (721)
..|+.-..|+..+..+ -|++||+.++...
T Consensus 265 qvs~kygviyviTK~G-----------------~i~lyDleTgt~i 293 (494)
T 1bpo_A 265 QISEKHDVVFLITKYG-----------------YIHLYDLETGTCI 293 (494)
T ss_dssp EEETTTTEEEEEETTS-----------------EEEEEETTTCCEE
T ss_pred EecccCCEEEEEecCc-----------------eEEEEecccceee
Confidence 5676666565555433 4999999998754
No 334
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.09 E-value=0.88 Score=48.13 Aligned_cols=142 Identities=12% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCc-ccceEECc----CC-----CcCceeeEEccC---CCEEEEEE
Q 004971 511 KNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLT----EG-----PWSDTMCNWSPD---GEWIAFAS 576 (721)
Q Consensus 511 ~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~----~~-----~~~~~~~~~SpD---G~~l~~~~ 576 (721)
.....++|.|||+ +|+++.. ...|++++.++.. ...+..+. .+ ......++|+|| ..+|++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er---~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEK---EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEET---TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeC---CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3567789999996 5555543 4579999765432 11123332 11 233456899997 44566554
Q ss_pred ccCCC------CCCceeEEEEecCCC--------ceEEeeec---CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC-
Q 004971 577 DRDNP------GSGSFEMYLIHPNGT--------GLRKLIQS---GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST- 638 (721)
Q Consensus 577 ~~~~~------~~~~~~i~~~d~~~~--------~~~~l~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~- 638 (721)
..... ......|.++.+..+ +.+.+... ........+.|.|||+ ||++..+.+...++...
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~ 169 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDDMEEM 169 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHHHHHC
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCccccc
Confidence 32100 001247777777532 22333321 1122335689999996 55555544321000000
Q ss_pred CCCCCCCccEEEEEcCCC
Q 004971 639 PHQYQPYGEIFKIKLDGS 656 (721)
Q Consensus 639 ~~~~~~~~~l~~~d~~~~ 656 (721)
...-...+.|++++.+++
T Consensus 170 q~~~~~~GkIlRi~~dg~ 187 (463)
T 2wg3_C 170 DGLSDFTGSVLRLDVDTD 187 (463)
T ss_dssp TTCCSCTTEEEEEBCCCC
T ss_pred cCcCCCCeeEEEEECCCC
Confidence 001233567899998874
No 335
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=92.52 E-value=2.9 Score=45.40 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred eeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 561 TMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 561 ~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
..++|+|+|+.++........ ..+...++.++..+++++++........+..+.|+|||++|++.....+
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQHPG 553 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEECCC
Confidence 468999999844433322100 1244678999999999888776545567789999999999988766543
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.45 E-value=5.1 Score=44.87 Aligned_cols=203 Identities=8% Similarity=0.044 Sum_probs=100.3
Q ss_pred CcEEEEECCCCceEEEe-e------c--C-ceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 439 PGVYVVNSDGSNRRQVY-F------K--N-AFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~-~------~--~-~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
..++++|+.+++...+. . . . ......-+ +++.+++..... .......+|.++.... ....+.
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~---~~~~~~dv~~yd~~t~----~W~~~~ 484 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA---PHQGLSDNWIFDMKTR----EWSMIK 484 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS---TTCBCCCCEEEETTTT----EEEECC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC---CCCccccEEEEeCCCC----cEEECC
Confidence 46889999888766655 2 0 1 11222222 554443432110 0111234666666553 445554
Q ss_pred cCC-CCCcceEEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC------CCcCceeeEEccC-CCEEEEEEcc
Q 004971 508 TNG-KNNAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE------GPWSDTMCNWSPD-GEWIAFASDR 578 (721)
Q Consensus 508 ~~~-~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~------~~~~~~~~~~SpD-G~~l~~~~~~ 578 (721)
... ....+.+.. .+++.+++....... .++++|+.+.+ -..+.. .........+..+ ++.++++...
