Query 004974
Match_columns 721
No_of_seqs 297 out of 2159
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10334 mechanosensitive chan 100.0 6.4E-43 1.4E-47 369.6 35.7 251 168-438 27-278 (286)
2 PRK11465 putative mechanosensi 100.0 5.7E-40 1.2E-44 379.3 42.3 290 130-437 425-724 (741)
3 PRK11281 hypothetical protein; 100.0 5.8E-39 1.3E-43 385.7 40.8 252 168-438 835-1089(1113)
4 PRK10929 putative mechanosensi 100.0 1.2E-38 2.6E-43 381.8 42.9 251 169-438 833-1086(1109)
5 COG3264 Small-conductance mech 100.0 4.7E-35 1E-39 336.3 38.4 250 170-438 559-811 (835)
6 PF00924 MS_channel: Mechanose 100.0 2.4E-35 5.3E-40 294.8 21.2 203 216-428 2-206 (206)
7 COG0668 MscS Small-conductance 100.0 2.8E-33 6.2E-38 295.2 35.6 213 208-436 80-296 (316)
8 KOG4629 Predicted mechanosensi 99.7 5.3E-18 1.2E-22 196.1 13.7 219 210-436 479-699 (714)
9 PRK11281 hypothetical protein; 88.2 8.9 0.00019 48.8 15.3 29 59-87 474-502 (1113)
10 PRK02509 hypothetical protein; 88.1 36 0.00077 42.7 19.8 19 65-83 144-162 (973)
11 PRK12438 hypothetical protein; 86.9 16 0.00034 45.9 16.0 18 413-430 540-557 (991)
12 PRK10263 DNA translocase FtsK; 85.7 11 0.00025 48.3 14.2 13 317-329 246-258 (1355)
13 PF03699 UPF0182: Uncharacteri 84.4 58 0.0013 40.2 19.0 25 214-238 247-271 (774)
14 PF12794 MscS_TM: Mechanosensi 83.4 65 0.0014 35.7 17.6 112 119-243 113-226 (340)
15 COG0053 MMT1 Predicted Co/Zn/C 82.6 80 0.0017 34.5 19.8 34 333-366 244-278 (304)
16 PRK00068 hypothetical protein; 81.7 34 0.00074 43.0 15.8 18 413-430 536-553 (970)
17 TIGR01654 bact_immun_7tm bacte 80.1 85 0.0018 38.1 18.4 12 359-370 403-414 (679)
18 PRK11465 putative mechanosensi 78.7 1.4E+02 0.0031 36.8 19.4 25 211-235 423-447 (741)
19 COG2274 SunT ABC-type bacterio 77.1 1.5E+02 0.0032 36.5 19.0 38 228-265 285-322 (709)
20 PRK10334 mechanosensitive chan 76.8 70 0.0015 34.7 14.8 20 352-371 252-271 (286)
21 PRK10929 putative mechanosensi 74.4 1E+02 0.0022 39.6 17.3 29 119-147 586-614 (1109)
22 COG1033 Predicted exporters of 69.7 2.5E+02 0.0055 34.6 18.5 71 186-256 264-338 (727)
23 COG3264 Small-conductance mech 66.2 3.4E+02 0.0074 33.9 19.0 23 213-235 510-532 (835)
24 PRK05585 yajC preprotein trans 65.3 17 0.00038 33.8 6.1 40 275-318 53-92 (106)
25 COG1480 Predicted membrane-ass 64.7 2.8E+02 0.0061 33.9 17.1 20 245-264 442-461 (700)
26 TIGR00739 yajC preprotein tran 63.8 22 0.00047 31.8 6.2 37 275-315 38-74 (84)
27 PF12794 MscS_TM: Mechanosensi 62.4 2.5E+02 0.0055 31.1 17.6 44 211-254 122-167 (340)
28 COG4956 Integral membrane prot 61.6 1.2E+02 0.0025 33.8 12.2 19 172-190 45-63 (356)
29 PF06123 CreD: Inner membrane 57.9 2.9E+02 0.0062 32.0 15.3 22 233-254 397-418 (430)
30 COG1862 YajC Preprotein transl 56.8 29 0.00063 32.0 5.8 41 275-319 44-84 (97)
31 PF15420 Abhydrolase_9_N: Alph 56.6 2.5E+02 0.0054 29.2 19.7 38 81-119 5-42 (208)
32 PF03030 H_PPase: Inorganic H+ 53.8 5.1E+02 0.011 31.9 17.5 26 171-196 75-100 (682)
33 PF11449 DUF2899: Protein of u 51.9 1.6E+02 0.0036 32.3 11.5 43 210-252 178-224 (298)
34 PRK05886 yajC preprotein trans 50.7 44 0.00096 31.4 6.1 37 275-315 39-75 (109)
35 COG1286 CvpA Uncharacterized m 50.4 2.9E+02 0.0063 28.1 13.1 32 173-204 28-59 (182)
36 PF12961 DUF3850: Domain of Un 48.0 37 0.00081 29.7 4.8 32 270-301 24-56 (72)
37 COG2274 SunT ABC-type bacterio 47.9 4.4E+02 0.0096 32.5 15.6 41 212-253 384-424 (709)
38 PRK10845 colicin V production 47.5 3E+02 0.0064 27.3 14.5 68 175-243 65-133 (162)
39 PF07331 TctB: Tripartite tric 47.4 2.5E+02 0.0053 26.4 12.1 28 214-241 72-99 (141)
40 TIGR01654 bact_immun_7tm bacte 46.9 5.5E+02 0.012 31.2 16.2 27 92-118 173-199 (679)
41 COG4956 Integral membrane prot 45.9 3.3E+02 0.0071 30.4 12.5 28 84-111 39-66 (356)
42 PF14545 DBB: Dof, BCAP, and B 44.8 1E+02 0.0023 30.3 7.9 83 267-355 15-98 (142)
43 PRK12438 hypothetical protein; 43.5 8.3E+02 0.018 31.4 21.0 12 211-222 165-176 (991)
44 TIGR02865 spore_II_E stage II 43.2 2.1E+02 0.0045 35.5 12.0 13 415-427 468-480 (764)
45 PRK03557 zinc transporter ZitB 42.4 4.9E+02 0.011 28.4 19.0 28 336-366 253-281 (312)
46 PF05552 TM_helix: Conserved T 41.8 40 0.00087 27.1 3.9 37 165-202 11-47 (53)
47 PRK11462 putative transporter; 41.7 5.7E+02 0.012 29.0 15.9 22 105-126 58-79 (460)
48 PRK06531 yajC preprotein trans 41.4 68 0.0015 30.4 5.8 38 275-316 37-75 (113)
49 PRK12911 bifunctional preprote 40.6 7E+02 0.015 33.0 15.9 24 213-236 1006-1029(1403)
50 PF05975 EcsB: Bacterial ABC t 40.1 5.2E+02 0.011 29.0 13.7 11 216-226 167-177 (386)
51 PRK05415 hypothetical protein; 39.2 6.1E+02 0.013 28.6 19.7 78 179-260 227-315 (341)
52 TIGR00844 c_cpa1 na(+)/h(+) an 38.8 9E+02 0.019 30.4 17.1 15 671-685 778-792 (810)
53 PF06442 DHFR_2: R67 dihydrofo 38.7 25 0.00053 30.1 2.2 42 260-305 8-50 (78)
54 smart00739 KOW KOW (Kyprides, 37.4 56 0.0012 22.1 3.6 25 274-298 1-26 (28)
55 PF06107 DUF951: Bacterial pro 36.6 81 0.0018 26.4 4.9 45 275-321 2-49 (57)
56 PRK09554 feoB ferrous iron tra 36.1 2.4E+02 0.0052 35.0 11.0 58 211-268 509-592 (772)
57 PF06638 Strabismus: Strabismu 35.7 4.3E+02 0.0094 31.2 12.2 7 104-110 106-112 (505)
58 COG2211 MelB Na+/melibiose sym 35.4 3.9E+02 0.0085 31.3 12.0 14 112-125 68-81 (467)
59 PF05297 Herpes_LMP1: Herpesvi 35.3 12 0.00027 40.4 0.0 11 233-243 131-141 (381)
60 PF04791 LMBR1: LMBR1-like mem 35.3 7.2E+02 0.016 28.3 15.0 12 253-264 178-189 (471)
61 PRK13692 (3R)-hydroxyacyl-ACP 34.8 1.6E+02 0.0036 29.0 7.8 17 267-283 89-105 (159)
62 PRK03612 spermidine synthase; 34.7 8.2E+02 0.018 28.8 20.6 34 211-244 150-183 (521)
63 PRK00068 hypothetical protein; 34.1 1.1E+03 0.024 30.2 20.7 12 211-222 163-174 (970)
64 PRK09509 fieF ferrous iron eff 34.1 6.3E+02 0.014 27.2 20.1 31 334-364 243-274 (299)
65 COG4858 Uncharacterized membra 34.1 5.6E+02 0.012 26.7 11.4 12 141-152 103-114 (226)
66 PF03699 UPF0182: Uncharacteri 33.9 1E+03 0.023 29.7 20.1 13 220-232 209-221 (774)
67 KOG2568 Predicted membrane pro 33.5 8.9E+02 0.019 28.8 16.4 17 180-196 353-369 (518)
68 smart00743 Agenet Tudor-like d 32.9 1.3E+02 0.0028 24.4 5.6 26 274-299 2-29 (61)
69 PF07290 DUF1449: Protein of u 32.8 3.1E+02 0.0067 28.5 9.6 13 137-149 63-75 (202)
70 COG1615 Uncharacterized conser 32.6 5.6E+02 0.012 31.8 12.6 12 271-283 309-320 (885)
71 TIGR00966 3a0501s07 protein-ex 32.2 6.2E+02 0.014 26.6 12.8 22 214-235 199-220 (246)
72 COG1457 CodB Purine-cytosine p 32.1 8.2E+02 0.018 28.5 13.7 24 130-153 153-176 (442)
73 PF14348 DUF4400: Domain of un 31.9 5.6E+02 0.012 26.0 15.3 74 186-263 123-197 (198)
74 COG4425 Predicted membrane pro 31.9 6.8E+02 0.015 29.5 12.6 33 82-115 70-102 (588)
75 PF11282 DUF3082: Protein of u 31.5 2.6E+02 0.0056 25.1 7.6 30 174-203 9-38 (82)
76 PF00575 S1: S1 RNA binding do 31.3 2.5E+02 0.0053 23.2 7.3 39 291-330 9-47 (74)
77 COG4258 Predicted exporter [Ge 31.2 1.1E+03 0.023 29.0 15.8 44 214-257 730-776 (788)
78 PF13726 Na_H_antiport_2: Na+- 31.0 72 0.0016 29.0 4.0 45 223-267 5-50 (88)
79 PF05297 Herpes_LMP1: Herpesvi 30.9 16 0.00035 39.6 0.0 8 218-225 177-184 (381)
80 TIGR00844 c_cpa1 na(+)/h(+) an 30.9 1.2E+03 0.026 29.4 15.7 25 416-440 420-451 (810)
81 PF02934 GatB_N: GatB/GatE cat 30.7 3E+02 0.0065 30.2 9.5 152 262-428 82-242 (289)
82 COG1269 NtpI Archaeal/vacuolar 30.6 1.1E+03 0.023 28.9 16.5 8 241-248 525-532 (660)
83 COG0370 FeoB Fe2+ transport sy 30.4 5.2E+02 0.011 31.6 12.1 58 211-268 498-577 (653)
84 PF02699 YajC: Preprotein tran 30.3 17 0.00037 32.1 0.0 38 274-315 36-73 (82)
85 PF14801 GCD14_N: tRNA methylt 30.2 28 0.0006 28.8 1.2 12 272-283 3-14 (54)
86 PF09378 HAS-barrel: HAS barre 30.1 59 0.0013 28.2 3.4 32 269-300 15-49 (91)
87 PHA00094 VI minor coat protein 30.0 4.9E+02 0.011 24.7 10.7 26 155-180 63-88 (112)
88 PLN03159 cation/H(+) antiporte 30.0 1.2E+03 0.026 29.3 18.0 15 6-20 2-16 (832)
89 PF09953 DUF2187: Uncharacteri 29.8 89 0.0019 26.2 4.1 27 275-305 4-30 (57)
90 PRK13022 secF preprotein trans 29.7 7.6E+02 0.016 26.8 12.7 25 213-237 227-251 (289)
91 cd03452 MaoC_C MaoC_C The C-t 29.6 1.1E+02 0.0024 29.1 5.5 16 268-283 82-97 (142)
92 KOG4016 Synaptic vesicle prote 29.4 1.4E+02 0.003 31.4 6.2 69 209-279 105-174 (233)
93 PF01914 MarC: MarC family int 28.2 3.4E+02 0.0074 27.9 9.1 29 226-254 57-85 (203)
94 TIGR03796 NHPM_micro_ABC1 NHPM 28.0 1.1E+03 0.025 28.4 18.4 9 651-659 568-576 (710)
95 PF03739 YjgP_YjgQ: Predicted 27.8 6E+02 0.013 27.5 11.5 19 233-251 86-104 (354)
96 COG1377 FlhB Flagellar biosynt 27.5 9.5E+02 0.021 27.3 18.2 22 169-190 143-164 (363)
97 PF07760 DUF1616: Protein of u 27.3 3.5E+02 0.0077 29.2 9.4 23 233-255 81-103 (287)
98 PF01810 LysE: LysE type trans 27.1 6.1E+02 0.013 24.9 14.5 18 213-230 171-188 (191)
99 PRK10739 putative antibiotic t 27.0 4.1E+02 0.0088 27.4 9.3 34 222-255 53-86 (197)
100 COG0733 Na+-dependent transpor 26.9 1.1E+03 0.023 27.6 17.1 44 73-116 72-120 (439)
101 TIGR00427 membrane protein, Ma 26.6 3.5E+02 0.0076 27.8 8.8 34 222-255 56-89 (201)
102 COG0342 SecD Preprotein transl 26.6 2.6E+02 0.0056 33.0 8.7 30 223-256 378-407 (506)
103 COG0064 GatB Asp-tRNAAsn/Glu-t 26.6 7.4E+02 0.016 29.2 12.1 146 265-423 92-241 (483)
104 PF05128 DUF697: Domain of unk 26.6 5E+02 0.011 25.4 9.6 79 182-264 50-139 (162)
105 COG1283 NptA Na+/phosphate sym 26.4 1.2E+03 0.025 28.0 16.0 9 182-190 107-115 (533)
106 PRK10845 colicin V production 26.3 6.5E+02 0.014 24.9 15.5 26 173-198 28-53 (162)
107 PRK11715 inner membrane protei 26.2 1.1E+03 0.023 27.5 13.5 22 233-254 403-424 (436)
108 COG1230 CzcD Co/Zn/Cd efflux s 26.2 9.1E+02 0.02 26.6 13.9 24 207-230 156-179 (296)
109 PRK00293 dipZ thiol:disulfide 26.1 1.1E+03 0.023 28.2 13.9 27 211-237 360-386 (571)
110 TIGR01129 secD protein-export 25.3 1.1E+03 0.023 27.0 13.2 6 230-235 362-367 (397)
111 PRK09108 type III secretion sy 25.1 1E+03 0.022 26.8 15.9 22 170-191 139-160 (353)
112 KOG2568 Predicted membrane pro 25.0 3.9E+02 0.0085 31.7 9.6 24 130-153 379-402 (518)
113 PRK10263 DNA translocase FtsK; 25.0 1.8E+03 0.038 29.6 16.7 11 233-243 178-188 (1355)
114 cd03453 SAV4209_like SAV4209_l 24.2 2.6E+02 0.0057 25.8 6.8 16 268-283 74-89 (127)
115 TIGR01297 CDF cation diffusion 24.2 8.2E+02 0.018 25.4 20.8 36 333-368 222-259 (268)
116 PRK08559 nusG transcription an 23.9 2.3E+02 0.0049 27.8 6.5 47 273-320 93-145 (153)
117 PRK11404 putative PTS system 23.8 8.3E+02 0.018 28.7 12.1 23 129-151 173-196 (482)
118 smart00333 TUDOR Tudor domain. 23.8 2.3E+02 0.0049 22.3 5.5 46 274-320 2-50 (57)
119 PF05437 AzlD: Branched-chain 23.6 3.9E+02 0.0084 23.9 7.6 25 245-269 70-94 (99)
120 PF04156 IncA: IncA protein; 23.5 2.1E+02 0.0046 28.5 6.4 26 229-254 24-50 (191)
121 PF02990 EMP70: Endomembrane p 23.2 4.7E+02 0.01 30.7 10.1 12 256-267 378-389 (521)
122 TIGR00916 2A0604s01 protein-ex 23.1 8E+02 0.017 24.9 11.2 16 224-239 84-99 (192)
123 TIGR00437 feoB ferrous iron tr 22.7 5.7E+02 0.012 30.7 10.8 58 211-268 473-550 (591)
124 COG4317 Uncharacterized protei 22.6 2.5E+02 0.0054 25.4 5.7 44 223-266 12-55 (93)
125 PRK12468 flhB flagellar biosyn 22.6 1.2E+03 0.026 26.7 14.3 10 356-365 300-309 (386)
126 PLN03223 Polycystin cation cha 22.3 2E+03 0.044 29.3 16.0 20 346-368 1461-1480(1634)
127 COG1283 NptA Na+/phosphate sym 22.2 1.4E+03 0.03 27.4 14.1 13 254-266 241-253 (533)
128 PRK05702 flhB flagellar biosyn 22.1 1.2E+03 0.025 26.4 14.7 21 170-190 144-164 (359)
129 PF11674 DUF3270: Protein of u 22.1 4E+02 0.0087 24.4 7.1 49 211-259 39-87 (90)
130 TIGR00405 L26e_arch ribosomal 22.1 2E+02 0.0044 27.6 5.8 25 273-298 85-111 (145)
131 PRK12911 bifunctional preprote 22.0 1.3E+03 0.028 30.8 13.8 42 212-253 1338-1379(1403)
132 PRK05812 secD preprotein trans 22.0 1E+03 0.022 28.1 12.4 15 222-236 439-453 (498)
133 PRK11111 hypothetical protein; 21.9 6E+02 0.013 26.5 9.5 34 222-255 59-92 (214)
134 TIGR00328 flhB flagellar biosy 21.9 1.2E+03 0.025 26.3 14.5 15 413-427 290-304 (347)
135 COG1459 PulF Type II secretory 21.8 1.2E+03 0.027 26.6 14.3 31 130-160 158-188 (397)
136 PRK11598 putative metal depend 21.8 1.4E+03 0.03 27.3 15.8 13 416-428 307-319 (545)
137 PRK15120 lipopolysaccharide AB 21.8 1E+03 0.022 26.3 11.9 10 130-139 6-15 (366)
138 TIGR00833 actII Transport prot 21.8 1.7E+03 0.037 28.2 18.9 24 231-254 295-318 (910)
139 COG4280 Predicted membrane pro 21.6 9.7E+02 0.021 25.3 10.9 38 249-286 161-205 (236)
140 PRK10694 acyl-CoA esterase; Pr 21.6 1.4E+02 0.003 28.7 4.4 30 268-305 61-90 (133)
141 COG4873 Uncharacterized protei 21.5 1.1E+02 0.0023 26.6 3.1 27 275-305 24-50 (81)
142 PF00873 ACR_tran: AcrB/AcrD/A 21.4 9.3E+02 0.02 30.7 12.9 144 93-272 337-480 (1021)
143 cd03455 SAV4209 SAV4209 is a S 21.4 2.5E+02 0.0055 25.7 6.1 41 265-313 70-115 (123)
144 cd03454 YdeM YdeM is a Bacillu 21.4 2.3E+02 0.005 26.5 5.9 16 268-283 82-97 (140)
145 PF09323 DUF1980: Domain of un 21.3 2.9E+02 0.0063 27.7 6.9 14 216-229 73-86 (182)
146 PF00467 KOW: KOW motif; Inte 21.1 1.5E+02 0.0033 21.3 3.5 23 277-300 1-25 (32)
147 PF14402 7TM_transglut: 7 tran 21.1 9.8E+02 0.021 26.7 11.1 25 213-237 190-218 (313)
148 TIGR00917 2A060601 Niemann-Pic 20.8 5.7E+02 0.012 33.5 10.9 27 216-242 1079-1105(1204)
149 COG4988 CydD ABC-type transpor 20.8 1.5E+03 0.033 27.2 16.7 13 415-427 425-437 (559)
150 PRK12933 secD preprotein trans 20.7 1.5E+03 0.033 27.5 13.5 14 222-235 547-560 (604)
151 PF05552 TM_helix: Conserved T 20.7 2.2E+02 0.0047 22.9 4.7 30 89-119 17-46 (53)
152 PF02237 BPL_C: Biotin protein 20.6 3E+02 0.0064 21.6 5.4 41 277-317 2-42 (48)
