Query 004972
Match_columns 721
No_of_seqs 578 out of 4674
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 15:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 1E-130 2E-135 1139.4 76.6 696 1-708 10-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 4E-129 8E-134 1124.4 76.6 694 1-708 1-714 (714)
3 PRK11730 fadB multifunctional 100.0 3E-127 5E-132 1112.5 78.5 695 1-709 1-715 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 3E-127 7E-132 1109.2 76.3 687 6-708 2-699 (699)
5 PRK11154 fadJ multifunctional 100.0 1E-126 2E-131 1107.8 77.3 688 4-709 5-707 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.2E-74 2.6E-79 644.0 45.2 402 304-709 4-503 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.7E-73 5.8E-78 635.6 45.8 404 302-709 4-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 2.1E-65 4.6E-70 525.6 30.9 280 304-583 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 4.7E-63 1E-67 466.2 19.4 280 303-582 9-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 2.1E-59 4.6E-64 489.5 33.0 280 302-581 2-286 (286)
11 KOG1683 Hydroxyacyl-CoA dehydr 100.0 4.2E-61 9E-66 488.3 18.9 378 316-709 1-380 (380)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 2.5E-55 5.3E-60 461.5 33.2 279 304-582 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 3.1E-54 6.7E-59 453.6 33.9 281 305-585 1-284 (288)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 3.1E-54 6.6E-59 454.4 33.0 278 304-581 2-290 (291)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 4.2E-54 9.2E-59 451.5 32.5 278 304-581 2-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 1.2E-53 2.5E-58 451.1 34.3 282 304-585 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 2.7E-53 5.7E-58 447.7 33.5 281 304-584 3-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 9.5E-52 2.1E-56 435.8 31.6 268 316-583 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 9.1E-52 2E-56 433.5 26.6 277 303-583 5-298 (321)
20 KOG1680 Enoyl-CoA hydratase [L 100.0 1.2E-48 2.6E-53 382.1 21.9 241 12-292 44-288 (290)
21 PRK06495 enoyl-CoA hydratase; 100.0 1.1E-47 2.5E-52 396.1 26.1 253 1-291 1-254 (257)
22 PRK08139 enoyl-CoA hydratase; 100.0 1.4E-47 2.9E-52 397.0 26.3 253 1-291 8-263 (266)
23 PRK05862 enoyl-CoA hydratase; 100.0 1.6E-47 3.4E-52 395.4 26.4 250 1-291 1-254 (257)
24 PRK07658 enoyl-CoA hydratase; 100.0 1.3E-47 2.8E-52 396.4 25.6 249 5-291 3-254 (257)
25 PRK05980 enoyl-CoA hydratase; 100.0 2.3E-47 4.9E-52 395.1 25.8 251 1-290 1-259 (260)
26 PRK06143 enoyl-CoA hydratase; 100.0 2.7E-47 5.9E-52 392.5 26.2 250 1-288 3-256 (256)
27 PRK07938 enoyl-CoA hydratase; 100.0 2E-47 4.4E-52 391.8 24.5 247 6-289 3-249 (249)
28 PRK05995 enoyl-CoA hydratase; 100.0 6.1E-47 1.3E-51 392.3 27.6 253 1-291 1-259 (262)
29 PRK06142 enoyl-CoA hydratase; 100.0 3.1E-47 6.7E-52 396.5 25.2 253 1-291 2-270 (272)
30 PRK09076 enoyl-CoA hydratase; 100.0 4E-47 8.6E-52 392.3 25.7 248 5-291 4-255 (258)
31 PRK08150 enoyl-CoA hydratase; 100.0 5.3E-47 1.1E-51 390.1 26.3 249 4-293 2-254 (255)
32 PRK05809 3-hydroxybutyryl-CoA 100.0 4.9E-47 1.1E-51 392.6 25.7 252 1-291 1-257 (260)
33 PRK08140 enoyl-CoA hydratase; 100.0 6.7E-47 1.5E-51 392.0 26.4 252 1-291 1-259 (262)
34 PRK05674 gamma-carboxygeranoyl 100.0 8.1E-47 1.8E-51 391.0 26.4 255 1-292 1-262 (265)
35 PRK09674 enoyl-CoA hydratase-i 100.0 1.4E-46 3E-51 387.5 26.7 248 1-291 1-252 (255)
36 PRK06563 enoyl-CoA hydratase; 100.0 1.2E-46 2.5E-51 388.4 25.5 248 6-291 1-252 (255)
37 PRK08138 enoyl-CoA hydratase; 100.0 2.6E-46 5.7E-51 386.9 27.0 248 4-291 7-258 (261)
38 PRK05981 enoyl-CoA hydratase; 100.0 1.8E-46 3.9E-51 389.7 25.8 253 1-291 1-263 (266)
39 PRK07657 enoyl-CoA hydratase; 100.0 1.9E-46 4.1E-51 388.0 25.8 252 1-291 1-257 (260)
40 PRK09245 enoyl-CoA hydratase; 100.0 2.3E-46 5E-51 388.9 26.4 252 1-291 1-263 (266)
41 PLN02888 enoyl-CoA hydratase 100.0 4.3E-46 9.3E-51 385.3 28.1 250 3-293 8-263 (265)
42 PRK07468 enoyl-CoA hydratase; 100.0 3.3E-46 7.1E-51 386.4 26.9 253 1-291 1-259 (262)
43 PLN02600 enoyl-CoA hydratase 100.0 2.1E-46 4.6E-51 385.0 24.9 242 12-291 2-248 (251)
44 PRK03580 carnitinyl-CoA dehydr 100.0 3.3E-46 7.2E-51 386.1 26.4 250 1-291 1-258 (261)
45 TIGR02280 PaaB1 phenylacetate 100.0 2.5E-46 5.5E-51 386.1 25.3 247 6-291 1-253 (256)
46 PRK07799 enoyl-CoA hydratase; 100.0 4.1E-46 8.9E-51 386.1 26.8 250 3-291 4-260 (263)
47 PRK06210 enoyl-CoA hydratase; 100.0 3.9E-46 8.5E-51 388.4 26.5 253 1-291 2-269 (272)
48 PRK06494 enoyl-CoA hydratase; 100.0 3.7E-46 8E-51 385.3 26.0 249 1-291 1-256 (259)
49 PRK07511 enoyl-CoA hydratase; 100.0 4.6E-46 1E-50 385.3 26.5 252 1-291 1-258 (260)
50 PRK08258 enoyl-CoA hydratase; 100.0 4.4E-46 9.5E-51 388.3 26.1 249 5-291 18-274 (277)
51 PRK06127 enoyl-CoA hydratase; 100.0 4.7E-46 1E-50 386.4 25.8 251 3-291 10-266 (269)
52 PRK09120 p-hydroxycinnamoyl Co 100.0 5.4E-46 1.2E-50 386.6 26.1 248 3-288 7-264 (275)
53 PRK08252 enoyl-CoA hydratase; 100.0 6.5E-46 1.4E-50 382.4 26.5 247 1-291 1-251 (254)
54 PLN03214 probable enoyl-CoA hy 100.0 5.7E-46 1.2E-50 386.4 25.8 254 3-293 10-270 (278)
55 PRK06688 enoyl-CoA hydratase; 100.0 8E-46 1.7E-50 383.7 26.6 251 1-291 1-256 (259)
56 PLN02664 enoyl-CoA hydratase/d 100.0 5.9E-46 1.3E-50 386.9 24.3 243 12-291 15-272 (275)
57 PRK06130 3-hydroxybutyryl-CoA 100.0 6.3E-45 1.4E-49 387.8 32.4 276 304-584 3-285 (311)
58 TIGR01929 menB naphthoate synt 100.0 8.9E-46 1.9E-50 382.2 24.7 250 4-291 2-256 (259)
59 TIGR03210 badI 2-ketocyclohexa 100.0 1.5E-45 3.3E-50 379.8 26.0 249 3-292 1-254 (256)
60 PRK07260 enoyl-CoA hydratase; 100.0 2.1E-45 4.5E-50 379.1 26.8 248 3-288 1-255 (255)
61 PRK07659 enoyl-CoA hydratase; 100.0 1.3E-45 2.7E-50 381.5 25.1 248 4-291 6-257 (260)
62 PRK11423 methylmalonyl-CoA dec 100.0 1.4E-45 3E-50 380.9 24.9 250 1-291 1-258 (261)
63 PRK12478 enoyl-CoA hydratase; 100.0 2.8E-45 6.1E-50 384.6 26.6 252 1-292 2-279 (298)
64 PRK08260 enoyl-CoA hydratase; 100.0 3.4E-45 7.3E-50 385.0 26.2 255 1-293 1-277 (296)
65 PRK07396 dihydroxynaphthoic ac 100.0 4.4E-45 9.6E-50 379.7 26.3 250 3-292 12-267 (273)
66 PRK08259 enoyl-CoA hydratase; 100.0 4.4E-45 9.6E-50 375.6 25.9 245 1-288 1-249 (254)
67 PRK06144 enoyl-CoA hydratase; 100.0 2.8E-45 6E-50 379.2 24.5 247 3-291 7-259 (262)
68 PRK06023 enoyl-CoA hydratase; 100.0 4.8E-45 1E-49 375.3 26.0 244 1-286 1-251 (251)
69 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.8E-45 1.1E-49 374.4 25.9 242 6-291 3-248 (251)
70 PRK05864 enoyl-CoA hydratase; 100.0 5.9E-45 1.3E-49 379.6 26.7 251 4-291 9-272 (276)
71 PRK05870 enoyl-CoA hydratase; 100.0 4.3E-45 9.2E-50 375.2 25.0 244 1-286 1-249 (249)
72 PRK07327 enoyl-CoA hydratase; 100.0 6.2E-45 1.3E-49 377.8 25.9 248 3-291 10-265 (268)
73 PRK06190 enoyl-CoA hydratase; 100.0 1.7E-44 3.7E-49 371.2 27.2 247 1-288 1-254 (258)
74 PRK07112 polyketide biosynthes 100.0 3E-44 6.6E-49 369.9 25.8 248 1-291 1-252 (255)
75 PLN02921 naphthoate synthase 100.0 3.8E-44 8.2E-49 378.4 26.9 251 3-292 64-321 (327)
76 PRK07509 enoyl-CoA hydratase; 100.0 3.1E-44 6.7E-49 372.3 25.8 247 4-291 3-260 (262)
77 COG1024 CaiD Enoyl-CoA hydrata 100.0 4.1E-44 8.9E-49 370.1 25.2 249 2-290 3-256 (257)
78 PRK06072 enoyl-CoA hydratase; 100.0 7.2E-44 1.6E-48 365.6 25.4 240 6-291 2-245 (248)
79 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.2E-44 4.7E-49 370.2 20.1 241 7-286 1-245 (245)
80 PRK07854 enoyl-CoA hydratase; 100.0 1.2E-43 2.5E-48 362.7 24.1 235 6-291 2-240 (243)
81 PRK07827 enoyl-CoA hydratase; 100.0 1.6E-43 3.5E-48 366.1 25.2 247 4-291 6-258 (260)
82 PRK07110 polyketide biosynthes 100.0 2.7E-43 5.8E-48 361.6 25.9 242 1-284 2-247 (249)
83 PRK05617 3-hydroxyisobutyryl-C 100.0 1.3E-43 2.8E-48 378.4 24.0 283 4-292 3-324 (342)
84 PRK08321 naphthoate synthase; 100.0 7.9E-43 1.7E-47 367.1 26.2 249 5-291 24-295 (302)
85 PLN02874 3-hydroxyisobutyryl-C 100.0 1.1E-42 2.4E-47 375.5 22.7 285 3-293 10-338 (379)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 4E-42 8.8E-47 383.7 21.6 252 3-292 259-546 (550)
87 PRK08290 enoyl-CoA hydratase; 100.0 1E-41 2.3E-46 356.2 23.2 237 1-275 1-262 (288)
88 TIGR03222 benzo_boxC benzoyl-C 100.0 5E-42 1.1E-46 381.3 22.0 251 3-291 255-541 (546)
89 KOG1679 Enoyl-CoA hydratase [L 100.0 2.1E-42 4.6E-47 322.4 11.9 242 12-291 38-288 (291)
90 PRK05869 enoyl-CoA hydratase; 100.0 2.9E-41 6.3E-46 339.7 20.2 199 4-204 3-208 (222)
91 PLN02157 3-hydroxyisobutyryl-C 100.0 7.2E-41 1.6E-45 360.0 23.1 245 4-289 37-291 (401)
92 PRK08272 enoyl-CoA hydratase; 100.0 3E-40 6.5E-45 348.5 24.1 202 2-205 8-234 (302)
93 PLN02988 3-hydroxyisobutyryl-C 100.0 2.5E-39 5.4E-44 347.3 28.1 288 2-293 7-338 (381)
94 PRK08788 enoyl-CoA hydratase; 100.0 1.4E-39 3E-44 337.5 24.8 245 4-287 15-277 (287)
95 PRK06213 enoyl-CoA hydratase; 100.0 5.7E-40 1.2E-44 333.1 20.0 197 1-204 1-201 (229)
96 PRK06129 3-hydroxyacyl-CoA deh 100.0 2.8E-38 6.1E-43 335.4 30.8 263 305-567 2-275 (308)
97 PLN02851 3-hydroxyisobutyryl-C 100.0 1.4E-37 3.1E-42 334.1 26.8 278 4-285 42-361 (407)
98 TIGR03200 dearomat_oah 6-oxocy 100.0 1.1E-37 2.3E-42 324.6 22.4 188 15-203 38-244 (360)
99 PLN02267 enoyl-CoA hydratase/i 100.0 7.7E-38 1.7E-42 318.5 17.8 195 6-202 2-204 (239)
100 KOG1681 Enoyl-CoA isomerase [L 100.0 3.6E-38 7.7E-43 297.1 12.9 251 3-290 18-287 (292)
101 PF02737 3HCDH_N: 3-hydroxyacy 100.0 2E-36 4.3E-41 294.3 20.4 180 307-486 1-180 (180)
102 COG0447 MenB Dihydroxynaphthoi 100.0 1.2E-36 2.6E-41 284.6 13.6 253 3-292 17-276 (282)
103 PRK07531 bifunctional 3-hydrox 100.0 5.5E-35 1.2E-39 328.2 27.2 243 305-551 4-254 (495)
104 KOG0016 Enoyl-CoA hydratase/is 100.0 7.3E-35 1.6E-39 282.8 23.6 249 1-287 4-263 (266)
105 KOG1682 Enoyl-CoA isomerase [L 100.0 1.4E-34 3.1E-39 267.8 16.4 246 8-291 36-284 (287)
106 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.6E-34 5.7E-39 321.0 21.4 201 1-203 12-236 (550)
107 TIGR03222 benzo_boxC benzoyl-C 100.0 2.8E-34 6.1E-39 319.5 20.8 199 3-203 10-232 (546)
108 KOG2305 3-hydroxyacyl-CoA dehy 100.0 1.6E-34 3.4E-39 273.2 14.6 230 304-536 2-242 (313)
109 cd06558 crotonase-like Crotona 100.0 3.4E-34 7.3E-39 284.5 17.3 189 6-196 1-194 (195)
110 KOG1684 Enoyl-CoA hydratase [L 100.0 3.1E-29 6.6E-34 252.9 20.5 288 4-293 38-367 (401)
111 PRK08268 3-hydroxy-acyl-CoA de 99.9 3.4E-26 7.4E-31 256.4 19.5 160 410-569 338-500 (507)
112 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1E-24 2.2E-29 190.7 9.0 94 488-581 1-97 (97)
113 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 2.5E-21 5.3E-26 216.6 17.3 119 451-569 378-499 (503)
114 PF00725 3HCDH: 3-hydroxyacyl- 99.8 2E-19 4.3E-24 157.2 7.8 89 618-710 1-97 (97)
115 KOG2304 3-hydroxyacyl-CoA dehy 99.8 2.2E-18 4.8E-23 164.0 9.4 92 616-711 198-298 (298)
116 COG2084 MmsB 3-hydroxyisobutyr 99.7 1.2E-17 2.6E-22 170.9 13.5 189 306-523 1-211 (286)
117 cd07014 S49_SppA Signal peptid 99.7 1.2E-17 2.5E-22 162.7 10.8 141 31-189 22-175 (177)
118 cd07020 Clp_protease_NfeD_1 No 99.7 6.3E-17 1.4E-21 158.7 11.7 147 16-188 2-171 (187)
119 TIGR01505 tartro_sem_red 2-hyd 99.7 1.3E-16 2.9E-21 168.4 13.6 187 307-523 1-209 (291)
120 PRK09260 3-hydroxybutyryl-CoA 99.7 6.3E-17 1.4E-21 170.4 10.8 94 616-713 183-283 (288)
121 PRK11559 garR tartronate semia 99.7 6.7E-16 1.5E-20 163.5 17.8 189 305-523 2-212 (296)
122 PRK07819 3-hydroxybutyryl-CoA 99.7 1.5E-16 3.3E-21 166.6 10.5 91 616-710 188-286 (286)
123 PRK05808 3-hydroxybutyryl-CoA 99.7 1.8E-16 3.9E-21 166.5 10.9 92 615-710 183-282 (282)
124 PRK07417 arogenate dehydrogena 99.7 7.2E-15 1.6E-19 154.0 20.9 154 307-485 2-167 (279)
125 COG1250 FadB 3-hydroxyacyl-CoA 99.6 3.7E-16 8E-21 161.6 9.6 94 615-712 183-285 (307)
126 PLN02545 3-hydroxybutyryl-CoA 99.6 8.9E-16 1.9E-20 162.3 11.3 94 616-713 185-286 (295)
127 PRK08293 3-hydroxybutyryl-CoA 99.6 2.1E-15 4.5E-20 158.8 10.6 92 616-711 187-287 (287)
128 PLN02688 pyrroline-5-carboxyla 99.6 3.7E-14 7.9E-19 147.9 19.5 184 306-519 1-201 (266)
129 PRK07530 3-hydroxybutyryl-CoA 99.6 2.5E-15 5.5E-20 158.6 10.8 94 616-713 185-286 (292)
130 PRK06035 3-hydroxyacyl-CoA deh 99.6 3.2E-15 6.9E-20 157.7 9.4 91 616-710 187-290 (291)
131 PRK11199 tyrA bifunctional cho 99.6 5.4E-14 1.2E-18 152.8 18.5 171 304-515 97-277 (374)
132 PRK08269 3-hydroxybutyryl-CoA 99.6 5.8E-15 1.3E-19 156.3 10.1 95 617-712 182-284 (314)
133 PRK15461 NADH-dependent gamma- 99.5 1.1E-13 2.4E-18 146.1 16.0 186 306-519 2-206 (296)
134 PRK11880 pyrroline-5-carboxyla 99.5 3.6E-13 7.9E-18 140.4 19.2 188 305-519 2-202 (267)
135 PRK07679 pyrroline-5-carboxyla 99.5 2.2E-13 4.8E-18 142.8 17.4 188 305-519 3-206 (279)
136 PRK12491 pyrroline-5-carboxyla 99.5 4.8E-13 1E-17 139.0 19.5 182 306-519 3-204 (272)
137 cd07019 S49_SppA_1 Signal pept 99.5 7.4E-14 1.6E-18 139.8 12.5 156 14-188 1-208 (211)
138 PRK06130 3-hydroxybutyryl-CoA 99.5 3.5E-14 7.6E-19 151.4 10.6 97 617-714 183-286 (311)
139 KOG0409 Predicted dehydrogenas 99.5 5.7E-13 1.2E-17 133.7 17.9 189 304-519 34-241 (327)
140 PRK11154 fadJ multifunctional 99.5 4.1E-14 8.9E-19 165.7 10.7 92 616-713 491-589 (708)
141 PRK08507 prephenate dehydrogen 99.5 1.2E-12 2.7E-17 136.9 20.3 151 307-485 2-168 (275)
142 PF03446 NAD_binding_2: NAD bi 99.5 3.6E-14 7.9E-19 136.3 7.8 148 305-485 1-163 (163)
143 TIGR02440 FadJ fatty oxidation 99.5 5.2E-14 1.1E-18 164.4 10.6 92 616-713 486-584 (699)
144 PRK06545 prephenate dehydrogen 99.5 5.8E-13 1.3E-17 144.4 17.2 221 306-550 1-249 (359)
145 TIGR01692 HIBADH 3-hydroxyisob 99.5 2.9E-13 6.3E-18 142.6 14.2 181 310-523 1-206 (288)
146 PRK15059 tartronate semialdehy 99.5 1.2E-12 2.5E-17 137.8 15.7 182 307-519 2-204 (292)
147 PRK08655 prephenate dehydrogen 99.5 2.4E-12 5.2E-17 142.6 18.9 154 306-484 1-162 (437)
148 PRK11064 wecC UDP-N-acetyl-D-m 99.5 1.3E-12 2.8E-17 144.0 16.8 198 304-519 2-247 (415)
149 PTZ00142 6-phosphogluconate de 99.4 1.2E-12 2.7E-17 145.1 16.4 192 305-521 1-220 (470)
150 COG0287 TyrA Prephenate dehydr 99.4 1.7E-12 3.7E-17 134.1 16.2 156 305-484 3-170 (279)
151 PLN02350 phosphogluconate dehy 99.4 1.1E-12 2.4E-17 145.5 15.6 193 304-519 5-224 (493)
152 TIGR03026 NDP-sugDHase nucleot 99.4 1.6E-12 3.5E-17 143.9 16.2 201 307-519 2-243 (411)
153 TIGR02441 fa_ox_alpha_mit fatt 99.4 5.1E-13 1.1E-17 156.5 11.2 101 469-569 627-734 (737)
154 PRK11730 fadB multifunctional 99.4 4.2E-13 9.1E-18 157.3 10.2 93 615-712 493-594 (715)
155 PRK07502 cyclohexadienyl dehyd 99.4 4E-12 8.7E-17 135.2 16.6 157 304-484 5-178 (307)
156 COG1004 Ugd Predicted UDP-gluc 99.4 6.6E-12 1.4E-16 131.4 17.6 198 306-519 1-241 (414)
157 TIGR00872 gnd_rel 6-phosphoglu 99.4 7.5E-12 1.6E-16 132.4 18.2 185 307-519 2-208 (298)
158 PRK12490 6-phosphogluconate de 99.4 2.6E-12 5.7E-17 136.0 14.6 182 307-520 2-210 (299)
159 PRK09599 6-phosphogluconate de 99.4 3.3E-12 7.2E-17 135.4 14.8 182 307-520 2-211 (301)
160 PLN02256 arogenate dehydrogena 99.4 5.3E-12 1.1E-16 132.9 15.9 153 305-484 36-203 (304)
161 COG0677 WecC UDP-N-acetyl-D-ma 99.4 8E-12 1.7E-16 130.1 16.8 203 306-519 10-250 (436)
162 TIGR02437 FadB fatty oxidation 99.4 6.7E-13 1.4E-17 155.2 9.9 92 615-711 493-593 (714)
163 cd00394 Clp_protease_like Case 99.4 1.2E-12 2.7E-17 125.5 9.7 132 28-180 8-161 (161)
164 PRK15057 UDP-glucose 6-dehydro 99.4 4.7E-12 1E-16 137.9 14.9 197 307-519 2-232 (388)
165 PRK12557 H(2)-dependent methyl 99.4 2.8E-11 6E-16 129.3 20.0 205 316-543 31-259 (342)
166 PRK06928 pyrroline-5-carboxyla 99.4 2E-11 4.4E-16 127.6 18.4 153 305-482 1-160 (277)
167 TIGR00705 SppA_67K signal pept 99.4 3.4E-12 7.4E-17 145.6 12.9 167 12-200 307-524 (584)
168 COG0345 ProC Pyrroline-5-carbo 99.4 3.1E-11 6.7E-16 122.9 18.2 182 305-519 1-201 (266)
169 cd07022 S49_Sppa_36K_type Sign 99.3 5.8E-12 1.3E-16 126.4 11.6 152 14-188 1-211 (214)
170 PRK15182 Vi polysaccharide bio 99.3 1.4E-11 3E-16 135.8 14.5 204 306-523 7-248 (425)
171 TIGR00873 gnd 6-phosphoglucona 99.3 1.4E-11 3.1E-16 136.8 14.6 190 307-520 1-216 (467)
172 PRK07680 late competence prote 99.3 7E-11 1.5E-15 123.5 18.4 182 307-519 2-202 (273)
173 PRK00094 gpsA NAD(P)H-dependen 99.3 5.4E-11 1.2E-15 127.8 18.0 197 305-518 1-238 (325)
174 PRK08818 prephenate dehydrogen 99.3 2.1E-11 4.6E-16 130.7 14.4 137 306-484 5-154 (370)
175 cd07023 S49_Sppa_N_C Signal pe 99.3 9.2E-12 2E-16 124.6 10.8 150 15-187 2-204 (208)
176 PLN02858 fructose-bisphosphate 99.3 2.3E-11 5E-16 150.6 16.6 186 306-523 5-217 (1378)
177 PRK05479 ketol-acid reductoiso 99.3 8.3E-11 1.8E-15 123.8 17.6 185 306-516 18-225 (330)
178 PLN02353 probable UDP-glucose 99.3 1.6E-10 3.4E-15 128.6 19.3 202 305-519 1-251 (473)
179 PRK06476 pyrroline-5-carboxyla 99.3 1.3E-10 2.8E-15 120.5 17.3 179 307-519 2-193 (258)
180 cd07016 S14_ClpP_1 Caseinolyti 99.3 1.2E-11 2.6E-16 118.5 8.7 126 31-180 15-160 (160)
181 cd05297 GH4_alpha_glucosidase_ 99.3 8.7E-13 1.9E-17 145.6 0.2 160 307-480 2-185 (423)
182 PRK07634 pyrroline-5-carboxyla 99.3 2.2E-10 4.8E-15 117.9 18.1 188 305-519 4-206 (245)
183 TIGR00706 SppA_dom signal pept 99.3 5.2E-11 1.1E-15 118.9 12.9 151 15-192 2-204 (207)
184 COG0240 GpsA Glycerol-3-phosph 99.2 1.5E-11 3.2E-16 127.4 8.5 170 305-488 1-181 (329)
185 PLN02858 fructose-bisphosphate 99.2 1.4E-10 3.1E-15 143.6 18.7 190 304-523 323-537 (1378)
186 TIGR00465 ilvC ketol-acid redu 99.2 2.4E-10 5.3E-15 120.6 16.6 202 306-538 4-231 (314)
187 PRK08229 2-dehydropantoate 2-r 99.2 5.6E-10 1.2E-14 120.8 19.7 171 305-488 2-180 (341)
188 PTZ00431 pyrroline carboxylate 99.2 6E-10 1.3E-14 115.5 17.9 145 306-482 4-153 (260)
189 TIGR01915 npdG NADPH-dependent 99.2 4.4E-10 9.4E-15 113.5 15.6 163 306-485 1-189 (219)
190 PRK14806 bifunctional cyclohex 99.2 3.8E-10 8.2E-15 134.5 17.1 156 305-484 3-176 (735)
191 PRK14618 NAD(P)H-dependent gly 99.2 2.1E-10 4.6E-15 123.2 12.3 165 305-487 4-180 (328)
192 PLN02712 arogenate dehydrogena 99.1 6.1E-10 1.3E-14 129.1 15.9 154 304-484 368-536 (667)
193 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 5.5E-11 1.2E-15 113.4 5.6 105 307-423 1-106 (157)
194 PRK14619 NAD(P)H-dependent gly 99.1 4.2E-09 9.1E-14 112.1 20.0 167 306-515 5-211 (308)
195 cd07018 S49_SppA_67K_type Sign 99.1 5.1E-10 1.1E-14 113.0 11.2 143 27-189 25-219 (222)
196 PTZ00082 L-lactate dehydrogena 99.1 3.1E-10 6.8E-15 120.6 8.9 126 305-442 6-153 (321)
197 PF02153 PDH: Prephenate dehyd 99.1 1.6E-09 3.6E-14 112.0 13.8 140 320-483 1-156 (258)
198 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 8.2E-10 1.8E-14 107.9 9.7 114 306-426 1-125 (185)
199 COG2085 Predicted dinucleotide 99.0 5.6E-09 1.2E-13 101.3 14.7 155 305-485 1-180 (211)
200 PLN02712 arogenate dehydrogena 99.0 5.6E-09 1.2E-13 121.1 17.4 153 305-484 52-219 (667)
201 cd01339 LDH-like_MDH L-lactate 99.0 5.6E-10 1.2E-14 118.3 8.1 122 308-441 1-139 (300)
202 PRK06223 malate dehydrogenase; 99.0 1E-09 2.2E-14 116.9 9.5 125 305-441 2-143 (307)
203 PRK12439 NAD(P)H-dependent gly 99.0 5.6E-09 1.2E-13 112.6 14.4 179 303-495 5-194 (341)
204 PTZ00117 malate dehydrogenase; 99.0 1.4E-09 3E-14 115.9 9.3 125 306-442 6-147 (319)
205 PRK09287 6-phosphogluconate de 99.0 7.9E-09 1.7E-13 114.5 15.2 177 316-520 1-208 (459)
206 TIGR01724 hmd_rel H2-forming N 99.0 7.1E-08 1.5E-12 99.3 20.1 147 316-483 31-192 (341)
207 PRK07066 3-hydroxybutyryl-CoA 98.9 5.4E-10 1.2E-14 118.1 4.7 70 616-686 186-256 (321)
208 cd07021 Clp_protease_NfeD_like 98.9 8.3E-09 1.8E-13 99.8 12.4 146 16-187 2-176 (178)
209 PF03807 F420_oxidored: NADP o 98.9 2.5E-09 5.4E-14 93.0 7.4 89 307-421 1-95 (96)
210 PF10727 Rossmann-like: Rossma 98.9 6E-09 1.3E-13 94.6 9.4 114 306-443 11-127 (127)
211 TIGR03376 glycerol3P_DH glycer 98.8 1.2E-08 2.5E-13 109.1 10.0 108 307-426 1-122 (342)
212 PTZ00345 glycerol-3-phosphate 98.8 1.3E-08 2.8E-13 109.5 10.3 167 306-488 12-206 (365)
213 PRK14620 NAD(P)H-dependent gly 98.8 6.5E-08 1.4E-12 104.0 15.3 175 307-498 2-192 (326)
214 PRK12921 2-dehydropantoate 2-r 98.8 4.9E-08 1.1E-12 103.9 13.7 173 306-493 1-185 (305)
215 COG1023 Gnd Predicted 6-phosph 98.8 1.8E-07 4E-12 91.1 15.6 183 306-519 1-209 (300)
216 PRK06249 2-dehydropantoate 2-r 98.8 6.5E-07 1.4E-11 95.6 21.1 178 303-495 3-196 (313)
217 TIGR01763 MalateDH_bact malate 98.7 3E-08 6.5E-13 104.9 9.1 123 306-441 2-142 (305)
218 PRK06522 2-dehydropantoate 2-r 98.7 1.3E-07 2.8E-12 100.5 13.7 112 306-432 1-113 (304)
219 PRK06444 prephenate dehydrogen 98.7 2.7E-07 5.9E-12 90.6 13.6 114 306-484 1-120 (197)
220 COG0362 Gnd 6-phosphogluconate 98.6 5.7E-07 1.2E-11 93.8 15.0 208 306-546 4-241 (473)
221 cd00650 LDH_MDH_like NAD-depen 98.6 7.5E-08 1.6E-12 100.1 7.9 99 308-420 1-119 (263)
222 cd07015 Clp_protease_NfeD Nodu 98.6 5.4E-07 1.2E-11 86.3 12.2 146 16-187 2-170 (172)
223 TIGR00112 proC pyrroline-5-car 98.5 3.1E-06 6.8E-11 86.9 16.1 165 329-519 10-184 (245)
224 PF00056 Ldh_1_N: lactate/mala 98.5 8.6E-07 1.9E-11 82.8 9.8 103 306-422 1-120 (141)
225 PRK12480 D-lactate dehydrogena 98.5 5E-07 1.1E-11 96.6 9.1 100 306-433 147-249 (330)
226 KOG1683 Hydroxyacyl-CoA dehydr 98.4 9E-08 1.9E-12 99.3 2.7 164 13-183 65-240 (380)
227 COG4007 Predicted dehydrogenas 98.4 6.5E-06 1.4E-10 81.0 13.6 147 317-484 33-194 (340)
228 cd07013 S14_ClpP Caseinolytic 98.4 1.5E-06 3.3E-11 83.1 8.7 132 28-180 9-162 (162)
229 TIGR02354 thiF_fam2 thiamine b 98.4 9.3E-07 2E-11 87.5 7.5 104 306-417 22-142 (200)
230 PRK06129 3-hydroxyacyl-CoA deh 98.3 2E-06 4.3E-11 91.6 10.1 85 617-702 186-274 (308)
231 COG1893 ApbA Ketopantoate redu 98.3 5.3E-05 1.2E-09 80.2 20.4 166 306-485 1-176 (307)
232 cd05291 HicDH_like L-2-hydroxy 98.3 1.1E-06 2.4E-11 93.3 7.8 101 306-420 1-117 (306)
233 PRK10949 protease 4; Provision 98.3 4E-06 8.7E-11 96.2 12.6 159 12-192 325-538 (618)
234 PRK05708 2-dehydropantoate 2-r 98.3 4.3E-06 9.2E-11 88.9 11.2 175 306-495 3-186 (305)
235 KOG2666 UDP-glucose/GDP-mannos 98.3 1.2E-05 2.6E-10 81.3 13.0 196 305-519 1-251 (481)
236 cd05293 LDH_1 A subgroup of L- 98.3 3E-06 6.5E-11 89.8 9.4 101 306-420 4-120 (312)
237 PRK15076 alpha-galactosidase; 98.3 3.7E-06 8.1E-11 93.0 10.4 77 305-393 1-84 (431)
238 PRK13243 glyoxylate reductase; 98.2 5.8E-06 1.3E-10 88.7 11.0 102 306-433 151-255 (333)
239 cd05292 LDH_2 A subgroup of L- 98.2 2.3E-06 4.9E-11 90.9 7.0 97 306-416 1-113 (308)
240 PRK15469 ghrA bifunctional gly 98.2 1.7E-05 3.7E-10 84.1 12.9 113 306-444 137-253 (312)
241 PLN02602 lactate dehydrogenase 98.2 4.8E-06 1E-10 89.3 8.8 101 306-420 38-154 (350)
242 PRK13403 ketol-acid reductoiso 98.2 4.8E-06 1.1E-10 86.7 8.1 85 306-417 17-103 (335)
243 PRK06436 glycerate dehydrogena 98.2 1.4E-05 3E-10 84.4 11.4 135 306-469 123-268 (303)
244 PRK07574 formate dehydrogenase 98.1 2E-05 4.4E-10 85.5 12.7 130 306-459 193-334 (385)
245 PF02558 ApbA: Ketopantoate re 98.1 1.1E-05 2.4E-10 76.3 9.5 112 308-432 1-114 (151)
246 cd00300 LDH_like L-lactate deh 98.1 5.1E-06 1.1E-10 87.9 7.9 99 308-420 1-115 (300)
247 PRK00066 ldh L-lactate dehydro 98.1 5.1E-06 1.1E-10 88.3 7.7 100 306-420 7-122 (315)
248 PF07991 IlvN: Acetohydroxy ac 98.1 6.6E-06 1.4E-10 76.8 7.3 93 306-425 5-99 (165)
249 PLN03139 formate dehydrogenase 98.1 1.9E-05 4.2E-10 85.6 12.1 130 306-459 200-341 (386)
250 cd07017 S14_ClpP_2 Caseinolyti 98.1 9.7E-06 2.1E-10 78.4 7.5 132 28-180 18-171 (171)
251 KOG2711 Glycerol-3-phosphate d 98.0 1E-05 2.2E-10 83.3 7.7 117 303-425 19-144 (372)
252 PRK08605 D-lactate dehydrogena 98.0 6.8E-06 1.5E-10 88.2 6.7 99 306-432 147-250 (332)
253 cd05290 LDH_3 A subgroup of L- 98.0 1.3E-05 2.7E-10 84.9 8.2 103 307-422 1-121 (307)
254 PRK00277 clpP ATP-dependent Cl 98.0 3.4E-05 7.3E-10 76.4 10.7 134 26-183 38-196 (200)
255 COG0039 Mdh Malate/lactate deh 98.0 1.2E-05 2.5E-10 84.0 7.6 104 306-422 1-120 (313)
256 cd01065 NAD_bind_Shikimate_DH 98.0 8.3E-06 1.8E-10 77.5 5.8 117 306-442 20-139 (155)
257 PRK12553 ATP-dependent Clp pro 98.0 2.8E-05 6.1E-10 77.4 9.6 137 26-183 42-202 (207)
258 cd05294 LDH-like_MDH_nadp A la 98.0 1.3E-05 2.8E-10 85.2 7.3 123 306-441 1-145 (309)
259 KOG2380 Prephenate dehydrogena 98.0 0.00013 2.8E-09 74.9 13.3 151 306-483 53-218 (480)
260 KOG3124 Pyrroline-5-carboxylat 97.9 5E-05 1.1E-09 75.6 10.0 151 306-480 1-156 (267)
261 TIGR01327 PGDH D-3-phosphoglyc 97.9 5E-05 1.1E-09 86.6 11.3 130 306-460 139-279 (525)
262 PRK11778 putative inner membra 97.9 0.00012 2.6E-09 77.2 12.2 159 12-192 89-295 (330)
263 COG0111 SerA Phosphoglycerate 97.9 8E-05 1.7E-09 79.2 11.0 127 306-459 143-283 (324)
264 PF00574 CLP_protease: Clp pro 97.9 1.6E-05 3.6E-10 77.7 5.0 138 18-182 19-180 (182)
265 PRK05442 malate dehydrogenase; 97.8 3.1E-05 6.8E-10 82.5 6.8 106 305-424 4-134 (326)
266 PRK14512 ATP-dependent Clp pro 97.8 8.9E-05 1.9E-09 73.1 9.4 140 27-187 31-193 (197)
267 TIGR01759 MalateDH-SF1 malate 97.8 5.1E-05 1.1E-09 80.8 8.1 104 306-423 4-132 (323)
268 CHL00028 clpP ATP-dependent Cl 97.8 0.00015 3.3E-09 71.4 10.9 135 26-183 37-196 (200)
269 PF02826 2-Hacid_dh_C: D-isome 97.8 2E-05 4.3E-10 76.9 4.3 114 306-444 37-154 (178)
270 PRK13581 D-3-phosphoglycerate 97.8 0.00012 2.5E-09 83.6 11.1 129 306-460 141-280 (526)
271 PRK05225 ketol-acid reductoiso 97.8 0.0016 3.5E-08 70.8 18.7 185 306-517 37-251 (487)
272 PLN00112 malate dehydrogenase 97.8 0.0001 2.2E-09 81.0 9.7 104 306-423 101-229 (444)
273 PLN02928 oxidoreductase family 97.8 0.00013 2.9E-09 78.7 10.4 141 306-459 160-312 (347)
274 COG0616 SppA Periplasmic serin 97.7 0.00025 5.5E-09 75.4 11.5 160 14-193 60-272 (317)
275 cd01338 MDH_choloroplast_like 97.7 7E-05 1.5E-09 79.8 6.6 103 306-422 3-130 (322)
276 cd01337 MDH_glyoxysomal_mitoch 97.7 0.00013 2.7E-09 77.2 8.3 99 306-423 1-120 (310)
277 TIGR01772 MDH_euk_gproteo mala 97.7 0.00011 2.4E-09 77.8 7.8 98 307-423 1-119 (312)
278 TIGR00493 clpP ATP-dependent C 97.6 0.0004 8.7E-09 68.2 11.0 135 27-182 34-190 (191)
279 TIGR01757 Malate-DH_plant mala 97.6 0.00027 5.8E-09 76.6 10.5 104 306-423 45-173 (387)
280 PRK14194 bifunctional 5,10-met 97.6 0.00011 2.5E-09 76.4 6.8 71 306-420 160-231 (301)
281 PLN00106 malate dehydrogenase 97.6 0.00018 4E-09 76.4 8.3 117 306-441 19-163 (323)
282 PRK11790 D-3-phosphoglycerate 97.6 0.00038 8.3E-09 76.8 11.0 100 306-433 152-254 (409)
283 TIGR02853 spore_dpaA dipicolin 97.6 0.00013 2.8E-09 76.6 6.9 89 306-421 152-241 (287)
284 PRK08410 2-hydroxyacid dehydro 97.6 0.00042 9.1E-09 73.7 10.7 109 306-444 146-258 (311)
285 TIGR01771 L-LDH-NAD L-lactate 97.6 8E-05 1.7E-09 78.6 5.1 98 310-421 1-114 (299)
286 PRK13302 putative L-aspartate 97.6 0.00035 7.6E-09 72.8 9.8 80 303-406 4-87 (271)
287 TIGR00745 apbA_panE 2-dehydrop 97.5 0.0015 3.2E-08 68.9 14.4 165 315-494 1-176 (293)
288 PF02056 Glyco_hydro_4: Family 97.5 0.00081 1.8E-08 65.0 11.0 75 307-393 1-82 (183)
289 PRK14514 ATP-dependent Clp pro 97.5 0.00062 1.3E-08 67.9 10.3 135 26-183 61-219 (221)
290 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00028 6E-09 66.5 7.2 98 306-431 24-124 (162)
291 cd00704 MDH Malate dehydrogena 97.5 0.00013 2.9E-09 77.7 5.7 102 307-422 2-128 (323)
292 PRK15409 bifunctional glyoxyla 97.5 0.0008 1.7E-08 71.8 11.4 102 306-433 146-251 (323)
293 PRK06932 glycerate dehydrogena 97.5 0.00074 1.6E-08 71.9 11.1 109 306-444 148-260 (314)
294 PRK13304 L-aspartate dehydroge 97.5 0.00048 1E-08 71.6 9.4 85 306-416 2-90 (265)
295 PRK12319 acetyl-CoA carboxylas 97.5 0.003 6.4E-08 64.7 14.6 136 26-183 77-214 (256)
296 PRK06487 glycerate dehydrogena 97.5 0.00056 1.2E-08 73.0 9.8 97 306-433 149-248 (317)
297 KOG1495 Lactate dehydrogenase 97.4 0.00068 1.5E-08 67.8 9.2 107 305-425 20-142 (332)
298 PRK00257 erythronate-4-phospha 97.4 0.00013 2.8E-09 79.3 4.6 110 306-444 117-234 (381)
299 PRK14513 ATP-dependent Clp pro 97.4 0.00093 2E-08 65.7 10.2 136 26-184 34-193 (201)
300 cd05197 GH4_glycoside_hydrolas 97.4 0.00092 2E-08 73.9 11.3 103 306-421 1-144 (425)
301 PRK12551 ATP-dependent Clp pro 97.4 0.00093 2E-08 65.6 10.1 133 27-183 33-190 (196)
302 PLN03230 acetyl-coenzyme A car 97.4 0.0064 1.4E-07 65.3 16.5 136 26-183 200-337 (431)
303 PRK08306 dipicolinate synthase 97.4 0.00068 1.5E-08 71.6 9.1 90 306-422 153-243 (296)
304 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0013 2.8E-08 72.9 11.3 103 306-421 1-144 (437)
305 PTZ00325 malate dehydrogenase; 97.3 0.00063 1.4E-08 72.3 8.5 101 303-422 6-127 (321)
306 KOG2653 6-phosphogluconate deh 97.3 0.0062 1.3E-07 63.2 15.1 194 305-522 6-226 (487)
307 TIGR01758 MDH_euk_cyt malate d 97.3 0.00068 1.5E-08 72.4 8.6 102 307-423 1-128 (324)
308 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.0018 4E-08 64.2 11.0 39 306-344 29-67 (200)
309 PF01343 Peptidase_S49: Peptid 97.3 0.00057 1.2E-08 64.9 7.1 99 94-193 2-150 (154)
310 PRK07531 bifunctional 3-hydrox 97.3 0.00078 1.7E-08 76.5 9.2 70 615-685 182-252 (495)
311 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.00065 1.4E-08 65.8 7.3 95 307-409 1-112 (174)
312 CHL00174 accD acetyl-CoA carbo 97.3 0.012 2.5E-07 61.1 16.6 150 15-195 135-291 (296)
313 PRK04148 hypothetical protein; 97.3 0.003 6.4E-08 57.8 10.8 97 306-423 18-114 (134)
314 PRK06141 ornithine cyclodeamin 97.2 0.00079 1.7E-08 71.8 8.1 92 306-421 126-220 (314)
315 cd05296 GH4_P_beta_glucosidase 97.2 0.0016 3.6E-08 71.8 10.6 122 306-441 1-165 (419)
316 PRK05654 acetyl-CoA carboxylas 97.2 0.013 2.9E-07 61.1 16.7 156 16-200 123-283 (292)
317 PRK15438 erythronate-4-phospha 97.2 0.00026 5.7E-09 76.6 4.0 110 306-444 117-234 (378)
318 PF01972 SDH_sah: Serine dehyd 97.2 0.0036 7.8E-08 63.3 11.6 95 25-143 69-163 (285)
319 PRK14188 bifunctional 5,10-met 97.2 0.00073 1.6E-08 70.6 7.0 72 306-422 159-232 (296)
320 PLN02306 hydroxypyruvate reduc 97.2 0.0022 4.7E-08 70.1 10.9 117 306-433 166-287 (386)
321 PF01488 Shikimate_DH: Shikima 97.2 0.00049 1.1E-08 63.8 4.7 75 305-397 12-88 (135)
322 TIGR03133 malonate_beta malona 97.1 0.02 4.3E-07 59.1 16.3 149 15-184 61-218 (274)
323 CHL00198 accA acetyl-CoA carbo 97.1 0.016 3.4E-07 60.8 15.8 136 26-183 133-270 (322)
324 PLN03229 acetyl-coenzyme A car 97.1 0.011 2.3E-07 67.7 15.5 136 26-183 221-358 (762)
325 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0012 2.6E-08 70.3 7.5 93 306-421 179-274 (311)
326 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0021 4.5E-08 70.5 9.2 86 306-420 203-289 (413)
327 TIGR00515 accD acetyl-CoA carb 97.0 0.018 4E-07 59.8 15.5 149 18-198 124-280 (285)
328 PRK05724 acetyl-CoA carboxylas 97.0 0.037 8E-07 58.2 17.6 136 26-183 130-267 (319)
329 PRK14179 bifunctional 5,10-met 97.0 0.0016 3.4E-08 67.5 6.9 72 306-422 159-232 (284)
330 TIGR00513 accA acetyl-CoA carb 97.0 0.014 3E-07 61.2 13.8 136 26-183 130-267 (316)
331 TIGR02371 ala_DH_arch alanine 97.0 0.0023 5E-08 68.5 8.3 93 306-422 129-224 (325)
332 COG4091 Predicted homoserine d 97.0 0.011 2.4E-07 61.4 12.7 162 306-485 18-185 (438)
333 COG0569 TrkA K+ transport syst 97.0 0.0043 9.3E-08 62.8 9.8 92 306-418 1-99 (225)
334 COG1052 LdhA Lactate dehydroge 96.9 0.0018 4E-08 68.8 7.1 102 306-433 147-251 (324)
335 COG0740 ClpP Protease subunit 96.9 0.0042 9.1E-08 60.4 8.8 139 18-184 30-193 (200)
336 TIGR00936 ahcY adenosylhomocys 96.9 0.0025 5.4E-08 69.6 8.1 96 306-430 196-295 (406)
337 PRK08644 thiamine biosynthesis 96.9 0.0015 3.2E-08 65.5 5.9 96 306-409 29-141 (212)
338 COG1748 LYS9 Saccharopine dehy 96.9 0.0016 3.4E-08 70.4 6.3 95 305-420 1-99 (389)
339 PRK11861 bifunctional prephena 96.9 0.0045 9.9E-08 73.0 10.5 95 388-484 1-110 (673)
340 PRK05086 malate dehydrogenase; 96.9 0.0026 5.7E-08 67.6 7.7 99 306-422 1-120 (312)
341 PRK07189 malonate decarboxylas 96.9 0.041 8.9E-07 57.4 16.1 107 15-134 70-183 (301)
342 PRK05476 S-adenosyl-L-homocyst 96.8 0.0028 6E-08 69.7 7.8 86 306-421 213-300 (425)
343 cd01336 MDH_cytoplasmic_cytoso 96.8 0.0027 5.8E-08 68.0 7.4 102 306-422 3-130 (325)
344 COG0059 IlvC Ketol-acid reduct 96.8 0.0092 2E-07 61.2 10.5 145 305-479 18-176 (338)
345 TIGR00705 SppA_67K signal pept 96.8 0.016 3.5E-07 66.9 14.0 105 12-134 41-161 (584)
346 TIGR00507 aroE shikimate 5-deh 96.8 0.0022 4.9E-08 66.9 6.3 41 306-346 118-158 (270)
347 smart00859 Semialdhyde_dh Semi 96.8 0.0063 1.4E-07 55.2 8.5 101 307-426 1-105 (122)
348 COG1486 CelF Alpha-galactosida 96.7 0.011 2.4E-07 64.4 11.2 76 305-392 3-85 (442)
349 PF01113 DapB_N: Dihydrodipico 96.7 0.0041 8.8E-08 56.7 6.8 103 306-429 1-107 (124)
350 PRK12552 ATP-dependent Clp pro 96.7 0.016 3.5E-07 57.8 11.4 142 27-183 48-214 (222)
351 KOG0069 Glyoxylate/hydroxypyru 96.7 0.0045 9.8E-08 65.3 7.9 104 305-432 162-267 (336)
352 PRK12549 shikimate 5-dehydroge 96.7 0.0024 5.2E-08 67.0 5.8 72 306-393 128-201 (284)
353 PRK08618 ornithine cyclodeamin 96.7 0.0057 1.2E-07 65.6 8.8 93 306-422 128-223 (325)
354 PTZ00075 Adenosylhomocysteinas 96.7 0.0033 7.2E-08 69.5 7.0 88 306-424 255-344 (476)
355 PF01118 Semialdhyde_dh: Semia 96.7 0.0025 5.4E-08 57.8 5.0 99 307-426 1-103 (121)
356 PRK07340 ornithine cyclodeamin 96.6 0.0063 1.4E-07 64.6 8.6 91 306-422 126-219 (304)
357 PRK13301 putative L-aspartate 96.6 0.0073 1.6E-07 61.6 8.4 76 306-408 3-84 (267)
358 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0078 1.7E-07 57.8 8.2 76 306-425 45-121 (168)
359 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0032 7E-08 69.9 6.2 38 306-343 181-219 (417)
360 COG1712 Predicted dinucleotide 96.6 0.0091 2E-07 58.6 8.2 91 307-424 2-96 (255)
361 TIGR02992 ectoine_eutC ectoine 96.5 0.0074 1.6E-07 64.8 8.3 72 306-394 130-204 (326)
362 TIGR01921 DAP-DH diaminopimela 96.5 0.024 5.2E-07 60.0 11.7 124 306-496 4-133 (324)
363 PRK10949 protease 4; Provision 96.5 0.021 4.5E-07 66.1 12.0 84 33-134 97-180 (618)
364 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.0053 1.2E-07 60.6 6.0 41 306-346 29-70 (194)
365 PRK00258 aroE shikimate 5-dehy 96.4 0.0048 1E-07 64.7 5.9 71 306-395 124-196 (278)
366 COG1030 NfeD Membrane-bound se 96.4 0.034 7.3E-07 60.2 12.1 144 12-182 25-187 (436)
367 PLN02494 adenosylhomocysteinas 96.4 0.0067 1.5E-07 66.9 7.0 87 306-421 255-342 (477)
368 PF01408 GFO_IDH_MocA: Oxidore 96.4 0.027 5.8E-07 50.6 9.9 77 307-408 2-84 (120)
369 COG2910 Putative NADH-flavin r 96.4 0.0056 1.2E-07 58.2 5.3 38 306-343 1-39 (211)
370 PRK00045 hemA glutamyl-tRNA re 96.4 0.0068 1.5E-07 67.5 7.1 69 306-395 183-253 (423)
371 PLN02819 lysine-ketoglutarate 96.3 0.032 6.8E-07 67.9 12.6 123 255-396 514-660 (1042)
372 PRK08291 ectoine utilization p 96.3 0.013 2.8E-07 63.1 8.5 72 306-394 133-207 (330)
373 TIGR00518 alaDH alanine dehydr 96.3 0.0071 1.5E-07 66.0 6.2 40 305-344 167-206 (370)
374 TIGR03134 malonate_gamma malon 96.2 0.076 1.7E-06 53.8 13.0 139 27-185 44-191 (238)
375 PF01039 Carboxyl_trans: Carbo 96.2 0.099 2.2E-06 59.3 15.5 139 25-199 70-218 (493)
376 PRK00961 H(2)-dependent methyl 96.2 0.14 3E-06 51.8 14.2 113 373-488 129-247 (342)
377 PRK06407 ornithine cyclodeamin 96.1 0.018 3.9E-07 60.9 8.4 94 306-422 118-214 (301)
378 PRK00048 dihydrodipicolinate r 96.1 0.011 2.5E-07 61.1 6.6 93 306-427 2-98 (257)
379 PRK06046 alanine dehydrogenase 96.1 0.019 4.1E-07 61.6 8.4 93 306-422 130-225 (326)
380 TIGR01723 hmd_TIGR 5,10-methen 96.0 0.23 5E-06 50.4 15.0 108 373-483 127-239 (340)
381 PLN00203 glutamyl-tRNA reducta 96.0 0.0077 1.7E-07 68.2 5.3 83 306-406 267-352 (519)
382 PRK09310 aroDE bifunctional 3- 96.0 0.012 2.6E-07 66.4 6.8 70 306-396 333-402 (477)
383 PRK14175 bifunctional 5,10-met 96.0 0.016 3.5E-07 60.2 7.0 73 306-422 159-232 (286)
384 PRK06823 ornithine cyclodeamin 96.0 0.029 6.3E-07 59.7 9.1 94 305-422 128-224 (315)
385 PRK06718 precorrin-2 dehydroge 96.0 0.089 1.9E-06 52.3 11.9 126 306-475 11-142 (202)
386 TIGR01809 Shik-DH-AROM shikima 95.9 0.016 3.4E-07 60.8 6.9 41 306-346 126-167 (282)
387 TIGR01117 mmdA methylmalonyl-C 95.9 0.25 5.4E-06 56.1 16.8 164 18-199 319-497 (512)
388 COG2423 Predicted ornithine cy 95.9 0.026 5.7E-07 60.0 8.4 94 305-421 130-226 (330)
389 TIGR01470 cysG_Nterm siroheme 95.9 0.037 8.1E-07 55.1 8.9 128 306-476 10-143 (205)
390 PF03059 NAS: Nicotianamine sy 95.9 0.026 5.6E-07 58.4 7.8 98 306-418 122-228 (276)
391 PF13460 NAD_binding_10: NADH( 95.9 0.016 3.4E-07 56.4 6.1 78 308-408 1-87 (183)
392 TIGR02356 adenyl_thiF thiazole 95.8 0.023 4.9E-07 56.6 7.0 32 306-337 22-54 (202)
393 PRK13303 L-aspartate dehydroge 95.8 0.03 6.5E-07 58.2 8.2 77 306-406 2-81 (265)
394 TIGR01117 mmdA methylmalonyl-C 95.7 0.25 5.5E-06 56.1 15.6 138 25-196 95-242 (512)
395 PF02423 OCD_Mu_crystall: Orni 95.7 0.015 3.3E-07 61.9 5.5 95 306-422 129-226 (313)
396 PRK00683 murD UDP-N-acetylmura 95.7 0.049 1.1E-06 60.7 9.7 37 305-341 3-39 (418)
397 PRK07589 ornithine cyclodeamin 95.6 0.05 1.1E-06 58.5 9.1 95 306-422 130-227 (346)
398 COG1064 AdhP Zn-dependent alco 95.6 0.37 8E-06 51.3 15.3 40 306-345 168-207 (339)
399 PRK13940 glutamyl-tRNA reducta 95.6 0.016 3.6E-07 63.9 5.5 68 306-393 182-251 (414)
400 PRK12475 thiamine/molybdopteri 95.6 0.029 6.2E-07 60.4 7.1 33 306-338 25-58 (338)
401 PF02254 TrkA_N: TrkA-N domain 95.5 0.11 2.4E-06 46.3 9.9 89 308-418 1-95 (116)
402 cd05191 NAD_bind_amino_acid_DH 95.4 0.051 1.1E-06 45.9 6.9 31 306-336 24-55 (86)
403 COG0686 Ald Alanine dehydrogen 95.4 0.063 1.4E-06 55.4 8.4 92 306-418 169-266 (371)
404 PF13380 CoA_binding_2: CoA bi 95.4 0.045 9.7E-07 49.2 6.7 80 306-417 1-85 (116)
405 PRK02318 mannitol-1-phosphate 95.4 0.022 4.7E-07 62.6 5.5 40 306-345 1-41 (381)
406 COG0169 AroE Shikimate 5-dehyd 95.3 0.041 9E-07 57.3 7.1 42 306-347 127-169 (283)
407 COG0373 HemA Glutamyl-tRNA red 95.2 0.026 5.7E-07 61.4 5.5 40 306-345 179-219 (414)
408 PF03435 Saccharop_dh: Sacchar 95.2 0.024 5.3E-07 62.4 5.3 38 308-345 1-40 (386)
409 TIGR00036 dapB dihydrodipicoli 95.2 0.061 1.3E-06 55.9 7.9 32 306-337 2-36 (266)
410 PRK03659 glutathione-regulated 95.2 0.11 2.4E-06 60.6 10.7 94 306-421 401-500 (601)
411 PRK09496 trkA potassium transp 95.1 0.13 2.8E-06 57.9 10.8 39 306-344 1-39 (453)
412 PRK14189 bifunctional 5,10-met 95.0 0.041 9E-07 57.1 6.0 72 306-422 159-232 (285)
413 cd01484 E1-2_like Ubiquitin ac 95.0 0.075 1.6E-06 54.0 7.8 160 307-474 1-177 (234)
414 PRK07688 thiamine/molybdopteri 95.0 0.047 1E-06 58.7 6.7 33 306-338 25-58 (339)
415 PRK10669 putative cation:proto 95.0 0.13 2.7E-06 59.7 10.7 91 306-418 418-514 (558)
416 PRK06199 ornithine cyclodeamin 95.0 0.047 1E-06 59.7 6.7 74 305-393 155-232 (379)
417 PRK09424 pntA NAD(P) transhydr 95.0 0.089 1.9E-06 59.4 9.0 40 306-345 166-205 (509)
418 PRK00436 argC N-acetyl-gamma-g 94.9 0.085 1.8E-06 57.0 8.3 100 305-426 2-105 (343)
419 PRK09496 trkA potassium transp 94.8 0.19 4.1E-06 56.6 11.3 41 305-345 231-271 (453)
420 TIGR00561 pntA NAD(P) transhyd 94.8 0.086 1.9E-06 59.4 8.3 40 306-345 165-204 (511)
421 PLN02820 3-methylcrotonyl-CoA 94.8 0.77 1.7E-05 52.7 16.0 141 25-199 142-292 (569)
422 PRK14192 bifunctional 5,10-met 94.8 0.084 1.8E-06 55.2 7.6 71 306-420 160-231 (283)
423 cd05311 NAD_bind_2_malic_enz N 94.8 0.17 3.7E-06 51.2 9.6 32 306-337 26-60 (226)
424 PF00070 Pyr_redox: Pyridine n 94.8 0.042 9.1E-07 45.6 4.4 35 307-341 1-35 (80)
425 PRK04207 glyceraldehyde-3-phos 94.8 0.092 2E-06 56.6 8.0 106 306-422 2-111 (341)
426 PRK12409 D-amino acid dehydrog 94.7 0.025 5.5E-07 62.7 3.7 34 305-338 1-34 (410)
427 COG0136 Asd Aspartate-semialde 94.6 0.16 3.5E-06 53.6 9.2 147 306-483 2-156 (334)
428 cd01483 E1_enzyme_family Super 94.6 0.14 3E-06 47.7 8.0 31 307-337 1-32 (143)
429 PRK06153 hypothetical protein; 94.6 0.066 1.4E-06 57.7 6.3 32 306-337 177-209 (393)
430 PRK06719 precorrin-2 dehydroge 94.5 0.28 6E-06 46.6 9.8 32 306-337 14-45 (157)
431 KOG2305 3-hydroxyacyl-CoA dehy 94.5 0.024 5.2E-07 55.5 2.4 54 617-671 188-241 (313)
432 PRK14027 quinate/shikimate deh 94.4 0.051 1.1E-06 56.9 4.9 41 306-346 128-169 (283)
433 PRK03562 glutathione-regulated 94.2 0.26 5.5E-06 57.8 10.8 91 305-417 400-496 (621)
434 COG1063 Tdh Threonine dehydrog 94.2 0.2 4.3E-06 54.4 9.1 40 307-346 171-211 (350)
435 COG0777 AccD Acetyl-CoA carbox 94.2 1.1 2.4E-05 45.5 13.3 160 15-201 124-285 (294)
436 PLN03075 nicotianamine synthas 94.2 0.38 8.3E-06 50.3 10.7 101 305-420 124-233 (296)
437 KOG0068 D-3-phosphoglycerate d 94.1 0.49 1.1E-05 49.5 11.1 87 306-417 147-233 (406)
438 PRK01438 murD UDP-N-acetylmura 94.0 0.17 3.7E-06 57.5 8.6 47 292-339 4-50 (480)
439 PRK05562 precorrin-2 dehydroge 94.0 0.37 8E-06 48.4 9.7 127 306-475 26-158 (223)
440 TIGR01850 argC N-acetyl-gamma- 93.9 0.14 3.1E-06 55.3 7.2 148 306-475 1-165 (346)
441 COG0673 MviM Predicted dehydro 93.9 0.17 3.7E-06 54.5 7.9 73 304-398 2-81 (342)
442 PF13241 NAD_binding_7: Putati 93.9 0.17 3.7E-06 44.3 6.4 72 306-406 8-81 (103)
443 PRK12548 shikimate 5-dehydroge 93.8 0.085 1.8E-06 55.6 5.3 34 306-339 127-161 (289)
444 PF02882 THF_DHG_CYH_C: Tetrah 93.8 0.15 3.2E-06 48.4 6.3 74 306-423 37-111 (160)
445 cd00757 ThiF_MoeB_HesA_family 93.8 0.16 3.4E-06 51.6 6.9 33 306-338 22-55 (228)
446 PLN02968 Probable N-acetyl-gam 93.6 0.081 1.7E-06 57.8 4.8 102 304-426 37-140 (381)
447 PRK03369 murD UDP-N-acetylmura 93.6 0.43 9.2E-06 54.3 10.8 35 306-340 13-47 (488)
448 PRK08300 acetaldehyde dehydrog 93.6 0.41 8.8E-06 50.3 9.7 92 306-423 5-104 (302)
449 PRK00141 murD UDP-N-acetylmura 93.6 0.41 8.9E-06 54.2 10.6 37 304-340 14-50 (473)
450 PRK14191 bifunctional 5,10-met 93.6 0.19 4E-06 52.3 7.0 72 306-421 158-230 (285)
451 cd01489 Uba2_SUMO Ubiquitin ac 93.5 0.26 5.7E-06 52.1 8.3 32 307-338 1-33 (312)
452 PRK15116 sulfur acceptor prote 93.5 0.15 3.3E-06 52.7 6.3 33 306-338 31-64 (268)
453 KOG1494 NAD-dependent malate d 93.5 2.4 5.1E-05 43.4 14.4 176 303-496 26-258 (345)
454 TIGR03736 PRTRC_ThiF PRTRC sys 93.3 0.2 4.3E-06 51.1 6.7 98 306-408 12-129 (244)
455 PRK05600 thiamine biosynthesis 93.3 0.2 4.4E-06 54.5 7.3 32 306-337 42-74 (370)
456 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.26 5.6E-06 45.8 6.9 73 306-422 29-102 (140)
457 COG4799 Acetyl-CoA carboxylase 93.3 1.1 2.5E-05 50.1 13.0 140 25-200 104-251 (526)
458 PRK05597 molybdopterin biosynt 93.3 0.063 1.4E-06 58.3 3.3 33 306-338 29-62 (355)
459 cd00755 YgdL_like Family of ac 93.3 0.25 5.5E-06 50.0 7.4 33 306-338 12-45 (231)
460 cd01490 Ube1_repeat2 Ubiquitin 93.3 0.25 5.4E-06 54.6 7.9 162 307-476 1-186 (435)
461 PRK08762 molybdopterin biosynt 93.2 0.19 4E-06 55.2 6.9 32 306-337 136-168 (376)
462 PRK08223 hypothetical protein; 93.2 0.24 5.2E-06 51.6 7.3 33 306-338 28-61 (287)
463 PRK05690 molybdopterin biosynt 93.2 0.16 3.4E-06 52.1 5.9 32 306-337 33-65 (245)
464 COG1648 CysG Siroheme synthase 93.2 1.5 3.2E-05 43.8 12.6 130 306-475 13-145 (210)
465 cd01079 NAD_bind_m-THF_DH NAD 93.2 0.35 7.7E-06 47.1 7.8 88 306-423 63-159 (197)
466 PRK14178 bifunctional 5,10-met 93.0 0.31 6.7E-06 50.5 7.7 73 306-422 153-226 (279)
467 PRK12749 quinate/shikimate deh 93.0 0.17 3.7E-06 53.1 5.9 34 306-339 125-159 (288)
468 PRK00711 D-amino acid dehydrog 93.0 0.084 1.8E-06 58.6 3.8 33 307-339 2-34 (416)
469 cd05295 MDH_like Malate dehydr 93.0 0.3 6.6E-06 54.1 7.9 103 306-422 124-252 (452)
470 PRK12550 shikimate 5-dehydroge 92.9 0.23 5.1E-06 51.7 6.7 39 306-344 123-162 (272)
471 KOG0022 Alcohol dehydrogenase, 92.9 1.7 3.7E-05 45.2 12.6 87 306-405 194-282 (375)
472 PRK14874 aspartate-semialdehyd 92.9 0.2 4.2E-06 54.0 6.3 143 306-483 2-152 (334)
473 PRK10792 bifunctional 5,10-met 92.9 0.31 6.7E-06 50.7 7.4 71 306-420 160-231 (285)
474 PRK08328 hypothetical protein; 92.8 0.3 6.4E-06 49.7 7.2 34 306-339 28-62 (231)
475 COG2344 AT-rich DNA-binding pr 92.8 0.2 4.3E-06 48.0 5.4 80 304-408 83-168 (211)
476 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.26 5.7E-06 49.5 6.6 33 306-338 24-57 (217)
477 PRK14106 murD UDP-N-acetylmura 92.7 1.1 2.5E-05 50.3 12.4 34 305-338 5-38 (450)
478 PRK05868 hypothetical protein; 92.6 0.091 2E-06 57.6 3.3 36 305-340 1-36 (372)
479 TIGR02355 moeB molybdopterin s 92.5 0.27 5.8E-06 50.3 6.4 34 306-339 25-59 (240)
480 cd01486 Apg7 Apg7 is an E1-lik 92.5 0.048 1E-06 56.8 1.0 31 307-337 1-32 (307)
481 COG0190 FolD 5,10-methylene-te 92.5 0.37 8E-06 49.6 7.3 73 306-422 157-230 (283)
482 cd01076 NAD_bind_1_Glu_DH NAD( 92.5 0.22 4.7E-06 50.4 5.6 31 306-336 32-63 (227)
483 COG0499 SAM1 S-adenosylhomocys 92.4 0.43 9.3E-06 50.4 7.7 88 306-422 210-297 (420)
484 CHL00194 ycf39 Ycf39; Provisio 92.4 0.22 4.7E-06 53.2 5.9 36 306-341 1-37 (317)
485 PRK07236 hypothetical protein; 92.4 0.13 2.8E-06 56.6 4.2 37 303-339 4-40 (386)
486 KOG2018 Predicted dinucleotide 92.3 0.53 1.1E-05 48.5 8.0 109 282-405 62-185 (430)
487 PRK14176 bifunctional 5,10-met 92.3 0.36 7.9E-06 50.2 7.1 72 306-422 165-238 (287)
488 cd01492 Aos1_SUMO Ubiquitin ac 92.3 0.39 8.5E-06 47.5 7.1 32 306-337 22-54 (197)
489 PF13450 NAD_binding_8: NAD(P) 92.3 0.12 2.6E-06 41.6 2.7 30 310-339 1-30 (68)
490 PRK05671 aspartate-semialdehyd 92.0 1.3 2.9E-05 47.6 11.2 138 305-478 4-149 (336)
491 COG4074 Mth H2-forming N5,N10- 92.0 3.7 8E-05 40.3 12.9 160 373-541 127-292 (343)
492 TIGR03215 ac_ald_DH_ac acetald 92.0 0.52 1.1E-05 49.3 7.8 90 307-422 3-97 (285)
493 PRK07877 hypothetical protein; 91.9 0.19 4.1E-06 59.2 5.0 31 306-337 108-140 (722)
494 PLN00016 RNA-binding protein; 91.8 0.35 7.7E-06 53.0 6.8 37 304-340 51-92 (378)
495 TIGR01851 argC_other N-acetyl- 91.8 0.45 9.8E-06 50.1 7.1 125 306-475 2-130 (310)
496 COG0300 DltE Short-chain dehyd 91.7 0.41 9E-06 49.3 6.7 48 303-350 4-52 (265)
497 PF01494 FAD_binding_3: FAD bi 91.7 0.12 2.7E-06 55.4 3.1 33 307-339 3-35 (356)
498 PRK08664 aspartate-semialdehyd 91.7 0.23 5.1E-06 53.8 5.1 107 305-425 3-112 (349)
499 PRK12829 short chain dehydroge 91.7 0.94 2E-05 46.5 9.5 39 306-344 12-51 (264)
500 PF00899 ThiF: ThiF family; I 91.7 0.15 3.2E-06 47.1 3.1 32 306-337 3-35 (135)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=9.7e-131 Score=1139.36 Aligned_cols=696 Identities=34% Similarity=0.541 Sum_probs=618.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCCcCCCCchhhhhccCCC
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~v-Vltg~g~~F~aG~Dl~~~~~~~~~~ 77 (721)
|+++++.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6678899998 7999999999995 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccC
Q 004972 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVG 152 (721)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G 152 (721)
....+....++++ ..+.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|+ +++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222223344566 6799999999999999999999999999999999987 589999999999998 899999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCC-------------chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc--
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL-- 217 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~-- 217 (721)
..+|++|+++|++++|+||+++||||+|||+ +++.+.|.++++.++..+....+......+....