T Consensus 485 ~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~ 560 (695)
T 2zwa_A 485 SLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF 560 (695)
T ss_dssp CCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBC
T ss_pred CCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcC
Confidence 433 222233333 477766665543323 89999999877 333332 1222223555655 4444444332
Q ss_pred CCCCCCceeEEEEecCCCc------eEEeeecCCCCCcC-CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEE
Q 004971 579 DNPGSGSFEMYLIHPNGTG------LRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI 651 (721)
Q Consensus 579 ~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (721)
.........+++||+.+.+ -..+.......... ......|++.+++....... ......++++|
T Consensus 561 ~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~v~~y 631 (695)
T 2zwa_A 561 MDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSG---------LFDRTNSIISL 631 (695)
T ss_dssp TTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSC---------CCCTTTSEEEE
T ss_pred CCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCC---------CCCCCCeEEEE
Confidence 1100123589999998887 44554311112222 23333335555553332210 01223579999
Q ss_pred EcCCCCeEEe
Q 004971 652 KLDGSDLKRL 661 (721)
Q Consensus 652 d~~~~~~~~l 661 (721)
|+.+.+.+.+
T Consensus 632 d~~t~~W~~~ 641 (695)
T 2zwa_A 632 DPLSETLTSI 641 (695)
T ss_dssp ETTTTEEEEC
T ss_pred ECCCCeEEEe
Confidence 9998877743
No 337
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.35 E-value=5.1 Score=42.21 Aligned_cols=130 Identities=4% Similarity=-0.050 Sum_probs=67.6
Q ss_pred cCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc----C-----CCCCcceEEccC---CC
Q 004971 457 KNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT----N-----GKNNAFPSVSPD---GK 523 (721)
Q Consensus 457 ~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~----~-----~~~~~~~~~SpD---g~ 523 (721)
.....++|.|||+ +|+++. ..+. |+.++.++.........+.. . ......++|+|| ..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e-------r~G~--i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE-------KEGY--VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE-------TTTE--EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred CCceEEEECCCCCeEEEEEe-------CCce--EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 4567889999997 677765 2344 44444333200011122211 1 123455899997 44
Q ss_pred EEEEEEeeCC----------ceeEEEEECCCC--------cccceEECc--CCCcCceeeEEccCCCEEEEEEccCCC--
Q 004971 524 WIVFRSTRTG----------YKNLYIMDAEGG--------EGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNP-- 581 (721)
Q Consensus 524 ~l~~~s~~~g----------~~~l~~~d~~~g--------~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~-- 581 (721)
+|++...... ...|.++.+..+ +.+.+..+. ........++|.|||+ |+++..+...
T Consensus 85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~ 163 (463)
T 2wg3_C 85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITL 163 (463)
T ss_dssp EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCH
T ss_pred EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCC
Confidence 5555433211 147877877532 111122222 1122346799999995 6666554310
Q ss_pred ---------CCCceeEEEEecCCC
Q 004971 582 ---------GSGSFEMYLIHPNGT 596 (721)
Q Consensus 582 ---------~~~~~~i~~~d~~~~ 596 (721)
......|+++++++.
T Consensus 164 ~~~~~~q~~~~~~GkIlRi~~dg~ 187 (463)
T 2wg3_C 164 DDMEEMDGLSDFTGSVLRLDVDTD 187 (463)
T ss_dssp HHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred CccccccCcCCCCeeEEEEECCCC
Confidence 012347999998873
No 338
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.78 E-value=12 Score=37.92 Aligned_cols=194 Identities=16% Similarity=0.120 Sum_probs=95.3
Q ss_pred EEEEECCCC--ceEEeeccc----CCCCcccCcEEc---CC---CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee
Q 004971 349 IELFDLVKN--KFIELTRFV----SPKTHHLNPFIS---PD---SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL 416 (721)
Q Consensus 349 l~l~dl~tg--~~~~l~~~~----~~~~~~~~~~~S---pd---g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 416 (721)
|.++|+.++ +......+. ........+++. |+ ++..+|..+... ..|.+.++..+...-..
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~-------~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLR-------GALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTT-------TEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCC-------CcEEEEECCCCcEEEEc
Confidence 666677766 533221111 112223445555 22 256667666554 56888888766321111
Q ss_pred cccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCC----CCeEEEEecCCCCCCCCCcEEEEEE
Q 004971 417 FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV----REAVVYTSGGPEFASESSEVDIISI 492 (721)
Q Consensus 417 ~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spd----g~~la~~~~~~~~~~~~~~~~i~~~ 492 (721)
...+.|| ....+.-.+.-+. + ...+..++.||+ +++|+|... ...++|.+
T Consensus 198 ------~~~~~pd-~~~~~~i~G~~~~----------~-~~Gi~gIaLsp~~~~~~~~LYf~pl--------ss~~ly~V 251 (381)
T 3q6k_A 198 ------HPTFKAE-RPTKFDYGGKEYE----------F-KAGIFGITLGDRDSEGNRPAYYLAG--------SAIKVYSV 251 (381)
T ss_dssp ------CGGGSCC-SCEEEEETTEEEE----------E-CCCEEEEEECCCCTTSCCEEEEEES--------SCSEEEEE
T ss_pred ------cCCCccc-cCcceEECCEEeE----------e-ccCceEEEecCCcCCCCeEEEEEEC--------CCCcEEEE
Confidence 1234565 2222222222221 1 346788999998 899999863 34567777
Q ss_pred Ecc---CCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc--cceEECcCCC--cCceee
Q 004971 493 NVD---DVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG--YGLHRLTEGP--WSDTMC 563 (721)
Q Consensus 493 ~~~---~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~--~~~~~l~~~~--~~~~~~ 563 (721)
.+. ........+.+...+ ......+..+....|+|..-. ...|.+|+..+... .....+.... .....+
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~ 329 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN--TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDI 329 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS--SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEE
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc--CCeEEEEeCCCCccccCceEEEEECCCccccCeE
Confidence 632 110111333333322 111123454333456666532 66899999875111 1133333322 123456
Q ss_pred EEccCCCEEEEEEcc
Q 004971 564 NWSPDGEWIAFASDR 578 (721)
Q Consensus 564 ~~SpDG~~l~~~~~~ 578 (721)
.+.+||. |++.+++
T Consensus 330 ~i~~~g~-Lwv~sn~ 343 (381)
T 3q6k_A 330 SVDSKGG-LWFMSNG 343 (381)
T ss_dssp EECTTSC-EEEEECS
T ss_pred EECCCCe-EEEEECc
Confidence 6666664 6666554
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.66 E-value=9.8 Score=39.12 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=89.9
Q ss_pred CCceeCcCCCEEEEEeCCcEEEEECC-CCceEEEe-e-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971 422 SFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQVY-F-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV 494 (721)
Q Consensus 422 ~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l~-~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~ 494 (721)
++...+.+|..|++..++.|+..++. ....+.+. + ..+..+..||+|+.||+.. ...+.|..+..
