Query 004976
Match_columns 721
No_of_seqs 726 out of 4047
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 16:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.9E-72 4.2E-77 622.7 71.3 638 32-699 53-691 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.2E-69 2.5E-74 600.6 70.1 630 36-695 91-722 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2E-62 4.4E-67 529.5 68.3 545 101-665 369-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.3E-62 1.4E-66 525.7 70.8 548 63-630 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.9E-55 1.1E-59 472.2 56.1 512 136-665 86-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.5E-55 9.7E-60 472.5 52.2 476 169-662 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-41 2.7E-46 389.0 82.8 624 45-690 274-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-40 5.5E-45 378.2 84.0 632 45-695 172-868 (899)
9 PRK11447 cellulose synthase su 100.0 3.2E-32 7E-37 309.1 75.1 596 43-657 39-699 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-31 3.1E-36 303.9 71.9 599 43-662 73-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.4E-29 9.6E-34 269.3 71.0 603 34-672 46-718 (987)
12 PRK09782 bacteriophage N4 rece 100.0 9.5E-27 2.1E-31 251.4 70.7 590 70-695 47-708 (987)
13 KOG2002 TPR-containing nuclear 100.0 2E-27 4.3E-32 238.6 59.6 602 47-661 145-801 (1018)
14 KOG2002 TPR-containing nuclear 100.0 2.9E-27 6.4E-32 237.4 58.0 607 47-666 109-751 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 1.2E-27 2.7E-32 227.7 41.4 453 210-682 51-508 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 6.8E-27 1.5E-31 222.7 38.5 446 178-643 54-504 (966)
17 KOG0495 HAT repeat protein [RN 100.0 1.2E-20 2.6E-25 181.6 65.4 620 37-695 253-882 (913)
18 KOG2076 RNA polymerase III tra 99.9 1.8E-20 3.9E-25 187.9 57.4 650 31-688 133-889 (895)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-21 3.3E-26 208.6 52.6 256 395-657 307-570 (615)
20 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-21 5.3E-26 207.1 52.6 431 175-623 130-571 (615)
21 KOG2076 RNA polymerase III tra 99.9 1.9E-18 4.1E-23 173.6 57.3 619 68-693 140-849 (895)
22 PRK10049 pgaA outer membrane p 99.9 2.5E-20 5.4E-25 202.6 45.6 430 206-674 14-470 (765)
23 PRK10049 pgaA outer membrane p 99.9 2.3E-19 5.1E-24 195.1 51.1 407 72-518 20-456 (765)
24 PRK15174 Vi polysaccharide exp 99.9 7.1E-20 1.5E-24 194.6 45.8 358 45-412 18-382 (656)
25 PRK15174 Vi polysaccharide exp 99.9 7.7E-20 1.7E-24 194.4 45.6 345 44-410 54-402 (656)
26 KOG0495 HAT repeat protein [RN 99.9 2.7E-17 5.9E-22 158.8 57.8 592 43-673 296-894 (913)
27 PRK14574 hmsH outer membrane p 99.9 1.1E-18 2.4E-23 185.4 53.2 442 31-483 33-513 (822)
28 PRK11788 tetratricopeptide rep 99.9 6.1E-21 1.3E-25 194.2 33.9 308 69-383 37-354 (389)
29 PRK14574 hmsH outer membrane p 99.9 2.5E-18 5.3E-23 182.7 54.4 444 66-518 33-513 (822)
30 PRK11788 tetratricopeptide rep 99.9 7.2E-21 1.6E-25 193.6 34.1 299 105-410 38-346 (389)
31 KOG1915 Cell cycle control pro 99.9 4E-17 8.8E-22 151.7 49.8 451 66-533 72-549 (677)
32 KOG2003 TPR repeat-containing 99.9 3.5E-18 7.6E-23 157.7 33.9 280 391-681 428-710 (840)
33 KOG1915 Cell cycle control pro 99.9 8.9E-16 1.9E-20 142.9 49.2 437 184-637 85-548 (677)
34 KOG2003 TPR repeat-containing 99.9 2.6E-18 5.6E-23 158.5 31.7 494 66-609 200-709 (840)
35 KOG2047 mRNA splicing factor [ 99.8 3.7E-13 8.1E-18 130.5 60.5 636 34-693 28-722 (835)
36 KOG1173 Anaphase-promoting com 99.8 1.1E-14 2.3E-19 139.3 41.2 286 380-675 242-533 (611)
37 KOG1155 Anaphase-promoting com 99.8 8.6E-15 1.9E-19 136.3 39.1 366 237-621 159-534 (559)
38 KOG2047 mRNA splicing factor [ 99.8 2.7E-12 5.8E-17 124.7 54.8 575 47-652 83-717 (835)
39 KOG1155 Anaphase-promoting com 99.8 1.1E-13 2.5E-18 128.9 42.3 364 309-692 161-534 (559)
40 KOG0547 Translocase of outer m 99.8 6.6E-15 1.4E-19 137.9 34.0 221 392-623 336-566 (606)
41 KOG3785 Uncharacterized conser 99.8 1.1E-13 2.3E-18 124.4 39.2 470 214-718 64-555 (557)
42 KOG0547 Translocase of outer m 99.7 1.4E-14 3E-19 135.8 33.3 79 44-124 127-205 (606)
43 KOG1173 Anaphase-promoting com 99.7 1.7E-13 3.7E-18 131.2 41.2 283 344-636 241-529 (611)
44 KOG1126 DNA-binding cell divis 99.7 1.2E-15 2.6E-20 148.9 25.5 292 360-663 332-623 (638)
45 KOG3785 Uncharacterized conser 99.7 1.3E-12 2.9E-17 117.5 41.7 447 37-518 29-490 (557)
46 KOG1126 DNA-binding cell divis 99.7 2.1E-15 4.6E-20 147.2 25.5 285 82-377 334-621 (638)
47 KOG4422 Uncharacterized conser 99.7 2.3E-12 4.9E-17 119.1 42.8 436 114-589 127-591 (625)
48 KOG4422 Uncharacterized conser 99.7 8E-12 1.7E-16 115.5 45.3 240 134-377 204-463 (625)
49 TIGR00540 hemY_coli hemY prote 99.7 7E-14 1.5E-18 141.2 35.2 292 357-657 94-398 (409)
50 PRK10747 putative protoheme IX 99.7 7.4E-14 1.6E-18 140.1 34.8 285 80-375 97-389 (398)
51 TIGR00540 hemY_coli hemY prote 99.7 7.7E-14 1.7E-18 140.9 35.2 295 74-375 91-398 (409)
52 KOG1156 N-terminal acetyltrans 99.7 1.2E-10 2.6E-15 113.9 52.6 472 29-516 4-509 (700)
53 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.4E-21 152.5 12.5 261 72-339 13-275 (280)
54 KOG4162 Predicted calmodulin-b 99.7 1.1E-11 2.5E-16 123.4 45.6 436 204-664 320-787 (799)
55 PF13429 TPR_15: Tetratricopep 99.7 3E-16 6.5E-21 150.6 13.6 262 387-657 13-276 (280)
56 COG2956 Predicted N-acetylgluc 99.7 3.2E-13 6.9E-18 120.1 30.6 289 80-376 48-347 (389)
57 COG2956 Predicted N-acetylgluc 99.7 2.4E-13 5.2E-18 120.9 28.9 289 45-340 48-346 (389)
58 PRK10747 putative protoheme IX 99.7 6.1E-13 1.3E-17 133.6 35.7 284 114-410 96-389 (398)
59 KOG1156 N-terminal acetyltrans 99.7 7.7E-11 1.7E-15 115.2 46.2 451 149-620 19-508 (700)
60 KOG1174 Anaphase-promoting com 99.6 6.7E-11 1.5E-15 109.0 39.3 317 356-685 205-525 (564)
61 KOG1127 TPR repeat-containing 99.6 2.2E-10 4.7E-15 117.3 46.2 581 47-657 473-1103(1238)
62 KOG4162 Predicted calmodulin-b 99.6 1.4E-10 2.9E-15 115.9 43.9 441 133-623 319-783 (799)
63 KOG1129 TPR repeat-containing 99.6 1.1E-13 2.4E-18 123.0 19.7 235 422-664 226-462 (478)
64 PRK12370 invasion protein regu 99.6 1E-12 2.2E-17 138.0 29.5 249 81-341 275-535 (553)
65 COG3071 HemY Uncharacterized e 99.6 1.4E-11 3E-16 113.6 32.6 288 79-376 96-390 (400)
66 COG3071 HemY Uncharacterized e 99.6 3.3E-11 7.2E-16 111.2 33.8 294 38-341 90-390 (400)
67 KOG2376 Signal recognition par 99.6 5.5E-10 1.2E-14 108.2 42.2 148 469-620 356-517 (652)
68 KOG4318 Bicoid mRNA stability 99.6 1.2E-10 2.7E-15 117.7 38.0 570 61-673 19-639 (1088)
69 KOG2376 Signal recognition par 99.5 6E-10 1.3E-14 107.9 40.1 455 142-655 17-517 (652)
70 KOG1127 TPR repeat-containing 99.5 8.4E-10 1.8E-14 113.1 43.1 275 45-341 381-659 (1238)
71 KOG0548 Molecular co-chaperone 99.5 5.4E-11 1.2E-15 114.0 32.4 237 422-676 227-471 (539)
72 PRK12370 invasion protein regu 99.5 5.4E-12 1.2E-16 132.6 27.9 214 469-693 319-535 (553)
73 KOG1129 TPR repeat-containing 99.5 8.2E-13 1.8E-17 117.5 18.0 233 246-484 227-459 (478)
74 KOG1174 Anaphase-promoting com 99.5 2.8E-09 6.2E-14 98.6 39.7 287 291-588 210-500 (564)
75 KOG0985 Vesicle coat protein c 99.5 6.5E-08 1.4E-12 99.6 51.8 198 453-676 1103-1324(1666)
76 PF12569 NARP1: NMDA receptor- 99.5 8.6E-10 1.9E-14 111.5 38.7 127 281-410 198-333 (517)
77 KOG4318 Bicoid mRNA stability 99.5 7.6E-10 1.7E-14 112.1 37.2 274 89-397 12-286 (1088)
78 KOG3617 WD40 and TPR repeat-co 99.5 3.7E-08 8.1E-13 99.1 48.4 540 45-658 741-1359(1416)
79 TIGR02521 type_IV_pilW type IV 99.5 3.1E-11 6.7E-16 113.5 26.7 200 454-657 31-231 (234)
80 KOG0624 dsRNA-activated protei 99.5 1.2E-09 2.6E-14 98.5 33.4 314 279-624 40-371 (504)
81 TIGR02521 type_IV_pilW type IV 99.5 3.7E-11 7.9E-16 113.0 25.5 200 66-269 30-230 (234)
82 COG3063 PilF Tfp pilus assembl 99.5 1.1E-10 2.3E-15 99.6 24.6 209 456-670 37-246 (250)
83 PF12569 NARP1: NMDA receptor- 99.4 2.2E-09 4.8E-14 108.6 37.9 289 44-341 16-334 (517)
84 PRK11189 lipoprotein NlpI; Pro 99.4 5.4E-11 1.2E-15 114.1 25.5 221 43-272 37-266 (296)
85 KOG0548 Molecular co-chaperone 99.4 7.9E-10 1.7E-14 106.2 31.9 239 385-641 227-472 (539)
86 KOG4340 Uncharacterized conser 99.4 3.9E-10 8.5E-15 99.5 26.1 323 28-372 8-335 (459)
87 KOG3616 Selective LIM binding 99.4 7.7E-09 1.7E-13 102.6 37.7 167 285-478 740-906 (1636)
88 PRK11189 lipoprotein NlpI; Pro 99.4 3.9E-10 8.4E-15 108.3 27.2 233 434-677 41-283 (296)
89 KOG1840 Kinesin light chain [C 99.4 4.5E-10 9.9E-15 111.9 27.9 238 419-656 199-477 (508)
90 KOG0624 dsRNA-activated protei 99.4 3.2E-09 6.9E-14 95.8 29.8 331 66-449 37-371 (504)
91 COG3063 PilF Tfp pilus assembl 99.4 8.5E-10 1.8E-14 94.2 24.2 199 421-623 37-236 (250)
92 KOG3617 WD40 and TPR repeat-co 99.4 3.5E-08 7.6E-13 99.3 38.7 480 74-624 807-1360(1416)
93 KOG1125 TPR repeat-containing 99.3 1.8E-10 4E-15 111.4 21.3 231 33-270 286-526 (579)
94 KOG1840 Kinesin light chain [C 99.3 7.2E-10 1.6E-14 110.5 24.5 168 66-234 198-394 (508)
95 KOG3616 Selective LIM binding 99.3 7.2E-08 1.6E-12 95.9 37.3 367 179-617 564-931 (1636)
96 KOG4340 Uncharacterized conser 99.3 1.7E-08 3.7E-13 89.4 27.2 316 70-407 13-335 (459)
97 cd05804 StaR_like StaR_like; a 99.3 2.7E-08 5.8E-13 100.0 33.0 197 35-235 9-214 (355)
98 cd05804 StaR_like StaR_like; a 99.2 5.2E-08 1.1E-12 97.9 34.0 302 104-410 8-335 (355)
99 KOG1125 TPR repeat-containing 99.2 3.5E-09 7.6E-14 102.7 22.2 222 111-339 294-525 (579)
100 PLN02789 farnesyltranstransfer 99.2 1.6E-08 3.5E-13 96.6 26.0 216 32-254 38-267 (320)
101 KOG0985 Vesicle coat protein c 99.2 1.3E-05 2.9E-10 83.3 52.9 86 523-616 1103-1188(1666)
102 PRK04841 transcriptional regul 99.1 7.3E-07 1.6E-11 101.8 36.6 371 284-658 348-760 (903)
103 PLN02789 farnesyltranstransfer 99.1 2.8E-07 6E-12 88.2 27.4 207 429-641 47-267 (320)
104 PRK04841 transcriptional regul 99.0 1.4E-06 3E-11 99.5 38.0 339 286-624 383-761 (903)
105 KOG2053 Mitochondrial inherita 99.0 5.5E-05 1.2E-09 78.3 46.9 119 78-200 20-138 (932)
106 KOG1070 rRNA processing protei 99.0 2.7E-07 5.9E-12 98.7 26.1 235 90-329 1447-1688(1710)
107 KOG1914 mRNA cleavage and poly 99.0 4.3E-05 9.4E-10 74.3 43.0 85 56-145 10-94 (656)
108 PF04733 Coatomer_E: Coatomer 99.0 4E-08 8.6E-13 92.7 17.7 154 498-664 111-269 (290)
109 PRK15359 type III secretion sy 99.0 4.4E-08 9.5E-13 82.4 16.1 122 544-673 13-134 (144)
110 PF13041 PPR_2: PPR repeat fam 99.0 2.1E-09 4.5E-14 71.2 6.3 49 170-218 1-49 (50)
111 PRK10370 formate-dependent nit 99.0 1.5E-07 3.4E-12 83.7 20.1 159 497-672 24-185 (198)
112 PF04733 Coatomer_E: Coatomer 98.9 2.4E-08 5.3E-13 94.1 15.1 254 429-699 11-270 (290)
113 KOG1070 rRNA processing protei 98.9 6.8E-07 1.5E-11 95.8 25.8 245 124-374 1446-1698(1710)
114 TIGR03302 OM_YfiO outer membra 98.9 2.2E-07 4.9E-12 86.8 20.5 187 64-271 30-232 (235)
115 KOG1128 Uncharacterized conser 98.9 1E-07 2.2E-12 95.4 18.3 219 417-657 396-615 (777)
116 KOG1914 mRNA cleavage and poly 98.9 9.1E-05 2E-09 72.1 43.1 186 470-657 309-500 (656)
117 TIGR03302 OM_YfiO outer membra 98.9 3E-07 6.5E-12 85.9 20.8 187 451-657 30-231 (235)
118 COG5010 TadD Flp pilus assembl 98.9 3.6E-07 7.9E-12 80.4 19.4 163 100-267 65-227 (257)
119 KOG2053 Mitochondrial inherita 98.9 0.00017 3.7E-09 74.8 48.4 145 34-183 10-155 (932)
120 PRK10370 formate-dependent nit 98.9 1.2E-07 2.7E-12 84.3 16.6 125 80-208 52-179 (198)
121 PF13041 PPR_2: PPR repeat fam 98.9 5.4E-09 1.2E-13 69.2 5.6 49 205-253 1-49 (50)
122 COG5010 TadD Flp pilus assembl 98.9 7.3E-07 1.6E-11 78.5 19.9 164 488-656 66-229 (257)
123 KOG1128 Uncharacterized conser 98.8 1.3E-06 2.7E-11 87.8 23.3 218 312-552 398-615 (777)
124 PRK15359 type III secretion sy 98.8 3.6E-07 7.8E-12 76.8 16.5 122 510-638 14-135 (144)
125 PRK15179 Vi polysaccharide bio 98.8 2.1E-06 4.7E-11 90.8 25.5 132 488-623 85-217 (694)
126 PRK14720 transcript cleavage f 98.8 2.6E-06 5.7E-11 90.9 25.8 222 64-323 28-268 (906)
127 PRK14720 transcript cleavage f 98.8 3.6E-06 7.9E-11 89.8 26.5 270 382-711 31-302 (906)
128 KOG3060 Uncharacterized conser 98.8 5.9E-06 1.3E-10 72.1 22.5 188 469-662 27-222 (289)
129 KOG3081 Vesicle coat complex C 98.7 7.5E-06 1.6E-10 72.1 22.3 247 147-410 18-270 (299)
130 PRK15179 Vi polysaccharide bio 98.7 2.2E-06 4.8E-11 90.7 22.7 151 521-676 83-234 (694)
131 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.3E-10 71.2 22.8 250 74-340 15-270 (299)
132 TIGR02552 LcrH_SycD type III s 98.7 5.7E-07 1.2E-11 75.6 14.7 119 546-670 5-124 (135)
133 TIGR02552 LcrH_SycD type III s 98.7 1.1E-06 2.4E-11 73.8 15.0 116 54-174 5-120 (135)
134 KOG3060 Uncharacterized conser 98.6 1.9E-05 4.1E-10 69.1 21.6 189 44-236 24-220 (289)
135 KOG0550 Molecular chaperone (D 98.6 4.4E-05 9.5E-10 71.7 23.2 270 47-341 64-350 (486)
136 COG4783 Putative Zn-dependent 98.5 6.4E-05 1.4E-09 72.6 23.9 119 458-580 310-429 (484)
137 KOG0550 Molecular chaperone (D 98.5 0.00018 3.9E-09 67.8 25.2 289 213-552 55-349 (486)
138 COG4783 Putative Zn-dependent 98.4 0.00012 2.6E-09 70.8 23.2 150 100-271 304-454 (484)
139 KOG0553 TPR repeat-containing 98.4 2.9E-06 6.3E-11 76.4 11.6 101 569-673 91-191 (304)
140 COG4700 Uncharacterized protei 98.4 4.4E-05 9.6E-10 63.3 15.8 148 44-199 72-220 (251)
141 PRK15363 pathogenicity island 98.4 1.7E-05 3.6E-10 65.3 13.4 95 561-657 37-131 (157)
142 PF09976 TPR_21: Tetratricopep 98.3 2.1E-05 4.5E-10 66.6 14.5 117 536-655 23-144 (145)
143 PF09976 TPR_21: Tetratricopep 98.3 2.9E-05 6.3E-10 65.7 15.0 115 80-197 24-143 (145)
144 PRK15363 pathogenicity island 98.3 4E-05 8.7E-10 63.1 14.3 98 524-623 35-132 (157)
145 PLN03088 SGT1, suppressor of 98.3 1.6E-05 3.4E-10 78.4 14.5 104 566-673 9-112 (356)
146 KOG0553 TPR repeat-containing 98.3 9.2E-06 2E-10 73.3 11.4 85 46-132 95-179 (304)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.2E-05 6.9E-10 75.7 15.6 123 528-656 173-295 (395)
148 PF12854 PPR_1: PPR repeat 98.2 1.8E-06 3.9E-11 50.9 3.9 32 167-198 2-33 (34)
149 PF12895 Apc3: Anaphase-promot 98.2 2.1E-06 4.6E-11 64.6 5.3 82 45-128 2-84 (84)
150 COG3898 Uncharacterized membra 98.2 0.0064 1.4E-07 57.3 31.1 221 431-662 166-396 (531)
151 PF14938 SNAP: Soluble NSF att 98.2 0.00017 3.6E-09 69.0 18.3 91 180-271 122-225 (282)
152 PF12854 PPR_1: PPR repeat 98.2 2.9E-06 6.2E-11 50.1 3.9 32 202-233 2-33 (34)
153 COG4235 Cytochrome c biogenesi 98.2 0.00013 2.8E-09 66.5 16.2 101 99-201 153-256 (287)
154 COG3898 Uncharacterized membra 98.2 0.0068 1.5E-07 57.1 30.1 311 49-377 70-393 (531)
155 TIGR02795 tol_pal_ybgF tol-pal 98.2 6.5E-05 1.4E-09 61.4 13.4 98 68-166 3-105 (119)
156 cd00189 TPR Tetratricopeptide 98.2 2.9E-05 6.2E-10 60.6 10.9 94 562-657 3-96 (100)
157 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.5E-05 2.1E-09 72.4 16.2 121 494-620 174-294 (395)
158 PRK10866 outer membrane biogen 98.2 0.00063 1.4E-08 62.8 20.8 68 66-134 31-101 (243)
159 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.6E-05 1.6E-09 61.0 13.2 94 562-657 5-104 (119)
160 COG4700 Uncharacterized protei 98.1 0.00076 1.7E-08 56.2 18.1 133 521-657 86-221 (251)
161 PF12895 Apc3: Anaphase-promot 98.1 5.1E-06 1.1E-10 62.5 5.2 81 572-654 2-83 (84)
162 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.011 2.4E-07 56.8 35.5 130 490-623 398-531 (660)
163 KOG1130 Predicted G-alpha GTPa 98.1 4.5E-05 9.7E-10 71.5 11.8 132 491-622 197-343 (639)
164 PLN03088 SGT1, suppressor of 98.1 0.00011 2.5E-09 72.4 15.1 91 74-166 9-99 (356)
165 cd00189 TPR Tetratricopeptide 98.0 7.4E-05 1.6E-09 58.2 11.1 95 70-166 3-97 (100)
166 COG4235 Cytochrome c biogenesi 98.0 0.00027 5.9E-09 64.5 15.1 126 542-672 140-268 (287)
167 KOG2041 WD40 repeat protein [G 98.0 0.025 5.5E-07 57.5 29.6 205 99-337 689-903 (1189)
168 PF07079 DUF1347: Protein of u 98.0 0.018 3.9E-07 55.7 43.6 79 575-655 437-521 (549)
169 PF13432 TPR_16: Tetratricopep 98.0 3E-05 6.6E-10 54.9 7.0 62 600-664 3-64 (65)
170 PRK02603 photosystem I assembl 98.0 0.00029 6.3E-09 61.7 14.7 88 526-614 37-126 (172)
171 PF13414 TPR_11: TPR repeat; P 98.0 2.5E-05 5.5E-10 56.2 6.6 64 593-657 2-66 (69)
172 PRK10866 outer membrane biogen 98.0 0.0019 4.2E-08 59.7 20.2 185 453-656 31-239 (243)
173 PF14938 SNAP: Soluble NSF att 98.0 0.0016 3.5E-08 62.3 20.4 143 498-656 103-264 (282)
174 KOG1130 Predicted G-alpha GTPa 98.0 6.8E-05 1.5E-09 70.3 10.4 94 280-373 238-341 (639)
175 PRK10153 DNA-binding transcrip 97.9 0.00054 1.2E-08 70.7 17.7 142 521-668 334-490 (517)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.00062 1.3E-08 54.2 14.1 93 563-656 5-102 (120)
177 KOG2796 Uncharacterized conser 97.9 0.012 2.6E-07 52.3 22.8 146 527-675 180-330 (366)
178 PRK02603 photosystem I assembl 97.9 0.00052 1.1E-08 60.1 15.2 95 66-161 34-130 (172)
179 PF14559 TPR_19: Tetratricopep 97.9 3.6E-05 7.8E-10 55.2 6.5 65 605-672 2-66 (68)
180 PF13414 TPR_11: TPR repeat; P 97.9 4.5E-05 9.7E-10 54.8 6.6 66 66-132 2-68 (69)
181 PF12688 TPR_5: Tetratrico pep 97.9 0.00068 1.5E-08 54.0 13.3 95 70-164 4-102 (120)
182 PF05843 Suf: Suppressor of fo 97.9 0.00025 5.5E-09 67.3 12.9 129 491-622 3-135 (280)
183 CHL00033 ycf3 photosystem I as 97.8 0.00037 8.1E-09 60.8 12.6 100 48-148 15-117 (168)
184 CHL00033 ycf3 photosystem I as 97.8 0.00033 7.1E-09 61.2 12.3 79 561-640 37-117 (168)
185 KOG2041 WD40 repeat protein [G 97.8 0.018 3.9E-07 58.5 24.7 205 239-480 689-904 (1189)
186 PF13432 TPR_16: Tetratricopep 97.8 9.9E-05 2.1E-09 52.2 6.8 58 73-131 3-60 (65)
187 PF13525 YfiO: Outer membrane 97.8 0.0016 3.4E-08 58.7 16.1 68 66-133 4-73 (203)
188 PF05843 Suf: Suppressor of fo 97.8 0.00065 1.4E-08 64.6 14.2 130 69-201 3-136 (280)
189 PRK10153 DNA-binding transcrip 97.8 0.0022 4.8E-08 66.3 18.7 62 560-623 421-482 (517)
190 PRK10803 tol-pal system protei 97.7 0.00097 2.1E-08 62.0 14.0 100 562-665 146-251 (263)
191 PF14559 TPR_19: Tetratricopep 97.7 0.00012 2.6E-09 52.4 5.9 52 45-97 4-55 (68)
192 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.06 1.3E-06 52.0 38.7 144 525-674 398-545 (660)
193 PF13371 TPR_9: Tetratricopept 97.7 0.00026 5.6E-09 51.5 7.7 66 602-670 3-68 (73)
194 KOG1258 mRNA processing protei 97.7 0.083 1.8E-06 53.4 36.4 131 209-341 47-180 (577)
195 PF13525 YfiO: Outer membrane 97.7 0.0066 1.4E-07 54.7 18.3 62 387-448 10-71 (203)
196 KOG1258 mRNA processing protei 97.6 0.12 2.5E-06 52.4 36.7 421 170-643 43-489 (577)
197 PRK15331 chaperone protein Sic 97.5 0.0059 1.3E-07 50.8 14.4 91 565-657 43-133 (165)
198 TIGR00756 PPR pentatricopeptid 97.5 0.00017 3.7E-09 43.2 4.3 32 175-206 3-34 (35)
199 KOG1941 Acetylcholine receptor 97.5 0.0066 1.4E-07 56.5 16.0 229 357-586 16-273 (518)
200 PRK10803 tol-pal system protei 97.5 0.002 4.4E-08 59.9 13.2 88 78-166 154-246 (263)
201 KOG0543 FKBP-type peptidyl-pro 97.5 0.0013 2.8E-08 62.6 11.9 99 594-695 257-357 (397)
202 PF07079 DUF1347: Protein of u 97.5 0.1 2.3E-06 50.6 45.7 43 211-253 132-178 (549)
203 TIGR00756 PPR pentatricopeptid 97.5 0.00027 5.9E-09 42.4 4.6 30 245-274 3-32 (35)
204 PRK15331 chaperone protein Sic 97.4 0.0048 1E-07 51.3 12.5 99 66-166 36-134 (165)
205 PF10037 MRP-S27: Mitochondria 97.4 0.0033 7.2E-08 62.1 13.4 121 135-255 64-186 (429)
206 PF13812 PPR_3: Pentatricopept 97.4 0.00036 7.7E-09 41.5 4.3 28 175-202 4-31 (34)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.4E-08 48.2 6.7 57 75-132 3-59 (73)
208 KOG1538 Uncharacterized conser 97.3 0.13 2.8E-06 52.2 22.3 55 524-587 747-801 (1081)
209 PF13281 DUF4071: Domain of un 97.2 0.12 2.5E-06 50.4 21.6 30 628-657 304-333 (374)
210 COG4105 ComL DNA uptake lipopr 97.2 0.12 2.5E-06 46.7 19.9 83 66-148 33-117 (254)
211 COG4105 ComL DNA uptake lipopr 97.2 0.15 3.2E-06 46.1 20.7 57 392-448 44-100 (254)
212 COG1729 Uncharacterized protei 97.2 0.01 2.2E-07 53.9 13.0 101 561-665 144-249 (262)
213 KOG2796 Uncharacterized conser 97.2 0.16 3.4E-06 45.6 22.6 58 282-339 182-239 (366)
214 KOG0543 FKBP-type peptidyl-pro 97.2 0.0088 1.9E-07 57.2 13.0 129 70-200 211-354 (397)
215 KOG2610 Uncharacterized conser 97.2 0.016 3.4E-07 53.5 14.0 120 76-197 112-234 (491)
216 PF10037 MRP-S27: Mitochondria 97.1 0.013 2.8E-07 58.1 14.4 122 380-501 64-185 (429)
217 PRK11906 transcriptional regul 97.1 0.036 7.7E-07 54.6 16.9 117 574-694 319-437 (458)
218 PF13424 TPR_12: Tetratricopep 97.1 0.0011 2.5E-08 48.9 5.5 63 595-657 6-74 (78)
219 COG1729 Uncharacterized protei 97.1 0.012 2.6E-07 53.4 12.7 90 77-166 151-244 (262)
220 PF03704 BTAD: Bacterial trans 97.1 0.017 3.7E-07 49.0 13.4 72 596-668 64-140 (146)
221 PF13281 DUF4071: Domain of un 97.1 0.11 2.5E-06 50.4 20.0 168 102-271 141-334 (374)
222 PRK11906 transcriptional regul 97.1 0.049 1.1E-06 53.7 17.7 117 47-166 273-401 (458)
223 KOG2114 Vacuolar assembly/sort 97.0 0.58 1.3E-05 49.4 25.7 186 27-233 331-516 (933)
224 COG4785 NlpI Lipoprotein NlpI, 97.0 0.096 2.1E-06 45.4 16.3 189 74-272 72-267 (297)
225 PF13512 TPR_18: Tetratricopep 97.0 0.023 4.9E-07 46.3 12.0 69 66-134 9-79 (142)
226 PF13424 TPR_12: Tetratricopep 97.0 0.0018 4E-08 47.7 5.4 62 561-622 7-74 (78)
227 PF08579 RPM2: Mitochondrial r 97.0 0.013 2.9E-07 44.8 9.7 77 143-219 31-116 (120)
228 PF03704 BTAD: Bacterial trans 96.9 0.071 1.5E-06 45.1 15.7 119 74-210 13-139 (146)
229 KOG1941 Acetylcholine receptor 96.9 0.15 3.2E-06 48.0 18.0 229 147-375 16-274 (518)
230 PF01535 PPR: PPR repeat; Int 96.9 0.0015 3.2E-08 37.7 3.6 25 175-199 3-27 (31)
231 PF08579 RPM2: Mitochondrial r 96.9 0.011 2.4E-07 45.3 8.6 72 252-323 35-115 (120)
232 PF01535 PPR: PPR repeat; Int 96.9 0.0015 3.4E-08 37.6 3.5 28 209-236 2-29 (31)
233 COG3118 Thioredoxin domain-con 96.9 0.17 3.8E-06 46.5 17.8 145 74-221 141-286 (304)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.029 6.4E-07 55.1 13.7 67 64-131 72-141 (453)
235 KOG2114 Vacuolar assembly/sort 96.8 0.87 1.9E-05 48.2 28.7 174 142-338 339-516 (933)
236 KOG4555 TPR repeat-containing 96.8 0.025 5.5E-07 44.3 10.4 93 74-167 50-145 (175)
237 KOG2396 HAT (Half-A-TPR) repea 96.8 0.61 1.3E-05 46.3 38.6 104 556-663 456-563 (568)
238 PF10300 DUF3808: Protein of u 96.8 0.095 2.1E-06 54.0 17.7 83 539-623 248-334 (468)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0082 1.8E-07 58.8 9.1 98 557-660 73-176 (453)
240 KOG4555 TPR repeat-containing 96.7 0.059 1.3E-06 42.4 11.6 96 36-132 47-145 (175)
241 KOG1585 Protein required for f 96.6 0.16 3.6E-06 45.0 14.9 21 461-481 38-58 (308)
242 COG3118 Thioredoxin domain-con 96.6 0.29 6.2E-06 45.2 17.0 143 146-291 143-286 (304)
243 COG0457 NrfG FOG: TPR repeat [ 96.6 0.67 1.4E-05 43.2 29.7 226 433-663 37-268 (291)
244 PF13428 TPR_14: Tetratricopep 96.5 0.0062 1.4E-07 38.6 4.7 41 68-109 2-42 (44)
245 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.8E-05 46.4 28.8 86 213-301 443-531 (829)
246 COG4785 NlpI Lipoprotein NlpI, 96.5 0.48 1E-05 41.3 17.2 186 109-307 72-267 (297)
247 PF06239 ECSIT: Evolutionarily 96.5 0.058 1.3E-06 47.2 11.8 82 171-252 46-148 (228)
248 PF10300 DUF3808: Protein of u 96.5 1.3 2.8E-05 45.9 24.4 118 468-587 247-375 (468)
249 KOG1538 Uncharacterized conser 96.5 0.24 5.1E-06 50.4 17.1 38 297-337 620-657 (1081)
250 PF10345 Cohesin_load: Cohesin 96.4 1.8 3.9E-05 46.8 36.9 184 49-233 38-251 (608)
251 COG0457 NrfG FOG: TPR repeat [ 96.4 0.84 1.8E-05 42.5 28.2 187 81-270 37-230 (291)
252 PF06239 ECSIT: Evolutionarily 96.3 0.098 2.1E-06 45.8 12.0 86 136-221 46-152 (228)
253 KOG1586 Protein required for f 96.3 0.74 1.6E-05 40.8 18.0 97 526-623 76-183 (288)
254 KOG2610 Uncharacterized conser 96.3 0.19 4.2E-06 46.7 14.1 154 465-621 114-274 (491)
255 KOG1550 Extracellular protein 96.2 2.1 4.5E-05 45.6 28.6 179 48-237 228-427 (552)
256 PF04840 Vps16_C: Vps16, C-ter 96.2 1.3 2.7E-05 43.0 30.2 110 526-655 179-288 (319)
257 PF13428 TPR_14: Tetratricopep 96.2 0.014 3.1E-07 36.9 5.0 26 598-623 5-30 (44)
258 KOG4234 TPR repeat-containing 96.2 0.1 2.2E-06 44.6 11.1 103 566-672 102-209 (271)
259 PF04184 ST7: ST7 protein; In 96.2 0.42 9.1E-06 47.5 16.8 58 564-622 264-323 (539)
260 COG4649 Uncharacterized protei 96.2 0.37 7.9E-06 40.4 13.8 54 147-200 142-195 (221)
261 KOG1585 Protein required for f 96.1 0.91 2E-05 40.5 18.2 207 421-654 33-252 (308)
262 PF04184 ST7: ST7 protein; In 96.1 0.33 7.1E-06 48.2 15.7 143 501-658 180-324 (539)
263 PF13431 TPR_17: Tetratricopep 96.0 0.0072 1.6E-07 35.5 2.8 32 55-87 2-33 (34)
264 PF08631 SPO22: Meiosis protei 95.7 2 4.3E-05 41.1 25.0 122 44-166 5-150 (278)
265 KOG1550 Extracellular protein 95.5 4.2 9E-05 43.3 29.5 143 223-377 228-394 (552)
266 PF04053 Coatomer_WDAD: Coatom 95.5 0.4 8.6E-06 48.7 14.2 56 206-270 346-401 (443)
267 PF08631 SPO22: Meiosis protei 95.5 2.5 5.3E-05 40.4 26.1 62 456-518 86-150 (278)
268 KOG2280 Vacuolar assembly/sort 95.4 4.3 9.3E-05 42.8 30.0 101 165-267 425-532 (829)
269 PF09205 DUF1955: Domain of un 95.4 1.1 2.4E-05 35.7 13.4 140 500-661 13-152 (161)
270 PF00515 TPR_1: Tetratricopept 95.3 0.043 9.3E-07 32.3 4.2 32 630-663 2-33 (34)
271 KOG4234 TPR repeat-containing 95.2 0.26 5.7E-06 42.3 9.9 95 71-167 99-198 (271)
272 PF13512 TPR_18: Tetratricopep 95.2 0.8 1.7E-05 37.5 12.3 60 389-448 17-76 (142)
273 PF07719 TPR_2: Tetratricopept 95.2 0.033 7.1E-07 32.8 3.5 32 630-663 2-33 (34)
274 KOG2471 TPR repeat-containing 95.1 0.58 1.3E-05 46.1 13.1 41 254-294 29-69 (696)
275 PF10345 Cohesin_load: Cohesin 95.1 6.3 0.00014 42.7 38.6 60 597-657 538-605 (608)
276 KOG4648 Uncharacterized conser 95.0 0.12 2.7E-06 48.1 8.1 95 567-665 105-199 (536)
277 PF09205 DUF1955: Domain of un 95.0 1.5 3.2E-05 35.0 15.1 140 464-625 12-151 (161)
278 PF06552 TOM20_plant: Plant sp 95.0 0.19 4.1E-06 42.6 8.4 27 645-673 96-122 (186)
279 PF13431 TPR_17: Tetratricopep 94.9 0.03 6.5E-07 32.9 2.7 32 617-649 2-33 (34)
280 KOG0890 Protein kinase of the 94.9 13 0.00028 45.3 35.2 152 72-231 1388-1542(2382)