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999986 5588888888888765432211100000011000
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972 218 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 293 (721)
Q Consensus 218 ---~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 293 (721)
......+..++++ .++++++||||.+++++++.+...+++++++.|.+.|.+++.|++++++++.|+.+|..+|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1122344445554 457888899999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972 294 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 373 (721)
Q Consensus 294 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 373 (721)
. ...+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++.+.+..+++|
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee
Q 004972 374 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 453 (721)
Q Consensus 374 ~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lv 453 (721)
+++++++.+++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD 533 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D 533 (721)
||++++.|++++++.+..|++.+||.||+++|+||||+||++.+|++||++|+++|+++++||+++.++|||+|||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004972 534 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG 609 (721)
Q Consensus 534 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 609 (721)
.+|||+++++.+.+++.+++++. |++++++|+++|++|+|+|+|||+|++++ ++..++.+..++..... .|.
T Consensus 564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~ 639 (737)
T TIGR02441 564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK 639 (737)
T ss_pred HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence 99999999999999999887653 68999999999999999999999998654 45677777776644321 111
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC
Q 004972 610 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN 689 (721)
Q Consensus 610 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~ 689 (721)
....++++|.||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|+
T Consensus 640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~ 717 (737)
T TIGR02441 640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV 717 (737)
T ss_pred --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 013578999999999999999999999997799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHc-CCCCc
Q 004972 690 FFKPSRFLEERATK-GIPLS 708 (721)
Q Consensus 690 ~~~p~~~l~~~~~~-g~~f~ 708 (721)
+|+|+++|++|+++ |++||
T Consensus 718 ~~~p~~lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 718 QFTPCQLLLDHAKSPGKKFY 737 (737)
T ss_pred CcCCCHHHHHHHHhcCCCCC
Confidence 99999999999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3.6e-129 Score=1124.44 Aligned_cols=694 Identities=31% Similarity=0.518 Sum_probs=615.3
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC
Q 004972 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (721)
Q Consensus 1 m~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~ 77 (721)
|++. +++++..+++|++|||||| +.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5554 5778754689999999999 689999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG 152 (721)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G 152 (721)
....+....++++ +.|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112222344556 6799999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 228 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 228 (721)
..+|++|++||++++|++|+++||||+++|++++.+++.++++++....+.+.... ..+... .......+..++
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988665432221110 011111 111111233344
Q ss_pred H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcee
Q 004972 229 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 307 (721)
Q Consensus 229 ~-~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k 307 (721)
. ..+++.++||||..++++++.+...+++++++.|.+.|.+++.|+++++++++|+.+|..++.+.. ....+++++|
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence 4 455788999999999999999999999999999999999999999999999999999999876521 1234578999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972 308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 387 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 387 (721)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++.+.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHH
Q 004972 388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 467 (721)
Q Consensus 388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~ 467 (721)
|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++||||+++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972 468 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 546 (721)
Q Consensus 468 ~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 546 (721)
.+..|++.+||.||+++|.||||+||++.+|++||++|+++|++|++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHH
Q 004972 547 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 620 (721)
Q Consensus 547 l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 620 (721)
+...+++++. +++++++|+++|++|+|+|+|||+|+++. +...|+++..++...+. ....++.++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY--------EQRDFDDEEI 627 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc--------ccCCCCHHHH
Confidence 9998887642 56899999999999999999999996431 34566666655543321 1124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 004972 621 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 700 (721)
Q Consensus 621 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 700 (721)
.||++++++|||++||+|||+.+++|||.++++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|+|+++|++|
T Consensus 628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~ 706 (714)
T TIGR02437 628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM 706 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence 9999999999999999999777999999999999999999999999999999999999999665 789999999999999
Q ss_pred HHcCCCCc
Q 004972 701 ATKGIPLS 708 (721)
Q Consensus 701 ~~~g~~f~ 708 (721)
+++|++||
T Consensus 707 ~~~g~~f~ 714 (714)
T TIGR02437 707 AKNGQSFY 714 (714)
T ss_pred HHcCCCCC
Confidence 99999997
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.5e-127 Score=1112.49 Aligned_cols=695 Identities=32% Similarity=0.541 Sum_probs=614.2
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC
Q 004972 1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (721)
Q Consensus 1 m~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~ 77 (721)
|++. ++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6554 57777436889999999995 79999999999999999999999999999999999999999999885421111
Q ss_pred --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG 152 (721)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G 152 (721)
....+.....+++ ..+.++||||||+|||+|+|||++|+|+||+||++++++|++||+++|++|+ +++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 1112222334455 6689999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 228 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 228 (721)
..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+... +....++. .+....++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999764222111 11111110 11122233333
Q ss_pred HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcee
Q 004972 229 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 307 (721)
Q Consensus 229 ~~-~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k 307 (721)
+. .|+++++|||+..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+... ...+++++|
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence 32 367889999999999999999999999999999999999999999999999999999998765221 124467999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972 308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 387 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 387 (721)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHH
Q 004972 388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 467 (721)
Q Consensus 388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~ 467 (721)
|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++||||+++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972 468 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 546 (721)
Q Consensus 468 ~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 546 (721)
.+..|++.+||.||+++|.||||+||++.++++|+++++++|+++++||+++ .++|||+|||+++|.+|||+++++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHH
Q 004972 547 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 620 (721)
Q Consensus 547 l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 620 (721)
++..++++.. +++++++|+++|++|+|+|+|||+|+++. +...|+.+..++..... ....+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEI 627 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHH
Confidence 9998887643 56899999999999999999999997432 23455555555543221 1124678999
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 004972 621 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 700 (721)
Q Consensus 621 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 700 (721)
.||++.+++|||++|++|||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.+++.++.+. +++++|+|+++|++|
T Consensus 628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~ 706 (715)
T PRK11730 628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM 706 (715)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence 9999999999999999999866999999999999999999999999999999999999999875 588999999999999
Q ss_pred HHcCCCCcC
Q 004972 701 ATKGIPLSA 709 (721)
Q Consensus 701 ~~~g~~f~~ 709 (721)
+++|++||.
T Consensus 707 v~~~~~f~~ 715 (715)
T PRK11730 707 AANGESYYP 715 (715)
T ss_pred HHcCCCCCC
Confidence 999999973
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.1e-127 Score=1109.16 Aligned_cols=687 Identities=34% Similarity=0.571 Sum_probs=605.3
Q ss_pred EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
++++..+++|++|||||| . .|++|.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344554789999999999 3 699999999999999999999999999997 6788999999999998542111111122
Q ss_pred chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
....+.++ ..+.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|+ +++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 22334555 6699999999999999999999999999999999976 799999999999997 89999999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH-HHHHhCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTAP 236 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 236 (721)
+|+++|++++|+||+++||||+|+|++++++++.++|++. ..++... .........+.......+..+.+ ..+++++
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~-~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~ 238 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG-KPIRKPL-SLQERLLEGTPLGRALLFDQAAKKTAKKTQG 238 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC-CCCCCCc-cchhhhcccCchhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999741 0000000 00000000000111112222333 3457888
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLM 316 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~m 316 (721)
+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. . ..+.+++||+|||+|.|
T Consensus 239 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~m 315 (699)
T TIGR02440 239 NYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGLM 315 (699)
T ss_pred CChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcHH
Confidence 99999999999999999999999999999999999999999999999999999876552 2 23467899999999999
Q ss_pred cHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCC
Q 004972 317 GSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 395 (721)
Q Consensus 317 G~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~ 395 (721)
|++||..++ ++|++|+++|++++.++++..++.+.+++.++++.+++.+.+..+.+|+++++++.+++||+|||||||+
T Consensus 316 G~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E~ 395 (699)
T TIGR02440 316 GGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFED 395 (699)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecccc
Confidence 999999998 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004972 396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 475 (721)
Q Consensus 396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~ 475 (721)
+++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..|++.
T Consensus 396 l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~ 475 (699)
T TIGR02440 396 LALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK 475 (699)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 004972 476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRS 555 (721)
Q Consensus 476 lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~ 555 (721)
+||.||+++|.|||++||++.++++||++++++|+++++||++++++|||+|||+++|.+|+|+++++++.+++.+++++
T Consensus 476 ~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~~ 555 (699)
T TIGR02440 476 QGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERF 555 (699)
T ss_pred cCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999987
Q ss_pred CCcHHHHHHHHcCCCCcccCccccccCCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHHH
Q 004972 556 FQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCR 634 (721)
Q Consensus 556 ~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~ 634 (721)
.|++++++|+++|++|+|||+|||+|++++ ++..++.+..++. ..+ ...++++++.||++++++|||++
T Consensus 556 ~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea~~ 625 (699)
T TIGR02440 556 KAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEAVR 625 (699)
T ss_pred CCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999997643 3455555544431 111 12477899999999999999999
Q ss_pred HhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCc
Q 004972 635 VLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 708 (721)
Q Consensus 635 ~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~ 708 (721)
|++|||+.+|+|||.+|++|+|||+|++|||+++|.+|++.+++.++.+++.+|++|+|+++|++|+++|++||
T Consensus 626 ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 626 CLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 99999966999999999999999999999999999999999999999999999999999999999999999997
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1e-126 Score=1107.84 Aligned_cols=688 Identities=35% Similarity=0.573 Sum_probs=609.1
Q ss_pred CcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972 4 PRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
.+++++.++++|++|||||| +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++..........
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 35777775689999999999 57999999999999999999999999999999864 7999999999885422111111
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccCHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
.+....++++ ++|.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+ +++|+|++|..+
T Consensus 85 ~~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~ 163 (708)
T PRK11154 85 ALARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST 163 (708)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence 2223334455 6799999999999999999999999999999999986 589999999999997 899999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--CcHHHHHHHHHHHHH-HH
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AK 232 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 232 (721)
|++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ... ...++. +.......+..++.+ .+
T Consensus 164 A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~ 239 (708)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLP---VRERLLEGNPLGRALLFKQARKKTLA 239 (708)
T ss_pred HHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCC---chhhhcccCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988421110 000 000000 011112233334443 45
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEc
Q 004972 233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIG 312 (721)
Q Consensus 233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG 312 (721)
+++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. . ..+++++||+|||
T Consensus 240 ~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViG 316 (708)
T PRK11154 240 KTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLG 316 (708)
T ss_pred hcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEEC
Confidence 788899999999999999999999999999999999999999999999999999998876542 2 2346799999999
Q ss_pred CCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEc
Q 004972 313 GGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA 391 (721)
Q Consensus 313 ~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIea 391 (721)
+|.||++||..++ .+|++|+++|++++.++++..++++.+++++++|.+++.+.+..+++|+++++++++++||+||||
T Consensus 317 aG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEa 396 (708)
T PRK11154 317 GGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEA 396 (708)
T ss_pred CchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeec
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHH
Q 004972 392 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 471 (721)
Q Consensus 392 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~ 471 (721)
|||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..
T Consensus 397 v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~ 476 (708)
T PRK11154 397 VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA 476 (708)
T ss_pred ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004972 472 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 551 (721)
Q Consensus 472 l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 551 (721)
|++.+||.|++++|.||||+||++.+++||+++++++|+++++||.++.++|||+|||+++|.+|+|++.++++.+++.+
T Consensus 477 ~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~ 556 (708)
T PRK11154 477 LAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAAL 556 (708)
T ss_pred HHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCCCcccCccccccCCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHH
Q 004972 552 PDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPV 628 (721)
Q Consensus 552 ~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 628 (721)
++++.|++++++|+++|++|+|+|+|||+|+++++ +..++.+...+. ..+ ...+++++|.||+++++
T Consensus 557 ~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~ 626 (708)
T PRK11154 557 GERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLM 626 (708)
T ss_pred CCCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHH
Confidence 88777889999999999999999999999975322 344544443331 111 12588999999999999
Q ss_pred HHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCc
Q 004972 629 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 708 (721)
Q Consensus 629 ~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~ 708 (721)
+|||++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.++++|+|+++|++|+++|++||
T Consensus 627 ~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~ 706 (708)
T PRK11154 627 LNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFY 706 (708)
T ss_pred HHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCC
Confidence 99999999999966999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004972 709 A 709 (721)
Q Consensus 709 ~ 709 (721)
.
T Consensus 707 ~ 707 (708)
T PRK11154 707 P 707 (708)
T ss_pred C
Confidence 4
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.2e-74 Score=644.04 Aligned_cols=402 Identities=32% Similarity=0.513 Sum_probs=358.8
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+++||+|||+|.||++||..++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+|||||||+.++|+.+|++++.++++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++++.++++.+||.|++++|.|||++||++.++++||++++++| ++|++||+++ .++|||||||+++|++|||+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999997 5999999999 7899999999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccccccCCCCCCCCC-----------------------------
Q 004972 542 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD----------------------------- 590 (721)
Q Consensus 542 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~----------------------------- 590 (721)
++.+++++.+ +++.+ |++++++|+++|++|+|||+|||+|+++......
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999998874 55444 7899999999999999999999999764321111
Q ss_pred -----------------------------------------CCchhHHHHHhhhcc--CCCCC-----------------
Q 004972 591 -----------------------------------------PSVLPIIEECRRLSN--IMPGG----------------- 610 (721)
Q Consensus 591 -----------------------------------------~~~~~~~~~~~~~~~--~~~~~----------------- 610 (721)
+.+..++...+.... +.+..
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 000000000000000 01110
Q ss_pred --CCccc--ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHh
Q 004972 611 --KPISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 686 (721)
Q Consensus 611 --~~~~~--~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~ 686 (721)
.+..+ ++++|+||++++++|||++++++||+ +++|||.+|++|+|||. |||+++|.+|+|.++++++.+++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 00112 35899999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHcCCCCcC
Q 004972 687 YG-NFFKPSRFLEERATKGIPLSA 709 (721)
Q Consensus 687 ~~-~~~~p~~~l~~~~~~g~~f~~ 709 (721)
++ ++|+|+++|++|+++|.+|.+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~~~ 503 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGYED 503 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCcCC
Confidence 98 499999999999999999853
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.7e-73 Score=635.60 Aligned_cols=404 Identities=32% Similarity=0.550 Sum_probs=361.7
Q ss_pred CCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 302 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
.++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++++++++.
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 461 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t 461 (721)
+++||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004972 462 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 539 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~ 539 (721)
++++++++.++++.+||.|++++|.|||++||++.++++|+++++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999999997 5999999999 78999999999999999999
Q ss_pred HHHHHHHHHHhC-CC-CCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCc--------------------hhH
Q 004972 540 AAATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSV--------------------LPI 596 (721)
Q Consensus 540 ~~~~~~~l~~~~-~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~~~--------------------~~~ 596 (721)
.+++.+.+...+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ +.++++. ..+
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999988764 44 444789999999999999999999999975432 2222221 111
Q ss_pred HHH----------------------------Hhhhcc-----------CCC--CCCCccc--------------------
Q 004972 597 IEE----------------------------CRRLSN-----------IMP--GGKPISV-------------------- 615 (721)
Q Consensus 597 ~~~----------------------------~~~~~~-----------~~~--~~~~~~~-------------------- 615 (721)
+.. ...... +.| ..+..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 100 000000 000 0011112
Q ss_pred ----------ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHH
Q 004972 616 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 685 (721)
Q Consensus 616 ----------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~ 685 (721)
++++|.||++++++|||++|++|||+ +++|||.+|++|+|||+ |||+++|.+|++.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 68999999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred hhCC-CCCCCHHHHHHHHcCCCCcC
Q 004972 686 LYGN-FFKPSRFLEERATKGIPLSA 709 (721)
Q Consensus 686 ~~~~-~~~p~~~l~~~~~~g~~f~~ 709 (721)
.+|+ +|+|+++|++|+++|+.||.
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~~~ 504 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSLRS 504 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence 9995 99999999999999999976
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=2.1e-65 Score=525.61 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=270.9
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
.++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|++++.+.+..+++|+.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+|||+|+||+++|+++|++++.++++++||+||||+++++++++.+.+|+||+|+|||||++.|++|||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++++.+|.+.+||.|++++|.||||+||++.++++||++++++|+ +|++||+++ .++|||||||+++|++|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccCC
Q 004972 542 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 583 (721)
Q Consensus 542 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~ 583 (721)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 34 789999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-63 Score=466.23 Aligned_cols=280 Identities=33% Similarity=0.589 Sum_probs=265.5
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-----HHHhhcCceecc
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL 377 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 377 (721)
..++.|+|||+|.||++||+..+..|++|+++|.+++.+.++.+.|.+.+.+..+++..+... .+..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 357889999999999999999999999999999999999999999999999998888776444 366778999999
Q ss_pred Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe
Q 004972 378 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 456 (721)
Q Consensus 378 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv 456 (721)
+. +.++++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||+.+|++||||
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 98 66899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004972 457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 534 (721)
Q Consensus 457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~ 534 (721)
.++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+|||||+++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 999999999 999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccC
Q 004972 535 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE 582 (721)
Q Consensus 535 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~ 582 (721)
+|||++..+++.+++.+++. .| |+|++.++|++|++|+|+|.|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998653 33 99999999999999999999999993
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-59 Score=489.48 Aligned_cols=280 Identities=34% Similarity=0.549 Sum_probs=270.5
Q ss_pred CCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 302 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
.++++||+|||+|.||.+||..++.+|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++++++++.
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhC-CCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 460 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~ 460 (721)
+++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+|++.++++||+++..
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~ 161 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV 161 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004972 461 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY 537 (721)
Q Consensus 461 t~~e~~~~~~~l~~-~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gl 537 (721)
|++++++++.+|+. .+||.|++++|.|||++||++.+++||+++|+++|+ +|+|||+++ .++|||+|||+++|.+|+
T Consensus 162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl 241 (286)
T PRK07819 162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL 241 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence 99999999999988 599999999999999999999999999999999997 999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004972 538 GVAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY 581 (721)
Q Consensus 538 d~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 581 (721)
|++.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 999999999999998755 48899999999999999999999998
No 11
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-61 Score=488.35 Aligned_cols=378 Identities=38% Similarity=0.630 Sum_probs=348.1
Q ss_pred CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCC
Q 004972 316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 395 (721)
Q Consensus 316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~ 395 (721)
||++||..+..+|++|+++|.+...++++...+...+...+.+++++..+.......+..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004972 396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 475 (721)
Q Consensus 396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~ 475 (721)
+++|++++.+|++++++++|+.+|||+++++++++.+..|++++|+|||+|.+.++++||+.+.+|+.+++..+......
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004972 476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 554 (721)
Q Consensus 476 lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 554 (721)
.|+.|++|++++||.+||++.+|.+++.++..+ |++|.++|+....||||+||+++.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999988 9999999999999999999999999999998887776665554443
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHH
Q 004972 555 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 633 (721)
Q Consensus 555 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 633 (721)
+.++|++.|+.|+|||+|||.|+++.++..++ +..+.+...+ ........+++++++|++++.+|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78999999999999999999998875544444 3333333322 11223457899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCcC
Q 004972 634 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 709 (721)
Q Consensus 634 ~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~ 709 (721)
+|++|||..+++++|.+.++|+|||+++||||.|+|..|++++++.|+.|+. |+||.+|++++++|+-||.
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999975 9999999999999999984
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.5e-55 Score=461.49 Aligned_cols=279 Identities=29% Similarity=0.444 Sum_probs=264.8
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-HHHhhcCceeccCcc-c
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYS-E 381 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 381 (721)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.++...+.+.++..+ .+....+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999998888888888888888776 666778999999984 6
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 461 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t 461 (721)
+++||+||+|+||+.+.|+++++++.+.+++++||++|+|+++++++++.+.+|+||+|+|||+|++.++++||++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004972 462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 538 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld 538 (721)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccC
Q 004972 539 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 582 (721)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~ 582 (721)
++.++++++++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 88999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-54 Score=453.65 Aligned_cols=281 Identities=32% Similarity=0.512 Sum_probs=267.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++||+|||+|.||.+||..++++|++|++||++++.++.+.+++...+...++.+.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888888999988888888899988888 6789
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+||+|+|++.++|+.+++++.+.+++++++++|+|+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004972 542 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS 585 (721)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 585 (721)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999988877799999999999999999999999997643
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-54 Score=454.38 Aligned_cols=278 Identities=31% Similarity=0.549 Sum_probs=263.4
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH---HHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 380 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 380 (721)
+++||+|||+|.||++||..++++|++|++||++++.++.+.+++++ .+...++.+.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988777765 366677888888888888888898888887
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 460 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~ 460 (721)
.+++||+||+|+|++.++|+++++++.+.+++++||+||||+++++++++.+.+++|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004972 461 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 538 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld 538 (721)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Ccccccc
Q 004972 539 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY 581 (721)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~-----g~GfY~y 581 (721)
++.++++.+++.++++++ |++++++|+++|++|+|+ |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999988665 889999999999999999 9999998
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.2e-54 Score=451.46 Aligned_cols=278 Identities=36% Similarity=0.617 Sum_probs=267.0
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
.|+||+|||+|.||.+||..++++|++|+++|++++.++++..++++.++...+.|.++..+......+++.+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 46799999999999999999999999999999999999999999999999999999999888888888999898987799
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+||+|+||+.++|+++++++.++++++++|+|+||+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++.+.++++.+|+.|++++|.|||++||++.+++||+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|.+.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCcccccc
Q 004972 542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 581 (721)
Q Consensus 542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y 581 (721)
++++.+++.++++.+ |++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999887554 8899999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-53 Score=451.07 Aligned_cols=282 Identities=32% Similarity=0.577 Sum_probs=269.8
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++.++.+++.|.++.++.+..++++.++++.+.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+|||||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccccccCCCC
Q 004972 542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS 585 (721)
Q Consensus 542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 585 (721)
++++.+++.+++++| |++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 999999999887554 88999999999999999999999997654
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.7e-53 Score=447.70 Aligned_cols=281 Identities=32% Similarity=0.524 Sum_probs=267.4
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+...++.|.++..+.+..+.+++++++++.++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999888888888888889998888777888899999888899
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+||+||||+.++|+.+++++.+.++++++|+||||+++++++++.+.+++|++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 541 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 541 (721)
++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||+++ .++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccccccCCC
Q 004972 542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG 584 (721)
Q Consensus 542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 584 (721)
++++.+++.++++.+ |++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 999999999887554 8899999999999999999999999654
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.5e-52 Score=435.80 Aligned_cols=268 Identities=28% Similarity=0.411 Sum_probs=255.2
Q ss_pred CcHHHHHHHHHCCCceEEEeCCHH-------HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC--c-cccCCC
Q 004972 316 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 385 (721)
Q Consensus 316 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 385 (721)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.+++++.+..+++|+++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788999999999999999999999999999998865 3 568999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHH
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 465 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~ 465 (721)
|+|||||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004972 466 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 540 (721)
Q Consensus 466 ~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~Gld~~ 540 (721)
++++.++++.+|+.|++++|.|||++||++.++++|++.++++| +++++||.++ .++|+| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999997 5999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004972 541 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK 583 (721)
Q Consensus 541 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 583 (721)
+++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 555899999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.1e-52 Score=433.49 Aligned_cols=277 Identities=24% Similarity=0.325 Sum_probs=248.5
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
++++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++.+.+.+ ++.. ...++++.++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 457899999999999999999999999999999999999999888888888888877 3332 334688888888 56
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 461 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t 461 (721)
+++||+|||||||++++|+++|+++.+++++++||+||||+++++++++.+.+|+||+|+||||||+.+|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004972 462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 535 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p---~Gpf~~~D~~ 535 (721)
++++++.+..|++.+||.||++ +|.||||+||++.++++||++++++|+ |++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999997 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccccccCC
Q 004972 536 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 583 (721)
Q Consensus 536 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~G~~G~k~g~GfY~y~~ 583 (721)
|+|. +.+.++.+.+.+.+. ..+|++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 455556665554321 124556666766 68999999999999964
No 20
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=382.09 Aligned_cols=241 Identities=32% Similarity=0.514 Sum_probs=218.1
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (721)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (721)
+++|+.||||||+ +|+++..++.+|.+++..+++|+++.++||||.|+.||+|+||+++......+-.. ..+.+.+
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~~~~~~~ 120 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---GIFLRVW 120 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---ccccchh
Confidence 7889999999996 69999999999999999999999999999999999999999999997643222111 1122333
Q ss_pred HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcC
Q 004972 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSIT 167 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~ 167 (721)
..+.+.+||+||+|||+|+|||+||++.||+|||+++|+|++|+.++|++|+ |+||+|.+|..+|+++++||++++
T Consensus 121 -~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~ 199 (290)
T KOG1680|consen 121 -DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG 199 (290)
T ss_pred -hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence 4455899999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004972 168 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 247 (721)
Q Consensus 168 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 247 (721)
|+||+++|||++|||.++++.+|.+|+++|++.|+..+ .+.|+.
T Consensus 200 AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v------------------------------------~~~K~s 243 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVV------------------------------------RADKES 243 (290)
T ss_pred HHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHH------------------------------------HHHHHH
Confidence 99999999999999999999999999999999987432 356788
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 248 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 248 i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
++.+.++++.+++..|...|...+.++|.+|+|.+|.+||++++.
T Consensus 244 vn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 244 VNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 999999999999999999999999999999999999999998864
No 21
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=396.13 Aligned_cols=253 Identities=31% Similarity=0.457 Sum_probs=224.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-Ccc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (721)
|+++.+.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8889999998 78999999999988999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEM 159 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l 159 (721)
........+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+++++.++++++|..+|++|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~l 158 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRM 158 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHH
Confidence 11122234455 66889999999999999999999999999999999999999999999998668889999999999999
Q ss_pred HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972 160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239 (721)
Q Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+++|++++|+||+++||||++||++++++++.++++++++.+|..+
T Consensus 159 ll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~---------------------------------- 204 (257)
T PRK06495 159 MLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLAT---------------------------------- 204 (257)
T ss_pred HHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999887532
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 205 --~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 205 --RLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 34567777777788999999999999999999999999999999998875
No 22
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-47 Score=396.98 Aligned_cols=253 Identities=23% Similarity=0.337 Sum_probs=223.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|..+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence 3467888998 7999999999995 6999999999999999999999999999999999999999999987542211111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAI 157 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~ 157 (721)
..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +.+|+|++|..+|+
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHH
Confidence 11222233455 6689999999999999999999999999999999999999999999999997 67899999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (721)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a--------------------------------- 212 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAA--------------------------------- 212 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence 99999999999999999999999999999999999999999988643
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++.++++.|.+.+..++.++|+++++++|++||++++
T Consensus 213 ---~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 213 ---VRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 235677888888888999999999999999999999999999999988775
No 23
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-47 Score=395.38 Aligned_cols=250 Identities=30% Similarity=0.454 Sum_probs=224.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+.......+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112223444 5689999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~--------------------------------- 202 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLP--------------------------------- 202 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHH---------------------------------
Confidence 99999999999999999999999999999999999999999988764
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
++..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||++.+
T Consensus 203 ---a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 203 ---AVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 3345677888887888999999999999999999999999999999998764
No 24
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-47 Score=396.41 Aligned_cols=249 Identities=40% Similarity=0.649 Sum_probs=222.0
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (721)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (721)
++.+++ +++|++||||||+.|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++...........+..
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 688888 7899999999998899999999999999999999999999999999999999999998854321111111222
Q ss_pred HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML 161 (721)
Q Consensus 85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l 161 (721)
..+.++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|..+|++|++
T Consensus 82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 334555 6789999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972 162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 241 (721)
+|++++|+||+++||||+|||++++++++.++++++++.+|. ++
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~------------------------------------a~ 204 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPA------------------------------------TT 204 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHH------------------------------------HH
Confidence 999999999999999999999999999999999999998764 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 35677888777788999999999999999999999999999999988775
No 25
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-47 Score=395.10 Aligned_cols=251 Identities=32% Similarity=0.522 Sum_probs=221.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC-
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~- 77 (721)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 7899999999995 7999999999999999999999999999999998 6999999999875421111
Q ss_pred --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG 152 (721)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G 152 (721)
....+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 5688999999999999999999999999999999999999999999999997 889999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 232 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (721)
..+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a---------------------------- 209 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVA---------------------------- 209 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999987643
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972 233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 290 (721)
Q Consensus 233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 290 (721)
...+|++++.....+++++++.|.+.+..++.++|+++++.+|++||+++
T Consensus 210 --------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 210 --------VAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 33557778887778899999999999999999999999999999999875
No 26
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-47 Score=392.52 Aligned_cols=250 Identities=25% Similarity=0.390 Sum_probs=220.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+..++.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 778889999757889999999995 6999999999999999999999999999999998 69999999998754221 11
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKA 156 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a 156 (721)
...+....+.++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+.|+ +++|++++|..+|
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a 160 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWART 160 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHH
Confidence 112223334555 6688999999999999999999999999999999999999999999998333 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------- 208 (256)
T PRK06143 161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQA-------------------------------- 208 (256)
T ss_pred HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHH--------------------------------
Confidence 999999999999999999999999999999999999999999988643
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 288 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 288 (721)
...+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus 209 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 209 ----LRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 234567777777788999999999999999999999999999999975
No 27
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=391.81 Aligned_cols=247 Identities=26% Similarity=0.336 Sum_probs=216.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (721)
++.+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 45544478899999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC
Q 004972 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS 165 (721)
Q Consensus 86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~ 165 (721)
...++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++.+|++++|..++++|+++|++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~ 161 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAAT 161 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCc
Confidence 33455 66899999999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred cCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004972 166 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACL 245 (721)
Q Consensus 166 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 245 (721)
++|+||+++||||+|||++++++++.++++++++.+|..+ ..+|
T Consensus 162 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------------~~~K 205 (249)
T PRK07938 162 ITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVI------------------------------------RAAK 205 (249)
T ss_pred CCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999999876432 3456
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004972 246 DVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 289 (721)
Q Consensus 246 ~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~ 289 (721)
+.++.....+++++++.|.+.+..++.++|+++++++|++||+|
T Consensus 206 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 206 EALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 77777777788999999999999999999999999999999874
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-47 Score=392.34 Aligned_cols=253 Identities=26% Similarity=0.368 Sum_probs=222.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8889999998 7899999999995 6999999999999999999999999999999999999999999987542111101
Q ss_pred ccc--chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHH
Q 004972 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSK 155 (721)
Q Consensus 80 ~~~--~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~ 155 (721)
... ......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ..++++++|..+
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~ 158 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERA 158 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHH
Confidence 111 12234455 6689999999999999999999999999999999999999999999999998 567999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------- 207 (262)
T PRK05995 159 ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQA------------------------------- 207 (262)
T ss_pred HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999987643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++.+. ++.|...+..++.|+|+++++++|++||++++
T Consensus 208 -----~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 208 -----VRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred -----HHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 2345677777777788888 88999999999999999999999999998774
No 29
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-47 Score=396.49 Aligned_cols=253 Identities=27% Similarity=0.403 Sum_probs=222.0
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC--
Q 004972 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (721)
Q Consensus 1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-- 76 (721)
|+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 8999999999994 7999999999999999999999999999999999999999999988542110
Q ss_pred -----Ccccc---cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cc
Q 004972 77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQ 145 (721)
Q Consensus 77 -----~~~~~---~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~ 145 (721)
..... .....++++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00011 112234455 5688999999999999999999999999999999999999999999999997 78
Q ss_pred ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHH
Q 004972 146 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 224 (721)
Q Consensus 146 ~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (721)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.++++++++.+|..
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a-------------------- 219 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLA-------------------- 219 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHH--------------------
Confidence 99999999999999999999999999999999999985 889999999999999987643
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 225 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 225 ~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus 220 ----------------~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 220 ----------------VRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ----------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 234567777777788999999999999999999999999999999998764
No 30
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-47 Score=392.32 Aligned_cols=248 Identities=31% Similarity=0.470 Sum_probs=220.4
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccc
Q 004972 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (721)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (721)
.+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++++|||||.| ++||+|+|++++..... .....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence 488888 78999999999988999999999999999999999999999999998 68999999998754211 1111122
Q ss_pred hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHH
Q 004972 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMM 160 (721)
Q Consensus 84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ 160 (721)
..+..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|+
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2334455 6689999999999999999999999999999999999999999999999997 88999999999999999
Q ss_pred HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004972 161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 240 (721)
Q Consensus 161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 240 (721)
++|++++|+||+++||||+|||++++++++.++++++++.+|..+
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~----------------------------------- 205 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAV----------------------------------- 205 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999887532
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 241 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 241 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....++.+.++.|.+.+..++.++|+++++++|++||++++
T Consensus 206 -~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 206 -AACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 34567777777778999999999999999999999999999999988775
No 31
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-47 Score=390.14 Aligned_cols=249 Identities=29% Similarity=0.443 Sum_probs=219.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
+.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++ +++|+|||||.|++||+|+|++++..... ......
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence 4688888 7899999999995 79999999999999999997 78999999999999999999999854221 111112
Q ss_pred chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM 159 (721)
Q Consensus 83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l 159 (721)
.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 22334555 6689999999999999999999999999999999999999999999999997 8899999999999999
Q ss_pred HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972 160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239 (721)
Q Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+++|++++|+||+++||||+|||++++.+++.++++++++.+|..
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------- 201 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLT----------------------------------- 201 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence 999999999999999999999999999999999999999988643
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 293 (721)
Q Consensus 240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 293 (721)
...+|+.++.....++++++..|.+.+..++.|+|+++++.+|++||+++.++
T Consensus 202 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 202 -NFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 23456778777778899999999999999999999999999999999887643
No 32
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=4.9e-47 Score=392.59 Aligned_cols=252 Identities=32% Similarity=0.518 Sum_probs=225.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8899999999 7899999999996 6999999999999999999999999999999999 89999999999854221 11
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
...+......++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222334455 6789999999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------- 206 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIA------------------------------- 206 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999987642
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.+...++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 207 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 207 -----VKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 335677888888888999999999999999999999999999999998764
No 33
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-47 Score=392.01 Aligned_cols=252 Identities=25% Similarity=0.365 Sum_probs=222.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC--
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 77 (721)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++ |+++++|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888899999 7899999999995 79999999999999999999 99999999999999999999999875321111
Q ss_pred cc-cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972 78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL 153 (721)
Q Consensus 78 ~~-~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~ 153 (721)
.. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 00 01111223344 6688999999999999999999999999999999999999999999999997 7899999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972 154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 233 (721)
Q Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (721)
.+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a----------------------------- 208 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRG----------------------------- 208 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999987642
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus 209 -------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 209 -------LALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred -------HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 235577788777788999999999999999999999999999999998764
No 34
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.1e-47 Score=390.97 Aligned_cols=255 Identities=20% Similarity=0.273 Sum_probs=219.7
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+ ++++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 55 8899999844789999999995 699999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHH
Q 004972 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLS 154 (721)
Q Consensus 79 ~~~--~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~ 154 (721)
... .......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ..++++++|..
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHH
Confidence 011 111233455 6688999999999999999999999999999999999999999999999997 55699999999
Q ss_pred HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 234 (721)
Q Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (721)
+|++|++||++++|+||+++||||+|||++++.+++.++++++++.+|..+
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~----------------------------- 210 (265)
T PRK05674 160 AARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQAL----------------------------- 210 (265)
T ss_pred HHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999887432
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 235 APNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
..+|+.++.....++.+++.. |.+.+..++.|+|+++++++|++||++.+.
T Consensus 211 -------~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 211 -------RASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred -------HHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 345677777777788888765 556788899999999999999999987753
No 35
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.4e-46 Score=387.54 Aligned_cols=248 Identities=30% Similarity=0.442 Sum_probs=221.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|| .+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 478888 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|..++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11112233455 6689999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a-------------------------------- 201 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLA-------------------------------- 201 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence 999999999999999999999999999999999999999999988643
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|.+.+..++.++++++++++|++||++++
T Consensus 202 ----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 202 ----LRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 335577788877888999999999999999999999999999999988764
No 36
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=388.41 Aligned_cols=248 Identities=25% Similarity=0.348 Sum_probs=216.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (721)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 6899999999995 79999999999999999999999999999999999999999999985421111 111111
Q ss_pred HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML 161 (721)
Q Consensus 85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l 161 (721)
...+.+...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323478999999999999999999999999999999999999999999999996 789999999999999999
Q ss_pred cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972 162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 241 (721)
||++++|+||+++||||+|+|++++.+++.++++++++.+|.++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------------ 202 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGV------------------------------------ 202 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHH------------------------------------
Confidence 99999999999999999999999999999999999998876432
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....++.++++.|...+..++.++|+++++++|++||++..
T Consensus 203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 34567777777788999999999999999999999999999999998764
No 37
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-46 Score=386.87 Aligned_cols=248 Identities=32% Similarity=0.459 Sum_probs=220.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 567888756889999999996 699999999999999999999999999999999999999999998764211 1112
Q ss_pred chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM 159 (721)
Q Consensus 83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l 159 (721)
....++++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|+|++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334455 6688999999999999999999999999999999999999999999999997 7899999999999999
Q ss_pred HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972 160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239 (721)
Q Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+++|++++|+||+++||||+|||++++.+++.++++++++.++.
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~------------------------------------ 206 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPL------------------------------------ 206 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHH------------------------------------
Confidence 99999999999999999999999999999999999999987753
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
++..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 207 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 207 ALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 2335677888877888999999999999999999999999999999998764
No 38
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-46 Score=389.66 Aligned_cols=253 Identities=24% Similarity=0.326 Sum_probs=223.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCcCCCCchhhhhccCCC-
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~-~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~- 77 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++++|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8899999999 7899999999995 69999999999999999999876 499999999999999999999975422111
Q ss_pred ---c-ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccc
Q 004972 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRL 150 (721)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~ 150 (721)
. ...+....+.++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011112234455 6789999999999999999999999999999999999999999999999997 7899999
Q ss_pred cCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004972 151 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 230 (721)
Q Consensus 151 ~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (721)
+|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.++..
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a-------------------------- 212 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVA-------------------------- 212 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999877532
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 231 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 231 ~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus 213 ----------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 213 ----------LGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ----------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 234567777777788999999999999999999999999999999998775
No 39
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=388.00 Aligned_cols=252 Identities=29% Similarity=0.473 Sum_probs=222.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+ ++|.+++.+++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|+ +||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 77 578888646899999999996 79999999999999999999999999999999994 9999999998754211 11
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
...+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334555 6689999999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a------------------------------- 206 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIA------------------------------- 206 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999987643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|.+.+..++.|+|+++++++|+++|++++
T Consensus 207 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 207 -----VRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 335577788777788999999999999999999999999999999998774
No 40
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-46 Score=388.88 Aligned_cols=252 Identities=26% Similarity=0.344 Sum_probs=220.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~- 77 (721)
|| +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 4588888 7899999999995 699995 99999999999999999999999999999999999999985421110
Q ss_pred -cc----cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccc
Q 004972 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPR 149 (721)
Q Consensus 78 -~~----~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r 149 (721)
.. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111123444 5688999999999999999999999999999999999999999999999997 889999
Q ss_pred ccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004972 150 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 229 (721)
Q Consensus 150 ~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (721)
++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------ 213 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHAL------------------------ 213 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999887532
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....++++.+..|.+.+..++.|+|+++++++|++||++.+
T Consensus 214 ------------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 214 ------------RLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred ------------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 34567777777788899999999999999999999999999999998764
No 41
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=4.3e-46 Score=385.25 Aligned_cols=250 Identities=28% Similarity=0.458 Sum_probs=220.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (721)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.+.....
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 4567787546889999999995 79999999999999999999999999999999999999999999875321111
Q ss_pred cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE 158 (721)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~ 158 (721)
......+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111223455 5688999999999999999999999999999999999999999999999997 789999999999999
Q ss_pred HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972 159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 238 (721)
Q Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (721)
|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------------- 208 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGM---------------------------------- 208 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence 9999999999999999999999999999999999999999988643
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhcCCC
Q 004972 239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP 293 (721)
Q Consensus 239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~~r~~~~~~ 293 (721)
...+|++++.....++++++..|.+.+..++ .++|+++++++|++||+++|.|
T Consensus 209 --~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 209 --VLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 3355778887778889999999999888886 5999999999999999998865
No 42
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-46 Score=386.39 Aligned_cols=253 Identities=23% Similarity=0.330 Sum_probs=218.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+++.+.+++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 677888998843689999999995 7999999999999999999999999999999999999999999987532111100
Q ss_pred c--ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS 154 (721)
Q Consensus 80 ~--~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~ 154 (721)
. ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++ +.+++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhccHH
Confidence 0 1112233445 6789999999999999999999999999999999999999999999999997 54 55669999
Q ss_pred HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 234 (721)
Q Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (721)
++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.+|..+
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~----------------------------- 209 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAV----------------------------- 209 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876432
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.......+++++.|...+..++.|+|+++++++|++||++++
T Consensus 210 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 210 -------AAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred -------HHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 34566776665556788899999999999999999999999999998775
No 43
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.1e-46 Score=385.00 Aligned_cols=242 Identities=29% Similarity=0.456 Sum_probs=215.1
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (721)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (721)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999995 699999999999999999999999999999998 589999999998754211 1111222333445
Q ss_pred HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCc
Q 004972 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSI 166 (721)
Q Consensus 90 ~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~ 166 (721)
+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..++++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 5688999999999999999999999999999999999999999999999997 78999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004972 167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 246 (721)
Q Consensus 167 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 246 (721)
+|+||+++||||+|||++++++++.++++++++.+|.. ...+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a------------------------------------~~~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLA------------------------------------IKMAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHH------------------------------------HHHHHH
Confidence 99999999999999999999999999999999988643 235577
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 247 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 247 ~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
+++.....++.++++.|.+.+..++.++|+++++++|++||++.+
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 888777788999999999999999999999999999999998764
No 44
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=3.3e-46 Score=386.11 Aligned_cols=250 Identities=23% Similarity=0.334 Sum_probs=218.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
||. .+.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.......
T Consensus 1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 663 588888 78999999999988999999999999999999999999999999998 6999999999875422111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+.......+ +.+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 5688999999999999999999999999999999999999999999999997 7799999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.+|..+
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 204 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAI------------------------------- 204 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999886432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|+.++.....+++++++.|.. .+..++.|+|+++++++|++||++++
T Consensus 205 -----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 205 -----AALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 345677777777888899888874 78889999999999999999998764
No 45
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2.5e-46 Score=386.14 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=216.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-Ccc-ccc
Q 004972 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM 82 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~-~~~ 82 (721)
+.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+ +++|||||.|++||+|+|++++...... ... ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35677 7899999999995 79999999999999999999988 9999999999999999999998542111 100 111
Q ss_pred chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM 159 (721)
Q Consensus 83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l 159 (721)
......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11123344 6688999999999999999999999999999999999999999999999996 7899999999999999
Q ss_pred HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972 160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239 (721)
Q Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+++|++++|+||+++||||+|+|++++++++.++++++++.+|..
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~----------------------------------- 202 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRG----------------------------------- 202 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence 999999999999999999999999999999999999999988642
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 203 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 203 -LALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred -HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 235577888777788999999999999999999999999999999998775
No 46
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-46 Score=386.12 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=218.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (721)
++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 46788888 7899999999995 699999999999999999999999999999999999999999999864321111110
Q ss_pred --c-chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 82 --~-~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
+ .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|..+
T Consensus 83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 0111 123 2367899999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a------------------------------- 209 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLA------------------------------- 209 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHH-------------------------------
Confidence 9999999999999999999999999999999999999999999987643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.++++.|.+.+..++.++++++++++|++||++++
T Consensus 210 -----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 210 -----VQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 235577888777888999999999999999999999999999999988764
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-46 Score=388.45 Aligned_cols=253 Identities=27% Similarity=0.369 Sum_probs=222.4
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|.++.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 7889999999 67 99999999995 799999999999999999999999999999999999999999998754221110
Q ss_pred c-----cccch----HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccc
Q 004972 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQR 146 (721)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~ 146 (721)
. ..+.. ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123344 5688999999999999999999999999999999999999999999999997 789
Q ss_pred cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004972 147 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 225 (721)
Q Consensus 147 l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (721)
|+|++|..++++|+++|++++|+||+++||||+|+|++++++++.++++++++. +|.+
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a--------------------- 218 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPAS--------------------- 218 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHH---------------------
Confidence 999999999999999999999999999999999999999999999999999985 5532
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 226 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 226 ~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++.++++.|...+..++.++++++++++|++||++.+
T Consensus 219 ---------------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 219 ---------------MAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred ---------------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 335577888877788999999999999999999999999999999998765
No 48
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-46 Score=385.30 Aligned_cols=249 Identities=30% Similarity=0.414 Sum_probs=218.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8889999998 7899999999996 6999999999999999999999999999999998 6999999999875422111
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
.....+..+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+
T Consensus 79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0011122222 3 45899999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------- 203 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLS------------------------------- 203 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999988643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....+++++++.| ...+..++.++|+++++.+|++||++++
T Consensus 204 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 204 -----IRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 23456778877778899999999 5678899999999999999999987764
No 49
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-46 Score=385.33 Aligned_cols=252 Identities=23% Similarity=0.297 Sum_probs=222.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC--C
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--~ 77 (721)
|| ..+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.|+.||+|+|++++...... .