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~ 95 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPW 95 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCT
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecC
Confidence 34455678888988888889888887 44455554 2 1467899999999999985 35666666663
Q ss_pred cCCCCc-------cce--EEccc----CCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--
Q 004971 495 DDVDGV-------SAV--RRLTT----NGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-- 556 (721)
Q Consensus 495 ~~~~~~-------~~~--~~l~~----~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-- 556 (721)
...... ... ..+.. ....+....|+|- |..|++... +..|++||+.....+ +..+...
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~-P~~L~k~~~ 171 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEK-PIVLNKPNN 171 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSC-CEEESCCCS
T ss_pred ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCC-Ccchhcccc
Confidence 221000 011 12211 1234566788885 457888877 789999999864321 2222211
Q ss_pred -------CcCceeeEEccCCCEEEEEE
Q 004971 557 -------PWSDTMCNWSPDGEWIAFAS 576 (721)
Q Consensus 557 -------~~~~~~~~~SpDG~~l~~~~ 576 (721)
...+.+++|+++|=.|+...
T Consensus 172 ~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 172 SFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp EEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred ccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 13356788999887777765
No 340
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.96 E-value=10 Score=38.49 Aligned_cols=156 Identities=9% Similarity=0.100 Sum_probs=86.3
Q ss_pred CEEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971 431 DRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507 (721)
Q Consensus 431 ~~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 507 (721)
+..||. ....|.++|+.+++..++.. ..+.|| ....+...+ ....+.
T Consensus 170 ~~~aYItD~~~~gLIVydl~~~~swRv~~-----~~~~pd-~~~~~~i~G------------------------~~~~~~ 219 (381)
T 3q6k_A 170 ETFVYITNFLRGALFIYDHKKQDSWNVTH-----PTFKAE-RPTKFDYGG------------------------KEYEFK 219 (381)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-----GGGSCC-SCEEEEETT------------------------EEEEEC
T ss_pred ccEEEEEcCCCCcEEEEECCCCcEEEEcc-----CCCccc-cCcceEECC------------------------EEeEec
Confidence 456666 36789999999998777762 124455 222222211 212222
Q ss_pred cCCCCCcceEEccC----CCEEEEEEeeCCceeEEEEE---CCCCcc-cceEECcCCC--cCceeeEEccCCCEEEEEEc
Q 004971 508 TNGKNNAFPSVSPD----GKWIVFRSTRTGYKNLYIMD---AEGGEG-YGLHRLTEGP--WSDTMCNWSPDGEWIAFASD 577 (721)
Q Consensus 508 ~~~~~~~~~~~SpD----g~~l~~~s~~~g~~~l~~~d---~~~g~~-~~~~~l~~~~--~~~~~~~~SpDG~~l~~~~~ 577 (721)
..+..+++||+ +++|+|..-. ..++|.+. +..... ..++.+.... ..-...+.++....|+|+.-
T Consensus 220 ---~Gi~gIaLsp~~~~~~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~ 294 (381)
T 3q6k_A 220 ---AGIFGITLGDRDSEGNRPAYYLAGS--AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA 294 (381)
T ss_dssp ---CCEEEEEECCCCTTSCCEEEEEESS--CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES
T ss_pred ---cCceEEEecCCcCCCCeEEEEEECC--CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEec
Confidence 14567899998 8999999763 34788876 222211 1133333221 11123456533335677665
Q ss_pred cCCCCCCceeEEEEecCC-----CceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971 578 RDNPGSGSFEMYLIHPNG-----TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628 (721)
Q Consensus 578 ~~~~~~~~~~i~~~d~~~-----~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~ 628 (721)
.. ..|+.|+..+ +....+.....-.....+.+..||. |++.+++
T Consensus 295 ~~------~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn~ 343 (381)
T 3q6k_A 295 NT------KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMSNG 343 (381)
T ss_dssp SS------SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEECS
T ss_pred cC------CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEECc
Confidence 43 4899999876 2334454431112335567777775 6666654
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.92 E-value=14 Score=37.00 Aligned_cols=157 Identities=7% Similarity=-0.066 Sum_probs=73.7
Q ss_pred CcEEEEECCCCceEEEeec---Cce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---C
Q 004971 439 PGVYVVNSDGSNRRQVYFK---NAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---K 511 (721)
Q Consensus 439 ~~l~v~d~~~g~~~~l~~~---~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~ 511 (721)
..++++|+.+.+.+.+..- ... .....-++ .|++.............+.+|+++.... ....+.... .
