BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004974
(721 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic
OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
Length = 673
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/734 (57%), Positives = 500/734 (68%), Gaps = 100/734 (13%)
Query: 1 MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGS 60
MA G+LQLSH LGLCRNQ F + M R + H+ + L+ F + LS
Sbjct: 1 MALYGTLQLSHSLGLCRNQRFCNPENSAMRR-RLHISNGPLSLGVPLGQHGFSNILLSNY 59
Query: 61 PYSQINPIPYRSNRIR------------------------SYNALQCSPQALKLVPGIAI 96
I +P R+ R S+ +Q P KLVP +A+
Sbjct: 60 LRRPICSVPCRTTAFRCHSFSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVPAVAL 119
Query: 97 IVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVV 156
+VF+ WGL P RQ RN+LL K+DN WKKS T+HVMTSY+QPL+LW GA+ ICRALDPVV
Sbjct: 120 LVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVV 179
Query: 157 LPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGK 216
LPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK F ET++ D RNMGFQFAGK
Sbjct: 180 LPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQFAGK 239
Query: 217 AVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFV 276
A+YSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVL+TLAGREI TNFLSS MIHATRPFV
Sbjct: 240 ALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFV 299
Query: 277 LNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI 336
LNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HIPNHKFTVNVVRNL+QK+HWRI
Sbjct: 300 LNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRI 359
Query: 337 KTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSC 396
KTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRRVFL+N+ PENQAL SIL+SC
Sbjct: 360 KTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL--SILISC 417
Query: 397 FVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNR 456
FVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT++K++++ D+EN PF +++Y
Sbjct: 418 FVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY-- 475
Query: 457 GGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSK 516
GG S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ K ++ K +S
Sbjct: 476 GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENK---------GSNPKSKETSS 526
Query: 517 SDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSE 576
D KA+ K+ E+P SDT +KV E + ++
Sbjct: 527 PDLKANVKVGESPVSDT---------------------------------NKVPEETVAK 553
Query: 577 PKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQ 635
P V+ + S PT KD + S +++PK G +++K D S+S S
Sbjct: 554 P-VIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRS--------- 603
Query: 636 ESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM--PSSQPVVKELTTANRN-G 692
LEENIVLGVALEGSKRTLPIEE + P + KELT A R+ G
Sbjct: 604 ---------------TLEENIVLGVALEGSKRTLPIEEEIHSPPMETDAKELTGARRSGG 648
Query: 693 NVSSTAEKEKKDGQ 706
N A+KE+KD Q
Sbjct: 649 NGPLVADKEQKDSQ 662
>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic
OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1
Length = 678
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/702 (51%), Positives = 464/702 (66%), Gaps = 73/702 (10%)
Query: 1 MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGS 60
M +L LSHDL + + + G+ + +L L+S A+ QD S L S
Sbjct: 2 MMRTVALPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCAT--RQDVWSLQLLES 59
Query: 61 PYSQINPIPYRSNRI-------------------------RSYNALQCSPQALKLVPGIA 95
I P+ R N R Y+AL +P +KL+P +
Sbjct: 60 LSGSIVPVSSRCNAFVCRSALSPGNGNEGPILKSTAVIFTRVYDALGGNPHLVKLIPAVG 119
Query: 96 IIVFATWGLGPLMRQSRNLLLRK-SDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDP 154
I+ FATWGL PL+R +R L K +D + +KS T +++ SY+QPL+LW+GAIL+CR LDP
Sbjct: 120 ILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDP 179
Query: 155 VVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFA 214
+VLP+ AG+ +KQRLL F RS+STVLAF+ CLSSL+QQ QKFFMET + D RNMGF FA
Sbjct: 180 IVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNPADTRNMGFSFA 239