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 3578888 7899999999995 7999999999999999999999999999999999999999999988542111 1
Q ss_pred cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS 154 (721)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~ 154 (721)
....+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223334555 6688999999999999999999999999999999999999999999999997 78999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 234 (721)
Q Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (721)
++++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~------------------------------ 207 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNA------------------------------ 207 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887542
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.+...++.+++..|.+.+..++.|+|+++++++|+++|++++
T Consensus 208 ------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 208 ------LARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred ------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 234567788777888999999999999999999999999999999998764
No 50
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-46 Score=388.32 Aligned_cols=249 Identities=30% Similarity=0.423 Sum_probs=220.1
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-C--ccc
Q 004972 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS 80 (721)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~--~~~ 80 (721)
++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...... . ...
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 7899999999994 7999999999999999999999999999999999999999999987432111 1 111
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc-c---ccccccccCHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-G---TQRLPRLVGLSKA 156 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-~---~~~l~r~~G~~~a 156 (721)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| + +++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222233455 678999999999999999999999999999999999999999999999995 3 8899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..+
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 224 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAH------------------------------- 224 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999886432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 225 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 225 -----GMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred -----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 34577788777888999999999999999999999999999999998875
No 51
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-46 Score=386.43 Aligned_cols=251 Identities=24% Similarity=0.387 Sum_probs=221.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC-cc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV 79 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~ 79 (721)
.+.|.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... ..
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 46788998 7899999999995 7999999999999999999999999999999998 7999999999875421111 11
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 12222233445 6689999999999999999999999999999999999999999999999987 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++++++.++|++++..+|..
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a-------------------------------- 215 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLT-------------------------------- 215 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence 999999999999999999999999999999999999999999987642
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++++.++.|...+..++.|+|+++++.+|++||++.+
T Consensus 216 ----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 216 ----LRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 234567777777788999999999999999999999999999999998765
No 52
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=5.4e-46 Score=386.63 Aligned_cols=248 Identities=22% Similarity=0.316 Sum_probs=215.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-c--
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D-- 78 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-- 78 (721)
|+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 35688998 7899999999995 79999999999999999999999999999999999999999999875321111 0
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
..........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+
T Consensus 86 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 86 QERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 111111223445 6688999999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|..
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a------------------------------- 213 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVV------------------------------- 213 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999988643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHHhhh
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 288 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~~r~ 288 (721)
...+|++++.....++.+.++.|.+ .+..++.++ |+++++++|++||.
T Consensus 214 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 214 -----LRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 2355778888778888898888764 456678998 89999999999988
No 53
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-46 Score=382.36 Aligned_cols=247 Identities=28% Similarity=0.398 Sum_probs=216.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++.......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 76 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS-- 76 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence 55 4688888 7899999999996 69999999999999999999999999999999999999999999986421111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
........++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|
T Consensus 77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 1111111222 24799999999999999999999999999999999999999999999997 8899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a-------------------------------- 200 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLA-------------------------------- 200 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence 999999999999999999999999999999999999999999987643
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++.+.++.|...+..++.++|+++++.+|++||++++
T Consensus 201 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 201 ----VAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 234567777777778899999999999999999999999999999987764
No 54
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=5.7e-46 Score=386.37 Aligned_cols=254 Identities=19% Similarity=0.253 Sum_probs=220.8
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC--CCCcCCCCchhhhhccCCCc-c
Q 004972 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-V 79 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g--~~F~aG~Dl~~~~~~~~~~~-~ 79 (721)
.+.+.+++.+++|++||||||+.|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++........ .
T Consensus 10 ~~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~ 89 (278)
T PLN03214 10 TPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARY 89 (278)
T ss_pred CCceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHH
Confidence 35688887448899999999988999999999999999999999999999999987 69999999998753211110 1
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCc-ccc---ccccccccCHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPG---TQRLPRLVGLSK 155 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl-~P~---~~~l~r~~G~~~ 155 (721)
..+......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+ ++++++++|..+
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~ 168 (278)
T PLN03214 90 AEFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKV 168 (278)
T ss_pred HHHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHH
Confidence 11111123344 5689999999999999999999999999999999999999999999999 586 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||.+++++++.+++++++..++..+
T Consensus 169 a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------ 218 (278)
T PLN03214 169 AESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAAR------------------------------ 218 (278)
T ss_pred HHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876432
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 293 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 293 (721)
..+|++++.....+++++++.|.+.+..++.|+|+++++++|++|.+.||.+
T Consensus 219 ------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 219 ------AATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred ------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 3456777777777889999999999999999999999999999999988865
No 55
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-46 Score=383.73 Aligned_cols=251 Identities=31% Similarity=0.428 Sum_probs=223.1
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~-~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|+ .+.+.+++ +++|++|+|||| +.|++|.+|+++|.++++++++|+++++|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06688 1 MTMVTDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP- 78 (259)
T ss_pred CCCCCceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch-
Confidence 44 35688888 789999999999 579999999999999999999999999999999999999999999986532211
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
..+....++++ +.+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+ ++++++++|..+
T Consensus 79 -~~~~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~ 156 (259)
T PRK06688 79 -PDELAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRAR 156 (259)
T ss_pred -HHHHHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHH
Confidence 12233445566 6689999999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+++|++++++++.++++++++.++..
T Consensus 157 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a------------------------------- 205 (259)
T PRK06688 157 AAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASA------------------------------- 205 (259)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999887542
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++++++..|.+.+..++.++++++++++|++||++++
T Consensus 206 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 206 -----LRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred -----HHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 234567777777788999999999999999999999999999999987764
No 56
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=5.9e-46 Score=386.91 Aligned_cols=243 Identities=25% Similarity=0.407 Sum_probs=213.5
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---c-------cc
Q 004972 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---D-------VS 80 (721)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---~-------~~ 80 (721)
+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... . ..
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (275)
T PLN02664 15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR 94 (275)
T ss_pred CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence 6889999999995 69999999999999999999999999999999999999999999885421100 0 00
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
.+....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|+
T Consensus 95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~ 173 (275)
T PLN02664 95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM 173 (275)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence 1111223445 5688999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
+|++||++++|+||+++||||+|||+ +++.+++.+++++|++.+|..+
T Consensus 174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~------------------------------- 222 (275)
T PLN02664 174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAV------------------------------- 222 (275)
T ss_pred HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 99999999999999999999999985 8899999999999999887432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....++.++++.|...+..++.|+|+++++++|++||++.+
T Consensus 223 -----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 223 -----TGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 34567777777788999999999999999999999999999999998775
No 57
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.3e-45 Score=387.79 Aligned_cols=276 Identities=31% Similarity=0.527 Sum_probs=246.6
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+........+. ....+++++.++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443332222111 01233567777777 458
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 462 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~ 462 (721)
++||+||+|||++.+.++.+++++.+.++++++|+|+||+++++++++.+..+.+|+++||++|++.++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004972 463 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 536 (721)
Q Consensus 463 ~e~~~~~~~l~~~lG~~~v~v~-d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~G 536 (721)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| +++++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999996 5999999999 899998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCC
Q 004972 537 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 584 (721)
Q Consensus 537 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 584 (721)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999887779999999999999999999999999754
No 58
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=8.9e-46 Score=382.21 Aligned_cols=250 Identities=25% Similarity=0.365 Sum_probs=210.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (721)
+.+.+++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635789999999995 6999999999999999999999999999999999 79999999998743211110000
Q ss_pred cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE 158 (721)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~ 158 (721)
.......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|+.+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 001122344 6688999999999999999999999999999999999999999999999986 889999999999999
Q ss_pred HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972 159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 238 (721)
Q Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (721)
|+++|++++|+||+++||||+|||++++++++.++++++++.+|..++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875332
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
.+|++++..... ....++.|.+.+..++.|+|+++++++|++||++++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 345555554332 345566778889999999999999999999998775
No 59
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.5e-45 Score=379.82 Aligned_cols=249 Identities=27% Similarity=0.323 Sum_probs=209.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
|+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 45788898 7899999999995 7999999999999999999999999999999998 69999999998743111 1 11
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
.+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112233455 6689999999999999999999999999999999999999999999999854 88999999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (721)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..+
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~-------------------------------- 204 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAI-------------------------------- 204 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999887533
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
..+|++++......... ...|...+..++.|+|+++++.+|++||++++.
T Consensus 205 ----~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 205 ----AIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred ----HHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 23455565543322111 123556788899999999999999999987753
No 60
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-45 Score=379.12 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=219.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (721)
++++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 35688888 7899999999996 699999999999999999999999999999999999999999999864221111111
Q ss_pred ---cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 82 ---~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122334455 5689999999999999999999999999999999999999999999999997 789999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
+++|+++|++++|+||+++||||+++|++++.+++.++++++++.+|..
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------- 207 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNS------------------------------- 207 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999987643
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 288 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 288 (721)
...+|+.++.....++++.+..|...+..++.|+|+++++++|++||+
T Consensus 208 -----~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 208 -----YAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -----HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 235577788877888999999999999999999999999999999885
No 61
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-45 Score=381.54 Aligned_cols=248 Identities=22% Similarity=0.273 Sum_probs=218.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
+++.+++ +++|++||||||+ .|++|.+|+.+|.++++++ .|+++++|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 4588888 7899999999995 6999999999999999999 58899999999999999999999998642211111222
Q ss_pred chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM 159 (721)
Q Consensus 83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l 159 (721)
.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 23334555 5688999999999999999999999999999999999999999999999996 7899999999999999
Q ss_pred HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972 160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239 (721)
Q Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+++|++++|+||+++||||+|| ++++.+++.++++++++.++..
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a----------------------------------- 206 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKA----------------------------------- 206 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence 9999999999999999999999 7889999999999999987642
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 207 -~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 207 -MIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred -HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 235567787777788999999999999999999999999999999998764
No 62
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.4e-45 Score=380.87 Aligned_cols=250 Identities=21% Similarity=0.289 Sum_probs=217.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCCcCCCCchhhhhccCCC
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--g~~F~aG~Dl~~~~~~~~~~ 77 (721)
||++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+ +++|||||. |++||+|+|++++..... .
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~ 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c
Confidence 9999999999 7999999999995 79999999999999999999887 999999986 379999999998753211 1
Q ss_pred cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS 154 (721)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~ 154 (721)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++++|..
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223334555 6689999999999999999999999999999999999999999999999886 88999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 234 (721)
Q Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (721)
+|++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|..+
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~----------------------------- 206 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAI----------------------------- 206 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886532
Q ss_pred CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 235 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 235 ~~~~~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.... .+. ...++.|.+.+..++.|+|+++++.+|++||++++
T Consensus 207 -------~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 207 -------AVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred -------HHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 244566664432 233 57888899999999999999999999999998775
No 63
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-45 Score=384.63 Aligned_cols=252 Identities=22% Similarity=0.208 Sum_probs=214.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchh-hhh---cc-
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---VH- 74 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~-~~~---~~- 74 (721)
|+++.+.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|+++ +.. ..
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788899998 7999999999995 699999999999999999999999999999999999999999986 321 00
Q ss_pred CCC---ccccc---c-hH--HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccccc-Ccccc-
Q 004972 75 GAG---DVSLM---P-DV--SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPG- 143 (721)
Q Consensus 75 ~~~---~~~~~---~-~~--~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~-Gl~P~- 143 (721)
... ....+ . .. ....+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++ |++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~ 159 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTG 159 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchh
Confidence 000 00111 0 00 11234 45889999999999999999999999999999999999999999997 98876
Q ss_pred ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHH
Q 004972 144 TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 223 (721)
Q Consensus 144 ~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (721)
++ .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|+..+|..+
T Consensus 160 ~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~------------------ 219 (298)
T PRK12478 160 MW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQL------------------ 219 (298)
T ss_pred HH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH------------------
Confidence 43 3569999999999999999999999999999999999999999999999999876432
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHhhhhcCC
Q 004972 224 LKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 292 (721)
Q Consensus 224 ~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~~r~~~~~ 292 (721)
..+|++++.... .+++++++.|.+.+..++.|+|++ +++.+|++||++...
T Consensus 220 ------------------~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 220 ------------------QAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ------------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 345677777666 468999999999999999999997 599999999998754
No 64
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-45 Score=385.01 Aligned_cols=255 Identities=25% Similarity=0.340 Sum_probs=215.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC-C--
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~-- 76 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7788899999 7899999999995 699999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cc----ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc
Q 004972 77 ---------GD----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (721)
Q Consensus 77 ---------~~----~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~ 143 (721)
.. ...+......++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 00 001111123345 6688999999999999999999999999999999999999999999999997
Q ss_pred ---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHH
Q 004972 144 ---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 219 (721)
Q Consensus 144 ---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~ 219 (721)
+++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.++++++++. ++..
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a--------------- 223 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVS--------------- 223 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHH---------------
Confidence 789999999999999999999999999999999999999999999999999999985 5432
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972 220 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 293 (721)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~-~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 293 (721)
+..+|++++.....+ ..+....|...+..++.|+|+++++.+|++||++.+.+
T Consensus 224 ---------------------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 224 ---------------------VALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred ---------------------HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 234566666653221 22344668888999999999999999999999987654
No 65
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=4.4e-45 Score=379.65 Aligned_cols=250 Identities=26% Similarity=0.368 Sum_probs=212.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 45788888 7899999999995 6999999999999999999999999999999998 5999999999874321111 00
Q ss_pred ccch-HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 81 ~~~~-~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +.+|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 0111 122344 5688999999999999999999999999999999999999999999999986 7889999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|..+
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 217 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL------------------------------- 217 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999887533
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
..+|++++.... ..+...+.|.+.+..++.|+|+++++.+|++||++.+.
T Consensus 218 -----~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 218 -----RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred -----HHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 234555555433 34445567888899999999999999999999987754
No 66
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-45 Score=375.62 Aligned_cols=245 Identities=27% Similarity=0.326 Sum_probs=212.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+ +.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+++++|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999996 699999999999999999999999999999999999999999998754211 111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
.. ......+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..+|
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0011112 1234799999999999999999999999999999999999999999999986 8899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|..+
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 203 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCL------------------------------- 203 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999886432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 288 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 288 (721)
..+|++++.....+++++++.|...+..++. +|+++++.+|++|+.
T Consensus 204 -----~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 204 -----RADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 3456778777778899999999998888887 999999999998876
No 67
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-45 Score=379.15 Aligned_cols=247 Identities=26% Similarity=0.411 Sum_probs=211.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
.+.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45788998 7899999999995 6999999999999999999999999999999998 6999999999875432111111
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc-cCcccc---ccccccccCHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~-~Gl~P~---~~~l~r~~G~~~a 156 (721)
.+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|+ +++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222334455 5688999999999999999999999999999999999999999997 999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++++++|++++|+||+++||||+|+|++++++++.++++++++.+|..++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998864332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
.+|+.++..... .++.+.+.+..++.++|+++++.+|++||++.+
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 345555554333 345566788899999999999999999998764
No 68
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-45 Score=375.26 Aligned_cols=244 Identities=25% Similarity=0.403 Sum_probs=212.8
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC
Q 004972 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (721)
Q Consensus 1 m~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~ 76 (721)
|+ +.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 44 59999999995 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL 153 (721)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~ 153 (721)
. ..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ ++++++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334555 6689999999999999999999999999999999999999999999999997 7899999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972 154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 233 (721)
Q Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (721)
.+|++++++|++++|+||+++||||+|||++++.+++.++++++++.+|..+
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~---------------------------- 207 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQAL---------------------------- 207 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886432
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972 234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 286 (721)
Q Consensus 234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 286 (721)
..+|++++... .++.+.++.|.+.+..++.++|+++++++|++|
T Consensus 208 --------~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 208 --------QIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred --------HHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 24456666543 467888999999999999999999999999974
No 69
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.8e-45 Score=374.37 Aligned_cols=242 Identities=26% Similarity=0.366 Sum_probs=208.5
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (721)
|.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++... ....+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78899999999988999999999999999999999999999999999999999999986321 11111222
Q ss_pred HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcC
Q 004972 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLS 163 (721)
Q Consensus 86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg 163 (721)
..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|++||
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg 156 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSG 156 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcC
Confidence 33455 6688999999999999999999999999999999999999999999999986 78999999999999999999
Q ss_pred CCcCHHHHHHcCCccEEcCCchHHHHHHHH-HHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972 164 KSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242 (721)
Q Consensus 164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 242 (721)
++++|+||+++||||+|+|+.+ +++.++ ++++++.+|.++ .
T Consensus 157 ~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~------------------------------------~ 198 (251)
T TIGR03189 157 RSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSL------------------------------------R 198 (251)
T ss_pred CCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHH------------------------------------H
Confidence 9999999999999999997543 466666 688998886432 3
Q ss_pred HHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 243 ACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 243 ~~~~~i~~~~~~~~~~~l~-~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
.+|++++.....++++++. .|.+.+..++.|+|+++++++|++||++.+
T Consensus 199 ~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 199 FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 4567777777777777764 788889999999999999999999998875
No 70
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-45 Score=379.64 Aligned_cols=251 Identities=25% Similarity=0.343 Sum_probs=211.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---cc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (721)
+.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777635789999999995 69999999999999999999999999999999999999999999874321100 00
Q ss_pred c---ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc-c---ccccccccC
Q 004972 80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-G---TQRLPRLVG 152 (721)
Q Consensus 80 ~---~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-~---~~~l~r~~G 152 (721)
. ......++++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| + +++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 0 1112233445 568899999999999999999999999999999999999999999999997 4 789999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 232 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (721)
..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|++.+|..+
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~--------------------------- 220 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGI--------------------------- 220 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999886432
Q ss_pred HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhhhcC
Q 004972 233 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 233 ~~~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++..... ++++++..|...+. .++.|+|+++++.+|++||++.+
T Consensus 221 ---------~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 221 ---------ELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred ---------HHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3456677665554 67888887875432 35789999999999999998764
No 71
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-45 Score=375.18 Aligned_cols=244 Identities=27% Similarity=0.306 Sum_probs=214.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 3478888 7899999999995 79999999999999999999999999999999999999999999986532211 1
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
........+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +++|++++|..+|
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 5588999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|++||++++|+||+++||||+|+ +++++++.++++++++.+|..
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a-------------------------------- 202 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPREL-------------------------------- 202 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence 9999999999999999999999999 689999999999999988643
Q ss_pred CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972 237 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 286 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 286 (721)
...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 203 ----~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 203 ----VLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ----HHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 3355777887776 789999999999999999999999999999874
No 72
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-45 Score=377.84 Aligned_cols=248 Identities=25% Similarity=0.303 Sum_probs=207.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-cc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (721)
++.+.++.++++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5678888744789999999996 699999999999999999999999999999999999999999998754221111 11
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122223445 5688999999999999999999999999999999999999999999999997 88999999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (721)
+|++||++++|+||+++||||+|+|++++++++.++|+++++.+|..++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998865332
Q ss_pred ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 238 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 238 ~~A~~~~~~~i~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
.+|++++... ..+++..+..|. .++.|+|+++++.+|++||++.+
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 3344554331 123444444443 47889999999999999998775
No 73
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-44 Score=371.23 Aligned_cols=247 Identities=28% Similarity=0.403 Sum_probs=219.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-- 77 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-- 77 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence 8999999999 8999999999995 79999999999999999999999999999999999999999999986421111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
.. ....++++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++|..+|
T Consensus 78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 12234555 6799999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|++||++++|+||+++||||+++|++++++++.++++++++.+|..+
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 204 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAV------------------------------- 204 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999886433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhh
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA 288 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~~r~ 288 (721)
..+|++++.....+++++++.|...+..++.| +..++...+|.++-+
T Consensus 205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 205 -----RALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 35577888888888999999999999999999 677777778877654
No 74
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3e-44 Score=369.91 Aligned_cols=248 Identities=18% Similarity=0.219 Sum_probs=211.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++ +++++|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7888999999 7899999999995 69999999999999999998 469999999999999999999998642221111
Q ss_pred c-ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHH
Q 004972 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~-~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a 156 (721)
. .......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +.+|++++|..++
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a 156 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKA 156 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHH
Confidence 1 1112233455 6688999999999999999999999999999999999999999999999997 6789999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|+++|++++|+||+++||||+|||+++. .+.++++++++.+|.++
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~------------------------------- 203 (255)
T PRK07112 157 HYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAV------------------------------- 203 (255)
T ss_pred HHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHH-------------------------------
Confidence 999999999999999999999999987653 57889999998876432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus 204 -----~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 204 -----ARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred -----HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 2345566543 345788999999999999999999999999999988764
No 75
>PLN02921 naphthoate synthase
Probab=100.00 E-value=3.8e-44 Score=378.41 Aligned_cols=251 Identities=26% Similarity=0.312 Sum_probs=210.7
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcc
Q 004972 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
++.+.++++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456788874 4889999999995 6999999999999999999999999999999999 7999999999875321110 0
Q ss_pred cccch-HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +++|+|++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112334 5688999999999999999999999999999999999999999999999985 788999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|..+
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al------------------------------ 271 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAI------------------------------ 271 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887533
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
..+|++++..... .......|...+..++.|+|+++++.+|++||++...
T Consensus 272 ------~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 272 ------RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred ------HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 2445666655432 3333444568888999999999999999999988753
No 76
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-44 Score=372.33 Aligned_cols=247 Identities=27% Similarity=0.419 Sum_probs=215.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++....... ....
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 80 (262)
T PRK07509 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL 80 (262)
T ss_pred ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence 5788999 7999999999994 79999999999999999999999999999999999999999999886432111 1111
Q ss_pred c-------hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972 83 P-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG 152 (721)
Q Consensus 83 ~-------~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G 152 (721)
. ....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 1 1122333 5578999999999999999999999999999999999999999999999997 789999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 232 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (721)
..++++|+++|++++|+||+++||||+|++ ++.+++.++++++++.+|..
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~---------------------------- 209 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDA---------------------------- 209 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHH----------------------------
Confidence 999999999999999999999999999995 37889999999999987643
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|+.++.....++.+++..|.+.+..++.++|+++++.+|++||++.+
T Consensus 210 --------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 210 --------IAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 234567777777788899999999999999999999999999999988753
No 77
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=4.1e-44 Score=370.11 Aligned_cols=249 Identities=36% Similarity=0.571 Sum_probs=215.2
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
.++.+.++. .++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 356788888 6779999999996 69999999999999999999999999999999999999999999987511111111
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
......+.++ ..+.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|| +++++|++|..+|.
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2222333456 6799999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
+|++||+.++|+||+++||||+++++ +++++.+.+++++++. +|.
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~--------------------------------- 206 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPL--------------------------------- 206 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHH---------------------------------
Confidence 99999999999999999999999985 7999999999999987 332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 290 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 290 (721)
+...+|+.++.....++++.+..|...+...+.++|++|++++|++ |++.
T Consensus 207 ---a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 207 ---ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ---HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 2234566777776666889999999999999999999999999999 5543
No 78
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-44 Score=365.61 Aligned_cols=240 Identities=19% Similarity=0.252 Sum_probs=210.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (721)
|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56777 7899999999995 79999999999999999999999999999999999999999999875321 111222
Q ss_pred HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML 161 (721)
Q Consensus 85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l 161 (721)
.+..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 334555 6688999999999999999999999999999999999999999999999997 7899999996 8999999
Q ss_pred cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972 162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 241 (721)
+|++++|+||+++||||++ +++++++.++|+++++.+|.. .
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a------------------------------------~ 195 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQS------------------------------------Y 195 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHH------------------------------------H
Confidence 9999999999999999953 467899999999999887643 2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus 196 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 196 IAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 34567777777778899999999999999999999999999999998775
No 79
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.2e-44 Score=370.25 Aligned_cols=241 Identities=34% Similarity=0.544 Sum_probs=218.1
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (721)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (721)
.+++ +++|++|+|||| +.|++|.+++++|.++++.++.|+++++||++|.+++||+|.|++++... .......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence 3677 799999999999 78999999999999999999999999999999999999999999998775 22223344455
Q ss_pred HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHc
Q 004972 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLL 162 (721)
Q Consensus 86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~lt 162 (721)
...++ ..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ +.+|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66666 6799999999999999999999999999999999999999999999999996 8899999999999999999
Q ss_pred CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972 163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242 (721)
Q Consensus 163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 242 (721)
|++++|+||+++||||+|+|++++.+++.+++++++..++..+ .
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~------------------------------------~ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSAL------------------------------------R 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHH------------------------------------H
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHH------------------------------------H
Confidence 9999999999999999999999999999999999999876432 3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972 243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 286 (721)
Q Consensus 243 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 286 (721)
.+|+.++........+.++.|.+.+..++.++|+++++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 55777888778888999999999999999999999999999987
No 80
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-43 Score=362.71 Aligned_cols=235 Identities=26% Similarity=0.400 Sum_probs=204.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (721)
+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++++|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56777 7899999999995 6999999999999999999864 9999999999999999999985311 111222
Q ss_pred HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML 161 (721)
Q Consensus 85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l 161 (721)
...+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334555 6688999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972 162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 241 (721)
||++++|+||+++||||+|++ +. ++.++++++++.+|..+
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~------------------------------------ 192 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLAL------------------------------------ 192 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHH------------------------------------
Confidence 999999999999999999975 22 88999999999876432
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|+.++.. .+++++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus 193 ~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 193 QHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 3456666654 56889999999999999999999999999999998764
No 81
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-43 Score=366.07 Aligned_cols=247 Identities=25% Similarity=0.347 Sum_probs=213.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhcc-CCCc-cc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (721)
+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577888 7899999999995 79999999999999999999999999999999999999999999875421 1111 11
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++++ ..+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334455 6688999999999999999999999999999999999999999999999998 77888875 56899
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (721)
+|+++|++++|+||+++||||++++ ++.+++.++++++++.++..
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a--------------------------------- 207 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQG--------------------------------- 207 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence 9999999999999999999999974 59999999999999987642
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
...+|++++......+++.++.|...+..++.++++++++++|++||++++
T Consensus 208 ---~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 208 ---LAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred ---HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 335677888877888899999999999999999999999999999987653
No 82
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.7e-43 Score=361.61 Aligned_cols=242 Identities=21% Similarity=0.270 Sum_probs=216.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
|.++.+.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 5678888898 7899999999995 69999999999999999999999999999999999999999999876432211
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+. . .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ ++++++++|..+|
T Consensus 79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 3455 6689999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|++||++++|+||+++||||+|+|++++++++.++++++++.++.+
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------- 203 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHS-------------------------------- 203 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence 999999999999999999999999999999999999999999987643
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 284 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 284 (721)
...+|+.++.....++.++++.|.+.+..++.|+|+++++....
T Consensus 204 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 204 ----LVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ----HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 23567788888888999999999999999999999999998653
No 83
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.3e-43 Score=378.36 Aligned_cols=283 Identities=23% Similarity=0.328 Sum_probs=216.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc-
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS- 80 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~- 80 (721)
+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 5688888 7899999999995 6999999999999999999999999999999999 8999999999875422111000
Q ss_pred --ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 81 --~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
.+.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 1112223444 6688999999999999999999999999999999999999999999999997 889999987 78
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHH------------HHHhcC---c--------hhhhhhhccC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD 212 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~~a~~~---~--------~~~~~~~~~~ 212 (721)
|++|++||++++|+||+++||||+|+|++++.+...++++ .+.+.+ | ..+.+.+..
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 238 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG- 238 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999988776433221 111111 0 001111100
Q ss_pred CCCCcHHHHHHHH-----HHHHHHHHh-CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-H
Q 004972 213 KLGSLSEAREVLK-----LARLQAKKT-APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A 285 (721)
Q Consensus 213 ~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~-~ 285 (721)
.+.......++ .+.+..++. ...-.|+..+|++++.+...+++++++.|.+.+..++.++|+++++++|+ +
T Consensus 239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e 316 (342)
T PRK05617 239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID 316 (342)
T ss_pred --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence 01111111111 122222221 12233778889999998888999999999999999999999999999997 7
Q ss_pred h-hhhcCC
Q 004972 286 Q-RATSKV 292 (721)
Q Consensus 286 ~-r~~~~~ 292 (721)
| |++++.
T Consensus 317 k~r~p~~~ 324 (342)
T PRK05617 317 KDRNPKWS 324 (342)
T ss_pred CCCCCCCC
Confidence 6 666653
No 84
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.9e-43 Score=367.14 Aligned_cols=249 Identities=24% Similarity=0.307 Sum_probs=207.7
Q ss_pred cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-------CCCcCCCCchhhhhcc-
Q 004972 5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH- 74 (721)
Q Consensus 5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-------~~F~aG~Dl~~~~~~~- 74 (721)
+++++++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....
T Consensus 24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~ 103 (302)
T PRK08321 24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY 103 (302)
T ss_pred eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence 4677663 4789999999996 6999999999999999999999999999999988 5899999999763210
Q ss_pred ---CCC--cc-c--ccchH-HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcccc-
Q 004972 75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG- 143 (721)
Q Consensus 75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P~- 143 (721)
... .. . ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~ 182 (302)
T PRK08321 104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG 182 (302)
T ss_pred cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence 000 00 0 00011 11233 56889999999999999999999999999999999 69999999999999986
Q ss_pred --ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHH
Q 004972 144 --TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 221 (721)
Q Consensus 144 --~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 221 (721)
+++|+|++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.++..+
T Consensus 183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------- 246 (302)
T PRK08321 183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAM---------------- 246 (302)
T ss_pred hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHH----------------
Confidence 78899999999999999999999999999999999999999999999999999999886533
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 222 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
..+|++++..... ..+....|.+.+..++.++|+++++.+|++||++.+
T Consensus 247 --------------------~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 247 --------------------RMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred --------------------HHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 2445666554443 344455688999999999999999999999998775
No 85
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.1e-42 Score=375.45 Aligned_cols=285 Identities=24% Similarity=0.292 Sum_probs=213.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-cc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (721)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 45688888 7899999999996 699999999999999999999999999999999999999999999854221111 00
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI 157 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~ 157 (721)
........++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|. .++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111111233 5688999999999999999999999999999999999999999999999997 8899999985 899
Q ss_pred HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHH----------HHHHhc-Cc-------------hhhhhhhccCC
Q 004972 158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA----------LDIAAR-RK-------------PWIRSLHRTDK 213 (721)
Q Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a----------~~~a~~-~~-------------~~~~~~~~~~~ 213 (721)
+|++||++++|+||+++||||+|||++++.+.+.++. +.+.+. .. ..+...+.
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~--- 243 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFS--- 243 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhC---
Confidence 9999999999999999999999999988876322221 000000 00 00000000
Q ss_pred CCCcHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Q 004972 214 LGSLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLV 280 (721)
Q Consensus 214 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i 280 (721)
..+..+....+. .+.+..++....-| |...+|++++.+...+++++++.|.+....++. ++|++||+
T Consensus 244 ~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv 323 (379)
T PLN02874 244 KDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGI 323 (379)
T ss_pred CCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhcc
Confidence 001111111111 01122222222333 778889999999888999999999988888888 99999999
Q ss_pred HHHH-Hh-hhhcCCC
Q 004972 281 HVFF-AQ-RATSKVP 293 (721)
Q Consensus 281 ~aF~-~~-r~~~~~~ 293 (721)
++|+ +| |+|++.+
T Consensus 324 ~AflidK~r~P~w~~ 338 (379)
T PLN02874 324 RALVIDKDNAPKWNP 338 (379)
T ss_pred ceEEEcCCCCCCCCC
Confidence 9997 78 7776644
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4e-42 Score=383.69 Aligned_cols=252 Identities=15% Similarity=0.139 Sum_probs=217.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCC-CCcCCC
Q 004972 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (721)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-~~~v~~vVltg~g~-~F~aG~ 65 (721)
+++|.++.+ +++|++||||||+ . |+||.+|+.+|.+++++++. |+++|+|||||.|+ .||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 455666554 5789999999995 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC-Ccccccc-hHhhhhcCEEEee-------CCceEeCccc
Q 004972 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (721)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~~~~pe~ 136 (721)
|++.+.. .............+..+ ..|.++||||||+|| |+|+||| ++|+|+||+||++ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100111122333455 668999999999997 9999999 9999999999999 9999999999
Q ss_pred ccCcccc---ccccccc-cCHHHHHHH--HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004972 137 TLGVIPG---TQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 210 (721)
Q Consensus 137 ~~Gl~P~---~~~l~r~-~G~~~a~~l--~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 210 (721)
++|++|+ +++|+|+ +|..+|+++ ++||++++|+||+++||||+|||++++++++.++++++++.||.+
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a------ 490 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDA------ 490 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHH------
Confidence 9999997 8999998 799999997 589999999999999999999999999999999999999998753
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004972 211 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 286 (721)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~ 286 (721)
...+|++++.+...+++++ +..|.+.|..+++|+|++| ++++|++|
T Consensus 491 ------------------------------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 491 ------------------------------LTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred ------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 3356788888889999999 9999999999999999999 99999999
Q ss_pred hhhcCC
Q 004972 287 RATSKV 292 (721)
Q Consensus 287 r~~~~~ 292 (721)
|++...
T Consensus 541 r~~~f~ 546 (550)
T PRK08184 541 QKAQFD 546 (550)
T ss_pred CCCCCC
Confidence 998753
No 87
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-41 Score=356.20 Aligned_cols=237 Identities=25% Similarity=0.293 Sum_probs=202.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC---
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--- 76 (721)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999999 7899999999996 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccccc
Q 004972 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (721)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~ 138 (721)
.... .+ ...+.+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 01122334 56889999999999999999999999999999999999999999999
Q ss_pred Ccccc-ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc
Q 004972 139 GVIPG-TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 217 (721)
Q Consensus 139 Gl~P~-~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~ 217 (721)
|+.+. ++++++++|..++++|++||++++|+||+++||||+|||++++++++.++++++++.++..+
T Consensus 159 Gl~~~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~------------ 226 (288)
T PRK08290 159 GIPGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGL------------ 226 (288)
T ss_pred CcCcchHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHH------------
Confidence 98433 67789999999999999999999999999999999999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004972 218 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 275 (721)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~-~s~~ 275 (721)
..+|+.++..... ++++++..|...+...+ ++++
T Consensus 227 ------------------------~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 227 ------------------------RLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ------------------------HHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 3456677776665 68999999999999888 6776
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5e-42 Score=381.34 Aligned_cols=251 Identities=16% Similarity=0.128 Sum_probs=216.4
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCC-CcCCC
Q 004972 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (721)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~g~~-F~aG~ 65 (721)
+.+|.+..+ +++|++||||||+ . |+|+.+|+.+|.+++..++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 344555443 6889999999994 7 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE-CCcccccc-hHhhhhcCEEEe-------eCCceEeCccc
Q 004972 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (721)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~~~~pe~ 136 (721)
|++.+.. .............++++ ..|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAH-KDHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Ccccccc-ccchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 9984321 11111111112233455 66999999999999 89999999 999999999999 89999999999
Q ss_pred ccCcccc---cccccccc-CHHHH--HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004972 137 TLGVIPG---TQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 210 (721)
Q Consensus 137 ~~Gl~P~---~~~l~r~~-G~~~a--~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 210 (721)
++|++|+ +++|+|++ |..++ ++|++||++++|+||+++|||++|+|++++++++.++++++++.+|.++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~----- 487 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDAL----- 487 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHH-----
Confidence 9999997 89999998 99999 5599999999999999999999999999999999999999999987533
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004972 211 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 286 (721)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~ 286 (721)
..+|++++.+...+++.+ +..|.+.|..++.|+|++| ++++|++|
T Consensus 488 -------------------------------~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 488 -------------------------------TGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred -------------------------------HHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 355778888888999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004972 287 RATSK 291 (721)
Q Consensus 287 r~~~~ 291 (721)
|++..
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99864
No 89
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=322.40 Aligned_cols=242 Identities=29% Similarity=0.458 Sum_probs=217.0
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (721)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (721)
+.||.+|-+||| +.|+++..|+++|.++++++..|+.+|+|+|++ .++.||+|+||++-...+. .++..+......+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~-~Ev~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP-SEVTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH-HHHHHHHHHHHHH
Confidence 678999999999 689999999999999999999999999999975 5688999999999876543 2344444555566
Q ss_pred HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCc
Q 004972 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSI 166 (721)
Q Consensus 90 ~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~ 166 (721)
+ ..|+++|.||||+|+|.++|||+||+|+||+|++++++++|++|.+++++|| |+||||.+|...|+||++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 6 6699999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCCc----hHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972 167 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242 (721)
Q Consensus 167 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 242 (721)
++.||..+||||+||... ...+.+.++|++|.-+.|. |+.
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi------------------------------------avr 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI------------------------------------AVR 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch------------------------------------hhh
Confidence 999999999999999764 6777788888888766553 344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 243 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
.+|.+|+.+.+.++..++..|...+++...+.|--+++.+|.+||+|.-
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 5678899999999999999999999999999999999999999999864
No 90
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.9e-41 Score=339.70 Aligned_cols=199 Identities=30% Similarity=0.473 Sum_probs=176.8
Q ss_pred CcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972 4 PRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (721)
Q Consensus 4 ~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (721)
++|.++.. +++|++||||||+.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... ...
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~ 81 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QEA 81 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hhH
Confidence 55666663 4889999999998899999999999999999999999999999999999999999999754321 111
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
....+..++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +.++++++|..++
T Consensus 82 ~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 160 (222)
T PRK05869 82 DTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160 (222)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 11222334556 6689999999999999999999999999999999999999999999999997 6889999999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 204 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~ 204 (721)
++++++|++++|+||+++||||+|+|++++++++.++++++++.+|..
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a 208 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHA 208 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999988753
No 91
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=7.2e-41 Score=359.99 Aligned_cols=245 Identities=21% Similarity=0.325 Sum_probs=203.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (721)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++............
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4588888 7899999999995 6999999999999999999999999999999999999999999998643211111111
Q ss_pred chHH---HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 83 PDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 83 ~~~~---~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
...+ ..++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 1111 1233 5689999999999999999999999999999999999999999999999997 8999999995 89
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (721)
++|++||++++|+||+++||||++||++++ +++.+++.+++..+|..
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~a-------------------------------- 240 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSV-------------------------------- 240 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHH--------------------------------
Confidence 999999999999999999999999999998 67779999988766432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHhhhh
Q 004972 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRAT 289 (721)
Q Consensus 237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF---~~~r~~ 289 (721)
+..+|+.+... ..+...++..|...+..++.+++.++.+.+| .+||++
T Consensus 241 ----v~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~ 291 (401)
T PLN02157 241 ----VESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKD 291 (401)
T ss_pred ----HHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccch
Confidence 22344455443 2345567788899999999999999999999 554443
No 92
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-40 Score=348.47 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=175.9
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---
Q 004972 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (721)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--- 77 (721)
++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467899998 7899999999995 79999999999999999999999999999999999999999999985422110
Q ss_pred c----------------ccc-----cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc
Q 004972 78 D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (721)
Q Consensus 78 ~----------------~~~-----~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~ 136 (721)
. ... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 000 011223445 568899999999999999999999999999999999999999999
Q ss_pred ccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhh
Q 004972 137 TLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI 205 (721)
Q Consensus 137 ~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~ 205 (721)
++|.+|++.++++++|.++|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|..+
T Consensus 166 ~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~ 234 (302)
T PRK08272 166 RVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQL 234 (302)
T ss_pred hcccCChHHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 986667766788899999999999999999999999999999999999999999999999999887544
No 93
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.5e-39 Score=347.34 Aligned_cols=288 Identities=21% Similarity=0.293 Sum_probs=221.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
+.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 456788888 7899999999996 69999999999999999999999999999999999999999999985321111100
Q ss_pred ccchHH---HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972 81 LMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS 154 (721)
Q Consensus 81 ~~~~~~---~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~ 154 (721)
.....+ ..+. ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 001111 1222 4688999999999999999999999999999999999999999999999997 8999999997
Q ss_pred HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhcc---CC------------------
Q 004972 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK------------------ 213 (721)
Q Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~---~~------------------ 213 (721)
.+++|++||++++|++|+++||||++||++++.+.+.+++ +++..+|.......+. ..
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999888888 6665544333221110 00
Q ss_pred -CCCcHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004972 214 -LGSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 279 (721)
Q Consensus 214 -~~~~~~~~~~~~~---------~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 279 (721)
..++.+..+.+.. ++...+.....-| +...+.+.++++...++.+.++.|.+.-..++. ++|+.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 0011111111111 1111122222233 456778899999999999999999999999998 6999999
Q ss_pred HHHHHH-h-hhhcCCC
Q 004972 280 VHVFFA-Q-RATSKVP 293 (721)
Q Consensus 280 i~aF~~-~-r~~~~~~ 293 (721)
|+|-+= | ++|+|+|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 998876 3 3455444
No 94
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-39 Score=337.51 Aligned_cols=245 Identities=21% Similarity=0.244 Sum_probs=194.4
Q ss_pred CcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeC-CCCCcCCCCchhhhhccC
Q 004972 4 PRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHG 75 (721)
Q Consensus 4 ~~v~~~~~-~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~ 75 (721)
.++.++.+ +++|++|||| | +.|++|.+|+.+|.++++++++ |+++++|||||. |++||+|+|++++.....
T Consensus 15 ~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~ 93 (287)
T PRK08788 15 SQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR 93 (287)
T ss_pred CceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence 34444443 6889999996 6 6899999999999999999998 899999999999 789999999998753211
Q ss_pred CCcccccchHH---HHHHHHHHh---hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccc
Q 004972 76 AGDVSLMPDVS---VELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQR 146 (721)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~l~---~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~ 146 (721)
......+.... .+.+ ..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~ 172 (287)
T PRK08788 94 AGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSF 172 (287)
T ss_pred ccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHH
Confidence 11111111111 1222 2233 799999999999999999999999999999999999999999999997 789
Q ss_pred cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHH
Q 004972 147 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL 226 (721)
Q Consensus 147 l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (721)
+++++|..+|++|++||+.++|+||+++||||+++|++++++++.+++++|+.. +...
T Consensus 173 l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~--------------------- 230 (287)
T PRK08788 173 LARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGW--------------------- 230 (287)
T ss_pred HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHH---------------------
Confidence 999999999999999999999999999999999999999999999999999976 3211
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHhh
Q 004972 227 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFAQR 287 (721)
Q Consensus 227 ~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~-~~~~i~aF~~~r 287 (721)
..+|+..+.....++++.++.|...+..++++.+ ..+-|..|....
T Consensus 231 ---------------~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (287)
T PRK08788 231 ---------------RAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRAQ 277 (287)
T ss_pred ---------------HHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 1223333333446788889988887777666654 556677776543
No 95
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-40 Score=333.10 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=173.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (721)
|+ +.+.++. +++|++||||||+.|++|.+|+.+|.++++.++ +++++||+||.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 54 4688888 789999999999889999999999999999998 567999999999999999999988542 11111
Q ss_pred ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCcccc---ccccccccCHHHH
Q 004972 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
.+.....+++ +++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+ +.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223334555 6688999999999999999999999999999999999 999999999999754 6778899999999
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 204 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~ 204 (721)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a 201 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGA 201 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999987653
No 96
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.8e-38 Score=335.36 Aligned_cols=263 Identities=25% Similarity=0.347 Sum_probs=244.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
|++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..+..+.+.|.++..+....+.++..++++ +.++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999999899889889999998877778888889988888 4679
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+||+|+|++.+.++.+++++.+.+++++++.|+||+++++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004972 464 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA-- 535 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~-- 535 (721)
++++.+++|++.+|++|+++ ++.+||++||++.++++||+.++++| +|+++||.++ .++|++ +|||.++|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58999999999999999999999996 5999999999 889998 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHc
Q 004972 536 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKS 567 (721)
Q Consensus 536 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~ 567 (721)
|++.+......++.++.+..+ |+|++++|+++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 899999999999988877555 88888888873
No 97
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-37 Score=334.06 Aligned_cols=278 Identities=22% Similarity=0.256 Sum_probs=212.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc---c
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (721)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ .
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999996 699999999999999999999999999999999999999999999865321111 1
Q ss_pred cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
..+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|+|+.|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11112222333 5678999999999999999999999999999999999999999999999997 8899999997 49
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhh----hcc------------------CCC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT------------------DKL 214 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~----~~~------------------~~~ 214 (721)
.+|++||++++|++|+++||+|++||.+++ +.+.+.+.++...++..+... ... =..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887 556666655544332211110 000 001
Q ss_pred CCcHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004972 215 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 281 (721)
Q Consensus 215 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~ 281 (721)
.++.+....+.. +.+..+.....-| +...+.+.++++...++++.++.|.+.-..++ .++|+.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 122222122111 1111122222233 56778889999999999999999999988887 4899999999
Q ss_pred HHHH
Q 004972 282 VFFA 285 (721)
Q Consensus 282 aF~~ 285 (721)
|-+=
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 8875
No 98
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.1e-37 Score=324.63 Aligned_cols=188 Identities=25% Similarity=0.356 Sum_probs=163.7
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccC--CCcccccchHHHHHH
Q 004972 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV 90 (721)
Q Consensus 15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 90 (721)
+++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ......+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 4669999995 6999999999999999999999999999999999 69999999998865321 111111222233455
Q ss_pred HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcC
Q 004972 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSIT 167 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~ 167 (721)
+.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++|++++|..+|++|+++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6689999999999999999999999999999999999999999999999997 889999999999999999999999
Q ss_pred HHHHHHcCCccEEcCCchH------------HHHHHHHHHHHHhcCch
Q 004972 168 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 203 (721)
Q Consensus 168 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~~a~~~~~ 203 (721)
|+||+++||||+|||+.++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999888 77788888777776543
No 99
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=7.7e-38 Score=318.46 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=168.0
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCCcCCCCchhhhhccCCC-cccccc
Q 004972 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAG-DVSLMP 83 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~-~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 83 (721)
++++. +++|++|+||||+.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++....... ....+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 56777 789999999999889999999999999999999998875 777799999999999999875321111 111122
Q ss_pred hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcc-cc--ccccccccCHHHH-HH
Q 004972 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PG--TQRLPRLVGLSKA-IE 158 (721)
Q Consensus 84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~-P~--~~~l~r~~G~~~a-~~ 158 (721)
..+..++ ..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++ |+ +.++++++|..++ ++
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence 2334555 66899999999999999999999999999999998 568999999999996 76 7899999999999 69
Q ss_pred HHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCc
Q 004972 159 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK 202 (721)
Q Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~ 202 (721)
|+++|++++|+||+++||||+|+|+ +++++++.++|+++++.++
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999985 6899999999999998754
No 100
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-38 Score=297.12 Aligned_cols=251 Identities=24% Similarity=0.338 Sum_probs=215.7
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC----
Q 004972 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---- 75 (721)
Q Consensus 3 ~~~v~~~~--~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~---- 75 (721)
++.+.+.+ ....|..+.|||| +.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+.....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 44444543 2566999999999 6899999999999999999999999999999999999999999877643211
Q ss_pred CCc-------ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cc
Q 004972 76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQ 145 (721)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~ 145 (721)
..+ ...++..++..+ ..|++||||+|++|||+|+|+|+.|..|||+|+++++|.|..-|+.+|+..+ .+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 111 223334455666 6799999999999999999999999999999999999999999999999987 79
Q ss_pred ccccccC-HHHHHHHHHcCCCcCHHHHHHcCCccEEcC-CchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHH
Q 004972 146 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 223 (721)
Q Consensus 146 ~l~r~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (721)
|||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+.+
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 999999999999999999999999999996 478999999999999999986432
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972 224 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 290 (721)
Q Consensus 224 ~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 290 (721)
.+|+.+..+.+++.++.|..-.-+-...+.|+|..+.+.+-++|+++.
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 456778888889999999888888888888999999999998876655
No 101
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=2e-36 Score=294.33 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 386 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 386 (721)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++.+.+..+++++++++++.+.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998877999
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHH
Q 004972 387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 466 (721)
Q Consensus 387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~ 466 (721)
+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 004972 467 LDLMTVGKIIKKVPVVVGNC 486 (721)
Q Consensus 467 ~~~~~l~~~lG~~~v~v~d~ 486 (721)
+.+..|++.+||.|++++|.
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
No 102
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-36 Score=284.63 Aligned_cols=253 Identities=29% Similarity=0.383 Sum_probs=199.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--C-CCCcCCCCchhhhhccCCCc
Q 004972 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--g-~~F~aG~Dl~~~~~~~~~~~ 78 (721)
++.|+++..-++|+.||+|||. +|++.+..+.||.+++..++.|++|.+|||||. | .+||+|+|-+--.....-..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 4668888844899999999995 799999999999999999999999999999985 3 68999999875433110000
Q ss_pred ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~ 155 (721)
.....+...--+.+.|+.+||||||.|+|.++|||-.|-+.||+-||+++|+|+....++|-+-+ +..|.|.+|..+
T Consensus 97 d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKk 176 (282)
T COG0447 97 DDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKK 176 (282)
T ss_pred CccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhh
Confidence 01111111111336789999999999999999999999999999999999999999999998876 899999999999
Q ss_pred HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972 156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235 (721)
Q Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (721)
|+|+-+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.+++-
T Consensus 177 ArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~---------------------------- 228 (282)
T COG0447 177 AREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM---------------------------- 228 (282)
T ss_pred hHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999854331
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972 236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 292 (721)
Q Consensus 236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 292 (721)
+|-+.+ ....++.-.-+....+-.-...++|++|+..||++||+|...
T Consensus 229 --------LK~Afn-ad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~ 276 (282)
T COG0447 229 --------LKAAFN-ADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS 276 (282)
T ss_pred --------HHHHhc-CCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence 111111 111122111122223333456799999999999999998643
No 103
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=5.5e-35 Score=328.18 Aligned_cols=243 Identities=25% Similarity=0.332 Sum_probs=207.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++||+|||+|+||++||..|+++|++|++||++++.++...+.++....... .+... .....+++++++++ +.++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence 5789999999999999999999999999999999998765433222211111 11111 01123457778888 5789
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 463 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~ 463 (721)
+||+||||+||+.++|+.+++++.+++++++||+|+||+++++++++.+..+.++++.|||||++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhch
Q 004972 464 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY 537 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~Gl 537 (721)
++++.+.+|++.+|+.++++ ++.+||++||++.++++||+.++++| +|+++||+++ .++|++ +|||+++|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 99999999999999999999 69999999999999999999999996 6999999999 788875 799999999985
Q ss_pred -HHHHHHHHHHHHhC
Q 004972 538 -GVAAATSKEFDKAF 551 (721)
Q Consensus 538 -d~~~~~~~~l~~~~ 551 (721)
+.+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 45566666665544
No 104
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-35 Score=282.79 Aligned_cols=249 Identities=22% Similarity=0.294 Sum_probs=218.9
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 78 (721)
|.++.+.++. .+++..|.+| ||+ .|+++.+++.++..++....+|+++..+|++|.|++||+|.|+..+......+
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d- 81 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDD- 81 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCc-
Confidence 4567788888 8999999999 995 69999999999999999999999999999999999999999999887643332
Q ss_pred ccccchHH----H--HHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccc
Q 004972 79 VSLMPDVS----V--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPR 149 (721)
Q Consensus 79 ~~~~~~~~----~--~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r 149 (721)
........ . ..+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|..|. ++.+|+
T Consensus 82 ~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~ 161 (266)
T KOG0016|consen 82 ANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPK 161 (266)
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehH
Confidence 11111111 1 12346788999999999999999999999999999999999999999999999997 899999
Q ss_pred ccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004972 150 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 229 (721)
Q Consensus 150 ~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (721)
++|...|.||++.|++++|+||.+.|||++++|.+++.+.+..-++++++.+|..++
T Consensus 162 imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~----------------------- 218 (266)
T KOG0016|consen 162 IMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL----------------------- 218 (266)
T ss_pred hhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999998775332
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004972 230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 287 (721)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r 287 (721)
.+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus 219 -------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 -------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred -------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 346777777777889999999999999999999999999999764
No 105
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=267.77 Aligned_cols=246 Identities=23% Similarity=0.334 Sum_probs=208.7
Q ss_pred EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHH
Q 004972 8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (721)
Q Consensus 8 ~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (721)
++. +++|-.|+|++|+ +|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|+||+|+......+.....+...
T Consensus 36 ~~~-~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc 114 (287)
T KOG1682|consen 36 VKE-HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTC 114 (287)
T ss_pred ccc-ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHH
Confidence 344 6899999999995 79999999999999999988888999999999999999999999997654333233333334
Q ss_pred HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcCC
Q 004972 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLSK 164 (721)
Q Consensus 87 ~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg~ 164 (721)
.+.+ .-|+++|+|+||-|||.+..+||.|...||++|++++++|..|..++|++-. -..+.|.+++..+++|++||+
T Consensus 115 ~dvm-n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~ 193 (287)
T KOG1682|consen 115 TDVM-NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGL 193 (287)
T ss_pred HHHH-HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCC
Confidence 4556 4599999999999999999999999999999999999999999999999766 566889999999999999999
Q ss_pred CcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004972 165 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 244 (721)
Q Consensus 165 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 244 (721)
+++++||+..|||.+|||++++..++.+++..|-..+...+. .-
T Consensus 194 Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------------------------------lg 237 (287)
T KOG1682|consen 194 PITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------------------------------LG 237 (287)
T ss_pred CCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------------------------------HH
Confidence 999999999999999999999999999999999887643221 11
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972 245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291 (721)
Q Consensus 245 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 291 (721)
|+-......++-.+++....+.+...++-.|++|+|.+|++||.+.+
T Consensus 238 k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 238 KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 22233334456677888888888899999999999999999998765
No 106
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.6e-34 Score=321.04 Aligned_cols=201 Identities=21% Similarity=0.294 Sum_probs=172.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCC-CCCcCCCCc
Q 004972 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (721)
Q Consensus 1 m~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~g-~~F~aG~Dl 67 (721)
|+++++.+++ +++|++|||||| +.|++|.+|+.+|.+++++++ +++++++|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6688999999 789999999954 569999999999999999999 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccch---HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccc-cCcc
Q 004972 68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (721)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~-~Gl~ 141 (721)
+++....... ...+.. .....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875321111 001111 11122335677899999999999999999999999999999987 899999997 9999
Q ss_pred cc---ccccc--cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch
Q 004972 142 PG---TQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 203 (721)
Q Consensus 142 P~---~~~l~--r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 203 (721)
|+ +++++ +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|++|++.+|.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 97 77787 7899999999999999999999999999999999999999999999999998864
No 107
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.8e-34 Score=319.49 Aligned_cols=199 Identities=22% Similarity=0.310 Sum_probs=170.1
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeC-CCCCcCCCCchh
Q 004972 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (721)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~-g~~F~aG~Dl~~ 69 (721)
+++|.+++ +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 46788998 789999999996 469999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchHHH---HHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccc-cCcccc
Q 004972 70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG 143 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~-~Gl~P~ 143 (721)
+....... ......... ..+.+.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 75321111 011111111 12224577899999999999999999999999999999986 799999997 999997
Q ss_pred ---ccccc--cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch
Q 004972 144 ---TQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 203 (721)
Q Consensus 144 ---~~~l~--r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 203 (721)
+++++ +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|.
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 67776 7999999999999999999999999999999999999999999999999998763
No 108
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=273.24 Aligned_cols=230 Identities=26% Similarity=0.413 Sum_probs=213.0
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh----cCCCCHHHHHHhhcCceeccCc
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT----RGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
.+.||+|+|.|.+|+++|..++..||+|.+||+.++++.-+.+.+++.+..+-+ +|.++. ++.+..|+.++++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l 78 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSL 78 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccH
Confidence 367999999999999999999999999999999999999999998888887755 455654 4566788899998
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecC
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT 458 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~ 458 (721)
+.+++|=.|-|||||++.+|++++++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.
T Consensus 79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa 158 (313)
T KOG2305|consen 79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA 158 (313)
T ss_pred HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHH
Q 004972 459 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL 532 (721)
Q Consensus 459 ~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~---Gpf~~~ 532 (721)
+-|+|+++++.+++++.+|..||.. ++.-||..||++++++||-.+++..|+ +..|+|.+| .|+|.+. ||++.+
T Consensus 159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence 9999999999999999999999987 789999999999999999999999987 999999999 9999763 999998
Q ss_pred Hhhc
Q 004972 533 DLAG 536 (721)
Q Consensus 533 D~~G 536 (721)
.+--
T Consensus 239 HLNA 242 (313)
T KOG2305|consen 239 HLNA 242 (313)
T ss_pred hcCc
Confidence 8754
No 109
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.4e-34 Score=284.54 Aligned_cols=189 Identities=44% Similarity=0.701 Sum_probs=169.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004972 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (721)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (721)
+.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.++.||+|.|++++........ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35677 6799999999997 799999999999999999999999999999999999999999999876433221 22344
Q ss_pred hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHH
Q 004972 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMM 160 (721)
Q Consensus 84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ 160 (721)
....+++ +.+.++|||+||++||+|.|+|++++++|||||++++++|++||+++|++|+ +.++++++|...+.+++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 4455666 6688999999999999999999999999999999999999999999999976 89999999999999999
Q ss_pred HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHH
Q 004972 161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 196 (721)
Q Consensus 161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 196 (721)
++|++++++||+++||||++++.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999998875
No 110
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=252.90 Aligned_cols=288 Identities=23% Similarity=0.308 Sum_probs=211.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCcCCCCchhhhhccCCCcccc
Q 004972 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL 81 (721)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (721)
+.|.++. .+...+||||||+ .||+|.+|+..+.-.+..++.++.+++||+.|. +++||+|+|++.......+.+...