281 PF04053 Coatomer_WDAD: Coatom 94.8 0.59 1.3E-05 47.5 13.2 130 105-267 298-427 (443)
282 COG3947 Response regulator con 94.7 3.5 7.6E-05 38.1 16.9 70 597-667 282-356 (361)
283 COG4649 Uncharacterized protei 94.7 2.3 5E-05 35.8 16.1 123 112-236 68-196 (221)
284 PF13176 TPR_7: Tetratricopept 94.6 0.075 1.6E-06 31.7 4.0 26 69-94 1-26 (36)
285 KOG4648 Uncharacterized conser 94.5 0.25 5.4E-06 46.1 8.7 98 70-171 100-197 (536)
286 PF12921 ATP13: Mitochondrial 94.5 0.83 1.8E-05 37.0 10.8 56 624-679 47-103 (126)
287 COG2909 MalT ATP-dependent tra 94.4 9.1 0.0002 41.5 26.5 228 427-654 423-684 (894)
288 KOG2062 26S proteasome regulat 94.3 8.3 0.00018 40.7 39.1 121 533-657 510-634 (929)
289 KOG1920 IkappaB kinase complex 94.1 12 0.00026 42.0 23.7 128 468-622 894-1027(1265)
290 smart00299 CLH Clathrin heavy 94.1 3 6.6E-05 34.8 14.4 35 148-183 18-52 (140)
291 PF07719 TPR_2: Tetratricopept 94.1 0.14 3.1E-06 29.9 4.4 30 68-97 2-31 (34)
292 PF13176 TPR_7: Tetratricopept 93.8 0.15 3.2E-06 30.5 4.1 22 598-619 3-24 (36)
293 PF00515 TPR_1: Tetratricopept 93.6 0.19 4.1E-06 29.5 4.3 30 68-97 2-31 (34)
294 KOG4642 Chaperone-dependent E3 93.5 1.7 3.6E-05 38.8 11.4 83 45-129 23-105 (284)
295 KOG2471 TPR repeat-containing 93.5 6.7 0.00015 39.1 16.5 110 566-676 247-381 (696)
296 COG2976 Uncharacterized protei 93.4 4.8 0.0001 34.9 14.4 93 565-659 95-189 (207)
297 smart00299 CLH Clathrin heavy 93.3 4.2 9.1E-05 33.9 15.3 125 106-253 11-136 (140)
298 PF12921 ATP13: Mitochondrial 93.3 1.8 3.9E-05 35.1 10.7 99 524-642 2-101 (126)
299 PRK15180 Vi polysaccharide bio 93.2 9.9 0.00022 37.8 27.7 121 44-167 301-421 (831)
300 PF10602 RPN7: 26S proteasome 93.1 1.8 3.8E-05 37.8 11.3 62 561-622 38-101 (177)
301 PF08424 NRDE-2: NRDE-2, neces 93.1 6 0.00013 38.7 16.1 109 53-164 6-129 (321)
302 COG2976 Uncharacterized protei 93.0 5.6 0.00012 34.6 13.7 91 391-483 98-188 (207)
303 KOG2396 HAT (Half-A-TPR) repea 93.0 11 0.00024 37.9 42.2 93 528-622 464-558 (568)
304 PF02259 FAT: FAT domain; Int 93.0 11 0.00023 37.7 22.8 106 559-666 146-293 (352)
305 KOG3364 Membrane protein invol 93.0 2.6 5.7E-05 33.9 10.6 81 591-673 29-113 (149)
306 PF02259 FAT: FAT domain; Int 92.9 11 0.00024 37.7 22.3 65 311-375 145-212 (352)
307 PF13181 TPR_8: Tetratricopept 92.9 0.17 3.6E-06 29.7 3.3 27 631-657 3-29 (34)
308 KOG1920 IkappaB kinase complex 92.7 21 0.00045 40.3 25.4 128 502-657 893-1027(1265)
309 PRK09687 putative lyase; Provi 92.6 9.6 0.00021 36.3 27.8 232 418-674 36-277 (280)
310 COG3629 DnrI DNA-binding trans 92.6 1.4 3E-05 41.2 10.3 76 597-673 156-236 (280)
311 PF09613 HrpB1_HrpK: Bacterial 92.5 4.7 0.0001 33.9 12.1 91 564-658 15-106 (160)
312 PF04840 Vps16_C: Vps16, C-ter 92.4 11 0.00025 36.5 33.0 23 452-474 206-228 (319)
313 PF10602 RPN7: 26S proteasome 92.2 1.7 3.6E-05 38.0 9.9 64 525-588 37-102 (177)
314 PF07035 Mic1: Colon cancer-as 92.0 7.1 0.00015 33.4 15.1 132 193-338 15-146 (167)
315 PF09613 HrpB1_HrpK: Bacterial 91.9 7 0.00015 32.9 13.3 56 110-166 18-73 (160)
316 COG3629 DnrI DNA-binding trans 91.8 3.1 6.8E-05 38.9 11.5 78 103-181 154-236 (280)
317 PF06552 TOM20_plant: Plant sp 91.6 1.9 4.2E-05 36.8 9.0 74 471-553 52-136 (186)
318 PF13170 DUF4003: Protein of u 91.5 13 0.00029 35.6 18.3 129 121-251 81-226 (297)
319 KOG4642 Chaperone-dependent E3 91.5 3.5 7.5E-05 36.9 10.7 108 73-182 16-127 (284)
320 PF14853 Fis1_TPR_C: Fis1 C-te 91.5 0.87 1.9E-05 30.0 5.6 42 631-674 3-44 (53)
321 KOG1586 Protein required for f 91.1 11 0.00024 33.8 21.2 26 213-238 160-185 (288)
322 PF08424 NRDE-2: NRDE-2, neces 91.1 13 0.00029 36.3 16.0 107 90-199 8-129 (321)
323 COG2909 MalT ATP-dependent tra 91.1 27 0.00058 38.2 29.3 226 322-549 425-684 (894)
324 PF13174 TPR_6: Tetratricopept 90.9 0.43 9.3E-06 27.5 3.5 29 69-97 2-30 (33)
325 KOG1308 Hsp70-interacting prot 90.8 0.18 3.8E-06 47.3 2.5 100 74-175 121-220 (377)
326 COG0790 FOG: TPR repeat, SEL1 90.7 17 0.00036 35.1 24.3 148 504-661 92-269 (292)
327 PRK11619 lytic murein transgly 90.6 29 0.00063 37.7 35.8 253 220-490 254-512 (644)
328 PF13170 DUF4003: Protein of u 90.5 17 0.00036 34.9 18.0 48 190-237 80-133 (297)
329 KOG0530 Protein farnesyltransf 90.4 14 0.0003 33.8 19.9 209 5-219 16-233 (318)
330 PF11207 DUF2989: Protein of u 90.0 12 0.00026 32.9 12.7 73 119-192 123-198 (203)
331 PF13374 TPR_10: Tetratricopep 90.0 0.75 1.6E-05 28.4 4.3 30 67-96 2-31 (42)
332 PF13174 TPR_6: Tetratricopept 89.8 0.32 7E-06 28.1 2.3 26 632-657 3-28 (33)
333 PF13181 TPR_8: Tetratricopept 89.7 0.91 2E-05 26.4 4.3 29 68-96 2-30 (34)
334 TIGR03504 FimV_Cterm FimV C-te 89.2 0.66 1.4E-05 29.1 3.4 23 635-657 5-27 (44)
335 TIGR02561 HrpB1_HrpK type III 89.1 7.5 0.00016 32.1 10.1 75 567-644 18-93 (153)
336 PF09986 DUF2225: Uncharacteri 88.4 9.1 0.0002 34.6 11.5 64 596-659 120-195 (214)
337 PRK11619 lytic murein transgly 88.3 42 0.00092 36.5 38.8 56 353-409 318-373 (644)
338 KOG0128 RNA-binding protein SA 88.0 44 0.00094 36.3 36.0 51 572-623 475-526 (881)
339 PF11207 DUF2989: Protein of u 88.0 4.9 0.00011 35.2 9.0 73 365-438 124-197 (203)
340 KOG0276 Vesicle coat complex C 88.0 6 0.00013 40.6 10.7 99 218-337 648-746 (794)
341 COG1747 Uncharacterized N-term 87.9 34 0.00073 34.8 25.6 163 419-588 66-234 (711)
342 PF09986 DUF2225: Uncharacteri 87.8 9.4 0.0002 34.5 11.2 87 45-131 90-194 (214)
343 COG0790 FOG: TPR repeat, SEL1 87.8 27 0.00059 33.7 24.6 80 541-627 172-270 (292)
344 KOG4507 Uncharacterized conser 87.8 2.7 5.8E-05 42.8 8.2 101 522-623 605-705 (886)
345 PF13374 TPR_10: Tetratricopep 87.5 1.4 3E-05 27.1 4.3 28 630-657 3-30 (42)
346 KOG1308 Hsp70-interacting prot 87.2 0.4 8.6E-06 45.1 2.2 116 536-656 126-242 (377)
347 PRK15180 Vi polysaccharide bio 87.2 35 0.00076 34.3 32.8 125 112-239 299-423 (831)
348 KOG4507 Uncharacterized conser 87.1 1.8 3.9E-05 44.0 6.5 122 541-666 590-711 (886)
349 KOG0376 Serine-threonine phosp 86.9 1.5 3.3E-05 43.5 6.0 102 568-674 13-115 (476)
350 KOG3941 Intermediate in Toll s 86.3 4.7 0.0001 37.0 8.2 87 222-327 87-173 (406)
351 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 6.9 0.00015 29.4 7.5 45 612-656 25-69 (103)
352 KOG3941 Intermediate in Toll s 85.8 8.4 0.00018 35.5 9.5 104 276-398 66-174 (406)
353 KOG1464 COP9 signalosome, subu 85.7 29 0.00062 31.9 18.1 192 431-622 39-259 (440)
354 KOG2062 26S proteasome regulat 85.6 55 0.0012 35.1 34.3 125 565-692 507-634 (929)
355 KOG0276 Vesicle coat complex C 85.1 24 0.00053 36.5 13.1 45 114-164 649-693 (794)
356 KOG0545 Aryl-hydrocarbon recep 84.9 17 0.00037 32.9 10.7 99 66-165 177-292 (329)
357 PF07721 TPR_4: Tetratricopept 84.6 1.6 3.4E-05 23.6 2.9 22 70-91 4-25 (26)
358 PF07163 Pex26: Pex26 protein; 84.5 35 0.00076 31.8 13.6 122 74-195 42-181 (309)
359 PF07035 Mic1: Colon cancer-as 84.2 26 0.00056 30.1 15.3 134 158-305 15-148 (167)
360 PF04097 Nic96: Nup93/Nic96; 83.7 71 0.0015 34.7 22.9 63 138-201 112-181 (613)
361 TIGR02561 HrpB1_HrpK type III 83.6 24 0.00053 29.3 11.9 50 220-270 23-72 (153)
362 COG4455 ImpE Protein of avirul 83.5 9.4 0.0002 33.8 8.4 58 529-587 6-63 (273)
363 PF07721 TPR_4: Tetratricopept 83.3 1.5 3.3E-05 23.7 2.5 21 633-653 5-25 (26)
364 PRK09687 putative lyase; Provi 82.9 45 0.00098 31.8 29.7 201 418-639 67-277 (280)
365 COG1747 Uncharacterized N-term 82.9 59 0.0013 33.2 25.2 180 488-675 65-250 (711)
366 KOG2063 Vacuolar assembly/sort 82.6 88 0.0019 35.0 25.4 65 30-96 307-375 (877)
367 PF02284 COX5A: Cytochrome c o 82.3 7.9 0.00017 29.5 6.5 45 613-657 29-73 (108)
368 COG3947 Response regulator con 82.3 44 0.00096 31.3 15.3 60 561-621 281-340 (361)
369 PF04190 DUF410: Protein of un 81.8 47 0.001 31.3 14.2 26 627-652 88-113 (260)
370 smart00028 TPR Tetratricopepti 81.4 2.3 4.9E-05 23.7 3.1 26 632-657 4-29 (34)
371 PRK12798 chemotaxis protein; R 81.2 62 0.0013 32.3 22.3 156 325-483 125-286 (421)
372 PF14561 TPR_20: Tetratricopep 79.7 24 0.00051 26.6 8.7 45 52-97 8-52 (90)
373 KOG0376 Serine-threonine phosp 79.6 4.9 0.00011 40.1 6.2 93 35-131 9-101 (476)
374 smart00028 TPR Tetratricopepti 79.5 3.7 8E-05 22.7 3.6 28 69-96 3-30 (34)
375 PRK10941 hypothetical protein; 79.5 26 0.00057 33.0 10.7 62 71-133 185-246 (269)
376 KOG1464 COP9 signalosome, subu 79.4 52 0.0011 30.3 21.2 93 493-585 149-257 (440)
377 PF02284 COX5A: Cytochrome c o 79.3 26 0.00057 26.8 8.8 47 190-236 28-74 (108)
378 COG4455 ImpE Protein of avirul 78.8 17 0.00036 32.3 8.3 123 562-695 4-135 (273)
379 PF00244 14-3-3: 14-3-3 protei 78.5 30 0.00064 32.0 10.6 48 610-657 142-197 (236)
380 KOG0890 Protein kinase of the 78.1 1.9E+02 0.0042 36.2 41.8 315 44-376 1395-1731(2382)
381 PF04910 Tcf25: Transcriptiona 78.0 78 0.0017 31.6 19.3 127 134-270 37-167 (360)
382 KOG0551 Hsp90 co-chaperone CNS 78.0 34 0.00073 32.7 10.5 92 527-620 84-179 (390)
383 PF14853 Fis1_TPR_C: Fis1 C-te 77.0 9.2 0.0002 25.2 5.0 28 70-97 4-31 (53)
384 PF14561 TPR_20: Tetratricopep 76.8 30 0.00064 26.1 8.5 33 99-131 19-51 (90)
385 KOG0686 COP9 signalosome, subu 76.7 39 0.00084 33.3 10.8 63 526-588 152-216 (466)
386 PRK10941 hypothetical protein; 76.7 23 0.00051 33.3 9.5 59 598-657 185-243 (269)
387 KOG3364 Membrane protein invol 76.7 32 0.00069 28.0 8.6 24 564-587 76-99 (149)
388 KOG0551 Hsp90 co-chaperone CNS 76.3 10 0.00022 36.0 6.8 101 65-166 79-182 (390)
389 KOG2034 Vacuolar sorting prote 76.2 1.3E+02 0.0028 33.3 28.3 87 74-173 365-451 (911)
390 KOG0545 Aryl-hydrocarbon recep 75.7 64 0.0014 29.4 12.4 65 596-663 232-296 (329)
391 TIGR03504 FimV_Cterm FimV C-te 75.6 8.5 0.00018 24.2 4.3 22 283-304 5-26 (44)
392 cd00923 Cyt_c_Oxidase_Va Cytoc 74.9 34 0.00074 25.9 9.3 63 32-94 7-69 (103)
393 PF13929 mRNA_stabil: mRNA sta 73.0 81 0.0018 29.8 11.6 136 45-182 141-288 (292)
394 KOG2066 Vacuolar assembly/sort 72.9 1.5E+02 0.0032 32.3 27.9 102 249-359 363-467 (846)
395 KOG2300 Uncharacterized conser 72.4 1.2E+02 0.0025 31.0 39.2 122 72-195 12-150 (629)
396 KOG4570 Uncharacterized conser 71.9 33 0.00072 32.4 8.8 101 486-588 61-164 (418)
397 COG5187 RPN7 26S proteasome re 70.9 93 0.002 29.2 11.9 97 102-200 115-220 (412)
398 PF04097 Nic96: Nup93/Nic96; 70.1 1.7E+02 0.0037 31.9 19.6 45 280-325 114-158 (613)
399 COG4259 Uncharacterized protei 69.3 29 0.00063 26.2 6.4 57 613-671 56-112 (121)
400 PF12862 Apc5: Anaphase-promot 69.1 24 0.00052 26.8 6.5 25 72-96 46-70 (94)
401 PF00637 Clathrin: Region in C 68.8 2.7 5.8E-05 35.3 1.4 49 113-161 18-66 (143)
402 KOG2908 26S proteasome regulat 68.7 79 0.0017 30.4 10.6 82 532-613 83-176 (380)
403 PF00244 14-3-3: 14-3-3 protei 68.3 84 0.0018 29.1 11.0 49 575-623 142-198 (236)
404 PF00637 Clathrin: Region in C 68.1 2.3 4.9E-05 35.7 0.8 49 217-265 17-65 (143)
405 PF04190 DUF410: Protein of un 68.0 1.1E+02 0.0024 28.9 16.8 157 46-236 4-170 (260)
406 KOG4077 Cytochrome c oxidase, 68.0 42 0.00092 26.8 7.4 40 618-657 73-112 (149)
407 PF12862 Apc5: Anaphase-promot 67.7 31 0.00067 26.2 6.9 53 605-657 9-69 (94)
408 KOG4521 Nuclear pore complex, 66.5 2.5E+02 0.0053 32.4 15.1 56 139-195 985-1044(1480)
409 KOG2422 Uncharacterized conser 66.1 1.8E+02 0.0038 30.5 20.0 50 45-94 251-311 (665)
410 PF13934 ELYS: Nuclear pore co 65.2 77 0.0017 29.1 10.1 121 49-183 63-183 (226)
411 KOG0128 RNA-binding protein SA 65.1 2.2E+02 0.0048 31.3 35.2 113 50-166 97-219 (881)
412 PF10579 Rapsyn_N: Rapsyn N-te 64.9 20 0.00043 25.9 4.7 17 599-615 48-64 (80)
413 KOG0991 Replication factor C, 63.7 1.2E+02 0.0025 27.7 13.0 75 589-666 189-275 (333)
414 PRK12798 chemotaxis protein; R 63.6 1.7E+02 0.0037 29.4 21.8 193 359-555 124-326 (421)
415 KOG2300 Uncharacterized conser 62.7 1.9E+02 0.0041 29.7 41.1 152 430-585 334-511 (629)
416 KOG2422 Uncharacterized conser 62.7 2.1E+02 0.0044 30.1 18.2 50 79-128 250-310 (665)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 84 0.0018 25.6 11.8 44 612-655 81-125 (126)
418 KOG1839 Uncharacterized protei 62.2 1.7E+02 0.0037 34.1 13.5 49 45-93 945-999 (1236)
419 COG4976 Predicted methyltransf 61.9 14 0.00031 33.0 4.4 56 568-624 4-59 (287)
420 PF10579 Rapsyn_N: Rapsyn N-te 61.8 24 0.00053 25.5 4.7 47 536-582 18-66 (80)
421 PF11846 DUF3366: Domain of un 61.4 59 0.0013 28.9 8.6 35 626-662 141-175 (193)
422 PF07163 Pex26: Pex26 protein; 60.1 1.5E+02 0.0033 27.8 13.7 87 461-547 90-181 (309)
423 KOG0686 COP9 signalosome, subu 60.1 1.9E+02 0.0041 28.9 13.5 63 68-130 151-215 (466)
424 COG5159 RPN6 26S proteasome re 59.3 1.6E+02 0.0034 27.7 20.7 54 142-195 8-68 (421)
425 KOG0687 26S proteasome regulat 59.2 1.7E+02 0.0038 28.1 11.5 134 64-201 67-210 (393)
426 TIGR02508 type_III_yscG type I 58.4 82 0.0018 24.2 8.0 15 111-125 48-62 (115)
427 PF04910 Tcf25: Transcriptiona 58.1 2.1E+02 0.0045 28.7 22.2 127 64-200 37-167 (360)
428 KOG0687 26S proteasome regulat 57.3 1.9E+02 0.004 27.9 14.8 15 432-446 194-208 (393)
429 PF09670 Cas_Cas02710: CRISPR- 57.1 1.5E+02 0.0033 29.8 11.4 57 496-553 138-198 (379)
430 KOG2066 Vacuolar assembly/sort 56.8 3E+02 0.0066 30.2 29.5 74 112-189 366-440 (846)
431 COG5159 RPN6 26S proteasome re 56.0 1.8E+02 0.0039 27.4 20.3 95 317-411 130-235 (421)
432 PF14689 SPOB_a: Sensor_kinase 55.8 27 0.00057 24.1 4.1 23 177-199 28-50 (62)
433 KOG2063 Vacuolar assembly/sort 55.6 3.5E+02 0.0077 30.6 20.9 114 70-183 507-637 (877)
434 PF14689 SPOB_a: Sensor_kinase 55.6 29 0.00063 23.9 4.3 19 601-619 30-48 (62)
435 PF09670 Cas_Cas02710: CRISPR- 55.4 1.7E+02 0.0037 29.5 11.5 57 531-588 138-198 (379)
436 PF07720 TPR_3: Tetratricopept 55.3 36 0.00079 20.3 4.1 20 632-651 4-23 (36)
437 KOG3824 Huntingtin interacting 53.9 31 0.00067 32.4 5.3 58 76-134 125-182 (472)
438 KOG0530 Protein farnesyltransf 53.9 1.9E+02 0.0041 27.0 17.6 120 467-589 56-177 (318)
439 PF10255 Paf67: RNA polymerase 53.6 2.6E+02 0.0055 28.4 12.0 93 72-164 80-191 (404)
440 PRK13800 putative oxidoreducta 53.4 4.1E+02 0.009 30.8 29.9 126 557-692 754-880 (897)
441 smart00777 Mad3_BUB1_I Mad3/BU 53.3 1.2E+02 0.0026 24.6 9.1 43 611-653 80-123 (125)
442 PF11817 Foie-gras_1: Foie gra 53.0 67 0.0015 30.0 7.8 58 598-655 182-244 (247)
443 KOG4077 Cytochrome c oxidase, 53.0 1E+02 0.0022 24.8 7.1 43 581-623 71-113 (149)
444 KOG4570 Uncharacterized conser 53.0 2.2E+02 0.0047 27.4 11.0 101 382-483 64-164 (418)
445 smart00386 HAT HAT (Half-A-TPR 52.9 39 0.00084 18.7 4.3 13 610-622 3-15 (33)
446 PF13934 ELYS: Nuclear pore co 52.6 1.9E+02 0.0041 26.6 12.5 96 112-218 88-183 (226)
447 KOG2581 26S proteasome regulat 52.1 2.6E+02 0.0056 28.0 14.1 14 81-94 140-153 (493)
448 PF05944 Phage_term_smal: Phag 51.1 1.3E+02 0.0029 24.7 8.0 45 56-100 37-81 (132)
449 COG4976 Predicted methyltransf 51.0 60 0.0013 29.3 6.3 52 45-97 8-59 (287)
450 KOG1839 Uncharacterized protei 49.9 1.9E+02 0.0041 33.8 11.4 50 216-265 1066-1122(1236)
451 PF11817 Foie-gras_1: Foie gra 49.3 75 0.0016 29.7 7.5 56 107-162 183-243 (247)
452 PF11846 DUF3366: Domain of un 49.0 82 0.0018 28.0 7.4 43 579-623 131-173 (193)
453 KOG3807 Predicted membrane pro 48.7 2.6E+02 0.0056 27.0 13.4 24 142-165 280-303 (556)
454 PF02184 HAT: HAT (Half-A-TPR) 48.4 45 0.00098 19.3 3.4 22 575-598 3-24 (32)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 46.3 1.6E+02 0.0035 23.9 9.0 43 507-549 81-124 (126)
456 cd00280 TRFH Telomeric Repeat 45.2 1.5E+02 0.0033 25.9 7.6 48 153-200 85-139 (200)
457 PF11663 Toxin_YhaV: Toxin wit 43.8 29 0.00064 28.1 3.2 32 148-181 106-137 (140)
458 KOG0292 Vesicle coat complex C 42.2 2.3E+02 0.0049 31.6 10.0 34 631-664 1086-1119(1202)
459 TIGR02508 type_III_yscG type I 42.1 1.6E+02 0.0035 22.7 8.4 51 568-624 48-98 (115)
460 PF10255 Paf67: RNA polymerase 41.7 59 0.0013 32.7 5.6 63 525-587 123-192 (404)
461 KOG2908 26S proteasome regulat 41.6 2.8E+02 0.006 27.0 9.5 90 565-657 81-182 (380)
462 KOG1497 COP9 signalosome, subu 41.5 3.3E+02 0.0072 26.2 16.7 56 565-620 109-170 (399)
463 KOG3824 Huntingtin interacting 41.3 81 0.0017 29.8 5.9 55 112-167 126-180 (472)
464 COG5187 RPN7 26S proteasome re 41.3 3.2E+02 0.0069 25.9 13.7 28 347-374 115-142 (412)
465 cd02680 MIT_calpain7_2 MIT: do 40.7 55 0.0012 23.6 3.9 17 641-657 18-34 (75)
466 PF12968 DUF3856: Domain of Un 40.5 1.9E+02 0.0041 23.2 10.5 84 573-657 23-128 (144)
467 KOG0292 Vesicle coat complex C 40.2 5.8E+02 0.013 28.7 23.4 130 217-376 653-782 (1202)
468 PF04781 DUF627: Protein of un 39.8 1.9E+02 0.0041 22.9 8.8 21 532-552 4-24 (111)
469 smart00101 14_3_3 14-3-3 homol 39.6 3.2E+02 0.0069 25.5 16.5 48 610-657 144-199 (244)
470 COG5191 Uncharacterized conser 38.9 94 0.002 29.5 6.0 65 523-588 106-171 (435)
471 PRK10564 maltose regulon perip 38.7 66 0.0014 30.6 5.1 43 66-108 256-298 (303)
472 COG3914 Spy Predicted O-linked 37.8 5.2E+02 0.011 27.4 12.0 54 38-92 73-126 (620)
473 PF10516 SHNi-TPR: SHNi-TPR; 37.3 77 0.0017 19.2 3.6 28 68-95 2-29 (38)
474 PF15297 CKAP2_C: Cytoskeleton 37.1 3.8E+02 0.0083 26.3 9.8 62 294-357 120-185 (353)
475 cd00280 TRFH Telomeric Repeat 37.0 2.9E+02 0.0062 24.3 8.0 21 567-587 119-139 (200)
476 COG4941 Predicted RNA polymera 36.6 4.1E+02 0.009 25.9 13.9 125 540-670 272-404 (415)
477 cd08819 CARD_MDA5_2 Caspase ac 34.3 2E+02 0.0043 21.5 7.1 63 367-437 22-84 (88)
478 smart00777 Mad3_BUB1_I Mad3/BU 33.4 2.6E+02 0.0057 22.7 9.4 44 576-619 80-124 (125)
479 COG4941 Predicted RNA polymera 33.0 4.7E+02 0.01 25.5 11.8 115 505-623 272-394 (415)
480 KOG4279 Serine/threonine prote 33.0 7E+02 0.015 27.5 18.6 126 332-462 183-328 (1226)
481 COG0735 Fur Fe2+/Zn2+ uptake r 32.8 2.1E+02 0.0045 24.0 6.8 44 283-326 26-69 (145)
482 cd08819 CARD_MDA5_2 Caspase ac 32.4 2.2E+02 0.0047 21.4 6.7 13 291-303 50-62 (88)
483 KOG2659 LisH motif-containing 32.1 4E+02 0.0086 24.4 11.2 56 566-621 71-130 (228)
484 PF07575 Nucleopor_Nup85: Nup8 32.0 6.8E+02 0.015 27.1 18.7 27 66-93 148-174 (566)
485 KOG4521 Nuclear pore complex, 31.6 9.1E+02 0.02 28.4 16.0 83 105-189 986-1071(1480)
486 PF11848 DUF3368: Domain of un 31.2 1.5E+02 0.0032 19.1 5.0 32 640-671 13-44 (48)
487 PRK10564 maltose regulon perip 31.1 1.2E+02 0.0027 28.8 5.6 26 599-624 262-287 (303)
488 PRK13800 putative oxidoreducta 30.9 9E+02 0.019 28.1 29.4 247 345-622 633-880 (897)
489 COG5191 Uncharacterized conser 30.6 1.8E+02 0.0039 27.8 6.4 81 98-180 103-184 (435)
490 cd02679 MIT_spastin MIT: domai 30.0 1.4E+02 0.0031 21.8 4.6 12 610-621 55-66 (79)
491 KOG3636 Uncharacterized conser 30.0 6E+02 0.013 25.8 11.0 36 554-589 178-213 (669)
492 PF08542 Rep_fac_C: Replicatio 29.3 2.4E+02 0.0052 20.9 6.8 17 608-624 18-34 (89)
493 PF15297 CKAP2_C: Cytoskeleton 29.1 3.9E+02 0.0085 26.2 8.5 33 421-453 142-174 (353)
494 PF10366 Vps39_1: Vacuolar sor 29.0 2.9E+02 0.0062 21.8 8.0 50 37-95 17-67 (108)
495 cd02683 MIT_1 MIT: domain cont 28.8 2.3E+02 0.005 20.6 7.3 16 641-656 18-33 (77)
496 COG4259 Uncharacterized protei 28.5 2.7E+02 0.0059 21.3 7.1 25 598-622 76-100 (121)
497 PF04090 RNA_pol_I_TF: RNA pol 28.2 3.6E+02 0.0079 24.1 7.7 60 68-127 42-101 (199)
498 PF11663 Toxin_YhaV: Toxin wit 28.0 42 0.00092 27.3 1.8 34 638-673 104-137 (140)
499 PF13929 mRNA_stabil: mRNA sta 27.6 5.5E+02 0.012 24.6 16.1 170 49-221 113-292 (292)
500 TIGR03362 VI_chp_7 type VI sec 27.4 5.8E+02 0.013 24.8 15.5 190 1-200 72-278 (301)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-72 Score=622.70 Aligned_cols=638 Identities=22% Similarity=0.325 Sum_probs=603.6
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEV 111 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (721)
+.+..+.+++. .|++++|..+|+.+...+..++..+|..++..+.+.+.++.+.+++..+.+.+..++...++.++..
T Consensus 53 ~~n~~i~~l~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 53 DSNSQLRALCS--HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 44566777776 6799999999999999877778899999999999999999999999999999888888899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEA 191 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 191 (721)
|.+.|+.+.|.++|+.+ ..++..+|+.++.+|.+.|++++|+.+|++|...|+.||..+|+.++.++...+++..+
T Consensus 131 ~~~~g~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 131 FVRFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHhCCChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999 46788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 192 LDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
.+++..+...|+.||..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|.+|...
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999864 48899999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004976 272 GISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYN 351 (721)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (721)
|+.||..+|+.++.++.+.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. .|+..+|+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 45888999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh
Q 004976 352 VLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK 431 (721)
Q Consensus 352 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (721)
.++.+|.+.|++++|+++|++|.+.|+.||..++..++.++++.|+++.|.++++.+.+ .++.++..+++.++.+|++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~--~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER--KGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 6788999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004976 432 EDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGI 511 (721)
Q Consensus 432 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (721)
.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. +..||..+|..++.+|++.|..+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999864 5888999999999999999999999999986 5889999999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 004976 512 FSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLP 591 (721)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 591 (721)
+..+.+.|..++..+++.++.+|.++|++++|.++|+.+ .||..+|+.++.+|.+.|+.++|+++|++|.+.|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 489999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 592 PDALTYSTLIHRFLRFGLLSDAKSVYQKMV-ASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTI 670 (721)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (721)
||..||+.++.+|.+.|++++|.++|+.|. ..|+.|+..+|..++.+|.+.|++++|.+++++|. +.||..+|..+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 999999999999999999999999999999 56999999999999999999999999999999985 89999999999
Q ss_pred HHHHHhcCchhhHhhHHHHHHhccCCCCc
Q 004976 671 LVCLCNISEDLDVAKLFPTFSQETSKGKS 699 (721)
Q Consensus 671 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (721)
+.+ |+.+++.+.++...+.+.+-.|.+.
T Consensus 664 l~a-c~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 664 LNA-CRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHH-HHHcCChHHHHHHHHHHHhhCCCCc
Confidence 998 5679999988887766655555444
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-69 Score=600.58 Aligned_cols=630 Identities=20% Similarity=0.288 Sum_probs=595.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004976 36 QLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQT 115 (721)
Q Consensus 36 ~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (721)
.+...|. ..+.++.|.+++..++..++.++..+++.++..|.+.|+.+.|+++|++|. +++..+|+.++..|.+.
T Consensus 91 ~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 91 ALFRLCE-WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA 165 (857)
T ss_pred HHHHHHh-hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhC
Confidence 3334444 345789999999999998877888999999999999999999999999995 57889999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 116 QKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDIL 195 (721)
Q Consensus 116 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 195 (721)
|++++|.++|+.+...|..||..+|+.++.+|...+++..+.+++..+.+.|+.|+..+++.++.+|++.|++++|..+|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004976 196 PDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISP 275 (721)
Q Consensus 196 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 275 (721)
++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++.+.|+.+.|.+++..+.+.|+.|
T Consensus 246 ~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIK 355 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (721)
|..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|..|+..+|..++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 999999999999999999999999999864 6899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCCh
Q 004976 356 GLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRL 435 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (721)
++++.|++++|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|+.+.+ ++..+|+.++.+|.+.|+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999864 5788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 436 DEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKM 515 (721)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 515 (721)
++|..+|++|.. +++||..++..++.+|.+.|+.+.+.+++..+.+.|..++..+++.++.+|++.|+.++|..+|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 5899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCh
Q 004976 516 RVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNML-QMGLPPDA 594 (721)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 594 (721)
.+|..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 579999999999999999999999999999999999999999999999999999999999999999 56999999
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 004976 595 LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC- 673 (721)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~- 673 (721)
.+|+.++.+|.+.|++++|.+++++|. +.|+..+|..++.+|..+|+.+.+....+++.+ +.|++..++.++..