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~----~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGD-KTWLINGEAKPGLRTDAVFELDFTGNNL----KWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETT-EEEEECCEEETTEECCCEEEEECC---C----EEEECCCSSTTTC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECC-EEEEEeeecCCCcccCceEEEEecCCCC----cEEecCCCCCCcc
Confidence 5799999998887666521 111 11222234 4444421000000122344444422332 444443322 1
Q ss_pred CCcceEEccCCCEEEEEEeeCC-------------------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTG-------------------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g-------------------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l 572 (721)
.....+...+++.+++...... ...++++|+.+.+-..+..+...... ..+..-+++.+
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~ 320 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLL 320 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEE
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEE
Confidence 1222245556665555432110 14688999998775445444443332 23344577777
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 603 (721)
+++..+... ....+++++++++++...+..
T Consensus 321 v~GG~~~~~-~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 321 IIGGETAGG-KAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEECGGG-CEEEEEEEEEC-CCSCEEEC-
T ss_pred EEeeeCCCC-CEeeeEEEEEEcCcEeEeeec
Confidence 777654310 113689999999988766543
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.10 E-value=22 Score=37.89 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=104.5
Q ss_pred CCCEEEEEe--CCcEEEEECCCCceEEEe----ecCceeeEEc--CCCCeEEEEecC--------CCCC-CCCCcEEEE-
Q 004971 429 KGDRIAFVE--FPGVYVVNSDGSNRRQVY----FKNAFSTVWD--PVREAVVYTSGG--------PEFA-SESSEVDII- 490 (721)
Q Consensus 429 DG~~la~~~--~~~l~v~d~~~g~~~~l~----~~~~~~~~~s--pdg~~la~~~~~--------~~~~-~~~~~~~i~- 490 (721)
||++|.... +.++-+++++.=+..+|. ...+....+- |+-.+++..+.- ...+ ....+..+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 677776663 678999999887766655 2233344443 777777766531 1111 111122333
Q ss_pred EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC------------CceeEEEEE-----------------
Q 004971 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT------------GYKNLYIMD----------------- 541 (721)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~------------g~~~l~~~d----------------- 541 (721)
.++.++. ...-++.- ++.......+++|+|.++.+..+ ....+.+++
T Consensus 221 ~iD~~tm---~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 221 AIDAETM---EMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEETTTC---SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEcCCcc---EEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 3444332 11122222 23556678899999998887542 122333333
Q ss_pred --------CCC----CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC------Cce-----
Q 004971 542 --------AEG----GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG------TGL----- 598 (721)
Q Consensus 542 --------~~~----g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~------~~~----- 598 (721)
... ++ ..+..+... -....+..+|||++++....-. ..+.++|.+. ++.
T Consensus 297 g~gv~ViD~~~~~~~~~-~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLs------ptvtV~d~~k~~~~~~~k~~~~~~ 368 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDS-KFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLS------PTCSMIAIDKLPDLFAGKLADPRD 368 (638)
T ss_dssp TCCCCEEECSCBTTBCC-SSEEEEEES-SSCCCEEECTTSCEEEEECTTS------SBEEEEEGGGHHHHHTTCCSCGGG
T ss_pred CCCeeEEccccccccCC-ceEEEEeCC-CCCcceeeCCCCCEEEEcCCCC------CeEEEEEeehhhhhhhccccCccc
Confidence 322 11 001111111 1235678999999998877543 3788888753 111
Q ss_pred EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654 (721)
Q Consensus 599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 654 (721)
........+-...+.+|.++| .+|++---. ++|..|+++
T Consensus 369 ~~~ae~e~GlGPlHt~Fd~~G--~aYTtlfid---------------SqvvkWni~ 407 (638)
T 3sbq_A 369 VIVGEPELGLGPLHTTFDGRG--NAYTTLFID---------------SQVVKWNME 407 (638)
T ss_dssp GEEECCBCCSCEEEEEECSSS--EEEEEETTT---------------TEEEEEEHH
T ss_pred ceEeeccCCCcccEEEECCCC--ceEeeeeec---------------ceEEEEecc
Confidence 111111123345678999999 455554322 368888874
No 343
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=88.82 E-value=3.5 Score=44.15 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=49.8
Q ss_pred ceeeEEccCCCEEEEEEccCCC------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971 560 DTMCNWSPDGEWIAFASDRDNP------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630 (721)
Q Consensus 560 ~~~~~~SpDG~~l~~~~~~~~~------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 630 (721)
...+.|+++|. |.|+.+.... ..+...+|+++..+++++++.........+.++||||+++|++.....+
T Consensus 478 PDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 45789999997 5664432110 1134589999999999888765323356789999999999998887655
No 344
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=87.82 E-value=23 Score=35.09 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=82.1
Q ss_pred ceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971 424 PSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG 499 (721)
Q Consensus 424 ~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~ 499 (721)
+.+.++++.++....+.|+.. .++|+ -+.+. ...+..+.++|+++.+++... + .+|.....++
T Consensus 127 i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------G--~~~~S~d~gG-- 193 (327)
T 2xbg_A 127 IKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR--------G--SFYSTWEPGQ-- 193 (327)
T ss_dssp EEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT--------S--SEEEEECTTC--
T ss_pred EEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC--------C--cEEEEeCCCC--
Confidence 344555654444445555543 44443 44444 334567888999887766532 2 2344332211
Q ss_pred ccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----CCcCceeeEEccCCCEEEE
Q 004971 500 VSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----GPWSDTMCNWSPDGEWIAF 574 (721)
Q Consensus 500 ~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----~~~~~~~~~~SpDG~~l~~ 574 (721)
..-+.+.. .......++++++++.++ ... ...+++.+.+.|+. -..+.. ....+..+++.++++.++.