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 5688888 7889999999997 699999999999999999999999999999887 589999999986654332222111
Q ss_pred cchHHHHH--HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972 82 MPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA 156 (721)
Q Consensus 82 ~~~~~~~~--~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a 156 (721)
....+.+. +...|.++.||.||.+||.++|||+.|+...-||||++++.|++||+.+|++|+ +++++|+.| ...
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg 195 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLG 195 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHH
Confidence 11222211 224688999999999999999999999999999999999999999999999998 899999999 889
Q ss_pred HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhh----hhc---------------cC---CC
Q 004972 157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS----LHR---------------TD---KL 214 (721)
Q Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~----~~~---------------~~---~~ 214 (721)
.+|.+||+++++.+|+..||.++-||.+.+..--.++...+...+...+.. ... -+ ..
T Consensus 196 ~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~ 275 (401)
T KOG1684|consen 196 LYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSA 275 (401)
T ss_pred HhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhcc
Confidence 999999999999999999999999998654322222221111111011110 000 00 01
Q ss_pred CCcHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004972 215 GSLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF 283 (721)
Q Consensus 215 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF 283 (721)
.+..+..+.++ -+..+.|+...--| +...+.+.+.++...++++.+..|.+.-.+...+.|+.||++|-
T Consensus 276 ~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~ 355 (401)
T KOG1684|consen 276 NTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAV 355 (401)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhhe
Confidence 12222222111 11112222223334 66778899999999999999999999999999999999999987
Q ss_pred HH--hhhhcCCC
Q 004972 284 FA--QRATSKVP 293 (721)
Q Consensus 284 ~~--~r~~~~~~ 293 (721)
+- .++|+|.|
T Consensus 356 LIDKd~~PKW~p 367 (401)
T KOG1684|consen 356 LIDKDQNPKWDP 367 (401)
T ss_pred eecCCcCCCCCC
Confidence 63 23344443
No 111
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=3.4e-26 Score=256.45 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=147.8
Q ss_pred CCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004972 410 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 489 (721)
Q Consensus 410 ~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf 489 (721)
+.+++++++..++.+.++.+....+|++++|+|||+|++.++++||+++..|++++++.+..|++.+||.|++++|.|||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 45677777777766667776666789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHH
Q 004972 490 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLK 566 (721)
Q Consensus 490 i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~ 566 (721)
|+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|.++++++.+++.+++ ++.|++++++|++
T Consensus 418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~ 497 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence 999999999999999999998 899999999 8999999999999999999999999999999987 4458999999999
Q ss_pred cCC
Q 004972 567 SGR 569 (721)
Q Consensus 567 ~G~ 569 (721)
+|.
T Consensus 498 ~G~ 500 (507)
T PRK08268 498 LGL 500 (507)
T ss_pred cCC
Confidence 875
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.91 E-value=1e-24 Score=190.68 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.5
Q ss_pred chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004972 488 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 564 (721)
Q Consensus 488 gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 564 (721)
|||+||++.++++||++++++|+ +|++||+++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 7899999999999999999999999999999988855 79999999
Q ss_pred HHcCCCCcccCcccccc
Q 004972 565 LKSGRNGKANGKGLYTY 581 (721)
Q Consensus 565 v~~G~~G~k~g~GfY~y 581 (721)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 113
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.86 E-value=2.5e-21 Score=216.60 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=113.4
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004972 451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 528 (721)
Q Consensus 451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gp 528 (721)
+.+||+++..|++++++.+..|++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCC
Q 004972 529 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR 569 (721)
Q Consensus 529 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~ 569 (721)
|+++|.+|+|+++++++++++.+++ ++.|+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999986 4458999999999875
No 114
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.79 E-value=2e-19 Score=157.16 Aligned_cols=89 Identities=34% Similarity=0.518 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCC-CCCCHH
Q 004972 618 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF 696 (721)
Q Consensus 618 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~ 696 (721)
++|+||++.+++|||++++++|++ |++|||.+++.|+|||. |||+++|.+|++++.++++.+.+.+++. +.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 468999999999999999999998 99999999999999997 9999999999999999999999999985 889999
Q ss_pred HHHHH-------HcCCCCcCC
Q 004972 697 LEERA-------TKGIPLSAP 710 (721)
Q Consensus 697 l~~~~-------~~g~~f~~~ 710 (721)
+++|+ |+|+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 99999 789999998
No 115
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=164.03 Aligned_cols=92 Identities=29% Similarity=0.430 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP 693 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p 693 (721)
++++|+||+|.++++||+++++.|.+ +-+|||.+|.+|.|||+ |||+++|.+|+|+..-+|+-|.+.+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 68999999999999999999999999 99999999999999999 999999999999999999999999954 8999
Q ss_pred CHHHHHHH-------HcCCCCcCCC
Q 004972 694 SRFLEERA-------TKGIPLSAPV 711 (721)
Q Consensus 694 ~~~l~~~~-------~~g~~f~~~~ 711 (721)
+|+|.+++ |+|+|||+|+
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 99999999 7899999994
No 116
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.74 E-value=1.2e-17 Score=170.88 Aligned_cols=189 Identities=19% Similarity=0.181 Sum_probs=139.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||++||+|.||.+||.+|.++||+|++||+++++..... ...| .....+..+.+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence 4899999999999999999999999999999999843221 1222 11122333778999
Q ss_pred CEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCCCe-------eE
Q 004972 386 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL-------LE 454 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~~l-------vE 454 (721)
|+||.|||.+.++...++. .+.+.+++++++++++|.-+.+ ++++.+. -.|.+|.+.|-.+.. +.
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtLt 134 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTLT 134 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCceE
Confidence 9999999988888777774 5888889999998755543332 3343332 226777765543322 44
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 523 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G 523 (721)
|+.|. +++.+++++++++.+|++++++++. | -++|+++... +.||+.+.+. |++++.+..++ .+.+
T Consensus 135 imvGG--~~~~f~r~~pvl~~~g~~i~~~G~~-G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~ 211 (286)
T COG2084 135 IMVGG--DAEAFERAKPVLEAMGKNIVHVGPV-GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA 211 (286)
T ss_pred EEeCC--CHHHHHHHHHHHHHhcCceEEECCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence 44442 8999999999999999999999876 4 4678876544 4599999988 99999999999 5443
No 117
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.73 E-value=1.2e-17 Score=162.75 Aligned_cols=141 Identities=19% Similarity=0.156 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccc
Q 004972 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (721)
Q Consensus 31 ~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~ 110 (721)
-.+.+|.++++++++|+++++|||++ ||.|+|+.... ...+.+ +.+.+++||+||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 35689999999999999999999997 68898876531 122345 5577899999999999999
Q ss_pred ccchHhhhhcCEEEeeCCceEeCcccccCcccc-----------ccccccccC--HHHHHHHHHcCCCcCHHHHHHcCCc
Q 004972 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-----------TQRLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 177 (721)
Q Consensus 111 GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~-----------~~~l~r~~G--~~~a~~l~ltg~~~~a~eA~~~Glv 177 (721)
|+|+.|+++||+++++++++|+++.+..+..+. ...+++..| .....+++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 999999999999999999999999877664332 124444545 8889999999999999999999999
Q ss_pred cEEcCCchHHHH
Q 004972 178 DAVVTSEELLKV 189 (721)
Q Consensus 178 ~~vv~~~~l~~~ 189 (721)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999988877653
No 118
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.70 E-value=6.3e-17 Score=158.74 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=116.0
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
++|.++.. ++......+.+.++.+++++ ++.|+|.=. |.|+++.. ...++ +.|.
T Consensus 2 ~vv~i~g~----I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~----------------~~~i~-~~l~ 55 (187)
T cd07020 2 YVLEINGA----ITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDS----------------TREIV-QAIL 55 (187)
T ss_pred EEEEEeeE----EChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence 55666543 66777889999999998665 787887521 33444332 12344 5577
Q ss_pred hCCCcEEEEEC---CcccccchHhhhhcCEEEeeCCceEeCcccccCcccc-----------------ccccccccCH--
Q 004972 96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-----------------TQRLPRLVGL-- 153 (721)
Q Consensus 96 ~~~~p~Iaav~---G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~-----------------~~~l~r~~G~-- 153 (721)
.+||||||+|+ |+|.|||+.++++||+++++++++|++++...+..+. ...+++..|.
T Consensus 56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 135 (187)
T cd07020 56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA 135 (187)
T ss_pred hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 89999999999 9999999999999999999999999999998554332 2367888887
Q ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEEcCCc-hHHH
Q 004972 154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 188 (721)
Q Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~-~l~~ 188 (721)
.++.+++++|+.++|+||+++||||++++++ +++.
T Consensus 136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 136 EWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 6899999999999999999999999999876 5554
No 119
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.69 E-value=1.3e-16 Score=168.37 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=135.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 386 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 386 (721)
||+|||+|.||.+||..|++.|++|++||+++++++.+. +.|. ...++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876642 1221 11122226678999
Q ss_pred EEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCC-------CCeeE
Q 004972 387 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE 454 (721)
Q Consensus 387 lVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~-------~~lvE 454 (721)
+||+|+|++..++..++. .+...++++++|++.+ +..+. ++.+.+... |+||.++|.. ...++
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMS-SISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999987776666553 3566778888887544 44443 444444322 4555443322 12245
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 523 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~g---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G 523 (721)
++.+ .++++++.++++++.+|+.++++++ .+| +++|+++.+. ++|++.+++. |++++++..++ .+.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3689999999999999999999975 455 5889887765 7899999987 99999999999 4444
No 120
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=6.3e-17 Score=170.43 Aligned_cols=94 Identities=28% Similarity=0.378 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 695 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 695 (721)
.++++.||++++++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+.+.++++|.|++
T Consensus 183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 258 (288)
T PRK09260 183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP 258 (288)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence 47899999999999999999999997 99999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCCCcCCCCC
Q 004972 696 FLEERA-------TKGIPLSAPVSS 713 (721)
Q Consensus 696 ~l~~~~-------~~g~~f~~~~~~ 713 (721)
+|.+|+ |+|+|||+|++.
T Consensus 259 ~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 259 LLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHCCCCccccCCEEEECCCC
Confidence 999999 789999999664
No 121
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.69 E-value=6.7e-16 Score=163.48 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=137.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++||+|||+|.||.++|..+++.|++|++||++++..+... +.+ +..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 35899999999999999999999999999999998866532 111 2233444 4568
Q ss_pred CCCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Ce
Q 004972 384 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL 452 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~-------~l 452 (721)
+||+||+|+|++..++..++ ..+.+.++++++|++.++..+.. ++.+.+... |.||.++|..+ ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999998777665554 34677788899887544433322 444444322 56776655332 23
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh---hhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 522 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi---~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~ 522 (721)
++++.+. +++.++.+.++++.+|+.++++++ .+|++ +|+++.+ .++|++.++++ |+++++++.++ .++
T Consensus 134 l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 5566553 689999999999999999999975 45664 6776555 47899999987 89999999998 444
Q ss_pred C
Q 004972 523 G 523 (721)
Q Consensus 523 G 523 (721)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 3
No 122
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=1.5e-16 Score=166.63 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 694 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 694 (721)
+++++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus 188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~ 263 (286)
T PRK07819 188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP 263 (286)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence 47899999999999999999999997 89999999999999998 999999999999999999999999886 88999
Q ss_pred HHHHHHH-------HcCCCCcCC
Q 004972 695 RFLEERA-------TKGIPLSAP 710 (721)
Q Consensus 695 ~~l~~~~-------~~g~~f~~~ 710 (721)
++|++|+ |+|+|||+|
T Consensus 264 ~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 264 PLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHCCCCcccCCCEeccC
Confidence 9999999 689999998
No 123
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=1.8e-16 Score=166.50 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=87.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCC
Q 004972 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP 693 (721)
Q Consensus 615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p 693 (721)
-++++|.||++++++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|++.+.++++.+.+.+++ +|+|
T Consensus 183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 258 (282)
T PRK05808 183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP 258 (282)
T ss_pred CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence 467999999999999999999999998 89999999999999998 999999999999999999999999986 8899
Q ss_pred CHHHHHHH-------HcCCCCcCC
Q 004972 694 SRFLEERA-------TKGIPLSAP 710 (721)
Q Consensus 694 ~~~l~~~~-------~~g~~f~~~ 710 (721)
+++|++|+ |+|+|||+|
T Consensus 259 ~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 259 CPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred CHHHHHHHHCCCCccccCCcccCC
Confidence 99999999 679999998
No 124
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.65 E-value=7.2e-15 Score=153.96 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=119.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 386 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 386 (721)
||+|||+|.||+++|..|.++|++|++||++++.++.+.+ .|.++ ..+++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776532 22111 1233445678999
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCeeE
Q 004972 387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 454 (721)
Q Consensus 387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~------------~~~lvE 454 (721)
+||+|+| .....++++++.+.++++++|++ +++.....+........+|++.||+.++. .++.+-
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 56666788999999988888755 54555555554444455799999975442 344566
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
+++++.++++.++.+.++++.+|+.++++++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8889999999999999999999999998853
No 125
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.64 E-value=3.7e-16 Score=161.59 Aligned_cols=94 Identities=24% Similarity=0.412 Sum_probs=88.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhC--CCCC
Q 004972 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK 692 (721)
Q Consensus 615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~ 692 (721)
-++++|.||++.++++||++++.+|++ ++++||.+|.+|+|||+ |||+++|.+|+|..++.++.+.+.++ +.+.
T Consensus 183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~ 258 (307)
T COG1250 183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR 258 (307)
T ss_pred CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence 468999999999999999999999999 99999999999999998 99999999999999999999998888 3788
Q ss_pred CCHHHHHHH-------HcCCCCcCCCC
Q 004972 693 PSRFLEERA-------TKGIPLSAPVS 712 (721)
Q Consensus 693 p~~~l~~~~-------~~g~~f~~~~~ 712 (721)
|++++++|+ |+|+|||+|++
T Consensus 259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 259 PPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred ccHHHHHHHhcccccccCCCcceeccc
Confidence 999999999 78999999975
No 126
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.63 E-value=8.9e-16 Score=162.34 Aligned_cols=94 Identities=24% Similarity=0.370 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 694 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 694 (721)
+++++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC 260 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence 46899999999999999999999998 89999999999999998 999999999999999999999999886 89999
Q ss_pred HHHHHHH-------HcCCCCcCCCCC
Q 004972 695 RFLEERA-------TKGIPLSAPVSS 713 (721)
Q Consensus 695 ~~l~~~~-------~~g~~f~~~~~~ 713 (721)
++|++|+ |+|+|||+|.+.
T Consensus 261 ~~l~~~~~~g~~G~k~g~Gfy~y~~~ 286 (295)
T PLN02545 261 PLLVQYVDAGRLGRKSGRGVYHYDGK 286 (295)
T ss_pred HHHHHHHHCCCCcccCCCeeeECCCC
Confidence 9999999 678999999553
No 127
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.61 E-value=2.1e-15 Score=158.78 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCC--CC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP 693 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 693 (721)
.++++.||++.+++|||++++++|++ +++|||.++..|+|||. |||+++|.+|+|.++.+++.+.+.+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999999999999999 99999999999999998 99999999999999999999999888743 48
Q ss_pred CHHHHHHH-------HcCCCCcCCC
Q 004972 694 SRFLEERA-------TKGIPLSAPV 711 (721)
Q Consensus 694 ~~~l~~~~-------~~g~~f~~~~ 711 (721)
+++|++|+ |+|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 89999999 7899999993
No 128
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.60 E-value=3.7e-14 Score=147.86 Aligned_cols=184 Identities=19% Similarity=0.137 Sum_probs=138.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 379 (721)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+. +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765431 112 2333444
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cC
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 458 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~ 458 (721)
+.+++||+||+|++ ++...+++.++.+.++++++|+|.++++++.++....... ++++.+|..|......+.++ .+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 55789999999996 6778888888888888888888888999999888776544 78889998888777666644 57
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC--------CchhhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972 459 ERTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 519 (721)
Q Consensus 459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--------~gfi~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~ 519 (721)
..++++..+.++++++.+|. ++++.+. .| -...+++ ++.|++. ....|+++++.-+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g-~g~a~~~-~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSG-SGPAYIF-LAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhc-CHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7776441 11 1112222 2223222 334599999988887
No 129
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.5e-15 Score=158.63 Aligned_cols=94 Identities=23% Similarity=0.323 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 694 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 694 (721)
.++++.||++.+++|||+.++++|++ ++++||.++++|+|||. |||+++|.+|++.+.++++.+.+.+++ +|+|+
T Consensus 185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 260 (292)
T PRK07530 185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC 260 (292)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 35899999999999999999999998 99999999999999997 999999999999999999999998876 89999
Q ss_pred HHHHHHH-------HcCCCCcCCCCC
Q 004972 695 RFLEERA-------TKGIPLSAPVSS 713 (721)
Q Consensus 695 ~~l~~~~-------~~g~~f~~~~~~ 713 (721)
++|++|+ |+|+|||+|++.
T Consensus 261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 261 PLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999 899999999544
No 130
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.58 E-value=3.2e-15 Score=157.72 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 694 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 694 (721)
.++++.||++.+++|||++++++|++ |++|||.+++.++|||. |||+++|.+|+|.+.++++.+.+.+++ +|.|+
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 262 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP 262 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence 57899999999999999999999999 99999999999999998 999999999999999999999999886 78999
Q ss_pred HHHHHHH-------Hc-----CCCCcCC
Q 004972 695 RFLEERA-------TK-----GIPLSAP 710 (721)
Q Consensus 695 ~~l~~~~-------~~-----g~~f~~~ 710 (721)
++|++|+ |+ |+|||+|
T Consensus 263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999 67 8999998
No 131
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.58 E-value=5.4e-14 Score=152.82 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=124.7
Q ss_pred CceeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972 304 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 382 (721)
Q Consensus 304 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 382 (721)
.+++|+||| +|.||+++|..|.++|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 568999999 9999999999999999999999986310 0 0 0235
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCeeE--EecC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 458 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvE--iv~~ 458 (721)
++||+||+|+| ......+++++.+ +++++||++++|. .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999 4456788899988 8999999998885 34556655443 3699999998886654433 5556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchhhhhh--hhHH--HHHHHHHHHcCCCHHHH
Q 004972 459 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVNRA--FFPY--SQSARLLVSLGVDVFRI 515 (721)
Q Consensus 459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi~nRl--~~~~--~~Ea~~l~~~Gv~~~~I 515 (721)
+.++++.++.+.++++.+|..++.++. ....++-.+ +-.+ +.++..+.+.|.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 678889999999999999999999853 233222222 1122 23455555566666554
No 132
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=5.8e-15 Score=156.25 Aligned_cols=95 Identities=23% Similarity=0.295 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCCH
Q 004972 617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR 695 (721)
Q Consensus 617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 695 (721)
++++.||++.++++||+.|+++|++ ++++||.++..|+|||++..|||+++|.+|++.+++.++.+.+.+++ +|.|++
T Consensus 182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 260 (314)
T PRK08269 182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA 260 (314)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 4789999999999999999999998 99999999999999999999999999999999999999999998887 999999
Q ss_pred HHHHHH-------HcCCCCcCCCC
Q 004972 696 FLEERA-------TKGIPLSAPVS 712 (721)
Q Consensus 696 ~l~~~~-------~~g~~f~~~~~ 712 (721)
+|++|+ |+|+|||+|++
T Consensus 261 ~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 261 IVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHCCCCcccCCCcceeCCC
Confidence 999999 78999999954
No 133
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.54 E-value=1.1e-13 Score=146.08 Aligned_cols=186 Identities=15% Similarity=0.118 Sum_probs=124.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
+||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999998765421 12 1223333 56789
Q ss_pred CCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEecCCCCC---CCCCeeEE
Q 004972 385 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 455 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEi 455 (721)
||+||+|+|++..+...+.. .+.+.+++++++++. |+..+. ++.+.+. ..-+|+.......+ ..+.++-+
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~-sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~ 136 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDM-STIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL 136 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence 99999999977655544432 356667788887654 444443 3433332 22233322221111 12222223
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-c---hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-g---fi~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+.+ +++++++++++++.+|+.++++++.. | .++|.++ ...+.|++.+++. |++++.+-.++
T Consensus 137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 78999999999999999999998731 1 3445443 3345799999887 99999987777
No 134
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=3.6e-13 Score=140.44 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=137.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 380 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 380 (721)
|+||+|||+|.||++++..+.++| ++|.+||++++..+...+.+ + +..+++. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 468999999999999999999999 78999999998866542210 1 2223343 4
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeE-EecCC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 459 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvE-iv~~~ 459 (721)
.+.+||+||+|+| .....++++++.+.+ +++|+|.+++++...+...++...+++..||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5688999999998 777888888888776 467778888999988888776667899999998887776666 45777
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--Cchh-hh----hhhhHHHHHHHHHH-HcCCCHHHHHHHH
Q 004972 460 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-VN----RAFFPYSQSARLLV-SLGVDVFRIDSAI 519 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--~gfi-~n----Rl~~~~~~Ea~~l~-~~Gv~~~~ID~a~ 519 (721)
.++++..+.++.+++.+|..+++..+. .... .. -+++.++....... +.|+++++..+++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999999755443221 1111 11 12223333333433 4599998877776
No 135
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=2.2e-13 Score=142.76 Aligned_cols=188 Identities=13% Similarity=0.120 Sum_probs=136.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
.+||+|||+|.||.+|+..|.++| ++|+++|++++ .++.... . . .+..+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~-----------~-----------~-g~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ-----------K-----------Y-GVKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH-----------h-----------c-CceEeCCH
Confidence 468999999999999999999998 78999999764 4343211 0 0 12333444
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-c
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 457 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~ 457 (721)
+.+++||+||.||| ++...+++.++.+.++++++|+|..++++++.+.+......++++.||+.|......+.++ +
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55789999999999 7777788888988888888999988899999888877655679999998776665555555 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch--hh-----hhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972 458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF--AV-----NRAFFPYSQSARL--LVSLGVDVFRIDSAI 519 (721)
Q Consensus 458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf--i~-----nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~ 519 (721)
++..+++..+.++++++.+|+..+ +.+.--. .. ... ..++.|++. ....|+++++.-+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777889999999999999998554 3321100 00 111 233344443 345599999888887
No 136
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=4.8e-13 Score=139.01 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 380 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 380 (721)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999886654210 11 2233344 5
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 459 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~ 459 (721)
.+++||+||.||+ ++...++++++.+.++++++|+|...++++.++.+.++.+.+++...|+.|...+..+..+ +++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 5789999999999 6888899999998888889999999999999999988766789999999999988888876 567
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC------------CCchhhhhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004972 460 RTSAQVILDLMTVGKIIKKVPVVVGN------------CTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 519 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~lG~~~v~v~d------------~~gfi~nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~ 519 (721)
..+++..+.+..+++.+|... ++.| .|+|+ .++.|++ ..++.|++.++-....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~~E~~~d~~talsgsgPAf~------~~~~eal~~a~v~~Gl~~~~A~~l~ 204 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VVNEKLMDVVTSISGSSPAYV------YMFIEAMADAAVLGGMPRKQAYKFA 204 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EEcHHHhhhHHHhccCcHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 788999999999999999974 4433 22222 2233433 2334577777766665
No 137
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.52 E-value=7.4e-14 Score=139.75 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=113.0
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (721)
Q Consensus 14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (721)
+|++|.++.+ + .+..+.-.+.+|.++++.+..|+++++|||+ .||+|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4777777665 2 2433455689999999999999999999998 6999999987532 12334
Q ss_pred HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc------------ccCcccccccc-----------
Q 004972 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGTQRL----------- 147 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~------------~~Gl~P~~~~l----------- 147 (721)
+.+..++||+||+++|.|.|+|+.|+++||++++++++.|+.-.+ ++|+-+...+.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 457789999999999999999999999999999999999874321 22321110000
Q ss_pred --------------------------ccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHH
Q 004972 148 --------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188 (721)
Q Consensus 148 --------------------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 188 (721)
.|.+.+. ..+-+..|..+++++|++.||||++...++...
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 0111111 223345788999999999999999987666544
No 138
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=3.5e-14 Score=151.42 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHH
Q 004972 617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 696 (721)
Q Consensus 617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 696 (721)
++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|..|++.+.+++..+++.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 5789999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-------HcCCCCcCCCCCC
Q 004972 697 LEERA-------TKGIPLSAPVSSS 714 (721)
Q Consensus 697 l~~~~-------~~g~~f~~~~~~~ 714 (721)
|++|+ |+|+|||+|++..
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCCCC
Confidence 99999 8899999996543
No 139
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.51 E-value=5.7e-13 Score=133.65 Aligned_cols=189 Identities=19% Similarity=0.160 Sum_probs=130.4
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
..++||+||+|.||++|+.+|.++||.|++|||+.++.+... +.|. -...+..|.++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga------------~v~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGA------------RVANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhch------------hhhCCHHHHHh
Confidence 468999999999999999999999999999999999876642 3331 11123337789
Q ss_pred CCCEEEEcccCChHHHHHHHHH--HHhhCCCCeEE-EecCCCCCH---HHHhcccCC-CCcEEEecCC---CCCCCCCee
Q 004972 384 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCIL-ATNTSTIDL---NIVGEKTSS-QDRIIGAHFF---SPAHVMPLL 453 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii-~s~ts~~~i---~~l~~~~~~-~~r~ig~h~~---~p~~~~~lv 453 (721)
+||+||.+||....++..++.. +...++++... ++ .|++.+ .++++.... ..+++-..-- .++.. ..+
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~-G~L 168 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEE-GTL 168 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhc-CeE
Confidence 9999999999888888777764 23333344333 33 333332 366665543 2233321110 11122 224
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----chhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GFAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~----gfi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
.+..+ .+++.++++.++++.+||++++++... .-+.|+++.+. +.|++.+.+. |+|+..+-.++
T Consensus 169 timag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil 241 (327)
T KOG0409|consen 169 TIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL 241 (327)
T ss_pred EEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444 589999999999999999999997632 24677776543 3599999988 99999998888
No 140
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.51 E-value=4.1e-14 Score=165.73 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 695 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 695 (721)
++++|.||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 5799999999999999999999997 6999999998 899998 999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCCCcCCCCC
Q 004972 696 FLEERA-------TKGIPLSAPVSS 713 (721)
Q Consensus 696 ~l~~~~-------~~g~~f~~~~~~ 713 (721)
+|++|+ |+|+|||+|.+.
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~~~ 589 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYGQK 589 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECCCC
Confidence 999999 789999999643
No 141
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.50 E-value=1.2e-12 Score=136.87 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=110.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|. +...++.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 7899999998866542 1221 111223333456
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC--CCCcEEEecCCCC------CC------CC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM 450 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~--~~~r~ig~h~~~p------~~------~~ 450 (721)
||+||.|+| .....+++.++.+ ++++++|++.+|+.. .+.+.+. .+.+|++.||+.+ .. .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~k~--~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGSTKA--KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccchH--HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 6667788888888 888988887555322 2222221 2357999999742 21 34
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 45667788888999999999999999999999853
No 142
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=3.6e-14 Score=136.30 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=101.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
|+||+|||+|.||++||.+|+++|++|++||+++++.++..+ . .....+++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998777532 1 24455565 6678
Q ss_pred CCCEEEEcccCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HVM 450 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~--------~~~ 450 (721)
+||+||.|+|.+.+ .++++.+ +.+.+++++++++.+ +..++ ++++.+... |.||.+.| ..+
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence 99999999995444 5566666 888889999888544 44443 444443221 34554333 223
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cC
Q 004972 451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GN 485 (721)
Q Consensus 451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d 485 (721)
.+.-++.| +++++++++++++.++++++++ ++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 34445555 6899999999999999998854 64
No 143
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.50 E-value=5.2e-14 Score=164.42 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 695 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 695 (721)
++++|.||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 5799999999999999999999995 8999999996 999998 999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCCCcCCCCC
Q 004972 696 FLEERA-------TKGIPLSAPVSS 713 (721)
Q Consensus 696 ~l~~~~-------~~g~~f~~~~~~ 713 (721)
+|++|+ |+|+|||+|.+.
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCCCC
Confidence 999999 789999999643
No 144
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.49 E-value=5.8e-13 Score=144.38 Aligned_cols=221 Identities=16% Similarity=0.100 Sum_probs=142.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||+|.||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998876443211 1111111 112333 45789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCC------------CC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV 449 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~------------~~ 449 (721)
||+||+|+| ......+++++.+ .++++++|++.+|.. .+..+........+|++.||+... ..
T Consensus 61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999 5677899999987 478888887655542 234444444556789999986433 12
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 004972 450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRA--FFPYSQSARLLVSLGVDVFRIDSAIRSFGLP- 525 (721)
Q Consensus 450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl--~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p- 525 (721)
+...-+++++.++++.++.++++++.+|+.++++ .+.+..++..+ +-.++.+++ ....+.+..+.-.. .+-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~l-a~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRL-AAGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhh-hcccccC
Confidence 3335578888899999999999999999999988 34455555555 233445544 11223322222222 223332
Q ss_pred ------ccHHHHHHhhch--HHHHHHHHHHHHh
Q 004972 526 ------IGPFQLLDLAGY--GVAAATSKEFDKA 550 (721)
Q Consensus 526 ------~Gpf~~~D~~Gl--d~~~~~~~~l~~~ 550 (721)
.-|-.|.|.+-- +.+...++.+...
T Consensus 217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~ 249 (359)
T PRK06545 217 ITRIASSDPGMWRDILESNAEALLDALDEWIED 249 (359)
T ss_pred CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 267777777642 2233444444333
No 145
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.49 E-value=2.9e-13 Score=142.57 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=126.8
Q ss_pred EEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEE
Q 004972 310 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 388 (721)
Q Consensus 310 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 388 (721)
|||+|.||.+||..|+++|++|++||+++++++... +.| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876642 112 2233444 567899999
Q ss_pred EEcccCChHHHHHHH---HHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCC--------CCeeE
Q 004972 389 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------MPLLE 454 (721)
Q Consensus 389 Ieavpe~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~--------~~lvE 454 (721)
|.|||.+..+ +.++ .++.+.+++++++++.+ ++.+. ++.+.+.. .|.+|.+.|.. +.+.-
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 9999965544 4455 56777778888887544 55554 33333321 14455443322 22333
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCch---hhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 523 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gf---i~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~G 523 (721)
++.| +++.+++++++++.+|+.++++++ ..|. ++|+++.. .+.|++.+.+. |++++++..++ .+.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 3444 678999999999999999999987 3333 55555433 35799999988 99999999998 5554
No 146
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.45 E-value=1.2e-12 Score=137.78 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=122.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 385 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 385 (721)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.| ....++. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 799999999999999999999999999999874 2221 1122 1122233 557899
Q ss_pred CEEEEcccCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEecCCCCC----CCCCeeEE
Q 004972 386 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI 455 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~i~---~l~~~~~-~~~r~ig~h~~~p~----~~~~lvEi 455 (721)
|+||.|||++..+...++.. +...+.+++++++. |+..+. ++++.+. +..+|+. +|.... ..+.+.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence 99999999776665555432 55556778887754 444443 3334332 3334555 333221 12222223
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH
Q 004972 456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+.| +++++++++++++.+|+.++++++. | -++|.++.. .+.|++.+.+. |++++++-.++
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 7999999999999999999999873 4 244555433 35699999877 99999987777
No 147
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.45 E-value=2.4e-12 Score=142.62 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=120.2
Q ss_pred eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
+||+||| +|.||+++|..|.+.|++|++||++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 3799998 7999999999999999999999999876533211 111 2233444 5678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCC----CCCCCCeeEEec
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVR 457 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~----p~~~~~lvEiv~ 457 (721)
+||+||.|+| ......++.++.+.++++++|++.+|+ .+...+.+..+...+|++.||+. |...+..+.+++
T Consensus 58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999 666678899999999999999887774 44455665555556899999764 334556677888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 458 TERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
++.++++.++.+.++++.+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999999874
No 148
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.45 E-value=1.3e-12 Score=144.02 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=128.8
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 375 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 375 (721)
.++||+|||+|+||.++|..|+++|++|++||+++++++..... +...+.+.++ .+++.+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence 36799999999999999999999999999999999998764211 0001111111 234555
Q ss_pred ccCccccCCCCEEEEcccCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCC--CC-cE--E
Q 004972 376 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--QD-RI--I 439 (721)
Q Consensus 376 ~~~~~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~--~~-r~--i 439 (721)
+++ +++||+||.|||.+ ......+.+.+.++++++++|+..|+ .++. ++...+.. +. .+ -
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCccccc
Confidence 554 35899999999964 36667778889999999988865333 3322 22221110 00 00 0
Q ss_pred ---E--ecC-CCCCCCCC--ee-------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhhhh---hh
Q 004972 440 ---G--AHF-FSPAHVMP--LL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRA---FF 496 (721)
Q Consensus 440 ---g--~h~-~~p~~~~~--lv-------Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----gfi~nRl---~~ 496 (721)
+ .++ ++|-...+ .+ -++.| .+++..+.+.++++.++..++++++.. .++.|-+ ..
T Consensus 146 ~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~i 223 (415)
T PRK11064 146 AGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNI 223 (415)
T ss_pred ccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 0 011 23322111 11 24444 378999999999999998887776511 2333433 24
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 497 PYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 497 ~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+++||+..+++. |+|+.++-+++
T Consensus 224 a~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 224 AFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 678999999988 99999998887
No 149
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.45 E-value=1.2e-12 Score=145.12 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=132.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc-
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 382 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 382 (721)
|.+|+|||+|.||++||.+|+++|++|++||+++++++...+... ..|. .+..++++ +.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN 62 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence 358999999999999999999999999999999999877543110 0110 13334454 223
Q ss_pred --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC--------CCe
Q 004972 383 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--------MPL 452 (721)
Q Consensus 383 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~--------~~l 452 (721)
+++|+||.+||. .+...+++.++.+.+.++.||++.+++.+...........+ -|+||...|-. ++
T Consensus 63 ~l~~~d~Iil~v~~-~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~- 138 (470)
T PTZ00142 63 SLKKPRKVILLIKA-GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP- 138 (470)
T ss_pred cCCCCCEEEEEeCC-hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-
Confidence 468999999884 45566777899999999999988777655443322211111 15666543322 22
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-Cc----hhhhhhhhHH---HHHHHHHHH--cCCCHHHHH
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TG----FAVNRAFFPY---SQSARLLVS--LGVDVFRID 516 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-~g----fi~nRl~~~~---~~Ea~~l~~--~Gv~~~~ID 516 (721)
-+++|. ++++++.++++++.++.+ ..++++. .| .+.|-+.++. +.|++.+++ .|++++++-
T Consensus 139 -~lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~ 215 (470)
T PTZ00142 139 -SLMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS 215 (470)
T ss_pred -EEEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 245543 799999999999999987 6778763 22 2335554444 459999986 489999998
Q ss_pred HHHHh
Q 004972 517 SAIRS 521 (721)
Q Consensus 517 ~a~~~ 521 (721)
.++..
T Consensus 216 ~v~~~ 220 (470)
T PTZ00142 216 EVFNK 220 (470)
T ss_pred HHHHH
Confidence 88743
No 150
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.45 E-value=1.7e-12 Score=134.10 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=118.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC--cc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 380 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 380 (721)
.++|+|+|+|.||+++|..+.+.|+.|.+++++... .+.+ ...|..+ ..+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence 468999999999999999999999988666665543 3332 1222211 01122 35
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC------CCCe
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPL 452 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~~------~~~l 452 (721)
.+.+||+||.||| .....++++++.+.++++++|++.+|+. ++..+....+...+|+|.||...++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 9999999999999999999999877763 3445555443323899999976662 2344
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
+-+++++.++.+.++.++.+++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 66778888899999999999999999999884
No 151
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.44 E-value=1.1e-12 Score=145.52 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=127.7
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c--
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-- 380 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-- 380 (721)
.+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+... ..|. ..+....++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence 3568999999999999999999999999999999999876532100 0020 011223333 2
Q ss_pred -ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCC---CCCCCee
Q 004972 381 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP---AHVMPLL 453 (721)
Q Consensus 381 -~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p---~~~~~lv 453 (721)
.++.+|+||.|||.+..+ ++++..+.+.+.++.|+++.++..+.+ .+.+.+. ..-+|+++-.... +..++
T Consensus 68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-- 144 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-- 144 (493)
T ss_pred hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC--
Confidence 334599999999966655 455578888888888888655543322 3333332 2223333332211 12333
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCc------hhhhhhhhHH---HHHHHHHHHc--CCCHHHHH
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG------FAVNRAFFPY---SQSARLLVSL--GVDVFRID 516 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~~g------fi~nRl~~~~---~~Ea~~l~~~--Gv~~~~ID 516 (721)
.+++|. +++++++++++++.++.+ ++++++ +| .+.|-+.+.. +.|++.+++. |++++++-
T Consensus 145 ~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~ 221 (493)
T PLN02350 145 SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELA 221 (493)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence 345543 899999999999999964 788887 34 2334444443 4599999875 89999999
Q ss_pred HHH
Q 004972 517 SAI 519 (721)
Q Consensus 517 ~a~ 519 (721)
.++
T Consensus 222 ~vf 224 (493)
T PLN02350 222 EVF 224 (493)
T ss_pred HHH
Confidence 885
No 152
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.44 E-value=1.6e-12 Score=143.85 Aligned_cols=201 Identities=19% Similarity=0.178 Sum_probs=131.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHH--hhcCceeccCc-cccC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK 383 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l~ 383 (721)
||+|||+|.||.++|..|+++|++|++||+++++++........ ..+.+ + .+.... ..++++.++++ +.++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~----~~e~~-l-~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP----IYEPG-L-DELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCC----CCCCC-H-HHHHHHhhhcCCeEEECCHHHHHh
Confidence 79999999999999999999999999999999988764321000 00000 0 000000 12446777777 4589
Q ss_pred CCCEEEEcccCCh--------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhc-ccCC-------CCcEEEecCC
Q 004972 384 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF 444 (721)
Q Consensus 384 ~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~-~~~~-------~~r~ig~h~~ 444 (721)
+||+||.|||.+. .....+.+++.+.++++++++. +|++++. ++.. .... ..-.+..+|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P- 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP- 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence 9999999999764 3466777888888888887764 3444332 3321 1111 111233343
Q ss_pred CCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----chhhhhh---hhHHHHHHHHHH
Q 004972 445 SPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV 506 (721)
Q Consensus 445 ~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-----gfi~nRl---~~~~~~Ea~~l~ 506 (721)
....+.- .++.| .+++..+.++++++.++ +.++++++.. .++.|-+ ..+++||+..++
T Consensus 154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 24555 48999999999999998 5777776522 2333433 256789999999
Q ss_pred Hc-CCCHHHHHHHH
Q 004972 507 SL-GVDVFRIDSAI 519 (721)
Q Consensus 507 ~~-Gv~~~~ID~a~ 519 (721)
+. |+++.++-.++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 88 99999998888
No 153
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.42 E-value=5.1e-13 Score=156.52 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=92.5
Q ss_pred HHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHH
Q 004972 469 LMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAA 542 (721)
Q Consensus 469 ~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~G~p~---Gpf~~~D~~Gld~~~~ 542 (721)
+..++..+++.++.+.+.+|||+||++.+++||+++++++|+ +|+|||.++ .++|||+ |||+++|.+|+|.+++
T Consensus 627 v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~ 706 (737)
T TIGR02441 627 ADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVD 706 (737)
T ss_pred HHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHH
Confidence 555667788888766789999999999999999999999998 999999999 8999996 9999999999999999
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHc-CC
Q 004972 543 TSKEFDKAFPDRSFQSPLVDLLLKS-GR 569 (721)
Q Consensus 543 ~~~~l~~~~~~~~~~~~~l~~~v~~-G~ 569 (721)
.++.+++.+++++.|+++|++|+++ |+
T Consensus 707 ~~~~l~~~~g~~~~p~~lL~~~~~~~g~ 734 (737)
T TIGR02441 707 KMEKYAAAYGVQFTPCQLLLDHAKSPGK 734 (737)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence 9999999999887799999999987 64
No 154
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.41 E-value=4.2e-13 Score=157.27 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=85.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCC--CC
Q 004972 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK 692 (721)
Q Consensus 615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~ 692 (721)
-++++|.||++++++|||+.++++| + +++|||.++..++|||. |||+++|.+|+|.++++++.+...++++ +.
T Consensus 493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 567 (715)
T PRK11730 493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD 567 (715)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence 4689999999999999999999999 6 89999999999999998 9999999999999999999999888775 34
Q ss_pred CCHHHHHHH-------HcCCCCcCCCC
Q 004972 693 PSRFLEERA-------TKGIPLSAPVS 712 (721)
Q Consensus 693 p~~~l~~~~-------~~g~~f~~~~~ 712 (721)
|+++|++|+ |+|+|||+|.+
T Consensus 568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 568 YRDAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred hhHHHHHHHHCCCCccccCCEeEeccc
Confidence 678999999 78999999953
No 155
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.41 E-value=4e-12 Score=135.23 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=115.3
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 380 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 380 (721)
.++||+|||+|.||.++|..|.+.|+ +|++||++++..+.+. +.|.. ....++. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence 45799999999999999999999995 8999999998766542 11211 1112233 4
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC---------
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 449 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~~~--------- 449 (721)
.+++||+||+|+| ......++.++.+.++++++|++.+|.. .+..+........+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 5789999999999 5566788888888888888887654432 12333344444458999999875432
Q ss_pred ---CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 450 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 450 ---~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345677777889999999999999999998874
No 156
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=6.6e-12 Score=131.39 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH----HHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 380 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 380 (721)
|||+|||+|++|...+.+|+..||+|+++|+++++++...+. .+..++.+++++..+ +|+++|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 589999999999999999999999999999999999987654 233444455444322 579999999 5
Q ss_pred ccCCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC--CCCc-E-EEe----
Q 004972 381 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGA---- 441 (721)
Q Consensus 381 ~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~--~~~r-~-ig~---- 441 (721)
+++++|++++|||. |......+.+++.++++..++++ +-||+|+. .+..... .+.+ | +..
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 68999999999975 56678888899999998866665 45666653 2222111 1111 0 111
Q ss_pred --------cCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC-----chhhhhhh---hHHHHHHH
Q 004972 442 --------HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT-----GFAVNRAF---FPYSQSAR 503 (721)
Q Consensus 442 --------h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~~-----gfi~nRl~---~~~~~Ea~ 503 (721)
.|++|.++ |+... ++++.+.+.++++.+ ...|+++.+.. .+..|-++ .+++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13556554 45443 334566666777654 45566654322 34445444 26899999
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004972 504 LLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 504 ~l~~~-Gv~~~~ID~a~ 519 (721)
.+++. |++..+|-.++
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 99988 99999988876
No 157
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.41 E-value=7.5e-12 Score=132.37 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=124.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----ccc
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 382 (721)
||+|||+|.||.+||..|+++|++|++||+++++++...+ .+. ...++. +.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~-------------~~~~s~~~~~~~~ 57 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRT-------------TGVANLRELSQRL 57 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-------------cccCCHHHHHhhc
Confidence 7999999999999999999999999999999998776432 121 011111 345
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCCCCC-CeeEEecC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAHVM-PLLEIVRT 458 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~~~~-~lvEiv~~ 458 (721)
.++|+||.|||.+ ..++++.++.+.++++.+|++.+++.+.+ ++.+.+. ...+|+..+....+... ...-++.+
T Consensus 58 ~~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~g 135 (298)
T TIGR00872 58 SAPRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIG 135 (298)
T ss_pred CCCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeC
Confidence 6799999999954 67788899999998888888766654333 3333332 22344444433221100 01223333
Q ss_pred CCCCHHHHHHHHHHHHHcCC---eeEEEcCCC-c----hhhhhhhhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004972 459 ERTSAQVILDLMTVGKIIKK---VPVVVGNCT-G----FAVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI 519 (721)
Q Consensus 459 ~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~~-G--v~~~~ID~a~ 519 (721)
.+++.++.++++++.++. ..+++++.. | .+.|-+.... +.|++.+++. | ++++++-.++
T Consensus 136 --G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 136 --GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred --CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 279999999999999996 467887632 1 2334444433 3599999987 4 5999999988
No 158
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=2.6e-12 Score=135.97 Aligned_cols=182 Identities=17% Similarity=0.118 Sum_probs=121.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC--
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 383 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 383 (721)
||+|||+|.||.+||..|++.|++|++||+++++.+... +.| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 799999999999999999999999999999998766532 111 2223333 2233
Q ss_pred -CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCCCCCCe------eE
Q 004972 384 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVMPL------LE 454 (721)
Q Consensus 384 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~p~~~~~l------vE 454 (721)
++|+||.|+|.+. ..+.++.++.+.++++.++++.+++.+. .++.+.+... |.+|.+.|-.+.. .-
T Consensus 58 ~~advVi~~vp~~~-~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGE-VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCch-HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence 3799999999554 4456667787778888888765443332 2444433211 3455442222111 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCc-----hhhhhh-hhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FFPY---SQSARLLVSL-G--VDVFRIDSAI 519 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~g-----fi~nRl-~~~~---~~Ea~~l~~~-G--v~~~~ID~a~ 519 (721)
++.+ .+++++++++++++.+|. ..+++++ +| -++|++ .... +.|++.+.++ | ++++++-.++
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 3322 278999999999999997 7888887 34 233443 3332 4599999987 7 8999988887
Q ss_pred H
Q 004972 520 R 520 (721)
Q Consensus 520 ~ 520 (721)
.
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 3
No 159
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=3.3e-12 Score=135.37 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=122.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC--
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 383 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 383 (721)
||+|||+|.||.+||..|+++|++|++||+++++.+... +.| ....++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876542 112 2223333 2233
Q ss_pred -CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCCC------eeE
Q 004972 384 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMP------LLE 454 (721)
Q Consensus 384 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~~------lvE 454 (721)
++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+.+ ++.+.+... |.+|.+.|-.+. ...
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 47999999995534 4556677888888888887655544422 333333211 445543332211 112
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCc-----hhhhh-hhhHH---HHHHHHHHH---cCCCHHHHHHH
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTG-----FAVNR-AFFPY---SQSARLLVS---LGVDVFRIDSA 518 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~~g-----fi~nR-l~~~~---~~Ea~~l~~---~Gv~~~~ID~a 518 (721)
++.+ .++++++.++++++.+++ .++++++. | -++|+ +.... +.|++.+.+ .|++++++-.+
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPV-GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 379999999999999999 78899873 4 13333 43333 459999987 47899999999
Q ss_pred HH
Q 004972 519 IR 520 (721)
Q Consensus 519 ~~ 520 (721)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 84
No 160
>PLN02256 arogenate dehydrogenase
Probab=99.39 E-value=5.3e-12 Score=132.94 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=112.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc-
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 382 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 382 (721)
.+||+|||+|.||+++|..+.+.|++|++||+++.. +.+. +.| +...++. +.+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 468999999999999999999999999999998632 2110 111 1223333 233
Q ss_pred CCCCEEEEcccCChHHHHHHHHHH-HhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCe------e
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------L 453 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l------v 453 (721)
.++|+||+|+| .....+++.++ ...++++++|++.+|+ .++..+...++...+|++.||+.++..... +
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 66778888888 5678899999888874 556666666655557999999887764311 1
Q ss_pred EEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 454 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 454 Eiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
-+.+. +.++++.++.++++++.+|.+++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11221 56788999999999999999999983
No 161
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=8e-12 Score=130.05 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=137.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH---HHHhhcCceeccCcccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~l 382 (721)
.+|+|||+|.+|.++|..++++|++|+.+|+++.+++........ .. ..+.++ .....++++.|++.+.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~-----i~--e~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESY-----IE--EPDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcce-----ee--cCcHHHHHHHHHhcCCceEecChhhc
Confidence 689999999999999999999999999999999998875421000 00 001111 11223578899999999
Q ss_pred CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcc-------cCCCCcEEEecCCC
Q 004972 383 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEK-------TSSQDRIIGAHFFS 445 (721)
Q Consensus 383 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~-------~~~~~r~ig~h~~~ 445 (721)
+.||++|+|||. |+....+..+.|.++++++.+++.-+++.|- +++..- +..+..|.-. +.
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~la--ys 160 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLA--YS 160 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEe--eC
Confidence 999999999985 6667788888999999999988754443332 232221 2222222222 24
Q ss_pred CCCCCCe---eE------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhh---hhhhHHHHHHHHHHHc
Q 004972 446 PAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN---RAFFPYSQSARLLVSL 508 (721)
Q Consensus 446 p~~~~~l---vE------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----gfi~n---Rl~~~~~~Ea~~l~~~ 508 (721)
|-+.+|. .| |+.| .+++..+.+..|++.+-+..+.+.+.. ...-| -+-.++.||-..++++
T Consensus 161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4444433 23 3444 489999999999999877766665422 11112 2357889998888877
Q ss_pred -CCCHHHHHHHH
Q 004972 509 -GVDVFRIDSAI 519 (721)
Q Consensus 509 -Gv~~~~ID~a~ 519 (721)
|++..++-.+.
T Consensus 239 ~GIdvwevIeaA 250 (436)
T COG0677 239 MGIDVWEVIEAA 250 (436)
T ss_pred hCCcHHHHHHHh
Confidence 99887776666
No 162
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.39 E-value=6.7e-13 Score=155.18 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=84.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCC--C
Q 004972 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K 692 (721)
Q Consensus 615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~ 692 (721)
-++++|.||++.++++||++++++| + ++++||.++..++|||+ |||+++|.+|+|..+++++.+.+.+++++ .
T Consensus 493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~ 567 (714)
T TIGR02437 493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD 567 (714)
T ss_pred CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence 4689999999999999999999999 6 89999999999999998 99999999999999999999998888754 4
Q ss_pred CCHHHHHHH-------HcCCCCcCCC
Q 004972 693 PSRFLEERA-------TKGIPLSAPV 711 (721)
Q Consensus 693 p~~~l~~~~-------~~g~~f~~~~ 711 (721)
|++++++|+ |+|+|||+|+
T Consensus 568 ~~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 568 GRDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hhHHHHHHHHCCCCcccCCCEEEecc
Confidence 578999999 7899999994
No 163
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.39 E-value=1.2e-12 Score=125.52 Aligned_cols=132 Identities=25% Similarity=0.285 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (721)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G 107 (721)
++..+.++|.+.++.++.|+.+++|+|.. .|.|+|+... ..+. +.+..++||+|+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 55678999999999999999999999976 4677765432 2333 5577889999999999
Q ss_pred cccccchHhhhhcCEEEeeCCceEeCcccccCccccc----------------ccc------ccccCHHHHHHHHHcCCC
Q 004972 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGT----------------QRL------PRLVGLSKAIEMMLLSKS 165 (721)
Q Consensus 108 ~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~----------------~~l------~r~~G~~~a~~l~ltg~~ 165 (721)
.|.++|+.|+++||.|++.+++.|++.....+..... ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999987765543210 111 223344557788889999
Q ss_pred cCHHHHHHcCCccEE
Q 004972 166 ITSEEGWKLGLIDAV 180 (721)
Q Consensus 166 ~~a~eA~~~Glv~~v 180 (721)
++|+||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 164
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.38 E-value=4.7e-12 Score=137.85 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=120.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 385 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 385 (721)
||+|||+|.||.++|..++. ||+|++||+++++++.+.+......+..+++ .......+++.+++. +.+++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence 79999999999999988885 9999999999999988754321111111110 000112345556655 557999
Q ss_pred CEEEEcccCCh---------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCCCee
Q 004972 386 DMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL 453 (721)
Q Consensus 386 DlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~~~lv 453 (721)
|+||+|||++. ....++++++.+ ++++.+++. .||+++. ++...+. +. ++.| +|....+.-
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~ 147 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK 147 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence 99999999864 344566677877 577777754 3444433 3332221 11 2222 343322221
Q ss_pred ---------EEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----Cchhhhhh---hhHHHHHHHHHHHc-CCCH
Q 004972 454 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRA---FFPYSQSARLLVSL-GVDV 512 (721)
Q Consensus 454 ---------Eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d~-----~gfi~nRl---~~~~~~Ea~~l~~~-Gv~~ 512 (721)
-++.|. +++..+.+.+++.. ++..+. ++++. ..++.|-+ ..+++||+..+++. |+|+
T Consensus 148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~ 225 (388)
T PRK15057 148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT 225 (388)
T ss_pred ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 133332 34556777777754 554333 45432 22344443 25678999999988 9999
Q ss_pred HHHHHHH
Q 004972 513 FRIDSAI 519 (721)
Q Consensus 513 ~~ID~a~ 519 (721)
.++-.++
T Consensus 226 ~eV~~a~ 232 (388)
T PRK15057 226 RQIIEGV 232 (388)
T ss_pred HHHHHHh
Confidence 9999988
No 165
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.37 E-value=2.8e-11 Score=129.25 Aligned_cols=205 Identities=16% Similarity=0.062 Sum_probs=135.2
Q ss_pred CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccC
Q 004972 316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 394 (721)
Q Consensus 316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe 394 (721)
=|.+||..|+++|++|++||++++.++... .+...+.| ++.+++. +.+++||+||+|+|.
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~ 91 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPF 91 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCC
Confidence 489999999999999999999998654311 01111222 4444454 667899999999995
Q ss_pred ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH----HhcccCCCCcEEEecCCCCCCC----CCeeEEecCC------C
Q 004972 395 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI----VGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------R 460 (721)
Q Consensus 395 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~----l~~~~~~~~r~ig~h~~~p~~~----~~lvEiv~~~------~ 460 (721)
.. ..++++..+.+.++++++|++ +|+.+... +...+..+.+.+|.||++|... ...++++.+. .
T Consensus 92 ~~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 92 GK-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL 169 (342)
T ss_pred cH-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence 44 467788889999999988875 44444443 3344444445677877766543 2235566544 2
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCchh---hhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHH
Q 004972 461 TSAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQL 531 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi---~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G~p~Gpf~~ 531 (721)
.+++.+++++++++.+|++++++++..|-. .|.++.+. ..|++.+.+. |.+|.+.-.-+ ... -.|--.+
T Consensus 170 ~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l 247 (342)
T PRK12557 170 ATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASL 247 (342)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHH
Confidence 389999999999999999998887533322 34444443 3488888877 77776654443 221 0356666
Q ss_pred HHhhchHHHHHH
Q 004972 532 LDLAGYGVAAAT 543 (721)
Q Consensus 532 ~D~~Gld~~~~~ 543 (721)
+-..|+|...+.
T Consensus 248 ~~~~~~~~~~~~ 259 (342)
T PRK12557 248 VETSGVDGLLKA 259 (342)
T ss_pred HHHhChHHHHHh
Confidence 667777765553
No 166
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.37 E-value=2e-11 Score=127.60 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=122.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
|+||+|||+|.||.+++..|.++| ++|++|+++++. .+... .. ...+..+++.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987542 22211 00 0112233444
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEec-
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR- 457 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~- 457 (721)
+.+.++|+||+|+| ++...+++.++.++++++++|+|...++++.++.+.++. .+++.+.|+.|...+..+..+.
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 45789999999999 777889999998888888888899999999999987753 4899999999998888888774
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004972 458 TERTSAQVILDLMTVGKIIKKVPVV 482 (721)
Q Consensus 458 ~~~t~~e~~~~~~~l~~~lG~~~v~ 482 (721)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677899999999999999988754
No 167
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.36 E-value=3.4e-12 Score=145.63 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=126.4
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHH
Q 004972 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE 88 (721)
Q Consensus 12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (721)
+++|++|+++.+ + .|..+....+.+.+.++.+..|++|++|||+-. |.|++.... ....+
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as-------------e~i~~ 369 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS-------------EIIRR 369 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH-------------HHHHH
Confidence 578999999877 2 344444456788889999999999999999853 222221110 01112
Q ss_pred HHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceE------eCcc------cccCcccc---cccccc----
Q 004972 89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPG---TQRLPR---- 149 (721)
Q Consensus 89 ~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~------~~pe------~~~Gl~P~---~~~l~r---- 149 (721)
.+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|. +..+.+
T Consensus 370 ~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 370 EL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 33 3366778999999999999999999999999999999987 5553 57898886 444443
Q ss_pred ------------------------ccCHHH-----HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972 150 ------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 200 (721)
Q Consensus 150 ------------------------~~G~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~ 200 (721)
.++..+ +.+.+.+|+.+++++|+++||||++. .+ ++|.+.|.+++..