153 TIGR03796 NHPM_micro_ABC1 NHPM 20.5 1.5E+03 0.033 27.2 14.8 9 76-84 144-152 (710)
154 PRK13023 bifunctional preprote 20.1 1.8E+03 0.038 27.7 14.3 22 216-237 378-399 (758)
155 cd03441 R_hydratase_like (R)-h 20.1 3.2E+02 0.007 24.4 6.5 19 265-283 71-89 (127)
156 TIGR00914 2A0601 heavy metal e 20.1 1.2E+03 0.026 29.9 13.5 19 131-149 906-924 (1051)
157 PF13452 MaoC_dehydrat_N: N-te 20.0 2.5E+02 0.0055 25.8 5.8 24 260-283 73-96 (132)
No 1
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=6.4e-43 Score=369.61 Aligned_cols=251 Identities=18% Similarity=0.249 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 004974 168 RLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL 247 (721)
Q Consensus 168 ~l~~~l~slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi 247 (721)
+.++++.+++ +++++|++.+++..+.+.+.++.. .+.....++.+++++++++++++++|..+|++++++++++|+
T Consensus 27 ~~~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~ 102 (286)
T PRK10334 27 YAVNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 102 (286)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3445555554 445688888888875554443322 233346788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 004974 248 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN 327 (721)
Q Consensus 248 ~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N 327 (721)
+|+++|||+|++++|++||++|+++|||++||||++ ++++|+|++|+||+ |++|++||+.++|||+.+.++.|+|
T Consensus 103 ~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N 177 (286)
T PRK10334 103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIIN 177 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEE
Confidence 999999999999999999999999999999999999 78999999999999 9999999999999999999999999
Q ss_pred cccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHH
Q 004974 328 LSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEY 406 (721)
Q Consensus 328 ~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~ 406 (721)
||+.+.+|+.+.++++| +|++++++ .++++++++|.+..+| +|.|.+.++++++ + +++++||+++.+ |
T Consensus 178 ~s~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~dss--i--~~~v~~wv~~~~---~ 246 (286)
T PRK10334 178 FSREPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGASS--I--NFVVRVWSNSGD---L 246 (286)
T ss_pred cCCCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeCce--E--EEEEEEEEecch---h
Confidence 99988899999999999 89999999 5778899999999888 7899999999995 4 499999999764 5
Q ss_pred HHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974 407 LCVKEAILLDLLRVISHHRARLATPIRTVQKI 438 (721)
Q Consensus 407 ~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~ 438 (721)
++++++++++|+++|+++||++|||+++++..
T Consensus 247 ~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~ 278 (286)
T PRK10334 247 QNVYWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence 78999999999999999999999999998854
No 2
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=379.33 Aligned_cols=290 Identities=11% Similarity=0.110 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc----CCC
Q 004974 130 HVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETT----DSG 204 (721)
Q Consensus 130 ~il~~l~~PL~l~i~~i~i~~al~~l~lp~~~~~~v~~~l~~~l~slliil~~~~~l~rli~~-i~~~~~~~~----~~~ 204 (721)
.+++.++ |+.+++++++++.++..+.+...........+...+..++++++++++++.+.+. +.+++.+.. ...
T Consensus 425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~ 503 (741)
T PRK11465 425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS 503 (741)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence 5566666 8888888888888887655443111111122223333333333233333333332 233332221 111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEe
Q 004974 205 DARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTK 284 (721)
Q Consensus 205 ~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~ 284 (721)
........++++++++++++++++++|..+|++++++++++|++|+++|||+|++++||++|++|++++||++||||++
T Consensus 504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v- 582 (741)
T PRK11465 504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI- 582 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence 2334568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHc
Q 004974 285 IEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAK 363 (721)
Q Consensus 285 i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~ 363 (721)
++++|+||+|++|+ |++|++||+.++|||+.+.+ |+|||+. ..++.+.++|+| +|.++++++++++.+.+.+
T Consensus 583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~ 655 (741)
T PRK11465 583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME 655 (741)
T ss_pred ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence 78999999999999 99999999999999999975 9999985 668888999999 9999999998888887878
Q ss_pred CCCc----cccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEE
Q 004974 364 NPQV----EQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQK 437 (721)
Q Consensus 364 ~p~v----~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~ 437 (721)
+|++ ..++ +.+.++++++++ + ++++++|++. .++|.++++++++|+++|+++||+||+|+.++..
T Consensus 656 dpe~~~~il~~p--~~vgV~~lgdSs--i--~lrvr~~t~p---~~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~~ 724 (741)
T PRK11465 656 NEEIRGLIIGEP--NFAGIVGLTNTA--F--TLRVSFTTLP---LKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLP 724 (741)
T ss_pred CccccccccCCC--CeEEEEEecCce--E--EEEEEEEECc---chHHHHHHHHHHHHHHHHHHCCCCCCCCceEeec
Confidence 8864 3343 357899999985 3 4888888865 4668999999999999999999999888776543
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-39 Score=385.67 Aligned_cols=252 Identities=20% Similarity=0.213 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 004974 168 RLLNFVRSLSTVLAFAYCLSSLIQQAQKF-FMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 246 (721)
Q Consensus 168 ~l~~~l~slliil~~~~~l~rli~~i~~~-~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslG 246 (721)
++.+++.+++ +++++|++.+++..+... +.++... +.....++.++++++++++++++++..+|++.+++.+.+|
T Consensus 835 tl~~Ll~all-Il~i~~~l~r~l~~ll~~~~~~rl~l---~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~g 910 (1113)
T PRK11281 835 TLGNLLFALI-ILVVTYVLVRNLPGLLEVLVLSRLNL---RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVA 910 (1113)
T ss_pred eHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccC---CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4556665554 455688888888875443 3333221 2223467889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEE
Q 004974 247 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVR 326 (721)
Q Consensus 247 i~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~ 326 (721)
++|+++|||+|++++||+||++|+++|||+|||+|++ +++.|+|++|++|+ |+||++||+.|+|||+.|.++.|+
T Consensus 911 aLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~Ii 985 (1113)
T PRK11281 911 ALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERLI 985 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCceE
Confidence 9999999999999999999999999999999999999 88999999999999 999999999999999999999999
Q ss_pred ecccCC-ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChH
Q 004974 327 NLSQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHE 404 (721)
Q Consensus 327 N~Sr~~-~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~ 404 (721)
|||.++ .+|+.+.++|+| +|++++++ .+.+++.++|.+..+| +|.|++.+|++++ + +++++||++.. .
T Consensus 986 N~S~~~~~~Rv~i~vgV~Y~sDi~~v~~---iL~eaa~~~p~Vl~~P-~P~V~~~~fgdss--i--~~~lr~wv~~~--~ 1055 (1113)
T PRK11281 986 NWSLSDTVTRVVIKVGVAYGSDLEKVRE---LLLQAATENPRVMKEP-EPQVFFLNFGAST--L--DHELRLYVREL--G 1055 (1113)
T ss_pred eCCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHcCcccccCC-CCEEEEEeccCce--E--EEEEEEEEcCH--h
Confidence 999987 479999999999 99999998 6678899999999998 8899999999995 4 49999999863 5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974 405 EYLCVKEAILLDLLRVISHHRARLATPIRTVQKI 438 (721)
Q Consensus 405 ~~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~ 438 (721)
.++.++++++.+|++.|+++||+||||+++|++.
T Consensus 1056 ~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~ 1089 (1113)
T PRK11281 1056 DRSPTVDELNRRIDRLFRENDINIAFNQLDVFLK 1089 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEec
Confidence 7889999999999999999999999999998854
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=381.81 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 004974 169 LLNFVRSLSTVLAFAYCLSSLIQQAQ-KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL 247 (721)
Q Consensus 169 l~~~l~slliil~~~~~l~rli~~i~-~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi 247 (721)
+.+++.+++ +++++|++.+.+..+. +.+.++.. .+.....++.++++++++++++++++..+|++.+++.+.+|+
T Consensus 833 l~~ll~All-Iliv~~~l~r~l~~lle~~l~~~~~---l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga 908 (1109)
T PRK10929 833 LGSVLIAIL-VFIITTQLVRNLPALLELALLQHLD---LTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA 908 (1109)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 445566554 4455666777776643 44434322 223345788899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 004974 248 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN 327 (721)
Q Consensus 248 ~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N 327 (721)
+|+++|||+|++++||+||++|+++|||++||+|++ +++.|+|++|++|+ |+|+++||+.|+|||+.|.++.|+|
T Consensus 909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN 983 (1109)
T PRK10929 909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN 983 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence 999999999999999999999999999999999999 78999999999999 9999999999999999999999999
Q ss_pred cccCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHH
Q 004974 328 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEE 405 (721)
Q Consensus 328 ~Sr~~~-~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~ 405 (721)
||+.+. +|+.+.++|+| +|++++++ .+.+++.++|.+..+| +|.|++.++++++ + +++++||++. ..+
T Consensus 984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~---iL~eaa~~~~~VL~~P-~P~V~~~~fgdss--i--~~elr~wv~~--~~~ 1053 (1109)
T PRK10929 984 WSLSDSVTRVVLTIPAPADANSEEVTE---ILLTAARRCSLVLDNP-APEVFLVDLQQGI--Q--IFELRIYAAE--MGH 1053 (1109)
T ss_pred cCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHhCccccCCC-CCEEEEEecCCCc--e--EEEEEEEEcC--hhh
Confidence 999885 79999999999 99999999 5668899999999888 7899999999875 4 4999999974 357
Q ss_pred HHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974 406 YLCVKEAILLDLLRVISHHRARLATPIRTVQKI 438 (721)
Q Consensus 406 ~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~ 438 (721)
++.++++++.+|++.|+++||+||||++++++.
T Consensus 1054 ~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~ 1086 (1109)
T PRK10929 1054 RMPLRHEIHQLILAGFREHGIDMPFPPFQMRLE 1086 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEee
Confidence 889999999999999999999999999998865
No 5
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.7e-35 Score=336.32 Aligned_cols=250 Identities=18% Similarity=0.208 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 004974 170 LNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 248 (721)
Q Consensus 170 ~~~l~slliil~~~~~l~rli~~-i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~ 248 (721)
..++.++++ ++++|++.|.+.. +...+..+.+.+.. .-..+.++++++++.+++++.++.+|++.+++-..+|.+
T Consensus 559 ~~ll~avl~-~~~~~~l~r~~~~~L~~~vl~r~~~~~G---~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gAL 634 (835)
T COG3264 559 GALLQAVLL-FLITYVLTRNLPGWLEVRVLQRLDLDAG---TRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGAL 634 (835)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcc---hHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHh
Confidence 455555544 4456667777766 44455555443221 134788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEec
Q 004974 249 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL 328 (721)
Q Consensus 249 gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~ 328 (721)
|+++||++|++++||+||++|+++|||||||||++ |+++|+|.+|+.|+ |+|+++||..|+|||+.|.++.|.||
T Consensus 635 svGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NW 709 (835)
T COG3264 635 SVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINW 709 (835)
T ss_pred hhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeee
Confidence 99999999999999999999999999999999999 88999999999999 99999999999999999999999999
Q ss_pred ccCC-ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHH
Q 004974 329 SQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEY 406 (721)
Q Consensus 329 Sr~~-~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~ 406 (721)
+.++ ..|+.+.++++| +|++++++ .+.++++.||.+..+| +|.|+|.+|+++. ++ ++++||+....-..
T Consensus 710 s~~~~~~R~~i~v~vay~sD~~~V~~---~Ll~~A~~~p~Vl~~P-~P~v~f~~fg~s~--L~--fELr~~v~~~~~~~- 780 (835)
T COG3264 710 SLRDTTTRLVIPVGVAYGSDPELVRE---LLLEAAREHPRVLKDP-APEVFFTAFGASS--LD--FELRVYVAELGDRM- 780 (835)
T ss_pred eccCceEEEEEEecccCCCCHHHHHH---HHHHHHHhCCCccCCC-CCeeEeecccccc--ee--EEEEEEeecccccc-
Confidence 9988 789999999999 99999999 6889999999999999 8999999999984 66 99999999775443
Q ss_pred HHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974 407 LCVKEAILLDLLRVISHHRARLATPIRTVQKI 438 (721)
Q Consensus 407 ~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~ 438 (721)
.++++++..|.+.|++|||++|||++.++..