T Consensus 194 -~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~---~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 194 -TAWEPHNRTTSRRLHNMGFTPDGRLWM-IVN---GGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp -SSCEEEECCSSSCEEEEEECTTSCEEE-EET---TTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred -CceeECCCCCCCccceeEECCCCCEEE-EeC---CceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 12222322 123445677889987544 333 34566654443432 222221 1123467788888775554
Q ss_pred EEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCC
Q 004971 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGK 620 (721)
Q Consensus 575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~ 620 (721)
.. .. .||+ ..++|+.-...... ....+..+.|.++++
T Consensus 267 g~-~g-------~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~ 305 (327)
T 2xbg_A 267 GG-AG-------ALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 305 (327)
T ss_dssp ES-TT-------CEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred eC-CC-------eEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence 33 32 4654 44555433322211 123456677765544
No 345
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=87.59 E-value=13 Score=38.20 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=61.7
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc----------ceE--ECcC----CCcCceeeEEccC---CCEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY----------GLH--RLTE----GPWSDTMCNWSPD---GEWI 572 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~----------~~~--~l~~----~~~~~~~~~~SpD---G~~l 572 (721)
.+..+..||+|++|++.. ..+|.++.+..+... +.+ .+.. ....+..+.|.|- |..|
T Consensus 67 ~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEECCCCCEEEEec----CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 456789999999999987 467888777632210 011 1111 1234677889885 4578
Q ss_pred EEEEccCCCCCCceeEEEEecCCCceEEe-eecC--------CCCCcCCeEECCCCCEEEEEE
Q 004971 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKL-IQSG--------SAGRANHPYFSPDGKSIVFTS 626 (721)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~--------~~~~~~~~~~SpDG~~l~~~~ 626 (721)
++...+. .|++||+.....+.. .... ....+.+++|+.+|=.||...
T Consensus 143 VVLtsD~-------~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 143 VVLKEDD-------TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp EEEETTS-------CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred EEEecCC-------EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 8887775 899999976432111 1100 012334567777665565544
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.74 E-value=11 Score=35.03 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC--Cc-cceEEcccCC-CCCcceEEccCCCEEEEEEeeCC
Q 004971 458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD--GV-SAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG 533 (721)
Q Consensus 458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~-~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g 533 (721)
....++|+|||...++ .. + .||..+..+.. .. ...+.|-... ..-..+.|.|+|...+. +
T Consensus 42 ~~~~laf~P~G~LYaV-~~--------G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~---- 105 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LN--------D--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S---- 105 (236)
T ss_dssp TCSEEEECTTSCEEEE-ET--------T--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----
T ss_pred cceeEEECCCccEEEE-eC--------C--eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----
Confidence 4557888888874444 32 2 46766653310 00 1223443333 12345778899985555 3
Q ss_pred ceeEEEEECCCCccc----ceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-------eEEe
Q 004971 534 YKNLYIMDAEGGEGY----GLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-------LRKL 601 (721)
Q Consensus 534 ~~~l~~~d~~~g~~~----~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-------~~~l 601 (721)
+..||+++..+.... ....+-...+ ....+.++|||..-++. +. .+|+...-.+. ...+
T Consensus 106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg-------~lyr~~~P~~~~~~wl~~~~~~ 176 (236)
T 1tl2_A 106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ-------QFYKALPPVSNQDNWLARATKI 176 (236)
T ss_dssp TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT-------EEEEECCCSSTTCCHHHHCEEE
T ss_pred CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC-------cEEecCCCCCCCccccccccee
Confidence 478999987432210 0122222222 34678999999844444 43 57765433211 2222
Q ss_pred eecCCCCCcCCeEECCCCCEEEEE
Q 004971 602 IQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 602 ~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
... .......+.|+++|...+..
T Consensus 177 g~~-g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 177 GQG-GWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp ESS-SGGGEEEEEECTTSCEEEEE
T ss_pred ccC-CcceEEEEEECCCCcEEEEe
Confidence 211 22344567788888866554
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.57 E-value=27 Score=41.91 Aligned_cols=175 Identities=10% Similarity=0.113 Sum_probs=92.7
Q ss_pred ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-EEEe-ecCceeeEEcCCCCeEEEEecC
Q 004971 400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVY-FKNAFSTVWDPVREAVVYTSGG 477 (721)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~-~~~~~~~~~spdg~~la~~~~~ 477 (721)
..+.+.++..+... +..+....+.-.+|..+.||.-....|.++|+++... +... ...+..=.|-. .+.|+.++
T Consensus 48 ~~vvIidl~~~~~~-~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis-~~~l~lVT-- 123 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT-- 123 (1630)
T ss_pred ceEEEEECCCCCCc-ccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC-CCeeEEEc--
Confidence 46788888765432 3233445556778888877777788899999987653 2222 33444444543 34566654
Q ss_pred CCCCCCCCcEEEEEEEccCCCCccceEEcccC----CCCCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccc
Q 004971 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTN----GKNNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYG 549 (721)
Q Consensus 478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~ 549 (721)
...+.-|.+..+.. ..+.+..+ ...+.....++|.+|++...-..+ .+.+.+++.+.+.