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 566666 78899999999999999999999994 33 7778888888887
No 168
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.36 E-value=3.1e-11 Score=122.88 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=142.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 379 (721)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...++ ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence 368999999999999999999999 5899999999987643211 11222 3343
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEec-C
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T 458 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~-~ 458 (721)
+.+.++|+||+||. ++...+++.++.+ ..++.+|+|...+++++.+...++ ..+++...|+.|..++..+..+. +
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 66788999999997 8888899999988 778899999999999999999998 77999999999999998888775 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE-----------cCCCchhhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972 459 ERTSAQVILDLMTVGKIIKKVPVVV-----------GNCTGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 519 (721)
Q Consensus 459 ~~t~~e~~~~~~~l~~~lG~~~v~v-----------~d~~gfi~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~ 519 (721)
...+++..+.+..+++.+|+...+- +..|.|+ .++.|++. -+..|++.++.-+..
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv------~~~iEal~~agv~~Gl~~~~A~~l~ 201 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYV------FLFIEALADAGVRLGLPREEARELA 201 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7789999999999999999887663 2244332 23445443 334577766655554
No 169
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.34 E-value=5.8e-12 Score=126.45 Aligned_cols=152 Identities=26% Similarity=0.295 Sum_probs=106.1
Q ss_pred cEEEEEeCC-----CC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHH
Q 004972 14 GVAIITLIN-----PP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (721)
Q Consensus 14 ~v~~i~l~~-----p~-~Na-l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (721)
+|++|.++. +. .|+ ++..++.+|.++++.+++|+++++|||+. +|.|+++....
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~--------------- 61 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF--------------- 61 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH---------------
Confidence 355565543 32 354 45789999999999999999999999975 46666654321
Q ss_pred HHHHHHHHhhC--CCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc---------
Q 004972 87 VELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG--------- 143 (721)
Q Consensus 87 ~~~~~~~l~~~--~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~--------- 143 (721)
.+. +.+..+ +|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.
T Consensus 62 -~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~ 139 (214)
T cd07022 62 -ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKV 139 (214)
T ss_pred -HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCcc
Confidence 111 233344 5999999999999999999999999999999998654322 343221
Q ss_pred --cc---------------------------ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHH
Q 004972 144 --TQ---------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188 (721)
Q Consensus 144 --~~---------------------------~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 188 (721)
.. .-.|-+......+++ |..+++++|++.||||++...+++..
T Consensus 140 ~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 140 DGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 00 001222333344444 99999999999999999987666543
No 170
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.32 E-value=1.4e-11 Score=135.80 Aligned_cols=204 Identities=16% Similarity=0.140 Sum_probs=127.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||+|||+|.||.++|..|+. |++|++||+++++++...+..... .+. ...+... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 589999999999999999887 699999999999988754211000 000 0111111 2467788888778999
Q ss_pred CEEEEcccCCh--------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHh-cccCC------CCcEEEecCCCCC
Q 004972 386 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA 447 (721)
Q Consensus 386 DlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~-~~~~~------~~r~ig~h~~~p~ 447 (721)
|+||.|||.+. .......+.|.++++++.+++.. ||+++. ++. ..+.. -..|.-. ++|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCC
Confidence 99999999652 33344456788889888877643 333332 121 11111 0111111 2222
Q ss_pred CCCCe---------eEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-c---hhhhhhh----hHHHHHHHHHHHc-
Q 004972 448 HVMPL---------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL- 508 (721)
Q Consensus 448 ~~~~l---------vEiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-g---fi~nRl~----~~~~~Ea~~l~~~- 508 (721)
...+. --++.|. +++..+.+.++++.+. ..++++.+.. + .++|..+ .+++||+..+++.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 1145553 5788899999999986 3456655411 1 2334432 5678999999988
Q ss_pred CCCHHHHHHHH-HhcC
Q 004972 509 GVDVFRIDSAI-RSFG 523 (721)
Q Consensus 509 Gv~~~~ID~a~-~~~G 523 (721)
|+|+.++-.++ ....
T Consensus 233 GiD~~~v~~a~~~~~~ 248 (425)
T PRK15182 233 NIDTEAVLRAAGSKWN 248 (425)
T ss_pred CcCHHHHHHHhcCCCC
Confidence 99999998887 4433
No 171
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.32 E-value=1.4e-11 Score=136.75 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=125.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----ccc
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 382 (721)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+...++. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987765321 00010 01222222 234
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH--hcccC-CCCcEEEecCCCCC---CCCCeeEEe
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 456 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l--~~~~~-~~~r~ig~h~~~p~---~~~~lvEiv 456 (721)
+.+|+||.|||.+. ...+++.++.++++++.||++.+++.+.... .+.+. ...+|+++.....+ ..++ -++
T Consensus 62 ~~~dvIil~v~~~~-~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGA-PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM 138 (467)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence 67999999999544 4456778899999999999877665544322 22221 22234433332211 1122 233
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCee------EEEcCCC-c----hhhhhhhhHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 004972 457 RTERTSAQVILDLMTVGKIIKKVP------VVVGNCT-G----FAVNRAFFPY---SQSARLLVS--LGVDVFRIDSAIR 520 (721)
Q Consensus 457 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~--~Gv~~~~ID~a~~ 520 (721)
.| .++++++.++++++.++..+ .++++.. | .+-|-+.+++ +.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33 48999999999999999874 6777632 2 2335555444 359999874 4899999988884
No 172
>PRK07680 late competence protein ComER; Validated
Probab=99.31 E-value=7e-11 Score=123.53 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=126.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
||+|||+|.||.+++..|.++|+ +|++||++++..+...+. ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 79999999999999999999984 799999999876543210 0113334444 45
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEE-ecCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTER 460 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEi-v~~~~ 460 (721)
+.+||+||.|+| .....++++++.++++++++|++.++++++..+...+. .+++..+|..|......+.+ +.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999998 77778889999888888888888888888888887764 35666676544322233333 45666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCC------------CchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHH
Q 004972 461 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI 519 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~v~v~d~------------~gfi~nRl~~~~~~Ea~~l~~-~Gv~~~~ID~a~ 519 (721)
.+++..+.+.+++..+|. ++.+.+. |.|+.| ++.++...+ ++ .|+++++..+++
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~ 202 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA 202 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence 788889999999999995 4555432 112222 222233322 34 588888876665
No 173
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.31 E-value=5.4e-11 Score=127.80 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=123.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
|+||+|||+|.||+.+|..|+++|++|++||++++.++......... ....+ . .....+..+++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~-~------~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP---RYLPG-I------KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc---ccCCC-C------cCCCCeEEeCCHHHHHh
Confidence 46899999999999999999999999999999998877653210000 00000 0 001134445555 4678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-------HHhcccCCCCcEEEecCCCCCC-------C
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------V 449 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-------~l~~~~~~~~r~ig~h~~~p~~-------~ 449 (721)
+||+||.|+| ......++.++.+.+++++++++.++++... .+.+........ .....|.. .
T Consensus 71 ~~D~vi~~v~--~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVP--SQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCC--HHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 9999999999 4677888899999888899888776555542 222222210011 11112221 1
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch----------------------hhhhh---hhHHHHHHHH
Q 004972 450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNRA---FFPYSQSARL 504 (721)
Q Consensus 450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf----------------------i~nRl---~~~~~~Ea~~ 504 (721)
..++. +.+ .+.+.++.+.++++..|..+.+..+..|. ..|.+ ....++|++.
T Consensus 147 ~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~ 223 (325)
T PRK00094 147 PTAVV-IAS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR 223 (325)
T ss_pred CcEEE-EEe--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 11222 222 37889999999999999887776664431 11222 2333568888
Q ss_pred HHHc-CCCHHHHHHH
Q 004972 505 LVSL-GVDVFRIDSA 518 (721)
Q Consensus 505 l~~~-Gv~~~~ID~a 518 (721)
+++. |++++.+...
T Consensus 224 la~~~G~d~~~~~~~ 238 (325)
T PRK00094 224 LGVALGANPETFLGL 238 (325)
T ss_pred HHHHhCCChhhhhcc
Confidence 7766 8877777554
No 174
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.31 E-value=2.1e-11 Score=130.73 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=104.6
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
.+|+|||. |.||+++|..|.+. |++|+.+|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999864 8999999985211 1122 457
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhh---CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCCC-----Ce
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PL 452 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~~-----~l 452 (721)
++||+||.|+| +....++++++.++ ++++++|++.+|+.. +..+ .....+|+|.||+..+... ..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 88899999999886 689999998777653 2333 2333479999998776533 33
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
+-+++. ..++.++.+..+++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 334544 345567899999999999999884
No 175
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.31 E-value=9.2e-12 Score=124.62 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=109.6
Q ss_pred EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH
Q 004972 15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (721)
Q Consensus 15 v~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (721)
|++|.++.+ + ...++.+|.++++.+++|+++++|||++ +|.|+|+.... ...+.+
T Consensus 2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i- 59 (208)
T cd07023 2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI- 59 (208)
T ss_pred EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence 567777654 3 3678999999999999999999999998 48899886521 122344
Q ss_pred HHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccccc--------------
Q 004972 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGTQ-------------- 145 (721)
Q Consensus 92 ~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~~~-------------- 145 (721)
+.+..++||+||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+...
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 4577889999999999999999999999999999999998754222 34433100
Q ss_pred -------c-----------------cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHH
Q 004972 146 -------R-----------------LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187 (721)
Q Consensus 146 -------~-----------------l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 187 (721)
. -.|-+.... .+-+..|..+++++|++.||||++...++..
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 0 011111122 2335678899999999999999998655543
No 176
>PLN02858 fructose-bisphosphate aldolase
Probab=99.31 E-value=2.3e-11 Score=150.59 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
+|||+||+|.||.+||.+|+++|++|++||+++++.+... +.| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence 5799999999999999999999999999999999877642 222 1223444 66788
Q ss_pred CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEE--ecCCCCC--------CC
Q 004972 385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPA--------HV 449 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig--~h~~~p~--------~~ 449 (721)
||+||.|+|++..+...++ ..+.+.+.++.+++.. ||+.+. ++++.+... | .+|.+.| ..
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHhc
Confidence 9999999998777665554 3566777788888754 444444 344333221 3 4454333 22
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCC-c---hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH
Q 004972 450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCT-G---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~-g---fi~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+.+.-++.| +++++++++++++.+|+.++++ ++.. | -++|.++.. .+.||+.+.+. |++++.+-.++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 334444445 7899999999999999998875 6521 2 345555433 34699999887 99999999988
Q ss_pred -HhcC
Q 004972 520 -RSFG 523 (721)
Q Consensus 520 -~~~G 523 (721)
.+.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 5555
No 177
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.29 E-value=8.3e-11 Score=123.80 Aligned_cols=185 Identities=14% Similarity=0.054 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
++|+|||.|.||.++|..|...|++|++++++.+...... .+.| +...+..+.+++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 6899999999999999999999999999888754422210 0111 2223222668899
Q ss_pred CEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC-------CCCeeEEe-
Q 004972 386 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV- 456 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~-------~~~lvEiv- 456 (721)
|+|+.+||.. ....++ +++.+.++++++| +.++++.+.......+...+++-++|..|.+ .+..+...
T Consensus 75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999943 336777 7799999999888 7788898887766655556799999999988 55554433
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcCCC--chhhhh-----hhhHHHHHHHHHHHc-CCCHHHHH
Q 004972 457 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGNCT--GFAVNR-----AFFPYSQSARLLVSL-GVDVFRID 516 (721)
Q Consensus 457 -~~~~t~~e~~~~~~~l~~~lG~~~v-----~v~d~~--gfi~nR-----l~~~~~~Ea~~l~~~-Gv~~~~ID 516 (721)
.+...+.+..+.+..+++.+|..+. ..++.. -....+ -+..++..++..+.+ |++|+.--
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3555678999999999999998875 333221 111111 123345566655544 88777643
No 178
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.27 E-value=1.6e-10 Score=128.55 Aligned_cols=202 Identities=16% Similarity=0.196 Sum_probs=130.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHH-HH-hhcCceeccCc-
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NN-ALKMLKGVLDY- 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~-~~~~i~~~~~~- 379 (721)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.... ..+.+ -++. .. .-.++.+++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----~~e~g---l~ell~~~~~~~l~~t~~~~ 73 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----IYEPG---LDEVVKQCRGKNLFFSTDVE 73 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----cCCCC---HHHHHHHhhcCCEEEEcCHH
Confidence 468999999999999999999985 7899999999998886432100 00111 1111 11 11358889987
Q ss_pred cccCCCCEEEEcccCC-------------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC----------
Q 004972 380 SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS---------- 433 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~---------- 433 (721)
+++++||++|.|||.. +.....+.++|.++++++++|+. .|+.++. .+...+.
T Consensus 74 ~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 74 KHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred HHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 4689999999999633 34777888999999998887763 3333332 2222111
Q ss_pred --CCCcEEEec----CCCCCCCCCeeEEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEcC-----CCchhhhhh---hh
Q 004972 434 --SQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVNRA---FF 496 (721)
Q Consensus 434 --~~~r~ig~h----~~~p~~~~~lvEiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~d-----~~gfi~nRl---~~ 496 (721)
.|+++.-.. |.+|+.+ |+.+.. ..+++.+.+..++..+-+ .++.+.+ ...++.|-. -.
T Consensus 153 ~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I 227 (473)
T PLN02353 153 LSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI 227 (473)
T ss_pred EECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence 122211111 1233332 345432 226688999999998753 4555432 334455544 35
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 497 PYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 497 ~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+++||...+++. |+|+.+|-.++
T Consensus 228 af~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 228 SSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 889999999988 99999999988
No 179
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.27 E-value=1.3e-10 Score=120.52 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=126.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCc---eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
||+|||+|.||.+|+..|.+.|+. +.+||+++++.+...+. ......+++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 799999999999999999999864 58999998876553211 0112333444 456
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 462 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~ 462 (721)
++||+||+|+| ++...+++.++. ..+++++++...+.++..+...+....+++..||..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 666678877762 45777888888899999999888766678889998777655555555432
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CC------chhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 463 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 463 ~e~~~~~~~l~~~lG~~~v~v~d--~~------gfi~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
.+.++++++.+|..+++..+ .. ++..| ++.++.++....++ |+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988774322 11 12222 12345566655554 99998877776
No 180
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.27 E-value=1.2e-11 Score=118.53 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccc
Q 004972 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (721)
Q Consensus 31 ~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~ 110 (721)
...+.+.+.++.+..++.+ .+.|.+.|+...+ ...++ +.|..+++|||++++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 4667888888888876333 3444554432211 12444 6678899999999999999
Q ss_pred ccchHhhhhcCEEEeeCCceEeCcccccCcccc---c---------------cccccccC--HHHHHHHHHcCCCcCHHH
Q 004972 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---T---------------QRLPRLVG--LSKAIEMMLLSKSITSEE 170 (721)
Q Consensus 111 GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~---------------~~l~r~~G--~~~a~~l~ltg~~~~a~e 170 (721)
|+|+.++++||+|+++++++|+++....+..+. . ..+.+..| .....+++.++..++|+|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 999999999999999999999998776665442 1 12667778 677888888888999999
Q ss_pred HHHcCCccEE
Q 004972 171 GWKLGLIDAV 180 (721)
Q Consensus 171 A~~~Glv~~v 180 (721)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999975
No 181
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.26 E-value=8.7e-13 Score=145.64 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=120.0
Q ss_pred eEEEEcCCCCcHHHHH--HH----HHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972 307 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 379 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 379 (721)
||+|||+|.||.+.+. .+ +..|++|++||++++.++.....+++.+... .. ..++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCHH
Confidence 7999999999998766 23 4568899999999999888666554433321 11 1367778886
Q ss_pred cccCCCCEEEEccc----------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCC--CCcEEEecCCCCC
Q 004972 380 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 447 (721)
Q Consensus 380 ~~l~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~--~~r~ig~h~~~p~ 447 (721)
+++++||+||++++ |+...|..+++++.+.+++++++.+++|...+.+++..+.. | +++.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78899999999998 35889999999999999999999999999999999988763 6 89999999999
Q ss_pred CCC-----CeeEEecCCCCCHHHHHHHHHHHHHcCCee
Q 004972 448 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 480 (721)
Q Consensus 448 ~~~-----~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~ 480 (721)
..+ +..+ ++.-++....+.....+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 665 3332 2211122225555666667777643
No 182
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.26 E-value=2.2e-10 Score=117.90 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=131.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCC---c-eEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
.+||+|||+|.||.+++..++++|. + |++++++ +++++...+. . .+..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCCh
Confidence 3589999999999999999998873 3 7788874 5655443210 0 12334444
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-c
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 457 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~ 457 (721)
+.++++|+||.|+| ....+++++++.++++ +.+|+|.+.++++..+...++...+++..||..|......+..+ .
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 45789999999999 6677888898887766 45888999999999999888765678889998777666555444 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh-------hhhHHHHHHHH-HHHcCCCHHHHHHHH
Q 004972 458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR-------AFFPYSQSARL-LVSLGVDVFRIDSAI 519 (721)
Q Consensus 458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nR-------l~~~~~~Ea~~-l~~~Gv~~~~ID~a~ 519 (721)
....+++..+.+..+++.+|..+.+ .+.--...-- .++.++..... .++.|+++++-.+++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5667899999999999999999864 3321111100 11122222222 334488888877765
No 183
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.26 E-value=5.2e-11 Score=118.86 Aligned_cols=151 Identities=25% Similarity=0.325 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHH
Q 004972 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (721)
Q Consensus 15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (721)
|++|+++.+ ++ ....+|.++++.+.+|+++++|||+.. |.|+++... .++. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 666777654 11 235789999999999999999999974 777776532 2333 456
Q ss_pred hhCC--CcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------------
Q 004972 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG----------------- 143 (721)
Q Consensus 95 ~~~~--~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~----------------- 143 (721)
..++ ||+||+++|.|.|+|+.|+++||.+++++++.++...+. +|+-+.
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6676 999999999999999999999999999999988764332 344221
Q ss_pred c----c-----------------ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972 144 T----Q-----------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 192 (721)
Q Consensus 144 ~----~-----------------~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 192 (721)
+ . .-.|-+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 0 0112233333333 467899999999999999999987776655443
No 184
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.24 E-value=1.5e-11 Score=127.39 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=112.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++||+|||+|.||+++|..|+++||+|++|.++++.+++..... ...+++..-.+ ...+.+++|+ ++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~l--------p~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILL--------PPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccC--------CcccccccCHHHHHh
Confidence 36899999999999999999999999999999999988865431 11112221112 2457888888 6678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH------HHHhcccCCCCcEEEe-cCCCCC---CCCCee
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------NIVGEKTSSQDRIIGA-HFFSPA---HVMPLL 453 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i------~~l~~~~~~~~r~ig~-h~~~p~---~~~~lv 453 (721)
+||+|+.+|| .+..+++++++..++++++++++.+.++.. +++.+..-....+..+ -|.... ...|..
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta 148 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTA 148 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcE
Confidence 8999999999 999999999998899999999887776543 3444333221221111 111000 111111
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 488 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g 488 (721)
.++.+ .+++..+.+..++..=-.++....|..|
T Consensus 149 ~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 149 VVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred EEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 22222 4777777777777764445555566554
No 185
>PLN02858 fructose-bisphosphate aldolase
Probab=99.24 E-value=1.4e-10 Score=143.64 Aligned_cols=190 Identities=18% Similarity=0.176 Sum_probs=129.5
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
.+++|+|||+|.||.+||..|+.+|++|++||+++++.+... ..| ....++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence 357899999999999999999999999999999998876542 112 1112333 567
Q ss_pred CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV 449 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~--------~~ 449 (721)
++||+||.|||.+.++...++. .+.+.+.++.+++.. |+.++. ++++.+.. .-.|.+|.+.| ..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS-STVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999977666555543 355667788887754 444443 33333321 01255555433 22
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+.+.-++.| +++.+++++++++.+|+.++++...+| -++|.++. +.+.|++.+.+. |++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 223334444 688999999999999998887644344 34555543 335799999877 99999988887
Q ss_pred -HhcC
Q 004972 520 -RSFG 523 (721)
Q Consensus 520 -~~~G 523 (721)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 186
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.22 E-value=2.4e-10 Score=120.60 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=138.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+||+|||+|+||.++|..|...|++|+++++. .+..+.+. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876654 33333321 111 223333356789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC-------CCeeEEe-
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLEIV- 456 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~-------~~lvEiv- 456 (721)
||+|+.++|... ....+.+++.+.++++. ++|...++++..+...++...+++.+.|..|.+. +..+..+
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999432 45566777888888776 5678889999988777765568999999999984 6666433
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCch--hhhhhhhHHH---HHHHHHHHcCCCHHHHHHHH-
Q 004972 457 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTGF--AVNRAFFPYS---QSARLLVSLGVDVFRIDSAI- 519 (721)
Q Consensus 457 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v~-d~~gf--i~nRl~~~~~---~Ea~~l~~~Gv~~~~ID~a~- 519 (721)
.+...+.+..+.+..+++.+|.. .. .+. |.-+- ++.=..-+|+ .|++ ++.|++++.--...
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 56677899999999999999988 31 111 10000 0111112222 2555 78899998876665
Q ss_pred HhcCCCccHHHHHHhhchH
Q 004972 520 RSFGLPIGPFQLLDLAGYG 538 (721)
Q Consensus 520 ~~~G~p~Gpf~~~D~~Gld 538 (721)
..+ .|-..++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 333 4666677666764
No 187
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.22 E-value=5.6e-10 Score=120.76 Aligned_cols=171 Identities=10% Similarity=0.026 Sum_probs=107.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++||+|||+|.||+.+|..|+++|++|++||+++. .+...+ ....-......+......++..+++.+.+.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-------HGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-------cCceeecCCCcceecccceeEeccChhhccC
Confidence 46899999999999999999999999999999653 222211 0000000000000001123555666677789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEecCCCCCCCCCe-------eEEe
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL-------LEIV 456 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-~l~~~~~~~~r~ig~h~~~p~~~~~l-------vEiv 456 (721)
+|+||+||+ .....++++++.+.++++++|++.++++... .+...+.....+.|.+++......|. -+++
T Consensus 74 ~D~vil~vk--~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 74 ADLVLVTVK--SAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred CCEEEEEec--CcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 999999998 3445788899999999999888877777653 45555543223344444321111111 1112
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972 457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 488 (721)
Q Consensus 457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g 488 (721)
-+ ..+.++.+.++++..|..+.+.+|..+
T Consensus 152 ~~---~~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 152 IE---ASPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred ec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence 12 124568899999999988888888554
No 188
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.20 E-value=6e-10 Score=115.47 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=113.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
+||+|||+|+||++|+..+.++|. +|+++|++++.. + .....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence 479999999999999999999873 499999876531 0 0111222245
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 460 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~ 460 (721)
+.+||+||.|+| +....+++.++.++++++ +|+|..+++..+.+...++...+++...|..|........++ ++.+
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 888999999998887765 557888899999888877655567788888888777665544 5667
Q ss_pred CCHHHHHHHHHHHHHcCCeeEE
Q 004972 461 TSAQVILDLMTVGKIIKKVPVV 482 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~v~ 482 (721)
++++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 7899999999999999988765
No 189
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.18 E-value=4.4e-10 Score=113.50 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=109.9
Q ss_pred eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+||+||| +|.||+++|..|+++|++|+++++++++++........ .....+ +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccC-CC--------ceEEEeChHHHHhc
Confidence 3799997 89999999999999999999999999887664332111 000111 00 01222344466889
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-----------------HHHhcccCCCCcEEEecCCCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 447 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-----------------~~l~~~~~~~~r~ig~h~~~p~ 447 (721)
+|+||.||| .....++++++.+.++. ++|++.+.++.. +.+++.++...+++....+.|.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999999 77777888888776654 777777776665 2344444433577776543332
Q ss_pred CCC-------CeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004972 448 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 485 (721)
Q Consensus 448 ~~~-------~lvEiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d 485 (721)
... +....+.|. ++++.+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 211 112234443 677899999999999 999998875
No 190
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.17 E-value=3.8e-10 Score=134.52 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=117.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
++||+|||+|.||.+++..+.+.| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999998866532 112110 112333 45
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEecCCCCCC----------
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 448 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~h~~~p~~---------- 448 (721)
+++||+||+|+| .....++++++.++++++++|++.+|.. .+..+.+.+. ...||++.||+..+.
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 6778899999999888888876555432 2555555543 356899999975332
Q ss_pred --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 449 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 449 --~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
..+.+.++++..++++..+.+.++++.+|+.++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234456788888899999999999999999998884
No 191
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.15 E-value=2.1e-10 Score=123.23 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=99.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++||+|||+|.||++||..|+++|++|++|+++++..+.+.....+. .... +. ....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHc
Confidence 35899999999999999999999999999999998876653211100 0000 10 001124455565 5578
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-----HHHHhcccCC--CCcEE-EecCCCCCCC---CCe
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPL 452 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----i~~l~~~~~~--~~r~i-g~h~~~p~~~---~~l 452 (721)
+||+||+|+|.. ..++++ +.+++++++++.++++. ...+++.+.. ..++. ..-|..+... .+.
T Consensus 74 ~aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~ 147 (328)
T PRK14618 74 GADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA 147 (328)
T ss_pred CCCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence 999999999955 334444 44567777776666554 3344443321 11211 1112111111 112
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT 487 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~ 487 (721)
..++.+ .+++.++.++++++..|..+.+..|..
T Consensus 148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~ 180 (328)
T PRK14618 148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRV 180 (328)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 233333 378899999999999998887544433
No 192
>PLN02712 arogenate dehydrogenase
Probab=99.13 E-value=6.1e-10 Score=129.06 Aligned_cols=154 Identities=10% Similarity=0.023 Sum_probs=110.0
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 382 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 382 (721)
..+||+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.| +...++.+ .+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence 3468999999999999999999999999999998542 2211 111 22234443 24
Q ss_pred C-CCCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCC-e----e
Q 004972 383 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-L----L 453 (721)
Q Consensus 383 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~-l----v 453 (721)
. +||+||.||| ......++.++.. .++++++|++.+|+ .++..+....+...+|++.||..++.... . .
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 6777788888765 57889999987776 44555555555555799999988776531 1 1
Q ss_pred -----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 454 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 454 -----Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
-++.++....+.++.+..+++.+|.+++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123344456677778899999999999883
No 193
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.12 E-value=5.5e-11 Score=113.42 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=79.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 385 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 385 (721)
||+|||+|.||.++|..++.+|++|++|.++++.++...+... ....+.. ......+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-------n~~~~~~---~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-------NPKYLPG---IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-------ETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-------CCCCCCC---cccCcccccccCHHHHhCcc
Confidence 7999999999999999999999999999999988776543211 0000110 1112357788888 678999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
|+||.+|| ....+++++++.+++++++++++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 8888999999999999999999888776
No 194
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.11 E-value=4.2e-09 Score=112.10 Aligned_cols=167 Identities=15% Similarity=0.166 Sum_probs=108.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
+||+|||+|.||+++|..|+.+|++|++|+++++. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 47999999999999999999999999999998531 11 34578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCCHHH------HhcccCCCCcEEEecCCCCCC------CCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP 451 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~i~~------l~~~~~~~~r~ig~h~~~p~~------~~~ 451 (721)
||+||.|+|. ...+.++.++.++ +++++++++.++++.+.. +....-...+++. +..|.. ..+
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~--i~gp~~a~ei~~~~~ 123 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVV--LSGPNLSKEIQQGLP 123 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEE--EECCCcHHHHhcCCC
Confidence 9999999994 5677888888764 678888888776554332 1111101112221 011110 001
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc----------------------hhhhhh---hhHHHHHHHHHH
Q 004972 452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLLV 506 (721)
Q Consensus 452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g----------------------fi~nRl---~~~~~~Ea~~l~ 506 (721)
..-++.+ .+.+..+.+.++++..|..+++..|..| +..|-. +...+.|++.+.
T Consensus 124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~ 201 (308)
T PRK14619 124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVG 201 (308)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 2222223 3788999999999999988886666444 222222 222245888887
Q ss_pred Hc-CCCHHHH
Q 004972 507 SL-GVDVFRI 515 (721)
Q Consensus 507 ~~-Gv~~~~I 515 (721)
+. |++++.+
T Consensus 202 ~~~G~~~~t~ 211 (308)
T PRK14619 202 THLGAQTETF 211 (308)
T ss_pred HHhCCCcccc
Confidence 77 7766555
No 195
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.09 E-value=5.1e-10 Score=113.02 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~ 106 (721)
.-+...+.+|.+.++++.+|+++++|||+..+..| ++.+++++. +.+ +.+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence 34567789999999999999999999999887777 777766652 333 346668999999999
Q ss_pred CcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------cccc----------------
Q 004972 107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG-----------TQRL---------------- 147 (721)
Q Consensus 107 G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~-----------~~~l---------------- 147 (721)
| |.+||+.|+++||.+++.+.+.|+...+. +|+-+. ..+.
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 88999999999999999999999986432 233221 0000
Q ss_pred -------------ccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHH
Q 004972 148 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 189 (721)
Q Consensus 148 -------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (721)
.|-+..... +-+..|..+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 111222222 23345999999999999999999987777654
No 196
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.07 E-value=3.1e-10 Score=120.59 Aligned_cols=126 Identities=20% Similarity=0.315 Sum_probs=94.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
.+||+|||+|.||+++|..++..|+ +|+++|++++.++.-. ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 9999999998753211 1111110 0011113577778889999
Q ss_pred CCCEEEEcc-------------------cCChHHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 004972 384 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 442 (721)
Q Consensus 384 ~aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~i~~l~~~~~~~-~r~ig~h 442 (721)
+||+||++. +++..+++++++++.+++++. .|++||++.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567888999999999999764 4556888887777777766654 7898876
No 197
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.06 E-value=1.6e-09 Score=111.98 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=102.3
Q ss_pred HHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCChH
Q 004972 320 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 397 (721)
Q Consensus 320 iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~ 397 (721)
||..|.++| ++|+.||++++.++.+. +.|.++ ...++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence 688899999 78999999999877753 333222 11222567899999999999 99
Q ss_pred HHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCC------------CCCCeeEEecCCCCCH
Q 004972 398 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 463 (721)
Q Consensus 398 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~------------~~~~lvEiv~~~~t~~ 463 (721)
....+++++.++++++++|++.+|.. ++..+........+|+|.||...+ ..+..+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 99999999999999999999877753 344555555556799999997655 2355677889999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE
Q 004972 464 QVILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v 483 (721)
+.++.+..|++.+|.+++.+
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 99999999999999999887
No 198
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.04 E-value=8.2e-10 Score=107.90 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=74.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh--hcCceeccCcc-cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDYS-EF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~~-~l 382 (721)
|||+|||+|.+|..+|..|+.+|++|+++|++++.++...+.... ..+.+ + ++-..+. .+++.++++.+ ++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p----~~E~~-l-~~ll~~~~~~~~l~~t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELP----IYEPG-L-DELLKENVSAGRLRATTDIEEAI 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSS----S-CTT-H-HHHHHHHHHTTSEEEESEHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccc----ccccc-h-hhhhccccccccchhhhhhhhhh
Confidence 589999999999999999999999999999999998875432000 00000 0 0111111 25788898884 48
Q ss_pred CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 383 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 383 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
++||++|.|||. |.....+..++|.++++++.+++. -|++++.
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG 125 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG 125 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence 999999999984 456678889999999999888764 4455543
No 199
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=101.29 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=106.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
|++|+|+|+|+||+++|..|+++||+|++-.++.+....+... .....++..++.++++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~--------------------~l~~~i~~~~~~dA~~~ 60 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAA--------------------ALGPLITGGSNEDAAAL 60 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHH--------------------hhccccccCChHHHHhc
Confidence 5789999999999999999999999999996665543332211 11123556666688899
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC----------------HHH-HhcccCCCCcEEE-ec----
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LNI-VGEKTSSQDRIIG-AH---- 442 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~----------------i~~-l~~~~~~~~r~ig-~h---- 442 (721)
||+||.+|| ......+++++...+. +.|+++.|..+. .++ +++.++.. +++. .|
T Consensus 61 aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a 136 (211)
T COG2085 61 ADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPA 136 (211)
T ss_pred CCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCH
Confidence 999999999 8888899999988776 778887665421 112 22223322 3322 12
Q ss_pred --CCCCCCC-CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 443 --FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 443 --~~~p~~~-~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
+-+-++. .+..-.+++. +.++.+.+.++.+.+|..|+.++.
T Consensus 137 ~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 137 AVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1111122 3333345553 788999999999999999999875
No 200
>PLN02712 arogenate dehydrogenase
Probab=99.02 E-value=5.6e-09 Score=121.11 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=106.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c-
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 382 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 382 (721)
.+||+|||+|.||.++|..|.+.|++|++||++... +.+. +. + +...++.+. +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~------------G-v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SL------------G-VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------Hc------------C-CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2111 11 1 222344432 3
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHH-hhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCCC-----CeeE
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 454 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~~-----~lvE 454 (721)
.+||+||.|+| ......++.++. +.++++++|++.+|... ...+...++....|++.||...+... ....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 677888888885 56788999887766532 33444444444479999997666421 1112
Q ss_pred Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 455 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 455 iv~-----~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
+.. .+....+.++.+.++++.+|.+++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222345667888899999999999984
No 201
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.01 E-value=5.6e-10 Score=118.29 Aligned_cols=122 Identities=18% Similarity=0.288 Sum_probs=88.5
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972 308 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 386 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 386 (721)
|+|||+|.||.++|..++..|+ +|+++|++++.++...-.+.. .. .......+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~----~~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ----AA--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH----hh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754321111111 00 0011123577777788899999
Q ss_pred EEEEcc--------------cCChHHHHHHHHHHHhhCCCCeE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 004972 387 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 441 (721)
Q Consensus 387 lVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~i~~l~~~~~~-~~r~ig~ 441 (721)
+||+++ +++..+++++++++.+++++..+ +++|.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 67899999999999999977764 4577777666666665553 4677774
No 202
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.00 E-value=1e-09 Score=116.85 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=84.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.... .. .....+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~---------~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PV---------EGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hh---------cCCCcEEEeCCCHHHHC
Confidence 4799999999999999999999876 99999999887543221111110 00 01113566677888899
Q ss_pred CCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCeE-EEecCCCCCHHHHhcccC-CCCcEEEe
Q 004972 384 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTS-SQDRIIGA 441 (721)
Q Consensus 384 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~i~~l~~~~~-~~~r~ig~ 441 (721)
+||+||+++ .++..+++++++++.+++++..+ +++|.+.+....+..... .+.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 35668899999999999866533 335554443333333333 23566664
No 203
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.98 E-value=5.6e-09 Score=112.58 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=115.0
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
+.++||+|||+|.||+++|..|+++| +|++|.++++..+...+...+ ......+. ....++..+++. +.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence 34578999999999999999999999 799999999887765431100 00000010 011346667777 56
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH------H-HHhcccCCCCcEEEecCCCCCC---CCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRIIGAHFFSPAH---VMP 451 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i------~-~l~~~~~~~~r~ig~h~~~p~~---~~~ 451 (721)
++++|+||.||| ....+++++++.+++++++++++.+.++.. + .+.+.++.....+-..|..+.. ..+
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~ 152 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA 152 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence 799999999999 888999999999999998878777777664 2 3334333211111222221111 111
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972 452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 495 (721)
Q Consensus 452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~ 495 (721)
...++.. .+++..+.+..++..-+-.+....|..|...--.+
T Consensus 153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~al 194 (341)
T PRK12439 153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGAL 194 (341)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHH
Confidence 1112222 26778888888888878777777887765444443
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.98 E-value=1.4e-09 Score=115.88 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+||+|||+|.||.++|..++..| .+|+++|++++.++.-.-..... .. ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----ST--------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhCC
Confidence 48999999999999999999999 59999999988755211111100 00 0001124666678889999
Q ss_pred CCEEEEcc--cCCh------------HHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 004972 385 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 442 (721)
Q Consensus 385 aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~i~~l~~~~~~~-~r~ig~h 442 (721)
||+||+++ |++. .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 7666 88999999999998776 4556788777666666655554 7888876
No 205
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.97 E-value=7.9e-09 Score=114.48 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=120.3
Q ss_pred CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-c---cCCCCEEEEc
Q 004972 316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E---FKDVDMVIEA 391 (721)
Q Consensus 316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~---l~~aDlVIea 391 (721)
||..||.+|+++|++|++||+++++.+...+. .+. . ..+....+++ . ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999998765320 010 0 1233444552 2 3358999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhcccCCCCcEEEecCCCCCC--------CCCeeEEecCCCC
Q 004972 392 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAH--------VMPLLEIVRTERT 461 (721)
Q Consensus 392 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~--l~~~~~~~~r~ig~h~~~p~~--------~~~lvEiv~~~~t 461 (721)
||.+.. ..+++..+.+.+.++.||++.+++.+... ..+.+.. .|+||+..|- .++ -+++|.
T Consensus 62 v~~g~~-v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~GG-- 132 (459)
T PRK09287 62 VKAGAP-VDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPGG-- 132 (459)
T ss_pred CCCchH-HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEeC--
Confidence 996655 45566888899999999887665544332 2222321 2555544332 222 344443
Q ss_pred CHHHHHHHHHHHHHcCCee-------EEEcCCC-c----hhhhhhhhHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004972 462 SAQVILDLMTVGKIIKKVP-------VVVGNCT-G----FAVNRAFFPY---SQSARLLVSL--GVDVFRIDSAIR 520 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~-------v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~~--Gv~~~~ID~a~~ 520 (721)
++++++.++++++.++.++ .++++.. | .+.|-+.+.. +.|++.+++. |++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7999999999999999886 8888732 2 2345555444 4599999983 899999988884
No 206
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.95 E-value=7.1e-08 Score=99.28 Aligned_cols=147 Identities=18% Similarity=0.127 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccC
Q 004972 316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 394 (721)
Q Consensus 316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe 394 (721)
=|.+||.+|+++||+|++||+++++.+... .+.+.+.| ....++. +.+++||+||.|+|+
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd 91 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF 91 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence 488999999999999999999987654211 01112222 2233444 778999999999994
Q ss_pred ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCC----C---CcEEEecCCCCC-CCCCeeEEecC------CC
Q 004972 395 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS----Q---DRIIGAHFFSPA-HVMPLLEIVRT------ER 460 (721)
Q Consensus 395 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~----~---~r~ig~h~~~p~-~~~~lvEiv~~------~~ 460 (721)
+ ...++++..+.+.+++++++++ +||+++..+...+.. . -.+..+||-.=| ....-.-++.+ ..
T Consensus 92 ~-aaV~eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~ 169 (341)
T TIGR01724 92 G-KGTFSIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEM 169 (341)
T ss_pred H-HHHHHHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccccc
Confidence 4 4445566778888999998865 566666544443321 2 245556664322 12221223332 23
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEE
Q 004972 461 TSAQVILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~v~v 483 (721)
.++|.++++.++.+..|+.+.++
T Consensus 170 A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 170 ATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred CCHHHHHHHHHHHHHhCCCeeec
Confidence 48999999999999999999988
No 207
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.94 E-value=5.4e-10 Score=118.09 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHH-HHHHHHHHHHh
Q 004972 616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQL 686 (721)
Q Consensus 616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~ 686 (721)
++++|.||++.+++|||++++++|++ |++|||.++.+|+|+|...-|||+.+|..|+|. +...++++.+.
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~ 256 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPA 256 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhh
Confidence 58999999999999999999999999 999999999999999844459999999999997 33444544433
No 208
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.94 E-value=8.3e-09 Score=99.85 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=101.3
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
.+|.++. .+++...+.+.++++++++++ ++.||+.=. |.|+++.. ...++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence 4556654 366778888999999998776 777777422 22333322 22444 6688
Q ss_pred hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc----c---ccc------ccccc--CHHHHHHHH
Q 004972 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP----G---TQR------LPRLV--GLSKAIEMM 160 (721)
Q Consensus 96 ~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P----~---~~~------l~r~~--G~~~a~~l~ 160 (721)
.+++|+|+.|+|.|.++|+.++++||++++++++.||.++.-.+-.. . ... +.+.- ....+..|+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv 135 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMV 135 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 89999999999999999999999999999999999999865422111 1 000 11111 344455665
Q ss_pred HcC-------------CCcCHHHHHHcCCccEEcCC-chHH
Q 004972 161 LLS-------------KSITSEEGWKLGLIDAVVTS-EELL 187 (721)
Q Consensus 161 ltg-------------~~~~a~eA~~~Glv~~vv~~-~~l~ 187 (721)
-.. -.++++||++.|++|.+.+. ++|+
T Consensus 136 ~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 136 DKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred hhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 544 27999999999999999853 4443
No 209
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.92 E-value=2.5e-09 Score=93.04 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=69.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC---CceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec--cCcc
Q 004972 307 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS 380 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~ 380 (721)
||+|||+|.||.+|+..|.++| ++|+++ +++++++++..++ . ....+ +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------------------~-~~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------------------Y-GVQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------------------C-TTEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------------------h-ccccccCChHH
Confidence 7999999999999999999999 899955 9999998775321 0 12222 3347
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
.++++|+||.||| +....+++.++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999999 88888999999 66678888887654
No 210
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.91 E-value=6e-09 Score=94.60 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
.||+|||+|.+|..++..|.++|++|.. +.++++..+++... .......+..+.+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------ccccccccccccccc
Confidence 5899999999999999999999999875 56777666654221 112222333366899
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhh--CCCCeEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 443 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~ 443 (721)
+|+||++||++ ...++.++|... ..++++|+-.+...+.+-+............+||
T Consensus 69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999966 567888999877 7788888754444555555554445555666775
No 211
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.83 E-value=1.2e-08 Score=109.13 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=79.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CceEEEeC-----CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972 307 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 373 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 373 (721)
||+|||+|.||+++|..++.+| ++|++|.+ +++..+......+ ....+. . -....++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~-------n~~ylp-g--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHE-------NVKYLP-G--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCC-------CccccC-C--CcCCCCe
Confidence 6999999999999999999999 99999998 4443333221100 000010 0 0012457
Q ss_pred eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
.+++|+ +.+++||+||.+|| .+..+.+++++.++++++.++++.+.++...
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 788888 56799999999999 8999999999999999888888877766543
No 212
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.83 E-value=1.3e-08 Score=109.50 Aligned_cols=167 Identities=16% Similarity=-0.000 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-------CceEEEeCCHHH-----HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML 373 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 373 (721)
+||+|||+|.||+++|..++++| ++|.+|.++++. ++...+.. .....+.. -....++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~-------~N~~ylp~---~~Lp~ni 81 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKH-------ENVKYLPG---IKLPDNI 81 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcC-------CCcccCCC---CcCCCce
Confidence 58999999999999999999997 899999999863 33322110 01111110 0122568
Q ss_pred eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHh--hCCCCeEEEecCCCCCH--------HHHhc-ccCCCCcEEE-
Q 004972 374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL--------NIVGE-KTSSQDRIIG- 440 (721)
Q Consensus 374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~i--------~~l~~-~~~~~~r~ig- 440 (721)
..++|+ +++++||+||.+|| ++..+++++++.+ +++++++++|.+.++.+ +++.. .+.. ++..
T Consensus 82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~L 157 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCAL 157 (365)
T ss_pred EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEEE
Confidence 888887 57899999999999 9999999999998 77778788876665543 33322 2211 2211
Q ss_pred ecCCCCC---CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972 441 AHFFSPA---HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 488 (721)
Q Consensus 441 ~h~~~p~---~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g 488 (721)
.-|..+. ...|..-++.+ .+.+..+.+..++..=..++....|..|
T Consensus 158 sGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 158 SGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred ECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 1111100 11111112222 2677777777777754455555566554
No 213
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=6.5e-08 Score=103.97 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=104.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc-CC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-KD 384 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l-~~ 384 (721)
||+|||+|.||+.+|..|+++|++|++|+++++.++.......+ .. .+.. ......+..+++.+ .+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-----~~--~~~~---~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-----LK--YLPT---CHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-----cc--cCCC---CcCCCCeEEeCCHHHHHhCC
Confidence 79999999999999999999999999999999877664321000 00 0000 00112355566663 44 58
Q ss_pred CCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCCCCH------HH-HhcccCCCCcEEEecCCCCC------CCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL------NI-VGEKTSSQDRIIGAHFFSPA------HVM 450 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~i------~~-l~~~~~~~~r~ig~h~~~p~------~~~ 450 (721)
+|+||.||| .....++++++.+ ++++++.+++.++++.. ++ +...++. .++.. +..|- ...
T Consensus 72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~-~~~~~--~~Gp~~a~~~~~~~ 146 (326)
T PRK14620 72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN-NPIAI--LSGPSFAKEIAEKL 146 (326)
T ss_pred CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC-CceEe--ecCCcHHHHHHcCC
Confidence 999999999 8888899999998 88888766666666533 22 3333322 12211 01111 111
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHH
Q 004972 451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY 498 (721)
Q Consensus 451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~ 498 (721)
+..-.+.+ .+.+..+.+..++..-+..+....|..|...-.++...
T Consensus 147 ~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ 192 (326)
T PRK14620 147 PCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNI 192 (326)
T ss_pred CcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHH
Confidence 11001122 34555566666666656566666777776554444333
No 214
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.80 E-value=4.9e-08 Score=103.91 Aligned_cols=173 Identities=13% Similarity=0.063 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-ccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 384 (721)
+||+|||+|.||+.+|..|+++|++|+++++ ++.++...+. .+ .+....- + ..-.....++.+ ...+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHG-----D-AVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCC-----e-EEecceeecCHHHccCC
Confidence 3799999999999999999999999999999 7666553210 00 0000000 0 000112234443 3488
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EecC-----CCCCCCC---C-ee
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHF-----FSPAHVM---P-LL 453 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~i-g~h~-----~~p~~~~---~-lv 453 (721)
+|+||.|++ .....++++++.+.++++++|++...++.. ..+...++ ..+++ |..+ ..|-.+. . .+
T Consensus 69 ~d~vilavk--~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~-~~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVK--AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFG-RERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEec--ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCC-cccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 999999998 455677888898888888888776667654 34444443 22433 2332 2221110 0 01
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 493 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nR 493 (721)
.+-.-+....+..+.+...+...|..+....|........
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~K 185 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRK 185 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHH
Confidence 1111122234566777788888886666666654433333
No 215
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.8e-07 Score=91.06 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 381 (721)
++|+.||+|.||..++..+.+.||+|+.||+++++++.+.. .+ ++..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence 47999999999999999999999999999999999887642 22 1112221 33
Q ss_pred cCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe-------e
Q 004972 382 FKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------L 453 (721)
Q Consensus 382 l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l-------v 453 (721)
+..--.|-..|| .. +..++++++.+.+.++.+|++...+.--..+...-...+ .|+||++--..+.. .
T Consensus 57 L~~pr~vWlMvP--ag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~ 132 (300)
T COG1023 57 LSAPRIVWLMVP--AGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYC 132 (300)
T ss_pred cCCCcEEEEEcc--CCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCce
Confidence 455678888998 44 788999999999999999997665533333322211112 27888653322211 1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCch----hhhhhhhHH---HHHHHHHHHcC---CCHHHHHHHH
Q 004972 454 EIVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGF----AVNRAFFPY---SQSARLLVSLG---VDVFRIDSAI 519 (721)
Q Consensus 454 Eiv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d-~~gf----i~nRl~~~~---~~Ea~~l~~~G---v~~~~ID~a~ 519 (721)
-.|.| ++++++.+.++++.+-. -..++++ ..|- |-|-|=+.+ +.|.+.++++. +|.++|-+++
T Consensus 133 lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 133 LMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred EEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 13344 79999999999998765 3456654 3343 336664544 35899999884 4888888887
No 216
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.77 E-value=6.5e-07 Score=95.58 Aligned_cols=178 Identities=8% Similarity=0.071 Sum_probs=106.5
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 382 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 382 (721)
+..+||+|||+|.||+.+|..|+++|++|+++.+++. +.... +.+.-....+.. ....+..+++.+.+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~---~g~~~~~~~~~~-------~~~~~~~~~~~~~~ 70 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRE---NGLQVDSVHGDF-------HLPPVQAYRSAEDM 70 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHh---CCeEEEeCCCCe-------eecCceEEcchhhc
Confidence 3456899999999999999999999999999999863 22110 000000000100 00112334444556
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEE-ecC-----CCCCC---CCC-
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VMP- 451 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig-~h~-----~~p~~---~~~- 451 (721)
..+|+||.||+ .....++++.+.+.+.+++++++...++...+ +...++ ++++++ ..+ ..|.. ...
T Consensus 71 ~~~D~vilavK--~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLK--TTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEec--CCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998 33346788889898988888888777877654 444443 345443 222 22221 100
Q ss_pred eeEEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972 452 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 495 (721)
Q Consensus 452 lvEiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~ 495 (721)
-+.+-.....+ .+.++.+..+++..|-.+.+..|....+..+++
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 01111111112 466777888888888887777776655554443
No 217
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.73 E-value=3e-08 Score=104.91 Aligned_cols=123 Identities=17% Similarity=0.266 Sum_probs=79.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+||+|||+|.||+++|..++..|+ +|+++|++++..+ +.. .+..+ .+ .......+++++++++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 8999999876433 221 01111 11 00111246888888877999
Q ss_pred CCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEe
Q 004972 385 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA 441 (721)
Q Consensus 385 aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~ 441 (721)
||+||.+++ .|..+.+++.+++.++.+ +++++..|.. .....+..... .+.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999997 255677777788888864 5555443433 22222323322 34566664
No 218
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.72 E-value=1.3e-07 Score=100.54 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||+|||+|.||+.+|..|+++|++|++++++++..+...+.- + .+..+. ....+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g---~--~~~~~~--------~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENG---L--RLEDGE--------ITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcC---C--cccCCc--------eeecccCCCChhHcCCC
Confidence 3799999999999999999999999999999887766543210 0 000110 00112233444445899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhccc
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT 432 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~ 432 (721)
|+||.|++ ......+++++.+.+.++++|++...++.. ..+...+
T Consensus 68 d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 68 DLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred CEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 99999998 445678889999988888877777777664 3444444
No 219
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.69 E-value=2.7e-07 Score=90.62 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=84.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+||+|||+ |.||.-++..|.++|+.|+ +++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence 38999999 9999999999999999985 146
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-----CeeEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTE 459 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~-----~lvEiv~~~ 459 (721)
||+||.|+| .....++++++. .+|++.+|... .+.+. ..+|+|.||...|... ..+-+ ..+
T Consensus 32 ~DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 899999999 777777777664 25767666544 22222 3479999997654332 22223 466
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 460 RTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
.++++.++.+..+++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 788899999999998 88887773
No 220
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.7e-07 Score=93.81 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=136.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 381 (721)
..|||||+|.||+.+|.+++++|+.|.+|+|+.++.+...+. ... + ..|..+.++ +.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~~-~-----------k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RAK-G-----------KNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Ccc-C-----------CCccccCcHHHHHHH
Confidence 569999999999999999999999999999999998875431 111 1 134444444 33
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh--cc-cCCCCcEEEecCC-------CCCCCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EK-TSSQDRIIGAHFF-------SPAHVMP 451 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~--~~-~~~~~r~ig~h~~-------~p~~~~~ 451 (721)
++.---|++.|--- .....++++|.+++.++.|+++...+.-..++. .. ....-.|+|+--- +.|.
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--- 140 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--- 140 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC---
Confidence 55667777777533 334688899999999999999866553333222 22 2233457776542 2333
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCee------EEEc-CCCchhh----hhhhh---HHHHHHHHHHHc--CCCHHHH
Q 004972 452 LLEIVRTERTSAQVILDLMTVGKIIKKVP------VVVG-NCTGFAV----NRAFF---PYSQSARLLVSL--GVDVFRI 515 (721)
Q Consensus 452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~------v~v~-d~~gfi~----nRl~~---~~~~Ea~~l~~~--Gv~~~~I 515 (721)
|+|| .++++.+.+.++++.+..+. .+++ +..|-.+ |-|=+ .++.|++.++.+ |+|.++|
T Consensus 141 ---iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei 215 (473)
T COG0362 141 ---IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEI 215 (473)
T ss_pred ---cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4555 48999999999999875432 3343 4555443 55533 356799999988 4599999
Q ss_pred HHHHHhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972 516 DSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 546 (721)
Q Consensus 516 D~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 546 (721)
-.++..+.- |.+ |..=+++..+++..
T Consensus 216 ~~vF~~WN~--geL---~SYLIeIT~~IL~~ 241 (473)
T COG0362 216 AEVFEEWNK--GEL---DSYLIEITADILRK 241 (473)
T ss_pred HHHHHHhcc--Ccc---hHHHHHHHHHHHhh
Confidence 999854432 322 22334555555543
No 221
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.62 E-value=7.5e-08 Score=100.08 Aligned_cols=99 Identities=29% Similarity=0.377 Sum_probs=76.7
Q ss_pred EEEEcC-CCCcHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC-ccc
Q 004972 308 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 381 (721)
Q Consensus 308 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 381 (721)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 699999999988777555444332211 0135777777 488
Q ss_pred cCCCCEEEE--------------cccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 382 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 382 l~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
+++||+||+ .+.++..+++++.+++.+++ ++++++..|
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t 119 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS 119 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 999999999 66678889999999999998 555555433
No 222
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.59 E-value=5.4e-07 Score=86.28 Aligned_cols=146 Identities=24% Similarity=0.295 Sum_probs=104.4
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
.+|.++. .+++.+..-|.+.++.++++ +++.|+|.=. |.|+++... ..++ +.|.
T Consensus 2 ~vi~i~G----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~----------------~~I~-~~i~ 55 (172)
T cd07015 2 YVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA----------------GNIV-QRIQ 55 (172)
T ss_pred EEEEEee----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH----------------HHHH-HHHH
Confidence 3455543 36677788889999988765 5777777532 334433321 2344 5577
Q ss_pred hCCCcEEEEEC---CcccccchHhhhhcCEEEeeCCceEeCcccccCccc-------c----cc------ccccccC--H
Q 004972 96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-------G----TQ------RLPRLVG--L 153 (721)
Q Consensus 96 ~~~~p~Iaav~---G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-------~----~~------~l~r~~G--~ 153 (721)
..++||++.|+ |.|..+|.-++++||.+++.+++.++....-.|.-+ + .. -+.+.-| .
T Consensus 56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~ 135 (172)
T cd07015 56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA 135 (172)
T ss_pred hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence 88999999999 999999999999999999999999999876433212 1 11 1222233 5
Q ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEEcCC-chHH
Q 004972 154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELL 187 (721)
Q Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~ 187 (721)
..+..++.....++|+||++.|++|.++.. ++|+
T Consensus 136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 136 TIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 567788888899999999999999999854 4443
No 223
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.50 E-value=3.1e-06 Score=86.87 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=118.4
Q ss_pred CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccCChHHHHHHHHHHH
Q 004972 329 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 407 (721)
Q Consensus 329 ~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~ 407 (721)
++|++++|++++++...+. ++ +..+++. +.+.+||+||.||+ +....+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 5899999999886654211 11 2233343 45688999999999 888889999998
Q ss_pred hhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972 408 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC 486 (721)
Q Consensus 408 ~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 486 (721)
+.+.++.+|+|...++++.++...++...+++.+.|+.|......+..+ .++..+++..+.+..++..+|....+- |.
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~-E~ 143 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELP-EA 143 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEEC-HH
Confidence 8777778999999999999999888755679999999988887777666 567788899999999999999777542 21
Q ss_pred --Cchhh-hhh---hhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004972 487 --TGFAV-NRA---FFPYSQSAR--LLVSLGVDVFRIDSAI 519 (721)
Q Consensus 487 --~gfi~-nRl---~~~~~~Ea~--~l~~~Gv~~~~ID~a~ 519 (721)
..+.+ .-. ++.++.|++ ..+..|+++++-.+.+
T Consensus 144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 001 112233333 3445689888887776
No 224
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.46 E-value=8.6e-07 Score=82.76 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=70.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 382 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 382 (721)
+||+|||+ |.+|..+|..+...++ +++++|++++.++.....+++....... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999876 8999999998766544444332221111 112223667899
Q ss_pred CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+||.+.-. +..+.+++..++.++. ++.+++..|..
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 999999988732 3446666777788887 45555544443
No 225
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.46 E-value=5e-07 Score=96.60 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||+|.||.++|..+...|++|++||++++..... +...+++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 479999999999999999999999999999987542110 1123344 56799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 433 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~ 433 (721)
||+|+.++|...+....+.+++.+.++++++|+..+-+..+ ..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999988887777778888889999988865555443 45555553
No 226
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.44 E-value=9e-08 Score=99.29 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=127.3
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccchHHHHHHH
Q 004972 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (721)
Q Consensus 13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (721)
.+++.+.++ |+.|..|.++.++|..-++.+..+..+++..+|+.. +.|++|.|..++.-... .........+++++
T Consensus 65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h-~fspa~~m~LlEii- 141 (380)
T KOG1683|consen 65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH-FFSPAHWMQLLEII- 141 (380)
T ss_pred cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc-ccCHHHHHHHHHHH-
Confidence 478888887 889999999999999999999999889999998876 67999999988754221 11111222345666
Q ss_pred HHHhhCCCcEEEEECCcccccc--hHhhhhcCEEEee--CCceEeCcccccCc-ccc------ccccccccCHHHHHHHH
Q 004972 92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGV-IPG------TQRLPRLVGLSKAIEMM 160 (721)
Q Consensus 92 ~~l~~~~~p~Iaav~G~a~GgG--~~lalacD~ria~--~~a~~~~pe~~~Gl-~P~------~~~l~r~~G~~~a~~l~ 160 (721)
....+++.|+.+|+||++--|+ |-++.+|+||+.. ..-..+..+..+++ .|. +.-++..+|+ .-+
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~----~~L 217 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGE----RAL 217 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccH----HHH
Confidence 5678999999999999999888 8999999999998 55455778887773 332 3344555554 445
Q ss_pred HcCCCcCHHHHHHcCCccEEcCC
Q 004972 161 LLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 161 ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
--+.-++..||++-|+++++.|.