T Consensus 781 -~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~ 811 (835)
T COG3264 781 -PVRSELNRAILDRFRENGIEIPFPQREVRLK 811 (835)
T ss_pred -chHHHHHHHHHHHHHHcCCCCCCchHheEec
Confidence 4999999999999999999999999987744
No 6
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=2.4e-35 Score=294.82 Aligned_cols=203 Identities=25% Similarity=0.413 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEE
Q 004974 216 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVE 295 (721)
Q Consensus 216 ~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~Ve 295 (721)
++++++++++++++++..+|++...+++++|++|+++|||+|++++|+++|++|++++||++||||++ ++..|+|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~ 77 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE 77 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred EEeceeeEEEEecCCcEEEEeccccccCcEEeccc-CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 004974 296 HVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ-KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH 373 (721)
Q Consensus 296 eIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr-~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~ 373 (721)
+|+|++ |++|++||++++|||+.|.++.|.|||+ .+.+++.+.+.++| +|.++++++.+.+.+.++++|.+...+ .
T Consensus 78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 155 (206)
T PF00924_consen 78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E 155 (206)
T ss_dssp EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence 999999 9999999999999999999999999999 77899999999999 888999999999999999999988766 6
Q ss_pred cEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCcc
Q 004974 374 RRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 428 (721)
Q Consensus 374 P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~~~e~GIei 428 (721)
|.+.+..+++++ +. +.++||++..++.+++.+|++++.++++.|++|||+|
T Consensus 156 ~~~~~~~~~~~~--~~--~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 156 PRVVVDEIGDSS--LE--FRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEEEEEEE-SSS--EE--EEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred CeEEEccccCCc--eE--EEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 789999999875 44 9999999998889999999999999999999999986
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-33 Score=295.15 Aligned_cols=213 Identities=22% Similarity=0.361 Sum_probs=193.7
Q ss_pred chhHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeec
Q 004974 208 NMGFQ-FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIE 286 (721)
Q Consensus 208 ~~~i~-~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~ 286 (721)
...+. ++.++.+++++++++++++..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i--- 156 (316)
T COG0668 80 ETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI--- 156 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE---
Confidence 33444 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcC
Q 004974 287 GY-EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKN 364 (721)
Q Consensus 287 g~-~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~ 364 (721)
+ ++.|+|++|++++ |++|++||++++|||+.+.++.|.||++...+|+.+.+.++| +|.+++++++. +++...
T Consensus 157 -~~~~~G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~---~~~~~~ 231 (316)
T COG0668 157 -GSGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILK---EVLEEL 231 (316)
T ss_pred -CCCceEEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHH---HHHHhc
Confidence 7 7999999999999 999999999999999999999999999998889999999999 99999999554 555555
Q ss_pred CCcc-ccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 004974 365 PQVE-QQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 436 (721)
Q Consensus 365 p~v~-~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~ 436 (721)
+... .++ +|.+.+.++++++ + ++.+++|++..+ ++..+++++..+++.++++||+++||++.+.
T Consensus 232 ~~~~~~~~-~~~v~~~~~~~~~--~--~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~ 296 (316)
T COG0668 232 PEVLKIEP-EPVIGVSELGDSG--I--NIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL 296 (316)
T ss_pred ccccccCC-CcEEEEeeccCCc--e--EEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence 5555 355 6789999999986 3 388998888765 7899999999999999999999999999977
No 8
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=5.3e-18 Score=196.08 Aligned_cols=219 Identities=16% Similarity=0.198 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhh-hheeecCCccCCcEEEEeecCC
Q 004974 210 GFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS-AMIHATRPFVLNEWIQTKIEGY 288 (721)
Q Consensus 210 ~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaG-i~I~~~rPFrVGD~I~I~i~g~ 288 (721)
.+.-+.+++.+++.++++++.+..+|++...+++..+-.-+++.|.+.+++++++.+ |++++.+||++||+|.| +
T Consensus 479 aV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----D 554 (714)
T KOG4629|consen 479 AVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----D 554 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----e
Confidence 366677777788888888888889999999998888877788899999999999986 55789999999999999 6
Q ss_pred CeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCc
Q 004974 289 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV 367 (721)
Q Consensus 289 ~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v 367 (721)
++.-.|++++|++ |.+..+||+.+++||+.+.+..|.|+.|++.....+++.+.. ++.+|+..+.+.+.++++++|..
T Consensus 555 g~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~ 633 (714)
T KOG4629|consen 555 GVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDD 633 (714)
T ss_pred ceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccc
Confidence 7999999999999 999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred cccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 004974 368 EQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 436 (721)
Q Consensus 368 ~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~ 436 (721)
... .+.+.+.++.+.+ .+.+.+.+..+.+.++..+++.-|.++...+.+.+++.||++-++++.+.
T Consensus 634 ~~p--~~~~~i~~~e~~n-~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in 699 (714)
T KOG4629|consen 634 YYP--DLMVVIEEIEDLN-SVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDIN 699 (714)
T ss_pred ccc--chhhHHHhhhhcC-cceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchh
Confidence 843 3467888888866 46666888888888899999999999999999999999999965555443
No 9
>PRK11281 hypothetical protein; Provisional
Probab=88.17 E-value=8.9 Score=48.81 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=14.9
Q ss_pred CCCCccCCCCCcccchhhHHHhhcCChHH
Q 004974 59 GSPYSQINPIPYRSNRIRSYNALQCSPQA 87 (721)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~l~~~pl~ 87 (721)
..+..+..+.+....+...++.+...+.+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1113)
T PRK11281 474 QALKDQFKSLKITVSFSNLWDGLFIALLL 502 (1113)
T ss_pred HHHHHHHhhhhhhhhHHHHHHhhHhHHHH
Confidence 34444444444444556666666654444
No 10
>PRK02509 hypothetical protein; Provisional
Probab=88.08 E-value=36 Score=42.70 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=12.8
Q ss_pred CCCCCcccchhhHHHhhcC
Q 004974 65 INPIPYRSNRIRSYNALQC 83 (721)
Q Consensus 65 ~~~~~~~~~~~~l~~~l~~ 83 (721)
..++|+.-.++.+|+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (973)
T PRK02509 144 SPPLPSPFRLEWLWNLLTQ 162 (973)
T ss_pred CCCCCCcccchHHHHHHHH
Confidence 4567777777777777653
No 11
>PRK12438 hypothetical protein; Provisional
Probab=86.90 E-value=16 Score=45.90 Aligned_cols=18 Identities=6% Similarity=-0.138 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCccCC
Q 004974 413 ILLDLLRVISHHRARLAT 430 (721)
Q Consensus 413 L~~~Il~~~~e~GIeia~ 430 (721)
+..+++-+++-....|-+
T Consensus 540 ~~~RllfA~~f~d~niLl 557 (991)
T PRK12438 540 WFNRLAFAAKYAERNILF 557 (991)
T ss_pred HHHHHHHHHHcCCcceee
Confidence 445566666655555544
No 12
>PRK10263 DNA translocase FtsK; Provisional
Probab=85.71 E-value=11 Score=48.28 Aligned_cols=13 Identities=15% Similarity=-0.082 Sum_probs=5.5
Q ss_pred ccccccCcEEecc
Q 004974 317 NHKFTVNVVRNLS 329 (721)
Q Consensus 317 Ns~l~s~~V~N~S 329 (721)
+.......+.|-.
T Consensus 246 ~~~~~~~~~~~~~ 258 (1355)
T PRK10263 246 RRKRLAEKFINPM 258 (1355)
T ss_pred hhhhhhhhccccc
Confidence 3344444444443
No 13
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=84.40 E-value=58 Score=40.21 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCch
Q 004974 214 AGKAVYSAVWVASASLFMELLGFST 238 (721)
Q Consensus 214 i~~ii~ivI~iIaiiiiL~~lGv~i 238 (721)
...++.++.+++|+++++..+--+.
T Consensus 247 ~~~il~~i~~~~A~~~~~~~~~~~~ 271 (774)
T PF03699_consen 247 AYTILAVIALLCAVLFFINIFRRNW 271 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555555666666666553343
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=83.38 E-value=65 Score=35.73 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=51.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 119 SDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPT-EAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFF 197 (721)
Q Consensus 119 t~~~~~~s~~~~il~~l~~PL~l~i~~i~i~~al~~l~lp~-~~~~~v~~~l~~~l~slliil~~~~~l~rli~~i~~~~ 197 (721)
...+|.+.....+.+.+.+-...++.++.+.... ...+. ...+.+ ..+..++..+.++|+..++.+......
T Consensus 113 ~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~--~~~~~~~~~d~L-----Grl~~ii~~~~l~~~~~~l~~~~~~~~ 185 (340)
T PF12794_consen 113 RHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFA--ENLPDGLARDVL-----GRLAFIILLLLLAVFLWRLLRPGWGLY 185 (340)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhhhhhhH-----HHHHHHHHHHHHHHHHHHHHccccccc
Confidence 4678888555555544444443333333333322 12222 222222 222223334445666666655322222
Q ss_pred HhhcCCCcccchhHHHHHHHHHHHHHHHHH-HHHHHHhCCchHHHHH
Q 004974 198 METTDSGDARNMGFQFAGKAVYSAVWVASA-SLFMELLGFSTQKWLT 243 (721)
Q Consensus 198 ~~~~~~~~~r~~~i~~i~~ii~ivI~iIai-iiiL~~lGv~itsLLa 243 (721)
.. . .+.....++.++..+++++-+ ++++..+|+--+++..
T Consensus 186 ~~--~----~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~~L 226 (340)
T PF12794_consen 186 QP--K----PDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTALQL 226 (340)
T ss_pred cC--C----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22 1 111234566666666555533 4555677877665433
No 15
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=82.57 E-value=80 Score=34.52 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.8
Q ss_pred ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCC
Q 004974 333 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 366 (721)
Q Consensus 333 ~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~ 366 (721)
...+.+.+.++. -+.++..++.+++++.+++...
T Consensus 244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~ 278 (304)
T COG0053 244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFP 278 (304)
T ss_pred eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcC
Confidence 445678888888 7899999999999988876554
No 16
>PRK00068 hypothetical protein; Validated
Probab=81.70 E-value=34 Score=42.99 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHCCCccCC
Q 004974 413 ILLDLLRVISHHRARLAT 430 (721)
Q Consensus 413 L~~~Il~~~~e~GIeia~ 430 (721)
+..+++-+++-....|-+
T Consensus 536 ~~~RllfA~~f~d~~iLl 553 (970)
T PRK00068 536 FLNRLLFAANYAERNFLL 553 (970)
T ss_pred HHHHHHHHHHcCCCcEEe
Confidence 444555555555555443
No 17
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=80.13 E-value=85 Score=38.08 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=6.6
Q ss_pred HHHHcCCCcccc
Q 004974 359 KVLAKNPQVEQQ 370 (721)
Q Consensus 359 e~L~~~p~v~~~ 370 (721)
.+|+.+|-...+
T Consensus 403 NYL~~~~i~~~~ 414 (679)
T TIGR01654 403 NYLSKFPIVSQK 414 (679)
T ss_pred HHHHhCCCcCCC
Confidence 456666655543
No 18
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=78.69 E-value=1.4e+02 Score=36.78 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLG 235 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lG 235 (721)
.+.+.++++.+++++.++.++..||
T Consensus 423 ~~~~l~~lr~l~~~~~vl~ll~a~~ 447 (741)
T PRK11465 423 LSAALKTARILTVCVAVMLLLNAWG 447 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555555555555555
No 19
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=77.09 E-value=1.5e+02 Score=36.48 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=22.0
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 004974 228 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLS 265 (721)
Q Consensus 228 iiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~ia 265 (721)
+.+|......++.+..+..++-++++++++..+.+..-
T Consensus 285 l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~ 322 (709)
T COG2274 285 LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTR 322 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555556666677777777776553
No 20
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=76.81 E-value=70 Score=34.71 Aligned_cols=20 Identities=0% Similarity=0.017 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCCccccc
Q 004974 352 SIVADMRKVLAKNPQVEQQR 371 (721)
Q Consensus 352 ~i~~~l~e~L~~~p~v~~~~ 371 (721)
++.+.+.+.++++.--..-|
T Consensus 252 ~~~~~I~~~f~~~gI~ip~p 271 (286)
T PRK10334 252 DVLERIKREFDAAGISFPYP 271 (286)
T ss_pred HHHHHHHHHHHHCCCcCCCC
Confidence 45556667666665444333
No 21
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.45 E-value=1e+02 Score=39.64 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=15.5
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHH
Q 004974 119 SDNSWKKSKTHHVMTSYIQPLMLWTGAIL 147 (721)
Q Consensus 119 t~~~~~~s~~~~il~~l~~PL~l~i~~i~ 147 (721)
..++|.+.....+.+.+.+-+.+++.+++
T Consensus 586 ~HF~w~~~~v~~~~~~~~~~~~~~~pl~~ 614 (1109)
T PRK10929 586 AHFGWPRERVARAMRYYLLSIGLIVPLIM 614 (1109)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788886655555544443333333333
No 22
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=69.68 E-value=2.5e+02 Score=34.60 Aligned_cols=71 Identities=7% Similarity=-0.052 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHH----HHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Q 004974 186 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVA----SASLFMELLGFSTQKWLTAGGLGTVLLTLAG 256 (721)
Q Consensus 186 l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iI----aiiiiL~~lGv~itsLLaslGi~gvalgLAa 256 (721)
+...+....+++.++......++.....+++...-+++.+ +.++.|...+++.-..+..+-..|++++++.
T Consensus 264 idy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~ 338 (727)
T COG1033 264 IDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLS 338 (727)
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666665544444444444444433333221 1222233335555444544555555555443
No 23
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=66.20 E-value=3.4e+02 Score=33.90 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 004974 213 FAGKAVYSAVWVASASLFMELLG 235 (721)
Q Consensus 213 ~i~~ii~ivI~iIaiiiiL~~lG 235 (721)
...++++.+++++++..++..||
T Consensus 510 ~~~~~~rl~~~~~~i~l~l~~wg 532 (835)
T COG3264 510 QLLRLIRLLLLLIAIPLVLYVWG 532 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 34567777788888888887887
No 24
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=65.35 E-value=17 Score=33.78 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=31.6
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEecc
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNH 318 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs 318 (721)
.++||+|.. .+|..|+|.+|+=-. ..++..+|..+.+=-+
T Consensus 53 Lk~Gd~VvT---~gGi~G~Vv~i~~~~-v~lei~~g~~i~~~r~ 92 (106)
T PRK05585 53 LAKGDEVVT---NGGIIGKVTKVSEDF-VIIELNDDTEIKIQKS 92 (106)
T ss_pred cCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEEEhH
Confidence 689999987 488999999998765 7888888866655433
No 25
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=64.74 E-value=2.8e+02 Score=33.85 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhHHHHhh
Q 004974 245 GGLGTVLLTLAGREIFTNFL 264 (721)
Q Consensus 245 lGi~gvalgLAaqdiL~N~i 264 (721)
.|++..++++|+-..+.-+|
T Consensus 442 sGl~s~il~iGllP~fE~~F 461 (700)
T COG1480 442 SGLLSGILVLGLLPYFEALF 461 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555444
No 26
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=63.84 E-value=22 Score=31.77 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.6
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEE
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 315 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~I 315 (721)
.++||+|.. .+|..|+|.+|+=-+ ..++..+|..+.+
T Consensus 38 L~~Gd~VvT---~gGi~G~V~~i~d~~-v~vei~~g~~i~~ 74 (84)
T TIGR00739 38 LKKGDKVLT---IGGIIGTVTKIAENT-IVIELNDNTEITF 74 (84)
T ss_pred CCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 689999998 588999999999766 6777767655544
No 27
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=62.42 E-value=2.5e+02 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLGF--STQKWLTAGGLGTVLLTL 254 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lGv--~itsLLaslGi~gvalgL 254 (721)
...+++.++.+++++..+++...+.. +....--++|-+++.+++
T Consensus 122 ~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~ 167 (340)
T PF12794_consen 122 VQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILL 167 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHH
Confidence 56677888888887777776665543 333333344544444443
No 28
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=61.58 E-value=1.2e+02 Score=33.75 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004974 172 FVRSLSTVLAFAYCLSSLI 190 (721)
Q Consensus 172 ~l~slliil~~~~~l~rli 190 (721)
++.+++++++..|+..++.
