Query 004974
Match_columns 721
No_of_seqs 297 out of 2159
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 1.4E-42 5E-47 365.3 31.4 248 171-438 30-278 (286)
2 3udc_A Small-conductance mecha 100.0 5.8E-40 2E-44 345.2 36.7 214 209-439 63-278 (285)
3 3udc_A Small-conductance mecha 69.4 1E+02 0.0034 31.6 15.3 30 352-382 251-280 (285)
4 2vv5_A MSCS, small-conductance 66.6 63 0.0022 33.2 13.1 31 335-365 234-265 (286)
5 2e6z_A Transcription elongatio 58.4 11 0.00037 30.1 4.3 46 273-320 6-56 (59)
6 1nz9_A Transcription antitermi 55.4 30 0.001 27.0 6.4 39 273-313 3-46 (58)
7 2do3_A Transcription elongatio 46.1 45 0.0016 27.7 6.2 44 271-315 14-59 (69)
8 3cnr_A Type IV fimbriae assemb 44.7 19 0.00065 32.7 4.1 19 265-283 32-50 (117)
9 4dx5_A Acriflavine resistance 44.3 4.3E+02 0.015 31.8 17.2 12 131-142 899-910 (1057)
10 3h0l_B Aspartyl/glutamyl-tRNA( 36.5 1.8E+02 0.0062 32.5 11.1 152 261-430 86-246 (478)
11 3ip4_B Aspartyl/glutamyl-tRNA( 30.2 2.8E+02 0.0094 31.1 11.2 155 261-434 84-247 (483)
12 3exz_A MAOC-like dehydratase; 30.0 86 0.003 28.7 6.2 16 268-283 85-100 (154)
13 4dx5_A Acriflavine resistance 27.5 8.7E+02 0.03 29.2 16.3 37 332-368 568-607 (1057)
14 3kfu_F Aspartyl/glutamyl-tRNA( 23.6 5.1E+02 0.018 28.8 11.7 146 262-428 85-236 (466)
15 1q6w_A Monoamine oxidase regul 23.0 2.1E+02 0.0072 25.9 7.5 20 264-283 96-115 (161)
16 3rze_A Histamine H1 receptor, 22.0 5.7E+02 0.019 26.1 11.5 18 217-234 127-144 (452)
17 3ne5_A Cation efflux system pr 21.6 5.9E+02 0.02 30.6 13.0 11 132-142 906-916 (1054)
18 2v50_A Multidrug resistance pr 21.6 8.9E+02 0.031 29.1 14.6 6 135-140 902-907 (1052)
19 4a2n_B Isoprenylcysteine carbo 21.3 3E+02 0.01 26.5 8.6 20 238-257 73-92 (194)
20 4b6m_A Tubulin-specific chaper 20.8 89 0.003 26.9 4.0 25 273-299 4-28 (84)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=1.4e-42 Score=365.25 Aligned_cols=248 Identities=18% Similarity=0.255 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 004974 171 NFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTV 250 (721)
Q Consensus 171 ~~l~slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gv 250 (721)
+++.++ ++++++|++.+++..+.+.+..+.. .+.....++.+++++++++++++++|..+|++++++++++|++|+
T Consensus 30 ~i~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~ 105 (286)
T 2vv5_A 30 NIVAAL-AIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL 105 (286)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344433 3455677788888765444443322 234456789999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccc
Q 004974 251 LLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ 330 (721)
Q Consensus 251 algLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr 330 (721)
++|||+|++++|++||++|+++|||++||||++ +++.|+|++|+||+ |++|++||+.++|||+.+.++.|+|||+
T Consensus 106 aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~ 180 (286)
T 2vv5_A 106 VVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSR 180 (286)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSS
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCC
Confidence 999999999999999999999999999999999 78999999999999 9999999999999999999999999999
Q ss_pred CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHH
Q 004974 331 KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCV 409 (721)
Q Consensus 331 ~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~v 409 (721)
.+.+|+.+.++++| +|++++++ .+++++++||.+..++ .|.|++.++++++ +. ++++||++.. +|+.+
T Consensus 181 ~~~~r~~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~~~--i~--~~v~~~~~~~---~~~~~ 249 (286)
T 2vv5_A 181 EPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGASS--IN--FVVRVWSNSG---DLQNV 249 (286)
T ss_dssp SSEEEEEEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECSSS--EE--EEEEEEEETT---THHHH
T ss_pred CCcEEEEEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecCCe--EE--EEEEEEEccc---hHHHH
Confidence 98889999999999 99999988 6778899999998887 7899999999985 44 9999999974 56899
Q ss_pred HHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974 410 KEAILLDLLRVISHHRARLATPIRTVQKI 438 (721)
Q Consensus 410 r~~L~~~Il~~~~e~GIeia~P~~tv~~~ 438 (721)
|++++++|+++|+++||++|||+++++..