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHH
Confidence 999999999999999999999999983 689999999999999999999999999999998 88987777766655
Q ss_pred HHhcCchhhHhhHHHHHHhccC
Q 004976 674 LCNISEDLDVAKLFPTFSQETS 695 (721)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~ 695 (721)
+...+++.++.+....|..+..
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCC
Confidence 5566777888888888888766
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-62 Score=529.52 Aligned_cols=545 Identities=21% Similarity=0.297 Sum_probs=338.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004976 101 SFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF-VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIV 179 (721)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 179 (721)
+...+..++..+.+.|++++|.++|+.|.+.+. +++...+..++..|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 344455555555555666666666666555543 23444445555555555666666655555542 5555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChh
Q 004976 180 NGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFD 259 (721)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 259 (721)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 66666666666666666665555556666666666666666666666666666665555556666666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004976 260 KGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMME--RGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW 337 (721)
Q Consensus 260 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 337 (721)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666665555556666666666666666666666666666544 34555555666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC
Q 004976 338 MVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL 417 (721)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 417 (721)
|.+.|.+|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+ .++.|
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k--~G~~p 682 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK--QGIKL 682 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCC
Confidence 6655555555666666666666666666666666666555556655666666666666666666666666555 44555
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMID 497 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 497 (721)
+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55566666666666666666666666665555555666666666666666666666666666655555566666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQS 577 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 577 (721)
+|++.|++++|.+++++|.+.|+.||..+|+.++..+. +.+++|..+.+.+...+ .+......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------ccccccccchHHH
Confidence 66666666666666666665555556555555554332 12334433333222210 0001111234578
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 578 ARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 578 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
|..+|++|.+.|+.||..||..++.+++..+....+..+++.+...+..|+..+|+.++.++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999988777789999999999988432 3689999999999
Q ss_pred cCCCCCHH
Q 004976 658 KGVHLDQE 665 (721)
Q Consensus 658 ~~~~p~~~ 665 (721)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-62 Score=525.68 Aligned_cols=548 Identities=20% Similarity=0.268 Sum_probs=503.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 004976 63 RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI-FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFN 141 (721)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 141 (721)
..++...|..+...+.+.|++++|+++|++|.+.++ +++...+..++..|.+.|..++|..++..+. .|+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHH
Confidence 345778888999999999999999999999999875 4566667788999999999999999999884 48999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDG 221 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 221 (721)
.++.+|++.|+++.|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004976 222 RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE--KGISPNVVTYNSLMHCLCKIGQWKEAIAM 299 (721)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 299 (721)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 57899999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 004976 300 LDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMM 379 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 379 (721)
|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 004976 380 PDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNI 459 (721)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (721)
|+..+|+.++.+|++.|++++|.++|+.+.. .+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|..
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~--~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKS--IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999987 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004976 460 LIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESS 539 (721)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 539 (721)
++.+|.+.|+++.|.+++++|.+.|+.||..+|+.++..|. +++++|..+.+.+...+. +......+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKW 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccch
Confidence 99999999999999999999999999999999999986654 246666655544432210 011112233
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 004976 540 LEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQK 619 (721)
Q Consensus 540 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (721)
.++|..+|++|.+.|+.||..+|+.++.++...+....+..+++.+...+..|+..+|+.+++++... .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 46799999999999999999999999988888899999999999998888889999999999987432 4689999999
Q ss_pred HHHCCCCCCHH
Q 004976 620 MVASGHKPNAC 630 (721)
Q Consensus 620 ~~~~~~~~~~~ 630 (721)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999988764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-55 Score=472.22 Aligned_cols=512 Identities=19% Similarity=0.323 Sum_probs=391.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKSNG-VSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLM 214 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 214 (721)
+...|+.++..|.+.|++++|+.+|+.|...+ +.|+..+|+.++.++.+.++++.+.+++..|...|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33456677777777777777777777776543 56677777777777777777777777777777777777777777777
Q ss_pred HHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 004976 215 DGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWK 294 (721)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 294 (721)
.+|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 777777777777777777753 4777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 295 EAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMI 374 (721)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 374 (721)
.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777764 3467778888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 004976 375 EKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNL 454 (721)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 454 (721)
+.|+.||..+|+.++.+|++.|++++|.+++..+.+ .++.++..+++.++.+|++.|++++|.++|++|. .||.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~--~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR--TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH--hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 777888888888888888888888888888888877 5567788888888888888888888888888775 3577
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHH
Q 004976 455 VTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRV-SGNDPTLFDYNALMAS 533 (721)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 533 (721)
.+|+.++.+|.+.|+.++|+++|++|.+.|+.||..+|..++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888875 5788888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 004976 534 LCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDA 613 (721)
Q Consensus 534 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 613 (721)
|.+.|++++|.++++++ ++.|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|.+.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHH
Confidence 88888888888887765 457888889999999988999999998888887643 33467888888999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH---HH----cC----CChhHHHHHHHHHHHcCCCCCHH
Q 004976 614 KSVYQKMVASGHKPN-ACVYDSLLKG---FS----SQ----GETEEVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 614 ~~~~~~~~~~~~~~~-~~~~~~l~~~---~~----~~----g~~~~A~~~~~~~~~~~~~p~~~ 665 (721)
.++++.|.+.|+... ..+|..+... +. .+ .-++...++..+|.+.|+.||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999988876432 2223211100 00 01 11345567778888889999754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-55 Score=472.54 Aligned_cols=476 Identities=19% Similarity=0.295 Sum_probs=453.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHH
Q 004976 169 SPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG-CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSA 247 (721)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 247 (721)
..+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..+.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466799999999999999999999999998764 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004976 248 LISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGR 327 (721)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (721)
++.+|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..++..++.++...|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999996 479999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004976 328 ATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNL 407 (721)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 407 (721)
.+.+.+++..+.+.|..++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999854 5899999999999999999999999999
Q ss_pred HHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004976 408 VLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVP 487 (721)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 487 (721)
|.. .++.|+..+|+.++.+|++.|++++|.+++..|.+.|++|+..+++.++.+|.+.|++++|.++|++|.+ |
T Consensus 316 M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 316 MRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHH--cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 987 6788999999999999999999999999999999999999999999999999999999999999999864 6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRN-ANCEPDVVSFNTMI 566 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~ 566 (721)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999986 68999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChh
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETE 646 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 646 (721)
.+|.+.|++++|.++++++ ++.|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|.+.|+++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHH
Confidence 9999999999999999876 478999999999999999999999999999998764 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 004976 647 EVFDLIHEMADKGVHL 662 (721)
Q Consensus 647 ~A~~~~~~~~~~~~~p 662 (721)
+|.+++++|.+.|+.+
T Consensus 546 ~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 546 EAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 9999999999998754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-41 Score=389.03 Aligned_cols=624 Identities=14% Similarity=0.100 Sum_probs=313.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
.|++++|+..|++++..++. ....+..++..+...|++++|+..|++++... |.+...+..++..+...|++++|...
T Consensus 274 ~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555544444322 22333344444445555555555555544442 33344444444455555555555555
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCC 204 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (721)
+..+...+ +.+...+..++..+.+.|++++|..+|+++.+.+ +.+...+..+..++...|++++|+..++++.... +
T Consensus 352 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 428 (899)
T TIGR02917 352 LSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-P 428 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-C
Confidence 55544432 2234444445555555555555555555554432 2233344444444555555555555555544432 1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 004976 205 PNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLM 284 (721)
Q Consensus 205 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 284 (721)
........++..+.+.|++++|..+++.+.... +.+..++..++.++...|++++|.+.|+++.+.. +.+...+..++
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 506 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLA 506 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 122233334444555555555555555554432 2244455555555555555555555555555432 12333444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 004976 285 HCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVG 364 (721)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (721)
..+...|++++|...++++...+ +.+..++..++..+.+.|+.++|...++++...+ +.+...+..++..+...|+++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 55555555555555555555432 1234445555555555555555555555555442 224444455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 365 EAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHT 444 (721)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 444 (721)
+|..+++.+.+.. +.+...+..++.++...|++++|+..|+.+++..+ .+...+..++.++...|++++|...+++
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---DSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555432 23444555555555555555555555555554322 2334455555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004976 445 MAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTL 524 (721)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 524 (721)
+.+.. +.+...+..++..+...|++++|..+++.+.+..+. +...+..++..+...|++++|...++++...+ |+.
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 55443 334455555555555555555555555555554322 44445555555555555555555555555542 233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRF 604 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (721)
.++..++.++.+.|++++|.+.++++.... +.+...+..++..|...|++++|.+.|+++.+.. +++..++..++..+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444455555555555555555555555533 2344455555555555555555555555555543 34445555555555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhHh
Q 004976 605 LRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCNISEDLDVA 684 (721)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 684 (721)
...|+ .+|+..++++.+.. +.++.++..++.++...|++++|..+++++++.+. .+..++..+...++..++..++.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHH
Confidence 55555 55555555555542 33444555555555555666666666666555221 14445555555555555555555
Q ss_pred hHHHHH
Q 004976 685 KLFPTF 690 (721)
Q Consensus 685 ~~~~~~ 690 (721)
+.+.++
T Consensus 892 ~~~~~~ 897 (899)
T TIGR02917 892 KELDKL 897 (899)
T ss_pred HHHHHH
Confidence 554444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-40 Score=378.18 Aligned_cols=632 Identities=14% Similarity=0.086 Sum_probs=315.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
.|++++|.+.+++++..++. +...+..++.++...|++++|...|++++..+ |.+...+..++..+...|++++|...
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPG-NVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555555555555544432 44445555555555555555555555555443 34444444444444444444444444
Q ss_pred HHHHHHCCCC---------------------------------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004976 125 IGLILKRGFV---------------------------------VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD 171 (721)
Q Consensus 125 ~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 171 (721)
++.+.+..+. .+...+..++..+...|++++|...|+++.+.. +.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 4444433221 112222233334444455555555555444432 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHH
Q 004976 172 NCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISG 251 (721)
Q Consensus 172 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (721)
...+..+...+.+.|++++|...+.++.... +.+...+..++..+.+.|++++|.++|+++.+..+. +...+..++..
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 406 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGIS 406 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3344445555555555555555555554432 234445555556666666666666666665554322 44445555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 004976 252 FCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKA 331 (721)
Q Consensus 252 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 331 (721)
+...|++++|...|+.+.+.+.. .......++..+.+.|++++|+.+++.+... .+.+..++..++..+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHH
Confidence 55555555555555555443211 1222333334444444444444444444432 122344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004976 332 IDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKE 411 (721)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 411 (721)
...|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|+.++|...++++...
T Consensus 485 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555554432 2234444444555555555555555555554432 123334444444444444444444444444432
Q ss_pred CCC-------------------------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 004976 412 EKY-------------------------------VQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNIL 460 (721)
Q Consensus 412 ~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 460 (721)
.+. .+.+...+..++.++...|++++|+..++++.+.. +.++..+..+
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 211 11234445555555555555555555555554433 3344444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004976 461 IGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSL 540 (721)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 540 (721)
+..+...|++++|...++++.+..+. +...+..++..+...|++++|..+++.+.+.. +.+...+..++..+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 55555555555555555555544322 34445555555555555555555555555443 22344455555555566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 541 EQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (721)
++|...|+++...+ |+..++..++.++...|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 66666666665533 333455555566666666666666666666543 444555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCchhhHhhHHHHHHhccC
Q 004976 621 VASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ-ELTSTILVCLCNISEDLDVAKLFPTFSQETS 695 (721)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 695 (721)
++.. ++++.++..++..+...|+ .+|+.+++++.+ ..|+. ..+..+...+...++..++...+.+.+....
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6553 4555666666666666666 556666666665 33433 3333444444444555555555555555444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.2e-32 Score=309.06 Aligned_cols=596 Identities=12% Similarity=0.043 Sum_probs=429.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----------------H
Q 004976 43 KPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSL----------------S 106 (721)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~ 106 (721)
...++.+.|.+.+++++..+|. ++.++..++.++.+.|+.++|.+.+++..+.+ |.+.... .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHH
Confidence 4567999999999999998866 78999999999999999999999999999986 5554432 4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004976 107 GLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAK 186 (721)
Q Consensus 107 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 186 (721)
..+..+...|++++|.+.|+.+++.+++................|+.++|+..++++.+.. +.+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 4456788999999999999999876544322222222222335699999999999999884 556778888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-h---hH-----------------HHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccch
Q 004976 187 RFKEALDILPDMEAVGCCPNL-I---TY-----------------STLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVY 245 (721)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~p~~-~---~~-----------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 245 (721)
++++|+..++++.... +.. . .| ...+..+-.......|...++........|... .
T Consensus 196 ~~~eAl~~l~~~~~~~--~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~ 272 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSP--AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-A 272 (1157)
T ss_pred CHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-H
Confidence 9999999999986642 111 0 11 111111111122344555555544332222221 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH---------
Q 004976 246 SALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTY--------- 315 (721)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~--------- 315 (721)
...+..+...|++++|+..|+++++.. +.+..++..++.++.+.|++++|+..|++..+...... ...+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 244667788899999999999988864 33677888889999999999999999998887532211 1111
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 316 ---TCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGI 392 (721)
Q Consensus 316 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (721)
......+.+.|++++|+..++++++.. +.+...+..++.++...|++++|++.|+++++.. +.+...+..+...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 223456778899999999999998873 4467778888899999999999999999988763 23455666666666
Q ss_pred hccCCHHHHHHHHHHHHhcCCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004976 393 GKFGKVDEALELFNLVLKEEKY------VQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLT 466 (721)
Q Consensus 393 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (721)
. .++.++|+.+++.+....+. .......+..++..+...|++++|+..++++++.. |.++..+..++..|..
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4 45678888887654321100 00012235566777888899999999999988875 5567778888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---------hHHHHHHHHHhc
Q 004976 467 AGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLF---------DYNALMASLCKE 537 (721)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~ 537 (721)
.|++++|...++++++..+. +...+..+...+...++.++|+..++.+......++.. .+..++..+...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999998876543 55555556666677888888888888764332222211 123456667788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 004976 538 SSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVY 617 (721)
Q Consensus 538 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (721)
|++++|+.+++. .+.+...+..++..+.+.|++++|+..|+++++.. |.+...+..++.++...|++++|++.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888761 23455667778888888889999999998888864 455678888888888889999999888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 618 QKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+++.+.. +.+...+..++.++...|++++|.+++++++.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8887653 45667777888888888999999998888876
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-31 Score=303.87 Aligned_cols=599 Identities=12% Similarity=0.040 Sum_probs=451.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hH
Q 004976 43 KPNSQYAEAVSLFQRAICSDRLPSGSVC----------------NSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFL-SL 105 (721)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~ 105 (721)
...|++++|.+.++++....|. +.... ..++..+.+.|++++|++.|++++..+ |++.. ..
T Consensus 73 l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~ 150 (1157)
T PRK11447 73 LRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAV 150 (1157)
T ss_pred HhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHH
Confidence 4578999999999999998866 44432 445668899999999999999999875 44432 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-h---hH------
Q 004976 106 SGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDN-C---SY------ 175 (721)
Q Consensus 106 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~---~~------ 175 (721)
..........|+.++|+..++.+++.. +.++.++..++..+...|++++|+..++++.+.. +.. . .|
T Consensus 151 ~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 151 EYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhc
Confidence 222223345699999999999999885 4478889999999999999999999999997642 111 0 11
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccc
Q 004976 176 -----------NTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVV 244 (721)
Q Consensus 176 -----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 244 (721)
...+..+-.......|...+.+.......|... .......+...|++++|+..|+++++..+. +..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 111111111222345555555544332122222 124466788899999999999999987554 7889
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-chH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004976 245 YSALISGFCSNGSFDKGKKLFDDMLEKGISPNV-VTY------------NSLMHCLCKIGQWKEAIAMLDAMMERGIRPD 311 (721)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (721)
+..++.++.+.|++++|+..|+++++....... ..| ......+.+.|++++|+..|+++++.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 999999999999999999999999986432111 111 223556778999999999999999863 235
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--------CCHH
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMM--------PDVV 383 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~ 383 (721)
...+..+..++...|++++|++.|+++++.. +.+...+..+...+. .++.++|+..++.+...... ....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 6778889999999999999999999999873 446677777777775 46789999888765432100 0122
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004976 384 SYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGK 463 (721)
Q Consensus 384 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (721)
.+..++..+...|++++|++.|+++++..| .+...+..++..|.+.|++++|+..++++.+.. +.++..+..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P---~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDP---GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 345667788899999999999999998654 356788899999999999999999999998764 5567777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004976 464 YLTAGIIDKALEMWKHLLELGHVPNS---------VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASL 534 (721)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (721)
+...++.++|+..++.+......++. ..+......+...|+.++|..+++. .+.+...+..++..+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 78899999999999886543222221 1233556778899999999999872 244566778899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 004976 535 CKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 535 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 614 (721)
.+.|++++|+..|++++... +.+...+..++.++...|++++|++.++.+.+.. +.+...+..++.++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999865 3356788999999999999999999999988753 345567788899999999999999
Q ss_pred HHHHHHHHCCC--CC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHH-cCCCC
Q 004976 615 SVYQKMVASGH--KP---NACVYDSLLKGFSSQGETEEVFDLIHEMAD-KGVHL 662 (721)
Q Consensus 615 ~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 662 (721)
+++++++.... +| +...+..++..+...|++++|+..|+++.. .|+.|
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 99999987521 22 235677789999999999999999999974 23443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.4e-29 Score=269.33 Aligned_cols=603 Identities=12% Similarity=0.014 Sum_probs=436.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004976 34 ETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFV 113 (721)
Q Consensus 34 ~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (721)
..++.+.+....|++++|+..|+.++..+|. +..++..++..|...|++++|+..++++++.+ |.+...+..++..
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i-- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh--
Confidence 3466777777789999999999999999987 69999999999999999999999999999975 4444444444322
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHh
Q 004976 114 QTQKPKFALGVIGLILKRGFVVNIYAFNLILKG--------FCRKGEVNKAIELFGEIKSNGVSPDNCSYNTI-VNGLCK 184 (721)
Q Consensus 114 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 184 (721)
+++.+|..+++++++..+ .+..++..++.. |.+. ++|.+.++ .......|+..+.... ..+|.+
T Consensus 122 --~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred --ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 999999999999998864 467777777766 6655 44555554 3332223345444444 889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHH
Q 004976 185 AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCK-DGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKK 263 (721)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 263 (721)
.|++++|+..+.++.+.+ +.+......+..+|.. .++ +.+..++... +..+..++..++..|.+.|+.++|.+
T Consensus 195 l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred HhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999986 3455557777788887 466 7777775542 23488889999999999999999999
Q ss_pred HHHHHHhCCCC-CCcchHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 004976 264 LFDDMLEKGIS-PNVVTYNSL------------------------------MHCLCKIGQWKEAIAMLDAMMERGIRPDV 312 (721)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~l------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (721)
+++++...... |...+|... +..+.+.++++.+.++.. +.|..
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 99997654221 333333221 333445555554443311 22332
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-C-CCCCHHHHHHHHH
Q 004976 313 VTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK-G-MMPDVVSYNTLLM 390 (721)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~ 390 (721)
.....-.......+...++.+.+..+.+. .+-+......+.-...+.|+.++|..+|+..... + ...+......++.
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 22111111222346667777777777765 2446667777777788999999999999988873 1 1223334446666
Q ss_pred HHhccCC---HHHHHH----------------------HHHHHHhcCCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHH
Q 004976 391 GIGKFGK---VDEALE----------------------LFNLVLKEEKYVQL--DVVTYNNLIQGLCKEDRLDEAVKIYH 443 (721)
Q Consensus 391 ~~~~~~~---~~~A~~----------------------~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 443 (721)
.+.+.+. ..++.. .+..+...-+..++ +...+..++.++.. +++++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 6666544 222222 22222221122234 66778888888876 88999999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004976 444 TMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT 523 (721)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 523 (721)
+.... .|+......++..+...|++++|...|+++... .|+...+..++.++.+.|++++|...++++++..+ ..
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-cc
Confidence 88776 355444445556667899999999999998665 33445566778888999999999999999988742 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 524 LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHR 603 (721)
Q Consensus 524 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (721)
...+..+.......|++++|...++++++.. |+...+..++.++.+.|++++|+..+++++... |.+...+..++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444445556699999999999999855 678889999999999999999999999999964 5566788899999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 604 FLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
+...|++++|++.++++++.. |.++..+..++.++...|++++|...++++++ +.|+.........
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g 718 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTP 718 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhh
Confidence 999999999999999999874 67888999999999999999999999999998 7786644443333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.5e-27 Score=251.40 Aligned_cols=590 Identities=11% Similarity=0.004 Sum_probs=424.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
+...+..+...|++++|+..|+++++.. |.+..++..+++.+...|++++|+...+++++.++ .|...+..+...
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i--- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHh---
Confidence 3444555556699999999999999987 77788999999999999999999999999998864 455555554332
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhc
Q 004976 150 KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG--------LCKAKRFKEALDILPDMEAVGCCPNLITYSTL-MDGLCKD 220 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~ 220 (721)
+++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.
T Consensus 122 -~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred -ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 89999999999999984 4455566666555 5555 44555444 3332223345444444 8999999
Q ss_pred CChhHHHHHHHHHhHCCCCCCccchHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004976 221 GRVDEAMGLLEEMKAKGLDADVVVYSALISGFCS-NGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAM 299 (721)
Q Consensus 221 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 299 (721)
|++++|++++.++.+.++. +......|..+|.. .++ +.+..++... +..+...+..++..+.+.|+.++|..+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998655 66667888888888 477 8888886642 234788899999999999999999999
Q ss_pred HHHHHHCCCC-CChhhHHH------------------------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004976 300 LDAMMERGIR-PDVVTYTC------------------------------LIEGLCKGGRATKAIDLLNWMVKKGEKLSVI 348 (721)
Q Consensus 300 ~~~~~~~~~~-~~~~~~~~------------------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 348 (721)
++++...... |+..++.. ++..+.+.++++.+.++. ...|...
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 343 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANE 343 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcch
Confidence 9987654222 33333222 233444555555444331 1222323
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH
Q 004976 349 TYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQG 428 (721)
Q Consensus 349 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (721)
....-.......+...++...+..+.+.. +-+......+.....+.|+.++|..+|............+......++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 22111122223467777888888777752 33666777777778899999999999999987433233345556678888
Q ss_pred HHhcCC---hhHHHHH-------------------------HHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 429 LCKEDR---LDEAVKI-------------------------YHTMAERGISG--NLVTFNILIGKYLTAGIIDKALEMWK 478 (721)
Q Consensus 429 ~~~~~~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (721)
|.+.+. ...+..+ +..+.... ++ +...+..++.++.. +++++|+..+.
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 877765 2233222 12222211 44 67788888888876 88999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004976 479 HLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPD 558 (721)
Q Consensus 479 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 558 (721)
+..... |+......++..+...|++++|...++++... +|+...+..++..+.+.|++++|...++++++.+ +++
T Consensus 501 ~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 888764 45444445556667999999999999998665 4455556777888999999999999999999865 223
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
...+..+.......|++++|+..++++++. .|+...+..++.++.+.|++++|+..+++++... |.+...+..++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444455556779999999999999984 5788899999999999999999999999999985 7788899999999
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCchhhHhhHHHHHHhccC
Q 004976 639 FSSQGETEEVFDLIHEMADKGVHLDQEL-TSTILVCLCNISEDLDVAKLFPTFSQETS 695 (721)
Q Consensus 639 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 695 (721)
+...|++++|+..++++++ ..|++.. +..+...+...++..++...+.+.+....
T Consensus 653 L~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999 7786655 44555555554444555556666665554
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-27 Score=238.56 Aligned_cols=602 Identities=15% Similarity=0.114 Sum_probs=462.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIG 126 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 126 (721)
+++.|.+.|...+..+|. +...+..-+.+.+..|+|..|+.+|..++......-+.....++.++.+.|+.+.|+..|.
T Consensus 145 ~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 479999999999998866 7777777788889999999999999999988644444556778899999999999999999
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004976 127 LILKRGFVVNIYAFNLILKGFCRK---GEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 203 (721)
++++.++ .++.++..|...-... ..+..+..++...-+.+ +.++.+.+.|.+.|.-.|++..+.++...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9999875 4566555554433333 34667888888777665 66888999999999999999999999999887531
Q ss_pred C--CCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 004976 204 C--PNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYN 281 (721)
Q Consensus 204 ~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 281 (721)
. .-...|-.++++|...|++++|..+|.+..+....-....+..+++.|.+.|+++.+...|+.+.+.. +.+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 1 11235778999999999999999999999887544335667889999999999999999999999873 43567888
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHHHH
Q 004976 282 SLMHCLCKIG----QWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMV----KKGEKLSVITYNVL 353 (721)
Q Consensus 282 ~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l 353 (721)
.++..|...+ ..+.|..++.+..+.- +.|..+|..+...+....-+.. +..|..+. ..+..+.+...+.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 8888887775 5677888888887763 4478888888888766554444 77776654 34555778899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHH
Q 004976 354 IKGLCQKGLVGEAYEILNMMIEK---GMM------PDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNN 424 (721)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 424 (721)
+..+...|++++|...|...... ... ++..+-..+..+....++.+.|.+.|..+++..|+ -...|..
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylR 535 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLR 535 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHH
Confidence 99999999999999999988765 111 22334566777888889999999999999985442 3445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh--
Q 004976 425 LIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELG-HVPNSVTYSSMIDGFCK-- 501 (721)
Q Consensus 425 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 501 (721)
++.+....+...+|...++.+...+ ..++..+..++..+.....+..|.+-|+...+.. ..+|......|++.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5544455678899999999998875 6688888888889999999998888777666542 22566777777776542
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004976 502 ----------IGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLK 571 (721)
Q Consensus 502 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 571 (721)
.+..++|+++|.+++...+ .+...-+.++-++...|++.+|..+|.+...... ....+|..++.+|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 2356789999999888753 3677788889999999999999999999988542 245678899999999
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------
Q 004976 572 AGDLQSARELYNNMLQMG-LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS---------- 640 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------- 640 (721)
.|++-.|+++|+...+.- ...+..+...|+.++.+.|.+.+|.+....+.... +.+......++-+..
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVLKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHHHHHHHHHHhcc
Confidence 999999999999988763 34456788899999999999999999999988763 333333222322221
Q ss_pred ---------cCCChhHHHHHHHHHHHcCCC
Q 004976 641 ---------SQGETEEVFDLIHEMADKGVH 661 (721)
Q Consensus 641 ---------~~g~~~~A~~~~~~~~~~~~~ 661 (721)
..+..+.|.++|..+...+-.
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 123567788888888765433
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-27 Score=237.36 Aligned_cols=607 Identities=14% Similarity=0.116 Sum_probs=467.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSK--NYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
-+..|..+|+.+-..+-......+.. ...+...+ +.+.|.+.|...++.+ |++.-.+..-+......+++..|+.+
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 45678888887766552222222222 22233334 3699999999999875 67777777777778889999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK---AKRFKEALDILPDMEAV 201 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 201 (721)
|..++..++...+...-.+..++.+.|+.+.|+..|.++.+.+ |.++.++-.|...-.. ...+..+...+......
T Consensus 187 yk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 9999887776666667777788899999999999999999984 3344444444433222 34466777777777665
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch
Q 004976 202 GCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD--ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVT 279 (721)
Q Consensus 202 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 279 (721)
+ .-|+...+.|.+.|.-.|++..+..+.+.+...... .-...|..++++|...|++++|..+|.+..+....--+..
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4 457778899999999999999999999998875321 1345689999999999999999999999987742212445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 280 YNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGG----RATKAIDLLNWMVKKGEKLSVITYNVLIK 355 (721)
Q Consensus 280 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (721)
+..++..+...|+.+.+...|+.+.+. .+.+..+...++..|...+ ..+.|..++.+..+. .+.+...|..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHH
Confidence 677899999999999999999999986 2334777788888887765 567888888888876 4568889988888
Q ss_pred HHHhcCCHhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCC------CChhhHHH
Q 004976 356 GLCQKGLVGEAYEILNMMI----EKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKE-EKYVQ------LDVVTYNN 424 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~------~~~~~~~~ 424 (721)
.+-...-+.. +..|..+. ..+..+.+...+.++..+...|++++|...|..+... .+... ++..+-..
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 8766555444 77777655 3455577889999999999999999999999998864 11111 23345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004976 425 LIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM 504 (721)
Q Consensus 425 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 504 (721)
+..++-..++++.|.+.|..+.+.. |.-+..|..++......+...+|...++..+..+- .++..+..++..+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhh
Confidence 8888888999999999999999874 33445566665444556788999999999988753 377778888888988888
Q ss_pred HHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004976 505 LNIAKGIFSKMRVSGN-DPTLFDYNALMASLCK------------ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLK 571 (721)
Q Consensus 505 ~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 571 (721)
+..|.+-|+.+...-. .+|..+...|+..|.+ .+.+++|+.+|.++++.+ +.|...-+.++-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 8888887777665422 3566777777776643 356788999999999865 3466788889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChhHHHH
Q 004976 572 AGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS-GHKPNACVYDSLLKGFSSQGETEEVFD 650 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 650 (721)
.|++.+|..+|.+..+.. .....+|.+++++|..+|+|-.|+++|+...+. ....+..+...|++++.+.|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999974 456788999999999999999999999999876 445688899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHH
Q 004976 651 LIHEMADKGVHLDQEL 666 (721)
Q Consensus 651 ~~~~~~~~~~~p~~~~ 666 (721)
.+..+.. +.|.+..
T Consensus 738 ~ll~a~~--~~p~~~~ 751 (1018)
T KOG2002|consen 738 ALLKARH--LAPSNTS 751 (1018)
T ss_pred HHHHHHH--hCCccch
Confidence 9999998 6775544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-27 Score=227.68 Aligned_cols=453 Identities=19% Similarity=0.200 Sum_probs=362.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 004976 210 YSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCK 289 (721)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (721)
...+..-..+.|++++|++.....-..++. +......+...+.+..+.++....-....+.. +.-..+|..++..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666677888898888877766555433 44455556667777777777766655555542 3346688889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 004976 290 IGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYE 368 (721)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 368 (721)
.|+++.|+..++.+++. .|+ ..+|..+..++...|+.+.|.+.|...++.+ |........++..+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998885 444 7788899999999999999999998888763 2234445566777777899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004976 369 ILNMMIEKGMMPD-VVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAE 447 (721)
Q Consensus 369 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 447 (721)
.|.++++.. |. ...|..++..+..+|+...|+..|+++++.+|. -...|..++..|...+.+++|+..|.++..
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~---f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN---FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc---chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 998888752 33 457888888889999999999999999886654 345788999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004976 448 RGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDY 527 (721)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 527 (721)
.. +.....+..++..|..+|..+-|+..|++.++..+. -...|+.+..++-..|+..+|..+|.+.+...+. .....
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 64 555677888888899999999999999999987654 5778999999999999999999999999887422 46678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHH
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANCEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LTYSTLIHRFL 605 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 605 (721)
+.|+..|...|.+++|..+|...... .|.- ...+.|+..|.++|++++|+..|+++++ +.|+. ..++.++..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 89999999999999999999999884 3554 4788899999999999999999999998 67775 68999999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCchhh
Q 004976 606 RFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQEL-TSTILVCLCNISEDLD 682 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~ 682 (721)
..|+...|+..+.+++..+ |.-.+.+..|+..|...|+..+|++-|+.+++ ++||... +..++.++--...+.+
T Consensus 434 e~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999999999864 44467899999999999999999999999998 8898544 4466666544444444
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=6.8e-27 Score=222.67 Aligned_cols=446 Identities=17% Similarity=0.148 Sum_probs=276.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 178 IVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 178 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
|..-..+.|++++|++.-..+-..+ +.+......+-..+.+..+++.....-....+..+. -.++|..+++.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhch
Confidence 3334445566666655544433322 112222223333444444555444443333333222 44556666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 004976 258 FDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLN 336 (721)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 336 (721)
+++|+.+|+.+++.. +.....|..++.++...|+.+.|.+.|.+.++. .|+ ......+...+...|+..+|...|.
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 666666666666552 113556666666666666666666666665553 333 2223334444445566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 004976 337 WMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD-VVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYV 415 (721)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 415 (721)
+.++.. +--...|..|+..+..+|+...|++.|+++.+. .|+ ...|..++..|...+.++.|...|.+++...+
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-- 283 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-- 283 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC--
Confidence 665542 223445666666666666666666666666653 233 34566666666666666666666666665332
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 416 QLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSM 495 (721)
Q Consensus 416 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 495 (721)
....++..++..|...|..+.|+..|++.++.. |.-+..|+.++.++-..|+..+|...|.+++...+. .....+.+
T Consensus 284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred -cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 234555666666667777777777777776653 334566777777777777777777777777776543 56667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCC
Q 004976 496 IDGFCKIGMLNIAKGIFSKMRVSGNDPT-LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDV-VSFNTMINGTLKAG 573 (721)
Q Consensus 496 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 573 (721)
+..+...|.+++|..+|....+. .|. ....+.|+..|.++|++++|+..|+++++ +.|+. ..++.++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 77777777777777777777765 333 45677788888888888888888888887 55665 47888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 004976 574 DLQSARELYNNMLQMGLPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQG 643 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 643 (721)
+.+.|++.|.+++. +.|. ...++.|+..|-..|+..+|+..|+.+++.. |..+..+-.++.++.-..
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHh
Confidence 88888888888888 4454 4677888888888888888888888888763 334556666666644433
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=1.2e-20 Score=181.59 Aligned_cols=620 Identities=12% Similarity=0.048 Sum_probs=495.4
Q ss_pred HHHHhcCCCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004976 37 LRLLFEKPNS---QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFV 113 (721)
Q Consensus 37 l~~l~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (721)
|.++....+| +...|..++....+.+|. ++..|..-+..--..|.+..|..+..+--+. .+.+...|..-+
T Consensus 253 L~sm~p~~~~dl~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai---- 326 (913)
T KOG0495|consen 253 LNSMIPTSGGDLEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI---- 326 (913)
T ss_pred HHhcCCCccCcHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----
Confidence 4455554444 567899999999998876 7788888888888889999999887776554 577888887766
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004976 114 QTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALD 193 (721)
Q Consensus 114 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 193 (721)
+....+.|..+...+++.. +.++..|...+.. ..+...=.+++++.++. +|.++..|-..+ ...+.+.|.-
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~dari 397 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARI 397 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHH
Confidence 5568888999999998874 4466666554432 23455566788888887 355666665544 4456677999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHH----
Q 004976 194 ILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDML---- 269 (721)
Q Consensus 194 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 269 (721)
++.+..+. ++.+...| -++.+..-|+.|..++.++.+. ++.+..+|..-...--.+|+.+...++..+.+
T Consensus 398 lL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~ 471 (913)
T KOG0495|consen 398 LLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQ 471 (913)
T ss_pred HHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99988875 23333444 4566778899999999999986 67699999999999999999999999988765
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004976 270 EKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD--VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSV 347 (721)
Q Consensus 270 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (721)
..|+.-+...|..=...+-..|..-.+..+....+..|+... ..+|..-...+.+.+.++-|+.+|...++- .+.+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchh
Confidence 346777777888888888888999999999999988776533 567889999999999999999999999987 56678
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHH
Q 004976 348 ITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQ 427 (721)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 427 (721)
..|...+..--..|..++-..+++++... .+.....|...+..+...|+...|+.++..+.+-.+ .+...|...+.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p---nseeiwlaavK 626 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP---NSEEIWLAAVK 626 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHH
Confidence 88888888888899999999999999986 344556677777788888999999999999998544 37788888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004976 428 GLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNI 507 (721)
Q Consensus 428 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 507 (721)
......+++.|..+|.+.... .|+...|..-+......+..++|++++++.++.-+ .-...|..+++.+-+.++.+.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHH
Confidence 899999999999999999875 67889999888888889999999999999998743 357789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 508 AKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 508 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
|.+.|..-.+.. +..+..|..+...-.+.|.+-.|+.++++....+ +.+...|...+++-.+.|+.+.|..+..++++
T Consensus 704 aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998877763 3357788889988899999999999999999877 34677899999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HH
Q 004976 588 MGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ-EL 666 (721)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 666 (721)
. ++.+...|..-+...-+.++-......+++. ..|+..+..++..+....++++|.++|+++++ ..||. .+
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~ 853 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDA 853 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchH
Confidence 6 5666778887777777777755555555554 66888899999999999999999999999998 66765 55
Q ss_pred HHHHHHHHHhcCchhhHhhHHHHHHhccC
Q 004976 667 TSTILVCLCNISEDLDVAKLFPTFSQETS 695 (721)
Q Consensus 667 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 695 (721)
|..++......+.+.+..+.+.++..-..