T Consensus 45 ligai~~~li~~~~~~~~~ 63 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVL 63 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555655666666644443
No 29
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=57.94 E-value=2.9e+02 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=11.9
Q ss_pred HhCCchHHHHHHHHHHHHHHHH
Q 004974 233 LLGFSTQKWLTAGGLGTVLLTL 254 (721)
Q Consensus 233 ~lGv~itsLLaslGi~gvalgL 254 (721)
++...-.+||.+...+-+++++
T Consensus 397 lLq~EdyALL~GSl~LF~iLa~ 418 (430)
T PF06123_consen 397 LLQSEDYALLMGSLLLFIILAL 418 (430)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 4455555777665555444443
No 30
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=56.78 E-value=29 Score=31.96 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=31.2
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccc
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHK 319 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~ 319 (721)
.+.||.|.. .||..|+|.+|+=.. ..|...++..+.+--+.
T Consensus 44 L~kGD~VvT---~gGi~G~V~~v~d~~-v~I~l~~~~~i~~~k~a 84 (97)
T COG1862 44 LKKGDEVVT---IGGIVGTVTKVGDDT-VEIELGDGTKIKFEKEA 84 (97)
T ss_pred ccCCCEEEE---cCCeEEEEEEEecCc-EEEEECCCeEEEEEHHH
Confidence 589999987 588999999999876 66666677666654433
No 31
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=56.64 E-value=2.5e+02 Score=29.20 Aligned_cols=38 Identities=21% Similarity=0.090 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004974 81 LQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKS 119 (721)
Q Consensus 81 l~~~pl~~~llial~ill~a~~~l~~llr~l~r~l~~rt 119 (721)
|.+.++++|-++.-+ ...+.++++.+++++.+++..+.
T Consensus 5 LlPR~w~~Qgv~~Gi-~~a~GY~~Gv~~~~l~r~~~~~~ 42 (208)
T PF15420_consen 5 LLPRPWLFQGVVSGI-SAAIGYGLGVFLRWLWRRLGLPR 42 (208)
T ss_pred cCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 345677767665543 44455667888887777665543
No 32
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=53.81 E-value=5.1e+02 Score=31.86 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 171 NFVRSLSTVLAFAYCLSSLIQQAQKF 196 (721)
Q Consensus 171 ~~l~slliil~~~~~l~rli~~i~~~ 196 (721)
.+++..+.-.+.+|+..++-.+..-+
T Consensus 75 aFliGa~~S~laGyiGM~vAt~aN~R 100 (682)
T PF03030_consen 75 AFLIGALCSALAGYIGMRVATRANVR 100 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 44444444555677777666544333
No 33
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=51.88 E-value=1.6e+02 Score=32.34 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHHH
Q 004974 210 GFQFAGKAVYSAVWVASASLFME----LLGFSTQKWLTAGGLGTVLL 252 (721)
Q Consensus 210 ~i~~i~~ii~ivI~iIaiiiiL~----~lGv~itsLLaslGi~gval 252 (721)
..+.+....++++|++++.+++. .+|.++..++...++.+..+
T Consensus 178 ~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~~pli 224 (298)
T PF11449_consen 178 LQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGILQPLI 224 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchHHHHH
Confidence 45667778888899888877765 45888888877766654443
No 34
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=50.72 E-value=44 Score=31.42 Aligned_cols=37 Identities=5% Similarity=-0.097 Sum_probs=28.8
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEE
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 315 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~I 315 (721)
.++||+|.. .||..|+|.+|+=-+ ..+...+|..+.+
T Consensus 39 Lk~GD~VvT---~gGi~G~V~~I~d~~-v~leia~gv~i~~ 75 (109)
T PRK05886 39 LQPGDRVHT---TSGLQATIVGITDDT-VDLEIAPGVVTTW 75 (109)
T ss_pred cCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 689999988 588999999998655 6776666655543
No 35
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=50.43 E-value=2.9e+02 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004974 173 VRSLSTVLAFAYCLSSLIQQAQKFFMETTDSG 204 (721)
Q Consensus 173 l~slliil~~~~~l~rli~~i~~~~~~~~~~~ 204 (721)
+.+++-+++.+|+++.+-..+..++....+..
T Consensus 28 ~~sl~s~i~a~~vA~~fy~~~~~~~~~~i~~~ 59 (182)
T COG1286 28 VLSLLSWILAAFVASLFYKPLAPLLREYIPYP 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCh
Confidence 34455555666666666665556665555443
No 36
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=48.04 E-value=37 Score=29.68 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=24.4
Q ss_pred eecCCccCCcEEEE-eecCCCeEEEEEEEecee
Q 004974 270 HATRPFVLNEWIQT-KIEGYEVSGTVEHVGWWS 301 (721)
Q Consensus 270 ~~~rPFrVGD~I~I-~i~g~~v~G~VeeIgL~s 301 (721)
.-+|.|++||.+.+ .+++++.+|......+.+
T Consensus 24 kNDRdf~VGD~L~L~E~~~~~YTGr~~~~~Ity 56 (72)
T PF12961_consen 24 KNDRDFQVGDILVLREWDNGEYTGREIEAEITY 56 (72)
T ss_pred ecCCCCCCCCEEEEEEecCCCccccEEEEEEEE
Confidence 46889999999988 345567788877666655
No 37
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=47.90 E-value=4.4e+02 Score=32.46 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 004974 212 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLT 253 (721)
Q Consensus 212 ~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalg 253 (721)
.++..+..+++..+++..++.. .+.+..++|.-.+.+-..+
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~-~lTlG~LiAf~~l~~~f~~ 424 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEG-ELTLGQLVAFNMLAGYFIS 424 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh
Confidence 3444444444444444444433 5556666666555544443
No 38
>PRK10845 colicin V production protein; Provisional
Probab=47.48 E-value=3e+02 Score=27.34 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHH
Q 004974 175 SLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELL-GFSTQKWLT 243 (721)
Q Consensus 175 slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~l-Gv~itsLLa 243 (721)
+.++++++.|++.+++..+.+.+.+...-+ .-++.+..+-.+++..+++..++.++..+ ..+-...+.
T Consensus 65 af~~iFi~v~~~~~i~~~~l~~l~~~~~Lg-~~dr~lG~ifG~~rg~liv~v~l~~l~~~~~~~~~~~w~ 133 (162)
T PRK10845 65 AIAVLFIATLIVGAIVNYVIGQLVEKTGLS-GTDRVLGVCFGALRGVLIVAAILFFLDTFTGFSKSEDWS 133 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 344445556666666655444444433322 22444556666677666666666565543 444344444
No 39
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=47.42 E-value=2.5e+02 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHH
Q 004974 214 AGKAVYSAVWVASASLFMELLGFSTQKW 241 (721)
Q Consensus 214 i~~ii~ivI~iIaiiiiL~~lGv~itsL 241 (721)
..++..+++++++.+..+..+|+-++++
T Consensus 72 ~~~~~~~~~~~~~y~~~~~~lGf~~at~ 99 (141)
T PF07331_consen 72 WKRVLLVLGLLVLYVLLLEYLGFIIATF 99 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456666666666666667777654443
No 40
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=46.92 E-value=5.5e+02 Score=31.25 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004974 92 PGIAIIVFATWGLGPLMRQSRNLLLRK 118 (721)
Q Consensus 92 ial~ill~a~~~l~~llr~l~r~l~~r 118 (721)
+.+++++++++.+...++..++...+|
T Consensus 173 ~~~~i~~~~~l~v~~~~~~~K~~gI~r 199 (679)
T TIGR01654 173 ALLLIVIFVLFLIYYLMINMKRVAIYR 199 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332333333343343333333
No 41
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=45.93 E-value=3.3e+02 Score=30.40 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 84 SPQALKLVPGIAIIVFATWGLGPLMRQS 111 (721)
Q Consensus 84 ~pl~~~llial~ill~a~~~l~~llr~l 111 (721)
++..-.++-++..+++..|+...++.++
T Consensus 39 n~~v~~ligai~~~li~~~~~~~~~~~~ 66 (356)
T COG4956 39 NEYVDALIGAIIFFLISFWFGKYVLNWL 66 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443235555555555566555555543
No 42
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=44.75 E-value=1e+02 Score=30.30 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=53.1
Q ss_pred hheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEecc-C
Q 004974 267 AMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-L 345 (721)
Q Consensus 267 i~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~y-t 345 (721)
++|++..++.-||++++.+...+..-.+....|+...+ -.+.+|+.-+.-...+|.+-...-.+.-.-.|.| +
T Consensus 15 vfIiL~~~l~~~~~~eVef~~~n~~~~~~~~~~~N~yt------~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ikyys 88 (142)
T PF14545_consen 15 VFIILRDPLDEEDTVEVEFESNNKPIRRVPAKWENPYT------LQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIKYYS 88 (142)
T ss_pred EEEEEeCCCCCCCeEEEEEEeCCCeeEeccceEECCEE------EEEECchhcCCCCceEEEEEEECCEEEEEEeEEEEe
Confidence 67899999999999999655444222233333332112 2456777766666666666554555556667788 8
Q ss_pred CHHHHHHHHH
Q 004974 346 DVHKINSIVA 355 (721)
Q Consensus 346 D~ekv~~i~~ 355 (721)
+.+.+..+++
T Consensus 89 ~~~el~~lL~ 98 (142)
T PF14545_consen 89 RMRELEQLLR 98 (142)
T ss_pred cHHHHHHHHH
Confidence 9888887543
No 43
>PRK12438 hypothetical protein; Provisional
Probab=43.46 E-value=8.3e+02 Score=31.39 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 004974 211 FQFAGKAVYSAV 222 (721)
Q Consensus 211 i~~i~~ii~ivI 222 (721)
+++++-++.+++
T Consensus 165 LPf~~~l~~~l~ 176 (991)
T PRK12438 165 LPFYRSVLNWLF 176 (991)
T ss_pred cHHHHHHHHHHH
Confidence 555555544443
No 44
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=43.22 E-value=2.1e+02 Score=35.49 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCc
Q 004974 415 LDLLRVISHHRAR 427 (721)
Q Consensus 415 ~~Il~~~~e~GIe 427 (721)
++|.+.|+++||+
T Consensus 468 ~~i~~~L~~~gi~ 480 (764)
T TIGR02865 468 EKIIRALNKNGIP 480 (764)
T ss_pred HHHHHHHHHCCCe
Confidence 5588888888885
No 45
>PRK03557 zinc transporter ZitB; Provisional
Probab=42.40 E-value=4.9e+02 Score=28.39 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=14.9
Q ss_pred EEEEEEecc-CCHHHHHHHHHHHHHHHHcCCC
Q 004974 336 IKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 366 (721)
Q Consensus 336 i~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~ 366 (721)
+.+.+.++- .+. .++.+++++.+++...
T Consensus 253 v~~hv~v~~~~~~---~~i~~~i~~~l~~~~~ 281 (312)
T PRK03557 253 MTLHVQVIPPHDH---DALLDRIQDYLMHHYQ 281 (312)
T ss_pred EEEEEEECCCCCH---HHHHHHHHHHHHHhCC
Confidence 344444443 333 3455578777766543
No 46
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=41.76 E-value=40 Score=27.12 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004974 165 VKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTD 202 (721)
Q Consensus 165 v~~~l~~~l~slliil~~~~~l~rli~~i~~~~~~~~~ 202 (721)
+..++++++.++++ ++++|++.++++.+.+...++.+
T Consensus 11 ii~~lP~iv~AilI-l~vG~~va~~v~~~~~~~l~~~~ 47 (53)
T PF05552_consen 11 IIAYLPNIVGAILI-LIVGWWVAKFVRKLVRRLLEKRG 47 (53)
T ss_dssp --GGHCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 33556777776664 45677788888776555555543
No 47
>PRK11462 putative transporter; Provisional
Probab=41.72 E-value=5.7e+02 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhccccccch
Q 004974 105 GPLMRQSRNLLLRKSDNSWKKS 126 (721)
Q Consensus 105 ~~llr~l~r~l~~rt~~~~~~s 126 (721)
.-+..-+...+..|++.+|.+.
T Consensus 58 Dai~Dp~~G~~~D~t~~r~Gr~ 79 (460)
T PRK11462 58 DAISDPCMGLLADRTRSRWGKF 79 (460)
T ss_pred HHHHhhhheehhccCCCCCCCc
Confidence 3334344455777888888773
No 48
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=41.35 E-value=68 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.2
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEece-eeEEEEecCCcEEEEe
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWW-SPTIVRGEDREAVHIP 316 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~-stT~IRt~Dg~~V~IP 316 (721)
.++||+|.. .||..|+|.+|+-- .+..+.. +|..+.+=
T Consensus 37 Lk~GD~VvT---~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~ 75 (113)
T PRK06531 37 IQKGDEVVT---IGGLYGTVDEVDTEAKTIVLDV-DGVYLTFE 75 (113)
T ss_pred cCCCCEEEE---CCCcEEEEEEEecCCCEEEEEE-CCEEEEEE
Confidence 689999987 58899999999852 1145554 56554443
No 49
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=40.61 E-value=7e+02 Score=33.04 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 004974 213 FAGKAVYSAVWVASASLFMELLGF 236 (721)
Q Consensus 213 ~i~~ii~ivI~iIaiiiiL~~lGv 236 (721)
.++.++...+..+..++.|..+|.
T Consensus 1006 afs~ILdTnLTTLIA~lPLf~fGt 1029 (1403)
T PRK12911 1006 AFSAIFDSNLTTILASALLLMLDT 1029 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444555555554
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=40.13 E-value=5.2e+02 Score=29.04 Aligned_cols=11 Identities=0% Similarity=-0.182 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004974 216 KAVYSAVWVAS 226 (721)
Q Consensus 216 ~ii~ivI~iIa 226 (721)
.+++.++.+++
T Consensus 167 ~~l~~~~~~~~ 177 (386)
T PF05975_consen 167 RLLRLILNALI 177 (386)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 51
>PRK05415 hypothetical protein; Provisional
Probab=39.22 E-value=6.1e+02 Score=28.58 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHH----HHHHHHHhCCchHHHHH-------HHHH
Q 004974 179 VLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVAS----ASLFMELLGFSTQKWLT-------AGGL 247 (721)
Q Consensus 179 il~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIa----iiiiL~~lGv~itsLLa-------slGi 247 (721)
+++++|.-.++|+.+.+.|.-+... ...+++++.++.-++++-+ .-+.++.+|.++.+.+. +.|.