T Consensus 218 ~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 218 ADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hhccCccHHHHHhhccchhccch
Confidence 66778999999999999999985
No 227
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.37 E-value=6.5e-06 Score=81.05 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=97.2
Q ss_pred cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-CccccCCCCEEEEcccCC
Q 004972 317 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIES 395 (721)
Q Consensus 317 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l~~aDlVIeavpe~ 395 (721)
|+.||..++.+||+|++.|.+.+-.+... ++..-+. .+..++ |.++++.+.+.|+-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence 78899999999999999999877655421 1111112 244444 458899999999998833
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH----hcccCCCCcEEEecCCCCCCC----CCeeEEecCCCC------
Q 004972 396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTERT------ 461 (721)
Q Consensus 396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l----~~~~~~~~r~ig~h~~~p~~~----~~lvEiv~~~~t------ 461 (721)
. ..-.+.++|.++++.+++|. ||.+.++-.+ ...+..+.+-+|+..+.|.-+ ....-++.+..+
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 1 44577788999999999874 5655554333 333344444455554444421 111224443333
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004972 462 SAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
++|.++++.++++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 78999999999999999998873
No 228
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.35 E-value=1.5e-06 Score=83.13 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (721)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G 107 (721)
++..+.+++.+.|..++.++..+.|+|.=. |.|+++. ....++ +.|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence 567888999999999998877777777422 2333321 122444 6677889999999999
Q ss_pred cccccchHhhhhcC--EEEeeCCceEeCcccccCcccc---c---------------cccccc--cCHHHHHHHHHcCCC
Q 004972 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG---T---------------QRLPRL--VGLSKAIEMMLLSKS 165 (721)
Q Consensus 108 ~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~---~---------------~~l~r~--~G~~~a~~l~ltg~~ 165 (721)
.|.++|.-++++|| .|++.++++|.+....-+.... . ..+.+. .......+++-.+..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 6999999999875543222111 0 111222 235555677777788
Q ss_pred cCHHHHHHcCCccEE
Q 004972 166 ITSEEGWKLGLIDAV 180 (721)
Q Consensus 166 ~~a~eA~~~Glv~~v 180 (721)
++|+||+++||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 899999999999975
No 229
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.35 E-value=9.3e-07 Score=87.55 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 379 (721)
.||+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-... .-.-|+...+.+...+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-------~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYK-------ASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCC-------hhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999999 69999999 6665541100 0112222223333344333332222
Q ss_pred -----------cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972 380 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417 (721)
Q Consensus 380 -----------~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 417 (721)
+.++++|+||+| .++...+..++.++....+...++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 236789999999 6899999999999988877766665
No 230
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.33 E-value=2e-06 Score=91.62 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh---CHHHHHHHHHHHHHhhCC-CCC
Q 004972 617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFK 692 (721)
Q Consensus 617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~ 692 (721)
++++.||++.++++||+.++++|++ |+++||.++..|+|+|...-|||+++|.. |++.+......++...++ ++.
T Consensus 186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~ 264 (308)
T PRK06129 186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ 264 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC
Confidence 5789999999999999999999999 99999999999999884445999999987 999999999999888876 888
Q ss_pred CCHHHHHHHH
Q 004972 693 PSRFLEERAT 702 (721)
Q Consensus 693 p~~~l~~~~~ 702 (721)
|+|+++++++
T Consensus 265 ~~~~~~~~~~ 274 (308)
T PRK06129 265 PVPWDGELVA 274 (308)
T ss_pred CchhhHHHHH
Confidence 9999998884
No 231
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.32 E-value=5.3e-05 Score=80.19 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++.++ .|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 4899999999999999999999988999888876 555432 1211000000000112223334567799
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEecCCCCCCCCCeeEEec-------
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR------- 457 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~------- 457 (721)
|+||.++- .-...+.++.+.++++++++|++...++...+ +....+...-+.|+-+.......+..-...
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999885 66777899999999999998888888877665 344443332344444433333322211111
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 458 --TERTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 458 --~~~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
.....++.++.+.+.++..|-...+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 1112336677777777666665555433
No 232
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.32 E-value=1.1e-06 Score=93.31 Aligned_cols=101 Identities=25% Similarity=0.308 Sum_probs=69.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+||+|||+|.+|+++|..++..| ++|+++|++++.++.....+.+....... . ..+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~-~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPS-P-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCC-C-----------eEEE-cCCHHHhC
Confidence 48999999999999999999999 58999999998876654433322110000 0 0122 35567789
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
+||+||.+... +..+.+++..++.++.+ +++++..|
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs 117 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS 117 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 99999999853 34456777777888776 55554434
No 233
>PRK10949 protease 4; Provisional
Probab=98.32 E-value=4e-06 Score=96.18 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=105.2
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (721)
Q Consensus 12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (721)
.+.|++|+++.. + .+.++. +.+.+.++++..|++||+|||+-. |.|+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH-------------HHH
Confidence 467999998653 1 233443 567888899999999999999754 22222111 011
Q ss_pred HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc------------ccCcccc---ccc----
Q 004972 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPG---TQR---- 146 (721)
Q Consensus 86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~------------~~Gl~P~---~~~---- 146 (721)
..+.+ ..++...||+||.+.|.|..||.-++++||.++|.+.+..|...+ ++|+-+. +..
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 335667899999999999999999999999999998777665332 1333221 000
Q ss_pred ------------------------------cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972 147 ------------------------------LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 192 (721)
Q Consensus 147 ------------------------------l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 192 (721)
-.|-+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 0122233332 33568999999999999999999875555544444
No 234
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.28 E-value=4.3e-06 Score=88.85 Aligned_cols=175 Identities=11% Similarity=-0.012 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||+|||+|.||+-+|..|+++|++|+++++..+.++...+. +.+. ....+... .-.+.. .+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~-------~~~~~~-~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS-------LYAIPA-ETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce-------eeccCC-CCccccccc
Confidence 479999999999999999999999999999988776654320 0000 00011000 000111 111334678
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEE-EecCCCCCCCCCe-e------EEe
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRII-GAHFFSPAHVMPL-L------EIV 456 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~i-g~h~~~p~~~~~l-v------Eiv 456 (721)
|+||.|+- .....+.++++.+++.+++.+++...++...+ +...+.. ++++ |..++......|. + .+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence 99999985 55556788899999999998888888877654 4444433 3333 3333221111111 0 111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972 457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 495 (721)
Q Consensus 457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~ 495 (721)
-|.. +.+..+.+.+++...|....+..|..+.+.+.++
T Consensus 149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 186 (305)
T PRK05708 149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLA 186 (305)
T ss_pred EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 1221 2233455666666666555555565555555554
No 235
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.26 E-value=1.2e-05 Score=81.33 Aligned_cols=196 Identities=19% Similarity=0.256 Sum_probs=124.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHH----HHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 378 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 378 (721)
|.||+-||+|++|++....++.. .++|+++|.+..++...... ++..++.-++ ...-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence 46999999999999988877654 46899999999988765422 1111111111 111135778888
Q ss_pred c-cccCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEe
Q 004972 379 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA 441 (721)
Q Consensus 379 ~-~~l~~aDlVIeavpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~~~~~r~ig~ 441 (721)
. ..++++|+|+.+|.. |+......-+.|.+....+.|++ ..|+.|+.. +...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 8 568999999999842 56677777778888888888876 456666542 2222322222 34
Q ss_pred cC------------------CCCCCCCCeeEEecCCCCCH--HHHHHHHHHHHHcC-CeeEEEc-----CCC-----chh
Q 004972 442 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVVG-----NCT-----GFA 490 (721)
Q Consensus 442 h~------------------~~p~~~~~lvEiv~~~~t~~--e~~~~~~~l~~~lG-~~~v~v~-----d~~-----gfi 490 (721)
|| +||-+. ++.|..|++ .+++.+..+++.+- +.-+... +.. .|+
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 43 455554 778877654 45666666666643 2223322 322 355
Q ss_pred hhhhhhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972 491 VNRAFFPYSQSARLLVSL-GVDVFRIDSAI 519 (721)
Q Consensus 491 ~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~ 519 (721)
+.|+ .-+|....++|. |.+++++-.++
T Consensus 224 aqri--ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRI--SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHH--hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 5555 346666677777 99999998886
No 236
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.26 E-value=3e-06 Score=89.83 Aligned_cols=101 Identities=24% Similarity=0.261 Sum_probs=69.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
.||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+..... . ...+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~---~----------~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL---K----------NPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC---C----------CCEEEECCCHHHhC
Confidence 499999999999999999999886 79999999876655433332211000 0 02456667888899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
+||+||.+.-. +..+.+++.+++.++.++ .+++..|
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vivvs 120 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPN-AILLVVS 120 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEcc
Confidence 99999986621 233556666778888654 4444333
No 237
>PRK15076 alpha-galactosidase; Provisional
Probab=98.26 E-value=3.7e-06 Score=93.00 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=55.8
Q ss_pred ceeEEEEcCCCCcHHHHH--HHH----HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972 305 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 378 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 378 (721)
|+||+|||+|.||.+.+. .++ ..|.+|+++|+++++++.+...+++.+... +. ..++..++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~~---------~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---GA---------SAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---CC---------CeEEEEECC
Confidence 369999999999976665 333 246699999999999886555444443322 10 135777888
Q ss_pred c-cccCCCCEEEEccc
Q 004972 379 Y-SEFKDVDMVIEAVI 393 (721)
Q Consensus 379 ~-~~l~~aDlVIeavp 393 (721)
. +++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 4 88999999999884
No 238
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.24 E-value=5.8e-06 Score=88.71 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=73.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|++||+++..... ...+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence 68999999999999999999999999999998643210 0001 111 233 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 433 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~ 433 (721)
||+|+.++|-+.+...-+-++....++++++++..+.+-. -..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 9999999998777766666777888999998875444433 334545443
No 239
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.20 E-value=2.3e-06 Score=90.94 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=67.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+||+|||+|.+|+++|..++..| .+|+++|++++.++.....+... ..... .....++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-------~~~i~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-------PVRIYAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-------CeEEeeCCHHHhC
Confidence 38999999999999999999999 58999999988765322211111 00000 0112246678899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEE
Q 004972 384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 416 (721)
Q Consensus 384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii 416 (721)
+||+||.+++. +..+.+++.+++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999974 3445667777888877554444
No 240
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.18 E-value=1.7e-05 Score=84.11 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=78.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|+.||++.+..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999875431100 000011233 56799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~ 444 (721)
||+|+.++|.+.+...-+-++....++++++++..+=+ +.-..+.+.+.. .-+..++.-|
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 99999999988887776667777888999988744433 334455555542 2233445533
No 241
>PLN02602 lactate dehydrogenase
Probab=98.18 E-value=4.8e-06 Score=89.34 Aligned_cols=101 Identities=26% Similarity=0.348 Sum_probs=68.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+... .. + . ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~---------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P---------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C---------C-CEEEeCCCHHHhC
Confidence 599999999999999999998886 799999998876554333332211 00 0 0 1344446788899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
+||+||.+.-. +..+.+++..++.+++++ ++++..|
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivivvt 154 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLIVS 154 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEec
Confidence 99999988521 334556667778887655 4444333
No 242
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.16 E-value=4.8e-06 Score=86.70 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||.++|..|...|++|+++++.....+.+. ..| .... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence 6899999999999999999999999999987643322211 111 2222 33 66899
Q ss_pred CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEE
Q 004972 385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILA 417 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~ 417 (721)
||+|+.++|. .+. +.++ .++.+.++++++++
T Consensus 72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence 9999999995 444 4555 56888899998775
No 243
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.15 E-value=1.4e-05 Score=84.38 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=87.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|+.||++... .+ . .....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~-~-----------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DG-I-----------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cC-c-----------ccccCCHHHHHhh
Confidence 68999999999999999888889999999987421 00 0 0001233 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCCC--CC---CCCCeeEEe
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEIV 456 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~~--p~---~~~~lvEiv 456 (721)
||+|+.++|.+.+...-+-++....++++++++..+.+ +....+.+.+.. .....++..|. |. +..+.+-++
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999988876665556677778999988754433 333455555542 23344444332 21 234667777
Q ss_pred cC-C-CCCHHHHHHH
Q 004972 457 RT-E-RTSAQVILDL 469 (721)
Q Consensus 457 ~~-~-~t~~e~~~~~ 469 (721)
|+ . .++++..+.+
T Consensus 254 PHi~g~~t~e~~~~~ 268 (303)
T PRK06436 254 PHVAGGMSGEIMQPA 268 (303)
T ss_pred CccccccCHHHHHHH
Confidence 77 2 2455544443
No 244
>PRK07574 formate dehydrogenase; Provisional
Probab=98.14 E-value=2e-05 Score=85.54 Aligned_cols=130 Identities=10% Similarity=0.001 Sum_probs=84.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|+.||++....+... . ..+....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------E-------------LGLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------h-------------cCceecCCHHHHhhc
Confidence 5799999999999999999999999999999763211100 0 012222344 56799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL 453 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv 453 (721)
||+|+.++|.+.+...-+=++....++++++|+..+.+-.+ ..+.+.+. ..-+..++.-|. |-+.++.+
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv 328 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRN 328 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCe
Confidence 99999999988877665556677888999988754444333 35545543 222333444322 22445566
Q ss_pred EEecCC
Q 004972 454 EIVRTE 459 (721)
Q Consensus 454 Eiv~~~ 459 (721)
-++|+-
T Consensus 329 ilTPHi 334 (385)
T PRK07574 329 GMTPHI 334 (385)
T ss_pred EECCcc
Confidence 676653
No 245
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.14 E-value=1.1e-05 Score=76.31 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=73.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCC
Q 004972 308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVD 386 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aD 386 (721)
|+|+|+|.||.-+|..|++.|++|+++++.+ .++...+. ...+.... -+..........+. +....+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-----g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-----GLTITGPD-----GDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-----CEEEEETT-----EEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-----eEEEEecc-----cceecccccccCcchhccCCCc
Confidence 7899999999999999999999999999998 65553211 00000000 00000000111111 2457899
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH-hccc
Q 004972 387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV-GEKT 432 (721)
Q Consensus 387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l-~~~~ 432 (721)
+||.|+. .....++++.+.+++.+++.|++...++...+. .+..
T Consensus 70 ~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 70 LVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp EEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred EEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 9999996 666677889999999999888887888776544 4444
No 246
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.14 E-value=5.1e-06 Score=87.90 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=70.5
Q ss_pred EEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 308 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
|+|||+|.+|+++|..++..| .+++++|++++.++.....+.+....+ . ..++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988776544443322110 0 0134445667899999
Q ss_pred CEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 386 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 386 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
|+||.++.. +..+.+++..++.+++ ++++++..|
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 999998852 3445667777888887 555554434
No 247
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.13 E-value=5.1e-06 Score=88.33 Aligned_cols=100 Identities=23% Similarity=0.278 Sum_probs=68.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+||+|||+|.+|+++|..++..|+ +++++|++++.++.....+.+..... . . -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999888766544443322110 0 0 1233 45678899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
+||+||.+.-. +..+.+++..++.++.+ +++++..|
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvs 122 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVAS 122 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence 99999987631 33455666667777665 45554333
No 248
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.12 E-value=6.6e-06 Score=76.77 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=63.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++. +.| ....+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999998876 433332 222 333333377899
Q ss_pred CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCH
Q 004972 385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 425 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i 425 (721)
||+|+..+| -+.-.+++ ++|.+.++++..+.- +.++.+
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 999999999 55556777 789999999998753 445444
No 249
>PLN03139 formate dehydrogenase; Provisional
Probab=98.12 E-value=1.9e-05 Score=85.62 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=86.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|.+|..||++....+... .. .+...+++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ET-------------GAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hc-------------CceecCCHHHHHhh
Confidence 5899999999999999999999999999998753211100 00 12223345 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL 453 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv 453 (721)
||+|+.++|.+.+.+.-+-+++...++++++|+..+-+-.+ ..+.+.+. ..-...++.-|. |-+.++.+
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv 335 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH 335 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence 99999999988877766657788889999988754444333 35555543 222334444332 22455666
Q ss_pred EEecCC
Q 004972 454 EIVRTE 459 (721)
Q Consensus 454 Eiv~~~ 459 (721)
-++|+-
T Consensus 336 ilTPHi 341 (386)
T PLN03139 336 AMTPHI 341 (386)
T ss_pred EEcccc
Confidence 677754
No 250
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.06 E-value=9.7e-06 Score=78.39 Aligned_cols=132 Identities=21% Similarity=0.204 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (721)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G 107 (721)
++.+...++...+..+..++..+.|+|.=. |.|+|+.. ...++ +.|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~----------------~~~i~-~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTA----------------GLAIY-DTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCCCEEEEEEe
Confidence 677888999999999998766555555311 22333221 12344 5567789999999999
Q ss_pred cccccchHhhhhcC--EEEeeCCceEeCcccccCccccc------------------cccccc--cCHHHHHHHHHcCCC
Q 004972 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGT------------------QRLPRL--VGLSKAIEMMLLSKS 165 (721)
Q Consensus 108 ~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~~------------------~~l~r~--~G~~~a~~l~ltg~~ 165 (721)
.|.++|.-++++|| .|++.+++.|.+.+...+..-.. ..+... .......+++..+..
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 156 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY 156 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence 99999999999999 89999999999987765532210 011111 234455677778899
Q ss_pred cCHHHHHHcCCccEE
Q 004972 166 ITSEEGWKLGLIDAV 180 (721)
Q Consensus 166 ~~a~eA~~~Glv~~v 180 (721)
++|+||+++|+||+|
T Consensus 157 lta~EA~e~GiiD~V 171 (171)
T cd07017 157 MSAEEAKEYGLIDKI 171 (171)
T ss_pred ccHHHHHHcCCCccC
Confidence 999999999999975
No 251
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.05 E-value=1e-05 Score=83.27 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHC--CC-----ceEEEeCCHHHHHHHHHHHHHHHHhhhhc-CCCCHHHHHHhhcCce
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLK 374 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~ 374 (721)
+...||+|||+|+||++||..+.++ ++ +|..|-..++.-.. ...+.+.+....+. ..+.. -....++.
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVV 94 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeE
Confidence 3447899999999999999998765 22 68888765544332 11111111111111 01110 11224677
Q ss_pred eccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972 375 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 425 (721)
Q Consensus 375 ~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i 425 (721)
+++|+ +++.+||++|-+|| .+....++.+|..++++++..+|.+.++..
T Consensus 95 Av~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred ecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 78888 77899999999999 999999999999999999999987776553
No 252
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.04 E-value=6.8e-06 Score=88.19 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=68.5
Q ss_pred eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||+|.||.++|..++ ..|.+|+.||+++...... .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence 48999999999999999995 4588999999886532100 01123344 5578
Q ss_pred CCCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCH--HHHhccc
Q 004972 384 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 432 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~ 432 (721)
+||+|+.++|....... ++ .++.+.++++++|+..+.+..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999997666543 33 4566778999988765555443 3444444
No 253
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.03 E-value=1.3e-05 Score=84.88 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=66.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+....... . --++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~-~----------~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYS-T----------NTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCC-C----------CEEEE-ECCHHHhCC
Confidence 79999999999999999999887 7999999988765433322221110000 0 01233 457899999
Q ss_pred CCEEEEcccC------C----------hHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe------~----------~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
||+||.+.-. + ..+.+++..++.++. ++++++..|..
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNP 121 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNP 121 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 9999987731 1 234455556677776 45555544433
No 254
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.03 E-value=3.4e-05 Score=76.42 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia 103 (721)
..++.++.+.+...+..++.++..+.|.| .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 44778899999999998886544443444 3333 3322 122444 557778899999
Q ss_pred EECCcccccchHhhhhc--CEEEeeCCceEeCcccccCcccc-c------------------ccccccc--CHHHHHHHH
Q 004972 104 AVEGLALGGGLELAMGC--HARIAAPKTQLGLPELTLGVIPG-T------------------QRLPRLV--GLSKAIEMM 160 (721)
Q Consensus 104 av~G~a~GgG~~lalac--D~ria~~~a~~~~pe~~~Gl~P~-~------------------~~l~r~~--G~~~a~~l~ 160 (721)
.+.|.|.+.|..+++++ +.|++.+++++++....-|. -| . ..+...- ......+++
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 173 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF-QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT 173 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 99999999999999975 47899999998886554222 22 0 1122222 345556777
Q ss_pred HcCCCcCHHHHHHcCCccEEcCC
Q 004972 161 LLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 161 ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-.+..++|+||++.||||+|+..
T Consensus 174 ~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 174 DRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hCCccccHHHHHHcCCccEEeec
Confidence 77889999999999999999854
No 255
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.02 E-value=1.2e-05 Score=84.04 Aligned_cols=104 Identities=26% Similarity=0.332 Sum_probs=68.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
+||+|||+|.+|+++|..|...+. +++++|++++.++.-...+.+...... ....+..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~------------~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG------------SDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc------------CceEEecCCChhhhc
Confidence 489999999999999999977754 899999996654432211111100000 001233334488999
Q ss_pred CCCEEEEcc--c------------CChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 384 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 384 ~aDlVIeav--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+||+||.+. | .|..+.+++.+++.++++ +.+++..|..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNP 120 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNP 120 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCc
Confidence 999999887 3 255677777788888877 5555444443
No 256
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.00 E-value=8.3e-06 Score=77.47 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|+|+|+|.||.+++..++..| .+|+++|++++..+...+.+.. .. + .....+..+.+++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 58999999999999999999986 7899999999887664322110 00 0 0111222244789
Q ss_pred CCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEEec
Q 004972 385 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAH 442 (721)
Q Consensus 385 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~-~~~r~ig~h 442 (721)
+|+||.|+|.+.. .....+. ...+++++++++.++....+.+.+... ...+++..|
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 9999999996653 1111111 123577888876555433234433332 223444444
No 257
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.00 E-value=2.8e-05 Score=77.37 Aligned_cols=137 Identities=22% Similarity=0.236 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
..++..+..++...|..++.++..+.|.|.=. |.|+++.. ...++ +.|..++.|+++.+
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~~I~-d~i~~~~~~v~t~~ 100 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA----------------GDAIY-DTIQFIRPDVQTVC 100 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH----------------HHHHH-HHHHhcCCCcEEEE
Confidence 45789999999999999987654444444211 23333321 12444 66778889999999
Q ss_pred CCcccccchHhhhhcC--EEEeeCCceEeCccccc-Ccccc--c-----------------ccccccc--CHHHHHHHHH
Q 004972 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPG--T-----------------QRLPRLV--GLSKAIEMML 161 (721)
Q Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~-Gl~P~--~-----------------~~l~r~~--G~~~a~~l~l 161 (721)
.|.|.+.|.-++++|| .|++.+++.|.+..... |..-| + ..+.+.- ......+++-
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~ 180 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTD 180 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999 69999999999877643 22112 0 1122222 3455667777
Q ss_pred cCCCcCHHHHHHcCCccEEcCC
Q 004972 162 LSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~ 183 (721)
.+..++|+||+++||||+|+..
T Consensus 181 ~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 181 RDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred cCccccHHHHHHcCCccEEcCc
Confidence 8899999999999999999854
No 258
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.98 E-value=1.3e-05 Score=85.18 Aligned_cols=123 Identities=22% Similarity=0.234 Sum_probs=77.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 380 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 380 (721)
+||+|+|+ |..|..++..++..|+ +|+++|+++ +.++.....+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 499999965 33332221111 11111110 01466666788
Q ss_pred ccCCCCEEEEcccC------C--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhcccC-CCCcEEEe
Q 004972 381 EFKDVDMVIEAVIE------S--------VPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTS-SQDRIIGA 441 (721)
Q Consensus 381 ~l~~aDlVIeavpe------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~--l~~~~~-~~~r~ig~ 441 (721)
++++||+||.++.- + ..+.+++...+.++++ +.+++..++..++.. +..... .+.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 89999999999841 1 1446666677777765 566666666655432 222233 23566664
No 259
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00013 Score=74.91 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 383 (721)
.+|||||.|.||.-+|..+.++|+.|...||++ -+.+.+++ +.-. .+++ -+-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHhc
Confidence 579999999999999999999999999999987 22222211 1111 1222 1236
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC-C------CCee
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------MPLL 453 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~-~------~~lv 453 (721)
..|+|+.|+. .....++++..-.. ++-++|++..+|... .+...+.++..-.++..|++..|. . .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999996 66666676665444 667899998777543 344455666666789999965553 1 1343
Q ss_pred EEe-c-C-CCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972 454 EIV-R-T-ERTSAQVILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 454 Eiv-~-~-~~t~~e~~~~~~~l~~~lG~~~v~v 483 (721)
-+- + + ....+|-.+.+.+++...|...|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 321 1 1 2235899999999999999998877
No 260
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.95 E-value=5e-05 Score=75.60 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
++|++||+|.|..+++..+.+.|. .++.+-.+......- ... ++.-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence 379999999999999999999986 344444322211110 001 122233444677
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 460 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~ 460 (721)
++.+|++++++- +.....++.++...+..+.|++|..-+.+++.+...+..+.|++...++.|..+.....+. .+.+
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999996 7777888888777667778999999999999999988888899999999999998888854 5777
Q ss_pred CCHHHHHHHHHHHHHcCCee
Q 004972 461 TSAQVILDLMTVGKIIKKVP 480 (721)
Q Consensus 461 t~~e~~~~~~~l~~~lG~~~ 480 (721)
...+..+.+..++...|.-.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 88888899999999999644
No 261
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.93 E-value=5e-05 Score=86.58 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=83.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|+.||+.... +... +. .+...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QL-------------GVELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1110 00 12223344 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC--CC-----CCCCCeeE
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 454 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~--~p-----~~~~~lvE 454 (721)
||+|+.++|.+.+.+.-+=++....++++++++..+-+ +.-..+.+.+.. .-...++..| .| -+..+.|-
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 99999999977766554435566678999988754444 333455555542 2233444433 22 33445566
Q ss_pred EecCCC
Q 004972 455 IVRTER 460 (721)
Q Consensus 455 iv~~~~ 460 (721)
++|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 777544
No 262
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.88 E-value=0.00012 Score=77.25 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=99.1
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (721)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (721)
.+.|++|.++.+ ..+ -...+.+++...+.....+ .+|||.-. |.|+..... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-------------HHHHHHH
Confidence 367999999876 211 1123456666666555433 46777643 223322211 0011113
Q ss_pred HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------ccc-
Q 004972 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG-----------TQR- 146 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~-----------~~~- 146 (721)
..+....||+++.+++.|..||.-+|++||.+++.+.+.+|...+- +|+-+. +.+
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 3467788999999999999999999999999999999888765443 233110 000
Q ss_pred ---------ccc-----------cc--CH-HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972 147 ---------LPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 192 (721)
Q Consensus 147 ---------l~r-----------~~--G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 192 (721)
+.. .| ++ ....+-+.+|+.+++++|++.||||++...+++...+..
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 000 00 00 112345668999999999999999999987777554443
No 263
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.88 E-value=8e-05 Score=79.17 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=83.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC-CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|||||+|.+|+.+|..+..-|++|+.||+ .+...... .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 5899999999999999999999999999999 33321110 012223445 5579
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEecCCC--------CCCCCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFFS--------PAHVMP 451 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~~-~~r~ig~h~~~--------p~~~~~ 451 (721)
.||+|+..+|...+.+.-+=++....++++++++ |++ + +.-..+.+.+.. .-+-.++..|. |-+..+
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p 275 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP 275 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence 9999999999888765555566667789999776 555 3 333455555542 22333444432 334445
Q ss_pred eeEEecCC
Q 004972 452 LLEIVRTE 459 (721)
Q Consensus 452 lvEiv~~~ 459 (721)
.|-++|+-
T Consensus 276 nV~~TPHi 283 (324)
T COG0111 276 NVILTPHI 283 (324)
T ss_pred CeEECCcc
Confidence 56666643
No 264
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.85 E-value=1.6e-05 Score=77.74 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=94.1
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
|.|+.| ++.++...+.+.|..++.++..+ .+.|.+. |+|+.. ...++ +.|.
T Consensus 19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~ 71 (182)
T PF00574_consen 19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIR 71 (182)
T ss_dssp EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHH
T ss_pred EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHH
Confidence 444444 78899999999988885333222 2333443 444322 22445 6688
Q ss_pred hCCCcEEEEECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-------c-----------cccccc--cCH
Q 004972 96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-------T-----------QRLPRL--VGL 153 (721)
Q Consensus 96 ~~~~p~Iaav~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-------~-----------~~l~r~--~G~ 153 (721)
.++.|++..+.|.|.+.|.-++++||. |++.+++.|.+.+...+.... . ..+... ...
T Consensus 72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~ 151 (182)
T PF00574_consen 72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSK 151 (182)
T ss_dssp HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-H
T ss_pred hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 899999999999999999999999999 899999999998886554331 0 111112 233
Q ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972 154 SKAIEMMLLSKSITSEEGWKLGLIDAVVT 182 (721)
Q Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 182 (721)
....+++-...-++|+||+++|+||+|+.
T Consensus 152 ~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 152 EEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 44456666667789999999999999975
No 265
>PRK05442 malate dehydrogenase; Provisional
Probab=97.82 E-value=3.1e-05 Score=82.47 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=69.0
Q ss_pred ceeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHH--HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972 305 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 374 (721)
Q Consensus 305 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 374 (721)
..||+|||+ |.+|+++|..++..|. +++++|++++ .++.....+.+... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 459999998 9999999999988765 7999999643 23322111111110 0011122
Q ss_pred e-ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972 375 G-VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID 424 (721)
Q Consensus 375 ~-~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 424 (721)
. +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|....
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 2 456689999999997762 1344667777788888877787766554443
No 266
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.82 E-value=8.9e-05 Score=73.07 Aligned_cols=140 Identities=20% Similarity=0.175 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~ 106 (721)
.++.++...+.+.|..++..+..+.|.|.=. |.|+++.. ...++ +.|...+.||++.+.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a----------------g~aI~-d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA----------------GFAIF-NMIRFVKPKVFTIGV 89 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH----------------HHHHH-HHHHhCCCCEEEEEE
Confidence 4778889999999988876333344444211 23333321 12445 667789999999999
Q ss_pred CcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-c-----------------ccccccc--CHHHHHHHHHcCC
Q 004972 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLV--GLSKAIEMMLLSK 164 (721)
Q Consensus 107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~--G~~~a~~l~ltg~ 164 (721)
|.|.+.|.-++++||- |++.++++|.+....-++... + ..+...- ......+++-...
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~ 169 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF 169 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence 9999999999999985 999999998765543332111 1 0111122 2344556666778
Q ss_pred CcCHHHHHHcCCccEEcCC-chHH
Q 004972 165 SITSEEGWKLGLIDAVVTS-EELL 187 (721)
Q Consensus 165 ~~~a~eA~~~Glv~~vv~~-~~l~ 187 (721)
.++|+||+++||||+|++. +++.
T Consensus 170 ~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred ccCHHHHHHcCCccEeecCcHHhH
Confidence 8999999999999999964 4443
No 267
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.81 E-value=5.1e-05 Score=80.77 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=69.2
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 375 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 375 (721)
-||+|||+ |.+|+++|..+...|+ +++++|+++ +.++.-...+.+.... .......
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP--------------LLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccc--------------ccCCcEE
Confidence 48999998 9999999999998885 799999965 3233222111111000 0011122
Q ss_pred -ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 376 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 376 -~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
+.+++++++||+||.+.- .+..+.+++..++.++.+++++++..|...
T Consensus 70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 456789999999997762 134567777888889888677776655443
No 268
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.80 E-value=0.00015 Score=71.40 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia 103 (721)
..++.++..++...+..++.++..+-+.+ .+.| +|+.. ...++ +.+...+.|+..
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~T 93 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS----------------GLAIY-DTMQFVKPDVHT 93 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence 34899999999999999886544344443 4443 33211 12455 667889999999
Q ss_pred EECCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc--c-----------------ccccccc--CHHHHHHHH
Q 004972 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLV--GLSKAIEMM 160 (721)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~--G~~~a~~l~ 160 (721)
.+-|.|.+.|.-|++++| .|++.++++|.+.....|..-| + ..+...- ......+++
T Consensus 94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~ 173 (200)
T CHL00028 94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM 173 (200)
T ss_pred EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999999 6999999999987765552222 0 1111122 234445666
Q ss_pred HcCCCcCHHHHHHcCCccEEcCC
Q 004972 161 LLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 161 ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-....++|+||+++||||+|+.+
T Consensus 174 ~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 174 ERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred hcCccCCHHHHHHcCCCcEEeec
Confidence 77778999999999999999854
No 269
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.79 E-value=2e-05 Score=76.85 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=74.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.+|..+|..+..-|.+|+.||++........ . .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence 6899999999999999999999999999999987643110 0 0122 2344 55788
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~ 444 (721)
||+|+.++|-+.+...-+=++....++++++|+..+-+ +.-..+.+.+.. +-...++..|
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 99999999976665444445666778999988754444 333455555542 2233444443
No 270
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.79 E-value=0.00012 Score=83.64 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|++|+.||++... +... ..+ +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 58999999999999999999999999999986432 1110 001 2222 34 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC--CC-----CCCCCeeE
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 454 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~--~p-----~~~~~lvE 454 (721)
||+|+.++|-+.+.+.-+-.+....++++++++..+-+ +.-..+.+.+.. .-...++..| .| -+..+.|-
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 99999999977776554446677788999988754444 333455555532 2233444433 22 33445566
Q ss_pred EecCCC
Q 004972 455 IVRTER 460 (721)
Q Consensus 455 iv~~~~ 460 (721)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 777544
No 271
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.77 E-value=0.0016 Score=70.84 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=107.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceE------EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
++|+|||.|.+|.+.|..+...|++|+ .+|.+.+.-+.+. +.| ....+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 689999999999999999999999988 4444443433321 112 2222223
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC----------C
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH----------V 449 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~----------~ 449 (721)
++++.||+|+..+|+. ....+++++.+.+++++.+.- +-+..+....-..+..-.++-+-|-.|-+ -
T Consensus 93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6689999999999966 367788999999999998853 33333332211111122344333432221 1
Q ss_pred CCeeEEec-CCCCCHHHHHHHHHHHHHcCCe---eEEE--cC--CCchhhhh-hhhHHH---HH--HHHHHHcCCCHHHH
Q 004972 450 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVV--GN--CTGFAVNR-AFFPYS---QS--ARLLVSLGVDVFRI 515 (721)
Q Consensus 450 ~~lvEiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d--~~gfi~nR-l~~~~~---~E--a~~l~~~Gv~~~~I 515 (721)
.|.+-.|- -...+..+.+.+..+...+|.. ++.. .+ ..-....| +++..+ .+ --.++++|++|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 12222222 1345667889999999999976 2221 11 11122233 233333 12 23577889988875
Q ss_pred HH
Q 004972 516 DS 517 (721)
Q Consensus 516 D~ 517 (721)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 44
No 272
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.76 E-value=0.0001 Score=81.03 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=73.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHC-------CC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-
Q 004972 306 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 374 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 374 (721)
-||+|||+ |.+|.++|..++.. |+ +++++|++++.++.-.-.+.+....+ +..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence 58999999 99999999999988 66 89999999998776544333322111 11233
Q ss_pred eccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 375 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 375 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
.+.+++++++||+||.+.-- +..+.+++..+|.++..++++++..+...
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 24667999999999987621 34456667777777666777776655443
No 273
>PLN02928 oxidoreductase family protein
Probab=97.75 E-value=0.00013 Score=78.65 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=83.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.||..+|..+...|.+|+.||++........ +. ...... ...........++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~~-----~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGDV-----DDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--cccccc-----cccccccCcccCHHHHHhh
Confidence 5899999999999999999999999999999743211100 00 000000 0000000012234 56799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCCC--------CCCCCCee
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--------PAHVMPLL 453 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~~--------p~~~~~lv 453 (721)
||+|+.++|-+.+...-+=++....++++++|+..+-+ +.-..+.+.+.. .-...++..|. |.+..+.+
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv 306 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV 306 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence 99999999987776554446677778999988754444 333455555542 22334445442 22334556
Q ss_pred EEecCC
Q 004972 454 EIVRTE 459 (721)
Q Consensus 454 Eiv~~~ 459 (721)
-++|+-
T Consensus 307 iiTPHi 312 (347)
T PLN02928 307 IITPHV 312 (347)
T ss_pred EECCcC
Confidence 666653
No 274
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00025 Score=75.40 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=102.9
Q ss_pred cEEEEEeCCCC---CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972 14 GVAIITLINPP---VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (721)
Q Consensus 14 ~v~~i~l~~p~---~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (721)
.|++|.++.+= .+.+..--.+.+.+.++.+..++++++|||.=. |.|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 58888886651 122212235677778888899999999999632 22332211 01122333
Q ss_pred HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc------------------------cc-
Q 004972 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG------------------------TQ- 145 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~------------------------~~- 145 (721)
+.+..-. ||++.|++.|..||.-+|++||.+||++++..|--.+..+. |. +.
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999988876554432 21 00
Q ss_pred -ccc------------------------cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHH
Q 004972 146 -RLP------------------------RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 193 (721)
Q Consensus 146 -~l~------------------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 193 (721)
-++ .+-.......-+.+|+.+++++|++.||||++...++....+...
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 000 011122223466799999999999999999998665554444443
No 275
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.67 E-value=7e-05 Score=79.80 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=67.3
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 375 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 375 (721)
.||+|||+ |.+|+++|..++..|. +++++|++++. ++.-...+.+... .....+..
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence 59999999 9999999999998886 79999996432 2221111111000 00111222
Q ss_pred -ccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 376 -VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 376 -~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+.+++++++||+||.+.-- +..+.+++..++.++.+++++++..|..
T Consensus 69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 4566899999999987621 3446777777888888667766655543
No 276
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.66 E-value=0.00013 Score=77.16 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=65.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-c-C--
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 378 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 378 (721)
+||+|||+ |.+|+++|..++..|+ +++++|++ .++.-.-.+. ... ..-.+..+ . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence 38999999 9999999999998885 89999998 2221110111 110 00134432 2 2
Q ss_pred ccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 379 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 379 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
++++++||+||.+.- .|..+.+++..++.++. ++++++..|...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 689999999998762 14456667777788875 566666555444
No 277
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.66 E-value=0.00011 Score=77.78 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=65.0
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-c-cC--c
Q 004972 307 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 379 (721)
Q Consensus 307 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 379 (721)
||+|||+ |.+|+++|..++..++ +++++|+++ ....+.+ + .... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998886 899999987 2111110 0 1110 0013443 2 23 6
Q ss_pred cccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 380 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 380 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
+++++||+||.+.- .+..+.+++..++.++. ++++++..|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 89999999997763 24556677777788875 566665545444
No 278
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.64 E-value=0.0004 Score=68.22 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~ 106 (721)
.++..+...+...+..++.++..+-|.+.=. |.|+|+. ....++ +.+...+.|+...+-
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence 3667788888888888886654444444211 2234332 122444 556777778888888
Q ss_pred CcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc-c-----------------ccccccc--CHHHHHHHHHcCC
Q 004972 107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLV--GLSKAIEMMLLSK 164 (721)
Q Consensus 107 G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~--G~~~a~~l~ltg~ 164 (721)
|.|.+.|.-+++++| .|++.+++.|.+.+..-|.... + ..+.+.- ......+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999998888665 6999999999997664332211 0 1122232 3455667777888
Q ss_pred CcCHHHHHHcCCccEEcC
Q 004972 165 SITSEEGWKLGLIDAVVT 182 (721)
Q Consensus 165 ~~~a~eA~~~Glv~~vv~ 182 (721)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
No 279
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.64 E-value=0.00027 Score=76.63 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=70.3
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEE--eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 374 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 374 (721)
-||+|||+ |.+|+++|..++..|+ .++++ |++++.++.-.-.+.+.... .+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence 48999999 9999999999998875 24445 88888766543333322111 112233
Q ss_pred eccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 375 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 375 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
.+.+++++++||+||.+.-- +..+.+++...|.++.+++++++..|...
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 24567899999999986621 34466677777888887888776655433
No 280
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00011 Score=76.36 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.0
Q ss_pred eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 589999996 9999999999999999999986543211 33578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998554433322 78999988755
No 281
>PLN00106 malate dehydrogenase
Probab=97.59 E-value=0.00018 Score=76.38 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=71.3
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccC---
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 378 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 378 (721)
.||+|||+ |.+|+.+|..++..++ +++++|+++.. ..+. .+.+ . .. .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~-Dl~~--------~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAA-DVSH--------I-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEc-hhhh--------C-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 89999998711 1010 0000 0 00 012322 223
Q ss_pred ccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCC-----HHH-HhcccC-CCCc
Q 004972 379 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-----LNI-VGEKTS-SQDR 437 (721)
Q Consensus 379 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----i~~-l~~~~~-~~~r 437 (721)
++++++||+||.+.- .+..+.+++.+.+.++. ++.+++..|.... ++. +..... .|.+
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~ 159 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKK 159 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence 478999999997762 24556677777788776 5555554444443 232 223332 3556
Q ss_pred EEEe
Q 004972 438 IIGA 441 (721)
Q Consensus 438 ~ig~ 441 (721)
++|+
T Consensus 160 viG~ 163 (323)
T PLN00106 160 LFGV 163 (323)
T ss_pred EEEE
Confidence 6664
No 282
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.58 E-value=0.00038 Score=76.76 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.+|..+|..+..-|.+|+.||+++... . .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 0 011222344 55799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 433 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~ 433 (721)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ +.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 99999999977765554446667778999988743333 33345555554
No 283
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.57 E-value=0.00013 Score=76.57 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=61.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||+|.||.++|..|...|.+|++++++++..+.+. +.+. . .+. .+++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654421 1110 0 011 1122 45689
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
+|+||.++|...- -.+..+.+++++++++.+|
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984321 1234455677887776555
No 284
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.56 E-value=0.00042 Score=73.69 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=75.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.+|..+|..+..-|.+|..||+..... ..+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence 689999999999999999998899999999863210 000 11 1234 55799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~ 444 (721)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ +.-..+.+.+.. .-. .++..|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 99999999977776555556677778999988743333 344456565543 223 555554
No 285
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.56 E-value=8e-05 Score=78.60 Aligned_cols=98 Identities=28% Similarity=0.330 Sum_probs=65.0
Q ss_pred EEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972 310 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 387 (721)
Q Consensus 310 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 387 (721)
|||+|.+|+++|..++..++ +++++|++++.++.....+.+........ ..+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~------------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTP------------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCC------------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999877655433333221100000 1233 356789999999
Q ss_pred EEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 388 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 388 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
||.+.-. +..+.+++..++.++. ++++++..|.
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsN 114 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATN 114 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 9987632 3445666777787774 5565554443
No 286
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.56 E-value=0.00035 Score=72.77 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHC--CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
|...||||||+|.||..++..+.+. +++|+ ++|+++++.+...+. .+.....+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~ 61 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPL 61 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCH
Confidence 3457899999999999999999873 77776 899998875543210 0111123344
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHH
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSEL 406 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l 406 (721)
+.+.++|+|++|.|.+. -.++..+.
T Consensus 62 eell~~~D~Vvi~tp~~~--h~e~~~~a 87 (271)
T PRK13302 62 DQLATHADIVVEAAPASV--LRAIVEPV 87 (271)
T ss_pred HHHhcCCCEEEECCCcHH--HHHHHHHH
Confidence 34578999999999543 34444443
No 287
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.53 E-value=0.0015 Score=68.94 Aligned_cols=165 Identities=12% Similarity=0.014 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCC-CCHHHHHHhhcCceeccCccccCCCCEEEEccc
Q 004972 315 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 393 (721)
Q Consensus 315 ~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp 393 (721)
.||+.+|..|+++|++|++++++ +..+...+ .|. +....-......+..+++.+.+.++|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 38999999999999999999997 44444321 110 000000000002333455555778999999998
Q ss_pred CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEec-CCCCCCCCCe-eE-------EecCCCCCH
Q 004972 394 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAH-FFSPAHVMPL-LE-------IVRTERTSA 463 (721)
Q Consensus 394 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig~h-~~~p~~~~~l-vE-------iv~~~~t~~ 463 (721)
.....++++.+.+++.++++|++...++...+ +...++ +.++++.- ++......|. ++ .+.....+.
T Consensus 69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~ 145 (293)
T TIGR00745 69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN 145 (293)
T ss_pred --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence 44567888999999999898888777776544 444443 23444322 1111111111 11 111111122
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004972 464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 494 (721)
Q Consensus 464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl 494 (721)
+..+.+...++..|.......|.-+.+...+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl 176 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKL 176 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHH
Confidence 5566777777777766666666544444443
No 288
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.53 E-value=0.00081 Score=65.02 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=48.5
Q ss_pred eEEEEcCCCCcHHHHH--HHHHC----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972 307 KVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 379 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 379 (721)
||+|||+|..-.+.-. .+... +-+|+++|+|+++++....-.+... +....+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 7999999999777443 22222 3389999999999887654433332 221111 246778888
Q ss_pred cccCCCCEEEEccc
Q 004972 380 SEFKDVDMVIEAVI 393 (721)
Q Consensus 380 ~~l~~aDlVIeavp 393 (721)
+++++||+||.++-
T Consensus 69 eAl~gADfVi~~ir 82 (183)
T PF02056_consen 69 EALEGADFVINQIR 82 (183)
T ss_dssp HHHTTESEEEE---
T ss_pred HHhCCCCEEEEEee
Confidence 77999999997763
No 289
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.51 E-value=0.00062 Score=67.87 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia 103 (721)
..++..+...+...|..++..+.-+-+ .|.+.|+...+| ..++ +.+...+.||..
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG----------------------laIy-d~m~~~~~~V~t 117 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG----------------------LGIY-DTMQFISSDVAT 117 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH----------------------HHHH-HHHHhcCCCEEE
Confidence 447788888888877777643322222 224444322221 2445 667888999999
Q ss_pred EECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-c-----------------cccccccC--HHHHHHHHH
Q 004972 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLVG--LSKAIEMML 161 (721)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~G--~~~a~~l~l 161 (721)
.+-|.|.+.|.-|++++|. |++.+++++.+....-|...- + ..+.+.-| .....+++-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999996 999999999887765333211 1 11122223 344556677
Q ss_pred cCCCcCHHHHHHcCCccEEcCC
Q 004972 162 LSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~ 183 (721)
....++|+||+++||||+|+..
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 7788999999999999999853
No 290
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.50 E-value=0.00028 Score=66.48 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=61.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+++.|+|.|..|.++|+.|...|..|+++|++|-++-++. . +.....+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~-------------dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------M-------------DGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------H-------------TT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------h-------------cCcEecCHHHHHhhC
Confidence 5799999999999999999999999999999997654432 1 122323222678999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhcc
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 431 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~i~~l~~~ 431 (721)
|++|.+.-...-+..+-|+ .+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence 9999888654444444444 46899999865552 445555443
No 291
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.49 E-value=0.00013 Score=77.66 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=65.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-
Q 004972 307 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 375 (721)
Q Consensus 307 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 375 (721)
||+|||+ |.+|+.+|..++..|+ +++++|+++ +.++.....+.+... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 8999999 9999999999998764 499999987 543221111111000 00111122
Q ss_pred ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 376 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 376 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+.+++++++||+||.+.- .+..+.+++..++.++++++.+++..|..
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 345688999999997662 14556777778888887566766655543
No 292
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.47 E-value=0.0008 Score=71.84 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=70.3
Q ss_pred eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|||||.|.+|..+|..+. .-|.+|..||+........ .. .+... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~-------------~~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RF-------------NARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hc-------------CcEec-CHHHHHH
Confidence 68999999999999999987 6789999999864221000 00 11222 34 5579
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 433 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~ 433 (721)
+||+|+.++|-+.+...-+=++....++++++++..+=+ +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999987776555546677778999988743323 33445555554
No 293
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.47 E-value=0.00074 Score=71.87 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.+|..+|..+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 58999999999999999998889999999975321 0 0000 1233 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~ 444 (721)
||+|+.++|-+.+...-+=++....++++++|+..+-+ +.-..+.+.+.. .-.-.++..|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 99999999977775544446677778999988743333 444566555542 2233445444
No 294
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.47 E-value=0.00048 Score=71.58 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=57.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC--CCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. . .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence 5899999999999999999876 455 55899998876653210 0 12234455 33
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEE
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 416 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii 416 (721)
+.++|+|++|+| .....++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence 488999999998 55555665555442 344444
No 295
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.45 E-value=0.003 Score=64.66 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
-.++++-.+...+.++.+.+.. +-+|-|.=.++++. |.+-.+ .-......+.+ ..+...++|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE~----------~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAEE----------RGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 5677888888888888887543 44444433333332 332110 01122333444 44678899999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.|.|||......||++++.+++.++. ||....+ .+...--...+.+.+ .+++.++.+.|+||+|+|+
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~i-----l~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASI-----LWKDGSRATEAAELM----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHH-----HhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence 9999999888888999999999988875 3322221 111111112223333 7799999999999999964
No 296
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.45 E-value=0.00056 Score=72.95 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=69.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.+|..+|..+..-|.+|+.||+.... .. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence 58999999999999999999889999999986321 00 00 1133 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 433 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~ 433 (721)
||+|+.++|-+.+...-+=++....++++++|+..+-+ +.-..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999977776555556677788999988743333 33345555554
No 297
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.43 E-value=0.00068 Score=67.79 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=72.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 382 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 382 (721)
..||.|||.|..|.+.|..+..+|. +++++|.++++++...-.++ .|. +--...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLq--------H~s-----~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQ--------HGS-----AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhc--------ccc-----ccccCCceEecCccccc
Confidence 5799999999999999999998887 89999999998765322211 110 00011457777889888
Q ss_pred CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972 383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL 425 (721)
Q Consensus 383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i 425 (721)
+++++||...-- +.++.+.++.++.++ +|+++++..+....+
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDi 142 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDI 142 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHH
Confidence 999999977631 334445555556555 566666544444443
No 298
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.43 E-value=0.00013 Score=79.26 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=71.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.||+.+|..+...|++|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 5899999999999999999999999999997543210 0 011 1234 45689
Q ss_pred CCEEEEcccCChH---HHHHHH-HHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEecCC
Q 004972 385 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~h~~ 444 (721)
||+|+.++|-..+ ....++ ++....++++++++..+-+- ....+.+.+. ......++.-|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996543 233444 44566789999887544343 3345555443 22334445444
No 299
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.42 E-value=0.00093 Score=65.73 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia 103 (721)
-.++.++-..+...+..++.++.-+ -+-|.+.| +|+.. ...++ +.+...+.||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~----------------GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA----------------GLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence 4578889889988888887643322 22334443 33221 12455 668889999999
Q ss_pred EECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcc---cc----c-----------cccccccC--HHHHHHHHH
Q 004972 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVI---PG----T-----------QRLPRLVG--LSKAIEMML 161 (721)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~---P~----~-----------~~l~r~~G--~~~a~~l~l 161 (721)
.+.|.|.+.|.-|++++|- |++.+++++-+....-|.. +. . ..+.+.-| ...-.+++-
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~ 170 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDME 170 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhc
Confidence 9999999999999999995 9999999998877654432 11 0 11122223 344456666
Q ss_pred cCCCcCHHHHHHcCCccEEcCCc
Q 004972 162 LSKSITSEEGWKLGLIDAVVTSE 184 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~~ 184 (721)
....++|+||+++||||+|+++.
T Consensus 171 rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 171 RDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred cCcccCHHHHHHcCCCcEEeccC
Confidence 77789999999999999998653
No 300
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.42 E-value=0.00092 Score=73.92 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=67.6
Q ss_pred eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
.||+|||+|.- ...+...+++. +-+|+++|+++++++....-.+ ...+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 48999999984 34455555543 3589999999999877433222 223221111 247778888
Q ss_pred -cccCCCCEEEEccc----------------------------------CChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 380 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 380 -~~l~~aDlVIeavp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
+++++||+||.++- -+..+..++.+++.+++ |+++++.-|.
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TN 144 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTN 144 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCC
Confidence 88999999997663 13446667788888887 5566654333
No 301
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.42 E-value=0.00093 Score=65.64 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa 104 (721)
.++.+...++...|..++.++..+-+.+ .+.| +|+.. ...++ +.+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence 4889999999999999986543343443 3433 33221 12445 6677889999999
Q ss_pred ECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--c-----------------cccccccC--HHHHHHHHH
Q 004972 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLVG--LSKAIEMML 161 (721)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~G--~~~a~~l~l 161 (721)
+-|.|.+.|.-|++++|- |++.+++++.+....-|. -| + ..+.+.-| .....+++-
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~ 168 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD 168 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 999999999999999985 899999999887664332 22 0 11122223 334556666
Q ss_pred cCCCcCHHHHHHcCCccEEcCC
Q 004972 162 LSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~ 183 (721)
....++|+||++.||||+|++.
T Consensus 169 rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 169 RDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred cCcCCCHHHHHHcCCCcEEecc
Confidence 7778999999999999999965
No 302
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.38 E-value=0.0064 Score=65.31 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
.+++++-++...+.++.++... +-+|-|.=.++++ .|.+-.+. -......+.+ ..+....+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 4678999999999888887543 3344443222232 33322221 0112222334 45778999999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.+.+||.....+||+++|.+++.++. ||... +..+....-...|.+ ...++|+++++.|+||+|+|+
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaA-----sILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYVASPEACA-----AILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHH-----HHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence 9999666655455789999999988765 22211 122222111222333 338999999999999999964
No 303
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.36 E-value=0.00068 Score=71.58 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=62.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
+||+|||+|.+|..++..+...|.+|+++|++++..+.+.. .|. . .+. ..++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence 58999999999999999999999999999999876544311 110 0 000 1122 45688
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+|+||.++|... +-++....++++++|++..+.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998321 223444557788888866554
No 304
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.34 E-value=0.0013 Score=72.89 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=67.0
Q ss_pred eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
+||+|||+|.. +..+...+++. +-+|+++|+++++++....-. +...+....+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~----~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAV----KILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHH----HHHHHhhCCC--------eEEEEECCH
Confidence 48999999985 22444555443 358999999999987743322 2333321111 257778888
Q ss_pred -cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 380 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 380 -~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
+++++||+||.++-- +..+..++.+++.+++ |+++++..|.
T Consensus 69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tN 144 (437)
T cd05298 69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSN 144 (437)
T ss_pred HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 889999999977631 2235667778888887 5666654443
No 305
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.34 E-value=0.00063 Score=72.29 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=60.9
Q ss_pred CCceeEEEEcC-CCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC-
Q 004972 303 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD- 378 (721)
Q Consensus 303 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 378 (721)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++....+ +. .+.+ . .. .-.+...++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~-a~-Dl~~--------~-------~~-~~~v~~~td~ 67 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV-AA-DLSH--------I-------DT-PAKVTGYADG 67 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc-cc-chhh--------c-------Cc-CceEEEecCC
Confidence 35789999999 999999999998665 48999999321110 10 0000 0 00 012333323
Q ss_pred ---ccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 379 ---YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 379 ---~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++++++||+||.+.-. |....+.++..+.++ .++.+++..|..
T Consensus 68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNP 127 (321)
T PTZ00325 68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNP 127 (321)
T ss_pred CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 6789999999987732 222445555666666 445555544443
No 306
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0062 Score=63.23 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=122.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----c
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 380 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 380 (721)
...|+.||++.||..++.+.+.+|+.|.+|+|+..+++...++-.+ | ..|....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence 4579999999999999999999999999999999998876542111 1 012222333 2
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC-CCHHHH--hcccCCCCcEEEecCC---CCCCCCCeeE
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLNIV--GEKTSSQDRIIGAHFF---SPAHVMPLLE 454 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~-~~i~~l--~~~~~~~~r~ig~h~~---~p~~~~~lvE 454 (721)
.++.--.||..|-. -.....++++|.+++.++.||++...+ ++-++- .+.....--|+|+-.- ..++.+|.
T Consensus 67 klk~PR~iillvkA-G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-- 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKA-GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-- 143 (487)
T ss_pred hcCCCcEEEEEeeC-CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence 24555667766642 233457789999999998888864432 332221 1112233346665542 11222222
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCchhh----hhhh---hHHHHHHHHHHHc--CCCHHHHHH
Q 004972 455 IVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 517 (721)
Q Consensus 455 iv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~~gfi~----nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~ 517 (721)
++|| .++++-..++.+++.+... ..++++ ..|-.+ |-|= ..++.|++.++.. |++-.+|-.
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4555 4888899999998876432 244554 334322 4442 3457799999987 679999988
Q ss_pred HHHhc
Q 004972 518 AIRSF 522 (721)
Q Consensus 518 a~~~~ 522 (721)
++..+
T Consensus 222 vF~~W 226 (487)
T KOG2653|consen 222 VFDDW 226 (487)
T ss_pred HHHhh
Confidence 87444
No 307
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.32 E-value=0.00068 Score=72.35 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=64.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHH-HhhcCcee
Q 004972 307 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 375 (721)
Q Consensus 307 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 375 (721)
||+|||+ |.+|+.+|..++..|+ +++++|+++.. ++.-...+. +.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~---------------d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM---------------DCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehh---------------cccchhcCceec
Confidence 6999999 9999999999998654 59999996543 221100000 000 01122333
Q ss_pred c-cCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 376 V-LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 376 ~-~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
+ ++++++++||+||.+.-- +..+.+++..++.++.+++++++..|...