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 66666665554555555556656555443
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=1.8e-20 Score=187.86 Aligned_cols=650 Identities=15% Similarity=0.099 Sum_probs=433.6
Q ss_pred cchHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 004976 31 SDVETQLRLLFEKP-----NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSL 105 (721)
Q Consensus 31 ~~~~~~l~~l~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 105 (721)
+.+..-+++++... .|++++|.+++..+++++|. +...|..|+.+|-.+|+.+++...+-.+...+ |.+...|
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W 210 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELW 210 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHH
Confidence 34555566666643 38999999999999999866 88899999999999999999999988877665 7777899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHHHH
Q 004976 106 SGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYN----TIVNG 181 (721)
Q Consensus 106 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~ 181 (721)
..+.....++|+++.|.-+|.++++.+++ +......-+..|.+.|+...|...|.++.....+.|..-.. .++..
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754 55555666788999999999999999999884222222222 23455
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCC-----------------------
Q 004976 182 LCKAKRFKEALDILPDMEAVG-CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKG----------------------- 237 (721)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------- 237 (721)
+...++.+.|.+.++.....+ -.-+...++.++..+.+...++.|...........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 667777799999998887732 12344567888999999999999988887776511
Q ss_pred ----CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004976 238 ----LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGI--SPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD 311 (721)
Q Consensus 238 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (721)
..++..+ ..+.-++......+....+.....+.+. ..++..|..+..++...|++.+|+.+|..+......-+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1112222 1344455555666666666666666553 33466788999999999999999999999998754445
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--------CCCCCHH
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK--------GMMPDVV 383 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 383 (721)
...|..++.+|...|..++|...|+.++.. .|.+..+...|...+.+.|++++|.+.+..+... +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 778999999999999999999999999987 4557778888999999999999999999986522 2344444
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcC--------------------CCCCCChhhHHHHHHHHHhcCChhHHHHH--
Q 004976 384 SYNTLLMGIGKFGKVDEALELFNLVLKEE--------------------KYVQLDVVTYNNLIQGLCKEDRLDEAVKI-- 441 (721)
Q Consensus 384 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-- 441 (721)
........+...|+.++-+.+-..++... ............++.+-.+.++.....+-
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 55556667777888766444433333210 00111222333444444444432222211
Q ss_pred ----HHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHH----HHHHHHHHHHhcCCHHHHHH
Q 004976 442 ----YHTMAERGISGN--LVTFNILIGKYLTAGIIDKALEMWKHLLELGHV-PNSV----TYSSMIDGFCKIGMLNIAKG 510 (721)
Q Consensus 442 ----~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~A~~ 510 (721)
+.-....++.-+ ...+..++.++.+.+.+++|+.+...+.+...- -+.. .-...+.+.+..+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 111122222211 134456677888899999999999888875321 1121 22334456678899999999
Q ss_pred HHHHHHHc-CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004976 511 IFSKMRVS-GN--DP-TLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNML 586 (721)
Q Consensus 511 ~~~~~~~~-~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 586 (721)
.++.++.. +. .| -...|+.......+.++-.--.+.+..+.......+.......+......+.+..|+..|-++.
T Consensus 688 ~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH
Confidence 99888765 11 11 2345554555555555444444444444433222223333344455567788888998888887
Q ss_pred hCCCCCChhhHH-HHHHHHH----------hcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 004976 587 QMGLPPDALTYS-TLIHRFL----------RFGLLSDAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHE 654 (721)
Q Consensus 587 ~~~~~~~~~~~~-~l~~~~~----------~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 654 (721)
.. .|+....+ .++.++. ++-..-++..++.+..+... ....++++.++++|-..|-..-|..+|++
T Consensus 768 ~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 768 RQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEK 845 (895)
T ss_pred Hh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 74 46533332 2222222 12235667777777776521 23567888899999999999999999999
Q ss_pred HHHcCC-------CCC----HHHHHHHHHHHHhcCchhhHhhHHH
Q 004976 655 MADKGV-------HLD----QELTSTILVCLCNISEDLDVAKLFP 688 (721)
Q Consensus 655 ~~~~~~-------~p~----~~~~~~ll~~~~~~~~~~~~~~~~~ 688 (721)
.+.... .++ ....++ +...++.+|+.+.|.-+.
T Consensus 846 vL~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 846 VLEVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQIL 889 (895)
T ss_pred HhCCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHHHH
Confidence 887310 111 222222 223467788877776543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.5e-21 Score=208.61 Aligned_cols=256 Identities=16% Similarity=0.105 Sum_probs=172.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004976 395 FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKAL 474 (721)
Q Consensus 395 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (721)
.+.+++|.+.|+.++......+.....+..++..+...|++++|+..++++++.. |.....|..++..+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3566777777777765321112234456666667777777777777777777653 334556677777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 475 EMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNAN 554 (721)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 554 (721)
..++++++..+. +...+..++..+...|++++|+..|++.++..+ .+...+..++.++.+.|++++|+..|+++++..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777776543 566777777777777777777777777776632 245566677777777888888888887777643
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hh-------HHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 004976 555 CEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LT-------YSTLIHRFLRFGLLSDAKSVYQKMVASGHK 626 (721)
Q Consensus 555 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (721)
+.+...++.++.++...|++++|+..|+++++.. |+. .. +...+..+...|++++|.+++++++..+ +
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-P 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C
Confidence 2345677777777778888888888888877742 321 11 1111122333578888888888887764 4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+...+..++.++...|++++|+++|+++.+
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556777788888888888888888888876
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.4e-21 Score=207.06 Aligned_cols=431 Identities=13% Similarity=0.026 Sum_probs=286.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHh
Q 004976 175 YNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCS 254 (721)
Q Consensus 175 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (721)
+...+..+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++.+++.++. +..++..++.+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445566677777777777777777664 466667777777777777777777777777776433 56677777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004976 255 NGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDL 334 (721)
Q Consensus 255 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 334 (721)
.|++++|+..|..+...+.. +......++..+.. ..+........+.. +++...+..+...+ ..........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhh
Confidence 77777777777665543211 11111111111111 12222233333321 12222222222221 11111111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 004976 335 LNWMVKKGEKLSVITYNVLIKGL---CQKGLVGEAYEILNMMIEKG-MMP-DVVSYNTLLMGIGKFGKVDEALELFNLVL 409 (721)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 409 (721)
+......... ....+..+...+ ...+++++|+..|+.+++.+ ..| ....+..++..+...|++++|+..+++++
T Consensus 280 ~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 280 LEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111000 111111111111 23467889999999888764 223 34567777888888999999999999998
Q ss_pred hcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004976 410 KEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNS 489 (721)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 489 (721)
..++ .....+..++.++...|++++|+..++++.+.. +.+...+..++..+...|++++|+..|+++++..+. +.
T Consensus 359 ~l~P---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 359 ELDP---RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HcCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 7543 245678888888889999999999999988875 567888889999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHH
Q 004976 490 VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVV------SFN 563 (721)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~ 563 (721)
..+..++.++.+.|++++|+..+++++... +.+...++.++.++...|++++|++.|++++......+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 778888889999999999999999988763 3357788889999999999999999999988754221111 122
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
..+..+...|++++|.+++++++... +.+...+..++.++...|++++|++.|+++.+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22233445799999999999998853 334457888999999999999999999999876
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.9e-18 Score=173.59 Aligned_cols=619 Identities=13% Similarity=0.031 Sum_probs=417.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGF 147 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (721)
......++.++.+|++++|.+++.++++.+ |.+...|..++.+|-+.|+.+++...+-.+...++. +...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344455677888899999999999999986 888999999999999999999999999888877644 679999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCh
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNL----ITYSTLMDGLCKDGRV 223 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~ 223 (721)
.+.|+++.|.-+|.++++.+ |++....-.-...|.+.|+...|...|.++.....+.|. .....++..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999985 555555555567899999999999999999987421121 2233456677778888
Q ss_pred hHHHHHHHHHhHCC-CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCC---------------------------CCC
Q 004976 224 DEAMGLLEEMKAKG-LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG---------------------------ISP 275 (721)
Q Consensus 224 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~ 275 (721)
+.|.+.++.....+ -..+...++.++..+.+...++.|........... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999999887632 23356678899999999999999999888876611 111
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRP--DVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVL 353 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (721)
+... ..+.-++.+....+....+.....+.+..| +...+..+..++...|++.+|+.++..+......-+...|..+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 123344455555555555555555555333 4778999999999999999999999999987555567899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC------CCCCChhhHHHHHH
Q 004976 354 IKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEK------YVQLDVVTYNNLIQ 427 (721)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~l~~ 427 (721)
+.+|...|.+++|.+.|+..+... +.+......+...+.+.|+.++|.+.+..+...++ ...|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999999863 23556777888889999999999999998764221 12334445566677
Q ss_pred HHHhcCChhHHHHHHHHHHHCC----------------------CCCChhhHHHHHHHHHhcCCHHHHHHHH------HH
Q 004976 428 GLCKEDRLDEAVKIYHTMAERG----------------------ISGNLVTFNILIGKYLTAGIIDKALEMW------KH 479 (721)
Q Consensus 428 ~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~------~~ 479 (721)
.+.+.|+.++-+.+...|+... .+........+..+-.+.++......-. ..
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 7888888887666655554311 1111222233333333333322221111 11
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 480 LLELGHVPN--SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN-DPTLF----DYNALMASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 480 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 552 (721)
....+...+ -..+..++..+++.+++++|..+...+..... ..+.. .-...+.+....+++..|...++.+..
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111222222 24556777889999999999999988876532 11222 223344566778999999999998887
Q ss_pred c-C--CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 004976 553 A-N--CEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN 628 (721)
Q Consensus 553 ~-~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 628 (721)
. + ..|.. ..|+...+...+.++-.-=..++..+.......++......++.....+.+..|...+-.+.... |.+
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~ 773 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDS 773 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCC
Confidence 4 1 12222 35665666666666655555555555543322223344445566678899999999988887753 333
Q ss_pred HHHHHHHHHHHH----------cCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCchhhHhhH-HHHHHhc
Q 004976 629 ACVYDSLLKGFS----------SQGETEEVFDLIHEMADKGVH-LDQELTSTILVCLCNISEDLDVAKL-FPTFSQE 693 (721)
Q Consensus 629 ~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~ 693 (721)
+.+-..++-++. ++-..-++..++.+..+.-.. -.-...+++..++.. -|-...|.- ..+.+..
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~-~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ-IGLVHLAVSYYEKVLEV 849 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHhCC
Confidence 333222222221 122356677777777653111 134556677777554 444444443 3344443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.5e-20 Score=202.64 Aligned_cols=430 Identities=13% Similarity=0.092 Sum_probs=273.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 004976 206 NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMH 285 (721)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 285 (721)
+.....-.+.+....|+.++|++++.+..... +.+...+..++.++...|++++|..+|+++++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344445555666777777777777766522 2244456677777777777777777777776652 224455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 004976 286 CLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGE 365 (721)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (721)
++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..++.++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6777777777777777776652 22344 6666666777777777777777777653 3355555556666666667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCCh---hHHHHHH
Q 004976 366 AYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRL---DEAVKIY 442 (721)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~ 442 (721)
|+..++.+.. .|+.. ..+ ....+....... +.......+++ ++|+..+
T Consensus 169 Al~~l~~~~~---~p~~~--~~l--------~~~~~~~~~r~~----------------~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 169 ALGAIDDANL---TPAEK--RDL--------EADAAAELVRLS----------------FMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHhCCC---CHHHH--HHH--------HHHHHHHHHHhh----------------cccccChhHHHHHHHHHHHHH
Confidence 7766655443 12200 000 000000000000 00001111223 5667777
Q ss_pred HHHHHCC-CCCChh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 443 HTMAERG-ISGNLV-TF----NILIGKYLTAGIIDKALEMWKHLLELGHV-PNSVTYSSMIDGFCKIGMLNIAKGIFSKM 515 (721)
Q Consensus 443 ~~~~~~~-~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 515 (721)
+.+.+.- ..|+.. .+ ...+..+...|++++|+..|+.+++.+.. |+. ....+..++...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7766431 112111 11 11123345667888888888888776532 222 2222466778888888888888887
Q ss_pred HHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHcCCCHHHH
Q 004976 516 RVSGNDP---TLFDYNALMASLCKESSLEQAKRLFIEIRNANC-----------EPD---VVSFNTMINGTLKAGDLQSA 578 (721)
Q Consensus 516 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A 578 (721)
....+.. .......+..++...|++++|..+++++..... .|+ ...+..++..+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 7653211 123455566677788888888888888776431 123 23456677888999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 004976 579 RELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADK 658 (721)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 658 (721)
++.++++.... |.+...+..++..+...|++++|++.+++++... |.+...+...+..+...|++++|...++++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~- 455 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA- 455 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 99999999864 5667888999999999999999999999999874 66788888999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHH
Q 004976 659 GVHLDQELTSTILVCL 674 (721)
Q Consensus 659 ~~~p~~~~~~~ll~~~ 674 (721)
..|++.....+-..+
T Consensus 456 -~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 456 -REPQDPGVQRLARAR 470 (765)
T ss_pred -hCCCCHHHHHHHHHH
Confidence 788888777666654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.3e-19 Score=195.12 Aligned_cols=407 Identities=11% Similarity=0.006 Sum_probs=205.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKG 151 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 151 (721)
=.+.+....|+.++|+.+|.++.... +.+...+..++.++...|++++|...++.+++.. +.++.++..++..+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555566666777766666666532 3444456666666666666666666666666553 334555666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004976 152 EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLE 231 (721)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 231 (721)
++++|+..++++.+.. +.+.. +..+..++...|++++|+..++++.... +.+...+..++.++...+..+.|+..++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 6666666666666552 33444 5566666666666666666666666653 2233344455555656666666666665
Q ss_pred HHhHCCCCCCc------cchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH---HHHHHHHHH
Q 004976 232 EMKAKGLDADV------VVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQW---KEAIAMLDA 302 (721)
Q Consensus 232 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~ 302 (721)
.+.. .|+. .....++..... ......+++ ++|+..++.
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHHHHH
Confidence 5443 1110 000000000000 000111222 455555655
Q ss_pred HHHC-CCCCChh-hH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 303 MMER-GIRPDVV-TY----TCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK 376 (721)
Q Consensus 303 ~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (721)
+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+........++.+|...|++++|+..|+++.+.
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5542 1112111 11 1112233455666666666666665532211112222455666666666666666666543
Q ss_pred CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---------CCCC---hhhHHHHHHHHHhcCChhHHHHH
Q 004976 377 GMMP---DVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKY---------VQLD---VVTYNNLIQGLCKEDRLDEAVKI 441 (721)
Q Consensus 377 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~---~~~~~~l~~~~~~~~~~~~A~~~ 441 (721)
.... .......+..++...|++++|.+.++.+....|. ..|+ ...+..++..+...|++++|+..
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2110 1223444444556666666666666666553221 0111 11233444455555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 442 YHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
++++.... |.+...+..++..+...|++++|++.+++++...+. +...+...+..+...|++++|..+++++++.
T Consensus 382 l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55555443 444555555555555555555555555555554322 3344444444555555555555555555554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.1e-20 Score=194.63 Aligned_cols=358 Identities=13% Similarity=0.070 Sum_probs=239.1
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 45 NSQYAEAVSLFQRAICSD--RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFAL 122 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 122 (721)
+.+|+.-.-.|....+.- .-.+.....-.+..+.+.|++++|+.+++..+... |.+...+..++.+....|+++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHH
Confidence 346766666666554322 11122233445666777788888888888877764 666667777777777788888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 123 GVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
..++.+++.. |.++.++..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 8888887765 3366777777777888888888888888877763 4456677777777888888888888887776543
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHH
Q 004976 203 CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNS 282 (721)
Q Consensus 203 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 282 (721)
+.+...+..+ ..+...|++++|...++.+++..+.++...+..++..+...|++++|...|+++...+ +.+...+..
T Consensus 175 -P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 175 -PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred -CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 2222333332 3466778888888888777665433344444455667777788888888888777653 224556667
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 283 LMHCLCKIGQWKE----AIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLC 358 (721)
Q Consensus 283 l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (721)
++..+...|++++ |+..|+++.... +.+..++..++..+...|++++|...++++.... +.+...+..++.++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~ 329 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 7777777777774 677777777652 2245567777777777777777777777777653 335566666777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004976 359 QKGLVGEAYEILNMMIEKGMMPDV-VSYNTLLMGIGKFGKVDEALELFNLVLKEE 412 (721)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 412 (721)
+.|++++|+..++++...+ |+. ..+..++.++...|+.++|+..|+++++..
T Consensus 330 ~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777777777777777642 332 233334556667777777777777777643
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.7e-20 Score=194.36 Aligned_cols=345 Identities=16% Similarity=0.127 Sum_probs=272.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
..|++++|..+++.++...+. +...+..++.+....|++++|+..|++++..+ |.+...+..++..+.+.|++++|..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 468999999999999988766 56777777888888999999999999999886 7778889999999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004976 124 VIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC 203 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 203 (721)
.++.+++.. +.+..++..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.....
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998875 4477888888999999999999999999887763 3334444333 347888999999999999877642
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCcch
Q 004976 204 CPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDK----GKKLFDDMLEKGISPNVVT 279 (721)
Q Consensus 204 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~ 279 (721)
.++...+..++..+...|++++|+..++++.+..+. +...+..++..+...|++++ |...|++++... +.+...
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a 286 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRI 286 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHH
Confidence 334445556677888999999999999999887544 77788889999999999885 799999998864 335668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004976 280 YNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ 359 (721)
Q Consensus 280 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (721)
+..++..+...|++++|+..+++..... +.+...+..+..++.+.|++++|...++.+....+. +...+..++.++..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~ 364 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 8889999999999999999999988863 224667778888999999999999999998876332 33445556778889
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 004976 360 KGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLK 410 (721)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 410 (721)
.|++++|+..|+++.+.. |+.. ...+++|...+...+.
T Consensus 365 ~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 365 AGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQIS 402 (656)
T ss_pred CCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHH
Confidence 999999999999988753 3321 2344566666666665
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=2.7e-17 Score=158.82 Aligned_cols=592 Identities=12% Similarity=0.036 Sum_probs=425.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 43 KPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFAL 122 (721)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 122 (721)
...|++..|..+..+=-+.-+ .+-++|...+ +....+.|..+.-.+++. .|.+...|...+..-. +...=.
T Consensus 296 EvagKl~~Ar~~I~~GCe~cp-rSeDvWLeai----RLhp~d~aK~vvA~Avr~-~P~Sv~lW~kA~dLE~---~~~~K~ 366 (913)
T KOG0495|consen 296 EVAGKLSVARNLIMKGCEECP-RSEDVWLEAI----RLHPPDVAKTVVANAVRF-LPTSVRLWLKAADLES---DTKNKK 366 (913)
T ss_pred HHhhHHHHHHHHHHHHHhhCC-chHHHHHHHH----hcCChHHHHHHHHHHHHh-CCCChhhhhhHHhhhh---HHHHHH
Confidence 445777777776665444333 3778887644 556778888888888876 4777777766654432 233345
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 123 GVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
+++..+++. .+.++..|-..+ ...+.+.|+.++.++.+. ++.+...| .+|.+..-|+.|..++.+..+.
T Consensus 367 RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 677777765 344565555443 445666688888888876 23344444 3455666788888888887764
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh----HCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--
Q 004976 203 CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMK----AKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPN-- 276 (721)
Q Consensus 203 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 276 (721)
++.+...|.+....--.+|+.+...+++.+.+ ..|+..+...|..=+..+-..|..--+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 56677778777777777888888777776543 457777777888888888888888888888888877765432
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 277 VVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKG 356 (721)
Q Consensus 277 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (721)
..+|..-...|.+.+-++-|..+|...++. ++.+...|......--..|..+....+++++... .|.....|...+..
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 347888888888888888888888888875 3335666777776667778888888888888876 45566677777777
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChh
Q 004976 357 LCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLD 436 (721)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 436 (721)
+-..|+...|..++..+.+.... +...|...+........++.|+.+|.++.. ..+...+|..-+....-.++.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~----~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS----ISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc----cCCcchhhHHHhHHHHHhhhHH
Confidence 77788888888888888876433 566777777788888888888888888865 3357777777777777778888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 437 EAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMR 516 (721)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (721)
+|.+++++.++. ++.-...|..+++.+-+.++.+.|.+.|..-.+.-+ .....|..+...--+.|..-+|..++++..
T Consensus 669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 888888888776 244456777888888888888888888887776533 366778878777778888888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 004976 517 VSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALT 596 (721)
Q Consensus 517 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 596 (721)
-.++. +...|...+++-.+.|+.+.|..++.++++.- +.+...|...+....+.++-......++ + ...|+.+
T Consensus 747 lkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphV 819 (913)
T KOG0495|consen 747 LKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHV 819 (913)
T ss_pred hcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchh
Confidence 77533 67788888888888888888888888888753 3345577777777666666444443333 2 4567777
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 004976 597 YSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ-ELTSTILVC 673 (721)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 673 (721)
...++..+....++++|++.|.+++..+ +....+|..+...+.++|.-++-.+++.+... -.|.. ..|...-..
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 7778888888888888888888888875 66677888888888888888888888888776 45543 334443333
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.1e-18 Score=185.37 Aligned_cols=442 Identities=13% Similarity=0.065 Sum_probs=268.1
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004976 31 SDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIE 110 (721)
Q Consensus 31 ~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 110 (721)
+.-..+..+++...+|+++.|+..|+++++.+|.....++ .++..+...|+.++|+.++++++.. .+.+......++.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 3345688888888899999999999999998876444555 7788888999999999999999821 1333344455577
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 111 VFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKE 190 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 190 (721)
.+...|++++|+++|+.+++..+. ++.++..++..+...++.++|+..++++.+. .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 899999999999999999988654 6788888889999999999999999999887 5565555445445545667767
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccch--HHHHHHHH---------hcCC--
Q 004976 191 ALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVY--SALISGFC---------SNGS-- 257 (721)
Q Consensus 191 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g~-- 257 (721)
|++.++++.... +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-.+ ..++
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999874 445667788888888999888888776653321 11111000 00000011 1111
Q ss_pred -hhHHHHHHHHHHhC-CCCCCc-c----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH
Q 004976 258 -FDKGKKLFDDMLEK-GISPNV-V----TYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATK 330 (721)
Q Consensus 258 -~~~A~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (721)
.+.|+.-++.+... +..|.. . +..-.+-++...|++.++++.|+.+...+.+.-..+...++++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 23334444444332 111211 1 1112334455566666666666666655433233355556666666666666
Q ss_pred HHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHH
Q 004976 331 AIDLLNWMVKKGE-----KLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGM-----------MPDV---VSYNTLLMG 391 (721)
Q Consensus 331 a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~ 391 (721)
|..+|+.+..... +++......|..+|...+++++|..+++.+.+... .|++ .....++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 6666666654321 12222234556666666666666666666665211 1111 122233444
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 392 IGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIID 471 (721)
Q Consensus 392 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (721)
+...|+..+|.+.++.+....| .+......++..+...|.+.+|...++.+.... |.+..+....+..+...++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP---~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAP---ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 4555555555555555554333 255555555555555555555555554444432 334444555555555555555
Q ss_pred HHHHHHHHHHHc
Q 004976 472 KALEMWKHLLEL 483 (721)
Q Consensus 472 ~A~~~~~~~~~~ 483 (721)
+|..+.+.+.+.
T Consensus 502 ~A~~~~~~l~~~ 513 (822)
T PRK14574 502 QMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhh
Confidence 555555555554
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=6.1e-21 Score=194.15 Aligned_cols=308 Identities=16% Similarity=0.166 Sum_probs=228.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHhHHHHHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN---IYAFNLILK 145 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 145 (721)
..+..+..+...|++++|+..|+++++.+ |.+..++..++..+...|++++|...++.++.....++ ...+..++.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444666677788888888888888765 55666777788888888888888888887776432111 245677788
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcC
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPN----LITYSTLMDGLCKDG 221 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~ 221 (721)
.|...|++++|+.+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+...+..+. ...+..++..+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888888753 45667788888888888888888888888877542221 123456777788888
Q ss_pred ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004976 222 RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLD 301 (721)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 301 (721)
++++|...++++.+..+. +...+..++..+.+.|++++|.++|+++...+......++..++.+|...|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888876433 5667778888888889999999988888876322224567778888888899999999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHCCC
Q 004976 302 AMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ---KGLVGEAYEILNMMIEKGM 378 (721)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~ 378 (721)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 88875 456566677888888889999999999888776 4566677766666654 4578888888888887766
Q ss_pred CCCHH
Q 004976 379 MPDVV 383 (721)
Q Consensus 379 ~~~~~ 383 (721)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 65554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=2.5e-18 Score=182.70 Aligned_cols=444 Identities=12% Similarity=0.050 Sum_probs=304.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
.+......+.+.++.|+++.|+..|+++++.+ |.+......++..+...|+.++|+.++++++... +.+......++.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 44455566777899999999999999999876 4443333488899999999999999999997221 233444555577
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
.+...|++++|+.+|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 8999999999999999999985 556777778888899999999999999999886 4666666555555545667767
Q ss_pred HHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH--HHHHHHH---------hcCC--
Q 004976 226 AMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYN--SLMHCLC---------KIGQ-- 292 (721)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~---------~~g~-- 292 (721)
|++.++++.+..+. +...+..+..++.+.|-...|.++..+-... +.+....+. ..+.-.+ ...+
T Consensus 188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999998654 7888899999999999999998877664322 111111110 0000111 1112
Q ss_pred -HHHHHHHHHHHHHC-CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 004976 293 -WKEAIAMLDAMMER-GIRPDV-----VTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGE 365 (721)
Q Consensus 293 -~~~A~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (721)
.+.|+.-++.+... +..|.. .+....+.++...|+..++++.|+.+...+.+....+...++.+|...+.+++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 23455555555542 111221 12234556677788888888888888877766556677788888888888888
Q ss_pred HHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-C--------CCCh---hhHHHHHHH
Q 004976 366 AYEILNMMIEKGM-----MPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKY-V--------QLDV---VTYNNLIQG 428 (721)
Q Consensus 366 a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------~~~~---~~~~~l~~~ 428 (721)
|+.+|+.+..... .++......|..++...+++++|..+++.+....|. . .|+. .....++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 8888888866421 223333466777888888888888888888763331 0 1111 223344555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004976 429 LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIA 508 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (721)
+...|+..+|++.++.+.... |.|......++..+...|.+.+|...++.+....+. +.......+.++...+++.+|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHH
Confidence 666777777777777776654 666777777777777777777777777666555433 455556666666677777777
Q ss_pred HHHHHHHHHc
Q 004976 509 KGIFSKMRVS 518 (721)
Q Consensus 509 ~~~~~~~~~~ 518 (721)
..+.+.+.+.
T Consensus 504 ~~~~~~l~~~ 513 (822)
T PRK14574 504 ELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhh
Confidence 7777766665
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.2e-21 Score=193.64 Aligned_cols=299 Identities=17% Similarity=0.128 Sum_probs=202.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 004976 105 LSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD---NCSYNTIVNG 181 (721)
Q Consensus 105 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 181 (721)
.+..+..+...|++++|...|..+++.++ .+..++..++..+...|++++|..+++.+.+.+..++ ...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34445556677778888888888777643 3566777777777788888888888877776421111 2356667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCc----cchHHHHHHHHhcCC
Q 004976 182 LCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADV----VVYSALISGFCSNGS 257 (721)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 257 (721)
|.+.|++++|..+|+++.... +++..++..++..+.+.|++++|.+.++.+.+.++.+.. ..+..++..+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 777788888888887777643 345567777777777788888888888777765433221 234556677777788
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004976 258 FDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW 337 (721)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 337 (721)
+++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.++...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777653 2234566677777777888888888887777643222234566777777778888888888777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHh
Q 004976 338 MVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGK---FGKVDEALELFNLVLK 410 (721)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 410 (721)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++.+++
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 77653 34444567777777788888888888777764 4666666666655443 4467777777777665
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4e-17 Score=151.67 Aligned_cols=451 Identities=10% Similarity=0.050 Sum_probs=343.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...|...+.--..++++..|..+|++++..+ ..+...|...+.+-.+.+....|..++++++..-|. -...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 56678888888888999999999999999886 677888999999999999999999999999887433 3346666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
+--..|++..|.++|++..+. .|+..+|++.+..-.+.+..+.|..+|++.+-. .|++.+|...+..-.+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 777889999999999999987 899999999999999999999999999999875 6999999999998899999999
Q ss_pred HHHHHHHHhHCCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCCHHHHHHH--
Q 004976 226 AMGLLEEMKAKGLD--ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPN--VVTYNSLMHCLCKIGQWKEAIAM-- 299 (721)
Q Consensus 226 A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~-- 299 (721)
|..+|+.+.+.-.. .+...+.+.+..-.++..++.|.-+|+-+++. ++.+ ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998874111 12345566666666788999999999998876 2323 33455555444555665444332
Q ss_pred ------HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHH--------HHHhcCCH
Q 004976 300 ------LDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSV-I-TYNVLIK--------GLCQKGLV 363 (721)
Q Consensus 300 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~~--------~~~~~~~~ 363 (721)
|+.++..+ +.|-.+|...+..-...|+.+...++|++++.. +||-. . .|...+. .-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455543 447788888888888899999999999999987 44422 1 1111111 11346788
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHH----HHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHH
Q 004976 364 GEAYEILNMMIEKGMMPDVVSYNTLLM----GIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAV 439 (721)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 439 (721)
+.+.++|+..++. ++....|+..+-- -..++.+...|.+++..++. .-|...++...|..-.+.++++.+.
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 9999999998884 4445555554433 34467889999999998875 3367788888888888899999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 440 KIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGH-VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
++|++.++.+ |.+..+|...+..-...|+.+.|..+|+-++.... ......|...+..-...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999886 66788888888888889999999999998887532 122345555566566788899999999998876
Q ss_pred CCCCChhhHHHHHHH
Q 004976 519 GNDPTLFDYNALMAS 533 (721)
Q Consensus 519 ~~~~~~~~~~~l~~~ 533 (721)
.+...+|.+++..
T Consensus 537 --t~h~kvWisFA~f 549 (677)
T KOG1915|consen 537 --TQHVKVWISFAKF 549 (677)
T ss_pred --cccchHHHhHHHH
Confidence 3444566665543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.5e-18 Score=157.69 Aligned_cols=280 Identities=15% Similarity=0.114 Sum_probs=183.3
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004976 391 GIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK--EDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAG 468 (721)
Q Consensus 391 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (721)
-+.+.|+++.|++++.-..+.+.. .....-+.+...+.- ..++.+|..+-+.+...+ ..++.....-.......|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 456778888888877766653322 222222333222222 345667777766666543 345555555555556678
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 469 IIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFI 548 (721)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 548 (721)
++++|.+.|++++..+.. ....+..++-.+-..|+.++|+++|-++... ...+..++..++..|....+..+|++++.
T Consensus 505 d~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 888888888888765322 3344445555677788888888888776543 13356677777888888888888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 004976 549 EIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN 628 (721)
Q Consensus 549 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 628 (721)
+.... ++.|+..+..|+..|-+.|+-..|.+++-.--+. ++-+.++..+|+.-|....-+++|+.+|+++.- ++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 76653 4556777888888888888888887776554443 566778888888878888888888888888765 4778
Q ss_pred HHHHHHHHHH-HHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchh
Q 004976 629 ACVYDSLLKG-FSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCNISEDL 681 (721)
Q Consensus 629 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 681 (721)
..-|..++.. +.+.|++.+|.++|+.... ..|.+......+.-+|..-|-.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccch
Confidence 7777765544 5567888888888888776 4555555544444444444433
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.9e-16 Score=142.88 Aligned_cols=437 Identities=12% Similarity=0.132 Sum_probs=199.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHH
Q 004976 184 KAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKK 263 (721)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 263 (721)
.++++..|..+|++.+... ..+...|...+.+-.++.....|..+++.++..-+. -...|...+.+--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHH
Confidence 3444444555555544433 233444444444444555555555555555443211 22233333444444455555555
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C
Q 004976 264 LFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK-G 342 (721)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~ 342 (721)
+|++..+. .|+..+|...+..-.+-+.++.|..+|++.+- +.|+..+|...+..-.+.|....+..+|+.++.. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55555443 44555555555555555555555555555443 2345555555555445555555555555544432 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCH---HHHHH-----HHHHHHhc
Q 004976 343 -EKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD--VVSYNTLLMGIGKFGKV---DEALE-----LFNLVLKE 411 (721)
Q Consensus 343 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~---~~A~~-----~~~~~~~~ 411 (721)
...+...+.+++..-..+..++.|.-+|+-++++ ++.+ ...|..+..---+.|+. +.++- -|+..+..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0112223333333333444455555555555443 1111 11222222222222322 22211 12222222
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHH--------HHHhcCCHHHHHHHHHHHH
Q 004976 412 EKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLV--TFNILIG--------KYLTAGIIDKALEMWKHLL 481 (721)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~~~~~~A~~~~~~~~ 481 (721)
+ +.|-.+|...+..-...|+.+...++|++++.. +||-.. .|...+. .-....+.+.+.++|+..+
T Consensus 318 n---p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 318 N---PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred C---CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 134445555555555555566666666555543 233211 1111111 1123455666666666665
Q ss_pred HcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004976 482 ELGHVPNSVTYS----SMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEP 557 (721)
Q Consensus 482 ~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 557 (721)
+.-+. ...+|. .....-.++.+...|.+++..++.. -|-..++...+..-.+.++++.+..+|++.+..+ +-
T Consensus 394 ~lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DLIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hhcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 53211 222222 2222233555666666666655533 4455555555555556666666666666666544 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGL-PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLL 636 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 636 (721)
+..+|...+..-...|+.+.|..+|+-+++... ......|...++.-...|.++.|..+|+++++. .+...+|...+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 445555555555556666666666666655421 111234445555555566666666666666654 33444454444
Q ss_pred H
Q 004976 637 K 637 (721)
Q Consensus 637 ~ 637 (721)
.