T Consensus 250 ~~~l~~~i~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 250 YWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCCCCceEEEec
Confidence 99999999999999999999999998854
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=5.8e-40 Score=345.16 Aligned_cols=214 Identities=17% Similarity=0.273 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCC
Q 004974 209 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 288 (721)
Q Consensus 209 ~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~ 288 (721)
....++++++++++++++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++ +
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~ 138 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N 138 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHH-HcCCC
Q 004974 289 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVL-AKNPQ 366 (721)
Q Consensus 289 ~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L-~~~p~ 366 (721)
++.|+|++|+||+ |++|++||+.++|||+.+ ..+.|||+. ..|..+.+.++| +|.+++.++++++.+.+ +.++.
T Consensus 139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~-~~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~ 214 (285)
T 3udc_A 139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKD-SMMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD 214 (285)
T ss_dssp TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSS-CEEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCC-CceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999 999999999999999999 459999985 455668999999 99999988776655444 44444
Q ss_pred ccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 004974 367 VEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF 439 (721)
Q Consensus 367 v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~~ 439 (721)
+.++ +|.+.+.++++++ +. ++++||++.. +++.++++++++|+++|+++||+||||+|+|+...
T Consensus 215 ~~~~--~~~v~~~~~~~s~--i~--~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~ 278 (285)
T 3udc_A 215 LIEG--PTVLGITDMQDSK--LV--IMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR 278 (285)
T ss_dssp BSSC--CEEEEEEEEETTE--EE--EEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred cccC--cccccccccCCCE--EE--EEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence 4443 4678999999985 44 8899988764 46789999999999999999999999999998654
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=69.37 E-value=1e+02 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCCccccccccEEEEEeeC
Q 004974 352 SIVADMRKVLAKNPQVEQQRLHRRVFLDNIN 382 (721)
Q Consensus 352 ~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~ 382 (721)
++...+.+.++++.--..-| +..+.+.+..
T Consensus 251 ~l~~~I~~~f~~~gI~ipfP-~~~v~~~~~~ 280 (285)
T 3udc_A 251 DIRYRVKKMFDQKNISFPYP-QMDVNFKRVK 280 (285)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-CCEEEEEEC-
T ss_pred HHHHHHHHHHHHCCCcCcCC-CEEEEeCcCC
Confidence 55566777776664333333 3345555543
No 4
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=66.57 E-value=63 Score=33.18 Aligned_cols=31 Identities=3% Similarity=0.148 Sum_probs=15.7
Q ss_pred EEEEEEEeccCCHHHHH-HHHHHHHHHHHcCC
Q 004974 335 RIKTHLAISHLDVHKIN-SIVADMRKVLAKNP 365 (721)
Q Consensus 335 ri~~~I~I~ytD~ekv~-~i~~~l~e~L~~~p 365 (721)
.+.+.+.+...+...++ ++.+.+.+.++++.
T Consensus 234 ~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~g 265 (286)
T 2vv5_A 234 NFVVRVWSNSGDLQNVYWDVLERIKREFDAAG 265 (286)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEccchHHHHHHHHHHHHHHHHHHCC
Confidence 34444444443433333 55566677776653
No 5
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.40 E-value=11 Score=30.14 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=29.0
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEeceeeEEEEe---cCCcEEEEecccc
Q 004974 273 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRG---EDREAVHIPNHKF 320 (721)
Q Consensus 273 rPFrVGD~I~I~i~g--~~v~G~VeeIgL~stT~IRt---~Dg~~V~IPNs~l 320 (721)
-.|.+||.|+| ++| .+..|+|++++--. .++.- .-.+.+-+|++.+
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 47999999999 332 45899999998643 33332 1123555555543
No 6
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=55.42 E-value=30 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=26.1
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEece---eeEEEEecCCcEE
Q 004974 273 RPFVLNEWIQTKIEG--YEVSGTVEHVGWW---SPTIVRGEDREAV 313 (721)
Q Consensus 273 rPFrVGD~I~I~i~g--~~v~G~VeeIgL~---stT~IRt~Dg~~V 313 (721)
-+|++||.|+| ++| .+..|.|++++.- . +...+.-|+.+