T Consensus 227 ~l~v~~~n~rmI~~ia~lYG~~lg~----~~~~rL~r~V~~~la~~G~~e~~~~l~~~~l~~~l~~~ls~r~~QGv~~G~ 302 (341)
T PRK05415 227 MAFIAWRNLRLIRRIAELYGIELGY----LSRIRLFRLVLANIAFAGASELVDDLGMDWLSQDLAAKLSARAAQGVGNGL 302 (341)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456777888888777777544321 1124455555444444332 23344556666554332 2344
Q ss_pred HHHHHHHHhhhHH
Q 004974 248 GTVLLTLAGREIF 260 (721)
Q Consensus 248 ~gvalgLAaqdiL 260 (721)
++..+|+++-+++
T Consensus 303 lTarlG~~Amelc 315 (341)
T PRK05415 303 LTARLGIKAMELC 315 (341)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555554433
No 52
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=38.81 E-value=9e+02 Score=30.43 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=8.8
Q ss_pred ccCCCCCCchhhhHh
Q 004974 671 IEEGMPSSQPVVKEL 685 (721)
Q Consensus 671 ~~~~~~~~~~~~~~~ 685 (721)
-|+||....+|++++
T Consensus 778 ~~~~~~~~~~~~~~~ 792 (810)
T TIGR00844 778 SEDEMADDEAESENM 792 (810)
T ss_pred cchhhccchhccccc
Confidence 555665556666654
No 53
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=38.71 E-value=25 Score=30.11 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=17.7
Q ss_pred HHHhhhhhh-eeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEE
Q 004974 260 FTNFLSSAM-IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 305 (721)
Q Consensus 260 L~N~iaGi~-I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~I 305 (721)
+.|..+|-| +-...-|..||+|+ +..|....|.| +||.+ |.+
T Consensus 8 v~~~vag~fa~ps~atf~~gdrvr-kksgaawqg~v--vgwy~-t~l 50 (78)
T PF06442_consen 8 VSNPVAGQFAFPSNATFGMGDRVR-KKSGAAWQGQV--VGWYC-TKL 50 (78)
T ss_dssp -------------S-SS-TT-EEE-ESSSS--EEEE--EEEE---SS
T ss_pred cccccccceecccccccccchhhh-hcccccccceE--eEEEe-ccc
Confidence 455566644 44667999999999 45666667877 58888 655
No 54
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=37.39 E-value=56 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=16.1
Q ss_pred CccCCcEEEEee-cCCCeEEEEEEEe
Q 004974 274 PFVLNEWIQTKI-EGYEVSGTVEHVG 298 (721)
Q Consensus 274 PFrVGD~I~I~i-~g~~v~G~VeeIg 298 (721)
+|++||.|.|.- ...+..|.|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 478999999821 1134566776664
No 55
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=36.62 E-value=81 Score=26.45 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=35.0
Q ss_pred ccCCcEEEEe--ecCCCeEEEEEEEeceeeEEEE-ecCCcEEEEeccccc
Q 004974 275 FVLNEWIQTK--IEGYEVSGTVEHVGWWSPTIVR-GEDREAVHIPNHKFT 321 (721)
Q Consensus 275 FrVGD~I~I~--i~g~~v~G~VeeIgL~stT~IR-t~Dg~~V~IPNs~l~ 321 (721)
|.+||.|+++ .+.|...-.|..+|.=. +|+ ..-|..|.+|-+.|-
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDi--kikC~gCg~~imlpR~~fe 49 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADI--KIKCLGCGRQIMLPRSKFE 49 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcE--EEEECCCCCEEEEeHHHHH
Confidence 7899999994 45677888999998875 555 456889999977763
No 56
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=36.09 E-value=2.4e+02 Score=35.04 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc------------------hHHHHHHHHH--------HHHHHHHHhhhHHHHhh
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLGFS------------------TQKWLTAGGL--------GTVLLTLAGREIFTNFL 264 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lGv~------------------itsLLaslGi--------~gvalgLAaqdiL~N~i 264 (721)
-.++.++..+++.+..++.+|..+|.+ +++++.-+|+ ++++.||.+|+.+-.-+
T Consensus 509 ~~Fl~~Ag~iI~~~~iviw~l~~~~~~g~~~~~~~~S~l~~ig~~i~Pi~~plG~~~~nW~~~vali~G~~AKE~vv~tl 588 (772)
T PRK09554 509 KGFVLRAGKVIIIVSIFIGALNSFSLSGKIVDNINDSALASVSRVITPVLKPIGVHEDNWQATVGLFTGAMAKEVVVGTL 588 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 557778888888877888888888632 1233333444 46667999999988888
Q ss_pred hhhh
Q 004974 265 SSAM 268 (721)
Q Consensus 265 aGi~ 268 (721)
+.++
T Consensus 589 ~~ly 592 (772)
T PRK09554 589 NTLY 592 (772)
T ss_pred HHHH
Confidence 7765
No 57
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=35.67 E-value=4.3e+02 Score=31.17 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 004974 104 LGPLMRQ 110 (721)
Q Consensus 104 l~~llr~ 110 (721)
+.++...
T Consensus 106 lSPiafl 112 (505)
T PF06638_consen 106 LSPIAFL 112 (505)
T ss_pred HhhHHHH
Confidence 4566553
No 58
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=35.43 E-value=3.9e+02 Score=31.25 Aligned_cols=14 Identities=7% Similarity=0.605 Sum_probs=9.7
Q ss_pred HHHHHhhccccccc
Q 004974 112 RNLLLRKSDNSWKK 125 (721)
Q Consensus 112 ~r~l~~rt~~~~~~ 125 (721)
...+..|++.+|.+
T Consensus 68 ~G~i~D~t~~r~Gr 81 (467)
T COG2211 68 MGFIVDRTRSRWGR 81 (467)
T ss_pred heeeeccccccccc
Confidence 34466777888877
No 59
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.34 E-value=12 Score=40.45 Aligned_cols=11 Identities=36% Similarity=0.175 Sum_probs=0.0
Q ss_pred HhCCchHHHHH
Q 004974 233 LLGFSTQKWLT 243 (721)
Q Consensus 233 ~lGv~itsLLa 243 (721)
.+|-+...+++
T Consensus 131 ~~GAs~WtiLa 141 (381)
T PF05297_consen 131 ELGASFWTILA 141 (381)
T ss_dssp -----------
T ss_pred HhhhHHHHHHH
Confidence 44554444443
No 60
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=35.33 E-value=7.2e+02 Score=28.34 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=4.9
Q ss_pred HHHhhhHHHHhh
Q 004974 253 TLAGREIFTNFL 264 (721)
Q Consensus 253 gLAaqdiL~N~i 264 (721)
|.|+-.+-.+++
T Consensus 178 g~Glv~iP~~l~ 189 (471)
T PF04791_consen 178 GYGLVAIPRDLW 189 (471)
T ss_pred hccHHHHHHHHH
Confidence 334444444443
No 61
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=34.84 E-value=1.6e+02 Score=28.95 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.4
Q ss_pred hheeecCCccCCcEEEE
Q 004974 267 AMIHATRPFVLNEWIQT 283 (721)
Q Consensus 267 i~I~~~rPFrVGD~I~I 283 (721)
.-+-+.+|.++||.|.+
T Consensus 89 q~~~f~~PV~~GDtL~~ 105 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYC 105 (159)
T ss_pred eEEEEeCCccCCCEEEE
Confidence 34678899999999986
No 62
>PRK03612 spermidine synthase; Provisional
Probab=34.75 E-value=8.2e+02 Score=28.79 Aligned_cols=34 Identities=21% Similarity=-0.005 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTA 244 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLas 244 (721)
+..+..+=.++--+++.++++..+|...+.++++
T Consensus 150 ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 150 VLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred hHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3334444444444455566666888876655443
No 63
>PRK00068 hypothetical protein; Validated
Probab=34.09 E-value=1.1e+03 Score=30.21 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 004974 211 FQFAGKAVYSAV 222 (721)
Q Consensus 211 i~~i~~ii~ivI 222 (721)
+++++-+..+++
T Consensus 163 LPf~~~l~~~l~ 174 (970)
T PRK00068 163 LPFYRSLLSYLL 174 (970)
T ss_pred hHHHHHHHHHHH
Confidence 555555555443
No 64
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=34.08 E-value=6.3e+02 Score=27.22 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcC
Q 004974 334 WRIKTHLAISH-LDVHKINSIVADMRKVLAKN 364 (721)
Q Consensus 334 ~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~ 364 (721)
..+.+++.++. .+.++..++.+++++.+++.
T Consensus 243 ~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~ 274 (299)
T PRK09509 243 RFIQLHLEMEDNLPLVQAHMIADQVEQALLRR 274 (299)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 34567777776 67888888888999988765
No 65
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.06 E-value=5.6e+02 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 004974 141 LWTGAILICRAL 152 (721)
Q Consensus 141 l~i~~i~i~~al 152 (721)
+++.++.+..++
T Consensus 103 l~lg~~aLlsgi 114 (226)
T COG4858 103 LFLGAMALLSGI 114 (226)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 66
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=33.85 E-value=1e+03 Score=29.73 Aligned_cols=13 Identities=0% Similarity=0.184 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 004974 220 SAVWVASASLFME 232 (721)
Q Consensus 220 ivI~iIaiiiiL~ 232 (721)
+++++.|+-..|.
T Consensus 209 ~~~l~~a~~y~L~ 221 (774)
T PF03699_consen 209 LFFLLKAVGYWLD 221 (774)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 67
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=33.51 E-value=8.9e+02 Score=28.83 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004974 180 LAFAYCLSSLIQQAQKF 196 (721)
Q Consensus 180 l~~~~~l~rli~~i~~~ 196 (721)
+.+.|++..+-+.+..+
T Consensus 353 ~f~~wIF~SL~~Tlk~L 369 (518)
T KOG2568|consen 353 AFIYWIFISLAKTLKKL 369 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555544444333
No 68
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=32.88 E-value=1.3e+02 Score=24.40 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CccCCcEEEEee--cCCCeEEEEEEEec
Q 004974 274 PFVLNEWIQTKI--EGYEVSGTVEHVGW 299 (721)
Q Consensus 274 PFrVGD~I~I~i--~g~~v~G~VeeIgL 299 (721)
-|++||.|.+.. +++...|+|.++.=
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~ 29 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG 29 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC
Confidence 489999999977 77778898887754
No 69
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=32.83 E-value=3.1e+02 Score=28.51 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 004974 137 QPLMLWTGAILIC 149 (721)
Q Consensus 137 ~PL~l~i~~i~i~ 149 (721)
-|+++|+.+.+..
T Consensus 63 vPlLI~L~l~l~~ 75 (202)
T PF07290_consen 63 VPLLIWLVLLLSS 75 (202)
T ss_pred cHHHHHHHHHHHH
Confidence 3666666554433
No 70
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=32.64 E-value=5.6e+02 Score=31.79 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=8.2
Q ss_pred ecCCccCCcEEEE
Q 004974 271 ATRPFVLNEWIQT 283 (721)
Q Consensus 271 ~~rPFrVGD~I~I 283 (721)
....|.+ |+|+-
T Consensus 309 TR~Ay~l-d~v~~ 320 (885)
T COG1615 309 TREAYGL-DDVTY 320 (885)
T ss_pred HHHHhCC-ceecc
Confidence 3447888 88876
No 71
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=32.16 E-value=6.2e+02 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 004974 214 AGKAVYSAVWVASASLFMELLG 235 (721)
Q Consensus 214 i~~ii~ivI~iIaiiiiL~~lG 235 (721)
++.++...+..++.++.+..+|
T Consensus 199 ~~~ii~ttltti~~flpl~~~~ 220 (246)
T TIGR00966 199 LSRTINTSLTTLLAVLALYVFG 220 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444444
No 72
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=32.14 E-value=8.2e+02 Score=28.54 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 004974 130 HVMTSYIQPLMLWTGAILICRALD 153 (721)
Q Consensus 130 ~il~~l~~PL~l~i~~i~i~~al~ 153 (721)
+.++.+..|+..++++++++..+.
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~ 176 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFR 176 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777666
No 73
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=31.89 E-value=5.6e+02 Score=25.98 Aligned_cols=74 Identities=20% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHh
Q 004974 186 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS-LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNF 263 (721)
Q Consensus 186 l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaii-iiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~ 263 (721)
+.-+++.+.++-.|+........ ...+...+.+.+++++. ++.-.+-+++.+.+..+ .+.+.+|++..-+.+||
T Consensus 123 ~~~~vDGl~~R~iRr~~~g~eSp---~~~h~a~~~~~~~~~~~~~lyL~lP~~i~P~~~~l-~~a~llg~av~~t~s~F 197 (198)
T PF14348_consen 123 LAALVDGLVRRDIRRFGFGRESP---FVYHHAKRSVIPLLILPWVLYLSLPFSIPPNLVPL-PAALLLGLAVWITASNF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHcccccChHHHHH-HHHHHHHHHHHHHHHhc
Confidence 33445554444444433222221 23445555555555555 33334445544444443 44555666666555554
No 74
>COG4425 Predicted membrane protein [Function unknown]
Probab=31.88 E-value=6.8e+02 Score=29.50 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=18.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 82 QCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLL 115 (721)
Q Consensus 82 ~~~pl~~~llial~ill~a~~~l~~llr~l~r~l 115 (721)
.+.++++|-++. ++.+.+.++++..++++.+.+
T Consensus 70 LPr~~l~qgv~s-gf~~A~Gy~~gv~~~wl~~y~ 102 (588)
T COG4425 70 LPRPWLFQGVLS-GFSLAAGYGAGVFLHWLWRYL 102 (588)
T ss_pred cCchHHHHHHHH-HHHHHhhhHHHHHHHHHHHHh
Confidence 355666554443 344444556777777665543
No 75
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=31.53 E-value=2.6e+02 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004974 174 RSLSTVLAFAYCLSSLIQQAQKFFMETTDS 203 (721)
Q Consensus 174 ~slliil~~~~~l~rli~~i~~~~~~~~~~ 203 (721)
...++...++|+++++...+...+..+.-.
T Consensus 9 ~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~ 38 (82)
T PF11282_consen 9 SGALIAGGLAYGLYFLTTSIAASFASKPIH 38 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 334445567888888888888888777544
No 76
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=31.30 E-value=2.5e+02 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=31.7
Q ss_pred EEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccc
Q 004974 291 SGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ 330 (721)
Q Consensus 291 ~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr 330 (721)
.|+|.++.=.. ..+.-.++-.-.||.+.+....+.+...
T Consensus 9 ~g~V~~v~~~g-~~V~l~~~~~g~ip~~~l~~~~~~~~~~ 47 (74)
T PF00575_consen 9 EGKVTSVEDFG-VFVDLGNGIEGFIPISELSDDRIDDPSE 47 (74)
T ss_dssp EEEEEEEETTE-EEEEESTSSEEEEEGGGSSSSEESSSHG
T ss_pred EEEEEEEECCE-EEEEECCcEEEEEEeehhcCcccccccc
Confidence 49999999887 7787778999999999999875554444
No 77
>COG4258 Predicted exporter [General function prediction only]
Probab=31.20 E-value=1.1e+03 Score=28.99 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH---HHHHHHHhh
Q 004974 214 AGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG---TVLLTLAGR 257 (721)
Q Consensus 214 i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~---gvalgLAaq 257 (721)
+..++.+.+--++.+..+..++++-...+-+.|+. |++++|.+-
T Consensus 730 lttl~alala~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlA 776 (788)
T COG4258 730 LTTLLALALAMLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLA 776 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHH
Confidence 44556666666666677778888877777776654 555555543
No 78
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=30.99 E-value=72 Score=29.00 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 004974 223 WVASASLFMELLGFST-QKWLTAGGLGTVLLTLAGREIFTNFLSSA 267 (721)
Q Consensus 223 ~iIaiiiiL~~lGv~i-tsLLaslGi~gvalgLAaqdiL~N~iaGi 267 (721)
+.+.++++|..+-+++ -+++.++-++|++-|+...++++-|..|+
T Consensus 5 iaV~vm~~L~LlR~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gm 50 (88)
T PF13726_consen 5 IAVLVMIVLSLLRVNVVLALLIAALVGGLVGGLGLGETMSAFIDGM 50 (88)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3444455556666663 36777777778888888888888888775
No 79
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.92 E-value=16 Score=39.59 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 004974 218 VYSAVWVA 225 (721)
Q Consensus 218 i~ivI~iI 225 (721)
+.++||+-
T Consensus 177 laiLIWlY 184 (381)
T PF05297_consen 177 LAILIWLY 184 (381)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444444
No 80
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=30.85 E-value=1.2e+03 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCccC-------CCcEEEEEeec
Q 004974 416 DLLRVISHHRARLA-------TPIRTVQKIFS 440 (721)
Q Consensus 416 ~Il~~~~e~GIeia-------~P~~tv~~~~~ 440 (721)
-|.--+--||+..+ .++.++.+.|.