T Consensus 548 ~ 548 (677)
T KOG1915|consen 548 K 548 (677)
T ss_pred H
Confidence 3
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.6e-18 Score=158.55 Aligned_cols=494 Identities=16% Similarity=0.119 Sum_probs=270.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HhH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSL-SGLIEVFVQTQKPKFALGVIGLILKRGFVVNI----YAF 140 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~ 140 (721)
+..+...++..|.....+.+|+..|+-.++....|+.-.+ ..++..+.+.+++.+|+++|..++..-+..+. .+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3455666777888888888888888888776555555443 56677788888888888888888766444443 345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH--------HH
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITY--------ST 212 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~ 212 (721)
+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+++..-..||..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55556677888888888888887776 566665555566677778888888888888765434443322 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQ 292 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (721)
++.--.+... +..|.+. ...+.++++-.--+++.--+.|+... +
T Consensus 358 ll~eai~nd~-------lk~~ek~-----------------~ka~aek~i~ta~kiiapvi~~~fa~----g-------- 401 (840)
T KOG2003|consen 358 LLNEAIKNDH-------LKNMEKE-----------------NKADAEKAIITAAKIIAPVIAPDFAA----G-------- 401 (840)
T ss_pred HHHHHHhhHH-------HHHHHHh-----------------hhhhHHHHHHHHHHHhccccccchhc----c--------
Confidence 1111111100 0001000 00011111111111111111111100 0
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H-hcCCHhHHHHHH
Q 004976 293 WKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL-C-QKGLVGEAYEIL 370 (721)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~a~~~~ 370 (721)
.+-.++.++.-... +.-...-..-...+.+.|+++.|++++.-+.+.........-+.+-..+ . ...++..|.+.-
T Consensus 402 ~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 402 CDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 01111111111100 0000111112223445555555555555544432221111111111111 1 122455555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 371 NMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGI 450 (721)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 450 (721)
+..+... .-++.....-.......|++++|.+.|.+++..+. .-...+..+.-.+...|+.++|++.|-++... +
T Consensus 480 d~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 480 DIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 5444321 11233333333334455666666666666665211 12233444555566667777777766655432 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNAL 530 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (721)
..+..++..+...|-...+...|++++-++... ++.|+..+..+...|-+.|+-.+|.+++-..-.. ++.+..+...|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 335666666777777777777777777666554 2336667777777777777777777666554443 35566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004976 531 MASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGT-LKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL 609 (721)
Q Consensus 531 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 609 (721)
+..|....-.++++.+|+++.- ++|+..-|..++..| .+.|++++|.++|+...+. ++.|..++..|++.+...|.
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 7777777777778888877765 567777777766544 5677888888888777765 56777777777777666653
No 35
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.83 E-value=3.7e-13 Score=130.51 Aligned_cols=636 Identities=13% Similarity=0.120 Sum_probs=332.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHhhH
Q 004976 34 ETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVR--------SKNYEYAFSVYSKMTCVHIFPSFLSL 105 (721)
Q Consensus 34 ~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~ 105 (721)
..-+|=+-.+......+-..+|+++++.=|. +..+|...+..-.. ...|+..-..|++.+.. ...=+.+|
T Consensus 28 k~W~RYIe~k~~sp~k~~~~lYERal~~lp~-sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~-mHkmpRIw 105 (835)
T KOG2047|consen 28 KCWLRYIEHKAGSPDKQRNLLYERALKELPG-SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF-MHKMPRIW 105 (835)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH-HhcCCHHH
Confidence 3344444445555667888899999887544 88888877743222 11234444445555432 12335678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 106 SGLIEVFVQTQKPKFALGVIGLILKRGF-VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK 184 (721)
Q Consensus 106 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (721)
...++.+..+|+...-+..|+.++..=+ .....+|...+......|-++-++.++++.++. ++..-...+..+.+
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 8888999999999999999999886522 234568888888888889999999999999976 34446777888899
Q ss_pred cCCHHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHH---HHHHHHHhHCCCCCCccchHHHHHHHHhc
Q 004976 185 AKRFKEALDILPDMEAVG------CCPNLITYSTLMDGLCKDGRVDEA---MGLLEEMKAKGLDADVVVYSALISGFCSN 255 (721)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (721)
.+++++|.+.+...+... .+.+...|..+.....+.-+.-.. ..+++.+...=.+.-...|.+|+..|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999999998876531 244556777777776665443332 23344443321122245788999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHH---HHHHhcCChHHH
Q 004976 256 GSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRP-DVVTYTCLI---EGLCKGGRATKA 331 (721)
Q Consensus 256 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~---~~~~~~g~~~~a 331 (721)
|.+++|..+|++.+.. ..++..|..+...|..-....-+.. ++...+.+..+ +...+...+ ..+...+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~---- 334 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK-MELADEESGNEEDDVDLELHMARFESLMNRRP---- 334 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChhhhhhHHHHHHHHHHHHhccc----
Confidence 9999999999998875 2344445555555543211111110 11000011111 111111000 00000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCHHHHHHHH
Q 004976 332 IDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD------VVSYNTLLMGIGKFGKVDEALELF 405 (721)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 405 (721)
-++....-...+.+...|..-+. ...|+..+-+..|.++.+. +.|. ...|..+...|...|+.+.|+.+|
T Consensus 335 -~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 335 -LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred -hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 01111111111223334433322 2345555556666665543 2221 224555566666666666666666
Q ss_pred HHHHhcCCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------------CChhhHHHHHHHHHhc
Q 004976 406 NLVLKEEKYV-QLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGIS-----------------GNLVTFNILIGKYLTA 467 (721)
Q Consensus 406 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~ 467 (721)
+++.+.+-.. ..-..+|..-+.+-.+..+++.|.++.+++....-. .+...|...+...-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 6665521110 001234444445555555666666666555432100 0122344444444455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh---cCCHHHH
Q 004976 468 GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTL-FDYNALMASLCK---ESSLEQA 543 (721)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A 543 (721)
|-++....+|+++++..+. ++......+..+-...-++++.++|++-+..-..|+. .+|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6666666666666665544 4444444444444555566666666665544333332 244444333322 2256666
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHH
Q 004976 544 KRLFIEIRNANCEPDVV--SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQK 619 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (721)
+.+|+++++ +.+|... .|...+..-.+.|-...|+.+|+++... +++.. ..|+..+.--...=-....+++|++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 777776666 3344332 1222222223456666666666666553 23322 3444433322222223344556666
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCchhhHhhHHHHHHhc
Q 004976 620 MVASGHKPNAC---VYDSLLKGFSSQGETEEVFDLIHEMADKGVHL--DQELTSTILVCLCNISEDLDVAKLFPTFSQE 693 (721)
Q Consensus 620 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 693 (721)
+++. -|+.. +....+..-.+.|..+.|..+|.-..+. ..| +...|...- .+-..+|+.+..+-+.++...
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk-~FEvrHGnedT~keMLRikRs 722 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWK-EFEVRHGNEDTYKEMLRIKRS 722 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHH
Confidence 6653 23322 2223333445556666666666655542 222 223333222 223345555555544444433
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-14 Score=139.30 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=221.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 004976 380 PDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNI 459 (721)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (721)
.+.........-+...+++.+..++.+...+.+| +....+..-+.++...|+...-..+-.++.+.- |..+.+|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3556666666777778888888888888887544 445555555667888888888888888887764 667888998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004976 460 LIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESS 539 (721)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 539 (721)
++--|...|...+|.+.|.+....+.. -...|...+..|.-.|..++|...+..+-+.-+. ...-+..++--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhcc
Confidence 888888889999999999888876544 4667888888888889999998888877665222 22223344556778889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhcCCHhHH
Q 004976 540 LEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQM--GLPP----DALTYSTLIHRFLRFGLLSDA 613 (721)
Q Consensus 540 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A 613 (721)
++-|.+.|.++.... +.|+...+.++-.....+.+.+|..+|+..+.. .+.+ -..+++.|+++|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998888743 346677888888888888899999999887732 1111 235678899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004976 614 KSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLC 675 (721)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 675 (721)
+..+++++... +.+..++..++-+|...|+++.|++.|.+++- +.|++.....++....
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999999874 77888999999999999999999999999987 8899988888877643
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.6e-15 Score=136.26 Aligned_cols=366 Identities=12% Similarity=0.081 Sum_probs=197.1
Q ss_pred CCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--h
Q 004976 237 GLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVV--T 314 (721)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ 314 (721)
+...|...+...+..+.+.|..+.|+..|...+.. .+..-.+|..|..... + +++....... .+.|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhc-CcccchHHH
Confidence 34445555556666666777777777777776654 1223333433333221 1 1222222211 111211 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q 004976 315 YTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGM--MPDVVSYNTLLMGI 392 (721)
Q Consensus 315 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 392 (721)
-..+..++....+.+++..-.+.....|.+.+...-+..+.+...+.++++|+.+|+++.+... -.|..+|..++-+.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1223344555556666666666666666666666666666666666777777777777766521 01344555554332
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 393 GKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDK 472 (721)
Q Consensus 393 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (721)
.... .+.++..-.. ....--+.+...+++-|+-.++.+.|+..|+++++.+ |.....|+.+++-|...++...
T Consensus 310 ~~~s----kLs~LA~~v~--~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 310 NDKS----KLSYLAQNVS--NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hhhH----HHHHHHHHHH--HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 2211 1112211111 0011234455566666666666777777777766665 4455566666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 473 ALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 552 (721)
|++.++++++.++. |-..|..++++|.-.+.+.-|+-+|+++.... +.|...|..|+.+|.+.++.++|++.|..+..
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 77777777666544 66666667777766666666666666666653 33566666666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 553 ANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQM----GLPPD--ALTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 553 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
.+ ..+...+..|+..|.+.++.++|..+|++.++. |...+ ...-..|..-+.+.+++++|..+.....
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 44 123355666666666666666666666655542 11111 1122224444445555555555444443
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.78 E-value=2.7e-12 Score=124.72 Aligned_cols=575 Identities=11% Similarity=0.093 Sum_probs=360.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-HIFPSFLSLSGLIEVFVQTQKPKFALGVI 125 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 125 (721)
.|+..-..|++++-..- --+.+|...+..+.++|+.-..+..|+++++. .+.....+|...+....+.+-++-+..+|
T Consensus 83 ~~~~vn~c~er~lv~mH-kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMH-KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 34444445555543221 24568888899999999999999999999987 34445668999999999999999999999
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCH---HHHHHHHH
Q 004976 126 GLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNG------VSPDNCSYNTIVNGLCKAKRF---KEALDILP 196 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~ 196 (721)
++.++.. +..-...+..+...+++++|.+.+..++... -+.+-..|..+-....+.-+. -....+++
T Consensus 162 rRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 9998754 4446677788899999999999998886431 134445676666655544332 23344555
Q ss_pred HHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004976 197 DMEAVGCCPNL--ITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGIS 274 (721)
Q Consensus 197 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 274 (721)
.+... -+|. ..|++|+.-|++.|.+++|..+|++.... .....-|..+...|.+-..-.-+..+ +...+.+..
T Consensus 238 ~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n 312 (835)
T KOG2047|consen 238 GGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGN 312 (835)
T ss_pred hhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccC
Confidence 55443 3554 47999999999999999999999999875 22455566666666543221111111 000001111
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004976 275 P-NVVTYNSLMHCLCKIGQWKEAIAMLDAMMER-----------GIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKG 342 (721)
Q Consensus 275 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 342 (721)
+ +... ++-...-|+.+... .-+.++..|..-.. ...|+..+-...|.++++.
T Consensus 313 ~ed~~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~- 376 (835)
T KOG2047|consen 313 EEDDVD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT- 376 (835)
T ss_pred hhhhhh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-
Confidence 1 1111 11111122222211 01112333433332 2355566666666666654
Q ss_pred CCC------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 004976 343 EKL------SVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD---VVSYNTLLMGIGKFGKVDEALELFNLVLKEEK 413 (721)
Q Consensus 343 ~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 413 (721)
+.| -...|..++..|-..|+.+.|..+|++..+...+-- ..+|...+.+-.+..+++.|+++++.+...+.
T Consensus 377 vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 377 VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 111 124566667777777777777777777766533211 23455555556666777777777776654321
Q ss_pred CC---------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 414 YV---------------QLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWK 478 (721)
Q Consensus 414 ~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (721)
.. ..+...|...+...-..|-++....+|+++++..+ .++......+..+-.+.-++++.++|+
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 10 01234566666666778889999999999988763 355555555555666777899999999
Q ss_pred HHHHcCCCCCH-HHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 479 HLLELGHVPNS-VTYSSMIDGFC---KIGMLNIAKGIFSKMRVSGNDPTLF--DYNALMASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 479 ~~~~~~~~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~ 552 (721)
+-+..-..|+. ..|+..+.-+. .....+.|..+|+++++. .+|... +|...+..-.+-|-...|+.+++++..
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88876544543 45555554443 234689999999999984 444432 233333333456888999999999876
Q ss_pred cCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHhHHHHHHHHHHHC-CCC
Q 004976 553 ANCEPDV--VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTY---STLIHRFLRFGLLSDAKSVYQKMVAS-GHK 626 (721)
Q Consensus 553 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 626 (721)
. +++.. ..|+..+.--...=-+..-.++|+++++. -|+...- ...+..-.+.|..+.|+.+|.-..+. +..
T Consensus 615 ~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 615 A-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 3 23322 35665554333222355667888888884 4655433 33455567889999999999887765 335
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHH
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
.+...|...-.--.++|+-+...+++
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57788998888889999955444443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-13 Score=128.92 Aligned_cols=364 Identities=12% Similarity=0.075 Sum_probs=202.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHH
Q 004976 309 RPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD--VVSYN 386 (721)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 386 (721)
..|...+...+..+.+.|....|++.+...+.. .|-....|..|..... +.+ ....... +.+.| ...-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHH----HHHHHHh-cCcccchHHHHH
Confidence 335555555556666777777777777777654 3445555555544332 111 1111111 11111 11112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHH
Q 004976 387 TLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISG---NLVTFNILIGK 463 (721)
Q Consensus 387 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~ 463 (721)
.+..++......++++.-...... .+++.+...-+..+.+.....+++.|+.+|+++.+.+ |- |..+|..++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~--~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSS--VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH
Confidence 333445555566666666666555 3344444445555555666677777777777776653 22 33444443322
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 464 YLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQA 543 (721)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 543 (721)
+..+ ..+..+.+-.-.-.+--+.+.-.+++.|.-.++.++|..+|+++++.++. ....|..++.-|...++...|
T Consensus 309 --~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 2111 11122221111101112334445556666666777777777777766322 355666667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 544 KRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+.-|+++++.+ +.|...|..|+.+|.-.+...=|+-+|+++.+.. |.|...|..|+.+|.+.++.++|++.|.+++..
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 77777777654 3356677777777777777777777777777753 455667777777777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCchhhHhhHHHHHHh
Q 004976 624 GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADK----GVHLD-QELTSTILVCLCNISEDLDVAKLFPTFSQ 692 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 692 (721)
| ..+...+..++.+|.+.++.++|...+++.++. |...+ ..-....+..+....++.+.+......+.
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 5 445566777777777777777777777766652 22222 23333444445555555555555443333
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.6e-15 Score=137.89 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=149.5
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 392 IGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIID 471 (721)
Q Consensus 392 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (721)
+.-.|+.-.|.+-|+.++..++. +...|..+..+|....+.++....|+.+...+ +.++.+|..-+..+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~---~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA---FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc---cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 34457777777888877764332 23336667777788888888888888887776 567777777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 472 KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIR 551 (721)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 551 (721)
+|..-|++.+...+. +...|..+.-+..+.++++++...|++..+. ++..+..|+..+..+..++++++|.+.|+.++
T Consensus 412 ~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 888888888776544 5666666666667777888888888887776 34356777777888888888888888888777
Q ss_pred HcCCCCC-------HHHH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 552 NANCEPD-------VVSF--NTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 552 ~~~~~~~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
... |+ ...+ ..++ ...-.+++..|.+++.++++. .|.. ..+..|+....++|+.++|+++|++..
T Consensus 490 ~LE--~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELE--PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhc--cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 632 32 1111 1111 111236677777777777763 3433 466677777777777777777777765
Q ss_pred HC
Q 004976 622 AS 623 (721)
Q Consensus 622 ~~ 623 (721)
..
T Consensus 565 ~l 566 (606)
T KOG0547|consen 565 QL 566 (606)
T ss_pred HH
Confidence 53
No 41
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.1e-13 Score=124.42 Aligned_cols=470 Identities=14% Similarity=0.102 Sum_probs=225.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 004976 214 MDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQW 293 (721)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 293 (721)
+.++.+.|++++|...+..+.+. -.++...+..|+-++.-.|.+.+|..+-.+..+ ++.....+.....+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcH
Confidence 34444555555555555554442 233444455555555555555555554433221 222233333334444444
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHH
Q 004976 294 KEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYN-VLIKGLCQKGLVGEAYEILNM 372 (721)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~ 372 (721)
++-..+-+.+.+. ...-.+++......-.+.+|+++|.+++..+. .-...+ .++-+|.+..-++-+.+++.-
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~--ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP--EYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 4444444333321 12222333333333445555555555554321 111111 233344455555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHH
Q 004976 373 MIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK-----EDRLDEAVKIYHTMAE 447 (721)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~ 447 (721)
.++. ++.++...+..+....+.=+-..|..-...+... ...-...+.-+++ -.+-+.|++++-.+..
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN-------~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADN-------IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc-------ccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 4443 2222333332222222221112222222222210 0000111111121 1234555555554443
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCC
Q 004976 448 RGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM-------LNIAKGIFSKMRVSGN 520 (721)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~ 520 (721)
. -+.....++-.|.++++..+|..+.+++.- . ++.-|..-+-.+...|+ ..-|.+.|+-.-.++.
T Consensus 283 ~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---t-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H----IPEARLNLIIYYLNQNDVQEAISLCKDLDP---T-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h----ChHhhhhheeeecccccHHHHHHHHhhcCC---C-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 2 223334455556677777777766655431 1 22222222223333332 3345555555544444
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004976 521 DPT-LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYST 599 (721)
Q Consensus 521 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 599 (721)
..| +.--.+++.++.-..++++++.++..+...-...|. ....++.++...|++.+|.++|-++....++.+...-..
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 333 223345555555566778888888777764333333 333467778888888888888877766444433444456
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHH
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTS-------TILV 672 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~ll~ 672 (721)
|+++|.+.++.+-|..++-++-.. ......+..++.-|++.+++--|.+.|+.+-. +.|++..|. -++.
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG~f~ 509 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAGLFR 509 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHHHHH
Confidence 777888888888887777665321 11223444556668888888777777777665 556555543 2333
Q ss_pred HHHhcCchhhHhhHHHHHHhc-cCCCCcccHHHHHHHHhhccccccc
Q 004976 673 CLCNISEDLDVAKLFPTFSQE-TSKGKSISCKDLLLKLQEYHPELRL 718 (721)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 718 (721)
.++....+.-...-+.+.+.. +..+++ +|+.++-..++|...+++
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr~~~ns-q~E~mikvvrkwa~~~~v 555 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLRMKPNS-QCEFMIKVVRKWAETHNV 555 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHhcCC
Confidence 333322222233333333332 233443 788888888888776554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-14 Score=135.77 Aligned_cols=79 Identities=16% Similarity=0.017 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
.+++|++|+++|++++...|. .+..|.....+|...|+|++.++-...+++.+ |....++.+..+++-+.|++++|+.
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHHH
Confidence 356788888888888776533 25556667777777788888888888877765 5556677777777777887777754
Q ss_pred H
Q 004976 124 V 124 (721)
Q Consensus 124 ~ 124 (721)
-
T Consensus 205 D 205 (606)
T KOG0547|consen 205 D 205 (606)
T ss_pred h
Confidence 3
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-13 Score=131.22 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=214.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHH
Q 004976 344 KLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYN 423 (721)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 423 (721)
..+........+-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+-.+++...| ....+|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP---~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP---SKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC---CCCcchh
Confidence 3356666677777888889999999998888763 33444444445577777877776666666665433 4677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004976 424 NLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIG 503 (721)
Q Consensus 424 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 503 (721)
.++--|...|+..+|.+.|.+....+ +.-...|...+..|.-.+..++|...+..+.+.-+. ....+.-++.-|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 88888888899999999998887764 334567888899999999999999998888776322 3333444555678889
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCCHHH
Q 004976 504 MLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA----N--CEPDVVSFNTMINGTLKAGDLQS 577 (721)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~ 577 (721)
+...|.++|.++.... +.|+.+.+.++-...+.+.+.+|..+|+..+.. + ......+++.|+.+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999888763 346778888888888889999999999887731 1 11144578899999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004976 578 ARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLL 636 (721)
Q Consensus 578 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 636 (721)
|+..+++.+... +.+..++..++-+|...|+++.|++.|.+++.. .|+..+-..++
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL 529 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 999999999874 778889999999999999999999999999875 55554443333
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-15 Score=148.92 Aligned_cols=292 Identities=14% Similarity=0.101 Sum_probs=225.1
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHH
Q 004976 360 KGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAV 439 (721)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 439 (721)
.-+..+|+..|..+..+ +.-...+...++.+|...+++++|.++|+.+....+....+..+|...+.-+- +.-+--
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHH
Confidence 34567888888885554 33345777888889999999999999999988876665566677766654332 212222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 440 KIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSG 519 (721)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 519 (721)
-+-+.+.... +..+.+|..++.+|.-+++++.|++.|+++++.++. ...+|..++.-+.....+|.|...|+.++...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2334455544 667899999999999999999999999999987543 67777878877888888999999999888652
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004976 520 NDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYST 599 (721)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 599 (721)
+. +-..|..++..|.++++++.|.-.|+++++.+ +.+.+....++..+.+.|+.++|+++++++...+ +.|+..-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 21 34466778888999999999999999998865 2355677778888899999999999999999875 556666677
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
.+..+...+++++|...++++.+. .+.+...+..++..|.+.|+.+.|+..|--|.+ +.|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCc
Confidence 788888899999999999999886 466677888899999999999999999988887 5553
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.3e-12 Score=117.49 Aligned_cols=447 Identities=13% Similarity=0.103 Sum_probs=254.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 004976 37 LRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQ 116 (721)
Q Consensus 37 l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 116 (721)
|..++. +.+|..|+.+++-....+.+....+-.+++.++++.|+|++|...|.-+...+ .++...+..++-+..-.|
T Consensus 29 Ledfls--~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLS--NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHh--cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 455565 56899999999988876655455667778999999999999999999988765 567778888888888899
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 117 KPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILP 196 (721)
Q Consensus 117 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 196 (721)
.+.+|.++-..+ +.++.....+...-.+.++-++-....+.+-+. ..--.+|.......-.+.+|++++.
T Consensus 106 ~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999998887766 334444455555556677766665555554432 2233345555444556889999999
Q ss_pred HHHhCCCCCCHhhHHH-HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004976 197 DMEAVGCCPNLITYST-LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISP 275 (721)
Q Consensus 197 ~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 275 (721)
++...+ |+-...+. +.-+|.+..-++-+.+++.-.+.. ++.+..+.+..+....+.=+-..|.+-...+.+.+ ..
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~ 251 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQ 251 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cc
Confidence 988753 55444443 445667777788888888877765 34355555555555544433334444444444432 10
Q ss_pred CcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004976 276 NVVTYNSLMHCLCKI-----GQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITY 350 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 350 (721)
. | ..+.-.++. .+-+.|++++-.+.+. -+.+-..++--|.+.++..+|..+.+++. |.++.-|
T Consensus 252 ~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 252 E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 1 1 122222222 3456777777666653 23445566667778888888887776652 2233333
Q ss_pred HHHHHHHHhcCC-------HhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhH
Q 004976 351 NVLIKGLCQKGL-------VGEAYEILNMMIEKGMMPDVV-SYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTY 422 (721)
Q Consensus 351 ~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 422 (721)
..-+-.+...|+ ..-|.+.|...-+.+..-|.. ....+...+.-..++++.+.++..+.. .+..|...-
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s---YF~NdD~Fn 396 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES---YFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchhh
Confidence 332223333332 334444444333333222211 122233333334455666555555442 122333344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh
Q 004976 423 NNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTY-SSMIDGFCK 501 (721)
Q Consensus 423 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 501 (721)
..++++++..|++.+|+++|-++....++.+..-...++++|.+.+.++.|..++-.+ +-+.+.... ..+...|.+
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK 473 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH
Confidence 4566666666666666666666554333323333344556666666666665443322 212122222 223344555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004976 502 IGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 502 ~g~~~~A~~~~~~~~~~ 518 (721)
.+.+--|.+.|+.+...
T Consensus 474 ~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHHhhhHHHcc
Confidence 66665555566555554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.1e-15 Score=147.25 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=190.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHhcCChhHHHHH
Q 004976 82 NYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYAFNLILKGFCRKGEVNKAIEL 159 (721)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 159 (721)
++.+|+..|+. +..+.......+..++++|...+++++|..+|+.+.+..+- .+-++|..++..+- + +-++..
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 56777777777 44444555566677777777777777777777777655322 23455555554332 1 122222
Q ss_pred H-HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCC
Q 004976 160 F-GEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGL 238 (721)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 238 (721)
+ +.+.+.+ +..+.+|..++.+|.-+++++.|++.|++....+ +....+|+.++.-+....++|.|...|+.++...+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 3333332 4566778888887777788888888887777763 22556777777777777777888888877776543
Q ss_pred CCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004976 239 DADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCL 318 (721)
Q Consensus 239 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (721)
. +-.+|..++..|.+.++++.|+-.|+++.+.++ .+.+....++..+.+.|+.++|+++++++...+.. |+-.....
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 3 556677777777788888888777777777642 25566666777777777777777777777765322 55555666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 319 IEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKG 377 (721)
Q Consensus 319 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 377 (721)
+..+...+++++|+..++++.+. .|.+..++..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66677777777777777777765 45566677777777777777777777777766653
No 47
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.3e-12 Score=119.06 Aligned_cols=436 Identities=17% Similarity=0.216 Sum_probs=238.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH--HHHhcCChhHH-HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 114 QTQKPKFALGVIGLILKRGFVVNIYAFNLILK--GFCRKGEVNKA-IELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKE 190 (721)
Q Consensus 114 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 190 (721)
.+|...++.-+|+.+...|.+.++.+...+.. .|..+.++--| .+.|-.|.+.| ..+..+| +.|...+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 45666666667777766666666555444433 22223332222 23344444443 2233333 2333322
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 191 ALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 191 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
-+|+.. +....++..+|.++++--..+.|.+++++........+..+|+.+|.+-. +....++..+|..
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHH
Confidence 122211 23455667777777777677777777777666655666666666665432 2222566667776
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHC--C-
Q 004976 271 KGISPNVVTYNSLMHCLCKIGQWKE----AIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATK-AIDLLNWMVKK--G- 342 (721)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~--~- 342 (721)
..+.||..|+|.++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.++..+ +..++.++... |
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 6667777777777777777776654 45566666777777777777777776666665532 44444444332 1
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 004976 343 -----EKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK----GMMPD---VVSYNTLLMGIGKFGKVDEALELFNLVLK 410 (721)
Q Consensus 343 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 410 (721)
.+.+...|...+..|....+.+-|.++-.-+... -+.|+ ..-|..+....+.....+.-...|+.++.
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1224445555666666667766666665544432 12233 22355566667777777888888888775
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004976 411 EEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSV 490 (721)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 490 (721)
.-.-|+..+...++++..-.+.++-.-+++..+...|...+.... .+++..+....+.|+..
T Consensus 427 --~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp 488 (625)
T KOG4422|consen 427 --SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTP 488 (625)
T ss_pred --ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCCh
Confidence 445577777777777777777777777777777765522222211 22333333333333322
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH---H
Q 004976 491 TYSSMIDGFCKI--GMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNAN-CEPDVVSFN---T 564 (721)
Q Consensus 491 ~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~---~ 564 (721)
.-..+-....++ .-.+.....-.++.+. +......+.++-.+.+.|..++|.+++..+.+.+ --|-....+ .
T Consensus 489 ~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 489 EREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111111111111 1111111222233333 3344555666667777777888877777775532 122233333 4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 004976 565 MINGTLKAGDLQSARELYNNMLQMG 589 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~~ 589 (721)
++......++...|+.+++-|...+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5555566677777777777776654
No 48
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=8e-12 Score=115.53 Aligned_cols=240 Identities=18% Similarity=0.277 Sum_probs=145.2
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 134 VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTL 213 (721)
Q Consensus 134 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 213 (721)
+..+..+..++.++++--..+.|..++++........+..++|.+|.+-. +....+++.+|......||..|+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 44566777777777777777777777777766555667777777776532 22226677777777777777777777
Q ss_pred HHHHHhcCChhHH----HHHHHHHhHCCCCCCccchHHHHHHHHhcCChhH-HHHHHHHHHh----CCCC---C-CcchH
Q 004976 214 MDGLCKDGRVDEA----MGLLEEMKAKGLDADVVVYSALISGFCSNGSFDK-GKKLFDDMLE----KGIS---P-NVVTY 280 (721)
Q Consensus 214 ~~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~~---~-~~~~~ 280 (721)
+.+..+.|+++.| .+++.+|++.|+.|...+|..++..+.+.++..+ |..++.++.. +.+. | +...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 7777777766543 4566667777777777777777777777666533 3444444332 1111 2 22234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004976 281 NSLMHCLCKIGQWKEAIAMLDAMMERG----IRPD---VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVL 353 (721)
Q Consensus 281 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (721)
...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.++-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 445555556666666666554433211 1222 122344555556666666666677666655445566666666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 354 IKGLCQKGLVGEAYEILNMMIEKG 377 (721)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~ 377 (721)
+++....|.++-.-+++.++...|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 666666666666666666666543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=7e-14 Score=141.21 Aligned_cols=292 Identities=10% Similarity=0.066 Sum_probs=202.9
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCCh
Q 004976 357 LCQKGLVGEAYEILNMMIEKGMMPDV-VSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRL 435 (721)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (721)
....|+++.|.+.+.+..+.. |++ ..+..........|+.+.|.+++.++.+..+. +...........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHHHHCCCH
Confidence 345788888888887776643 333 33344456677778888888888887653221 1112333346777788888
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHhcCCHHHHHHH
Q 004976 436 DEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYS-SMID---GFCKIGMLNIAKGI 511 (721)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~ 511 (721)
+.|...++.+.+.. |.++..+..++..+...|+++.|.+.+..+.+.+.. +...+. .... .....+..+++.+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888875 567777888888888888888888888888887644 333221 1111 11233333444455
Q ss_pred HHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHH
Q 004976 512 FSKMRVSGND---PTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVS---FNTMINGTLKAGDLQSARELYNNM 585 (721)
Q Consensus 512 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 585 (721)
+..+....+. .+...+..++..+...|++++|.+.+++..+.. ||... ...........++.+.+++.+++.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 5555554221 367788888889999999999999999998854 44431 122222234567888999999998
Q ss_pred HhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 586 LQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 586 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.. +.|+ .....+++.+.+.|++++|.+.|+++......|+...+.+++..+.+.|+.++|.+++++.+.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8853 4445 566789999999999999999999644433478888888999999999999999999998754
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=7.4e-14 Score=140.12 Aligned_cols=285 Identities=13% Similarity=0.021 Sum_probs=145.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 004976 80 SKNYEYAFSVYSKMTCVHIFPSFLSL-SGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIE 158 (721)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 158 (721)
.|+|++|++......... +++..+ ........+.|+++.|...+..+.+..+.............+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555544321 122222 22233335566666666666655543222111111122445555566666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCChhHHHHHHH
Q 004976 159 LFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNL-------ITYSTLMDGLCKDGRVDEAMGLLE 231 (721)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 231 (721)
.++++.+.+ |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666655553 334445555555566666666666666655554322111 122222333333334444444444
Q ss_pred HHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004976 232 EMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD 311 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (721)
.+.+. .+.++.....++..+...|+.++|.+++++..+. +|+.... ++......++.+++++.++...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 44332 2235556666666666666666666666666653 3333211 2222334466666666666666542 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIE 375 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 375 (721)
+.....++..+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445556666666666666666666666654 34555556666666666666666666666543
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=7.7e-14 Score=140.91 Aligned_cols=295 Identities=14% Similarity=0.034 Sum_probs=178.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+......|+++.|.+.+.+..+.. +.+...+...+.+..+.|+++.|.+.+..+.+..+.+...+.......+...|++
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 334455677777777777766643 3333444555666777777777777777776544333333344446666777777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHHhcCChhHHHHH
Q 004976 154 NKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYS----TLMDGLCKDGRVDEAMGL 229 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~A~~~ 229 (721)
+.|...++.+.+.. |.+..++..+..++...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777777764 445556667777777777777777777777766532 222221 111111222333333344
Q ss_pred HHHHhHCCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 230 LEEMKAKGLD---ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVT---YNSLMHCLCKIGQWKEAIAMLDAM 303 (721)
Q Consensus 230 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 303 (721)
+..+.+..+. .+...+..++..+...|+.++|.+++++.++.. |+... ...........++.+.+++.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 4444443221 266677777777777777777777777777752 33221 111112223346677777777777
Q ss_pred HHCCCCCC-h--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 304 MERGIRPD-V--VTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIE 375 (721)
Q Consensus 304 ~~~~~~~~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 375 (721)
.+. .|+ + .....++..+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.++|++...
T Consensus 326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 664 233 4 455677777778888888888877433333355666677777888888888888888877644
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=1.2e-10 Score=113.87 Aligned_cols=472 Identities=16% Similarity=0.124 Sum_probs=310.8
Q ss_pred CCcchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 29 PQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGL 108 (721)
Q Consensus 29 ~~~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 108 (721)
|+....-+.+.+-.-.+++|...+++.+.+++..+. ..++....+-.+...|+-++|....+..++.+ +.+...|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHH
Confidence 334344444555555678999999999999986655 56777777888888999999999999999875 6788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 109 IEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 109 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 188 (721)
+-.+....++++|++.|..+++.+ +.|..++.-+.-.-.+.|+++.....-.+..+.. +.....|..+..++.-.|++
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 4588888888777788899998888887777762 34556788888888899999
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHH------HHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHH
Q 004976 189 KEALDILPDMEAVG-CCPNLITYSTLM------DGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKG 261 (721)
Q Consensus 189 ~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 261 (721)
..|..+++...+.. ..|+...+.... ......|.+++|.+.+...... +-.....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887754 245555443322 3455678888887777655443 221333344556778899999999
Q ss_pred HHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHH
Q 004976 262 KKLFDDMLEKGISPNVV-TYNSLMHCLCKIGQWKEAI-AMLDAMMERGIRPDVVTYTCLIEGLCKGGR-ATKAIDLLNWM 338 (721)
Q Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 338 (721)
..++..++..+ ||.. .|..+..++.+..+.-+++ .+|....+. .|.......+--....... .+..-.++...
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 99999999873 4544 4445555554333333344 566555543 2222221111111112222 33444566666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHHhccCCHHHHH
Q 004976 339 VKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIE----KG----------MMPDVV--SYNTLLMGIGKFGKVDEAL 402 (721)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~~~~~~A~ 402 (721)
.+.|+++- +..+...|-.-...+-..++...+.. .| -+|.+. ++..++..+-..|+++.|.
T Consensus 315 l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 77776643 33333333222211111111111111 11 134444 3445667788899999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 403 ELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLE 482 (721)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 482 (721)
.+++.++...| .-...|..-++++...|++++|..++++..+.+ .+|...-..-+.-..+.+..++|.++.....+
T Consensus 392 ~yId~AIdHTP---TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 392 EYIDLAIDHTP---TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHhccCc---hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 99999986322 234455566788889999999999999998876 44555444667777888999999999988887
Q ss_pred cCCCC--C----HHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 004976 483 LGHVP--N----SVTYS--SMIDGFCKIGMLNIAKGIFSKMR 516 (721)
Q Consensus 483 ~~~~~--~----~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 516 (721)
.|... + .-.|. .-+.+|.+.|++..|+.-|..+.