T Consensus 3 ~~~~~Gd~V~V-~~Gpf~g~~g~v~~v~~~k~~v-~V~v~~~Gr~t 46 (58)
T 1nz9_A 3 VAFREGDQVRV-VSGPFADFTGTVTEINPERGKV-KVMVTIFGRET 46 (58)
T ss_dssp CSCCTTCEEEE-CSGGGTTCEEEEEEEETTTTEE-EEEEESSSSEE
T ss_pred cccCCCCEEEE-eecCCCCcEEEEEEEcCCCCEE-EEEEEeCCCEE
Confidence 37899999998 333 3689999999763 3 33344445443
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=46.07 E-value=45 Score=27.73 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=28.7
Q ss_pred ecCCccCCcEEEEeecC--CCeEEEEEEEeceeeEEEEecCCcEEEE
Q 004974 271 ATRPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRGEDREAVHI 315 (721)
Q Consensus 271 ~~rPFrVGD~I~I~i~g--~~v~G~VeeIgL~stT~IRt~Dg~~V~I 315 (721)
+.+-|++||.|.+ +.| .+..|.|..+.=-..|.+-+..++.+.|
T Consensus 14 LrK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 14 LRKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CCSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred ceeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 3478999999998 443 4578999888644424444444544444
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=44.68 E-value=19 Score=32.72 Aligned_cols=19 Identities=5% Similarity=0.262 Sum_probs=17.6
Q ss_pred hhhheeecCCccCCcEEEE
Q 004974 265 SSAMIHATRPFVLNEWIQT 283 (721)
Q Consensus 265 aGi~I~~~rPFrVGD~I~I 283 (721)
+|+||-.++||.+||.|.+
T Consensus 32 GGlFI~T~~~~~~G~~V~l 50 (117)
T 3cnr_A 32 GGIFVPTPKRYMLGDEVFL 50 (117)
T ss_dssp CEEEEECCSCCCTTCEEEE
T ss_pred CeEEEeeCCccCCCCEEEE
Confidence 6799999999999999988
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=44.27 E-value=4.3e+02 Score=31.82 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004974 131 VMTSYIQPLMLW 142 (721)
Q Consensus 131 il~~l~~PL~l~ 142 (721)
++-.+.-|+.++
T Consensus 899 l~~l~~i~~~~~ 910 (1057)
T 4dx5_A 899 FSVMLVVPLGVI 910 (1057)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 10
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=36.54 E-value=1.8e+02 Score=32.48 Aligned_cols=152 Identities=11% Similarity=0.167 Sum_probs=96.4
Q ss_pred HHhhhhhhee-ecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEE
Q 004974 261 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 339 (721)
Q Consensus 261 ~N~iaGi~I~-~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~ 339 (721)
.++=.|++|. ++.|+-.|=+|.+..++ |....|++.. .++..+.|+.++-. +.....|.|.+.--+.+.
T Consensus 86 pDlPkgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIV 155 (478)
T 3h0l_B 86 PDLPKGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIV 155 (478)
T ss_dssp TTCTTSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEE
T ss_pred CCCCcccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEe
Confidence 3455688885 78899999999984332 4457899998 99999999999972 345677888776666655
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHcCCCcccccc--ccE----EEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHH
Q 004974 340 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRR----VFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAI 413 (721)
Q Consensus 340 I~I~ytD~ekv~~i~~~l~e~L~~~p~v~~~~~--~P~----V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L 413 (721)
-.=+..+++.+.+.++.|+.+|+...--+...- .-+ |-+...+... +--++-++.- ..+..++..|
T Consensus 156 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~------~GtRvEiKNl--nS~~~v~~AI 227 (478)
T 3h0l_B 156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKE------FGTRVEIKNV--NSFRFVQKAL 227 (478)
T ss_dssp ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCS------CCCCEEEECC--CSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCC------CcceEEEecc--ccHHHHHHHH
Confidence 444557899999999999888876543222110 111 2222222211 1123344443 4456677777
Q ss_pred HHHHHHHHH--HCCCccCC
Q 004974 414 LLDLLRVIS--HHRARLAT 430 (721)
Q Consensus 414 ~~~Il~~~~--e~GIeia~ 430 (721)
..++.+..+ +.|-++.-
T Consensus 228 ~yEi~RQ~~~le~Gg~V~q 246 (478)
T 3h0l_B 228 EYEIERQINVVEEGGEVVQ 246 (478)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHcCCCeec
Confidence 777777543 45655543
No 11
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=30.16 E-value=2.8e+02 Score=31.06 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=99.0
Q ss_pred HHhhhhhhee-ecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEE
Q 004974 261 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 339 (721)
Q Consensus 261 ~N~iaGi~I~-~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~ 339 (721)
.++=.|++|. ++.|+-.|=+|.+..+ |.-..|++.. ..+..+.|+.++-.. .....|.|.+.--+.+.