Query: 215 GKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRP 274
GKAVY+A WVA+ASLFMELLGFSTQKWLTAGGLGTVLLTLAGREI TNFLSS MIHATRP
Sbjct: 240 GKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRP 299
Query: 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHW 334
FVLNEWIQTKI GYEVSGTVE VGWWSPTI+RG+DREAVHIPNH+F+VN+VRNL+QK+HW
Sbjct: 300 FVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHW 359
Query: 335 RIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILV 394
RIKTHLAISHLDV KIN+IVADMRKVL+KNPQ+EQQ++HRRVFL++I+PENQAL IL+
Sbjct: 360 RIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQAL--RILI 417
Query: 395 SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIY 454
SCFVKTS EEYLCVKEA+LLDLL VI HH ARLATPIRTVQ++ ++A+++ F+D ++
Sbjct: 418 SCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF 477
Query: 455 NRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVS 514
N+ A NR +LIEP Y+IN +D +KS PS S G++ +P +P K++ +
Sbjct: 478 NQA--AMNRRYMLIEPSYKINSDDNSKS---PSPSPGQK----SP--SPGQKSEER---- 522
Query: 515 SKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVAD-KVTVKSTSKSFPKTKSKVAEIS 573
+ E P+ E +N + +S+ K + K + S S + K S
Sbjct: 523 ---------DLQEEPSETKAETENNGSVPVSNAKKENQKAALGSNSNTGTKGSST----- 568
Query: 574 SSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKI--DNPSISSSGGSDKAGGLQ 631
STSD P + S+ K+ + VG + + ++ D +I + S G +
Sbjct: 569 --------STSDQPVAQK--SEEKKKESVGDPHKAEKDEVSDDEATIEQTLKSKAKQGSE 618
Query: 632 ESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEE 673
++ ES S LEEN+VLGVAL+GSKRTLPI+E
Sbjct: 619 KNNGESKARDGGGSGTS-SLLEENLVLGVALDGSKRTLPIDE 659
>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain
K12) GN=ynaI PE=1 SV=1
Length = 343
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 112/212 (52%), Gaps = 8/212 (3%)
Query: 224 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 283
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 284 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 343
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 344 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHH 403
+ D K+ IV +R++L +P ++Q R+ L N + L +I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSL-NIMVYCFTKTTVW 299
Query: 404 EEYLCVKEAILLDLLRVISHHRARLATPIRTV 435
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 300 AEWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7
GN=ynaI PE=3 SV=1
Length = 343
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 112/212 (52%), Gaps = 8/212 (3%)
Query: 224 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 283
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 284 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 343
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 344 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHH 403
+ D K+ IV +R++L +P ++Q R+ L N + L +I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSL-NIMVYCFTKTTVW 299
Query: 404 EEYLCVKEAILLDLLRVISHHRARLATPIRTV 435
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 300 AEWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1
Length = 623
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 198 METTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 257
M T + + R K VY +++ + ++ LGF+ + + G+G + + LA +
Sbjct: 349 MATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVK 408
Query: 258 EIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 317
++ NF +S ++ F +WI EV GTV +G TI R D + +PN
Sbjct: 409 DVLANFFASVILLLDNSFSQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPN 463
Query: 318 HKFTVNVVRNLS-QKSHWRIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV-------- 367
+ +RN S +K RIK + +++ + V D++++L +P++
Sbjct: 464 SELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSAL 523
Query: 368 ----EQQRLHRR----------------VFLDNINPENQALLVSILVSCFVKTSHHEEYL 407
+ + + ++ VFLD + ++ILV CF KT EE+L
Sbjct: 524 QNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQFADSS----INILVYCFSKTVVWEEWL 579
Query: 408 CVKEAILLDLLRVISHHRARLATP 431
VKE ++L ++ ++ H A P