T Consensus 420 ~V~~SIivHG~S~~~l~lg~~~~~~~~~~~~~ 451 (810)
T TIGR00844 420 SIVTSVIVHGSSVAVIMLGRYLNTVTLTATPT 451 (810)
T ss_pred HHHHHHhhccccchHHHhccccCceEEEEeee
Confidence 33344445676643 34555555554
No 81
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=30.70 E-value=3e+02 Score=30.21 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=86.6
Q ss_pred Hhhhhhhee-ecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEE
Q 004974 262 NFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 340 (721)
Q Consensus 262 N~iaGi~I~-~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I 340 (721)
++=.|++|- +..|+-.|=+|.+ ....|.-..|++.. ..+..+.|+.++-.. =.......|.|.+.--+.+.=
T Consensus 82 DlPkgYQITQ~~~Pi~~~G~i~i----~~~~~~~k~I~I~~-ihlEEDagK~~h~~~--~~~~s~vD~NRaG~PLiEIVT 154 (289)
T PF02934_consen 82 DLPKGYQITQYDNPIAENGYIEI----EFEDGREKRIRIER-IHLEEDAGKSIHDGG--GEDYSLVDYNRAGVPLIEIVT 154 (289)
T ss_dssp TBTTSEEEEESSS-SEEEEEEEE----TECTSSTEEEEEEE-EEEEE---EEEEETT---TTEEEEETTSTT-EEEEEEE
T ss_pred ccCcCccccCCccceecCCEEEE----EecCCceEEEEEEE-EEehhhhhhhccccc--cceeeEEcccCCCccceEEee
Confidence 345677774 7779999999998 32234457889988 999999999998865 112235668887766666665
Q ss_pred EeccCCHHHHHHHHHHHHHHHHcCCCcccccc--ccEE----EEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHH
Q 004974 341 AISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRV----FLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAIL 414 (721)
Q Consensus 341 ~I~ytD~ekv~~i~~~l~e~L~~~p~v~~~~~--~P~V----~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~ 414 (721)
.=++.+.+.+.+.++.|+.+|+...-...... .-++ -+...+... +.-++-++.- ..+..++..+.
T Consensus 155 ePd~~s~~EA~~~~~~L~~il~~lgvs~~~me~GslR~DvNVSv~~~g~~~------~g~rvEIKNl--nS~~~i~~AI~ 226 (289)
T PF02934_consen 155 EPDIRSPEEAAAFLKKLRRILRYLGVSDGNMEEGSLRCDVNVSVRPKGEEK------FGTRVEIKNL--NSFRFIEKAIE 226 (289)
T ss_dssp -TTB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTSEEEEEEEEECETTSSS------TS-EEEEEEE---SHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcccCccccCcEEeeceeeecCCCCCC------CcceEEEecc--cCHHHHHHHHH
Confidence 66668899999999999888876543332210 1111 122222211 1223444433 34567778888
Q ss_pred HHHHHHHH--HCCCcc
Q 004974 415 LDLLRVIS--HHRARL 428 (721)
Q Consensus 415 ~~Il~~~~--e~GIei 428 (721)
.++.+..+ ++|-++
T Consensus 227 ~Ei~RQ~~~l~~g~~v 242 (289)
T PF02934_consen 227 YEIERQIELLENGGEV 242 (289)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCCe
Confidence 77777654 345444
No 82
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=30.63 E-value=1.1e+03 Score=28.87 Aligned_cols=8 Identities=25% Similarity=0.090 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 004974 241 WLTAGGLG 248 (721)
Q Consensus 241 LLaslGi~ 248 (721)
...+.|++
T Consensus 525 ~~~~~g~~ 532 (660)
T COG1269 525 MFGAFGIL 532 (660)
T ss_pred HhhhccHH
Confidence 33444444
No 83
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=30.38 E-value=5.2e+02 Score=31.56 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------Cc----------hHHHHHHHHH------HHHHHHHHhhhHHHHhhhhhh
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLG------FS----------TQKWLTAGGL------GTVLLTLAGREIFTNFLSSAM 268 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lG------v~----------itsLLaslGi------~gvalgLAaqdiL~N~iaGi~ 268 (721)
-.++.++..+++....++.+++.+| ++ ++.++..+|+ .+++.||++|+.+-..++-++
T Consensus 498 k~Fl~kAgtiI~~~svlIW~Ls~~pp~g~~~~~~S~l~~ig~~l~Plf~plG~~~Wqa~v~Li~G~~AKEvvv~tl~~ly 577 (653)
T COG0370 498 KEFLKKAGTIILAGSVLIWFLSSFPPGGVDNIKDSILAVIGKALEPLFSPLGFGDWQATVALIFGFIAKEVVVGTLGVLY 577 (653)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCcccCchhhhHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777788888876 11 3345555665 367778999998776666543
No 84
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=30.28 E-value=17 Score=32.14 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred CccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEE
Q 004974 274 PFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 315 (721)
Q Consensus 274 PFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~I 315 (721)
-.++||+|.+ .+|..|+|.+++=-+ ..++..+|..+.+
T Consensus 36 ~Lk~Gd~VvT---~gGi~G~V~~i~~~~-v~lei~~g~~i~v 73 (82)
T PF02699_consen 36 SLKPGDEVVT---IGGIYGTVVEIDDDT-VVLEIAPGVEITV 73 (82)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCEEEE---CCcEEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 4789999988 578999999998776 7888777765544
No 85
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=30.19 E-value=28 Score=28.81 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.8
Q ss_pred cCCccCCcEEEE
Q 004974 272 TRPFVLNEWIQT 283 (721)
Q Consensus 272 ~rPFrVGD~I~I 283 (721)
..||+.||+|++
T Consensus 3 ~Gpf~~GdrVQl 14 (54)
T PF14801_consen 3 RGPFRAGDRVQL 14 (54)
T ss_dssp --S--TT-EEEE
T ss_pred cCCCCCCCEEEE
Confidence 359999999999
No 86
>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase. In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.
Probab=30.09 E-value=59 Score=28.24 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred eeecC--CccCCcEEEEeec-CCCeEEEEEEEece
Q 004974 269 IHATR--PFVLNEWIQTKIE-GYEVSGTVEHVGWW 300 (721)
Q Consensus 269 I~~~r--PFrVGD~I~I~i~-g~~v~G~VeeIgL~ 300 (721)
+..+. +.++||+|.+..+ +..+-|.|++|...
T Consensus 15 f~~~~~~~v~~GeyV~i~~~~~~~vlG~V~~i~~~ 49 (91)
T PF09378_consen 15 FIVEPSKDVRVGEYVVIEYDDGEKVLGMVTSISRG 49 (91)
T ss_dssp EEEEE-TT-BTTEEEEES----TTEEEEEEEEES-
T ss_pred EEEeCCCCCCcCeEEEEEEechhhhhhhhheeEEc
Confidence 44444 8999999999655 67899999988873
No 87
>PHA00094 VI minor coat protein
Probab=30.05 E-value=4.9e+02 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=16.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHH
Q 004974 155 VVLPTEAGEVVKQRLLNFVRSLSTVL 180 (721)
Q Consensus 155 l~lp~~~~~~v~~~l~~~l~slliil 180 (721)
..+|..+.+.+...++.-....+.++
T Consensus 63 ~vlP~d~~~~~~mvlPsNa~pCv~aI 88 (112)
T PHA00094 63 SILPPDFVDAVSMVVPSNAIPCVYAI 88 (112)
T ss_pred hhCChHHHHHHHHhcCCCchhHHHHH
Confidence 45787777777766665555444333
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=30.03 E-value=1.2e+03 Score=29.27 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=8.1
Q ss_pred ccccccccccccccc
Q 004974 6 SLQLSHDLGLCRNQV 20 (721)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (721)
+.|.|.+-.++.+..
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (832)
T PLN03159 2 TSQMSTGKNPSTASS 16 (832)
T ss_pred CCCcCCCCCCCCCCC
Confidence 346666665554443
No 89
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=29.81 E-value=89 Score=26.22 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=21.3
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEE
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 305 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~I 305 (721)
-.+||+|+++ .+..|+|+.+.=.| +.+
T Consensus 4 a~vGdiIefk---~g~~G~V~kv~eNS-VIV 30 (57)
T PF09953_consen 4 AKVGDIIEFK---DGFTGIVEKVYENS-VIV 30 (57)
T ss_pred cccCcEEEEc---CCcEEEEEEEecCc-EEE
Confidence 3689999983 56899999998776 544
No 90
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=29.70 E-value=7.6e+02 Score=26.83 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc
Q 004974 213 FAGKAVYSAVWVASASLFMELLGFS 237 (721)
Q Consensus 213 ~i~~ii~ivI~iIaiiiiL~~lGv~ 237 (721)
.+++++...+..+..++.|..+|.+
T Consensus 227 ~~~~~l~TslTTl~~~l~L~~~g~~ 251 (289)
T PRK13022 227 TLSRTIITSLTTLLVVLALYLFGGG 251 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3444455555444445555555543
No 91
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=29.64 E-value=1.1e+02 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.1
Q ss_pred heeecCCccCCcEEEE
Q 004974 268 MIHATRPFVLNEWIQT 283 (721)
Q Consensus 268 ~I~~~rPFrVGD~I~I 283 (721)
-+-|.+|..+||.|.+
T Consensus 82 ~~rf~~PV~~GDtl~~ 97 (142)
T cd03452 82 NLRFLEPVYPGDTIQV 97 (142)
T ss_pred eEEECCCCCCCCEEEE
Confidence 4679999999999986
No 92
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=1.4e+02 Score=31.40 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHhhhHHHHhhhhhheeecCCccCCc
Q 004974 209 MGFQFAGKAVYSAVWVASASLFMELLGFS-TQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNE 279 (721)
Q Consensus 209 ~~i~~i~~ii~ivI~iIaiiiiL~~lGv~-itsLLaslGi~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD 279 (721)
.+..+....+-.++|+++++.+-++|-++ ........|.+=.+|.|.+-.++.=.+.. .+.-+-|++|-
T Consensus 105 Vl~Dl~~SalwtflwfvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~A--~lA~qR~~~g~ 174 (233)
T KOG4016|consen 105 VLADLGVSALWAFLWFVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQA--VLAFQRYRIGA 174 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 34677788889999999999999999766 33455556666677777776666543332 34555677765
No 93
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=28.23 E-value=3.4e+02 Score=27.94 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 004974 226 SASLFMELLGFSTQKWLTAGGLGTVLLTL 254 (721)
Q Consensus 226 aiiiiL~~lGv~itsLLaslGi~gvalgL 254 (721)
..-.+|..||++..++-.++|++-+.+|+
T Consensus 57 ~G~~iL~~fgIsl~af~IaGGiiL~~ia~ 85 (203)
T PF01914_consen 57 FGQLILNFFGISLPAFRIAGGIILFLIAL 85 (203)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33456778999999999998887666655
No 94
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=27.97 E-value=1.1e+03 Score=28.36 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.4
Q ss_pred ccchhhhee
Q 004974 651 ALEENIVLG 659 (721)
Q Consensus 651 ~~~~~~~~~ 659 (721)
.++|||.+|
T Consensus 568 Ti~eNi~l~ 576 (710)
T TIGR03796 568 TVRDNLTLW 576 (710)
T ss_pred cHHHHhhCC
Confidence 445555443
No 95
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=27.83 E-value=6e+02 Score=27.46 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=9.6
Q ss_pred HhCCchHHHHHHHHHHHHH
Q 004974 233 LLGFSTQKWLTAGGLGTVL 251 (721)
Q Consensus 233 ~lGv~itsLLaslGi~gva 251 (721)
..|++...++...-+++++
T Consensus 86 a~GiS~~~l~~p~i~~~l~ 104 (354)
T PF03739_consen 86 ASGISLKRLLRPIIIFALL 104 (354)
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 3477766555444333333
No 96
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.54 E-value=9.5e+02 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004974 169 LLNFVRSLSTVLAFAYCLSSLI 190 (721)
Q Consensus 169 l~~~l~slliil~~~~~l~rli 190 (721)
+..++-+++-+++++++++.++
T Consensus 143 ~vEllKsllKi~~v~~v~~~~l 164 (363)
T COG1377 143 LVELLKSLLKIVLVGLVAYFVL 164 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444444443
No 97
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=27.34 E-value=3.5e+02 Score=29.20 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.2
Q ss_pred HhCCchHHHHHHHHHHHHHHHHH
Q 004974 233 LLGFSTQKWLTAGGLGTVLLTLA 255 (721)
Q Consensus 233 ~lGv~itsLLaslGi~gvalgLA 255 (721)
.+|+...+++.+++++.+++++.
T Consensus 81 ~~~i~~~~i~~~l~~~t~~~~~~ 103 (287)
T PF07760_consen 81 PWGIRLIPILISLSIFTLVLSII 103 (287)
T ss_pred cCCcchhHHHHHHHHHHHHHHHH
Confidence 47899888888888777766543
No 98
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=27.15 E-value=6.1e+02 Score=24.91 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004974 213 FAGKAVYSAVWVASASLF 230 (721)
Q Consensus 213 ~i~~ii~ivI~iIaiiii 230 (721)
.+.++..++++++++.++
T Consensus 171 ~i~~~~g~~li~~av~l~ 188 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666655544
No 99
>PRK10739 putative antibiotic transporter; Provisional
Probab=27.03 E-value=4.1e+02 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 004974 222 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 255 (721)
Q Consensus 222 I~iIaiiiiL~~lGv~itsLLaslGi~gvalgLA 255 (721)
++.+..-.+|..||+++.++-.++|++-+.+|+-
T Consensus 53 ~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ 86 (197)
T PRK10739 53 VFLFAGEKILAFLNLRTETVSISGGIILFLIAIK 86 (197)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3344445677889999999999988877666653
No 100
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=26.88 E-value=1.1e+03 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=23.3
Q ss_pred chhhHHHhhcCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 73 NRIRSYNALQCSPQA-----LKLVPGIAIIVFATWGLGPLMRQSRNLLL 116 (721)
Q Consensus 73 ~~~~l~~~l~~~pl~-----~~llial~ill~a~~~l~~llr~l~r~l~ 116 (721)
+.+..|..+.+...+ ...+.+..++.+-..+.+|.++.+...+.
T Consensus 72 ~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t 120 (439)
T COG0733 72 NAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLT 120 (439)
T ss_pred ChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666542221 33445555555555566777775554443
No 101
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=26.64 E-value=3.5e+02 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 004974 222 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 255 (721)
Q Consensus 222 I~iIaiiiiL~~lGv~itsLLaslGi~gvalgLA 255 (721)
++.+..-.+|..||++..++-.++|++-+.+|+-
T Consensus 56 ~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ 89 (201)
T TIGR00427 56 IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMD 89 (201)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3334444677889999999999988877766654
No 102
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=26.59 E-value=2.6e+02 Score=33.04 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Q 004974 223 WVASASLFMELLGFSTQKWLTAGGLGTVLLTLAG 256 (721)
Q Consensus 223 ~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAa 256 (721)
.++.++.+|+.+| +-|+..|++|++++++.
T Consensus 378 n~~lil~vls~lg----atLtLpgIAGiILtIGm 407 (506)
T COG0342 378 NGVLILAVLSLLG----ATLTLPGIAGIILTIGM 407 (506)
T ss_pred HHHHHHHHHHHhc----ccccchhhhHHHHhhhh
Confidence 3444444555554 44556677777766543
No 103
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=26.59 E-value=7.4e+02 Score=29.22 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=86.4
Q ss_pred hhhhee-ecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEec
Q 004974 265 SSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 343 (721)
Q Consensus 265 aGi~I~-~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~ 343 (721)
-|.+|. ++.|+-.+=+|.|..+ .|.-..|++.- .+++.+.|..++.=. .....+.|.|.+..-+.+.=.=+
T Consensus 92 kgyQIsQ~d~Pi~~~G~i~i~~~----~~~~k~i~I~r-~HlEEDaGK~~h~~~---~~~s~vD~NRaGvPLiEIVtePd 163 (483)
T COG0064 92 KGYQISQFDKPIAENGYLEIELE----DGEEKRIGIER-IHLEEDAGKLTHEGS---AGYSLVDYNRAGVPLIEIVTEPD 163 (483)
T ss_pred CCccccccccccccCcEEEEecC----CCceeeeccce-eeccccCCcccccCC---CCceeeeccccCCceeeeecccC
Confidence 467764 8889999999998322 27788899998 999999998887764 22234445554444333322223
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCccccc--cccEEEEE-eeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHH
Q 004974 344 HLDVHKINSIVADMRKVLAKNPQVEQQR--LHRRVFLD-NINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRV 420 (721)
Q Consensus 344 ytD~ekv~~i~~~l~e~L~~~p~v~~~~--~~P~V~v~-~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~ 420 (721)
..+++.++..++.++.+++-..--+.+. -.-+|-+. .+.+.+ +-. +--+|-++.- ..+..++..+..++.+.
T Consensus 164 irs~~eA~ayl~~Lr~ilrylgisd~~meeGsmR~DaNvSvr~~g-~~~--~GtrvEiKNi--NS~~~v~kAi~yE~~RQ 238 (483)
T COG0064 164 IRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKG-QEE--FGTRVEIKNL--NSFRNVEKAIEYEIQRQ 238 (483)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCcccCceEeeeeeeecccc-ccc--cCceeeeecC--ccHHHHHHHHHHHHHHH
Confidence 4688999999998888876433222111 01111110 011100 000 2234445543 45677888888888887
Q ss_pred HHH
Q 004974 421 ISH 423 (721)
Q Consensus 421 ~~e 423 (721)
.+.