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv 128 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA 128 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 3 346889999999976621 23356667777888876777776555443
No 308
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.31 E-value=0.0018 Score=64.19 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 344 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 344 (721)
++|+|+|.|.||..+|+.|.+.|++|+++|++++.++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 579999999999999999999999999999998876654
No 309
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.31 E-value=0.00057 Score=64.86 Aligned_cols=99 Identities=27% Similarity=0.363 Sum_probs=65.5
Q ss_pred HhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc--------ccccc-----
Q 004972 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG--------TQRLP----- 148 (721)
Q Consensus 94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~--------~~~l~----- 148 (721)
.....||+||.++|.|..+++-|+.+||-+++.+.+.++...+. +|+-+. ....+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999999888876544 333111 00001
Q ss_pred -------------------------cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHH
Q 004972 149 -------------------------RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 193 (721)
Q Consensus 149 -------------------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 193 (721)
|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 111111 12335789999999999999999999877777665543
No 310
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.30 E-value=0.00078 Score=76.50 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=58.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHH-HHHHHHHHHHH
Q 004972 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWSQ 685 (721)
Q Consensus 615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~-~~~~~~~~~~~ 685 (721)
..++++.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|+.|.+ .+.+.++++.+
T Consensus 182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 357899999999999999999999999 99999999999999876567999999999854 34444454433
No 311
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.29 E-value=0.00065 Score=65.82 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=59.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH---HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-----
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL----- 377 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----- 377 (721)
||.|||+|.+|+.++..|++.|. +++++|.+. +.+.+-.- ... +-|+-..+.+...+.++....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999998 599999986 43332110 000 112212222222222221111
Q ss_pred -------Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972 378 -------DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 409 (721)
Q Consensus 378 -------~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~ 409 (721)
+. +.++++|+||+| .++.+.+..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 346889999999 56888887777776655
No 312
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.28 E-value=0.012 Score=61.09 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=94.0
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (721)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (721)
|++...+-. -.-++....-+.+.++++.+.... +-+|+++..| |+-+.+=.. . ...+.+. ...+.+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-----GARmQEg~~----s-L~qmak~-saa~~~~ 202 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-----GARMQEGSL----S-LMQMAKI-SSALYDY 202 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----Cccccccch----h-hhhhHHH-HHHHHHH
Confidence 444444433 247888999999999999887654 5566676543 333322000 0 0011111 1122121
Q ss_pred HhhCCCcEEEEECCcccccchH-hhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC-----cC
Q 004972 94 IEDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS-----IT 167 (721)
Q Consensus 94 l~~~~~p~Iaav~G~a~GgG~~-lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~-----~~ 167 (721)
...-..|.|+++.|+|.||+.. +++.||++|+.+++.+++.. +..... .+|+. -+
T Consensus 203 ~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAG-----------------PrVIe~--t~ge~lpe~fq~ 263 (296)
T CHL00174 203 QSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAG-----------------KRVIEQ--TLNKTVPEGSQA 263 (296)
T ss_pred HHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeC-----------------HHHHHH--hcCCcCCccccc
Confidence 2246799999999999999875 47779999998888887752 222211 23333 25
Q ss_pred HHHHHHcCCccEEcCCchHHHHHHHHHH
Q 004972 168 SEEGWKLGLIDAVVTSEELLKVSRLWAL 195 (721)
Q Consensus 168 a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 195 (721)
|+-.++.|+||.+|+..++.+....+..
T Consensus 264 ae~l~~~G~vD~iV~r~~lr~~l~~ll~ 291 (296)
T CHL00174 264 AEYLFDKGLFDLIVPRNLLKGVLSELFQ 291 (296)
T ss_pred HHHHHhCcCceEEEcHHHHHHHHHHHHH
Confidence 7778899999999999988776666543
No 313
>PRK04148 hypothetical protein; Provisional
Probab=97.27 E-value=0.003 Score=57.78 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=68.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+||.+||+| -|..+|..|++.|++|+.+|++++.++.+.+. + .. ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 479999999 89999999999999999999999987766431 1 00 000000 12233556899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
|+|-..=| +.-.+.-+-++++.+..+.+|..-++-.
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 99998887 5545566677888888888776544433
No 314
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.24 E-value=0.00079 Score=71.80 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=60.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.||..++..+.. ...+|++|+|++++.+...+.+.+ .+ ..+...++. +.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g-----------~~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QG-----------FDAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-----------CceEEeCCHHHHH
Confidence 589999999999999986654 346899999999997776443221 11 013334444 567
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
++||+||.|.+... .++.. +.+++++.|...++
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 89999998887442 22221 35677776654443
No 315
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.23 E-value=0.0016 Score=71.81 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=72.7
Q ss_pred eeEEEEcCCCCcH-HHHHHHHHC-----CCceEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972 306 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 378 (721)
Q Consensus 306 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 378 (721)
+||+|||+|..-+ .+...+++. +-+|+++|++ +++++....-+++ ..+....+ -.+..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999998643 444555542 3589999999 7887664333332 22221111 24677888
Q ss_pred c-cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 379 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 379 ~-~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
. +++.+||+||.++-- +..+..++.+++.+++ |+++++.-|...
T Consensus 69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~ 147 (419)
T cd05296 69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPA 147 (419)
T ss_pred HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHH
Confidence 7 789999999977631 1145667778888887 556665433332
Q ss_pred CH-HHHhcccCCCCcEEEe
Q 004972 424 DL-NIVGEKTSSQDRIIGA 441 (721)
Q Consensus 424 ~i-~~l~~~~~~~~r~ig~ 441 (721)
.+ ++...... +.|++|+
T Consensus 148 ~ivt~a~~k~~-~~rviGl 165 (419)
T cd05296 148 GIVTEAVLRHT-GDRVIGL 165 (419)
T ss_pred HHHHHHHHHhc-cCCEEee
Confidence 22 22222222 5566663
No 316
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.23 E-value=0.013 Score=61.10 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=99.2
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch--HHHHHHH
Q 004972 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD--VSVELVV 91 (721)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (721)
+.|.-|++. .-+++....+.+..+++.+... .+-+|.|.-.| |+-+.+ . ...+.. .....+
T Consensus 123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~~ak~~~a~- 187 (292)
T PRK05654 123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQMAKTSAAL- 187 (292)
T ss_pred EEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHhHHHHHHHH-
Confidence 334445553 4889999999999999988765 45667676444 332221 1 111111 111222
Q ss_pred HHHhhCCCcEEEEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHH
Q 004972 92 NLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEE 170 (721)
Q Consensus 92 ~~l~~~~~p~Iaav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~e 170 (721)
..+.....|.|+++.|.|+||+. ..++.+|+++|.+++.+++...++ +...+|. ++ .-+.-+++-
T Consensus 188 ~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv--------ie~~~~e----~l--pe~~~~ae~ 253 (292)
T PRK05654 188 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV--------IEQTVRE----KL--PEGFQRAEF 253 (292)
T ss_pred HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH--------HHhhhhh----hh--hhhhcCHHH
Confidence 23556789999999999999965 567789999999998888742210 0000110 00 111225777
Q ss_pred HHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972 171 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 200 (721)
Q Consensus 171 A~~~Glv~~vv~~~~l~~~a~~~a~~~a~~ 200 (721)
+.+.|+||.|+++.++......+.+.+...
T Consensus 254 ~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 254 LLEHGAIDMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred HHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence 789999999999999988888877765443
No 317
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.21 E-value=0.00026 Score=76.62 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=70.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|||||.|.||+.+|..+...|++|.+||+.... . + .... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 58999999999999999999999999999964321 0 0 0001 1234 45689
Q ss_pred CCEEEEcccCChH---HHHHHH-HHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCC
Q 004972 385 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF 444 (721)
Q Consensus 385 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~ 444 (721)
||+|+..+|-..+ -...++ ++....++++++++..+=+ +.-..+.+.+. .+..-.++..|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999995443 122333 4556678899988744333 33345555543 23334445544
No 318
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.20 E-value=0.0036 Score=63.31 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (721)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa 104 (721)
.+.++.+..+++.+++.....+..+ .++|.. .|+++.. ..++. +.+.+.+.++++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence 4678888999999999888766554 334432 2333321 11333 5677899999999
Q ss_pred ECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc
Q 004972 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (721)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~ 143 (721)
|+..|+.+|.-+||+||-++|.+.+.+|--...+|-.|.
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 999999999999999999999999999999999998885
No 319
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.00073 Score=70.58 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=54.9
Q ss_pred eeEEEEc-CCCCcHHHHHHHHHCCCceEEEe-CCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 5899999 99999999999999999999995 55421 0 2357
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+||+||.|++....+... ++++++++++.+..
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin 232 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN 232 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence 899999999854433222 27889998875543
No 320
>PLN02306 hydroxypyruvate reductase
Probab=97.19 E-value=0.0022 Score=70.06 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=71.7
Q ss_pred eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|||||.|.+|..+|..+. .-|.+|+.||+.... .+....... ......+... ..+....++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 669999999987642 111000000 0000000000 011122355 557
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 433 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~ 433 (721)
+.||+|+.++|-+.+...-+=.+....++++++|+..+-+ +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999999977766555556677788999988743333 33345555553
No 321
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.15 E-value=0.00049 Score=63.76 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=53.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
-++|.|||+|-||.+++..|+..|.. |++++|+.++++...+.+ ....+ .....++. +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 36899999999999999999999986 999999999877654321 00000 01122333 456
Q ss_pred CCCCEEEEcccCChH
Q 004972 383 KDVDMVIEAVIESVP 397 (721)
Q Consensus 383 ~~aDlVIeavpe~~~ 397 (721)
.++|+||.|+|-...
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 899999999985443
No 322
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.12 E-value=0.02 Score=59.08 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=83.9
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (721)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~----~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (721)
|+++-.+.. .--++....-+.+..+++.+.+| ..+-+|.|.-.| |+-+.+=.. . ...+.+.+ ..
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i~-~~ 129 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEIM-RA 129 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHHH-HH
Confidence 344444433 23677777788888888888652 223355554333 333322100 0 00011111 11
Q ss_pred HHHHHhhCCCcEEEEECCc--ccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCH--HHHHHHHHcCCC
Q 004972 90 VVNLIEDCKKPIVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGL--SKAIEMMLLSKS 165 (721)
Q Consensus 90 ~~~~l~~~~~p~Iaav~G~--a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~--~~a~~l~ltg~~ 165 (721)
+ ..+... .|+|+++.|. |+||+..++..||++||++++++++.-..+ .-...|. -...+--|.-+.
T Consensus 130 ~-~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V--------Ie~~~G~e~~~~~d~~l~~~~ 199 (274)
T TIGR03133 130 I-LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV--------IEQEAGVEEFDSRDRALVWRT 199 (274)
T ss_pred H-HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH--------HHHhcCCCccCHHHhcccccc
Confidence 2 123444 9999999999 899999999999999999998888742110 0000110 011111222334
Q ss_pred cCHHHHHHcCCccEEcCCc
Q 004972 166 ITSEEGWKLGLIDAVVTSE 184 (721)
Q Consensus 166 ~~a~eA~~~Glv~~vv~~~ 184 (721)
+.++.....|++|.+++++
T Consensus 200 lGG~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 200 TGGKHRFLSGDADVLVEDD 218 (274)
T ss_pred cchHhHhhcccceEEeCCH
Confidence 5556677799999999764
No 323
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.12 E-value=0.016 Score=60.81 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
-.++++-++...+.++.++... +-+|-|-=.+++++ |.+-.+. . ......+.+ ..+....+|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~~------G----~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEKL------G----QGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHHH------h----HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 5677889999999888887543 33444432233333 3221110 0 112222333 34678899999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.|.|||.-....||+++|.+++.|+. ||.... ..+.. ..+|.+ +...-+++|++.+++|+||.|+|+
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~-----Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAA-----ILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHH-----HHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 9999888865555699999999998875 232211 12211 233333 234567999999999999999973
No 324
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.11 E-value=0.011 Score=67.65 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
-+++++-++...+.++.+.... +-+|-|-=.+++++ |.+..+.. ....+.+.+ ..+....+|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 5677888888888888887543 33444432223332 32222210 112223334 44678999999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.|.|||......||+++|.+++.++. ||... +..+.. ..+|.+ +...-.++|++.+++|+||.|+|.
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaA-----sILwkd---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYVASPEACA-----AILWKS---AKAAPK-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHH-----HHHhcC---cccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 9999888877777799999999987664 22211 111211 122222 234567899999999999999974
No 325
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.08 E-value=0.0012 Score=70.31 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=59.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||+|.||..++..+...| .+|+++|+++++.+.....+ |. .....++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence 58999999999999999998865 68999999998765532211 10 00011122 4467
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhC-CCCeEEEecCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTS 421 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts 421 (721)
++|+||.|++.+.. ..++.++.... ..+.++++.+.
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCC
Confidence 89999999985443 34444432222 24566665543
No 326
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.06 E-value=0.0021 Score=70.46 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=60.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 58999999999999999999999999999999988766531 121 111111446789
Q ss_pred CEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecC
Q 004972 386 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 420 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 420 (721)
|+||+|+... .++. .....++++.+++..+
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999998532 2232 3355678888776433
No 327
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.05 E-value=0.018 Score=59.83 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=96.3
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
|.-+++. .-+++....+.+..+++.+... .+-+|.|+..|+. -+.|= ......+.+. ...+ ..+.
T Consensus 124 v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg-----~~sL~~~ak~-~~~~-~~~~ 190 (285)
T TIGR00515 124 VAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEA-----LLSLMQMAKT-SAAL-AKMS 190 (285)
T ss_pred EEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccc-----hhHHHhHHHH-HHHH-HHHH
Confidence 3344443 4789999999999999888754 4566777654432 11110 0001011111 1222 3356
Q ss_pred hCCCcEEEEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC-----cCHH
Q 004972 96 DCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS-----ITSE 169 (721)
Q Consensus 96 ~~~~p~Iaav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~-----~~a~ 169 (721)
....|.|+++.|+|+||+. ..++.+|+++|.+++.+++....+ . +. .+|+. -+|+
T Consensus 191 ~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------------i-e~-ti~e~lpe~~q~ae 251 (285)
T TIGR00515 191 ERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------------I-EQ-TVREKLPEGFQTSE 251 (285)
T ss_pred cCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------------H-HH-HhcCccchhcCCHH
Confidence 6789999999999999965 567899999999999888753221 0 00 12232 2566
Q ss_pred HHHHcCCccEEcCCchHHHHHHHHHHHHH
Q 004972 170 EGWKLGLIDAVVTSEELLKVSRLWALDIA 198 (721)
Q Consensus 170 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 198 (721)
-+.+.|+||.|+++.++.+....+.+.+.
T Consensus 252 ~~~~~G~vD~iv~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPEMKKTLASLLAKLQ 280 (285)
T ss_pred HHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence 67789999999999999887777776543
No 328
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.03 E-value=0.037 Score=58.18 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
-+++++-.+...+.++.++.- .+-+|-|.=.+++++ |.+-.+ .. ......+.+ ..+....+|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~------~G----~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE------RG----QSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh------cc----HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567788888888888888754 344455543333333 332211 00 112233444 45778999999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.|.|||......||+++|.+++.|+. ||.... ..+.. ..++.+..- ...+++.++.+.|+||+|+|+
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~-----Il~~~---~~~a~~aae-~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCAS-----ILWKD---ASKAPEAAE-AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEeecCHHHHHH-----HHhcC---chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence 9999888775555699999999988764 222111 11111 123333333 556899999999999999964
No 329
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0016 Score=67.50 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=54.7
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||. |.||.++|..|.++|+.|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 58999999 99999999999999999999942211 22 3468
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+||+||.|++....+... ++++++++++.+..
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin 232 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN 232 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence 899999999854444332 37899999875533
No 330
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.97 E-value=0.014 Score=61.20 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (721)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav 105 (721)
-+++++-.+...+.++.++... +-+|-|.=.+++++ |.+-.+.. ......+.+ ..+....+|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERFK-MPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 5677888888888888887543 34444433233332 33222110 112222334 44678899999999
Q ss_pred CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972 106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (721)
-|.|.|||......||++++.+++.++. ||...- ..+.. ..++.+..- -..++|.++.+.|+||.|+|+
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~-----Il~kd---~~~a~~aae-~~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAA-----ILWKD---ASKAPKAAE-AMKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEecCHHHHHH-----Hhccc---hhhHHHHHH-HccCCHHHHHHCCCCeEeccC
Confidence 9999888775445699999999988765 222111 11211 122222222 366789999999999999963
No 331
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.96 E-value=0.0023 Score=68.54 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=62.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.||...+..+.. ...+|.+||+++++.+...+++++ .+ -.+...++. +.+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence 579999999999997766654 346899999999998765443321 11 013334455 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+||.|+|..-. ++. ...+++++.|....|.
T Consensus 191 ~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 191 EGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 999999999985332 221 2346788877655554
No 332
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.011 Score=61.42 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=89.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc-
Q 004972 306 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 382 (721)
-+||+||+|.||+.|....++ .|++|+ +-|++.+.+.++.++....-...++....+.-...-..+++..|+|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 379999999999999987764 698866 66788887776654321111111121111222222233567777776443
Q ss_pred --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-CCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCC
Q 004972 383 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE 459 (721)
Q Consensus 383 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~ 459 (721)
...|+||++.--..--.+-.+..|. ...-++.-|.- ...+.-+....... .|+ ....+.
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~---~Gv------------iyS~~~ 159 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADA---AGV------------IYSGGA 159 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhh---cCe------------EEeccC
Confidence 4568899987422333333334333 33344543332 22222221111110 121 122344
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 460 RTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
.-.|...-.+.+|.+.+|..++.++.
T Consensus 160 GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 160 GDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 45677788889999999999999863
No 333
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0043 Score=62.78 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=61.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----- 379 (721)
++|.|||+|.+|.++|..|.+.|++|+++|.+++.++..... .+... .+.. .++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence 479999999999999999999999999999999997763210 00000 1111 1222
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEe
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILAT 418 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s 418 (721)
.-+.++|.+|-++.+|.. ..++..+... .....+++-
T Consensus 62 agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 62 AGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred cCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEE
Confidence 236899999998875443 3555555433 445556654
No 334
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.93 E-value=0.0018 Score=68.83 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=72.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+++||||.|.+|..+|+.+.--|.+|..||+++.. +.. +. ......+-.+.++.|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~------------~~------------~~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE------------KE------------LGARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH------------hh------------cCceeccHHHHHHhC
Confidence 68999999999999999999778999999998741 110 00 112223322668999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 433 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~ 433 (721)
|+|+..+|-..+...-+=++....++++++|+ |++ + +.-..+.+.+.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999888766665577778889998886 555 3 33344555543
No 335
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0042 Score=60.40 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=89.8
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
|.|..| ++..+...+...+-.++.++..+-|.| .+.|+...+|. .++ +.+.
T Consensus 30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~----------------------AIy-dtm~ 82 (200)
T COG0740 30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL----------------------AIY-DTMQ 82 (200)
T ss_pred EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH----------------------HHH-HHHH
Confidence 444444 444455566666666665544444444 44444333332 455 6688
Q ss_pred hCCCcEEEEECCcccccchHhhhhcCEE--EeeCCceEeCcccccCcccc--c-----------------cccccccCHH
Q 004972 96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLVGLS 154 (721)
Q Consensus 96 ~~~~p~Iaav~G~a~GgG~~lalacD~r--ia~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~G~~ 154 (721)
..+.||...+-|.|..-|.-|++++|.. ++.+++++-..... |.+-| + ..+...-|..
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~ 161 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQT 161 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999985 99999998776665 44444 1 0111111221
Q ss_pred --HHHHHHHcCCCcCHHHHHHcCCccEEcCCc
Q 004972 155 --KAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184 (721)
Q Consensus 155 --~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 184 (721)
.-...+-....++|+||+++||||+|....
T Consensus 162 ~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 162 LEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred HHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 122333455668999999999999998654
No 336
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.91 E-value=0.0025 Score=69.60 Aligned_cols=96 Identities=24% Similarity=0.227 Sum_probs=64.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..| ....+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G-------------~~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDG-------------FRVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcC-------------CEeCCHHHHHhcC
Confidence 5899999999999999999999999999999987644331 112 1111111456789
Q ss_pred CEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCC---CCHHHHhc
Q 004972 386 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTST---IDLNIVGE 430 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~i~~l~~ 430 (721)
|+||+++.. ..++. +....++++++++..+.. +....+.+
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 999998752 23332 355667888888754432 44445544
No 337
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.91 E-value=0.0015 Score=65.49 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc----ee--
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML----KG-- 375 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i----~~-- 375 (721)
.+|+|||+|.+|+.+|..|++.|. +++++|.+ .+.+.+-. + ... .-|+-..+.+...+..+ ..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---ehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999998 59999988 33322110 0 000 01111111112222111 11
Q ss_pred -----cc-Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972 376 -----VL-DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 409 (721)
Q Consensus 376 -----~~-~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~ 409 (721)
++ +. +.++++|+||+|+ ++...+..+.......
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH 141 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 00 11 3467899999995 5777777776665554
No 338
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0016 Score=70.37 Aligned_cols=95 Identities=23% Similarity=0.215 Sum_probs=62.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc--Cc-c
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S 380 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~ 380 (721)
|+||.|||+|.+|+.+|..|+++| .+|++.||+.++.+++..... +++... .+...+ .+ +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~-------~vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEAL-------QVDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeE-------EecccChHHHHH
Confidence 478999999999999999999999 899999999999888643211 011100 011111 11 4
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
.+++.|+||.|+|.... ..+++. .++.++-.++.+
T Consensus 65 li~~~d~VIn~~p~~~~--~~i~ka---~i~~gv~yvDts 99 (389)
T COG1748 65 LIKDFDLVINAAPPFVD--LTILKA---CIKTGVDYVDTS 99 (389)
T ss_pred HHhcCCEEEEeCCchhh--HHHHHH---HHHhCCCEEEcc
Confidence 57888999999994333 344433 233455555433
No 339
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.87 E-value=0.0045 Score=73.04 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=76.3
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCCCC------------CCCe
Q 004972 388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 452 (721)
Q Consensus 388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~~p~~------------~~~l 452 (721)
||.|+| +....+++.++.++++++++|++.+|+.. +..+...+.. ..+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 689999 99999999999999999999998777643 3444444432 35799999975553 3445
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972 453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484 (721)
Q Consensus 453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 484 (721)
+-+++.+.++++.++.+.++++.+|.+++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 66888899999999999999999999999883
No 340
>PRK05086 malate dehydrogenase; Provisional
Probab=96.87 E-value=0.0026 Score=67.65 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred eeEEEEcC-CCCcHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee--ccC-
Q 004972 306 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 378 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 378 (721)
+||+|||+ |.+|.+++..+.. .+++++++|+++.....+.+ + ... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l--------~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-L--------SHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-h--------hcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 24689999998542100000 0 000 00012332 345
Q ss_pred ccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 379 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 379 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++++++||+||.|.-. |..+.+++...+.++. ++.+++..|..
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP 120 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNP 120 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 4788999999998842 2235566667777774 55666544443
No 341
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.85 E-value=0.041 Score=57.43 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=67.4
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (721)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~----~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (721)
|+++-.+.. .--++.......+..+++.+.++. .+-+|.|.-.| |+-+.+-.. . ...+.+.+ ..
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~----~-L~~~a~i~-~~ 138 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA----G-LAAIAEIM-RA 138 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH----H-HHHHHHHH-HH
Confidence 334444433 247788888889999998887654 25566665433 233322100 0 00011111 22
Q ss_pred HHHHHhhCCCcEEEEECCc--ccccchHhhhhcCEEEeeCCceEeCc
Q 004972 90 VVNLIEDCKKPIVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLP 134 (721)
Q Consensus 90 ~~~~l~~~~~p~Iaav~G~--a~GgG~~lalacD~ria~~~a~~~~p 134 (721)
+ ..+... +|+|+++.|. |+||+...+..||++||++++++++.
T Consensus 139 ~-~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 139 I-VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred H-HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 2 124444 9999999999 99999999999999999999888874
No 342
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.84 E-value=0.0028 Score=69.68 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=60.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .... ++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHhC
Confidence 58999999999999999999999999999999877543311 11 1111 12 44678
Q ss_pred CCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 421 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts 421 (721)
+|+||+|+.. . .++. +....++++++++..+.
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999998742 2 2333 45566788988875443
No 343
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.83 E-value=0.0027 Score=67.97 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=65.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCC-------CceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHH-HhhcCce
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK 374 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~ 374 (721)
.||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++.. .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence 47999999 999999999998855 489999996531 2110 00000000 0112344
Q ss_pred eccCc-cccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 375 GVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 375 ~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
.+.++ +++++||+||.+.-- |..+.+++..++.++++++++++..|+.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 44554 889999999977621 2334466777788887777776655543
No 344
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.81 E-value=0.0092 Score=61.16 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=87.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 383 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 383 (721)
-+||+|||.|.-|.+-|.+|..+|.+|++=-+.... .+++ .+.| ..+.+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence 369999999999999999999999998765554333 2222 2222 33333337789
Q ss_pred CCCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCCCCHHHHhcccCCCC--cEEEecCCCCCCC----------C
Q 004972 384 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAHV----------M 450 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~--r~ig~h~~~p~~~----------~ 450 (721)
.||+|+.-+|+ +.-.++++ +|.+.++++..+. -+.++.+..- ....|. .++=+-|-.|-+. .
T Consensus 74 ~ADvim~L~PD--e~q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~Gv 148 (338)
T COG0059 74 RADVVMILLPD--EQQKEVYEKEIAPNLKEGAALG-FAHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGV 148 (338)
T ss_pred cCCEEEEeCch--hhHHHHHHHHhhhhhcCCceEE-eccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCc
Confidence 99999999993 44457776 8999999988664 3334443221 111121 1222222222211 1
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCe
Q 004972 451 PLLEIVRTERTSAQVILDLMTVGKIIKKV 479 (721)
Q Consensus 451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~ 479 (721)
|.+-.| ....+-.+.+.+..+.+.+|.+
T Consensus 149 P~LiAV-~qD~sG~a~~~Ala~AkgiGg~ 176 (338)
T COG0059 149 PALIAV-HQDASGKALDIALAYAKGIGGT 176 (338)
T ss_pred eeEEEE-EeCCCchHHHHHHHHHHhcCCC
Confidence 111122 2233556788888888888843
No 345
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.81 E-value=0.016 Score=66.94 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=72.9
Q ss_pred cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC
Q 004972 12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (721)
Q Consensus 12 ~~~v~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~ 75 (721)
++.+.+|-++. + +.+.+. .-.+.++.++++.+.+|+.|++|||.-.+ +.|.++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 123221 22567999999999999999999998642 1233322211
Q ss_pred CCcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCc
Q 004972 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP 134 (721)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~p 134 (721)
...+.+ ..+....|||||..++.+ -+|+-|+.+||.+++.+.+.+++.
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence 122333 335667899999888765 678999999999999998888654
No 346
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.78 E-value=0.0022 Score=66.87 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 346 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 346 (721)
++|.|+|+|.+|.+++..++..|++|+++++++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999988766543
No 347
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.77 E-value=0.0063 Score=55.17 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcccc
Q 004972 307 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 382 (721)
Q Consensus 307 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l 382 (721)
||+|+|+ |.+|..++..+... +++++.+ +++.+..+.+.. ..+.+... ..-... .+++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence 6899995 99999999999884 7887766 554322211110 00001000 000011 1112 2
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
.++|+||.|+|.+.. .+++..+...+.+++++++.++.+...
T Consensus 64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~~ 105 (122)
T smart00859 64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRMD 105 (122)
T ss_pred cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccCC
Confidence 589999999995533 344444455568899999988886643
No 348
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.011 Score=64.35 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=52.2
Q ss_pred ceeEEEEcCCCCcHHHHH--HHHH----CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972 305 VRKVAVIGGGLMGSGIAT--AHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 378 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~--~la~----~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 378 (721)
..||+|||+|..+.+--. .+.+ .+.++.++|+++++.+.. ....+.+++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999998876543 2222 245899999999997733 33334444432221 24777888
Q ss_pred c-cccCCCCEEEEcc
Q 004972 379 Y-SEFKDVDMVIEAV 392 (721)
Q Consensus 379 ~-~~l~~aDlVIeav 392 (721)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 8 7899999999776
No 349
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.73 E-value=0.0041 Score=56.69 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=60.7
Q ss_pred eeEEEEcC-CCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 306 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
+||+|+|+ |.||+.++..+.+ .|++++ .+|++++.... +.+. .....+ ...+..++++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence 48999999 9999999999988 688854 77877621100 0000 000000 0134455666 45
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 429 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~ 429 (721)
+..+|+||+... ++.....++...+ .+..+++.|+++.-.++.
T Consensus 65 ~~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 677999999883 6655555555444 366777888888755443
No 350
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.72 E-value=0.016 Score=57.76 Aligned_cols=142 Identities=19% Similarity=0.228 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972 27 ALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa 104 (721)
..+.++.+.+...+-.++.++..+ -+-|.+.|+...+|-=+.. ......++ +.+...+-|+...
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv 113 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI 113 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence 345558888888888887554323 2334566655555411000 01123555 6677888899999
Q ss_pred ECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--------c-----------cccccccC--HHHHHHHHH
Q 004972 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--------T-----------QRLPRLVG--LSKAIEMML 161 (721)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--------~-----------~~l~r~~G--~~~a~~l~l 161 (721)
+-|.|.+.+.-|++++|- |++.+++++-+....-|. -| . ..+.+.-| ...-.+++-
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~-~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~ 192 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA-RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD 192 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence 999999999999999995 999999999887765443 23 0 11112222 233335555
Q ss_pred cCCCcCHHHHHHcCCccEEcCC
Q 004972 162 LSKSITSEEGWKLGLIDAVVTS 183 (721)
Q Consensus 162 tg~~~~a~eA~~~Glv~~vv~~ 183 (721)
.-..++|+||+++||||+|+.+
T Consensus 193 rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 193 RMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred CCCcCCHHHHHHcCCCcEEecc
Confidence 5667899999999999999854
No 351
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.71 E-value=0.0045 Score=65.29 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=71.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
=++|+|+|+|.+|..+|+.|...|..+.-+.+++...+...+. + -...+..+.+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHhh
Confidence 4789999999999999999999995455555555443332110 0 001222366799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhccc
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT 432 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~ 432 (721)
+|+||.|.|-+.+...-+=+++...++++.+|+...-+-.+. ++.+.+
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 999999999888877777788889999999887554443333 444444
No 352
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0024 Score=67.03 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=51.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|.|||+|-+|.+++..|+..|. +|+++||+.++++...+.+.... .. ..+...++. +.++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 589999999999999999999998 79999999988776544332110 00 011111222 3467
Q ss_pred CCCEEEEccc
Q 004972 384 DVDMVIEAVI 393 (721)
Q Consensus 384 ~aDlVIeavp 393 (721)
++|+||.|+|
T Consensus 192 ~aDiVInaTp 201 (284)
T PRK12549 192 AADGLVHATP 201 (284)
T ss_pred CCCEEEECCc
Confidence 8999999987
No 353
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.69 E-value=0.0057 Score=65.60 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=63.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+ + -.+...+++ +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 579999999999998887753 454 89999999998877654432110 1 012334454 567
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+++|+||.|.|... .++. ..+++++.|....|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 89999999998442 3333 456788877665553
No 354
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.69 E-value=0.0033 Score=69.47 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=61.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcC-------------cee-ccHHHHHhc
Confidence 5899999999999999999999999999999987643321 111 111 122 45788
Q ss_pred CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCC
Q 004972 385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 424 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~ 424 (721)
+|+||.+.. + +.++ .+....++++++|+. ++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLIN-vGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGN-IGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEEE-cCCCc
Confidence 999999864 2 2333 245556789988864 44333
No 355
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.67 E-value=0.0025 Score=57.83 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=61.3
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCC-Cc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Ccccc
Q 004972 307 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 382 (721)
Q Consensus 307 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 382 (721)
||+||| .|++|..+...|.++- ++ +.++.++.+.-..... ... ...+ ...+...+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence 799999 7999999999999853 34 4556666522111100 000 0000 01223322 44667
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
.++|+||.|+| .....++..++ ++.++.++++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 66666666655 45788888988876554
No 356
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.64 E-value=0.0063 Score=64.57 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=62.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.+|...+..+.. .+. +|.+|++++++.+...+++.. .+ + .+. .++. +.+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 589999999999999999975 454 799999999987776543321 01 0 111 2334 568
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+||.|.|.... ++.. .+++++.|....+.
T Consensus 187 ~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCCC
Confidence 999999999985433 3322 25778777655544
No 357
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.62 E-value=0.0073 Score=61.61 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=52.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC---Cce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G---~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
+||+|||+|.||..++..+...+ +++ .++++++++.+... +.....++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence 58999999999999999987643 443 46777775544321 11233455544
Q ss_pred --cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004972 382 --FKDVDMVIEAVIESVPLKQKIFSELEK 408 (721)
Q Consensus 382 --l~~aDlVIeavpe~~~~k~~v~~~l~~ 408 (721)
...+|+||||.. .+..++.-..+..
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~ 84 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT 84 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence 378999999997 7766666655543
No 358
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.62 E-value=0.0078 Score=57.79 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=55.5
Q ss_pred eeEEEEcCCCC-cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||+|-| |..+|..|.+.|..|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999987 88899999999999999998753221 23678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 425 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i 425 (721)
||+||-|++..--+..+ .++++.++++.+..-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999743222222 24567778776655443
No 359
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.60 E-value=0.0032 Score=69.86 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLK 343 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 343 (721)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 58999999999999999999999 689999999887654
No 360
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.57 E-value=0.0091 Score=58.57 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=62.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 307 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
||++||+|.+|..+...+... .. -|.+||++.+++..+.+. .. ....+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~-~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VG-RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cC-CCccccHHHHh
Confidence 799999999999999887654 23 578999999987654321 01 1123555 445
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 424 (721)
++.|+|+||.. .+..+++..++.+. .-+.|++| ++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 99999999997 77667766665442 34667765 33444
No 361
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.54 E-value=0.0074 Score=64.75 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=52.2
Q ss_pred eeEEEEcCCCCcHHHHHHHH-HCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++++|||+|.+|...+..++ ..+. +|++|+|++++++...+++.+.+ + + .+...++. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 57999999999999999997 3664 69999999999877654332110 1 0 12334444 567
Q ss_pred CCCCEEEEcccC
Q 004972 383 KDVDMVIEAVIE 394 (721)
Q Consensus 383 ~~aDlVIeavpe 394 (721)
++||+||.|+|.
T Consensus 193 ~~aDiVvtaT~s 204 (326)
T TIGR02992 193 SGADIIVTTTPS 204 (326)
T ss_pred ccCCEEEEecCC
Confidence 899999999984
No 362
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.51 E-value=0.024 Score=59.96 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=72.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCH-HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
.||+|||+|.||...+..+.+. +++++ ++|+++ +.+.. .- + +..+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~------------~-v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ET------------P-VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cC------------C-ccccCCHHHh
Confidence 5899999999999999988765 78877 579985 32211 00 0 1112233 44
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 461 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t 461 (721)
+.++|+|+.|.|..... ..+.+.+..+.=+++.. +++. .
T Consensus 58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999855442 22222223322222221 0111 1
Q ss_pred CHHHHHHHHHHHHHcCCeeEE-EcCCCchh-hhhhhh
Q 004972 462 SAQVILDLMTVGKIIKKVPVV-VGNCTGFA-VNRAFF 496 (721)
Q Consensus 462 ~~e~~~~~~~l~~~lG~~~v~-v~d~~gfi-~nRl~~ 496 (721)
.++..+.+....+.-|+..++ .+=.|||. +||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 356777777777876665554 47778854 477754
No 363
>PRK10949 protease 4; Provisional
Probab=96.49 E-value=0.021 Score=66.10 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccccc
Q 004972 33 VAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGG 112 (721)
Q Consensus 33 ~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~Gg 112 (721)
+.++.++++.+.+|+.|++|||.-.+. .|..+..+ ....+.+ ..+....||+||. ...+.-+
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s~ 158 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQG 158 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccch
Confidence 468999999999999999999986421 11111111 1122334 3466778999985 4444567
Q ss_pred chHhhhhcCEEEeeCCceEeCc
Q 004972 113 GLELAMGCHARIAAPKTQLGLP 134 (721)
Q Consensus 113 G~~lalacD~ria~~~a~~~~p 134 (721)
++-||.+||.+++.+.+.+++.
T Consensus 159 ~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 159 QYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhhhCCEEEECCCceEEEe
Confidence 8999999999999998887654
No 364
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.43 E-value=0.0053 Score=60.62 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.2
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 346 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 346 (721)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 58999996 999999999999999999999999887766543
No 365
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.43 E-value=0.0048 Score=64.68 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=51.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|.|+|+|-+|.+++..|+..| .+|++++|+.++++...+.+.. .. .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6899999999887765432211 00 01111122 4568
Q ss_pred CCCEEEEcccCC
Q 004972 384 DVDMVIEAVIES 395 (721)
Q Consensus 384 ~aDlVIeavpe~ 395 (721)
++|+||-|+|-.
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999843
No 366
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.034 Score=60.21 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=102.1
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-eCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (721)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (721)
++.|..+.++. .+++...+.+.+.++.++++. ..++|+. -+++. +.+...++.
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGG---------------------l~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEEN-AAAVVLELDTPGG---------------------LLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCc---------------------hHHHHHHHH
Confidence 45677777765 599999999999999999765 2344442 22110 012234566
Q ss_pred HHHHhhCCCcEEEEE---CCcccccchHhhhhcCEEEeeCCceEeCcccc-cCcccc--c----c------cccccc--C
Q 004972 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPG--T----Q------RLPRLV--G 152 (721)
Q Consensus 91 ~~~l~~~~~p~Iaav---~G~a~GgG~~lalacD~ria~~~a~~~~pe~~-~Gl~P~--~----~------~l~r~~--G 152 (721)
+.+.+.+.|++..| .+.|..+|..++++||+..|++.+.+|-...- .|--+. . . -+.+.- -
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 77999999988888 44699999999999999999999999875443 331111 0 0 111222 2
Q ss_pred HHHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972 153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182 (721)
Q Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 182 (721)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 456778999999999999999999998763
No 367
>PLN02494 adenosylhomocysteinase
Probab=96.40 E-value=0.0067 Score=66.94 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=60.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 384 (721)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..| .... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G-------------~~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEG-------------YQVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcC-------------Ceec-cHHHHHhh
Confidence 5899999999999999999999999999999987644331 111 0111 12 44678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
+|+||++.... . .+..+....++++++|+..+.
T Consensus 310 ADVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence 99999876522 1 222445556789988875444
No 368
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.38 E-value=0.027 Score=50.63 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972 307 KVAVIGGGLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 382 (721)
||+|||+|.+|......+.+. +.+| .++|+++++.+...+. -.+...++++ .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888876 4455 4899999887764221 1233455653 33
Q ss_pred C--CCCEEEEcccCChHHHHHHHHHHHh
Q 004972 383 K--DVDMVIEAVIESVPLKQKIFSELEK 408 (721)
Q Consensus 383 ~--~aDlVIeavpe~~~~k~~v~~~l~~ 408 (721)
+ +.|+|+.|+|. ..-.++..+..+
T Consensus 59 ~~~~~D~V~I~tp~--~~h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVIIATPP--SSHAEIAKKALE 84 (120)
T ss_dssp HHTTESEEEEESSG--GGHHHHHHHHHH
T ss_pred HhhcCCEEEEecCC--cchHHHHHHHHH
Confidence 3 79999999994 333455444433
No 369
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.38 E-value=0.0056 Score=58.22 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=35.1
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 343 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 343 (721)
+||+|||+ |..|+-|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999998 999999999999999999999999998653
No 370
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.37 E-value=0.0068 Score=67.47 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=49.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||+|.||..++..+...|. +|+++++++++++.....+ |. ......+. +.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-----------EAIPLDELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-----------cEeeHHHHHHHhc
Confidence 589999999999999999999997 7999999998765432211 10 00001122 4567
Q ss_pred CCCEEEEcccCC
Q 004972 384 DVDMVIEAVIES 395 (721)
Q Consensus 384 ~aDlVIeavpe~ 395 (721)
++|+||.|++.+
T Consensus 242 ~aDvVI~aT~s~ 253 (423)
T PRK00045 242 EADIVISSTGAP 253 (423)
T ss_pred cCCEEEECCCCC
Confidence 899999999743
No 371
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.31 E-value=0.032 Score=67.85 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHC-C
Q 004972 255 GGYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-N 328 (721)
Q Consensus 255 ~~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~-G 328 (721)
+-++.|......+..+....+ ..+..+-|....+.+....-.........++||+|||+|.||...|..|++. +
T Consensus 514 ~d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~ 593 (1042)
T PLN02819 514 DDKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKT 593 (1042)
T ss_pred CcHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcC
Confidence 445666666666666664222 2445555554444332221111122344578999999999999999999875 3
Q ss_pred Cc-------------eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc----cccCCCCEEEE
Q 004972 329 IY-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIE 390 (721)
Q Consensus 329 ~~-------------V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVIe 390 (721)
++ |++.|++++.++.+.+.+ . + . ..+.. .+|. +.++++|+||.
T Consensus 594 ~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~-~-~---------~~v~lDv~D~e~L~~~v~~~DaVIs 654 (1042)
T PLN02819 594 ISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------E-N-A---------EAVQLDVSDSESLLKYVSQVDVVIS 654 (1042)
T ss_pred ccccccccccccccEEEEECCCHHHHHHHHHhc--------C-C-C---------ceEEeecCCHHHHHHhhcCCCEEEE
Confidence 34 999999998876643211 0 0 0 01122 2232 23478999999
Q ss_pred cccCCh
Q 004972 391 AVIESV 396 (721)
Q Consensus 391 avpe~~ 396 (721)
|+|...
T Consensus 655 alP~~~ 660 (1042)
T PLN02819 655 LLPASC 660 (1042)
T ss_pred CCCchh
Confidence 999543
No 372
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.31 E-value=0.013 Score=63.08 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=52.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-CC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.+|...+..+.. .+ .+|++|++++++++...+.+.+.+ + + .+...++. +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999999888875 44 489999999999887654332110 1 0 12334554 567
Q ss_pred CCCCEEEEcccC
Q 004972 383 KDVDMVIEAVIE 394 (721)
Q Consensus 383 ~~aDlVIeavpe 394 (721)
++||+||.|.|.
T Consensus 196 ~~aDiVi~aT~s 207 (330)
T PRK08291 196 AGADIIVTTTPS 207 (330)
T ss_pred ccCCEEEEeeCC
Confidence 889999999874
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.25 E-value=0.0071 Score=65.99 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=36.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 344 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 344 (721)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3579999999999999999999999999999999876654
No 374
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.23 E-value=0.076 Score=53.82 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH---HhhCCCcEE
Q 004972 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIV 102 (721)
Q Consensus 27 al~~~~~~~l~~~l~~~-~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~p~I 102 (721)
.++.+-...+...+..+ +++..+-+|.|.=.+ .|-.|..-++.. +......++ +. ..+.+.|+|
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~-~a~a~a~~~~vP~I 111 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLA-KALALARLAGHPVI 111 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHH-HHHHHhhcCCCCEE
Confidence 57777777777777775 444555555554322 233333222110 111122222 22 445669999
Q ss_pred EEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcC--CCcCHHHHHHcCCc
Q 004972 103 AAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI 177 (721)
Q Consensus 103 aav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg--~~~~a~eA~~~Glv 177 (721)
+.|-|.++|||+ .+.+.+|.++|.+++.++ .+|. ..+...+ ....+.++.-+- ...+.+.+.++|+|
T Consensus 112 svI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~-~~~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 112 GLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKR-SVEELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred EEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHcc-CHhHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 999999998876 555568888887776654 3443 1111111 113344443322 24577789999999
Q ss_pred cEEcCCch
Q 004972 178 DAVVTSEE 185 (721)
Q Consensus 178 ~~vv~~~~ 185 (721)
|.|+++.+
T Consensus 184 d~vi~~~~ 191 (238)
T TIGR03134 184 HALLDVAD 191 (238)
T ss_pred cEEeCCCC
Confidence 99997655
No 375
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.23 E-value=0.099 Score=59.33 Aligned_cols=139 Identities=21% Similarity=0.166 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCC--CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEE
Q 004972 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (721)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~I 102 (721)
..+++......+..+++.+.++. +-+|.|.- |.|+ ++.+-.... ..+...+ ..+ ..+.. ..|+|
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~l-----~~~g~i~-~~~-~~~~~-~iP~I 135 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVESL-----MGMGRIF-RAI-ARLSG-GIPQI 135 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHHH-----HHHHHHH-HHH-HHHHT-TS-EE
T ss_pred cCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhhh-----hhhHHHH-HHH-HHHhc-CCCeE
Confidence 47899999999999999888664 44555543 3344 444322110 0111111 222 23555 99999
Q ss_pred EEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHc
Q 004972 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL 174 (721)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~ 174 (721)
+++.|.|+|||..++..||++|+.++ +.+++. |+... + ..+|+.++.++. ...
T Consensus 136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~~~s 196 (493)
T PF01039_consen 136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------------GPRVV-E-SATGEEVDSEELGGADVHAAKS 196 (493)
T ss_dssp EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------------THHHH-H-HHHSSCTSHHHHHBHHHHHHTS
T ss_pred EEEccccccchhhcccccCccccCccceEEEec-----------------ccccc-c-cccCccccchhhhhhhhhcccC
Confidence 99999999999999999999999987 888765 32322 2 245788888763 467
Q ss_pred CCccEEcCCchHHHHHHHHHHHHHh
Q 004972 175 GLIDAVVTSEELLKVSRLWALDIAA 199 (721)
Q Consensus 175 Glv~~vv~~~~l~~~a~~~a~~~a~ 199 (721)
|.+|.++++++ .+.+.++++.+
T Consensus 197 G~~d~v~~de~---~a~~~ir~~ls 218 (493)
T PF01039_consen 197 GVVDYVVDDEE---DALAQIRRLLS 218 (493)
T ss_dssp SSSSEEESSHH---HHHHHHHHHHH
T ss_pred CCceEEEechH---HHHHHHHHhhc
Confidence 99999997653 34444444443
No 376
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.19 E-value=0.14 Score=51.83 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=77.1
Q ss_pred ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC----CCCcEEEecCCCCC
Q 004972 373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPA 447 (721)
Q Consensus 373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~----~~~r~ig~h~~~p~ 447 (721)
++.+ +|.++++++|++|.-.|..- ....+++++.+++++++|| +||.+++...+...+. ..-.+..+||-.=|
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 4444 45589999999999998433 1247788889999999987 5788888765554433 22346667764322
Q ss_pred CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCc
Q 004972 448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG 488 (721)
Q Consensus 448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~g 488 (721)
. ++.--.+.-...++|+++++.++.+..|+.+.++ .+..+
T Consensus 207 g-t~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs 247 (342)
T PRK00961 207 E-MKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG 247 (342)
T ss_pred C-CCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 1 1221123344568999999999999999999988 34333
No 377
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.14 E-value=0.018 Score=60.95 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=63.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++++|||+|..|...+..++.- .+ +|.+|++++++.++..+++.+.+ + -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 5899999999999998887753 33 79999999999887654433210 1 124444555 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+|+.|.+..- .++. ...+++++-|....|.
T Consensus 181 ~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 181 RDADTITSITNSDT----PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred hcCCEEEEecCCCC----cEec--HHHcCCCceEEecCCC
Confidence 99999999987433 2221 1245677766554443
No 378
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.11 E-value=0.011 Score=61.07 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=55.3
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999998 99999999988764 67765 588887653221 00 012234555 33
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 427 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~ 427 (721)
++++|+||++.| +....++..... ..+.-++..|+++...+
T Consensus 58 l~~~DvVid~t~--p~~~~~~~~~al---~~G~~vvigttG~s~~~ 98 (257)
T PRK00048 58 LADADVLIDFTT--PEATLENLEFAL---EHGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ccCCCEEEECCC--HHHHHHHHHHHH---HcCCCEEEECCCCCHHH
Confidence 567999998887 443334433332 23333333355555443
No 379
>PRK06046 alanine dehydrogenase; Validated
Probab=96.09 E-value=0.019 Score=61.62 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=60.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+.+ + -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 5899999999999999988743 43 78899999998877654432110 1 013334455 345
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+ +|+|+.|.|... .++. .+.+++++.|.+..|.
T Consensus 193 ~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 193 D-CDILVTTTPSRK----PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred h-CCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence 5 999999998533 2221 1345677776655543
No 380
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.05 E-value=0.23 Score=50.38 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=74.8
Q ss_pred ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcc---cCC-CCcEEEecCCCCC
Q 004972 373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPA 447 (721)
Q Consensus 373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~---~~~-~~r~ig~h~~~p~ 447 (721)
++.+ +|.++++++|++|.-.|..- ....+++++.+++++++|| +||.+++...+... +.+ .-.+..+||-.=|
T Consensus 127 vkVtsDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 127 LKVTTDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred ceEecCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 4444 45589999999999998433 1247788889999999987 57878777644333 332 2356667775433
Q ss_pred CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972 448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 483 (721)
..-..+=++ ....++|+++++.++.+..|+.+..+
T Consensus 205 gt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 205 EMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeec
Confidence 221222233 34568999999999999999999987
No 381
>PLN00203 glutamyl-tRNA reductase
Probab=96.03 E-value=0.0077 Score=68.19 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=55.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||+|.||..++..|...|. +|++++++.++++...+.+ . + .. -.....++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g-~~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-D-VE--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-C-Cc--------eEeecHhhHHHHHh
Confidence 589999999999999999999997 7999999998876643211 0 1 00 001111222 5578
Q ss_pred CCCEEEEcccCC-hHHHHHHHHHH
Q 004972 384 DVDMVIEAVIES-VPLKQKIFSEL 406 (721)
Q Consensus 384 ~aDlVIeavpe~-~~~k~~v~~~l 406 (721)
++|+||.|++.. +.+..+.++++
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEAL 352 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHh
Confidence 899999997532 23444555544
No 382
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.02 E-value=0.012 Score=66.43 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
++++|+|+|.+|.+++..++..|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5799999999999999999999999999999988766543211 000010 1122336789
Q ss_pred CEEEEcccCCh
Q 004972 386 DMVIEAVIESV 396 (721)
Q Consensus 386 DlVIeavpe~~ 396 (721)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999999554
No 383
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.99 E-value=0.016 Score=60.20 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=54.7
Q ss_pred eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||.|. +|.++|..|.+.|..|+++++....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 5899999987 999999999999999999987532211 23678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
||+||-|++-.- ++.. ..+++++++++..+.
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCCC
Confidence 999999997322 2222 346888988876654
No 384
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.98 E-value=0.029 Score=59.72 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=64.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
.++++|||+|..+...+..+... --+|.+|++++++.++..+.+++ .+ -.+...++. ++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHH
Confidence 35899999999999999887653 23899999999998876543221 11 123444555 67
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+++||+|+.|.+... .++. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~----P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSRE----PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCC----ceeC--HHHcCCCcEEEecCCC
Confidence 899999999987433 3332 1346788877655554
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.95 E-value=0.089 Score=52.26 Aligned_cols=126 Identities=20% Similarity=0.262 Sum_probs=74.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc---Cccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 381 (721)
++|.|||+|.+|...+..|.+.|.+|++++++.. .+.. +...+. +.... ..+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~~ 67 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGK------------IRWKQKEFEPSD 67 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCC------------EEEEecCCChhh
Confidence 6899999999999999999999999999987532 1111 112221 22211 1255
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 459 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~ 459 (721)
+.++|+||-|+. +.++...+... +..+. ++.+....+ . ..|..|. ..+++.--|.+.
T Consensus 68 l~~adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~ 126 (202)
T PRK06718 68 IVDAFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTD 126 (202)
T ss_pred cCCceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECC
Confidence 789999998765 55555554333 33333 333222211 1 1233333 334454455666
Q ss_pred CCCHHHHHHHHHHHHH
Q 004972 460 RTSAQVILDLMTVGKI 475 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~ 475 (721)
+.+|.....++.-++.
T Consensus 127 G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 127 GASPKLAKKIRDELEA 142 (202)
T ss_pred CCChHHHHHHHHHHHH
Confidence 6788777777766665
No 386
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.95 E-value=0.016 Score=60.83 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 346 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 346 (721)
+++.|||+|-+|.+++..|+..|. +|++++|++++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 479999999999999999999997 79999999988776543
No 387
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.92 E-value=0.25 Score=56.13 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=100.9
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (721)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (721)
|.-|+|. .-+++++-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+. ........+++ .++.
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~~ 385 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAYS 385 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence 3445663 3679999999999999988754 455566643333 555543221 11122333455 5678
Q ss_pred hCCCcEEEEECCcccccchHhhh----hcCEEEeeCCceEeCc--ccccCcccccccccccc----CHHHHHH-HH--Hc
Q 004972 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLV----GLSKAIE-MM--LL 162 (721)
Q Consensus 96 ~~~~p~Iaav~G~a~GgG~~lal----acD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~----G~~~a~~-l~--lt 162 (721)
+..+|.|+.|-|.++|||..-.. .+|+++|.+++.++.- |....++ +.+.+ -...+.. .+ ..
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~-----~~~~l~~~~~~~~~~~~~~~~~~ 460 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANII-----FRKDIKEAKDPAATRKQKIAEYR 460 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHH-----hhhhcccccCHHHHHHHHHHHHH
Confidence 89999999999999888653332 2899999988887763 3322221 11111 0111111 11 12
Q ss_pred CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972 163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 199 (721)
Q Consensus 163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~ 199 (721)
-+..++..+.+.|+||.|+++.+.......+.+.+..
T Consensus 461 ~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 461 EEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 2345788999999999999999888777766665433
No 388
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.92 E-value=0.026 Score=59.96 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=64.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972 305 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 381 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 381 (721)
.+.++|||+|.++......+..- + -+|.+|+++++..++...+.++ .+. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGG----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcC----------ccceeccCHHHH
Confidence 46799999999999999888753 3 4899999999998876544332 111 123445554 77
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
+++||+|+.|+|.+..+ +. .+.+++++-|....+
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 89999999999854422 21 234567776654443
No 389
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.90 E-value=0.037 Score=55.08 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=76.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec---cCccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV---LDYSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~~ 381 (721)
++|.|||+|.+|..-+..|.+.|.+|++++.+... +.. +.+.+. +... -..+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~d 66 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGG------------ITWLARCFDADI 66 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCC------------EEEEeCCCCHHH
Confidence 58999999999999999999999999999986541 111 122222 2221 11245
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 459 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~ 459 (721)
+.++|+||.|. ++.++...+..... ...+++...+.... ..|..|. ..++++--|.+.
T Consensus 67 l~~~~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~ 126 (205)
T TIGR01470 67 LEGAFLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSG 126 (205)
T ss_pred hCCcEEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECC
Confidence 78999999875 45666555554432 33344332222111 1233332 334454456666
Q ss_pred CCCHHHHHHHHHHHHHc
Q 004972 460 RTSAQVILDLMTVGKII 476 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~l 476 (721)
..+|.....++.-++.+
T Consensus 127 G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 127 GAAPVLARLLRERIETL 143 (205)
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 67777766666666553
No 390
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.87 E-value=0.026 Score=58.35 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=54.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc---
Q 004972 306 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 379 (721)
+||++||.|.+-.+.-...... |..|..+|+++++.+.+.+-+...+. +. .++++. .|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999977665554443 45788999999998877543331110 11 223332 121
Q ss_pred -cccCCCCEEEEccc--CChHHHHHHHHHHHhhCCCCeEEEe
Q 004972 380 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT 418 (721)
Q Consensus 380 -~~l~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s 418 (721)
..+.++|+|+.|.- .+.+-|.+++..|.++++++++|+.
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 34688999999874 2344899999999999999998874
No 391
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.87 E-value=0.016 Score=56.36 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=53.3
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc----cc
Q 004972 308 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----SE 381 (721)
Q Consensus 308 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~ 381 (721)
|.|+|+ |.+|..++..|.+.|++|+++.|++++++. . ..+ ..+... .+. ++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~--------~~~--------------~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-S--------PGV--------------EIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-C--------TTE--------------EEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-c--------ccc--------------ccceeeehhhhhhhhh
Confidence 789997 999999999999999999999999987554 0 000 111111 111 45
Q ss_pred cCCCCEEEEcccC---ChHHHHHHHHHHHh
Q 004972 382 FKDVDMVIEAVIE---SVPLKQKIFSELEK 408 (721)
Q Consensus 382 l~~aDlVIeavpe---~~~~k~~v~~~l~~ 408 (721)
+++||.||.+++. +....+.+++.+..