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 76310 0 01122 22456777777777776665553
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.5e-16 Score=152.54 Aligned_cols=261 Identities=16% Similarity=0.167 Sum_probs=87.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVH-IFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRK 150 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (721)
.++..+.+.|++++|++++.+..... .+.+...|..++......++++.|...++.++..+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777777777777777775544433 2445555666666667777777777777777665433 55556666555 577
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 151 GEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG-CCPNLITYSTLMDGLCKDGRVDEAMGL 229 (721)
Q Consensus 151 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~ 229 (721)
+++++|..+++...+. .++...+..++..+...++++++..+++++.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777666554 3455566666666777777777777777765432 234555666667777777777777777
Q ss_pred HHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004976 230 LEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIR 309 (721)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 309 (721)
++++++..+. +..+...++..+...|+.+++..++....+.. +.|...+..++.++...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777776444 56666677777777777777777776666543 3355566667777777777777777777766642 2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004976 310 PDVVTYTCLIEGLCKGGRATKAIDLLNWMV 339 (721)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 339 (721)
.|+.....++.++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 256666677777777777777777666554
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-11 Score=123.38 Aligned_cols=436 Identities=12% Similarity=0.065 Sum_probs=264.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHH
Q 004976 204 CPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPN-VVTYNS 282 (721)
Q Consensus 204 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 282 (721)
..+...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++........|+ ...+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 346667777777777888888888888887764333 666777888888888888888888777665532233 223333
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCC
Q 004976 283 LMHCL-CKIGQWKEAIAMLDAMMER--GI--RPDVVTYTCLIEGLCKG-----------GRATKAIDLLNWMVKKGEKLS 346 (721)
Q Consensus 283 l~~~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 346 (721)
....| .+.+..++++++-.++... +. ...+..+..++-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 33333 3446666766666666551 11 11233344444444321 1234566777777666433 4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHH
Q 004976 347 VITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLI 426 (721)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 426 (721)
+.+...+.--|..+++.+.|.+..++..+.+...+...|..++-++...+++.+|+.+.+.++.+.+ .|......-+
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~ 554 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKI 554 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhh
Confidence 4555555666777777888888888777775555677777777777777888888888777776432 1222222223
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC-
Q 004976 427 QGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLEL--GHVPNSVTYSSMIDGFCKIG- 503 (721)
Q Consensus 427 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g- 503 (721)
..-...++.+++......+... |...- .....++-.........+.-. .+.....++..+.......+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 3333456666666665555431 00000 000011111111111111100 11111222222222111111
Q ss_pred --CHHHHHHHHHHHHHcCC--CCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004976 504 --MLNIAKGIFSKMRVSGN--DPT------LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAG 573 (721)
Q Consensus 504 --~~~~A~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 573 (721)
..+.. +..... .|+ ...|...+..+.+.+..++|...+.++.+.. +-....|...+..+...|
T Consensus 626 ~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 626 SAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 01111 111111 122 1245566677888899999998888888743 335567888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 004976 574 DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKS--VYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDL 651 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 651 (721)
+..+|.+.|..+...+ |.+......++.++...|+..-|.. ++..+++.+ +.+.+.|..++..+.+.|+.++|.+.
T Consensus 699 ~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999999853 3345788999999999998777777 999999987 78899999999999999999999999
Q ss_pred HHHHHHcCCCCCH
Q 004976 652 IHEMADKGVHLDQ 664 (721)
Q Consensus 652 ~~~~~~~~~~p~~ 664 (721)
|.-+.+ +.++.
T Consensus 777 f~aa~q--Le~S~ 787 (799)
T KOG4162|consen 777 FQAALQ--LEESN 787 (799)
T ss_pred HHHHHh--hccCC
Confidence 999987 55543
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=3e-16 Score=150.56 Aligned_cols=262 Identities=18% Similarity=0.197 Sum_probs=108.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004976 387 TLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLT 466 (721)
Q Consensus 387 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (721)
.+...+...|++++|++++....... ..+.+...|..++......++++.|+..++++...+ +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccccccccccccc-cc
Confidence 44666667777777777775443311 012344555556666667788888888888887764 3355566666666 67
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 004976 467 AGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSG-NDPTLFDYNALMASLCKESSLEQAKR 545 (721)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 545 (721)
.+++++|..+++...+.. ++...+...+..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888887776543 455666777778888888888888888876542 23466778888888889999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 546 LFIEIRNANCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 546 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
.++++++.. | |......++..+...|+.+++.++++...+.. +.|+..+..++.++...|+.++|...++++....
T Consensus 168 ~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998865 4 46677888888889999999888888887753 5667778888999999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 625 HKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.|+.....++.++...|+.++|.++.+++.+
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -TT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 67888889999999999999999999888764
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.2e-13 Score=120.13 Aligned_cols=289 Identities=16% Similarity=0.204 Sum_probs=202.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHhHHHHHHHHHhcCChhH
Q 004976 80 SKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN----IYAFNLILKGFCRKGEVNK 155 (721)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 155 (721)
..+.++|+..|-+|++.+ +....+-..+++.+.+.|..+.|+.+++..++. +..+ ..+...+++-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 456777777777777654 455556667777777777777777777776643 2211 2355667778888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHH
Q 004976 156 AIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI----TYSTLMDGLCKDGRVDEAMGLLE 231 (721)
Q Consensus 156 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~ 231 (721)
|+.+|..+.+.+ ..-..+...|+..|....+|++|+++-+++.+.+..+... .|.-+...+....+++.|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888754 3344567778888888888888888888888776443322 45666677777788888888888
Q ss_pred HHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004976 232 EMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD 311 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (721)
++.+.++. .+.+-..+++.+...|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+. .+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 88887555 666677788888888999999999888888754433556777888888889998888888888875 334
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHHC
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQK---GLVGEAYEILNMMIEK 376 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 376 (721)
......+........-.+.|...+.+-+.. .|+...+..++...... |...+.+..++.|...
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444445555444555566666666665554 56788888888776543 3455556666666543
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.4e-13 Score=120.90 Aligned_cols=289 Identities=17% Similarity=0.132 Sum_probs=228.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH--hhHHHHHHHHHhcCChhHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVH-IFPSF--LSLSGLIEVFVQTQKPKFA 121 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A 121 (721)
..+.+.|+..|-.++..++. +.++...+++.+.++|..+.|+++.+....+. .+.+. .+...+++-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34668999999999998766 89999999999999999999999999998762 22222 3467888999999999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 122 LGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNC----SYNTIVNGLCKAKRFKEALDILPD 197 (721)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 197 (721)
..+|....+.+ ..-..+...++..|-...+|++|+.+-+++.+.+-.+... -|..+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999997653 4466788899999999999999999999999876443322 244455555667889999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 004976 198 MEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNV 277 (721)
Q Consensus 198 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 277 (721)
..+.+ +..+..-..+++.....|++..|++.++.+.+.++..-..+...|..+|.+.|+.++....+.++.+. .++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 98875 33555666788899999999999999999999877777788889999999999999999999999886 3455
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 004976 278 VTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCK---GGRATKAIDLLNWMVK 340 (721)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 340 (721)
..-..+........-.+.|...+.+-+.. +|+...+..++..... .|...+.+..++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 55555555555555567777766665554 6898888888887654 3445566666666654
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.1e-13 Score=133.56 Aligned_cols=284 Identities=12% Similarity=0.068 Sum_probs=198.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHH
Q 004976 114 QTQKPKFALGVIGLILKRGFVVNIYAFNLI-LKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYN--TIVNGLCKAKRFKE 190 (721)
Q Consensus 114 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 190 (721)
..|+++.|.+......+.. +++..+..+ +....+.|+++.|...+.++.+. .|+..... .....+...|++++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3688888887777764432 233334333 44447888888888888888775 45543322 33567778888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCc-------cchHHHHHHHHhcCChhHHHH
Q 004976 191 ALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADV-------VVYSALISGFCSNGSFDKGKK 263 (721)
Q Consensus 191 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 263 (721)
|...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887765 445667777888888888888888888888876544221 133344444444555666666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004976 264 LFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGE 343 (721)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 343 (721)
+++.+.+. .+.++.....++..+...|+.++|..++++..+. +++.... ++.+....++.+++++..+...+. .
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-H 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-C
Confidence 66665443 2346667778888888888888888888888774 4444322 233334558888888888888776 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 004976 344 KLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLK 410 (721)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 410 (721)
|.++..+..++..+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557777888888888888888888888888874 57777777888888888888888888888764
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=7.7e-11 Score=115.23 Aligned_cols=451 Identities=15% Similarity=0.153 Sum_probs=235.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 149 RKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMG 228 (721)
Q Consensus 149 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 228 (721)
..+++...++..+.+++. .+....+....+-.+...|+.++|....+...... ..+.+.|..++-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 455566666666666553 23333444444444555566666666665555433 2244556666655555666666666
Q ss_pred HHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004976 229 LLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGI 308 (721)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 308 (721)
.|..+...+.. |...+.-+.-.-.+.++++.....-....+.. +.....|..++.++.-.|+...|..+++...+...
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666655433 55555555555555666666555555555441 11334555666666666666666666666655421
Q ss_pred -CCChhhHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 004976 309 -RPDVVTYTCL------IEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD 381 (721)
Q Consensus 309 -~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (721)
.|+...+... .......|..+.|.+.+...... +......-..-+..+.+.+++++|..+|..++.. .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 2333322221 12234456666666655544332 1112223334456667777777777777777765 244
Q ss_pred HHHHHHHH-HHHhccCCHHHHH-HHHHHHHhcCCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhhHH
Q 004976 382 VVSYNTLL-MGIGKFGKVDEAL-ELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDR-LDEAVKIYHTMAERGISGNLVTFN 458 (721)
Q Consensus 382 ~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 458 (721)
...|...+ .++....+.-++. .+|....+..+. ......+--......+ .+...+++....+.|+|+-...+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r----~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR----HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc----cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 44443333 3333233333333 555554432221 1111111111112122 233344555666666554332222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-------H-cC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 459 ILIGKYLTAGIIDKALEMWKHLL-------E-LG----------HVPNSVT--YSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~-------~-~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
..|-... ++- ++++.+ . .+ -+|.... +..++..+-..|+++.|..+++.++..
T Consensus 328 ---SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 328 ---SLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred ---HHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2221111 111 222211 0 00 0233333 344566677888888888888888766
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--CC--
Q 004976 519 GNDPT-LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLP--PD-- 593 (721)
Q Consensus 519 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~-- 593 (721)
.|+ +..|..-++.+...|++++|..++++..+.+ .+|...-..-+....++++.++|.++.....+.|.. .+
T Consensus 401 --TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~ 477 (700)
T KOG1156|consen 401 --TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA 477 (700)
T ss_pred --CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH
Confidence 555 4456666777888888888888888888755 345554445666667788888888888887776531 00
Q ss_pred -hh-hHHH--HHHHHHhcCCHhHHHHHHHHH
Q 004976 594 -AL-TYST--LIHRFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 594 -~~-~~~~--l~~~~~~~g~~~~A~~~~~~~ 620 (721)
.. .|.. =+.+|.++|++..|++-|..+
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 11 2222 245677777777776554443
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.7e-11 Score=109.03 Aligned_cols=317 Identities=11% Similarity=0.017 Sum_probs=242.0
Q ss_pred HHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCC
Q 004976 356 GLCQKGLVGEAYEILNMMIEK-GMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDR 434 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 434 (721)
+.+-.++...+...+-.+... .++-|......++.++...|+.++|+-.|++..-.++. ........+-.+.+.|+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy---~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD---NVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh---hhhhHHHHHHHHHhccC
Confidence 334455555555555444433 24556677888899999999999999999998764432 23333344445677888
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 435 LDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSK 514 (721)
Q Consensus 435 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 514 (721)
+++-..+...+.... ......|..-+......++++.|+.+-++.++.+.. +...+..-+..+...|+.++|.-.|+.
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence 888888888876643 234555665666677789999999999999987654 677788888889999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-cCCCHHHHHHHHHHHHhCCCCC
Q 004976 515 MRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMI-NGTL-KAGDLQSARELYNNMLQMGLPP 592 (721)
Q Consensus 515 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~ 592 (721)
+.... +.+...|..|+.+|...|++.+|.-.-+...+. ++.+..++..++ ..+. ...--++|..++++.+. +.|
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P 435 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INP 435 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCC
Confidence 88763 346889999999999999999998877766553 234556666654 3333 33446889999999988 567
Q ss_pred Ch-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 593 DA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 593 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
+. ...+.++..+...|.+++++.++++.+.. .||......++..+...+.+.+|.+.|..++. +.|.+.....-+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGL 511 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHH
Confidence 64 56778889999999999999999999884 78999999999999999999999999999998 889888887777
Q ss_pred HHHHhcCchhhHhh
Q 004976 672 VCLCNISEDLDVAK 685 (721)
Q Consensus 672 ~~~~~~~~~~~~~~ 685 (721)
.-+-+...+.++.+
T Consensus 512 ~~lEK~~~~~DATd 525 (564)
T KOG1174|consen 512 RLLEKSDDESDATD 525 (564)
T ss_pred HHHHhccCCCCccc
Confidence 77777555555544
No 61
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=2.2e-10 Score=117.31 Aligned_cols=581 Identities=12% Similarity=0.047 Sum_probs=324.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIG 126 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 126 (721)
+...|+..|-+++..++. -...|..|+..|...-+...|.+.|+.+-..+ +.+...+......+.+..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 467788888888887744 66788888888888888888888888888776 6677778888888888888888888744
Q ss_pred HHHHCCCC-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004976 127 LILKRGFV-VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCP 205 (721)
Q Consensus 127 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 205 (721)
..-+..+. .-...|....-.|...++...|+.-|+...+.+ |.|...|..++.+|.+.|++..|+++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 44332211 112344456667778888888888888888775 567788888888888888888888888887765 34
Q ss_pred CHhhHHH--HHHHHHhcCChhHHHHHHHHHhHCC------CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 004976 206 NLITYST--LMDGLCKDGRVDEAMGLLEEMKAKG------LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK------ 271 (721)
Q Consensus 206 ~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 271 (721)
+.. |.. .....+..|.+.+|+..+..+.... -..-..++..+...+...|-..+|...+++.++.
T Consensus 628 ~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 432 222 2233456788888888887775431 0001223333333344445445555555544321
Q ss_pred -CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh---H---HHHHHHHHHHHCCCC
Q 004976 272 -GISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRA---T---KAIDLLNWMVKKGEK 344 (721)
Q Consensus 272 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~~~ 344 (721)
....+...|..+..+ ..+|-... .+ .|+......+..-....+.. + -+.+.+-.-++ ..
T Consensus 707 h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 111122222222222 11221111 00 11111111111101111111 1 01111111111 11
Q ss_pred CCHHHHHHHHHHHHh--------cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 004976 345 LSVITYNVLIKGLCQ--------KGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQ 416 (721)
Q Consensus 345 ~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 416 (721)
.+...|..++..|.+ ..+...|+..+.+.++.. ..+..+|+.+... ...|++.-|.-.|-+.....+
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep--- 847 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP--- 847 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc---
Confidence 124455555555543 123346777777776642 2245566666554 555777777777776665333
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHH
Q 004976 417 LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLEL----GHVPNSVTY 492 (721)
Q Consensus 417 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~ 492 (721)
....+|.++...+....+++.|...|...+... |.+...|......-...|+.-++..+|...-+. |-.++...|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 466778888888888888888888888888765 556667766666666777777777777763322 223444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---------cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHH
Q 004976 493 SSMIDGFCKIGMLNIAKGIFSKMRV---------SGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA-NCEPDVVSF 562 (721)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 562 (721)
..........|+.++-+...+++.. .+.+.....|...+......+.+++|.+...+.... ..+-+...+
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444555566665554443333211 122334556666666666777777776666554320 001122222
Q ss_pred ----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC-HHHHHHHH
Q 004976 563 ----NTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG-HKPN-ACVYDSLL 636 (721)
Q Consensus 563 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~ 636 (721)
...++.+...|.++.|...+...... +..+..- ..+ +....|+++++.+.|++++..- -..+ ......++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~e-vdEdi~g-t~l--~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWME-VDEDIRG-TDL--TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccchh-HHHHHhh-hhH--HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 23445555566666554433322111 0001100 011 1134567777777777776541 1112 23444555
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 004976 637 KGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 637 ~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+....|..+.|...+-+...
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHH
Confidence 566666777777776666654
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-10 Score=115.93 Aligned_cols=441 Identities=13% Similarity=0.049 Sum_probs=203.5
Q ss_pred CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHH
Q 004976 133 FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPN-LITYS 211 (721)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~ 211 (721)
+..++.+|..+.-++.+.|+++.+.+.|++....- .-....|+.+...|...|....|..+++......-.|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34566666666667777777777777777766432 23445677777777777777777777766544321132 22222
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHhHCC----CCCCccchHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 004976 212 TLMDGLC-KDGRVDEAMGLLEEMKAKG----LDADVVVYSALISGFCSN-----------GSFDKGKKLFDDMLEKGISP 275 (721)
Q Consensus 212 ~l~~~~~-~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 275 (721)
.....|. +.+..++++.+-.+++... -......|..++-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 2223333 3455566666555555411 011233344444444321 1133455555555554322
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIK 355 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (721)
|+.....+.--|...++.+.|.+..++..+.+...+...|..++-.+...+++.+|+.+.+..... .+.|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 333333344445555556666666665555543444555555555555556666666655555543 1111111112222
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcC--
Q 004976 356 GLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKED-- 433 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 433 (721)
.-...++.++++.....++.. +. +.... ...++-....+....+.-..+.......++..+.......+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222344445544444443321 00 00000 00000011111111110000000001111111111110000
Q ss_pred -ChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004976 434 -RLDEAVKIYHTMAERGISGNLV-TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGI 511 (721)
Q Consensus 434 -~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (721)
..+.. +....+.|.+. +|... ...|......+.+.+..++|...
T Consensus 627 ~~se~~------Lp~s~~~~~~~~~~~~~----------------------------~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 627 AGSELK------LPSSTVLPGPDSLWYLL----------------------------QKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred cccccc------cCcccccCCCCchHHHH----------------------------HHHHHHHHHHHHhcCCchHHHHH
Confidence 00000 00000011110 01000 22344455555666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHH--HHHHHHhC
Q 004976 512 FSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPD-VVSFNTMINGTLKAGDLQSARE--LYNNMLQM 588 (721)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~ 588 (721)
+.++.... +-....|...+..+...|...+|.+.|..+...+ |+ +.....++.++.+.|+..-|.. ++..+.+.
T Consensus 673 L~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 673 LLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 66555442 2234455555666666667777777666666533 33 3456666666666666555555 66666665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 589 GLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+ +.+...|..++..+...|+.++|.+.|..+...
T Consensus 750 d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 750 D-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred C-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 4 445566777777777777777777777766654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.1e-13 Score=122.95 Aligned_cols=235 Identities=13% Similarity=0.035 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 422 YNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCK 501 (721)
Q Consensus 422 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 501 (721)
-..+..+|.+.|.+.+|.+.++..++. .|-+.+|..+.++|.+..+++.|+.++.+.++.-+ -+........+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHH
Confidence 367888899999999999999888876 57888888899999999999999999998887643 255566667788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004976 502 IGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAREL 581 (721)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 581 (721)
.++.++|.++|+...+.. +.+++....++..|.-.++++-|+.+|+++++.|+. +...|+.++-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999998874 335667777777888889999999999999998864 778899999999999999999999
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 004976 582 YNNMLQMGLPPD--ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKG 659 (721)
Q Consensus 582 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 659 (721)
|+++...--.|+ ..+|.+++......|++.-|.+.|+-++..+ ..+.+.++.|+..-.+.|++++|..++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 999988744454 3689999999999999999999999998875 67788999999999999999999999999887
Q ss_pred CCCCH
Q 004976 660 VHLDQ 664 (721)
Q Consensus 660 ~~p~~ 664 (721)
+.|+-
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 66653
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=1e-12 Score=138.00 Aligned_cols=249 Identities=15% Similarity=0.083 Sum_probs=158.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 004976 81 KNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ---------TQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKG 151 (721)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 151 (721)
+++++|+.+|+++++.+ |.+...+..++.++.. .+++++|...++++++.++ .+..++..++..+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 34667777788777765 5555566666655442 2346778888888877753 36677777777777788
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHH
Q 004976 152 EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNL-ITYSTLMDGLCKDGRVDEAMGLL 230 (721)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~ 230 (721)
++++|+..|+++++.+ +.+...+..+..++...|++++|+..+++....+ |+. ..+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8888888888887764 4456667777777788888888888888877764 332 23333444555677788888888
Q ss_pred HHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 004976 231 EEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPN-VVTYNSLMHCLCKIGQWKEAIAMLDAMMERG-I 308 (721)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 308 (721)
+++.....+.+...+..++.++...|++++|...+.++... .|+ ....+.+...|...| ++|...++.+.+.. .
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77766543334555677777777888888888888776554 222 334445555566666 46666666655431 1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 309 RPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
.+....+ ....+.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1111122 34445556666666555 666554
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.4e-11 Score=113.60 Aligned_cols=288 Identities=14% Similarity=0.063 Sum_probs=209.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 004976 79 RSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIE 158 (721)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 158 (721)
-.|+|.+|++...+..+.+ +.....+..-+.+.-+.|+.+.|-.++.++.+...+++..+.......+...|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999877765 555566777778888999999999999999876445666777778888889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCChhHHHHHHH
Q 004976 159 LFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI-------TYSTLMDGLCKDGRVDEAMGLLE 231 (721)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~A~~~~~ 231 (721)
-++++.+.+ +.+.........+|.+.|++.....++.++.+.+.-.+.. +|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888888875 6677788888899999999999999999998887654443 45555555544444444444555
Q ss_pred HHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004976 232 EMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD 311 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (721)
..... ...++.....++.-+.++|+.++|.++.++.++.+..|+ ....-...+-++.+.-++..++..+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 44332 233566777778888888888888888888887765554 111223445677777777777666642 224
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK 376 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (721)
+..+..++..|.+.+.+.+|...|+..++. .|+...+..++.++.+.|+..+|.++.++....
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 567777888888888888888888876654 567778888888888888888888877776643
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=3.3e-11 Score=111.16 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=235.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004976 38 RLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK 117 (721)
Q Consensus 38 ~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (721)
.++..-..|+|.+|.+...+..+.++. +.-.|..-+.+.-..|+.+.+=++..++.+....+.........+.+...|+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 345555679999999999998887655 5666777788899999999999999999876324445566788888999999
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCCHHH
Q 004976 118 PKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNC-------SYNTIVNGLCKAKRFKE 190 (721)
Q Consensus 118 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~ 190 (721)
+..|..-...+.+.+ +.++.+.....++|.+.|++.....++..+.+.|+-.++. +|..++.-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999886 5588899999999999999999999999999998665553 45555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 191 ALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 191 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
-...++..... .+.++..-..++.-+...|+.++|.++.++..+.+.++. ....-.+.+-++...-++..++..+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 55566555432 244566777888899999999999999999999877655 1222334567888888888888877
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 271 KGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
.. +.++..+..++..|.+.+.|.+|.+.|+...+. .|+..++..+..++.+.|+..+|.+..++.+..
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 63 335678999999999999999999999988875 789999999999999999999999999887754
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.5e-10 Score=108.16 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004976 469 IIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFS--------KMRVSGNDPTLFDYNALMASLCKESSL 540 (721)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 540 (721)
.+..+.+++....+..+.....+....++.....|+++.|++++. .+.+.+.. +.+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 466777777776665444334556666677778888888888887 44444333 33445566667777776
Q ss_pred HHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 004976 541 EQAKRLFIEIRNA--NCEPDVV----SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 541 ~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 614 (721)
+.|..++.++++. .-.+... .+..++..-.+.|+.++|...++++.+.. ++|..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6677777766542 1111212 33334444456788888888888888864 67778888888777665 567776
Q ss_pred HHHHHH
Q 004976 615 SVYQKM 620 (721)
Q Consensus 615 ~~~~~~ 620 (721)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665544
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.2e-10 Score=117.65 Aligned_cols=570 Identities=13% Similarity=0.061 Sum_probs=314.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhH
Q 004976 61 SDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAF 140 (721)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 140 (721)
.+..|+-.+|.+++.-|+..|+.+.|- +|.-|.-.+.+.....+..++....+.++.+.+. .|.+++|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 344567799999999999999999998 9999988888888889999998888888876665 5678899
Q ss_pred HHHHHHHHhcCChhH---HHHHHHHHHh----CCCCCChhhH---------------HHHHHHHHhcCCHHHHHHHHHHH
Q 004976 141 NLILKGFCRKGEVNK---AIELFGEIKS----NGVSPDNCSY---------------NTIVNGLCKAKRFKEALDILPDM 198 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~g~~~~a~~~~~~~ 198 (721)
..+..+|.+.|++.. +.+.++.+.. .|+- ....| ...+....-.|-++.+++++..+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998654 3333333322 2211 11111 11222333445566666666554
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 004976 199 EAVGCCPNLITYSTLMDGLCKDG-RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNV 277 (721)
Q Consensus 199 ~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 277 (721)
...... . ++..+++-+.... .+++-..+.....+ .++..+|..+..+-...|+.+.|..++.+|.+.|++-+.
T Consensus 166 Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred Cccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 432110 1 1111233332222 23333333333322 578999999999999999999999999999999988888
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 278 VTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL 357 (721)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (721)
.-|..++-+ .++...+..++.-|...|+.|+..|+...+..+...|....+.. |.+ ....+..-...-
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq-~~hg~tAavrsa 307 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQ-LAHGFTAAVRSA 307 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccc-hhhhhhHHHHHH
Confidence 777766654 78888889999999999999999998887777766554222111 111 222222222222
Q ss_pred HhcC-----C-----HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC-ChhhHHHHH
Q 004976 358 CQKG-----L-----VGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL-DVVTYNNLI 426 (721)
Q Consensus 358 ~~~~-----~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 426 (721)
.-.| + ..-....+.+..-.|+.....+|....... .+|.-++..++...+........+ +...+..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 2223 1 111112222222223333334444333322 257767777776666541111111 222333333
Q ss_pred HHHHhcCChhHHHHHHH--HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-------CCHHHHH
Q 004976 427 QGLCKEDRLDEAVKIYH--TMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLEL----GHV-------PNSVTYS 493 (721)
Q Consensus 427 ~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~~~~ 493 (721)
.-|.+.-+..-...++. +..+.. .+....-.+....... +...++..+...... .+. +-...-.
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 33332211111111111 111110 0011111111111110 111111111111110 001 1122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHc
Q 004976 494 SMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA--NCEPDVVSFNTMINGTLK 571 (721)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 571 (721)
.++..+++.-+..++...-++....-+ ...|..++..+......+.|..+.+++... .+..|..-+..+.+...+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 455555555555555544444333211 256777777777788888888888777642 223344556677788888
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 004976 572 AGDLQSARELYNNMLQMGL-PPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
.+....+..++.++.+.-. .|+ ..++..+.......|+.+.-.+.++-+...|+..+ .-+.....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888888877521 222 34555666666777888888888777777665442 22333455666777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 650 DLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
+..+..... ++|.+.....+...
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRL 639 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHH
Confidence 666655432 45544444444433
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6e-10 Score=107.91 Aligned_cols=455 Identities=14% Similarity=0.124 Sum_probs=240.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDG 221 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 221 (721)
.=+..+...|++++|++...+++..+ +.+..++..-+.++.+.++|++|+.+.+.-... ..+...+-.-+-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33566778888888888888888775 556667777777888888888888555443211 011111111223344778
Q ss_pred ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hcCCHHHHHHHH
Q 004976 222 RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLC-KIGQWKEAIAML 300 (721)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 300 (721)
..++|+..++-.... +..+...-++.+.+.|++++|..+|+.+.+.+.+ + +...+++-+ ..+-.-.+. +.
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HH
Confidence 888888877722211 3346666677788888888888888888766322 2 222221111 111001111 12
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHhcCCHhHH
Q 004976 301 DAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKG-------EKLSV-------ITYNVLIKGLCQKGLVGEA 366 (721)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a 366 (721)
+..... ...+-..+.+....+...|++.+|+++++...+.+ ...+. .+...+..++...|+-++|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 222111 11123344555666677788888888887774321 11001 1112233334445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChh--HHHHHHHH
Q 004976 367 YEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLD--EAVKIYHT 444 (721)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~ 444 (721)
..+|...++.... |.. ...+..+=+.+.....++. .++..++.
T Consensus 244 ~~iy~~~i~~~~~-D~~----------------------------------~~Av~~NNLva~~~d~~~~d~~~l~~k~~ 288 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEP----------------------------------SLAVAVNNLVALSKDQNYFDGDLLKSKKS 288 (652)
T ss_pred HHHHHHHHHhcCC-Cch----------------------------------HHHHHhcchhhhccccccCchHHHHHHHH
Confidence 5555555444221 221 1111111111111111111 11111111
Q ss_pred ------------HHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHH
Q 004976 445 ------------MAERGISGNLVTF-NILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGF--CKIGMLNIAK 509 (721)
Q Consensus 445 ------------~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~ 509 (721)
+... ....... +.++..| .+..+.+.++....... .|. ..+..++... .+...+..+.
T Consensus 289 ~~~~l~~~~l~~Ls~~--qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 289 QVFKLAEFLLSKLSKK--QKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhH
Confidence 1110 0001111 1122222 33344444443333221 222 2333333322 2223577788
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004976 510 GIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFI--------EIRNANCEPDVVSFNTMINGTLKAGDLQSAREL 581 (721)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 581 (721)
+++...-+..+.....+...++.....+|+++.|++++. .+.+.+..| .+...+...+.+.++.+.|..+
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHH
Confidence 888887776433334566667777888999999999998 555544334 3445566667777776666666
Q ss_pred HHHHHhC------CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 582 YNNMLQM------GLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 582 ~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
+.+++.. +-..-..++...+..-.+.|+-++|...++++.+.+ ++|..+...++.+|... +.+.|..+-+++
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 6655542 111112345556666678899999999999999874 78888888888888775 566776665543
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=8.4e-10 Score=113.12 Aligned_cols=275 Identities=13% Similarity=0.038 Sum_probs=168.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQ--KPKFAL 122 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~ 122 (721)
.+.+-.|...|+.++..++. + -...+.+...+..|..|..++......+ .+...+..+-.++.+.+ ..+.|.
T Consensus 381 P~~l~~as~~Ydn~lSaD~s-n---~~akgl~~ie~~~y~Daa~tl~lv~~~s--~nd~slselswc~~~~~ek~mdva~ 454 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADAS-N---QRAKGLAPIEANVYTDAAITLDLVSSLS--FNDDSLSELSWCLPRALEKMMDVAL 454 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChh-h---hhhcchhHHHHhhchHHHHHHHHHHHhh--cCchhhhHhhHHHHHhHHhhhhHHH
Confidence 44555666666666655433 1 2333444555666666666666665543 22223333333332211 000000
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 123 GVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
-.+ ....+...+..|.+.. ...|...|-+..+.+ +.-...|..|+..|....+...|.+.|++..+.+
T Consensus 455 ~~~----------~e~~~~w~a~~~~rK~-~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 455 LLE----------CENSEFWVALGCMRKN-SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD 522 (1238)
T ss_pred HHH----------HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000 0112233344444433 677777777777664 3334578888888888778888888888887765
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC-CCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 004976 203 CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD-ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYN 281 (721)
Q Consensus 203 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 281 (721)
..+...+......|+...+++.|..+.-..-+..+. .-...|...+-.|...+++..|...|+..+..+ +.|...|.
T Consensus 523 -atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~ 600 (1238)
T KOG1127|consen 523 -ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWL 600 (1238)
T ss_pred -chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHH
Confidence 345667778888888888888888874433332111 122334446666778888888888888888764 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 282 SLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 282 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
.++.+|.+.|++..|+++|.+.... .|+ ...-.......+..|.+.+++..+..++..
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888998899999999888887764 344 223333444566788888888888877653
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.4e-11 Score=113.98 Aligned_cols=237 Identities=17% Similarity=0.193 Sum_probs=176.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------H
Q 004976 422 YNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYS-------S 494 (721)
Q Consensus 422 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~ 494 (721)
...++.+..+..+++.|++-+....+.. .+..-++....+|...|.+..+.......++.|.. ...-++ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777788888999999998888764 46666777888888899888888888777776543 222232 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCC
Q 004976 495 MIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVV-SFNTMINGTLKAG 573 (721)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 573 (721)
++.++.+.++++.|+..|++.+.....|+ ...+....+++.+..+...-.+ |... -...-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhcc
Confidence 34456667888999999988776533332 2334455566666665555433 4332 2333477788999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 004976 574 DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 653 (721)
++..|+..|.+++... |.|...|.+.+.+|.+.|.+..|++-.+..++.+ ++....|..-+.++....++++|.+.|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976 6777899999999999999999999999999875 6667788888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh
Q 004976 654 EMADKGVHLDQELTSTILVCLCN 676 (721)
Q Consensus 654 ~~~~~~~~p~~~~~~~ll~~~~~ 676 (721)
+.++ ..|+...+...+.-|..
T Consensus 451 eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHh--cCchhHHHHHHHHHHHH
Confidence 9998 67877776666655444
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=5.4e-12 Score=132.59 Aligned_cols=214 Identities=14% Similarity=0.021 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 469 IIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFI 548 (721)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 548 (721)
++++|...++++++.++. +...+..++.++...|++++|...++++++.++ .+...+..++.++...|++++|+..++
T Consensus 319 ~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356666666666666543 555566666666666666666666666666532 234455666666666666666766666
Q ss_pred HHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 004976 549 EIRNANCEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPP-DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHK 626 (721)
Q Consensus 549 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (721)
++++.+ |+. ..+..++..+...|++++|+..++++.... +| +...+..++.++...|++++|...++++... .+
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~ 472 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EI 472 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cc
Confidence 666643 332 222233334445666667777666666542 23 3344555666666677777777776665443 12
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCchhhHhhHHHHHHhc
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLIHEMADK-GVHLDQELTSTILVCLCNISEDLDVAKLFPTFSQE 693 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 693 (721)
.+......++..|...| ++|...++++.+. .-.|.+..+ ...++.-.|+.+.+..+.++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHHHHhhcc
Confidence 23334445555555555 3566655555431 122222222 33333445566666665444443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=8.2e-13 Score=117.51 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004976 246 SALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG 325 (721)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (721)
+.++.+|.+.|.+.+|.+.|+..++. .|-+.||..+.+.|.+..+.+.|+.++.+.++. .+-|+....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788888888888888888888776 566778888888888888888888888887775 333455556677778888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004976 326 GRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELF 405 (721)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 405 (721)
++.++|.++|+...+. .+.+......++..|.-.++++.|+..|+++++.|+. ++..|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888888876 3446666666777777888888888888888888776 7788888888888888888888888
Q ss_pred HHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 406 NLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELG 484 (721)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 484 (721)
.+++...........+|.++....+..|++..|.+.|+-.+..+ +.+...++.+.-.-.+.|+++.|..++..+....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88876433223345677778777778888888888888777665 4466777777777777888888888887776643
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.8e-09 Score=98.57 Aligned_cols=287 Identities=15% Similarity=0.051 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 004976 291 GQWKEAIAMLDAMMERG-IRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEI 369 (721)
Q Consensus 291 g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 369 (721)
++-..+...+-.+.... ++-|......++.++...|+.++|+..|++....+ +-+.......+..+.+.|+.+....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 44444444433333222 44457777888888888888888888888887652 22333344445556677888877777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 370 LNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERG 449 (721)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 449 (721)
...+.... .-...-|..-+.......+++.|+.+-++.+..++ .+...+..-+..+...+++++|.-.|+.++...
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~---r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP---RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc---ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77766541 11233344444555566788888888888887544 355566666777888899999999998887764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-hhh
Q 004976 450 ISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMI-DGFC-KIGMLNIAKGIFSKMRVSGNDPT-LFD 526 (721)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~ 526 (721)
|.+...|..++.+|...|.+.+|...-+...+.- ..+..+...++ ..+. ...--++|..++++.+.. .|+ ...