T Consensus 239 ~~~ 241 (483)
T COG0064 239 IEL 241 (483)
T ss_pred HHH
Confidence 765
No 104
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=26.55 E-value=5e+02 Score=25.43 Aligned_cols=79 Identities=18% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHH----HHHHHHHHHhCCchHHHHH-------HHHHHHH
Q 004974 182 FAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWV----ASASLFMELLGFSTQKWLT-------AGGLGTV 250 (721)
Q Consensus 182 ~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~i----IaiiiiL~~lGv~itsLLa-------slGi~gv 250 (721)
+.|+-.+++..+.+.|....... ....++..+...++.. ++.-.+...++.+....+. ++|.+..
T Consensus 50 ~~~iq~~Mi~~i~~iYG~~~~~~----~~~~l~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~g~~~qa~~a~~~T~ 125 (162)
T PF05128_consen 50 LLAIQAKMIREIAKIYGLRPSQA----GAKELISSLGSGLAGQGAVELGASLVGKLLKSSLAGTVSGAAIQAASAGALTY 125 (162)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665443321 1223444444333322 2222334455654333322 2334455
Q ss_pred HHHHHhhhHHHHhh
Q 004974 251 LLTLAGREIFTNFL 264 (721)
Q Consensus 251 algLAaqdiL~N~i 264 (721)
++|.++...+.+.-
T Consensus 126 ~iG~~~~~~~~~~~ 139 (162)
T PF05128_consen 126 AIGKAAIEYFENGP 139 (162)
T ss_pred HHHHHHHHHHHhcc
Confidence 56666666666543
No 105
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=26.39 E-value=1.2e+03 Score=27.98 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004974 182 FAYCLSSLI 190 (721)
Q Consensus 182 ~~~~l~rli 190 (721)
+.|....++
T Consensus 107 l~~~~~~ll 115 (533)
T COG1283 107 LSWLSPPLL 115 (533)
T ss_pred hhHHHHHHH
Confidence 344444333
No 106
>PRK10845 colicin V production protein; Provisional
Probab=26.28 E-value=6.5e+02 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004974 173 VRSLSTVLAFAYCLSSLIQQAQKFFM 198 (721)
Q Consensus 173 l~slliil~~~~~l~rli~~i~~~~~ 198 (721)
+.+++.+++..|++.++-+.+..++.
T Consensus 28 v~sl~g~i~a~~~A~~~~~~la~~l~ 53 (162)
T PRK10845 28 ALSLVTWGCAFFVASHYYTYLSVWFT 53 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555665665555555443
No 107
>PRK11715 inner membrane protein; Provisional
Probab=26.25 E-value=1.1e+03 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=13.4
Q ss_pred HhCCchHHHHHHHHHHHHHHHH
Q 004974 233 LLGFSTQKWLTAGGLGTVLLTL 254 (721)
Q Consensus 233 ~lGv~itsLLaslGi~gvalgL 254 (721)
++...-.+||.+..++-+++++
T Consensus 403 lLq~EDyALL~GSllLF~~La~ 424 (436)
T PRK11715 403 LLQSEDYALLLGSLLLFAVLAL 424 (436)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4555666777776666555543
No 108
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=26.23 E-value=9.1e+02 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 004974 207 RNMGFQFAGKAVYSAVWVASASLF 230 (721)
Q Consensus 207 r~~~i~~i~~ii~ivI~iIaiiii 230 (721)
|-..+.++..++..+.++++.+++
T Consensus 156 r~a~LHvl~D~Lgsv~vIia~i~i 179 (296)
T COG1230 156 RGAYLHVLGDALGSVGVIIAAIVI 179 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666555555554443
No 109
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=26.14 E-value=1.1e+03 Score=28.23 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLGFS 237 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lGv~ 237 (721)
...+++++.++++++++.++-.+++-.
T Consensus 360 m~~~k~~~G~~ll~~~~~ll~~~~~~~ 386 (571)
T PRK00293 360 MNQVKTAFGFVLLALPVFLLERVLPGV 386 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446777777777777777666566544
No 110
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=25.29 E-value=1.1e+03 Score=27.04 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.4
Q ss_pred HHHHhC
Q 004974 230 FMELLG 235 (721)
Q Consensus 230 iL~~lG 235 (721)
.|..+|
T Consensus 362 ~L~~~g 367 (397)
T TIGR01129 362 ILYVFG 367 (397)
T ss_pred HHHHHh
Confidence 333444
No 111
>PRK09108 type III secretion system protein HrcU; Validated
Probab=25.07 E-value=1e+03 Score=26.81 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004974 170 LNFVRSLSTVLAFAYCLSSLIQ 191 (721)
Q Consensus 170 ~~~l~slliil~~~~~l~rli~ 191 (721)
..++.+++=+++++++++.++.
T Consensus 139 ~el~KsllK~~~~~~v~~~~~~ 160 (353)
T PRK09108 139 IELVKMIVKAVVIAAVLWKGIT 160 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 112
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.04 E-value=3.9e+02 Score=31.68 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 004974 130 HVMTSYIQPLMLWTGAILICRALD 153 (721)
Q Consensus 130 ~il~~l~~PL~l~i~~i~i~~al~ 153 (721)
.+.+.+...+.+.+++.+.++.+.
T Consensus 379 ~lYr~F~n~l~~~Vvas~~~i~~~ 402 (518)
T KOG2568|consen 379 SLYRKFTNTLAFSVVASFAFILVE 402 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 113
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.96 E-value=1.8e+03 Score=29.58 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.9
Q ss_pred HhCCchHHHHH
Q 004974 233 LLGFSTQKWLT 243 (721)
Q Consensus 233 ~lGv~itsLLa 243 (721)
++|++...++.
T Consensus 178 lTglSwlsIle 188 (1355)
T PRK10263 178 FTGWSWVTIAE 188 (1355)
T ss_pred HHhhHHHHHHH
Confidence 44555444433
No 114
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=24.21 E-value=2.6e+02 Score=25.82 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=14.0
Q ss_pred heeecCCccCCcEEEE
Q 004974 268 MIHATRPFVLNEWIQT 283 (721)
Q Consensus 268 ~I~~~rPFrVGD~I~I 283 (721)
-+-|.+|..+||.|.+
T Consensus 74 ~~rf~~Pv~~Gdtl~~ 89 (127)
T cd03453 74 GVRFTKPVPVPDTLTC 89 (127)
T ss_pred EEEECCcCcCCCEEEE
Confidence 3678999999999987
No 115
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=24.17 E-value=8.2e+02 Score=25.38 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=26.5
Q ss_pred ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHc-CCCcc
Q 004974 333 HWRIKTHLAISH-LDVHKINSIVADMRKVLAK-NPQVE 368 (721)
Q Consensus 333 ~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~-~p~v~ 368 (721)
...+.+++.++- .+.++..++.+.+++.+++ .|++.
T Consensus 222 ~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~ 259 (268)
T TIGR01297 222 KLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIE 259 (268)
T ss_pred CEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCC
Confidence 455678888887 6888888888888876654 46653
No 116
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.86 E-value=2.3e+02 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=28.7
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEecee-eEEEEe-cCCcE--EEEecccc
Q 004974 273 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWS-PTIVRG-EDREA--VHIPNHKF 320 (721)
Q Consensus 273 rPFrVGD~I~I~i~g--~~v~G~VeeIgL~s-tT~IRt-~Dg~~--V~IPNs~l 320 (721)
..|++||+|+|. +| .+..|.|.+++-.. ..++.- .-... +.||++.+
T Consensus 93 ~~~~~G~~V~I~-~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELI-AGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEe-ccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 469999999992 22 45678999986322 022222 22333 67777765
No 117
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=23.82 E-value=8.3e+02 Score=28.69 Aligned_cols=23 Identities=13% Similarity=-0.141 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHH
Q 004974 129 HHVMTSYIQPLMLWT-GAILICRA 151 (721)
Q Consensus 129 ~~il~~l~~PL~l~i-~~i~i~~a 151 (721)
+.++..+..-...|+ .+++.|.+
T Consensus 173 ~~~l~~ig~a~F~fm~Pil~ayiA 196 (482)
T PRK11404 173 TWVVESIGYLGFTFMIPIMGAYIA 196 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444 44445544
No 118
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=23.81 E-value=2.3e+02 Score=22.34 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=32.4
Q ss_pred CccCCcEEEEee-cCCCeEEEEEEEec-eeeEEEEecC-CcEEEEecccc
Q 004974 274 PFVLNEWIQTKI-EGYEVSGTVEHVGW-WSPTIVRGED-REAVHIPNHKF 320 (721)
Q Consensus 274 PFrVGD~I~I~i-~g~~v~G~VeeIgL-~stT~IRt~D-g~~V~IPNs~l 320 (721)
++++|+.+..+. ++....|+|+++.= .. ..++=.| |....+|-..|
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~-~~V~f~D~G~~~~v~~~~l 50 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQL-YEVFFIDYGNEEVVPPSDL 50 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCE-EEEEEECCCccEEEeHHHe
Confidence 689999999987 77778999999985 22 3444444 76666665443
No 119
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=23.56 E-value=3.9e+02 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhhe
Q 004974 245 GGLGTVLLTLAGREIFTNFLSSAMI 269 (721)
Q Consensus 245 lGi~gvalgLAaqdiL~N~iaGi~I 269 (721)
+.+.++++++-.++++-.++.|+..
T Consensus 70 a~~~~~~~~~~~~~~~~~v~~G~~~ 94 (99)
T PF05437_consen 70 AALVAALVALRTRNLLLSVLAGVAA 94 (99)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHH
Confidence 4445666778888888888888754
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.51 E-value=2.1e+02 Score=28.53 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=10.8
Q ss_pred HHHHHhCCchH-HHHHHHHHHHHHHHH
Q 004974 229 LFMELLGFSTQ-KWLTAGGLGTVLLTL 254 (721)
Q Consensus 229 iiL~~lGv~it-sLLaslGi~gvalgL 254 (721)
+++..++.+.. .+.+++|++.+|+|+
T Consensus 24 ~~Lv~~~~~l~~~~s~~lg~~~lAlg~ 50 (191)
T PF04156_consen 24 AALVLFISGLGALISFILGIALLALGV 50 (191)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444444332 223344555555543
No 121
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.17 E-value=4.7e+02 Score=30.74 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=5.5
Q ss_pred hhhHHHHhhhhh
Q 004974 256 GREIFTNFLSSA 267 (721)
Q Consensus 256 aqdiL~N~iaGi 267 (721)
+=.+--.++||+
T Consensus 378 ~v~~PL~~lG~~ 389 (521)
T PF02990_consen 378 FVSIPLTFLGGY 389 (521)
T ss_pred HHhhhhhhcchh
Confidence 333444455554
No 122
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=23.10 E-value=8e+02 Score=24.87 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhCCchH
Q 004974 224 VASASLFMELLGFSTQ 239 (721)
Q Consensus 224 iIaiiiiL~~lGv~it 239 (721)
++..+.++..+|++..
T Consensus 84 i~~t~g~m~l~G~~ln 99 (192)
T TIGR00916 84 VILILGVLSLFGATLT 99 (192)
T ss_pred HHHHHHHHHHHCCccc
Confidence 3344455566676654
No 123
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=22.70 E-value=5.7e+02 Score=30.67 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-------C------chHHHHHHHHH-------HHHHHHHHhhhHHHHhhhhhh
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLG-------F------STQKWLTAGGL-------GTVLLTLAGREIFTNFLSSAM 268 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lG-------v------~itsLLaslGi-------~gvalgLAaqdiL~N~iaGi~ 268 (721)
-.++.++..+++.+..++.+|..+| + -+.+++..+|+ .+++.||.+|+++-..++.++
T Consensus 473 ~~fl~~A~~ii~~~siviw~l~~~~~~~~~~S~l~~~g~~~~P~~~p~g~~~~w~~~~ali~g~~aKE~vv~~l~~~y 550 (591)
T TIGR00437 473 RSFIKKAGTIIVIGSVLIWFLSSFPGGKILESWLAAIGSIMAPLFVPLGKILDWFASVALIFGFVAKEVVVATLGVLY 550 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776 1 13344545554 467779999999888877654
No 124
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=2.5e+02 Score=25.36 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 004974 223 WVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 266 (721)
Q Consensus 223 ~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaG 266 (721)
.+++++..|-.+-...-..++..|++|+.+|--.-..+..+++|
T Consensus 12 llVGiiyaLl~vrsPAPP~iAlvGllGilvGeq~~p~~~~ll~g 55 (93)
T COG4317 12 LLVGIIYALLKVRSPAPPAIALVGLLGILVGEQIVPWAKRLLGG 55 (93)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555666666888899999999998888888888877
No 125
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.61 E-value=1.2e+03 Score=26.68 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=5.4
Q ss_pred HHHHHHHcCC
Q 004974 356 DMRKVLAKNP 365 (721)
Q Consensus 356 ~l~e~L~~~p 365 (721)
.|++.+++|.
T Consensus 300 ~Ir~~A~e~~ 309 (386)
T PRK12468 300 RIRELGAEHR 309 (386)
T ss_pred HHHHHHHHcC
Confidence 5555555543
No 126
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.35 E-value=2e+03 Score=29.31 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcc
Q 004974 346 DVHKINSIVADMRKVLAKNPQVE 368 (721)
Q Consensus 346 D~ekv~~i~~~l~e~L~~~p~v~ 368 (721)
+..+++. .++...-++|+..
T Consensus 1461 ~~~~~~~---~lr~w~ge~~~~~ 1480 (1634)
T PLN03223 1461 PEARVRR---QLRIWKGENPDEE 1480 (1634)
T ss_pred CcHHHHH---HHHHhcCCCCCcc
Confidence 4445554 4444444444433
No 127
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=22.19 E-value=1.4e+03 Score=27.37 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=5.3
Q ss_pred HHhhhHHHHhhhh
Q 004974 254 LAGREIFTNFLSS 266 (721)
Q Consensus 254 LAaqdiL~N~iaG 266 (721)
.++-.++-|.+++
T Consensus 241 ~a~~~ll~~~iG~ 253 (533)
T COG1283 241 VALGNLLFNLIGV 253 (533)
T ss_pred HHHHHHHHHHHhH
Confidence 3333444444443
No 128
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.10 E-value=1.2e+03 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004974 170 LNFVRSLSTVLAFAYCLSSLI 190 (721)
Q Consensus 170 ~~~l~slliil~~~~~l~rli 190 (721)
..++.+++=+++++++++.++
T Consensus 144 ~el~KsllK~~~~~~v~~~~~ 164 (359)
T PRK05702 144 VELLKSLLKVLLVGGVAYFVL 164 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444443434444444444
No 129
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=22.09 E-value=4e+02 Score=24.39 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhH
Q 004974 211 FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREI 259 (721)
Q Consensus 211 i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdi 259 (721)
+-++.++.-+.|+.+.+..++-.+++++..-...+.++|+++..+.+..
T Consensus 39 LlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~~~ 87 (90)
T PF11674_consen 39 LLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVRKF 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666665555555555555554333333333444444444433
No 130
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=22.07 E-value=2e+02 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=18.8
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEe
Q 004974 273 RPFVLNEWIQTKIEG--YEVSGTVEHVG 298 (721)
Q Consensus 273 rPFrVGD~I~I~i~g--~~v~G~VeeIg 298 (721)
..|++||+|+| ++| .|..|.|++++
T Consensus 85 ~~~~~Gd~V~I-~~GPf~G~~g~v~~~d 111 (145)
T TIGR00405 85 ESIKKGDIVEI-ISGPFKGERAKVIRVD 111 (145)
T ss_pred cccCCCCEEEE-eecCCCCCeEEEEEEc
Confidence 35999999999 332 45678888885
No 131
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=22.03 E-value=1.3e+03 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 004974 212 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLT 253 (721)
Q Consensus 212 ~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalg 253 (721)
+.+.|-+...+-.+..+++|-+||-+.-.-++.+=++|+++|
T Consensus 1338 QTLsRTI~TSlTTLLallaLllFGG~sI~~FAlALLIGIIvG 1379 (1403)
T PRK12911 1338 KTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLG 1379 (1403)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 344454555555555555565676543333333333344443
No 132
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=21.95 E-value=1e+03 Score=28.15 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhCC
Q 004974 222 VWVASASLFMELLGF 236 (721)
Q Consensus 222 I~iIaiiiiL~~lGv 236 (721)
+..++.++.|.++|.