T Consensus 124 ------~~aVyHW~~~~~s~----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--- 190 (1630)
T 1xi4_A 124 ------DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--- 190 (1630)
T ss_pred ------CCeEEEeccCCCCc----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---
Confidence 35566666643221 22222222 234555688999999998764321 2345555554332
Q ss_pred eEECcCCCcCceee---EEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971 550 LHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595 (721)
Q Consensus 550 ~~~l~~~~~~~~~~---~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~ 595 (721)
...+..+...-... ...+..+.++|+.... .+..|.++++..
T Consensus 191 sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~----~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ----AGGKLHIIEVGT 235 (1630)
T ss_pred chhhhHhHhhhheeccCCCCCCceEEEEEEecC----CCceEEEEecCC
Confidence 12222221110111 1122334455555432 235889988854
No 348
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=80.59 E-value=46 Score=32.76 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
....++++|+++.+++.. ...||+-+-.+|+. -..+. ........++++|+|+.++ ....+ .+++
T Consensus 164 ~~~~~~~~~~~~~~~~g~----~G~~~~S~d~gG~t--W~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G-------~~~~ 229 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSS----RGSFYSTWEPGQTA--WEPHNRTTSRRLHNMGFTPDGRLWM-IVNGG-------KIAF 229 (327)
T ss_dssp CEEEEEECTTSCEEEEET----TSSEEEEECTTCSS--CEEEECCSSSCEEEEEECTTSCEEE-EETTT-------EEEE
T ss_pred ceEEEEEcCCCcEEEEEC----CCcEEEEeCCCCCc--eeECCCCCCCccceeEECCCCCEEE-EeCCc-------eEEE
Confidence 455678899988776543 34677654332332 22222 1223456788899987544 44332 5776
Q ss_pred EecCCCceEEeeecC---CCCCcCCeEECCCCCEEEE
Q 004971 591 IHPNGTGLRKLIQSG---SAGRANHPYFSPDGKSIVF 624 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~---~~~~~~~~~~SpDG~~l~~ 624 (721)
.+.++|+.-.....+ ....+..+.+.++++.++.
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 644444332221111 1123456778888775443
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=78.25 E-value=3.8 Score=43.88 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=44.1
Q ss_pred CcceEEccCCCEEEEEEeeC----------CceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCCEEEEEEccC
Q 004971 513 NAFPSVSPDGKWIVFRSTRT----------GYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGEWIAFASDRD 579 (721)
Q Consensus 513 ~~~~~~SpDg~~l~~~s~~~----------g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~~l~~~~~~~ 579 (721)
...+.|.++|. |+|..+.. +...+|+++..+|+ ++.+.... ...+.++||||++.|++.....
T Consensus 478 PDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe---l~~fl~~P~~aEpnGiafSPD~ktLfV~vQHP 552 (592)
T 4a9v_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGE---IRRFMVGPIGCEVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCC---EEEEEECCTTCEEEEEEECTTSSEEEEEEEST
T ss_pred CCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCe---EEEEEeCCCCccccCCEECCCCCEEEEEEeCC
Confidence 34578999987 66644321 34489999998898 55544322 3458899999999998877653
No 350
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.46 E-value=6.3 Score=36.57 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=57.9
Q ss_pred CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc----ceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCce
Q 004971 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY----GLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSF 586 (721)
Q Consensus 512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~----~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~ 586 (721)
....++|+|||...++ + ...||..+..+.... ..+.|-...+ .-..+.|.|+|...+. .++
T Consensus 42 ~~~~laf~P~G~LYaV-~----~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG------- 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-L----NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKD------- 107 (236)
T ss_dssp TCSEEEECTTSCEEEE-E----TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETT-------
T ss_pred cceeEEECCCccEEEE-e----CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCC-------
Confidence 5567999999984444 3 567999998653210 0233322211 1256889999974444 333
Q ss_pred eEEEEecCCCc-------eEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971 587 EMYLIHPNGTG-------LRKLIQSGSAGRANHPYFSPDGKSIVFT 625 (721)
Q Consensus 587 ~i~~~d~~~~~-------~~~l~~~~~~~~~~~~~~SpDG~~l~~~ 625 (721)
.||+++.-+.. ..++-.. .-..+..+.+.|+|...+..