Sbjct: 580 EVKEDVMLKIMGIVEKHHLSFAFP 603
>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori
(strain J99) GN=jhp_0969 PE=3 SV=1
Length = 623
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 39/246 (15%)
Query: 216 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPF 275
K VY +++ + ++ LGF+ + + G+G + + LA +++ NF +S ++ F
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSF 426
Query: 276 VLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS-QKSHW 334
+WI EV GTV +G TI R D + +PN + +RN S +K
Sbjct: 427 SQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPNSELAGKPIRNWSRRKVGR 481
Query: 335 RIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV------------EQQRLHRR------ 375
RIK + +++ + V D++++L +P++ + + + ++
Sbjct: 482 RIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSID 541
Query: 376 ----------VFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHR 425
VFLD + ++ILV CF KT EE+L VKE ++L ++ ++ H
Sbjct: 542 DFLGYKNNLFVFLDQFADSS----INILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597
Query: 426 ARLATP 431
A P
Sbjct: 598 LSFAFP 603
>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus
(strain VF5) GN=aq_812 PE=3 SV=1
Length = 368
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 123/242 (50%), Gaps = 12/242 (4%)
Query: 195 KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 254
+FF++ A +G F K + + V V + ++ G + L + GL + ++L
Sbjct: 130 EFFVKVGGKDFAEEVG-DFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLLGLAVSL 188
Query: 255 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 314
A ++ F N LS +I +P + E ++ K + G+VE +G S T +R D+ V
Sbjct: 189 AAKDTFENILSGLIILLDKPVKVGETVKVK----DFMGSVEDIGLRS-TKIRTFDKSLVT 243
Query: 315 IPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH 373
IPN N V N ++++ R++ ++ + + ++ +I+ ++R++L ++P V +
Sbjct: 244 IPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKREQLENILKEIRELLKEHPGVAKDE-K 302
Query: 374 RRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIR 433
V+ +N + ++IL+ + T+ +EEYL + E I L ++ ++ + + A P R
Sbjct: 303 FYVYFENYGDSS----LNILIQYYANTNDYEEYLKIIEDINLKIMEIVEKNGSSFAFPSR 358
Query: 434 TV 435
+V
Sbjct: 359 SV 360
>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial
OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
Length = 497
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 232 ELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 291
E G + Q LT GG+G V A R+I N LS + +RPF + + I+ V
Sbjct: 301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGD----TIKAGSVE 356
Query: 292 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 350
G V +G + +++ E + V +PN F+ V+ N S ++ WR I + + + D+ I
Sbjct: 357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414
Query: 351 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVK 410
I +++++L N +V + +L + + + C + EE +
Sbjct: 415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKS----FAELTIGCNLIRMGKEELYNTQ 470
Query: 411 EAILLDLLRVISHHRARLAT 430
+ +LL+ +++I H L T
Sbjct: 471 QEVLLEAVKIIKKHGVSLGT 490
>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143
PE=1 SV=1
Length = 361
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 252 LTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDRE 311
+ LA + + +N ++ +I +PF + WI T G SG VE +G S T +R D
Sbjct: 179 VALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGIVEDIGIRS-TKIRATDNS 233
Query: 312 AVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQ 370
+ +PN K +++N+ K+ W++ T + +++ V KI ++ +L ++P VE +
Sbjct: 234 IIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRKAEEIIKNILLEHPNVEDE 293
>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis
(strain 168) GN=yhdY PE=3 SV=1
Length = 371
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 98/220 (44%), Gaps = 12/220 (5%)
Query: 213 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 272
F K + + S S+ + + ++ GLG + LA ++ +NF +I
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195
Query: 273 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 332
+PF + +W++T V+G+VE + + S T R V +PN ++ + N ++ +