T Consensus 84 pDlPkgYQITQ~~~Pia~~G~l~i~~~-----~~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIV 152 (483)
T 3ip4_B 84 PDNPKAYQISQFDQPIGENGYIDIEVD-----GETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIV 152 (483)
T ss_dssp TTBTTSEEEECSSSCSEEEEEEEECSS-----SSCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEE
T ss_pred CCCCcCccccccccCeecCCEEEEEec-----CceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEe
Confidence 4555688885 7889999999998322 2236789988 999999999998643 45778888776666655
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHcCCCccccc--cccE----EEEEeeCCCcccceeeEEEEEEEecCChHHHHHHHHHH
Q 004974 340 LAISHLDVHKINSIVADMRKVLAKNPQVEQQR--LHRR----VFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAI 413 (721)
Q Consensus 340 I~I~ytD~ekv~~i~~~l~e~L~~~p~v~~~~--~~P~----V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L 413 (721)
-.=+..+++.+.+.++.|+.+|+...--+... -.-+ |-+...+... +--++-++.- ..+..++..|
T Consensus 153 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~------~GtRvEiKNl--nS~~~v~~AI 224 (483)
T 3ip4_B 153 SEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEK------FGTKAELKNL--NSFNYVRKGL 224 (483)
T ss_dssp ECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCC------CCCEEEEECC--CSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCC------CcceEEEecc--cCHHHHHHHH
Confidence 55556789999999999998887654222111 0111 2223322211 2234445543 4456677778
Q ss_pred HHHHHHHHH--HCCCccCCCcEE
Q 004974 414 LLDLLRVIS--HHRARLATPIRT 434 (721)
Q Consensus 414 ~~~Il~~~~--e~GIeia~P~~t 434 (721)
..++.+..+ +.|-++.-++|.
T Consensus 225 ~yEi~RQ~~~le~Gg~v~qETR~ 247 (483)
T 3ip4_B 225 EYEEKRQEEELLNGGEIGQETRR 247 (483)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEecccee
Confidence 777777554 456666544443
No 12
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=30.02 E-value=86 Score=28.74 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.1
Q ss_pred heeecCCccCCcEEEE
Q 004974 268 MIHATRPFVLNEWIQT 283 (721)
Q Consensus 268 ~I~~~rPFrVGD~I~I 283 (721)
-+-|.+|..+||.|.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 4678999999999987
No 13
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=27.53 E-value=8.7e+02 Score=29.15 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=30.1
Q ss_pred CceEEEEEEEecc-CCHHHHHHHHHHHHHHHH--cCCCcc
Q 004974 332 SHWRIKTHLAISH-LDVHKINSIVADMRKVLA--KNPQVE 368 (721)
Q Consensus 332 ~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~--~~p~v~ 368 (721)
+...+.+.+..+. ++.++..++.+.+++.++ +.|++.
T Consensus 568 d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~ 607 (1057)
T 4dx5_A 568 DQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVE 607 (1057)
T ss_dssp CCSEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred CCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 3456677777777 899999999999999999 888765
No 14
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=23.57 E-value=5.1e+02 Score=28.78 Aligned_cols=146 Identities=8% Similarity=0.063 Sum_probs=91.5
Q ss_pred Hhhhhhhee-ecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecccCCceEEEEEE
Q 004974 262 NFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 340 (721)
Q Consensus 262 N~iaGi~I~-~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr~~~~ri~~~I 340 (721)
++=.|++|. ++.|+-.|=+|.+ ++ ..|++.. .++..+.|+.++-. ......|.|.+.--+.+.-
T Consensus 85 DlPkGYQITQ~~~PIa~~G~l~i----~g-----k~I~I~r-ihLEEDaGK~ih~~-----~~slvD~NRaGvPLiEIVT 149 (466)
T 3kfu_F 85 DLPKNYQISQYDLPLGRGGSLPL----GE-----RRVRIKR-LHLEEDAGKSLHLE-----GRTLLDLNRAGSPLIELVT 149 (466)
T ss_dssp TCTTSEEEECSSSCSEEECEEEE----TT-----EEEEEEE-EEEEECCCEEEEET-----TEEEEETTSTTCEEEEEEE
T ss_pred CCCcCcccccccCCEecCcEEEE----CC-----eEEeeEE-EEecccccccccCC-----CceEEecCCCCCcEEEEec