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe
Confidence 89999863321 1222211 12345778899999855444
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.26 E-value=37 Score=37.77 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCEEEEEEeeCC---ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971 521 DGKWIVFRSTRTG---YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597 (721)
Q Consensus 521 Dg~~l~~~s~~~g---~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~ 597 (721)
+|+.+++...... ...++++|+.+.+-..+..+...... ...+.-.+|+.++++.... .. .+++||+.+.+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~----~~-~v~~yd~~t~~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTE----GP-AMLLYNVTEEI 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCS----SC-SEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCC----CC-CEEEEECCCCc
Confidence 6665555443221 25799999998763222222222221 2223324777666665543 22 89999999987
Q ss_pred eEEeeec---CCCCCcCC-eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC------eEEecc
Q 004971 598 LRKLIQS---GSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD------LKRLTQ 663 (721)
Q Consensus 598 ~~~l~~~---~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~lt~ 663 (721)
-..+... ........ ..+..+...|++........ .....++|+||+.+.. .+.+..
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------TTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------SCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------CeeeCcEEEEEccCCccccceEEEEcCC
Confidence 7666431 11111222 44555534444443321100 0112479999999887 566644
No 352
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=71.81 E-value=1.3e+02 Score=33.56 Aligned_cols=92 Identities=7% Similarity=0.033 Sum_probs=50.1
Q ss_pred ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC------CcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM 588 (721)
Q Consensus 515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i 588 (721)
.+....+|+ |.+... ..|++++..+++ ...+... ...+..+...+++..|.++... .|
T Consensus 150 ~i~~d~~g~-lWigt~----~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~--------Gl 213 (758)
T 3ott_A 150 SIIRTKDNQ-IYVGTY----NGLCRYIPSNGK---FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG--------YL 213 (758)
T ss_dssp EEEECTTCC-EEEEET----TEEEEEETTTTE---EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE--------EE
T ss_pred EEEEcCCCC-EEEEeC----CCHhhCccCCCc---eEEecCCCccccccceeEEEEEECCCCEEEEEECC--------CC
Confidence 334445555 444442 369999988765 3322211 1123455566667766555543 69
Q ss_pred EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971 589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623 (721)
Q Consensus 589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~ 623 (721)
++++..+++....... ....+..+....+|...+
T Consensus 214 ~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp EEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEE
T ss_pred eEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEE
Confidence 9999888765443221 122345566666776443
No 353
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=64.20 E-value=85 Score=33.45 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=45.1
Q ss_pred CEEEEEEeeCCceeEEEEECCCCc-ccceEECcCC-----CcCcee--eEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971 523 KWIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLTEG-----PWSDTM--CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594 (721)
Q Consensus 523 ~~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~~~-----~~~~~~--~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~ 594 (721)
+.+++...+.|...+|.+|+.+.. ++.+-+++.. ...... +.--.+|+++++....-+.......||++|+.
T Consensus 152 rtvLvggmg~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~ 231 (570)
T 3hx6_A 152 HTVLIGSLRAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDME 231 (570)
T ss_dssp EEEEEEECTTSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETT
T ss_pred eEEEEEecCCCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECC
Confidence 446666666666678888776422 1112223211 011122 23335889888877642222356799999999
Q ss_pred CCceEEee
Q 004971 595 GTGLRKLI 602 (721)
Q Consensus 595 ~~~~~~l~ 602 (721)
+|....-+
T Consensus 232 tG~li~~i 239 (570)
T 3hx6_A 232 TGAITRKL 239 (570)
T ss_dssp TCCEEEEE
T ss_pred CCceEEEE
Confidence 99865543
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=64.13 E-value=11 Score=40.71 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=41.9
Q ss_pred cceEEccCCCEEEEEEee---------CCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEcc
Q 004971 514 AFPSVSPDGKWIVFRSTR---------TGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDR 578 (721)
Q Consensus 514 ~~~~~SpDg~~l~~~s~~---------~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~ 578 (721)
-.++|+|+|+.++..... .+...++..+..+|+ +.++... ...++.+.|+||++.|++....
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~---~~rf~~~P~gaE~TG~~fspDg~tlfvniQH 551 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE---IRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC---EEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe---EEEEEeCCCCccCcCeeECCCCCEEEEEEEC
Confidence 457999999844433321 135678899998888 4444322 2346789999999998776543
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=62.55 E-value=65 Score=32.02 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=17.8
Q ss_pred CCEEEEEEeeCCceeEEEEECCCCcc
Q 004971 522 GKWIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 522 g~~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
+..+++.+. +.+++.+|+.+|+.
T Consensus 111 ~g~Vy~Gs~---~g~l~ald~~tG~~ 133 (339)
T 2be1_A 111 DEKVYTGSM---RTIMYTINMLNGEI 133 (339)
T ss_dssp CEEEEECEE---EEEEEEEETTTCCE
T ss_pred CCEEEEEec---CCEEEEEECCCCcE
Confidence 445666665 78999999999985
No 356
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=46.77 E-value=43 Score=33.33 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=15.0
Q ss_pred EEEEEEeeCCceeEEEEECCCCcc
Q 004971 524 WIVFRSTRTGYKNLYIMDAEGGEG 547 (721)
Q Consensus 524 ~l~~~s~~~g~~~l~~~d~~~g~~ 547 (721)
.+++.+. +..|+.+|.++|+.