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250
Query: 333 HWRIKTHLAISHLD-VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVS 391
+I + +S+ + + + +R +L ++ V+ + + + N + + +
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNE-----IIMVNFDTFADS-YYN 304
Query: 392 ILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATP 431
+ + + KT+ E L ++E I ++ ++ + A P
Sbjct: 305 LFFNFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYP 344
>sp|P42531|Y1270_CORGL Uncharacterized protein Cgl1270/cg1434 OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=Cgl1270 PE=4 SV=2
Length = 491
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 198 METTDSGDARNMGFQFAGKAVYSAVWVASASLF---MELLGFSTQKWLTAGGLGTVLLTL 254
+E+ D FAG VY A VA L M+ GFS + + + L
Sbjct: 8 VESAADADTTKNQLAFAGVGVYIAQIVAFFMLAVSAMQAFGFSLAGAAIPATIASAAIGL 67
Query: 255 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 314
+ I +FL+ I + F + +W++ + G V GTV + + T +R +E V
Sbjct: 68 GAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRA-TKIRTIAQETVI 126
Query: 315 IPNH--KFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVA 355
IPN K +N N S R + I L I ++A
Sbjct: 127 IPNSTAKVCINNSNNWS-----RAVVVIPIPMLGSENITDVIA 164
>sp|Q57634|MSMJS_METJA Small-conductance mechanosensitive channel MscMJ
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0170
PE=1 SV=1
Length = 350
Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 262 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 321
NF++ +I +PF L W+ K++G E G VE +G S T +R D + IPN +
Sbjct: 182 NFIAGILILIDKPFSLGHWV--KVKGAE--GIVEEIGIRS-TRIRTFDYTLITIPNSELL 236
Query: 322 VNVVRNLSQKSHWRIKTHLAISH 344
+ + NL+ + R+ + +++
Sbjct: 237 DSAIENLTVRDRRRVLMTIGLTY 259
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 488 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 547
RS+G + G ++ A+S++S S+ S S+ + EA + E++ +S
Sbjct: 1157 RSAGTETGS-------NINANSELSPSAGSRSREQSS--EASETGVSENEENPVRIISVT 1207
Query: 548 KVADKVTVKSTSKSFPKTKSKVAEISSSEPK---VLGSTSDNPTK-DRKVSDS------- 596
V + TVK+ K +S ISS K V + ++N K D KV +S
Sbjct: 1208 PVKNIDTVKN--KEINSDQSTQGNISSDRGKKRIVTAAGAENIQKPDEKVDESGPPAPSK 1265
Query: 597 ----KQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 644
++PK QGNAT+N ++ P S G +A G QES + N K P Q
Sbjct: 1266 PRRGRRPKSESQGNATKNDDLNKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1315
>sp|P39955|SAP1_YEAST Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAP1 PE=1 SV=1
Length = 897
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 496 KTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAH---MSDPKVADK 552
K+TP K+++K + S + S + PNS ++ K A A ++ KVA
Sbjct: 404 KSTPTFITRSKSNTKPIIKSNASSPTSSLT--VPNSVIQKPKTAAMAAKRVLNSKKVASN 461
Query: 553 VTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSK-------QPKIVGQG 605
+ +T KS P KSK A++ +S K TS +P+ R VS+SK Q K +
Sbjct: 462 PALNTTKKSHPILKSKTAKVPNSSSK---KTSSHPS--RPVSNSKPYSHGASQNKKPSKN 516
Query: 606 NATQNS----------KIDNPSISSSGGSD---KAGGLQESKQESNKLPSTQPPVSRPAL 652
T S KI +P I G D A L E ++E P V R L
Sbjct: 517 QTTSMSKTNRKIPAQKKIGSPKIEDVGTEDATEHATSLNEQREE----PEIDKKVLREIL 572
Query: 653 EENIVLGVALEGSKR 667
E+ I+ +L+G R
Sbjct: 573 EDEII--DSLQGVDR 585
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus
GN=Pds5a PE=2 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 587 PTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 644
P+K R+ ++PK QGNAT+N + P S G +A G QES + N K P Q
Sbjct: 1264 PSKPRR---GRRPKSESQGNATKNDDLSKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,432,399
Number of Sequences: 539616
Number of extensions: 10749755
Number of successful extensions: 32525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 26543
Number of HSP's gapped (non-prelim): 4167
length of query: 721
length of database: 191,569,459
effective HSP length: 125
effective length of query: 596
effective length of database: 124,117,459
effective search space: 73974005564
effective search space used: 73974005564
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)