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 6678889999999999999998888777766642 22555555443 2222 233357788888877765 455 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 527 YNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 527 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
.+.++..+...|.+++++.++++.+. ..||....+.|+..+...+.+++|++.|..+++.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66777778888888888888888877 3478888888888888888888888888888874
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.5e-08 Score=99.58 Aligned_cols=198 Identities=17% Similarity=0.239 Sum_probs=136.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004976 453 NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMA 532 (721)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (721)
.+..|..++.+-.+.|...+|++.|-++ .|+..|..+++...+.|.+++-..++..+.+...+|.+. ..|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 5667888888888888888888776543 377788889999999999999999888888775555544 57778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 004976 533 SLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSD 612 (721)
Q Consensus 533 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 612 (721)
+|.+.++..+-.+.+ ..|+......+++-|...|.++.|.-+|.... .|..|+..+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHH
Confidence 888888877755543 23777777778888888888888877766443 24555555666666665
Q ss_pred HHHHHHHHH------------------------HCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004976 613 AKSVYQKMV------------------------ASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTS 668 (721)
Q Consensus 613 A~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (721)
|....+++- ...+-....-+..++..|...|.+++-+.+++..+ |++--..-..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmf 1316 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMF 1316 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHH
Confidence 554433321 12223455667778888888888888888887765 3444444444
Q ss_pred HHHHHHHh
Q 004976 669 TILVCLCN 676 (721)
Q Consensus 669 ~ll~~~~~ 676 (721)
.-++-++.
T Consensus 1317 TELaiLYs 1324 (1666)
T KOG0985|consen 1317 TELAILYS 1324 (1666)
T ss_pred HHHHHHHH
Confidence 44444444
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=8.6e-10 Score=111.51 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004976 281 NSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ 359 (721)
Q Consensus 281 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (721)
..+...|...|++++|++.+++.++. .|+ +..|..-+..+-..|++.+|.+.++...... .-|..+-+..+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 33444455555555555555555554 233 4445555555555555555555555555442 2244444444555555
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 004976 360 KGLVGEAYEILNMMIEKGMMPDV--------VSYNTLLMGIGKFGKVDEALELFNLVLK 410 (721)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 410 (721)
.|+.++|.+++....+.+..|.. +.....+.+|.+.|++..|++.|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555544443321111 1112334455555666666555555544
No 77
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=7.6e-10 Score=112.10 Aligned_cols=274 Identities=14% Similarity=0.136 Sum_probs=165.3
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004976 89 VYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGV 168 (721)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 168 (721)
++-.+...|+.|+..+|.++|..|+..|+.+.|- +|..|.-.+.+.+...++.++....+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555677888888888888888888888887 7777776666777777888877777777766664
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHH
Q 004976 169 SPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSAL 248 (721)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 248 (721)
.|...+|..|..+|...|+... |+...+ ....+...+...|--..-..++..+. +.+.....-.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~--c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIH--CCPHSLPDAENA 145 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcc--cCcccchhHHHH
Confidence 4677788888888888888654 222211 01122223333333333333332211 111111122334
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004976 249 ISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCK-IGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGR 327 (721)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (721)
+....-.|-++.+++++..+..... +. ....+++-+.. ...+++-..+.....+ .|++.++..++.+....|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 4444555666666666655443210 10 11112333222 2233444444443333 4677788888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004976 328 ATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGK 397 (721)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 397 (721)
.+.|..++.+|.+.|.+.+.+-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888888888888777777766654 67777777788888888888888777766655555433
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.7e-08 Score=99.14 Aligned_cols=540 Identities=13% Similarity=0.081 Sum_probs=284.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--------CCCCCCHhhHHHHHHHHHhcC
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTC--------VHIFPSFLSLSGLIEVFVQTQ 116 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~ 116 (721)
-|+.|.|.+..+.+. +..+|..|+..+.+.++.+-|.-.+-.|.. .....+...-...+....+.|
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 478899988877653 677899999999999988888766654432 211222233345555567889
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 117 KPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILP 196 (721)
Q Consensus 117 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 196 (721)
-.++|..+|.+..+ |..+-..|...|.+++|.++.+.--... =..+|.....-+-..++.+.|+++|+
T Consensus 815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 99999999999854 3345566778899999998877544332 22356566666677888999998887
Q ss_pred HHHhC----------C---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 197 DMEAV----------G---------CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 197 ~~~~~----------~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
+.... . ...|...|.-.+.-+-..|+.+.|+.+|..+.. |..+.+..+-+|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 64221 0 011223333344444445666666666655543 4445555556666
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC--CChhhHHHHHHHHHhc--CChHHH
Q 004976 258 FDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERG--IR--PDVVTYTCLIEGLCKG--GRATKA 331 (721)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~--g~~~~a 331 (721)
.++|-++-++- .|..+...+++.|-..|++.+|..+|.+...-. +. .....-..|+...... .+.-.|
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 66666655442 255556667777777777777777766544210 00 0000001111111111 122223
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHhccCCHHHH
Q 004976 332 IDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNM--------MIE--KGMMPDVVSYNTLLMGIGKFGKVDEA 401 (721)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A 401 (721)
-.+|++.- . -+...+..|-+.|.+.+|+++-=+ ++. .....|+..++....-+....++++|
T Consensus 1028 ArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1028 ARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 33333321 0 111223344555555555443211 111 12234555566666666666666666
Q ss_pred HHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCh----hhHHHHHHHHHhcCCHHHHHHH
Q 004976 402 LELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERG-ISGNL----VTFNILIGKYLTAGIIDKALEM 476 (721)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 476 (721)
..++-...+ |...+..| ...+..-..++-+.|.-.. -.|+. ..+..++..+.++|.+..|-+-
T Consensus 1100 V~lL~~ar~-----------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1100 VNLLCLARE-----------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHHHHHH-----------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 666655543 12222222 2233333333333332211 12222 3455666777788888877776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----------------HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004976 477 WKHLLELGHVPNSVTYSSMIDGFCKIGMLNIA----------------KGIFSKMRVSGNDPTLFDYNALMASLCKESSL 540 (721)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 540 (721)
|.++-.. ...++++.+.|+.++. ..+++. .+...++.+...+...|.+...+
T Consensus 1168 fTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqaf 1235 (1416)
T KOG3617|consen 1168 FTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAF 1235 (1416)
T ss_pred HhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhH
Confidence 6654321 2334555666665432 112211 12233444444444444444334
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----------HhcCC
Q 004976 541 EQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRF-----------LRFGL 609 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~g~ 609 (721)
+---..|....+ .....+..+.. ..|-.++|...+.++.+++ .....++.|-.-. ....+
T Consensus 1236 d~LanFY~~cAq----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD 1306 (1416)
T KOG3617|consen 1236 DHLANFYKSCAQ----IEIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKED 1306 (1416)
T ss_pred HHHHHHHHHHHH----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333322 11111111111 2344566666666666542 1112222221111 11235
Q ss_pred HhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 004976 610 LSDAKSVYQKMVASGHKP----NACVYDSLLKGFSSQGETEEVFDLIHEMADK 658 (721)
Q Consensus 610 ~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 658 (721)
..+.++-.+.+++...-| ....|..+++.+....+|..|.+.++.|..+
T Consensus 1307 ~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1307 AADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 666677777777653323 3467889999999999999999999999874
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=3.1e-11 Score=113.53 Aligned_cols=200 Identities=18% Similarity=0.149 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004976 454 LVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMAS 533 (721)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (721)
...+..++..+...|++++|...++++++..+. +...+..++..+...|++++|...+++..+..+ .+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 344555566666666666666666666655432 445555666666666677777776666665532 234455666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 004976 534 LCKESSLEQAKRLFIEIRNANC-EPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSD 612 (721)
Q Consensus 534 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 612 (721)
+...|++++|.+.++++..... +.....+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6777777777777777665321 1223455666777777777777777777777743 3345566777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 613 AKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 613 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
|...++++... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888777765 245566666677777777888888777776654
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=1.2e-09 Score=98.46 Aligned_cols=314 Identities=15% Similarity=0.108 Sum_probs=169.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 004976 279 TYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSV-ITYNVLIKG 356 (721)
Q Consensus 279 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 356 (721)
-...++..+...|++..|+..|...++. .|+ -.++..-...|...|+..-|+.-+.++++. +||- .....-+..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 3444555555555555565555555543 121 223333344555555555555555555543 2222 122223344
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChh
Q 004976 357 LCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLD 436 (721)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 436 (721)
+.++|.+++|..-|+..+++. |+..+ ..++.+-+..+. ........+..+...|+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~--------e~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQ--------EHWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHH--------HHHHHHHHHHHHhcCCchh
Confidence 555555555555555555542 11100 000000000000 0011222333455667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 437 EAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMR 516 (721)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (721)
.|+.....+++.. +.+...+..-..+|...|++..|+.-++.+.+.... +...+..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777764 556666666677777777777777777777665433 55666666677777777777777777777
Q ss_pred HcCCCCChhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHH
Q 004976 517 VSGNDPTLFD----YNAL---------MASLCKESSLEQAKRLFIEIRNANCEPDVV---SFNTMINGTLKAGDLQSARE 580 (721)
Q Consensus 517 ~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 580 (721)
+. .||... |..+ +......+++.++++-.+...+........ .+..+..++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 65 344221 1111 112234566666666666666644221111 23345556666777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 581 LYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
...++++.. +.|..++..-+.+|.-...++.|+.-|+++.+.+
T Consensus 329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777777732 2336677777777777777777777777777653
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=3.7e-11 Score=113.04 Aligned_cols=200 Identities=14% Similarity=0.055 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....+..++..+...|++++|+..|++++..+ |.+...+..++..+...|++++|.+.++.+++..+ .+...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 45667777788888888888888888877664 55566677777777777777777777777776643 35566666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGV-SPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVD 224 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 224 (721)
.+...|++++|...++++.+... +.....+..+..++...|++++|...+.+..... +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 1123345555556666666666666666665542 223345555556666666666
Q ss_pred HHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 225 EAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDML 269 (721)
Q Consensus 225 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 269 (721)
+|...++++... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666665554 22234444455555555566666655555543
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=1.1e-10 Score=99.59 Aligned_cols=209 Identities=16% Similarity=0.094 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004976 456 TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLC 535 (721)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (721)
+...++-.|...|++..|..-++++++.++. +..++..+...|.+.|..+.|.+.|++++...+ .+..+.|..+..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 3455667778888888888888888887654 667777777778888888888888888877642 25667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 004976 536 KESSLEQAKRLFIEIRNANC-EPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 536 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 614 (721)
.+|.+++|...|++++..-. .--..+|..++.+..+.|+.+.|...|++.++.. +....+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888776311 1123467777777788888888888888888753 344566777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 615 SVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTI 670 (721)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (721)
.++++....+ .++.+.+...++.-...|+.+.|.++=.++.. ..|....+...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 8888887765 47777777777777778888888877777766 66666555443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=2.2e-09 Score=108.56 Aligned_cols=289 Identities=14% Similarity=0.108 Sum_probs=176.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----Ch
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQ-----KP 118 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 118 (721)
..|++++|+++++.....- .......-..+..+.+.|++++|..+|+.++..+ |.+...+..+..+..... ..
T Consensus 16 e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccH
Confidence 4578888888887755443 3255666678888888888888888888888876 555555556666553222 45
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 119 KFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVN-KAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPD 197 (721)
Q Consensus 119 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 197 (721)
....++|+.....- + ...+...+.-.+..-..+. .+...+..++..|+| .+++.+-..|.......-...++..
T Consensus 94 ~~~~~~y~~l~~~y-p-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEKY-P-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHhC-c-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 66677777765543 2 2222222222222222333 344556667777743 2445555555544444444445444
Q ss_pred HHhC----C----------CCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHH
Q 004976 198 MEAV----G----------CCPNLI--TYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKG 261 (721)
Q Consensus 198 ~~~~----~----------~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 261 (721)
.... + -+|... ++..+...|...|++++|+.++++.++..+. .+..|..-+..+-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 4321 0 123332 3355566777788888888888888776433 466777778888888888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--------HHHHHHHHHhcCChHHHHH
Q 004976 262 KKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVT--------YTCLIEGLCKGGRATKAID 333 (721)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~ 333 (721)
...++.+...+.. |...-+..+..+.+.|+.++|.+++......+..|.... ....+.+|.+.|++..|++
T Consensus 248 a~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 248 AEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888887776433 555556667777788888888888777766543322211 1334566777777777777
Q ss_pred HHHHHHHC
Q 004976 334 LLNWMVKK 341 (721)
Q Consensus 334 ~~~~~~~~ 341 (721)
.|..+.+.
T Consensus 327 ~~~~v~k~ 334 (517)
T PF12569_consen 327 RFHAVLKH 334 (517)
T ss_pred HHHHHHHH
Confidence 77666543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=5.4e-11 Score=114.12 Aligned_cols=221 Identities=14% Similarity=0.013 Sum_probs=162.5
Q ss_pred CCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 004976 43 KPNSQYAEAVSLFQRAICSD---RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPK 119 (721)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (721)
.+++..+.++..+.+++... +......|..++.++.+.|++++|+..|+++++.+ |.+..++..++..+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34567788999999998643 33346778899999999999999999999999986 778889999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 120 FALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDME 199 (721)
Q Consensus 120 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 199 (721)
+|...|+.+++.++. +..++..++..+...|++++|++.|++..+.+ |+..........+...+++++|...|.+..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999987644 67788888999999999999999999999873 443222222223456778999999997765
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHC---CC---CCCccchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 200 AVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAK---GL---DADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG 272 (721)
Q Consensus 200 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 272 (721)
... .|+. |. ........|+...+ ..++.+.+. .+ +....+|..++..+.+.|++++|...|++++..+
T Consensus 193 ~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2332 22 12333345666544 344444421 11 1134578888888888999999999998888764
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.9e-10 Score=106.15 Aligned_cols=239 Identities=14% Similarity=0.115 Sum_probs=166.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-------
Q 004976 385 YNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTF------- 457 (721)
Q Consensus 385 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 457 (721)
...++....+..+++.|++.+...++.+ .+..-++....+|...|.+..++.......+.|-. ....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~----~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA----TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh----hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 4456777777788888888888888743 35666777778888888888888777776665521 22222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004976 458 NILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKE 537 (721)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (721)
..++.+|.+.++++.|+..|.+.+.....|+ ...+....+++....+...-.++.- ..-...-+..+.+.
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhc
Confidence 2234466677888999999988776543322 2233344555555555444332221 11222336678889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 004976 538 SSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVY 617 (721)
Q Consensus 538 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (721)
|++..|+..|.++++.+ +.|...|...+-+|.+.|.+..|+.-.+..++.. ++....|..-+.++....+|++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 4467788889999999999999999988888864 444567777788888888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHc
Q 004976 618 QKMVASGHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~ 641 (721)
.+.++.+ +.+.+....+.++...
T Consensus 450 ~eale~d-p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELD-PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcC-chhHHHHHHHHHHHHH
Confidence 9999875 5555666666666554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=3.9e-10 Score=99.47 Aligned_cols=323 Identities=15% Similarity=0.147 Sum_probs=215.0
Q ss_pred CCCcchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 004976 28 VPQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSG 107 (721)
Q Consensus 28 ~~~~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 107 (721)
++...+...+..++. ..+|..|++++..-.+.+++ +......++.+|.+..++..|-.+|++.-... |.....-.-
T Consensus 8 i~EGeftaviy~lI~--d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY 83 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIR--DARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLY 83 (459)
T ss_pred CCCCchHHHHHHHHH--HhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHH
Confidence 444445566667776 56899999999988888765 78888999999999999999999999987653 222223344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004976 108 LIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKR 187 (721)
Q Consensus 108 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 187 (721)
-++.+.+.+.+.+|+.+...+... ..........-.......+++..+..++++....| +..+.+...-...+.|+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 567788999999999999988532 11111122222334457889999999999887543 55566666666789999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccch----HHHHHHHHhcCChhHHHH
Q 004976 188 FKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVY----SALISGFCSNGSFDKGKK 263 (721)
Q Consensus 188 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~ 263 (721)
++.|.+-|+...+.+.......|+..+ +..+.|++..|++...+++++|+...+..- .-.+.+- .+..-..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr----svgNt~~ 234 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR----SVGNTLV 234 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh----cccchHH
Confidence 999999999998876555556676544 445789999999999999988865333211 0001100 0000001
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004976 264 LFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERG-IRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKG 342 (721)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 342 (721)
+.... -+.+++.-...+.+.|+++.|.+.+-.|..+. ...|+.|...+.-.- ..+++....+-+.-++..+
T Consensus 235 lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 11100 12234555566778899999998888876542 234566665554332 2344555555566666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 004976 343 EKLSVITYNVLIKGLCQKGLVGEAYEILNM 372 (721)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 372 (721)
+ ....+|..++-.||+..-++-|-.++.+
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 4577888888889998888888887765
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.42 E-value=7.7e-09 Score=102.62 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 004976 285 HCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVG 364 (721)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (721)
.+.....+|.+|+.+++.+.+.. .-..-|-.+..-|...|+++.|.++|.+. ..++..+.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33444455666666665555431 11223444555566666666666555432 12334455566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 365 EAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHT 444 (721)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 444 (721)
+|.++-.+... .......|..-..-+-+.|++.+|.++|-.+-. |+ ..+.+|-+.|..++.+++..+
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~------p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE------PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC------ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 66655544432 222233333334444455555555555543322 21 234455555555555555444
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 445 MAERGISGNLVTFNILIGKYLTAGIIDKALEMWK 478 (721)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (721)
-.. ..-..+...+..-+-..|+...|...|-
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 321 1112334444555555555555555443
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=3.9e-10 Score=108.28 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=135.9
Q ss_pred ChhHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004976 434 RLDEAVKIYHTMAERG---ISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKG 510 (721)
Q Consensus 434 ~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (721)
..+.++.-+.+++... .......|..++..|...|++++|...|+++++..+. +...|..++..+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 0111344666666677777777777777777776543 56677777777777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 004976 511 IFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGL 590 (721)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 590 (721)
.|+++++..+. +...+..++.++...|++++|++.|++..+.+ |+..........+...++.++|++.+++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777765322 34566667777777777777777777777644 333221111222344567777777776655431
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CC
Q 004976 591 PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS---GH---KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVH-LD 663 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~ 663 (721)
+|+...+ .......|+..++ +.++.+.+. .. +.....|..++..+.+.|++++|...|+++++ .. ||
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~~ 269 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--NNVYN 269 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCch
Confidence 3332221 2233345555443 244444321 00 12345777888888888888888888888877 44 36
Q ss_pred HHHHHHHHHHHHhc
Q 004976 664 QELTSTILVCLCNI 677 (721)
Q Consensus 664 ~~~~~~ll~~~~~~ 677 (721)
.+.+...+..+.+.
T Consensus 270 ~~e~~~~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555554
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=4.5e-10 Score=111.88 Aligned_cols=238 Identities=21% Similarity=0.286 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 004976 419 VVTYNNLIQGLCKEDRLDEAVKIYHTMAER-----G-ISGNLVTF-NILIGKYLTAGIIDKALEMWKHLLEL-----GHV 486 (721)
Q Consensus 419 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 486 (721)
..+...+..+|...|+++.|+.+++..++. | ..|...+. ..++..|...+++.+|..+|+.++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777776553 1 12333333 34677788888888888888888753 211
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 004976 487 -P-NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS-----GN-DPTL-FDYNALMASLCKESSLEQAKRLFIEIRNA---N 554 (721)
Q Consensus 487 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 554 (721)
| -..++..|..+|.+.|++++|..+++.+.+. +. .|.+ ..++.++..+...+++++|..++++..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2345677777888888888888877766532 11 2222 24566777788889999999998877652 1
Q ss_pred CCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 555 CEPDV----VSFNTMINGTLKAGDLQSARELYNNMLQM-----G-LPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 555 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+.++. .++..|+..|...|++++|.++++++++. + ..+. ...++.++..|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22333 37888999999999999999999998775 1 1122 356788999999999999998888876542
Q ss_pred ----C--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 624 ----G--HKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 624 ----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
| .+....+|..|+.+|...|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 23334578899999999999999999998876
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=3.2e-09 Score=95.76 Aligned_cols=331 Identities=14% Similarity=0.115 Sum_probs=219.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH-hHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIY-AFNLIL 144 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 144 (721)
.++-...++..+..+|++..|+.-|..++..+ |.+-.++...+..|...|+...|+.-+.++++. .|+.. +...-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 45556778999999999999999999999865 666678889999999999999999999999875 34433 334456
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 004976 145 KGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVD 224 (721)
Q Consensus 145 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 224 (721)
..+.++|.++.|..-|+.+++.. |+..+- ..++.+.--.++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 67889999999999999999873 433221 11211111111111 1122333455678888
Q ss_pred HHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 225 EAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMM 304 (721)
Q Consensus 225 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 304 (721)
.|+.....+++..+. |...|..-..+|...|+...|+.-++.+.+.. ..+..++..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888888888887555 88888888889999999999888888877664 3356677777888888899998888888888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--
Q 004976 305 ERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDV-- 382 (721)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 382 (721)
+. .||....... |- .+.+..+.++.| ......++|.++++-.+...+.......
T Consensus 251 Kl--dpdHK~Cf~~---YK---klkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPF---YK---KLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHH---HH---HHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 74 4554332211 11 111122222222 1223445566666666666554322111
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 383 -VSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERG 449 (721)
Q Consensus 383 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 449 (721)
..+..+..++...+++.+|++...+++..++ .|..++..-+.+|.-...++.|+.-|+.+.+.+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~---~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP---DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 1334445566666777777777777765332 246677777777777777777777777777764
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=8.5e-10 Score=94.20 Aligned_cols=199 Identities=17% Similarity=0.088 Sum_probs=158.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004976 421 TYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFC 500 (721)
Q Consensus 421 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 500 (721)
+...++-.|...|++..|.+-++++++.+ |.+..+|..+...|.+.|+.+.|.+.|++++...+. +..+.+..+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45566777888888888888888888876 667778888888888889999999999988887665 7778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004976 501 KIGMLNIAKGIFSKMRVSGNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAR 579 (721)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 579 (721)
..|++++|...|+++.....-+ ...+|..++.|..+.|+.+.|..+|++.+..+. ........+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 8889999999998888753222 245788888888889999999999998888652 23456777888888889999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 580 ELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.+++.....+ .++.......+..-.+.|+-+.+-++=..+...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9988888875 578888877777778888888887776666654
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.5e-08 Score=99.32 Aligned_cols=480 Identities=13% Similarity=0.083 Sum_probs=261.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+......|..++|+.+|++..+.+ .+-+.|-..|.+++|.++-+.-.+. .-..+|...+..+...++.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccH
Confidence 333455667777777777766532 3334455666777766665443211 1223455555555666666
Q ss_pred hHHHHHHHHHH----------hCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004976 154 NKAIELFGEIK----------SNG---------VSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLM 214 (721)
Q Consensus 154 ~~A~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 214 (721)
+.|++.|++.- +.. -..|...|......+-..|+.+.|+.+|..... |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 66666555431 110 012334455555555568999999999877654 56677
Q ss_pred HHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC---
Q 004976 215 DGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIG--- 291 (721)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 291 (721)
+..+-.|+.++|-++-++-. |..+...|++.|-..|++.+|...|.++.. +...|+.+-..+
T Consensus 946 rI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred eeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 77788999999988876542 666777899999999999999999988763 222333322222
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH--------HHH--CCCCCCHHH
Q 004976 292 ------------QWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW--------MVK--KGEKLSVIT 349 (721)
Q Consensus 292 ------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~ 349 (721)
+.-.|-.+|++.-. -+...+..|.+.|.+.+|+++--+ ++. .....|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 22233344433211 112334456777777777654221 111 133457778
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCCh----hhHHHH
Q 004976 350 YNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDV----VTYNNL 425 (721)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l 425 (721)
.+...+.++...++++|..++-...+ |...+..|. ..+..-..++-+.|... ++..|+. ..+..+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~-Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPT-KDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcC-cCCCccHHHHHHHHHHH
Confidence 88888888889999999988876654 222333333 22333333333333221 2122332 456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHHcCCCCCHHHH
Q 004976 426 IQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEM-------------WKHLLELGHVPNSVTY 492 (721)
Q Consensus 426 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~~~~ 492 (721)
+..|.++|.+..|.+-|-++-.. ...++++.+.|+.++..-+ -+-+...+...++.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~m 1222 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTM 1222 (1416)
T ss_pred HHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHH
Confidence 78889999999888877654321 1233445555554431100 0111122334455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHH
Q 004976 493 SSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCE--------PDVVSFNT 564 (721)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~ 564 (721)
..+...|.+..-++---.+|....+. .+.-|..+.. ..|-.++|.+.+.++...+.. .+..-+..
T Consensus 1223 K~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~ 1295 (1416)
T KOG3617|consen 1223 KDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKV 1295 (1416)
T ss_pred hhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 55555555443333333333322211 1111111111 133455555555555543210 01111111
Q ss_pred HHHHHH-cCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 565 MINGTL-KAGDLQSARELYNNMLQMGLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 565 l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
.+.... ...+..+.+.-...+....+.|+ ...|..++..+....+|..|-+.++++....
T Consensus 1296 ~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1296 QLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 222111 12255566666666666543443 3567888999999999999999999998763
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.8e-10 Score=111.42 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=178.0
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 33 VETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVF 112 (721)
Q Consensus 33 ~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (721)
+.++-.+...-.+|++.+|+-+||.++..+|. ..++|..|+......++-..|+..++++++.+ |.+..++..|+..|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 45566666665678899999999999999877 89999999999999999999999999999987 78888999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHhHHHHH---------HHHHhcCChhHHHHHHHHHHh-CCCCCChhhHHHHHHHH
Q 004976 113 VQTQKPKFALGVIGLILKRGFVVNIYAFNLIL---------KGFCRKGEVNKAIELFGEIKS-NGVSPDNCSYNTIVNGL 182 (721)
Q Consensus 113 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 182 (721)
...|.-..|..+++..+...++.- +.... ..+.....+....++|-.+.. .+..+|..+...|...|
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 999999999999998876554311 00000 011122233444555555443 33336777888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHH
Q 004976 183 CKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGK 262 (721)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 262 (721)
.-.|++++|+.+|+.++... |.|...|+.|+..++...+.++|+..|.++++..+. -+.+...|+-+|...|.+++|.
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHH
Confidence 88899999999999888764 446678999999998888899999999999887444 6778888888899999999998
Q ss_pred HHHHHHHh
Q 004976 263 KLFDDMLE 270 (721)
Q Consensus 263 ~~~~~~~~ 270 (721)
+.|-.++.
T Consensus 519 ~hlL~AL~ 526 (579)
T KOG1125|consen 519 KHLLEALS 526 (579)
T ss_pred HHHHHHHH
Confidence 88887764
No 94
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=7.2e-10 Score=110.47 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-------HIFPSFL-SLSGLIEVFVQTQKPKFALGVIGLILKR-----G 132 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 132 (721)
-..+...++.+|..+|+++.|+.+|.++++. . .+... ....++..|...+++.+|..+|+.++.. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 4455666777788888888888888777765 1 12222 2233556666666666666666665521 1
Q ss_pred CC--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 004976 133 FV--VNIYAFNLILKGFCRKGEVNKAIELFGEIKSN-----G-VSPDNC-SYNTIVNGLCKAKRFKEALDILPDMEAVG- 202 (721)
Q Consensus 133 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 202 (721)
.. .-..+++.|...|.+.|++++|...++++.+. + ..|.+. .++.+...+...+++++|..++++..+.-
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11 11234555555666666666666555554431 1 011111 23334444555555555555555443210
Q ss_pred --CCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004976 203 --CCPN----LITYSTLMDGLCKDGRVDEAMGLLEEMK 234 (721)
Q Consensus 203 --~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 234 (721)
..++ ..+++.+...|.+.|++++|.+++++++
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 0111 1234455555555555555555555444
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=7.2e-08 Score=95.91 Aligned_cols=367 Identities=15% Similarity=0.139 Sum_probs=165.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCCh
Q 004976 179 VNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSF 258 (721)
Q Consensus 179 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 258 (721)
+..|....+|++++.+-+. .|.+.-...-.+.++++...|+-++|-++ +.. +... ...++.|.+.|..
T Consensus 564 igmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~s----dgd~-laaiqlyika~~p 631 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----KES----DGDG-LAAIQLYIKAGKP 631 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh----ccc----cCcc-HHHHHHHHHcCCc
Confidence 4455666666666655432 12111122334445555555655554332 111 1111 2345666666666
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004976 259 DKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWM 338 (721)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 338 (721)
.+|......-.. +..|......+..++.+..-+++|-++|+++.. | ...+.++-+..-+.+|+++-+-.
T Consensus 632 ~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 632 AKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred hHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh
Confidence 655543322111 122444555555555555556666666655542 1 12223333333344444433222
Q ss_pred HHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC
Q 004976 339 VKKGEKLSVIT-YNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL 417 (721)
Q Consensus 339 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 417 (721)
.|..... -...+.-+...|+++.|+..|-+... ....+.+......+.+|+.+++.+..+. .
T Consensus 701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk----~ 763 (1636)
T KOG3616|consen 701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK----T 763 (1636)
T ss_pred ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc----c
Confidence 1111111 11223334445555555555443321 1122333444455666666665554321 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMID 497 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 497 (721)
....|-.+..-|...|+++.|.++|-+.- .+...+..|.+.|+|+.|.++-.+.. ++......|..-..
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAE 832 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHH
Confidence 22334455555666666666666554321 12334455566666666655544432 23333444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQS 577 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 577 (721)
-+-..|++.+|.++|-.+. .|+ ..+.+|-+.|..+..+++.++--. ..-..+...++.-+...|+.+.
T Consensus 833 dldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred hHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhH
Confidence 4555566655555543321 222 234455555555555555443221 0111244445555555666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 004976 578 ARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVY 617 (721)
Q Consensus 578 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (721)
|.+.|-++-. |..-+..|...+.|++|.++.
T Consensus 901 ae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 901 AEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 6655544332 233344455555555554443
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.7e-08 Score=89.36 Aligned_cols=316 Identities=13% Similarity=0.052 Sum_probs=196.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
+...+.-+.+-.++..|+++..-..+.. |.+...+..++.+|....++..|...|++.-..-|. -...-..-++.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHH
Confidence 3444555677788999999988887764 567888899999999999999999999988654322 22233344677788
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 150 KGEVNKAIELFGEIKSNGVSPDNCS--YNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAM 227 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 227 (721)
.+.+.+|+.+...|.+. ++... ...-.......+++..+..+.++....| +..+.+..+-...+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 89999999998888753 22211 1111123446778888888887776532 5556666666677889999999
Q ss_pred HHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchH----HHHHHHHHhcCCHHHHHHHHHHH
Q 004976 228 GLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTY----NSLMHCLCKIGQWKEAIAMLDAM 303 (721)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 303 (721)
+-|+.+.+.+.-....+| +++-+..+.|+++.|+++..+++++|+...+..- ...+.. ...|+. +. |
T Consensus 165 qkFqaAlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~----l 235 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV----L 235 (459)
T ss_pred HHHHHHHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH----H
Confidence 999888876443233344 4555667788889999988888888765332210 000000 000110 00 0
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 004976 304 MERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK-GEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDV 382 (721)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (721)
..++ -..+++.-...+.+.|+++.|.+.+..|.-+ ....|+.+...++-. -..+++.+..+-+.-++..+. -..
T Consensus 236 h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 236 HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CCh
Confidence 0000 1223444445566778888888877776433 223455555544322 224455566666666665533 345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHH
Q 004976 383 VSYNTLLMGIGKFGKVDEALELFNL 407 (721)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~A~~~~~~ 407 (721)
.|+..++-.|++..-++.|-.++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777777788887777777666543
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=2.7e-08 Score=99.97 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=101.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 35 TQLRLLFEKPNSQYAEAVSLFQRAICSDRLP--SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVF 112 (721)
Q Consensus 35 ~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (721)
....+.+....++++.|.+.+.++....+.. ..+.....+..+...|++++|..++++++... |.+...+.. ...+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHH
Confidence 3334444434455566666666655443221 12333344555666677777777777776653 444433332 2222
Q ss_pred Hh----cCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 113 VQ----TQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 113 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 188 (721)
.. .+....+.+.+... ....+........++..+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22 23333333333331 11112223344445556666677777777777666653 33445556666666666777
Q ss_pred HHHHHHHHHHHhCCC-CCCH--hhHHHHHHHHHhcCChhHHHHHHHHHhH
Q 004976 189 KEALDILPDMEAVGC-CPNL--ITYSTLMDGLCKDGRVDEAMGLLEEMKA 235 (721)
Q Consensus 189 ~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (721)
++|..++++...... .|+. ..|..+...+...|++++|..+++++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777776666655421 1121 1233455666666666666666666643
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=5.2e-08 Score=97.86 Aligned_cols=302 Identities=14% Similarity=0.054 Sum_probs=138.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 104 SLSGLIEVFVQTQKPKFALGVIGLILKRGFV-VN-IYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG 181 (721)
Q Consensus 104 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (721)
.+..++..+...|+.+.+...+....+..+. .+ .......+..+...|++++|...++++.+.. |.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 3444444444445555544444444332211 11 1122222334455566666666666665542 223333331 111
Q ss_pred HH----hcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcC
Q 004976 182 LC----KAKRFKEALDILPDMEAVGCCPN-LITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNG 256 (721)
Q Consensus 182 ~~----~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 256 (721)
+. ..+....+.+.+.... ...|+ ......+...+...|++++|...+++..+..+. +...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 21 1233333443333311 11222 223334455666667777777777777665433 5556666666777777
Q ss_pred ChhHHHHHHHHHHhCCCC-CCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH-H--HHHHHHHhcCChH
Q 004976 257 SFDKGKKLFDDMLEKGIS-PNV--VTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTY-T--CLIEGLCKGGRAT 329 (721)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~~ 329 (721)
++++|...+++.+..... |+. ..|..+...+...|++++|+.++++.......+. .... . .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 777777777766654211 121 1244566666777777777777776643211111 1111 0 1222222333322
Q ss_pred HHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHhccCC
Q 004976 330 KAIDL--LNWMVKKGE--KLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMP--------DVVSYNTLLMGIGKFGK 397 (721)
Q Consensus 330 ~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~ 397 (721)
.+..+ +........ ..........+.++...|+.+.|...++.+....... ...........+...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 111111100 1111122245566667777888888777766532110 01111222233446667
Q ss_pred HHHHHHHHHHHHh
Q 004976 398 VDEALELFNLVLK 410 (721)
Q Consensus 398 ~~~A~~~~~~~~~ 410 (721)
.++|.+.+..++.
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.5e-09 Score=102.75 Aligned_cols=222 Identities=15% Similarity=0.061 Sum_probs=103.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 111 VFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKE 190 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 190 (721)
.+.+.|++.+|.-.|+.+++.+| .+..+|-.|+.....+++-..|+..+++.++.+ +.|..+...|...|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 34444445555555555444432 244444444444444444444555555554443 3334444444444444444444
Q ss_pred HHHHHHHHHhCCCC--------CCHhhHHHHHHHHHhcCChhHHHHHHHHHh-HCCCCCCccchHHHHHHHHhcCChhHH
Q 004976 191 ALDILPDMEAVGCC--------PNLITYSTLMDGLCKDGRVDEAMGLLEEMK-AKGLDADVVVYSALISGFCSNGSFDKG 261 (721)
Q Consensus 191 a~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 261 (721)
|.+++...+....+ ++...-.. ..+.....+....++|-++. ..+..+|..++..|+-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 44444444332100 00000000 01111112222333333332 222224555555666666666666666
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004976 262 KKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMV 339 (721)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 339 (721)
...|+.++... +-|...|+.|+..+....+.++|+..|.+.++. .|+ +.+...|+..|...|.+++|.+.|-.++
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666665542 224445666666666666666666666666553 444 4455555556666666666665555443
No 100
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=1.6e-08 Score=96.57 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=160.3
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSK-NYEYAFSVYSKMTCVHIFPSFLSLSGLIE 110 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 110 (721)
+...++++++.. .+.+++|+..++.++..+|. +..+|+..+.++...| ++++++.++++++..+ |.+..+|.....