T Consensus 439 lTTlia~l~L~~~g~ 453 (498)
T PRK05812 439 ITTLIAAIILYALGT 453 (498)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333333344444443
No 133
>PRK11111 hypothetical protein; Provisional
Probab=21.89 E-value=6e+02 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 004974 222 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 255 (721)
Q Consensus 222 I~iIaiiiiL~~lGv~itsLLaslGi~gvalgLA 255 (721)
++++..-.+|..||++..++-.++|++-+.+|+-
T Consensus 59 ~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ 92 (214)
T PRK11111 59 ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMS 92 (214)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3344445677889999999999988887777654
No 134
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.88 E-value=1.2e+03 Score=26.31 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHCCCc
Q 004974 413 ILLDLLRVISHHRAR 427 (721)
Q Consensus 413 L~~~Il~~~~e~GIe 427 (721)
+-++|.+..++|||.
T Consensus 290 ~A~~I~~~A~~~~vP 304 (347)
T TIGR00328 290 LALKIKEIARENNVP 304 (347)
T ss_pred HHHHHHHHHHHcCCC
Confidence 333445555555544
No 135
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.82 E-value=1.2e+03 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCChh
Q 004974 130 HVMTSYIQPLMLWTGAILICRALDPVVLPTE 160 (721)
Q Consensus 130 ~il~~l~~PL~l~i~~i~i~~al~~l~lp~~ 160 (721)
++..++.-|+.++++++++...+..+++|..
T Consensus 158 Ki~~Al~YP~vll~v~~~v~~~Ll~~VvP~f 188 (397)
T COG1459 158 KIKSALIYPLVLLVVALVVVLFLLIFVVPQF 188 (397)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccH
Confidence 6778888999888888888877777777743
No 136
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=21.81 E-value=1.4e+03 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCcc
Q 004974 416 DLLRVISHHRARL 428 (721)
Q Consensus 416 ~Il~~~~e~GIei 428 (721)
.+.+.++++|++.
T Consensus 307 ~l~d~l~~aG~~t 319 (545)
T PRK11598 307 GLLDIIQRAGINV 319 (545)
T ss_pred cHHHHHHHcCCeE
Confidence 4555555555543
No 137
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=21.78 E-value=1e+03 Score=26.29 Aligned_cols=10 Identities=0% Similarity=0.082 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 004974 130 HVMTSYIQPL 139 (721)
Q Consensus 130 ~il~~l~~PL 139 (721)
++++.+..+.
T Consensus 6 Yi~re~l~~~ 15 (366)
T PRK15120 6 YLVRETLKSQ 15 (366)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 138
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=21.75 E-value=1.7e+03 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=8.9
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHH
Q 004974 231 MELLGFSTQKWLTAGGLGTVLLTL 254 (721)
Q Consensus 231 L~~lGv~itsLLaslGi~gvalgL 254 (721)
|...++..-.-+..+.++|+++++
T Consensus 295 l~~~~~~~~~~~Gi~~a~gvl~a~ 318 (910)
T TIGR00833 295 LSLARLPSFKTLGVSCAVGVLVAL 318 (910)
T ss_pred HHHccChHHHHHHHHHHHHHHHHH
Confidence 333444333223333333444443
No 139
>COG4280 Predicted membrane protein [Function unknown]
Probab=21.63 E-value=9.7e+02 Score=25.30 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHhhhHHH-------HhhhhhheeecCCccCCcEEEEeec
Q 004974 249 TVLLTLAGREIFT-------NFLSSAMIHATRPFVLNEWIQTKIE 286 (721)
Q Consensus 249 gvalgLAaqdiL~-------N~iaGi~I~~~rPFrVGD~I~I~i~ 286 (721)
.++++++++.-+. .|.+|+++..-.-|=.|+-|-+.++
T Consensus 161 vlvl~~~lh~plarvpe~~lKfvag~lL~sfGtfWlgegvg~dwP 205 (236)
T COG4280 161 VLVLTAILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGVGFDWP 205 (236)
T ss_pred HHHHHHHhccHHhhCCchhHHHHHHHHHHHhhHHHhccccCCCCC
Confidence 4556777766554 5789999988888888887755333
No 140
>PRK10694 acyl-CoA esterase; Provisional
Probab=21.61 E-value=1.4e+02 Score=28.67 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=23.7
Q ss_pred heeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEE
Q 004974 268 MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 305 (721)
Q Consensus 268 ~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~I 305 (721)
-+-|.+|.++||+|++ .++|+.+|=.+ ..+
T Consensus 61 ~i~F~~Pv~~Gd~l~~-------~a~V~~~g~sS-~~v 90 (133)
T PRK10694 61 GMTFLRPVAVGDVVCC-------YARCVKTGTTS-ISI 90 (133)
T ss_pred ceEECCCcccCcEEEE-------EEEEEEccCce-EEE
Confidence 3678999999999986 47888888776 544
No 141
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.48 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=33% Similarity=0.291 Sum_probs=22.2
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEeceeeEEE
Q 004974 275 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 305 (721)
Q Consensus 275 FrVGD~I~I~i~g~~v~G~VeeIgL~stT~I 305 (721)
-.+||.|+++ ++..|.||+++=-+ +.+
T Consensus 24 a~vgniief~---dgl~g~vek~nens-viv 50 (81)
T COG4873 24 AKVGNIIEFK---DGLTGVVEKVNENS-VIV 50 (81)
T ss_pred eeccceEEEc---ccceeeeeeecCCc-EEE
Confidence 5799999993 77999999999877 443
No 142
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.41 E-value=9.3e+02 Score=30.69 Aligned_cols=144 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHH
Q 004974 93 GIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNF 172 (721)
Q Consensus 93 al~ill~a~~~l~~llr~l~r~l~~rt~~~~~~s~~~~il~~l~~PL~l~i~~i~i~~al~~l~lp~~~~~~v~~~l~~~ 172 (721)
++..++++++++..+++ .|+. .++-.+.-|+.++..+++++. +.++- |.
T Consensus 337 ~~~g~~lv~~vl~lfl~------------~~r~----~liv~~~IPisi~~t~~~m~~----~g~sl-----------N~ 385 (1021)
T PF00873_consen 337 LLIGIILVVLVLLLFLR------------NWRS----ALIVALSIPISILGTFIFMYL----FGISL-----------NI 385 (1021)
T ss_dssp HHHHHHHHHHHHHHHHT------------SHHH----HHHHHHHHHHHHHHHHHHHHH----TTTTB-----------EH
T ss_pred HHHHhHhhhhhhhhhhc------------chHH----HHHHHHHHHHHHHHHHHHHHH----cCCCc-----------hH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 004974 173 VRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLL 252 (721)
Q Consensus 173 l~slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gval 252 (721)
+....++++++.++=..+-.++..+.++......+.....--.+=+...++...+..+..++ +++..-|..|-.+
T Consensus 386 ~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~-----Pl~f~~G~~g~~~ 460 (1021)
T PF00873_consen 386 MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFL-----PLLFMPGIAGQFF 460 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----GGGGSBHHHHHHH
T ss_pred HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhcCCchHHHH
Q ss_pred HHHhhhHHHHhhhhhheeec
Q 004974 253 TLAGREIFTNFLSSAMIHAT 272 (721)
Q Consensus 253 gLAaqdiL~N~iaGi~I~~~ 272 (721)
.-.+-.++-.++++++..+.
T Consensus 461 ~~l~~~v~~al~~Sllval~ 480 (1021)
T PF00873_consen 461 RPLALTVIIALIASLLVALT 480 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 143
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=21.40 E-value=2.5e+02 Score=25.73 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=26.9
Q ss_pred hhhheeecCCccCCcEEEEeecCCCeEEEEEEEec-----eeeEEEEecCCcEE
Q 004974 265 SSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGW-----WSPTIVRGEDREAV 313 (721)
Q Consensus 265 aGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL-----~stT~IRt~Dg~~V 313 (721)
.++-+-+.+|..+||.+.+ .++|.+..- .. +.+++.+|+.+
T Consensus 70 ~~~~~rf~~pv~~Gdtl~~-------~~~v~~~~~~~~v~~~-~~~~nq~G~~v 115 (123)
T cd03455 70 KSFAFRLGAPLYAGDTLRF-------GGRVTAKRDDEVVTVE-LWARNSEGDHV 115 (123)
T ss_pred EEEEEEeeccccCCCEEEE-------EEEEEeeccCcEEEEE-EEEEcCCCCEE
Confidence 3455789999999999987 245554421 22 45666777654
No 144
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=21.38 E-value=2.3e+02 Score=26.47 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=14.3
Q ss_pred heeecCCccCCcEEEE
Q 004974 268 MIHATRPFVLNEWIQT 283 (721)
Q Consensus 268 ~I~~~rPFrVGD~I~I 283 (721)
-+-|.+|+.+||.|.+
T Consensus 82 ~~~f~~pv~~Gd~l~~ 97 (140)
T cd03454 82 ELRWPRPVRPGDTLSV 97 (140)
T ss_pred eeEeCCCCCCCCEEEE
Confidence 4689999999999987
No 145
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=21.34 E-value=2.9e+02 Score=27.74 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 004974 216 KAVYSAVWVASASL 229 (721)
Q Consensus 216 ~ii~ivI~iIaiii 229 (721)
+...++++++.+++
T Consensus 73 ~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 73 KLWSYFLFLIPLLI 86 (182)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444433
No 146
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=21.13 E-value=1.5e+02 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=16.4
Q ss_pred CCcEEEEeecC--CCeEEEEEEEece
Q 004974 277 LNEWIQTKIEG--YEVSGTVEHVGWW 300 (721)
Q Consensus 277 VGD~I~I~i~g--~~v~G~VeeIgL~ 300 (721)
+||+|.| +.| .+..|.|.+|.--
T Consensus 1 ~Gd~V~V-~~G~~~G~~G~I~~i~~~ 25 (32)
T PF00467_consen 1 VGDTVKV-ISGPFKGKIGKIVEIDRS 25 (32)
T ss_dssp TTSEEEE-SSSTTTTEEEEEEEEETT
T ss_pred CCCEEEE-eEcCCCCceEEEEEEECC
Confidence 5999998 322 4578899888653
No 147
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=21.05 E-value=9.8e+02 Score=26.66 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HH-HhCCc
Q 004974 213 FAGKAVYSAVWVASASLF---ME-LLGFS 237 (721)
Q Consensus 213 ~i~~ii~ivI~iIaiiii---L~-~lGv~ 237 (721)
++.|+..++++++.++.+ ++ .+|++
T Consensus 190 lV~RisaVli~VI~ii~~~sv~~~klGl~ 218 (313)
T PF14402_consen 190 LVPRISAVLIVVILIIAAFSVLSYKLGLE 218 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 344444444444444333 33 34555
No 148
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=20.84 E-value=5.7e+02 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHH
Q 004974 216 KAVYSAVWVASASLFMELLGFSTQKWL 242 (721)
Q Consensus 216 ~ii~ivI~iIaiiiiL~~lGv~itsLL 242 (721)
-++.+.+.++.++.+|..||+++..+-
T Consensus 1079 v~l~I~~i~~~~~g~M~~~gisLN~vS 1105 (1204)
T TIGR00917 1079 VVISVGMIVVNLVGIMHLWNISLNAVS 1105 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHHH
Confidence 345666667777788889999876553
No 149
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.5e+03 Score=27.24 Aligned_cols=13 Identities=0% Similarity=0.112 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCc
Q 004974 415 LDLLRVISHHRAR 427 (721)
Q Consensus 415 ~~Il~~~~e~GIe 427 (721)
+.|.++++++|..
T Consensus 425 e~i~~al~~a~l~ 437 (559)
T COG4988 425 EEIIAALDQAGLL 437 (559)
T ss_pred HHHHHHHHHhcHH
Confidence 4555666666554
No 150
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=20.72 E-value=1.5e+03 Score=27.54 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhC
Q 004974 222 VWVASASLFMELLG 235 (721)
Q Consensus 222 I~iIaiiiiL~~lG 235 (721)
+..+++++.|..+|
T Consensus 547 lTTlia~lpL~~~G 560 (604)
T PRK12933 547 FTTMITAVVLYSIG 560 (604)
T ss_pred HHHHHHHHHHHHHc
Confidence 33333334444444
No 151
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.67 E-value=2.2e+02 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004974 89 KLVPGIAIIVFATWGLGPLMRQSRNLLLRKS 119 (721)
Q Consensus 89 ~llial~ill~a~~~l~~llr~l~r~l~~rt 119 (721)
+++.++.++++..| +.++++.+.++++++.
T Consensus 17 ~iv~AilIl~vG~~-va~~v~~~~~~~l~~~ 46 (53)
T PF05552_consen 17 NIVGAILILIVGWW-VAKFVRKLVRRLLEKR 46 (53)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 55666666665555 5555555555566553
No 152
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=20.58 E-value=3e+02 Score=21.65 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEec
Q 004974 277 LNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 317 (721)
Q Consensus 277 VGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPN 317 (721)
+|-.|.+..+++.+.|+++.|+=.---.+++.+|.+..+.-
T Consensus 2 lG~~V~v~~~~~~~~G~~~gId~~G~L~v~~~~g~~~~i~s 42 (48)
T PF02237_consen 2 LGQEVRVETGDGEIEGIAEGIDDDGALLVRTEDGSIRTISS 42 (48)
T ss_dssp TTSEEEEEETSCEEEEEEEEEETTSEEEEEETTEEEEEESS
T ss_pred CCCEEEEEECCeEEEEEEEEECCCCEEEEEECCCCEEEEEE
Confidence 57888887778888999999988774577788886665543
No 153
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=20.52 E-value=1.5e+03 Score=27.24 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=4.3
Q ss_pred hHHHhhcCC
Q 004974 76 RSYNALQCS 84 (721)
Q Consensus 76 ~l~~~l~~~ 84 (721)
.+|..+...
T Consensus 144 ~~~~~l~~~ 152 (710)
T TIGR03796 144 ALWRRLRGS 152 (710)
T ss_pred HHHHHHHHH
Confidence 444555444
No 154
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.14 E-value=1.8e+03 Score=27.73 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc
Q 004974 216 KAVYSAVWVASASLFMELLGFS 237 (721)
Q Consensus 216 ~ii~ivI~iIaiiiiL~~lGv~ 237 (721)
.++...+..+..++.|..+|..
T Consensus 378 ~Il~s~lTTlia~lpL~~~g~g 399 (758)
T PRK13023 378 TIVDANLTTLIAALVLFLLGSG 399 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHhch
Confidence 3333333333333444444543
No 155
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=20.10 E-value=3.2e+02 Score=24.41 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=15.8
Q ss_pred hhhheeecCCccCCcEEEE
Q 004974 265 SSAMIHATRPFVLNEWIQT 283 (721)
Q Consensus 265 aGi~I~~~rPFrVGD~I~I 283 (721)
+..-+-+.+|..+||.|.+
T Consensus 71 ~~~~~~f~~Pv~~Gd~l~~ 89 (127)
T cd03441 71 GSQSVRFLAPVFPGDTLRV 89 (127)
T ss_pred EEeEEEEeCCcCCCCEEEE
Confidence 3455779999999999987
No 156
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.07 E-value=1.2e+03 Score=29.93 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004974 131 VMTSYIQPLMLWTGAILIC 149 (721)
Q Consensus 131 il~~l~~PL~l~i~~i~i~ 149 (721)
++-.+.-|+.+...+++++
T Consensus 906 lii~~~iPl~~~g~~~~l~ 924 (1051)
T TIGR00914 906 LLVFTGIPFALTGGVFALW 924 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455665544444443
No 157
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=20.03 E-value=2.5e+02 Score=25.84 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHhhhhhheeecCCccCCcEEEE
Q 004974 260 FTNFLSSAMIHATRPFVLNEWIQT 283 (721)
Q Consensus 260 L~N~iaGi~I~~~rPFrVGD~I~I 283 (721)
..-+-++--+-+.+|+++||.|.+
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~ 96 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTA 96 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEE
Confidence 344446666889999999999997
Done!