Confidence 444678875 7789999999987 33 6889998 99999999999873 3456778887766666544
Q ss_pred EeccCCHHHHHHHHHHHHHHHHcCCCcccccc--ccEEEEE-eeCCCcccceeeEEEEEEEecCChHHHHHHHHHHHHHH
Q 004974 341 AISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRVFLD-NINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDL 417 (721)
Q Consensus 341 ~I~ytD~ekv~~i~~~l~e~L~~~p~v~~~~~--~P~V~v~-~~~~s~~sL~V~I~V~~~v~~~~~~~~~~vr~~L~~~I 417 (721)
.=+..+++++++.++.|+.+|+...--+...- .-++-+. .+.+.+. . +--++-++.- ..+..++..+..++
T Consensus 150 ePDirspeEA~ayl~~Lr~ilrylgvsdg~meeGslR~DvNVSvr~~g~--~--~GtRvEIKNl--NSfr~V~kAI~yEi 223 (466)
T 3kfu_F 150 EPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGE--P--LGTKVEIKNL--NSFKSVQRALEYEI 223 (466)
T ss_dssp CTTBCCHHHHHHHHHHHHHHHHHHTSBCCCGGGTCEEEEEEEEECCSSS--S--CCCCEEEEEE--CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCccccCcEEEeeeEEecCCCC--C--CCceEEEecc--cCHHHHHHHHHHHH
Confidence 44557899999999999988876542222110 1122111 1122110 0 2233444433 34566777787777
Q ss_pred HHHHH--HCCCcc
Q 004974 418 LRVIS--HHRARL 428 (721)
Q Consensus 418 l~~~~--e~GIei 428 (721)
.+..+ +.|-++
T Consensus 224 ~RQ~~lLe~Gg~V 236 (466)
T 3kfu_F 224 RRQTEILRRGEKV 236 (466)
T ss_dssp HHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCe
Confidence 77554 355554
No 15
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=22.95 E-value=2.1e+02 Score=25.94 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.7
Q ss_pred hhhhheeecCCccCCcEEEE
Q 004974 264 LSSAMIHATRPFVLNEWIQT 283 (721)
Q Consensus 264 iaGi~I~~~rPFrVGD~I~I 283 (721)
..++-+-|.+|..+||.|.+
T Consensus 96 ~~~~~~rF~~PV~~Gd~l~~ 115 (161)
T 1q6w_A 96 FGIKDVRFLRPVFIGDTIAA 115 (161)
T ss_dssp EEEEEEEECSCCBTTCEEEE
T ss_pred ceeEEEEEecCCCCCCEEEE
Confidence 45566789999999999987
No 16
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=22.03 E-value=5.7e+02 Score=26.14 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004974 217 AVYSAVWVASASLFMELL 234 (721)
Q Consensus 217 ii~ivI~iIaiiiiL~~l 234 (721)
++-+++|++++++.+..+
T Consensus 127 ~~i~~~W~~~~~~~~p~~ 144 (452)
T 3rze_A 127 ATILGAWFLSFLWVIPIL 144 (452)
T ss_dssp HHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666655555444
No 17
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=21.65 E-value=5.9e+02 Score=30.63 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 004974 132 MTSYIQPLMLW 142 (721)
Q Consensus 132 l~~l~~PL~l~ 142 (721)
+-.+.-|+.++
T Consensus 906 ~il~~ip~~~~ 916 (1054)
T 3ne5_A 906 LIISSVPFALV 916 (1054)
T ss_dssp HHHTTSHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 18
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=21.62 E-value=8.9e+02 Score=29.10 Aligned_cols=6 Identities=33% Similarity=0.539 Sum_probs=2.5
Q ss_pred HHHHHH
Q 004974 135 YIQPLM 140 (721)
Q Consensus 135 l~~PL~ 140 (721)
+.-|+.
T Consensus 902 ~~ip~~ 907 (1052)
T 2v50_A 902 LVVPLG 907 (1052)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 334444
No 19
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=21.31 E-value=3e+02 Score=26.52 Aligned_cols=20 Identities=10% Similarity=-0.096 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 004974 238 TQKWLTAGGLGTVLLTLAGR 257 (721)
Q Consensus 238 itsLLaslGi~gvalgLAaq 257 (721)
...++..+|++-.++|+++.
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~ 92 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLF 92 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 20
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=20.80 E-value=89 Score=26.88 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.6
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEec
Q 004974 273 RPFVLNEWIQTKIEGYEVSGTVEHVGW 299 (721)
Q Consensus 273 rPFrVGD~I~I~i~g~~v~G~VeeIgL 299 (721)
+.++|||+|++ ..++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 46899999998 44567899998884
Done!