T Consensus 58 l~~~d~vi~~~~~~~~~~~~~~~~~~a~~~ 87 (183)
T PF13460_consen 58 LKGADAVIHAAGPPPKDVDAAKNIIEAAKK 87 (183)
T ss_dssp HTTSSEEEECCHSTTTHHHHHHHHHHHHHH
T ss_pred hhhcchhhhhhhhhcccccccccccccccc
Confidence 6899999999973 33344445444444
No 392
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.81 E-value=0.023 Score=56.55 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999997 89999987
No 393
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.80 E-value=0.03 Score=58.19 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=46.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc-
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 382 (721)
.||+|||+|.||..++..+.+. +.++.. ++++.. .+.... ... ..+..+++++.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~--------~~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRR--------ALG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhh--------hhc-------------cCCeeeCCHHHhc
Confidence 5899999999999999998875 556543 333221 111100 000 123445566444
Q ss_pred CCCCEEEEcccCChHHHHHHHHHH
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSEL 406 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l 406 (721)
.+.|+||+|.| ...-.++..+.
T Consensus 60 ~~~DvVve~t~--~~~~~e~~~~a 81 (265)
T PRK13303 60 QRPDLVVECAG--HAALKEHVVPI 81 (265)
T ss_pred cCCCEEEECCC--HHHHHHHHHHH
Confidence 56899999998 33334444443
No 394
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.70 E-value=0.25 Score=56.11 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH-HHHhhCCCcEEE
Q 004972 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA 103 (721)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~p~Ia 103 (721)
.-+++....+.+..+++.+.++. +-+|.|.-.| |+.+.+-. ..+... ...+. .....-..|.|+
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~--------~~l~~~-~~~~~~~~~~s~~iP~Is 159 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAV--------DALKGY-GDIFYRNTIASGVVPQIS 159 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccc--------hhhhhH-HHHHHHHHHHcCCCcEEE
Confidence 47888888999999998887654 4455554322 23332100 001111 11110 112234589999
Q ss_pred EECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHcC
Q 004972 104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKLG 175 (721)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~G 175 (721)
++.|.|+||+......||++|+.++ +.+++. |+..... .+|+.+++++. ..-|
T Consensus 160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------------GP~vv~~--~~Ge~v~~e~lGGa~~h~~~sG 220 (512)
T TIGR01117 160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------------GPQVIKT--VTGEEVTAEQLGGAMAHNSVSG 220 (512)
T ss_pred EEecCCCcHHHHHHHhcCceEEeccceEEEec-----------------ChHHHHh--hcCcccchhhcchHHHhccccc
Confidence 9999999999877779999999986 455553 2222111 35666666654 2579
Q ss_pred CccEEcCC-chHHHHHHHHHHH
Q 004972 176 LIDAVVTS-EELLKVSRLWALD 196 (721)
Q Consensus 176 lv~~vv~~-~~l~~~a~~~a~~ 196 (721)
++|.++++ ++..+.++++..-
T Consensus 221 v~d~~~~de~ea~~~~r~~ls~ 242 (512)
T TIGR01117 221 VAHFIAEDDDDCIMLIRRLLSF 242 (512)
T ss_pred eeEEecCChHHHHHHHHHHHHh
Confidence 99999854 4455555555443
No 395
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.68 E-value=0.015 Score=61.93 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++++|||+|..+..-+..++. .++ +|.+|+++++++++..++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 479999999999998887765 344 899999999998876544322 01 124555665 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+|+.|.+..... .++. ...+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEecCC
Confidence 9999999999744410 1111 2356788877665554
No 396
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.049 Score=60.71 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 341 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 341 (721)
.++|+|||.|.+|.++|..|.+.|++|+++|.+++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
No 397
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.61 E-value=0.05 Score=58.51 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=62.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 382 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 382 (721)
++++|||+|..+...+..+..- . .+|++|++++++.+...+++++ .+ -.+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence 5899999999998887766542 3 4899999999998876544321 11 023444555 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
++||+|+.|.+.... ..++. .+.+++++.|....|.
T Consensus 192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 999999999863210 01121 1346788876655554
No 398
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.60 E-value=0.37 Score=51.33 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=33.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 345 (721)
++|+|+|+|-.|..-.+.+...|.+|+.+|+++++.+.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5899999997776666666668999999999999987764
No 399
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.60 E-value=0.016 Score=63.87 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=49.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
+||.|||+|-||..++..|+..|. ++++++|+.++++...+.+ ..+ .....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~--------~~~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF--------RNA------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh--------cCC------------eEecHHHHHHHhc
Confidence 579999999999999999999995 7999999988766543211 001 01111222 5578
Q ss_pred CCCEEEEccc
Q 004972 384 DVDMVIEAVI 393 (721)
Q Consensus 384 ~aDlVIeavp 393 (721)
++|+||.|++
T Consensus 242 ~aDiVI~aT~ 251 (414)
T PRK13940 242 KADIIIAAVN 251 (414)
T ss_pred cCCEEEECcC
Confidence 8999999886
No 400
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.57 E-value=0.029 Score=60.37 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999875
No 401
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.54 E-value=0.11 Score=46.29 Aligned_cols=89 Identities=22% Similarity=0.205 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-----cc
Q 004972 308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-----SE 381 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-----~~ 381 (721)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+. |. ..+... ++. ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------cc----------ccccccchhhhHHhhcC
Confidence 6799999999999999999777999999999997775421 10 011110 111 34
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 418 (721)
+++||.||.+.+++ .....+...+....+.-.+++-
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence 68899999988754 3333333444444444556554
No 402
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.44 E-value=0.051 Score=45.91 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CCceEEEeC
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 336 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 336 (721)
++++|+|+|.+|.+++..+... +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6899999999999999999998 678999986
No 403
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.40 E-value=0.063 Score=55.36 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=64.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-cc---Cc-c
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VL---DY-S 380 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~---~~-~ 380 (721)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-+. ...++.. .+ ++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence 589999999999999999888899999999999987764211 1122221 11 22 6
Q ss_pred ccCCCCEEEEcccC-ChHHHHHHHHHHHhhCCCCeEEEe
Q 004972 381 EFKDVDMVIEAVIE-SVPLKQKIFSELEKACPPHCILAT 418 (721)
Q Consensus 381 ~l~~aDlVIeavpe-~~~~k~~v~~~l~~~~~~~~ii~s 418 (721)
.+..+|+||-+|-- ..+.=+-+.+++.+.++++++|++
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 68999999988721 111112345666777889998875
No 404
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.40 E-value=0.045 Score=49.17 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=55.3
Q ss_pred eeEEEEc----CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 306 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 306 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
++|+||| .+.+|.-+...|.+.|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999998765431 12444555543
Q ss_pred c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972 382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417 (721)
Q Consensus 382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 417 (721)
. ...|+++.++| .+...++++++... ....+++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence 4 78999999999 88888898888766 3344443
No 405
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.38 E-value=0.022 Score=62.61 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=34.4
Q ss_pred eeEEEEcCCCCcHHH-HHHHHHCCCceEEEeCCHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 306 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~ 345 (721)
+||.++|+|.||++. +..|.+.|++|+++|++++.++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 479999999999855 8888999999999999888766653
No 406
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.33 E-value=0.041 Score=57.27 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=37.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 347 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~ 347 (721)
++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999995 799999999998876543
No 407
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.24 E-value=0.026 Score=61.44 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 345 (721)
++|.|||+|-||...|.+|..+| ..|++.+|+.+++....
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 58999999999999999999999 58999999999987654
No 408
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.22 E-value=0.024 Score=62.39 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-C-ceEEEeCCHHHHHHHH
Q 004972 308 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGI 345 (721)
Q Consensus 308 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 345 (721)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987754
No 409
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.17 E-value=0.061 Score=55.90 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.1
Q ss_pred eeEEEEc-CCCCcHHHHHHHHH-CCCceE-EEeCC
Q 004972 306 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN 337 (721)
Q Consensus 306 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~ 337 (721)
.||+|+| +|.||..++..+.. .+++++ ++|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5899999 59999999999986 477765 57743
No 410
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.15 E-value=0.11 Score=60.64 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=63.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----- 379 (721)
.+|.|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+ .|. ..+.. .++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~~ 459 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGY----------KVYYGDATQLELLRA 459 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCC----------eEEEeeCCCHHHHHh
Confidence 57999999999999999999999999999999999887532 110 00111 1111
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
..+++||.||.+++++.. ...+...+.+..++-.|++-..+
T Consensus 460 agi~~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 460 AGAEKAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCccCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 346899999999986544 33444445555555566654333
No 411
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.07 E-value=0.13 Score=57.91 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 344 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 344 (721)
++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 379999999999999999999999999999999987664
No 412
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.041 Score=57.13 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=54.2
Q ss_pred eeEEEEcCCCC-cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|+|||.|.. |.++|..|.+.|..|+++.... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 58999999877 9999999999999999876422 122 3468
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+||+||.|++-. .++.. ..+++++++++....
T Consensus 201 ~ADIVV~avG~~-----~~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 201 QADIVVAAVGKR-----NVLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred hCCEEEEcCCCc-----CccCH--HHcCCCCEEEEcccc
Confidence 899999999822 23332 668899998875543
No 413
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.03 E-value=0.075 Score=53.95 Aligned_cols=160 Identities=12% Similarity=0.136 Sum_probs=82.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc----C--ceec---
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK----M--LKGV--- 376 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~--i~~~--- 376 (721)
||.|||+|-.|+.++..|+..|. +++++|.+.=....... +.+-..-.-|+-..+.+.+.+. . +...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnR---Qflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR---QFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcc---ccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 68999999999999999999997 78899976322111100 0000000111111111111111 1 1110
Q ss_pred ----cCc--cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC-CCCCHHHHhcccCCCCcEEEecCCCCCCC
Q 004972 377 ----LDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT-STIDLNIVGEKTSSQDRIIGAHFFSPAHV 449 (721)
Q Consensus 377 ----~~~--~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t-s~~~i~~l~~~~~~~~r~ig~h~~~p~~~ 449 (721)
.+. +.+++.|+||.|+- +.+. +..+.+..... +..++... .+.. ....-..+....+...++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~-G~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFK-GNAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCc-eEEEEEcCCCCCCcccCCCCCCCC
Confidence 111 33688999999975 4443 44444433222 33344322 2221 111111111122333344444445
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHH
Q 004972 450 MPLLEIVRTERTSAQVILDLMTVGK 474 (721)
Q Consensus 450 ~~lvEiv~~~~t~~e~~~~~~~l~~ 474 (721)
.|...+-..|.+.+..+++++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 6778888888888888999888876
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.03 E-value=0.047 Score=58.73 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999998 899999874
No 415
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.03 E-value=0.13 Score=59.73 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=61.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-----
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----- 379 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----- 379 (721)
.+|.|+|.|.+|..+|..|.+.|++|+++|.|+++++.+.+ .|. ..+... ++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~----------~~i~GD~~~~~~L~~ 476 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGI----------RAVLGNAANEEIMQL 476 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCC----------eEEEcCCCCHHHHHh
Confidence 57999999999999999999999999999999998877532 110 001110 111
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 418 (721)
..+++||.||.++++|.+... +...+....+.-.|++-
T Consensus 477 a~i~~a~~viv~~~~~~~~~~-iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 477 AHLDCARWLLLTIPNGYEAGE-IVASAREKRPDIEIIAR 514 (558)
T ss_pred cCccccCEEEEEcCChHHHHH-HHHHHHHHCCCCeEEEE
Confidence 346799999999987665432 33334444343445543
No 416
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.02 E-value=0.047 Score=59.65 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=53.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHC--CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972 305 VRKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 380 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 380 (721)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 36899999999999999888763 23 899999999998876544332110 00 014445555 6
Q ss_pred ccCCCCEEEEccc
Q 004972 381 EFKDVDMVIEAVI 393 (721)
Q Consensus 381 ~l~~aDlVIeavp 393 (721)
++++||+|+.|.+
T Consensus 220 av~~ADIVvtaT~ 232 (379)
T PRK06199 220 VVRGSDIVTYCNS 232 (379)
T ss_pred HHcCCCEEEEccC
Confidence 7899999999886
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.00 E-value=0.089 Score=59.41 Aligned_cols=40 Identities=25% Similarity=0.123 Sum_probs=37.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 345 (721)
.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999988764
No 418
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.91 E-value=0.085 Score=57.02 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred ceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--c
Q 004972 305 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 380 (721)
Q Consensus 305 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 380 (721)
|.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+...+ ..... .+. .... .++. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~~~~--~~~----------~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VHPHL--RGL----------VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hCccc--ccc----------cCce-eecCCHH
Confidence 469999997 99999999999876 6677554333322111110 00000 000 0001 1112 1
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
...++|+|+.|+|.. .-.++..++. ..++.|+++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~--~~~~~v~~a~---~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHG--VSMDLAPQLL---EAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcH--HHHHHHHHHH---hCCCEEEECCcccCCC
Confidence 346799999999954 3334444432 4678889999887663
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.84 E-value=0.19 Score=56.60 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 345 (721)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 47899999999999999999999999999999999877653
No 420
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.84 E-value=0.086 Score=59.37 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 345 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 345 (721)
.|+.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999877653
No 421
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.83 E-value=0.77 Score=52.65 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH--HHHhhCCCcEE
Q 004972 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIV 102 (721)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~p~I 102 (721)
..+++....+.+..+++.+.+.. +-+|.|.-.++. .+.+ ..+ .......+.+++. ..+.....|.|
T Consensus 142 GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGa-----rl~~-----q~e-~~~~~~~~g~if~~~~~ls~~~VP~I 209 (569)
T PLN02820 142 GGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGA-----NLPR-----QAE-VFPDRDHFGRIFYNQARMSSAGIPQI 209 (569)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCc-----CCcc-----ccc-ccchHhHHHHHHHHHHHHhCCCCCEE
Confidence 48899999999999999887653 456666543333 2211 000 0000001112221 12445679999
Q ss_pred EEECCcccccchHhhhhcCEEEeeC-CceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHHH-------Hc
Q 004972 103 AAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGW-------KL 174 (721)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~-------~~ 174 (721)
++|.|.|.|||......||++|+++ ++.+++. |+..... .+|+.+++++.- .-
T Consensus 210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------------GP~vV~~--~~Ge~v~~eeLGGa~~h~~~s 270 (569)
T PLN02820 210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------------GPPLVKA--ATGEEVSAEDLGGADVHCKVS 270 (569)
T ss_pred EEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------------CHHHHHh--hcCcccCHHHhCCHHHhcccc
Confidence 9999999999999999999999985 4656553 2222221 456777776652 46
Q ss_pred CCccEEcCCchHHHHHHHHHHHHHh
Q 004972 175 GLIDAVVTSEELLKVSRLWALDIAA 199 (721)
Q Consensus 175 Glv~~vv~~~~l~~~a~~~a~~~a~ 199 (721)
|.+|.++++| .++...++++.+
T Consensus 271 Gv~d~~~~de---~~a~~~~R~lls 292 (569)
T PLN02820 271 GVSDHFAQDE---LHALAIGRNIVK 292 (569)
T ss_pred cccccccCch---HHHHHHHHHHHH
Confidence 8888888654 334444444443
No 422
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.084 Score=55.19 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=51.6
Q ss_pred eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||.|. .|.++|..|.+.|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997432211 22478
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
||+||-|++...- +. .+.+++++++++..
T Consensus 203 aDIvI~AtG~~~~-----v~--~~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPEL-----IK--KDWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCc-----CC--HHHcCCCCEEEEEE
Confidence 9999999952221 11 13467888887543
No 423
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.78 E-value=0.17 Score=51.17 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=30.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCc---eEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 337 (721)
+||.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999975 9999999
No 424
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.78 E-value=0.042 Score=45.62 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 341 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 341 (721)
||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 425
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.75 E-value=0.092 Score=56.64 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=56.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh-hcCceeccCc-cc
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~ 381 (721)
.||+|+|+|.||..++..+... +++|+ +.|.+++......... .++ -.+... ...... -..+....++ +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988764 56766 4555544333221100 000 000000 000000 0124444444 34
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+.++|+||+|.|.. .-.+... .+++.++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~--~~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGG--VGAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCch--hhHHHHH---HHHHCCCEEEEcCCC
Confidence 57899999999843 3334333 333445666666664
No 426
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.68 E-value=0.025 Score=62.73 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 338 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 338 (721)
|.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3689999999999999999999999999999975
No 427
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.16 Score=53.55 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=80.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCc---eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
.||||+|+ |.+|.-+...|.+..++ +.++-.....=++... ... ..+ .-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~-~~~---------~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGG-KSI---------GVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccC-ccc---------cCccccccccc
Confidence 58999997 99999999999997543 4444433322111000 000 000 00111233455
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee---EEecC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT 458 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lv---Eiv~~ 458 (721)
.+++|+|+-|.+ .+.-+++..++. +.++++++|+|......=.- +-+-..||-++...- -|+.+
T Consensus 64 ~~~~Divf~~ag--~~~s~~~~p~~~---~~G~~VIdnsSa~Rm~~DVP--------LVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAG--GSVSKEVEPKAA---EAGCVVIDNSSAFRMDPDVP--------LVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCc--hHHHHHHHHHHH---HcCCEEEeCCcccccCCCCC--------EecCCcCHHHHHhhhhCCCEEEC
Confidence 679999999998 444456655554 46799999999866542111 111112222111100 14444
Q ss_pred CC-CCHHHHHHHHHHHHHcCCeeEEE
Q 004972 459 ER-TSAQVILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 459 ~~-t~~e~~~~~~~l~~~lG~~~v~v 483 (721)
++ +....+-.+.++.+..+-.-+++
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEE
Confidence 44 34566677778888777544443
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.60 E-value=0.14 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
||.|||+|.+|+.++..|++.|+ +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 79999976
No 429
>PRK06153 hypothetical protein; Provisional
Probab=94.57 E-value=0.066 Score=57.66 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999999997 89999976
No 430
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.50 E-value=0.28 Score=46.62 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 337 (721)
++|.|||+|.+|...+..|...|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 68999999999999999999999999999643
No 431
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.46 E-value=0.024 Score=55.50 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh
Q 004972 617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV 671 (721)
Q Consensus 617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~ 671 (721)
.++..||+.++++||.-+++..||. +..|+|.+|..|+|.+-.-.||++.+.+-
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 4789999999999999999999999 89999999999999777778999988654
No 432
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.40 E-value=0.051 Score=56.93 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 346 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 346 (721)
++|.|+|+|-.|.+++..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988776543
No 433
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.25 E-value=0.26 Score=57.76 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=61.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc----
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---- 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---- 379 (721)
-++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+ .|. ..+.. .++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~ 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999999887632 110 00111 1121
Q ss_pred -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972 380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417 (721)
Q Consensus 380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 417 (721)
..+++||+||.++.++ +....+...+.++.++-.|++
T Consensus 459 ~agi~~A~~vvv~~~d~-~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 459 SAGAAKAEVLINAIDDP-QTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred hcCCCcCCEEEEEeCCH-HHHHHHHHHHHHhCCCCeEEE
Confidence 3467899999998644 333344444555444444554
No 434
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.17 E-value=0.2 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 346 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 346 (721)
+|.|+|+|.+|...++.+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999999888888885 78889999999988743
No 435
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.17 E-value=1.1 Score=45.51 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=101.5
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (721)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (721)
++...++-. -.-.+..-.-+.+..+++.+..+ .+..|+++.+|+ +-+.|=.- . .-.+. .....+ ..
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l----S-LMQMa-ktsaAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL----S-LMQMA-KTSAAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH----H-HHHHH-HHHHHH-HH
Confidence 444444443 23567777788888888888755 477888887653 22222000 0 00011 112334 45
Q ss_pred HhhCCCcEEEEECCccccc-chHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHHH
Q 004972 94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 172 (721)
Q Consensus 94 l~~~~~p~Iaav~G~a~Gg-G~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~ 172 (721)
+..-..|.|+.+..++.|| ...+++..|+.||-+.|.+||..-++= -+.....++.. --+++-.+
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI----EQTire~LPeg----------fQ~aEfLl 256 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI----EQTIREKLPEG----------FQTAEFLL 256 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh----hhhhcccCCcc----------hhhHHHHH
Confidence 7788999999999999998 469999999999999988887633210 11111111111 12577788
Q ss_pred HcCCccEEcCCchHHHHHHHHHHHHHhcC
Q 004972 173 KLGLIDAVVTSEELLKVSRLWALDIAARR 201 (721)
Q Consensus 173 ~~Glv~~vv~~~~l~~~a~~~a~~~a~~~ 201 (721)
+.|+||.||+..++......+...+...+
T Consensus 257 ehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 257 EHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred HcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 99999999999988887776665555443
No 436
>PLN03075 nicotianamine synthase; Provisional
Probab=94.16 E-value=0.38 Score=50.32 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=68.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc--
Q 004972 305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 379 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 379 (721)
-++|+.||+|..|.+-...++.. +-.++.+|++++.++.+++.+.+. .+ + ..++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 47899999999887655555443 346999999999998876543210 11 1 0223332 111
Q ss_pred --cccCCCCEEEEcccC--ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 380 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 380 --~~l~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
....+.|+|+..+-- +..-++.+++.+.+.++++.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235689999988632 23678899999999999998887544
No 437
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=94.14 E-value=0.49 Score=49.45 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=63.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+++||+|.|.+|+-.|.++..-|..|+.+|.-.-.-.. ... .+...+-.+.+..|
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~------------~a~-------------gvq~vsl~Eil~~A 201 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALA------------EAF-------------GVQLVSLEEILPKA 201 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHH------------Hhc-------------cceeeeHHHHHhhc
Confidence 57999999999999999999999999999974322111 011 13333333678899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 417 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 417 (721)
|+|=.-+|-.++.++-+-.+....++++.-|+
T Consensus 202 DFitlH~PLtP~T~~lin~~tfA~mKkGVriI 233 (406)
T KOG0068|consen 202 DFITLHVPLTPSTEKLLNDETFAKMKKGVRII 233 (406)
T ss_pred CEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence 99999999777776666566666678887665
No 438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.00 E-value=0.17 Score=57.46 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972 292 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 339 (721)
Q Consensus 292 ~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 339 (721)
.|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3444444432 3356899999999999999999999999999997653
No 439
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.95 E-value=0.37 Score=48.37 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=73.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cC--ccc
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD--YSE 381 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~ 381 (721)
++|.|||+|.++..=+..|.+.|-+|+++..+-. .+.. +.+.+. ++.. .+ .+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~------------i~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGN------------LKLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCC------------EEEEeCCCChHH
Confidence 4899999999999999999999999999976532 1111 122222 2221 12 255
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 459 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~ 459 (721)
+.++++||.|+. |.++-+.+.+ .++...+++.+...... ..|+.|. ..++++--|.+.
T Consensus 83 l~g~~LViaATd-D~~vN~~I~~----~a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIATD-DEKLNNKIRK----HCDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECCC-CHHHHHHHHH----HHHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence 789999999864 6666555544 33332333332222111 1233443 333454455665
Q ss_pred CCCHHHHHHHHHHHHH
Q 004972 460 RTSAQVILDLMTVGKI 475 (721)
Q Consensus 460 ~t~~e~~~~~~~l~~~ 475 (721)
+.+|.....++.-++.
T Consensus 143 G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 143 GGSPKTSVFIGEKVKN 158 (223)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 6677666665555543
No 440
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.87 E-value=0.14 Score=55.29 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=77.7
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcc-
Q 004972 306 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYS- 380 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 380 (721)
+||+|||+ |.+|..+...|.+. +++++ +++.+...-+... ..+..+ .+.. .+.+. .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~~~l--~~~~----------~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVHPHL--RGLV----------DLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhCccc--cccC----------CceeecCCHHH
Confidence 37999998 99999999999976 66777 5565543211111 000000 0000 01111 1222
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhcccCC----C----CcEEEecCCCCCCC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSS----Q----DRIIGAHFFSPAHV 449 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~~~----~----~r~ig~h~~~p~~~ 449 (721)
.+.++|+||.|+|.. .-.++..++. ..++.|+++++...+.. ....... + +-..|+-=+++..+
T Consensus 65 ~~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i 139 (346)
T TIGR01850 65 IAEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEI 139 (346)
T ss_pred hhcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHh
Confidence 235899999999944 3445545443 35788889888765542 1111111 0 11122222232211
Q ss_pred CCeeEEecCCCCCH-HHHHHHHHHHHH
Q 004972 450 MPLLEIVRTERTSA-QVILDLMTVGKI 475 (721)
Q Consensus 450 ~~lvEiv~~~~t~~-e~~~~~~~l~~~ 475 (721)
....+|..+++.+ ..+-.+.+|.+.
T Consensus 140 -~~~~iianPgC~~t~~~l~L~PL~~~ 165 (346)
T TIGR01850 140 -KGARLIANPGCYPTATLLALAPLLKE 165 (346)
T ss_pred -CCCcEEEcCCcHHHHHHHHHHHHHHc
Confidence 1133676666644 455667788775
No 441
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.86 E-value=0.17 Score=54.49 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=48.3
Q ss_pred CceeEEEEcCCCC-cHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972 304 GVRKVAVIGGGLM-GSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 379 (721)
Q Consensus 304 ~~~kI~VIG~G~m-G~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 379 (721)
++.||||||+|.+ +...+..+...+. -|-++|+++++++...+.+ +.-...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCH
Confidence 3568999999855 4567777777653 4668899999877653211 111235555
Q ss_pred c-cc--CCCCEEEEcccCChHH
Q 004972 380 S-EF--KDVDMVIEAVIESVPL 398 (721)
Q Consensus 380 ~-~l--~~aDlVIeavpe~~~~ 398 (721)
+ .+ .+.|+|++|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 3 33 3479999999966554
No 442
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.85 E-value=0.17 Score=44.32 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=49.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-cccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~l~ 383 (721)
++|.|||.|.+|..=+..|.+.|.+|+++..+.+..+ + .+... ..+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 6899999999999999999999999999999861111 1 11111 112 5688
Q ss_pred CCCEEEEcccCChHHHHHHHHHH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSEL 406 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l 406 (721)
++|+||.|.. +..+.+.+.+..
T Consensus 60 ~~~lV~~at~-d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAATD-DPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-SS--HHHHHHHHHHH
T ss_pred hheEEEecCC-CHHHHHHHHHHH
Confidence 9999997764 566666655543
No 443
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.84 E-value=0.085 Score=55.58 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 339 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 339 (721)
+++.|+|+|-.|.+++..|+..|.. |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5799999999999999999999986 999999973
No 444
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.81 E-value=0.15 Score=48.44 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=48.4
Q ss_pred eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||-+ ..|.+++..|.+.|..|++.+..-+.++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999986 6899999999999999999886543222 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
||+||.|+.-.-.++ ...+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence 999999997333322 24578999998765543
No 445
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.76 E-value=0.16 Score=51.57 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 888998653
No 446
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.65 E-value=0.081 Score=57.82 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=61.8
Q ss_pred CceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972 304 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 381 (721)
Q Consensus 304 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 381 (721)
..+||+|+|+ |..|..+...|..+ +++|+.+..+.+.-+... ..... +..+... .+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~~---------~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDLP---------NLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCcccc---------cee-cCCHHH
Confidence 4569999998 99999999999988 779998887544321111 00000 0001000 000 111233
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~ 426 (721)
++++|+||.|+| ...-.++...+ ..++.|+++++.....
T Consensus 102 ~~~~DvVf~Alp--~~~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLP--HGTTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCC--HHHHHHHHHHH----hCCCEEEEcCchhccC
Confidence 688999999999 44444555543 3568888988875544
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.43 Score=54.33 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 340 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 340 (721)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 448
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.60 E-value=0.41 Score=50.28 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=54.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc---
Q 004972 306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS--- 380 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 380 (721)
.||+|||+|.+|...+..+.+. +.++. ++|++++....... .+.|. -...++++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi------------~~~~~~ie~LL 63 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGV------------ATSAEGIDGLL 63 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCC------------CcccCCHHHHH
Confidence 4799999999999988777754 55654 78898864321111 01111 00112221
Q ss_pred ---ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 381 ---EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 381 ---~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
.+.+.|+|+++.|.. .-.+.... ..+.++.++++++..
T Consensus 64 ~~~~~~dIDiVf~AT~a~--~H~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 64 AMPEFDDIDIVFDATSAG--AHVRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred hCcCCCCCCEEEECCCHH--HHHHHHHH---HHHcCCeEEECCccc
Confidence 236799999999843 33333333 345677788877643
No 449
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.41 Score=54.22 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.2
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 340 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 340 (721)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3568999999999999999999999999999987543
No 450
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.55 E-value=0.19 Score=52.28 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=53.0
Q ss_pred eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||.| ..|.++|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 589999998 8999999999999999999865332211 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 421 (721)
||+||-|+.-.--+. ..++++++++++...
T Consensus 201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi 230 (285)
T PRK14191 201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI 230 (285)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence 999999996322222 235689998886543
No 451
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.54 E-value=0.26 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999997 799999754
No 452
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.54 E-value=0.15 Score=52.75 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.+|.|+|+|.+|+.+|..|++.|. +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 479999999999999999999994 899999774
No 453
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=93.52 E-value=2.4 Score=43.41 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=97.8
Q ss_pred CCceeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee---c
Q 004972 303 RGVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---V 376 (721)
Q Consensus 303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~ 376 (721)
.+.-||+|+|+ |-+|.++...|..+-. +..+||+.... -... +-..++. ...+.. .
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVaa----------DlSHI~T------~s~V~g~~g~ 87 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVAA----------DLSHINT------NSSVVGFTGA 87 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--cccc----------cccccCC------CCceeccCCh
Confidence 34569999997 9999999998876643 78899986321 0000 0011110 011111 1
Q ss_pred cCc-cccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEE-EecC--CCCCHH-HHhcc--cCCC
Q 004972 377 LDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL-ATNT--STIDLN-IVGEK--TSSQ 435 (721)
Q Consensus 377 ~~~-~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii-~s~t--s~~~i~-~l~~~--~~~~ 435 (721)
..+ +++++||+||+-. |- |..+.+.+...+.+.|+.-.|. +||. |+.|+. ++... ...|
T Consensus 88 ~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydp 167 (345)
T KOG1494|consen 88 DGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDP 167 (345)
T ss_pred hHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCc
Confidence 122 5689999999643 32 4446666666777777654433 4544 455553 33322 2356
Q ss_pred CcEEEecC---------------CCCCC--CC------CeeEEecC-------CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972 436 DRIIGAHF---------------FSPAH--VM------PLLEIVRT-------ERTSAQVILDLMTVGKIIKKVPVVVGN 485 (721)
Q Consensus 436 ~r~ig~h~---------------~~p~~--~~------~lvEiv~~-------~~t~~e~~~~~~~l~~~lG~~~v~v~d 485 (721)
.|+.|.-- .+|.. -. ..++|+|- ...+++.++.+..=.+.-|-.+|-.+.
T Consensus 168 kklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKa 247 (345)
T KOG1494|consen 168 KKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKA 247 (345)
T ss_pred cceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEecc
Confidence 67777653 12311 00 11223321 122566677777666777777777788
Q ss_pred CCchhhhhhhh
Q 004972 486 CTGFAVNRAFF 496 (721)
Q Consensus 486 ~~gfi~nRl~~ 496 (721)
..|.....+-+
T Consensus 248 GaGSATLSMAy 258 (345)
T KOG1494|consen 248 GAGSATLSMAY 258 (345)
T ss_pred CCCchhhhHHH
Confidence 88766655543
No 454
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.35 E-value=0.2 Score=51.08 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=54.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCC-----------CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc-
Q 004972 306 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 373 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i- 373 (721)
.||.|||+|-.|+.++..|++.| .+++++|.+.=..... .+.+-....-|+-..+.+.+.+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL----nRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV----GRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh----hcccCChhHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999874 2889999753221111 1111111112222222222222211
Q ss_pred ----eecc-C---ccccCCCCEEEEcccCChHHHHHHHHHHHh
Q 004972 374 ----KGVL-D---YSEFKDVDMVIEAVIESVPLKQKIFSELEK 408 (721)
Q Consensus 374 ----~~~~-~---~~~l~~aDlVIeavpe~~~~k~~v~~~l~~ 408 (721)
.... . .+.+.++|+||.|+- +...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1111 1 123567999999984 67777676666544
No 455
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.33 E-value=0.2 Score=54.53 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 456
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.31 E-value=0.26 Score=45.77 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=54.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|+|- ...|.++|..|.+.|..|++++.+-..++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999997 66799999999999999999986432211 34688
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
||+||.++.-...++ .+.+++++++++....
T Consensus 72 ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVP-------TEWIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccC-------HHHcCCCCEEEEcCCC
Confidence 999999997443332 2357899988865443
No 457
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.31 E-value=1.1 Score=50.12 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (721)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa 104 (721)
.-++..-..+.+..+.+.+.++....+.+..+.| +.+.+=.. ....+.+.+.+. ..+... .|.|++
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~-----~l~g~g~iF~~~--a~~Sg~-IPqIsv 169 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVP-----SLAGYGRIFYRN--ARASGV-IPQISV 169 (526)
T ss_pred cccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCcc-----ccccchHHHHHH--HHhccC-CCEEEE
Confidence 4677776777777777777765444444444433 33322100 011111111111 124445 999999
Q ss_pred ECCcccccchHhhhhcCEEEeeCCc-eEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHH-------HHHcCC
Q 004972 105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEE-------GWKLGL 176 (721)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a-~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~e-------A~~~Gl 176 (721)
|.|.|.|||..+...||++|+.+++ ++.+. |+...+ ..||+.+++++ +..-|.
T Consensus 170 v~G~c~gGgaY~pal~D~~imv~~~~~mflt-----------------GP~~ik--~vtGe~V~~e~LGGa~vh~~~sGv 230 (526)
T COG4799 170 VMGPCAGGGAYSPALTDFVIMVRDQSYMFLT-----------------GPPVIK--AVTGEEVSAEELGGAQVHARKSGV 230 (526)
T ss_pred EEecCcccccccccccceEEEEcCCccEEee-----------------CHHHHH--hhcCcEeehhhccchhhhcccccc
Confidence 9999999999999999999999873 33322 222111 23677776664 234488
Q ss_pred ccEEcCCchHHHHHHHHHHHHHhc
Q 004972 177 IDAVVTSEELLKVSRLWALDIAAR 200 (721)
Q Consensus 177 v~~vv~~~~l~~~a~~~a~~~a~~ 200 (721)
+|.+.+.| ..|.++++++.+.
T Consensus 231 a~~~a~dd---~~Ai~~vr~~lsy 251 (526)
T COG4799 231 ADLLAEDD---EDAIELVRRLLSY 251 (526)
T ss_pred eeeeecCH---HHHHHHHHHHHHh
Confidence 88887543 4556666666554
No 458
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.30 E-value=0.063 Score=58.28 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.||.|||+|-.|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999864
No 459
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.29 E-value=0.25 Score=50.05 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.||.|+|+|-+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999997 899999764
No 460
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.29 E-value=0.25 Score=54.56 Aligned_cols=162 Identities=13% Similarity=0.053 Sum_probs=81.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC------ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc----C--ce
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK----M--LK 374 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~--i~ 374 (721)
||.|||+|..|+.++..|+..|. +++++|.+.=....... +.+-..-.-|+-..+.+.+.+. . +.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnR---QfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNR---QFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCc---CccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 68999999999999999999998 89999975322111100 0000000111111111111111 1 11
Q ss_pred ecc-C----------ccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE-ecCCCCCHHHHhcccCCCCcEEEec
Q 004972 375 GVL-D----------YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAH 442 (721)
Q Consensus 375 ~~~-~----------~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~i~~l~~~~~~~~r~ig~h 442 (721)
... . .+-+++.|+||.|+- +.+....+-+....+ +..++ +.+.+.. ....-..+.-...-...
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~-G~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTK-GNTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEecccce-eEEEEEeCCCCCCccCC
Confidence 110 0 122577999999974 455443333322222 23333 3333221 11111111111111222
Q ss_pred CCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc
Q 004972 443 FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 476 (721)
Q Consensus 443 ~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~l 476 (721)
...|....|.+++-.-+...+-.+++++.+++.+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 2233345677788888888899999999998875
No 461
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.24 E-value=0.19 Score=55.17 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.||.|||+|-.|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999998 79999987
No 462
>PRK08223 hypothetical protein; Validated
Probab=93.22 E-value=0.24 Score=51.57 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
.+|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999997 789999764
No 463
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.22 E-value=0.16 Score=52.15 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.||.|||+|..|+.++..|+..|. +++++|.+
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 589999999999999999999997 78999876
No 464
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.20 E-value=1.5 Score=43.76 Aligned_cols=130 Identities=23% Similarity=0.228 Sum_probs=78.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH-HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||.|..|.-=+..|++.|-+|+++..+. +.+.. +...+.+.. +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999999876 22222 233332221 111222355677
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCCCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 462 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~~t~ 462 (721)
+++||.|+. |..+.+.+++...+. .+++ |...-+ +. .+|+.|. ...++.--|.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~p-----------~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDDP-----------EL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCCc-----------cc---CceecceeeccCCeEEEEECCCCC
Confidence 999999886 667766666554433 3333 332211 11 2344443 334555556666667
Q ss_pred HHHHHHHHHHHHH
Q 004972 463 AQVILDLMTVGKI 475 (721)
Q Consensus 463 ~e~~~~~~~l~~~ 475 (721)
|-....++.-.+.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7766666665554
No 465
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.16 E-value=0.35 Score=47.12 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=57.3
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec--cC----
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 378 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 378 (721)
++|.|||- ...|.++|..|.+.|..|+++|.+--..-. ..+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 68999997 566999999999999999999865433110 00000 00001 12
Q ss_pred c-cccCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972 379 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 423 (721)
Q Consensus 379 ~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~ 423 (721)
+ +.+++||+||.|++-.-- ++. +.+++++++++.....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence 2 457999999999973322 232 3567999998766543
No 466
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=0.31 Score=50.50 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=54.7
Q ss_pred eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||-+ ..|.++|..+...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 589999998 8899999999999999999987654322 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
||+||-|++-..-++. .++++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence 9999999972222222 236899999875544
No 467
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.99 E-value=0.17 Score=53.14 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 339 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 339 (721)
+++.|||+|-.+.+++..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 479999999999999999999887 8999999965
No 468
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.96 E-value=0.084 Score=58.62 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 339 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 339 (721)
+|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 469
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.96 E-value=0.3 Score=54.13 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=64.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHC---CC----ceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972 306 RKVAVIGG-GLMGSGIATAHILN---NI----YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 375 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 375 (721)
-+|+|-|+ |.+|-++...+++. |. .++++|+ +.+.++...-.+.+....+ +..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence 37999997 99999999999874 42 5789999 5666554433333221111 122333
Q ss_pred -ccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCC-CeEEEecCCC
Q 004972 376 -VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPP-HCILATNTST 422 (721)
Q Consensus 376 -~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~-~~ii~s~ts~ 422 (721)
+++++++++||+||.+.-- +..+.+.+.+.|.++.++ ..|++..|..
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNP 252 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTF 252 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCc
Confidence 4456899999999987621 334555666667777762 4455544443
No 470
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.94 E-value=0.23 Score=51.66 Aligned_cols=39 Identities=21% Similarity=0.021 Sum_probs=35.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 344 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 344 (721)
+++.|+|+|-.+.+++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999887664
No 471
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.93 E-value=1.7 Score=45.24 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=55.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHH-hhcCceeccCccccC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~l~ 383 (721)
.+++|.|+|.+|.+.++....+|- +++.+|+|+++.+.+++- -...-+.+.+... ..+.|.--++ .
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f--------GaTe~iNp~d~~~~i~evi~EmTd----g 261 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF--------GATEFINPKDLKKPIQEVIIEMTD----G 261 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc--------CcceecChhhccccHHHHHHHHhc----C
Confidence 479999999999999999988885 899999999998887531 0111111111100 0011111111 5
Q ss_pred CCCEEEEcccCChHHHHHHHHH
Q 004972 384 DVDMVIEAVIESVPLKQKIFSE 405 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~ 405 (721)
+.|+-+||+- ++++.++-+..
T Consensus 262 GvDysfEc~G-~~~~m~~al~s 282 (375)
T KOG0022|consen 262 GVDYSFECIG-NVSTMRAALES 282 (375)
T ss_pred CceEEEEecC-CHHHHHHHHHH
Confidence 7899999986 56655555444
No 472
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.91 E-value=0.2 Score=54.02 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=79.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCce---EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Ccc
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 380 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 380 (721)
+||+|+|+ |..|..+...|.+.||++ ....++.+.-+... . .+ ..+...+ +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence 58999997 999999999999988864 55654433211110 0 01 0122211 113
Q ss_pred ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe--eEEecC
Q 004972 381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT 458 (721)
Q Consensus 381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l--vEiv~~ 458 (721)
.+.++|+||.|+| ...-+++..++. ..++.|+++++...... . .| .++.-.|+..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g--~g~s~~~~~~~~---~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAG--GSVSKKYAPKAA---AAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCC--hHHHHHHHHHHH---hCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 3578999999998 555556655543 45678888887654432 0 11 22222332222111 025665
Q ss_pred CCCCHH-HHHHHHHHHHHcCCeeEEE
Q 004972 459 ERTSAQ-VILDLMTVGKIIKKVPVVV 483 (721)
Q Consensus 459 ~~t~~e-~~~~~~~l~~~lG~~~v~v 483 (721)
+.+... ..-.+.++.+..+-..+++
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 555443 4455666766666544444
No 473
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.85 E-value=0.31 Score=50.68 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
++|.|||-|. .|.++|..|.+.|..|+++...-..++ +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 5899999977 899999999999999999986422111 34688
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 420 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 420 (721)
||+||-++.-.-- +. ..++++++++++..
T Consensus 203 ADIvi~avG~p~~-----v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGF-----IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCccc-----cc--HHHcCCCcEEEEcc
Confidence 9999999941122 22 15678999998755
No 474
>PRK08328 hypothetical protein; Provisional
Probab=92.84 E-value=0.3 Score=49.65 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 339 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 339 (721)
.||.|||+|-.|+.++..|++.|. +++++|.+.-
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 479999999999999999999997 7999997643
No 475
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.84 E-value=0.2 Score=47.98 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=51.2
Q ss_pred CceeEEEEcCCCCcHHHHHH-HH-HCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972 304 GVRKVAVIGGGLMGSGIATA-HI-LNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 380 (721)
Q Consensus 304 ~~~kI~VIG~G~mG~~iA~~-la-~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 380 (721)
++.+|.|||+|++|.+++.. +. +.|+++ -++|.+++.+-.- -+.+. +.-.++++
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-------------~~~v~----------V~~~d~le 139 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-------------IGDVP----------VYDLDDLE 139 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-------------cCCee----------eechHHHH
Confidence 46799999999999999963 33 567765 5899999864321 01011 11112221
Q ss_pred -cc--CCCCEEEEcccCChHHHHHHHHHHHh
Q 004972 381 -EF--KDVDMVIEAVIESVPLKQKIFSELEK 408 (721)
Q Consensus 381 -~l--~~aDlVIeavpe~~~~k~~v~~~l~~ 408 (721)
-+ .+.|+.|+||| ....+++...|.+
T Consensus 140 ~~v~~~dv~iaiLtVP--a~~AQ~vad~Lv~ 168 (211)
T COG2344 140 KFVKKNDVEIAILTVP--AEHAQEVADRLVK 168 (211)
T ss_pred HHHHhcCccEEEEEcc--HHHHHHHHHHHHH
Confidence 12 27899999999 6666666666543
No 476
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.78 E-value=0.26 Score=49.45 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 338 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 338 (721)
++|+|.|.|++|+.+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 589999999999999999999987 566788877
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.65 E-value=1.1 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 338 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 338 (721)
-++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999985
No 478
>PRK05868 hypothetical protein; Validated
Probab=92.60 E-value=0.091 Score=57.57 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 340 (721)
Q Consensus 305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 340 (721)
|++|.|||+|..|.+.|..|++.|++|+++|+.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 568999999999999999999999999999988653
No 479
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.54 E-value=0.27 Score=50.29 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 339 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 339 (721)
.||.|+|+|-+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 7899997643
No 480
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.53 E-value=0.048 Score=56.82 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999997 78888854
No 481
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.50 E-value=0.37 Score=49.58 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=53.3
Q ss_pred eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
+++.|||.+. +|.+|+..|.+.++.|+++...-..+. +.+++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~ 199 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKN 199 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence 5899999865 599999999999999999886432211 33578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
||+||.|+--.--+ . .+.+++++++++....
T Consensus 200 ADIvv~AvG~p~~i-----~--~d~vk~gavVIDVGin 230 (283)
T COG0190 200 ADIVVVAVGKPHFI-----K--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred CCEEEEecCCcccc-----c--cccccCCCEEEecCCc
Confidence 99999998522222 2 4567889998875543
No 482
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.49 E-value=0.22 Score=50.43 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=28.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceE-EEeC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 336 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 336 (721)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7776
No 483
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=92.44 E-value=0.43 Score=50.36 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=61.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 385 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 385 (721)
+++.|.|-|..|.++|..+.-.|.+|++++++|-.+-++. ++.....+-.+++..+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence 5688999999999999999999999999999997644331 2233333333667889
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
|++|.|.-..--+..+-+ ..+++++|++ |...
T Consensus 266 DifiT~TGnkdVi~~eh~----~~MkDgaIl~-N~GH 297 (420)
T COG0499 266 DIFVTATGNKDVIRKEHF----EKMKDGAILA-NAGH 297 (420)
T ss_pred CEEEEccCCcCccCHHHH----HhccCCeEEe-cccc
Confidence 999998864333333332 3357777775 4543
No 484
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.40 E-value=0.22 Score=53.24 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=32.4
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 341 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 341 (721)
+||.|.|+ |.+|+.++..|.+.|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 37999996 9999999999999999999999987653
No 485
>PRK07236 hypothetical protein; Provisional
Probab=92.38 E-value=0.13 Score=56.64 Aligned_cols=37 Identities=24% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 339 (721)
Q Consensus 303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 339 (721)
|+..+|.|||+|.-|...|..|++.|++|+++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4457899999999999999999999999999998864
No 486
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.53 Score=48.51 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred HHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCC
Q 004972 282 VFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK 360 (721)
Q Consensus 282 aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~ 360 (721)
+|+......|..+ +-|.|||+|-+|+-.+..|++.|. .+.++|.++-.+.....+.-..+ ..-|.
T Consensus 62 aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl---~DVG~ 127 (430)
T KOG2018|consen 62 AFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATL---ADVGT 127 (430)
T ss_pred hhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhH---hhcCC
Confidence 5776666555331 359999999999999999999998 68899988766665433211111 11111
Q ss_pred CCHHHHHHhhcC------------ceeccCccc--cCCCCEEEEcccCChHHHHHHHHH
Q 004972 361 LTQDKANNALKM------------LKGVLDYSE--FKDVDMVIEAVIESVPLKQKIFSE 405 (721)
Q Consensus 361 ~~~~~~~~~~~~------------i~~~~~~~~--l~~aDlVIeavpe~~~~k~~v~~~ 405 (721)
-........+.. +...++.+. ..+-|+||+|+- +.+.|..+++-
T Consensus 128 PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciD-NidtKVdLL~y 185 (430)
T KOG2018|consen 128 PKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCID-NIDTKVDLLEY 185 (430)
T ss_pred chHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhh-hhhhhhHHHHH
Confidence 001111111111 111222232 367899999985 78888887654
No 487
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.33 E-value=0.36 Score=50.19 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=53.1
Q ss_pred eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972 306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 383 (721)
Q Consensus 306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 383 (721)
++|.|||-+. .|.++|..|.+.|..|++++..-. ++ +.++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~ 206 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------------------------DLKKYTL 206 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------------------------CHHHHHh
Confidence 5899999987 899999999999999999984322 22 3367
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
+||+||.|+.-.- ++. ...+++++++++..+.
T Consensus 207 ~ADIvv~AvG~p~-----~i~--~~~vk~gavVIDvGin 238 (287)
T PRK14176 207 DADILVVATGVKH-----LIK--ADMVKEGAVIFDVGIT 238 (287)
T ss_pred hCCEEEEccCCcc-----ccC--HHHcCCCcEEEEeccc
Confidence 8999998774212 221 2367899999876554
No 488
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.28 E-value=0.39 Score=47.49 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 589999999999999999999998 69999976
No 489
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=92.25 E-value=0.12 Score=41.57 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=27.2
Q ss_pred EEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972 310 VIGGGLMGSGIATAHILNNIYVVLKEVNSE 339 (721)
Q Consensus 310 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 339 (721)
|||+|.-|.+.|..|++.|++|+++|++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998754
No 490
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.01 E-value=1.3 Score=47.56 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=76.0
Q ss_pred ceeEEEEcC-CCCcHHHHHHHHHCCCceE---EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Cc
Q 004972 305 VRKVAVIGG-GLMGSGIATAHILNNIYVV---LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY 379 (721)
Q Consensus 305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~---l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~ 379 (721)
|.||+|+|+ |+.|.-+...|.+++|++. .+. +.+...+- +. -.+ ..+.+.. +.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~---l~-------~~~-----------~~l~~~~~~~ 61 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHS---VP-------FAG-----------KNLRVREVDS 61 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCe---ec-------cCC-----------cceEEeeCCh
Confidence 468999997 9999999999998877433 332 22221110 00 000 0122211 11
Q ss_pred cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC--eeEEec
Q 004972 380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVR 457 (721)
Q Consensus 380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~--lvEiv~ 457 (721)
+.++++|+|+.|+|. ..-..+..++. ..++.++++++..... ..| .++-=.|+..+.. --.+|.
T Consensus 62 ~~~~~vD~vFla~p~--~~s~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~~iIA 127 (336)
T PRK05671 62 FDFSQVQLAFFAAGA--AVSRSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAPFLVS 127 (336)
T ss_pred HHhcCCCEEEEcCCH--HHHHHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCCCEEE
Confidence 235889999999993 44444545443 3578888999876653 111 2222223222111 012666
Q ss_pred CCCCCH-HHHHHHHHHHHHcCC
Q 004972 458 TERTSA-QVILDLMTVGKIIKK 478 (721)
Q Consensus 458 ~~~t~~-e~~~~~~~l~~~lG~ 478 (721)
.+++.+ ..+-.+.+|.+.++-
T Consensus 128 nPgC~~t~~~laL~PL~~~~~~ 149 (336)
T PRK05671 128 SPSASAVALAVALAPLKGLLDI 149 (336)
T ss_pred CCCcHHHHHHHHHHHHHHhcCC
Confidence 666544 445567777765653
No 491
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=92.00 E-value=3.7 Score=40.30 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=89.3
Q ss_pred ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC---C-CCcEEEecCCCCC
Q 004972 373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS---S-QDRIIGAHFFSPA 447 (721)
Q Consensus 373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~---~-~~r~ig~h~~~p~ 447 (721)
+..+ +|.++++++|+||.=.|. -.....+++++..-+++++|+ +++.+++.+.....+. + .-++-..||-.-|
T Consensus 127 ~~vttddreavedad~iitwlpk-g~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPK-GGVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccC-CCCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 4444 455899999999998873 223336677777778999877 6788888876555443 2 2356667775544
Q ss_pred CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCc
Q 004972 448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI 526 (721)
Q Consensus 448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~~~~G~p~ 526 (721)
..-.-|-|.. ...++|+++.+-++-+........+ |+++...+ +-+......++-.|+ +- -|.+..-+|-|.
T Consensus 205 emkgqvyiae-gyaseeavn~lyelg~karg~afk~---pa~llgpv-cdmcsavtaivyagll~y--rdavt~ilgapa 277 (343)
T COG4074 205 EMKGQVYIAE-GYASEEAVNALYELGEKARGLAFKV---PAYLLGPV-CDMCSAVTAIVYAGLLTY--RDAVTDILGAPA 277 (343)
T ss_pred cccCcEEEec-ccccHHHHHHHHHHHHHhhcccccC---cHHhhchH-HHHHHHHHHHHHHHHHHH--HHHHHHHhcCch
Confidence 3333333433 4568999999988887654333322 33332222 122222233333333 11 122334466666
Q ss_pred cHHHHHHhhchHHHH
Q 004972 527 GPFQLLDLAGYGVAA 541 (721)
Q Consensus 527 Gpf~~~D~~Gld~~~ 541 (721)
+--+.|-.-.|.-+.
T Consensus 278 dfaqmma~eal~qi~ 292 (343)
T COG4074 278 DFAQMMAVEALQQIA 292 (343)
T ss_pred hHHHHHHHHHHHHHH
Confidence 655554444444333
No 492
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.97 E-value=0.52 Score=49.26 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c-
Q 004972 307 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 382 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 382 (721)
||+|||+|.||...+..+.+ .+.++. ++|++++....... .+.| .-...++++. +
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~ 61 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA 61 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence 79999999999998777765 456665 68888875321110 0111 1112233322 2
Q ss_pred -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972 383 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422 (721)
Q Consensus 383 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 422 (721)
.+.|+|++|.|..... +... ..+..++.++++++.
T Consensus 62 ~~dIDaV~iaTp~~~H~--e~a~---~al~aGk~VIdekPa 97 (285)
T TIGR03215 62 NPDIDIVFDATSAKAHA--RHAR---LLAELGKIVIDLTPA 97 (285)
T ss_pred CCCCCEEEECCCcHHHH--HHHH---HHHHcCCEEEECCcc
Confidence 4689999999955442 2222 233456666665553
No 493
>PRK07877 hypothetical protein; Provisional
Probab=91.91 E-value=0.19 Score=59.19 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=28.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~ 337 (721)
.||+|||+| .|+.+|..|++.|. +++++|.+
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 479999999 89999999999995 89999975
No 494
>PLN00016 RNA-binding protein; Provisional
Probab=91.82 E-value=0.35 Score=53.01 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.1
Q ss_pred CceeEEEE----cC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972 304 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 340 (721)
Q Consensus 304 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 340 (721)
.++||.|+ |+ |.+|+.++..|.+.||+|++++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34689999 75 999999999999999999999998765
No 495
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=91.78 E-value=0.45 Score=50.10 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=70.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 384 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 384 (721)
.||+|+|+ |+.|.-+.+.|+.+- +|-+.....+.- + ...+..+.+++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------------------~------------~~~~~~~~~~~ 49 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------------------K------------DAAERAKLLNA 49 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------------------c------------CcCCHhHhhcC
Confidence 38999997 999999999999874 333333322210 0 00111133478
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC--CCeeEEecCCCCC
Q 004972 385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTERTS 462 (721)
Q Consensus 385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~--~~lvEiv~~~~t~ 462 (721)
+|+||.|+| ...-.++...+ ...++.|+++++...... +-..|+-=+||... .+--.+|..+.+.
T Consensus 50 ~D~vFlalp--~~~s~~~~~~~---~~~g~~VIDlSadfRl~~--------~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 50 ADVAILCLP--DDAAREAVSLV---DNPNTCIIDASTAYRTAD--------DWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CCEEEECCC--HHHHHHHHHHH---HhCCCEEEECChHHhCCC--------CCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 999999999 44444554444 246788888887654432 12222222222111 1112366666654
Q ss_pred H-HHHHHHHHHHHH
Q 004972 463 A-QVILDLMTVGKI 475 (721)
Q Consensus 463 ~-e~~~~~~~l~~~ 475 (721)
+ ..+-.+.+|.+.
T Consensus 117 aTa~~LaL~PL~~~ 130 (310)
T TIGR01851 117 PTGFIALMRPLVEA 130 (310)
T ss_pred HHHHHHHHHHHHHc
Confidence 4 455567777775
No 496
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.74 E-value=0.41 Score=49.26 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 004972 303 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 350 (721)
Q Consensus 303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~ 350 (721)
+..+++.|-|+ +-+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34578999998 9999999999999999999999999999987665543
No 497
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=91.71 E-value=0.12 Score=55.38 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 339 (721)
Q Consensus 307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 339 (721)
+|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999764
No 498
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.69 E-value=0.23 Score=53.77 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=60.1
Q ss_pred ceeEEEEc-CCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccc
Q 004972 305 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE 381 (721)
Q Consensus 305 ~~kI~VIG-~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 381 (721)
+.||+|+| .|.+|..+...|..... +++++..+.+...+... ... .....+.+... ...+.+ ..+.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~---~~~-~~~~~~~~~~~-----~~~~~v~~~~~~~ 73 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYG---EAV-RWQLDGPIPEE-----VADMEVVSTDPEA 73 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccc---ccc-ccccccccccc-----ccceEEEeCCHHH
Confidence 46999998 69999999999987654 88888666544322110 000 00000000000 001222 123455
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972 382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 425 (721)
Q Consensus 382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i 425 (721)
+.++|+|+.|+|.+ ...++...+. ..++.++++++....
T Consensus 74 ~~~~DvVf~a~p~~--~s~~~~~~~~---~~G~~vIDls~~fR~ 112 (349)
T PRK08664 74 VDDVDIVFSALPSD--VAGEVEEEFA---KAGKPVFSNASAHRM 112 (349)
T ss_pred hcCCCEEEEeCChh--HHHHHHHHHH---HCCCEEEECCchhcC
Confidence 67899999999954 3344444332 356777787876543
No 499
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.68 E-value=0.94 Score=46.50 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=35.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972 306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 344 (721)
Q Consensus 306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 344 (721)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999997 9999999999999999999999998766554
No 500
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.68 E-value=0.15 Score=47.08 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972 306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 337 (721)
Q Consensus 306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 337 (721)
+||.|+|+|.+|+.+|..|++.|. +++++|.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 589999999999999999999998 79999975
Done!