T Consensus 12 ~V~v~t~---dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 12 ILIAADV---EGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEET---TSCEEEEETTTTEE
T ss_pred EEEEEeC---CCeEEEEECCCCcE
Confidence 4555555 67888889888874
No 357
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=27.38 E-value=5.9e+02 Score=27.09 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=43.2
Q ss_pred cCCCEEEEEEee----CCceeEEEEECCCCcccceEECcCCC-----cCceeeE-EccCC----CEEEEEEccCCCCCCc
Q 004971 520 PDGKWIVFRSTR----TGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCN-WSPDG----EWIAFASDRDNPGSGS 585 (721)
Q Consensus 520 pDg~~l~~~s~~----~g~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~~-~SpDG----~~l~~~~~~~~~~~~~ 585 (721)
.+|+++++.... .+...||++|+++|+. +..+.... .....++ +..|+ ..+++....+
T Consensus 204 ~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~l--i~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~G------ 275 (570)
T 3hx6_A 204 HNGKWAVVTGNGYSSMNDKAALLIIDMETGAI--TRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQG------ 275 (570)
T ss_dssp TTSSEEEEEECCBSCTTCCEEEEEEETTTCCE--EEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTS------
T ss_pred cCCCEEEEEccccCCCCCccEEEEEECCCCce--EEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCC------
Confidence 478988877653 2356899999999986 55543211 1122333 33443 3566666554
Q ss_pred eeEEEEecCCCc
Q 004971 586 FEMYLIHPNGTG 597 (721)
Q Consensus 586 ~~i~~~d~~~~~ 597 (721)
.||++|+.+..
T Consensus 276 -nlWRfDl~~~~ 286 (570)
T 3hx6_A 276 -NLWRFDLIAGK 286 (570)
T ss_dssp -EEEEEECSCSS
T ss_pred -cEEEEEcCCCC
Confidence 89999997654
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.93 E-value=4.9e+02 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=23.9
Q ss_pred EEEEEeCCcEEEEECCC-C-ceEEEe----ecCceeeEEcC-CCCeEEEEe
Q 004971 432 RIAFVEFPGVYVVNSDG-S-NRRQVY----FKNAFSTVWDP-VREAVVYTS 475 (721)
Q Consensus 432 ~la~~~~~~l~v~d~~~-g-~~~~l~----~~~~~~~~~sp-dg~~la~~~ 475 (721)
.|.+.....+++++.+. + ..+.+. ...+..+.+.| +...|++..
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~ 74 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA 74 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe
Confidence 44444555677776543 3 333331 23466788888 344555544
No 359
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=23.02 E-value=5.3e+02 Score=25.71 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=64.4
Q ss_pred ccCCCEEEEEEeeCCce--eEEEEECCCCcccceEECc---CCCcCceee--EE-ccCCCEEEEEEccCCCCCCceeEEE
Q 004971 519 SPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLT---EGPWSDTMC--NW-SPDGEWIAFASDRDNPGSGSFEMYL 590 (721)
Q Consensus 519 SpDg~~l~~~s~~~g~~--~l~~~d~~~g~~~~~~~l~---~~~~~~~~~--~~-SpDG~~l~~~~~~~~~~~~~~~i~~ 590 (721)
+.+.++|++...+ .. .|.++|+++++. ++++. .++..+..+ .+ -.+-..|++..... ..|++
T Consensus 36 ~~~k~yL~~~N~~--~~~~~i~~iDL~~~kl--~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~------~~i~l 105 (369)
T 3s9j_A 36 ENGKEYLHFENTQ--KSLYDIVIFDIENQQI--AKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNI------SRLSS 105 (369)
T ss_dssp ETTEEEEEEEECS--TTCCEEEEEETTTTEE--EEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGG------TEEEE
T ss_pred cCCcEEEEEeCCC--CCcCcEEEEECCCCce--eeeeccccCCCCCcccceeeEEecCCCEEEEEeCCc------ceEEE
Confidence 4555666666653 34 899999999885 43443 232222233 12 23334455555331 27999
Q ss_pred EecCCCceEEeeecCCCC---------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971 591 IHPNGTGLRKLIQSGSAG---------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL 661 (721)
Q Consensus 591 ~d~~~~~~~~l~~~~~~~---------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 661 (721)
+|..+............. ....+.+..+++.+ +....... ......+....-++.+|+.+++.+.+
T Consensus 106 ~n~~G~~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~----~~~~~~~~k~~~~a~~dl~~~~~~~l 180 (369)
T 3s9j_A 106 INSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIF-LRQEILKP----DMKKEDWPRTHMFASQDLRTGEVKWI 180 (369)
T ss_dssp ECTTCCEEEEEECCCTTSCCCCCCCBTTTTBCCEEETTEEE-EECCCSSS----SCCGGGGGGSEEEEEEETTTCCEEEE
T ss_pred ECCCceEEEEEecCCCccccccccccccccCcceecCceEE-Eecccccc----ccchhhhccCceEEEEECCCCcEEEe
Confidence 998776555542211111 11234444444433 32221100 00001122233699999999988744
Q ss_pred c
Q 004971 662 T 662 (721)
Q Consensus 662 t 662 (721)
.
T Consensus 181 ~ 181 (369)
T 3s9j_A 181 P 181 (369)
T ss_dssp E
T ss_pred e
Confidence 3
Done!