T Consensus 38 ~a~~~~ra~l~~-~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYAS-DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 355688888774 45889999999999998866 7788988888888888 6899999999999886 667778887777
Q ss_pred HHHhcCCh--hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 004976 111 VFVQTQKP--KFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKA--- 185 (721)
Q Consensus 111 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 185 (721)
++.+.|+. +.+..+++.+++.++ .+-.+|+....++...|++++++..++++++.+ +.|..+|+....++.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccc
Confidence 77777763 678888888888764 488889888888888899999999999999886 55677888777666554
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHhHCCCCCCccchHHHHHHHHh
Q 004976 186 KRF----KEALDILPDMEAVGCCPNLITYSTLMDGLCKD----GRVDEAMGLLEEMKAKGLDADVVVYSALISGFCS 254 (721)
Q Consensus 186 g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (721)
|.. ++.+.+..+++... +-|...|+.+...+... +...+|.+.+.++...++. +..+...|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45666666666653 44666787777777662 3345577777776664433 55566666666654
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.3e-05 Score=83.28 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004976 523 TLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIH 602 (721)
Q Consensus 523 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 602 (721)
.+.+|..++.+..+.|...+|++-|-++ .|+..|...+....+.|++++-..++..+.++.-.|...+ .|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 3456777777777777777777665332 3555677777777777888887777777776544444443 5566
Q ss_pred HHHhcCCHhHHHHH
Q 004976 603 RFLRFGLLSDAKSV 616 (721)
Q Consensus 603 ~~~~~g~~~~A~~~ 616 (721)
+|.+.++..+-.++
T Consensus 1175 AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHhchHHHHHHH
Confidence 66666666554443
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=7.3e-07 Score=101.81 Aligned_cols=371 Identities=13% Similarity=-0.011 Sum_probs=228.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004976 284 MHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGL 362 (721)
Q Consensus 284 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (721)
...+...|++.+|.......... +. ..............|+.+.+..++..+.......++.........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455566666655544332110 00 111222333455567777777766654211111122233445556677899
Q ss_pred HhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC--ChhhHHHHHHHHHhc
Q 004976 363 VGEAYEILNMMIEKGM------MPDV--VSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL--DVVTYNNLIQGLCKE 432 (721)
Q Consensus 363 ~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 432 (721)
++++...+..+...-- .+.. .....+...+...|++++|...++.+....+.... .......+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999988765311 1111 12223344566789999999999998763221111 112345666777889
Q ss_pred CChhHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHH
Q 004976 433 DRLDEAVKIYHTMAERGI---SGN--LVTFNILIGKYLTAGIIDKALEMWKHLLEL----GHV--P-NSVTYSSMIDGFC 500 (721)
Q Consensus 433 ~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~ 500 (721)
|++++|...++++....- .+. ...+..+...+...|+++.|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999988764311 111 234456677788899999999998887653 211 1 1223445566677
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-----HHHHHHHH
Q 004976 501 KIGMLNIAKGIFSKMRVSGN--DP--TLFDYNALMASLCKESSLEQAKRLFIEIRNANC-EPDVVSF-----NTMINGTL 570 (721)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~ 570 (721)
..|++++|...+++...... .+ ....+..++..+...|++++|...++++..... ......+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 88999999999988765311 11 133445566778889999999999988865210 0111111 11223445
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHc
Q 004976 571 KAGDLQSARELYNNMLQMGLPPDAL----TYSTLIHRFLRFGLLSDAKSVYQKMVAS----GHKP-NACVYDSLLKGFSS 641 (721)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~ 641 (721)
..|+.+.|..++....... ..... .+..++.++...|++++|...++++... |... ...++..++.++..
T Consensus 665 ~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 6889999999987765422 11111 1356777888999999999999998764 2222 23467778888999
Q ss_pred CCChhHHHHHHHHHHHc
Q 004976 642 QGETEEVFDLIHEMADK 658 (721)
Q Consensus 642 ~g~~~~A~~~~~~~~~~ 658 (721)
.|+.++|...+.++++.
T Consensus 744 ~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 744 QGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999999874
No 103
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=2.8e-07 Score=88.20 Aligned_cols=207 Identities=11% Similarity=0.052 Sum_probs=131.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--
Q 004976 429 LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAG-IIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGML-- 505 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 505 (721)
+...++.++|+..+.++++.+ |.+..+|.....++...| ++++++..++++++.+++ +..+|.....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 334566777777777777664 445556666655666666 467777777777776554 555666555555555553
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CC----HHHH
Q 004976 506 NIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKA---GD----LQSA 578 (721)
Q Consensus 506 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A 578 (721)
++++.+++++++.++ -+..+|+....++...|+++++++.++++++.++ .+..+|+..+.+..+. |. .+++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHH
Confidence 566777777776643 2566777777777777777777777777777653 3555666666555443 22 2456
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004976 579 RELYNNMLQMGLPPDALTYSTLIHRFLRF----GLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (721)
+++..+++... |.|...|+.+...+... ++..+|.+.+.++...+ +.+...+..|+..|..
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 77776777643 44556777777666652 34456777777766643 4566677777777765
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=1.4e-06 Score=99.55 Aligned_cols=339 Identities=12% Similarity=0.020 Sum_probs=217.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CC--CHHHHHHHHHHH
Q 004976 286 CLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGE------KL--SVITYNVLIKGL 357 (721)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~--~~~~~~~l~~~~ 357 (721)
.....|+++.+..+++.+.......++.........+...|+++++...+......-. .+ .......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666542211112233334455566778999999999988754311 11 112223344566
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC---ChhhHHHHHHHHH
Q 004976 358 CQKGLVGEAYEILNMMIEKGMMPDV----VSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL---DVVTYNNLIQGLC 430 (721)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 430 (721)
...|++++|...+++....-...+. .....+...+...|++++|...+.++......... ....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999998764211122 23455666778899999999999988753221111 1234566677888
Q ss_pred hcCChhHHHHHHHHHHHC----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC--CHHHHHHHHHHH
Q 004976 431 KEDRLDEAVKIYHTMAER----GISG---NLVTFNILIGKYLTAGIIDKALEMWKHLLELGH--VP--NSVTYSSMIDGF 499 (721)
Q Consensus 431 ~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~~~~~l~~~~ 499 (721)
..|+++.|...+++.... +... ....+..+...+...|++++|...+.+...... .+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886552 2111 122344556677788999999999988865411 11 233444566678
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-hhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 004976 500 CKIGMLNIAKGIFSKMRVSGNDPT-LFDY-----NALMASLCKESSLEQAKRLFIEIRNANCEPDV---VSFNTMINGTL 570 (721)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 570 (721)
...|++++|...++++........ ...+ ...+..+...|+.+.|...+............ ..+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 899999999999988765311111 1111 11223445588999999987776542111111 12356777888
Q ss_pred cCCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 571 KAGDLQSARELYNNMLQM----GLPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
..|++++|...++++... +...+ ..+...++.++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999988764 22222 2466778888999999999999999999863
No 105
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.02 E-value=5.5e-05 Score=78.27 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=70.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 004976 78 VRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAI 157 (721)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 157 (721)
...+++.+|..-..+.++.+ |....+...-+-.+.+.|+.++|..+++.....+ ..|..+...+-.+|.+.|+.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 44566777777777777654 3444344444444566777777776655554332 235555666666666777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 158 ELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
.+|+++.+. .|+......+..+|.+.+++.+-.+.--++.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665 45555555666666666666554444444433
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=2.7e-07 Score=98.69 Aligned_cols=235 Identities=13% Similarity=0.073 Sum_probs=132.6
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcC---HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 90 YSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR-GFVVN---IYAFNLILKGFCRKGEVNKAIELFGEIKS 165 (721)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 165 (721)
|++.++.+ |.+...|...+....+.++.+.|+++.++++.. ++... ..+|.++++....-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 555556666666666666666666666666532 11111 23455555555555655666666666666
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCC-Cccc
Q 004976 166 NGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDA-DVVV 244 (721)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 244 (721)
.. ..-..|..|...|.+.+.+++|.++++.|.+.- ......|..++..+.+.++-+.|..++.++++.-+.. ....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 42 122345566666666666666666666666542 2345566666666666666666666666666542221 2333
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 004976 245 YSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD--VVTYTCLIEGL 322 (721)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 322 (721)
....+..-.+.|+.+.++.+|+..+... +.-...|+..+..-.+.|+.+.+..+|+++...++.|- -..|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 4444555566667666666666666542 22445666666666666666677777776666655443 23344444433
Q ss_pred HhcCChH
Q 004976 323 CKGGRAT 329 (721)
Q Consensus 323 ~~~g~~~ 329 (721)
-..|+-.
T Consensus 1682 k~~Gde~ 1688 (1710)
T KOG1070|consen 1682 KSHGDEK 1688 (1710)
T ss_pred HhcCchh
Confidence 4445443
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.98 E-value=4.3e-05 Score=74.31 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 004976 56 QRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVV 135 (721)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 135 (721)
++-++.+|- +.++|+.|++-+..+ .+++++..|+++... .|.++..|..-+......++++....+|.+++.. ..
T Consensus 10 ~~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vL 84 (656)
T KOG1914|consen 10 RERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VL 84 (656)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--Hh
Confidence 333444433 666777766655444 677777777777665 3555566666666666666666666666666543 23
Q ss_pred CHHhHHHHHH
Q 004976 136 NIYAFNLILK 145 (721)
Q Consensus 136 ~~~~~~~l~~ 145 (721)
+.+.|...+.
T Consensus 85 nlDLW~lYl~ 94 (656)
T KOG1914|consen 85 NLDLWKLYLS 94 (656)
T ss_pred hHhHHHHHHH
Confidence 4555554443
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=4e-08 Score=92.71 Aligned_cols=154 Identities=11% Similarity=0.128 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCC
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTL----KAG 573 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 573 (721)
++...|++++|++++... .+.......+.+|.+.++++.|.+.++.+.+.+ .|.. ...++.++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344556666666555432 234444455566666666666666666665532 2322 222332221 223
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHH
Q 004976 574 DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGET-EEVFDLI 652 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 652 (721)
++.+|..+|+++.+. .++++.+.+.++.++...|++++|.+.+++++..+ +.++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466777777776554 35566666666666677777777777777666543 44566666666666666666 4555666
Q ss_pred HHHHHcCCCCCH
Q 004976 653 HEMADKGVHLDQ 664 (721)
Q Consensus 653 ~~~~~~~~~p~~ 664 (721)
.++.. ..|++
T Consensus 260 ~qL~~--~~p~h 269 (290)
T PF04733_consen 260 SQLKQ--SNPNH 269 (290)
T ss_dssp HHCHH--HTTTS
T ss_pred HHHHH--hCCCC
Confidence 66655 44543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=4.4e-08 Score=82.35 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 544 KRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
..++++.++.+ |+. +..++..+...|++++|...|+.++... +.+...|..++.++...|++++|+..|++++..
T Consensus 13 ~~~~~~al~~~--p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566666632 443 5556777888889999999999888864 556778888888888999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 624 GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
+ +.++..+..++.++...|++++|+..|+++++ +.|+...+......
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQN 134 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 5 67888888888889999999999999999888 77877666654443
No 110
>PF13041 PPR_2: PPR repeat family
Probab=98.96 E-value=2.1e-09 Score=71.20 Aligned_cols=49 Identities=45% Similarity=0.935 Sum_probs=30.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004976 170 PDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLC 218 (721)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 218 (721)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=1.5e-07 Score=83.69 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=113.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 004976 497 DGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQ 576 (721)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 576 (721)
..|...|+++.+....+.+.. |. ..+...++.++++..+++.++.+ +.+...|..++..|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 356677777776444332211 11 01223566778888888887765 456778888899999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 004976 577 SARELYNNMLQMGLPPDALTYSTLIHRF-LRFGL--LSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 653 (721)
+|...|+++.+.. +.+...+..++.++ ...|+ .++|.++++++++.+ +.+...+..++..+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988864 45667888888764 56676 589999999998875 6678888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH
Q 004976 654 EMADKGVHLDQELTSTILV 672 (721)
Q Consensus 654 ~~~~~~~~p~~~~~~~ll~ 672 (721)
++++ ..|.......++.
T Consensus 169 ~aL~--l~~~~~~r~~~i~ 185 (198)
T PRK10370 169 KVLD--LNSPRVNRTQLVE 185 (198)
T ss_pred HHHh--hCCCCccHHHHHH
Confidence 9887 4443333344443
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=2.4e-08 Score=94.13 Aligned_cols=254 Identities=13% Similarity=0.136 Sum_probs=158.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004976 429 LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIA 508 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (721)
+.-.|++..++.-.+ ......+.+......+.+++...|+++.++.-. .. +..|.......+...+...++.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KK-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---cc-CCChhHHHHHHHHHHHhCccchHHH
Confidence 445688888886555 222221223445566778888899877654332 22 2255666666565555444555666
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 509 KGIFSKMRVSGNDPT-LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 509 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
+.-++........++ .......+..+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 665555443332222 333334455677789999999987543 3566777788999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHH--HhcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 588 MGLPPDALTYSTLIHRF--LRFG--LLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 588 ~~~~~~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
. ..|.. ...++.++ ...| ++++|..+|+++.+. .++++.+++.++.++...|++++|.+.++++.+ ..|.
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 4 44443 23333332 3333 699999999998765 578999999999999999999999999999987 5565
Q ss_pred H-HHHHHHHHHHHhcCchhhHhhHHHHHHhccCCCCc
Q 004976 664 Q-ELTSTILVCLCNISEDLDVAKLFPTFSQETSKGKS 699 (721)
Q Consensus 664 ~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (721)
+ .+...++.+....++..+..+.....+....|..+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4 44555555434434444666655555554455544
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=6.8e-07 Score=95.77 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=165.5
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 124 VIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD-----NCSYNTIVNGLCKAKRFKEALDILPDM 198 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 198 (721)
-|++.+... |.+...|-..+......++.++|++++++++.. +.+. ...|.++++.-..-|.-+...++|+++
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444432 445567777777888888888888888887754 2221 235677776666667777778888887
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Cc
Q 004976 199 EAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISP-NV 277 (721)
Q Consensus 199 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 277 (721)
.+.. ..-..|..|...|.+.+.+++|.++++.|.++ +.....+|..++..+.++++-+.|..++.++++.-... ..
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 7642 22345777888888888888888888888764 33467788888888888888888888888887652110 23
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 004976 278 VTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSV--ITYNVLIK 355 (721)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 355 (721)
......+..-.+.|+.+.+..+|+..+... +--...|+..++.-.+.|+.+.++.+|++++..+..+.. ..|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 344455566677888888888888877652 224677888888888888888888888888877665432 34555565
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 004976 356 GLCQKGLVGEAYEILNMMI 374 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~ 374 (721)
.--..|+-..+..+=.++.
T Consensus 1680 yEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHhcCchhhHHHHHHHHH
Confidence 5556666555554444443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=2.2e-07 Score=86.80 Aligned_cols=187 Identities=12% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--H
Q 004976 64 LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF---LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNI--Y 138 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 138 (721)
+.....+..++..+...|++++|+..|++++... |.+. .++..++.++.+.|++++|...++.+++..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3466777788888888888888888888887764 3333 45677788888888888888888888776543221 2
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 004976 139 AFNLILKGFCRK--------GEVNKAIELFGEIKSNGVSPDN-CSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLIT 209 (721)
Q Consensus 139 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 209 (721)
++..+..++... |++++|.+.|+++.+. .|+. ..+..+..... .... .. ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 455555556554 7788888888888876 3333 33322221110 0000 00 01
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhHCCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 210 YSTLMDGLCKDGRVDEAMGLLEEMKAKGLD--ADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
...+...+.+.|++.+|+..++.+.+..+. .....+..++.++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 124566778888888888888888775332 23467788888888888888888888877654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1e-07 Score=95.39 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=145.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 417 LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMI 496 (721)
Q Consensus 417 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 496 (721)
|-...-..+...+...|-...|..+++++.. |..++.+|...|+..+|..+..+.++. +|++..|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 3344445666677777777777777766543 455667777777777777777777662 45666776666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 004976 497 DGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQ 576 (721)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 576 (721)
+......-+++|.++.+..... .-..++......++++++.+.|+.....+ +--..+|..++.+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 6666666666666666554321 11122222334677777777777766643 224457777777777777777
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 577 SARELYNNMLQMGLPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
.|.+.|...+.. .|| ...|+++..+|.+.|+-.+|...++++.+.+ ..+..+|........+.|.+++|.+.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777777773 344 4677777777777777777777777777765 556667777777777777777777777776
Q ss_pred HH
Q 004976 656 AD 657 (721)
Q Consensus 656 ~~ 657 (721)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 64
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=9.1e-05 Score=72.15 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004976 470 IDKALEMWKHLLELGHVPNSVTYSSMIDGFCKI---GMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRL 546 (721)
Q Consensus 470 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 546 (721)
.+++..+++..+..-...+...|..+...--.. ...+....+++++...-...-..+|..++..-.+..-...|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666777666543222333333333221111 12555666677666543222234677777777777888999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 004976 547 FIEIRNANCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGH 625 (721)
Q Consensus 547 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (721)
|.++.+.+..+ ++.....++..| -.++..-|..+|+-=+.. ...++..-...+..+...++-+.|+.+|++++..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998866555 445566666644 467888999999876664 234445556677778888999999999999988755
Q ss_pred CCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 626 KPN--ACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 626 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+++ ..+|..++.--..-|+...++++-++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 544 46888888888888999998888887765
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=3e-07 Score=85.95 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=131.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hh
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVP--NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTL--FD 526 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 526 (721)
+.....+...+..+...|+++.|...+++++...+.. ....+..++.++...|++++|...++++.+..+.... ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3456678888888899999999999999988865431 1246677888889999999999999999876432111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 004976 527 YNALMASLCKE--------SSLEQAKRLFIEIRNANCEPDVV-SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTY 597 (721)
Q Consensus 527 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 597 (721)
+..++.++... |++++|.+.|+++.... |+.. .+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 55666666654 67888888888888754 4432 2221111100 000 00 0112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVASG--HKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..++..+...|++.+|+..+++++... .+.....+..++.++...|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777889999999999999998762 123467889999999999999999999998875
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=3.6e-07 Score=80.38 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=91.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004976 100 PSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIV 179 (721)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 179 (721)
.+..+ ......+...|+-+....+....... .+.+..+....+....+.|++..|+..|.++.... ++|...|+.+.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 33444 55555555666666655555554322 23344555555666666666666666666665543 55566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChh
Q 004976 180 NGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFD 259 (721)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 259 (721)
.+|.+.|++++|..-|.+..+.. +.+....+.++-.+.-.|+++.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 66666666666666666665542 223344555555555566666666666665554322 5555555666666666666
Q ss_pred HHHHHHHH
Q 004976 260 KGKKLFDD 267 (721)
Q Consensus 260 ~A~~~~~~ 267 (721)
.|..+...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 66555443
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=0.00017 Score=74.80 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=103.3
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 34 ETQLRLLFEKP-NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVF 112 (721)
Q Consensus 34 ~~~l~~l~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (721)
+.++|.++..- -+++..|++-.++.+...|. ...+-..-+-.+.+.|+.++|..+++.....+ +.|..++..+-.+|
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVY 87 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHH
Confidence 34555555422 35889999999999886543 33333334556788999999997777766554 45788889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 113 VQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC 183 (721)
Q Consensus 113 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (721)
...+..++|..+|+++.... |+......+..+|.|.+++.+-.+.--++-+. ++.+...+=++++.+.
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 99999999999999998764 34788888889999999988877666666654 2334444334444443
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=1.2e-07 Score=84.32 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=88.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHH-HhcCC--hhHH
Q 004976 80 SKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGF-CRKGE--VNKA 156 (721)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 156 (721)
.++.++++..+++.++.+ |.+...|..++..+...|+++.|...|+++.+.++ .+..++..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777777765 67777777777777777777777777777777653 3666777776653 56566 4777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 004976 157 IELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI 208 (721)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 208 (721)
..++++.++.+ +.+..++..+...+.+.|++++|+..++++.+.. +|+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 77777777774 4466677777777777788888888777777654 34443
No 121
>PF13041 PPR_2: PPR repeat family
Probab=98.86 E-value=5.4e-09 Score=69.18 Aligned_cols=49 Identities=45% Similarity=0.996 Sum_probs=27.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHH
Q 004976 205 PNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFC 253 (721)
Q Consensus 205 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (721)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=7.3e-07 Score=78.53 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMIN 567 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 567 (721)
|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+.++.... ++|...|+.++-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 556666777777777777776654432 3355566667777778888888888888887754 457778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhH
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 647 (721)
+|.+.|+.++|..-|.++.+.. +.++...++++-.+.-.|+.+.|..++......+ +-+..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 8888888888888888888752 4455677788888888888888888888887653 4467777778888888888888
Q ss_pred HHHHHHHHH
Q 004976 648 VFDLIHEMA 656 (721)
Q Consensus 648 A~~~~~~~~ 656 (721)
|.++..+-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 877766543
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=1.3e-06 Score=87.82 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=153.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMG 391 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (721)
...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..++ +|++..|..++..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 334455667777778788888777754 34556677777788888888777777663 5677777777777
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 392 IGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIID 471 (721)
Q Consensus 392 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (721)
.....-+++|.++.+..... +-..+.....+.+++.++.+.++.-.+.+ +-...+|...+.+..+.+++.
T Consensus 467 ~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 66666677777777665431 22222333344677888888887776665 556777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 472 KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIR 551 (721)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 551 (721)
.|.+.|...+...+. +...|+.+..+|.+.++-.+|...++++.+.+ ..+..+|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 888888887776544 66778888888888888888888888887765 4456667777777777888888888887776
Q ss_pred H
Q 004976 552 N 552 (721)
Q Consensus 552 ~ 552 (721)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=3.6e-07 Score=76.82 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 004976 510 GIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG 589 (721)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 589 (721)
.++++.++. .|+ .+..++..+...|++++|...|+.++..+ +.+...+..++.++...|++++|+..|+++....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555544 333 24456677777888888888888887754 3356677788888888888888888888888754
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 590 LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
+.+...+..++.++...|++++|+..|++++... +.++..+...+.+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5566777888888888888888888888888763 4555555555444
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=2.1e-06 Score=90.83 Aligned_cols=132 Identities=9% Similarity=0.064 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT-LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMI 566 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 566 (721)
+...+..+..+..+.|++++|..+++.+.+. .|+ ......++..+.+.+++++|...+++.+... +.+......++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4555555555555555555555555555554 222 3344455555555555555555555555533 11233444455
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.++.+.|++++|..+|+++...+ +.+..++..++.++...|+.++|...|+++++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555522 223455555555555555555555555555554
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=2.6e-06 Score=90.86 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------
Q 004976 64 LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG----------- 132 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------- 132 (721)
+.+...+..|+..+.+.+++++|.++++..+... |.....+...+..+.+.++.+.+..+ .++..-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3467778888888888888888888888776653 45555566666677777776666555 332221
Q ss_pred -------CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004976 133 -------FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCP 205 (721)
Q Consensus 133 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 205 (721)
...+..++..++.+|-+.|+.++|..+++++++.+ +.|..+.|.+...|... +.++|++++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 11122566666667777777777777777777765 55666777777766666 777777777665542
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcchHHHHH
Q 004976 206 NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK-GISPNVVTYNSLM 284 (721)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~ 284 (721)
+...+++..+..+++++....+. +...+. ++.+.+... |...-..++..+-
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHH
Confidence 44455666666666666654322 222222 222222211 1111233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004976 285 HCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLC 323 (721)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (721)
..|...+++++++.+++.+++.... |..+...++.+|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 5666667777777777777765322 4555555555554
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.79 E-value=3.6e-06 Score=89.83 Aligned_cols=270 Identities=12% Similarity=0.145 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 004976 382 VVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILI 461 (721)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 461 (721)
...+..++..+...+++++|.++.+..++..| .....|..++..+.+.++++++..+ . ++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P---~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK---KSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---cceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 44566666666666666666666665555322 1333344444445555544433333 1 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004976 462 GKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLE 541 (721)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 541 (721)
.......++.-...+...+...+ .+...+..++.+|-+.|+.++|..+++++++.. +.++.+.|.++..|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222233322222333333321 233456666666667777777777777776664 23566666666666666 677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 542 QAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 542 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
+|++++.+++.. +...+++..+.++|.++.... +.+...+..+. +++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------------~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------------RKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHH----------------HHHH
Confidence 777666666552 444456666666666666632 22223333222 2222
Q ss_pred HC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCchhhHhhHHHHHHhccCCCCc
Q 004976 622 AS-GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ-ELTSTILVCLCNISEDLDVAKLFPTFSQETSKGKS 699 (721)
Q Consensus 622 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (721)
.. |..--..++..+...|...++|++++.+++.+++ +.|++ .....++.++....++....+.+.++ ......+
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~--s~l~~~~ 290 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYKEKYKDHSLLEDYLKM--SDIGNNR 290 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHHHHccCcchHHHHHHH--hccccCC
Confidence 21 1222334566666778888899999999999998 66654 44445555544333333333333222 3334444
Q ss_pred ccHHHHHHHHhh
Q 004976 700 ISCKDLLLKLQE 711 (721)
Q Consensus 700 ~~~~~~~~~l~~ 711 (721)
....++++++-.
T Consensus 291 ~~~~~~i~~fek 302 (906)
T PRK14720 291 KPVKDCIADFEK 302 (906)
T ss_pred ccHHHHHHHHHH
Confidence 556666666543
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=5.9e-06 Score=72.15 Aligned_cols=188 Identities=13% Similarity=0.090 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHc---C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 469 IIDKALEMWKHLLEL---G-HVPNS-VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQA 543 (721)
Q Consensus 469 ~~~~A~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 543 (721)
+.++..+++.+++.. + ..++. ..+..++-+....|+.+.|..+++++...- +.+..+-..-+-.+...|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 445555555554432 1 22222 234445555567777778888887776652 22222222223334557788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 544 KRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+++++.++..+ +.|.+++..-+......|+.-+|++.+...++. +..|...|..+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888887765 335556655555666677777888877777776 5777888888888888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHcCCCC
Q 004976 624 GHKPNACVYDSLLKGFSSQG---ETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p 662 (721)
. |-++..+..++..++-.| +.+-|.++|.++++ +.|
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 2 556666677777755544 56677788888877 555
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7.5e-06 Score=72.13 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=148.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004976 147 FCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEA 226 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 226 (721)
+.-.|.+..++..-+..... +.++..-..+.++|...|.+.....-. .... .|.......+......-++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 34457777666655544433 234444445566677777654433222 1111 23333444444444344444444
Q ss_pred HH-HHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 227 MG-LLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMME 305 (721)
Q Consensus 227 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 305 (721)
+. +.+.+.......+......-+..|+..|++++|.+..+... +......-..++.+..+++-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 33444433333233344444566788888888888777622 334444445566777888888888888887
Q ss_pred CCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 004976 306 RGIRPDVVTYTCLIEGLCK----GGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPD 381 (721)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (721)
. .+..+...|+.+|.+ .+....|.-+|+++..+ .+|++.+.+..+.++...|++++|..+++.++.+... +
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 4 245566667776654 45677888888888775 5678888888888888888888888888888876433 6
Q ss_pred HHHHHHHHHHHhccCCHHHH-HHHHHHHHh
Q 004976 382 VVSYNTLLMGIGKFGKVDEA-LELFNLVLK 410 (721)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 410 (721)
+.++..++.+....|...++ .+.+.+...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 77777777666666665443 344444443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.2e-06 Score=90.71 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=128.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004976 521 DPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYST 599 (721)
Q Consensus 521 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 599 (721)
..+...+..|+......|.+++|..+++.+.+.. ||. .....++..+.+.+++++|+..++++.... +.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4458888999999999999999999999999854 665 477888899999999999999999999964 445677888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCN 676 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 676 (721)
++.++.+.|++++|.++|++++..+ +.+..++..++.++...|+.++|...|+++++. ..|....+..++.-+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~ 234 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVDLNA 234 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHHHHH
Confidence 9999999999999999999999853 667899999999999999999999999999985 45556666666665443
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.1e-05 Score=71.16 Aligned_cols=250 Identities=16% Similarity=0.152 Sum_probs=151.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
++.++=.|+|..++..-+..... +.+.....-+.++|...|.+....+-.... ..+...+...+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEG----KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccccccc----cCChHHHHHHHHHHhhCcchh
Confidence 34455567888777776665543 245556666777777777765444332222 222333344444444444444
Q ss_pred hHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 154 NKAI-ELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEE 232 (721)
Q Consensus 154 ~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (721)
+.-+ .+.+.+.......+......-...|...|++++|++...... +......-...+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 344555544322232222223345778888888888776522 333333344566677888888888888
Q ss_pred HhHCCCCCCccchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004976 233 MKAKGLDADVVVYSALISGFCS----NGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGI 308 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 308 (721)
|.+.. +..+.+.|+.++.+ .+.+.+|.-+|+++-++ .+|+..+.+..+.++...|++++|..+++..+....
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 87752 55566666666654 34678888888888764 467777888888888888888888888888887643
Q ss_pred CCChhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 004976 309 RPDVVTYTCLIEGLCKGGRATKA-IDLLNWMVK 340 (721)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 340 (721)
. ++.+..+++......|...++ .+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 566766666666666655443 344444443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=5.7e-07 Score=75.58 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=87.5
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 546 LFIEIRNANCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 546 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
.+++++..+ | +......++..+...|++++|.+.++.+...+ +.+...+..++.++...|++++|...+++++..+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555533 3 33456667777788888888888888887754 4566777888888888888888888888887764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 625 HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTI 670 (721)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (721)
+.+...+..++.++...|++++|...++++++ +.|+...+..+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 66777888888888888888888888888887 66666554433
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=1.1e-06 Score=73.78 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=91.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 54 LFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF 133 (721)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 133 (721)
.|++++..+|. +......++..+...|++++|...|+++...+ |.+...+..++.++...|+++.|..+++.+++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 56677777655 56777788888888899999999998888775 6677888888888888888888888888887775
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 004976 134 VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCS 174 (721)
Q Consensus 134 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 174 (721)
+.+...+..++..+...|+++.|...|+...+. .|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 446777777888888888888888888888876 344433
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.9e-05 Score=69.09 Aligned_cols=189 Identities=13% Similarity=0.042 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 004976 44 PNSQYAEAVSLFQRAICSDRL----P-SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKP 118 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (721)
...+.++.++++..++..... + --.+|-.+..+....|+.+.|..++.+.... +|.+......-+..+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 334556666666666543311 0 1123334455555566666666666665554 244444444444555556666
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 119 KFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDM 198 (721)
Q Consensus 119 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 198 (721)
++|.++|+..+..+ +.|...+-.-+...-..|+.-+|++-+...++. +..|..+|..+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666666554 234444444444455555555666655555554 3556666666666666666666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHhHC
Q 004976 199 EAVGCCPNLITYSTLMDGLCKDG---RVDEAMGLLEEMKAK 236 (721)
Q Consensus 199 ~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~ 236 (721)
.-.. |-+...+..+...+.-.| +...+.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5442 223333444444443333 334455555555554
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.4e-05 Score=71.73 Aligned_cols=270 Identities=12% Similarity=0.051 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIG 126 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 126 (721)
.|..|+..+..++...|. ++..|..-+..+...+++++|..-.+..++.. +..+.......+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhh
Confidence 566666666666666544 45555555555666666666666665555543 3334445555555555555555555444
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCC
Q 004976 127 LILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGV-SPDNCSYNTIV-NGLCKAKRFKEALDILPDMEAVGCC 204 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (721)
... ++ ....|+..++....... +|....|..+- .++.-.|++++|.+.--.+.+.. .
T Consensus 142 ~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 142 SKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred hhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 110 00 11111222222221111 12222333222 24455666666666666555543 1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCC-----------ccchHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 004976 205 PNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDAD-----------VVVYSALISGFCSNGSFDKGKKLFDDMLEKG- 272 (721)
Q Consensus 205 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 272 (721)
.+......-..++.-.++.+.|..-|++.+..++.-. ...+..-++-..+.|.+..|.+.|.+.+..+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 1222222222334445666666666666665533211 0112222344556777777777777776542
Q ss_pred --CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 273 --ISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 273 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
..|+...|........+.|+..+|+.-.+...+. .+. ...+..-+.++...+++++|.+-++...+.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334445666666667777777777777766653 111 233444455566667777777777776654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=6.4e-05 Score=72.63 Aligned_cols=119 Identities=17% Similarity=0.066 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh
Q 004976 458 NILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT-LFDYNALMASLCK 536 (721)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 536 (721)
......+...|+++.|+..+..++...+. |...+......+...++..+|.+.++++... .|+ ......++.+|.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 33333444455555555555555544322 4444444445555555555555555555544 222 3334444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 004976 537 ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARE 580 (721)
Q Consensus 537 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 580 (721)
.|++.+|+.+++...... +.|...|..|+.+|...|+..+|..
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555555555554433 2344455555555555555444433
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00018 Score=67.79 Aligned_cols=289 Identities=14% Similarity=0.062 Sum_probs=151.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQ 292 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (721)
....+.+..++..|+..+..+++..+. +...|..-+..+...|++++|.--.+..++.. +..........+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 344566677788888888888887555 57777777777777888888777666655432 1123344455556666666
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHH-HHHHHhcCCHhHHHHHH
Q 004976 293 WKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKG-EKLSVITYNVL-IKGLCQKGLVGEAYEIL 370 (721)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 370 (721)
..+|.+.++. ...+ ....++..++.+.... .+|.-..+..+ ..++.-.|++++|.+.-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 6666655541 1111 1112222222222211 12222333322 34556677788777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 371 NMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGI 450 (721)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 450 (721)
-..++.... +......-..++.-.++.+.|...|.+.+..+| +... .+..-.-.+.++.....
T Consensus 193 ~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp----dh~~----------sk~~~~~~k~le~~k~~-- 255 (486)
T KOG0550|consen 193 IDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP----DHQK----------SKSASMMPKKLEVKKER-- 255 (486)
T ss_pred HHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh----hhhh----------HHhHhhhHHHHHHHHhh--
Confidence 766665321 333333333455566777888888888776433 2111 11111111112222222
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhh
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGH---VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT-LFD 526 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 526 (721)
+.-..+.|.+..|.+.|.+.+..++ .++...|.....+..+.|+..+|+.--+...+. ++. +..
T Consensus 256 ----------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syika 323 (486)
T KOG0550|consen 256 ----------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKA 323 (486)
T ss_pred ----------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHH
Confidence 2234456666666666666665432 234445555555566666666666666655544 211 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 527 YNALMASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 527 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 552 (721)
+..-+.++...+++++|.+.|+++.+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555556666666666666655
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00012 Score=70.79 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=83.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHH
Q 004976 100 PSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD-NCSYNTI 178 (721)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 178 (721)
.....++.....+...|.++.|+..+...++. .+.|++.+......+.+.++..+|.+.+++++.. .|+ ...+..+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 33444555555555666666666666665544 3345555666666666666666666666666655 233 3444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCCh
Q 004976 179 VNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSF 258 (721)
Q Consensus 179 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 258 (721)
..+|.+.|++.+|+.+++...... +.|...|..|..+|...|+..++..... ..|...|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~ 441 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRL 441 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCH
Confidence 556666666666666666655443 3455566666666666665555443332 223344556
Q ss_pred hHHHHHHHHHHhC
Q 004976 259 DKGKKLFDDMLEK 271 (721)
Q Consensus 259 ~~A~~~~~~~~~~ 271 (721)
+.|...+....+.
T Consensus 442 ~~A~~~l~~A~~~ 454 (484)
T COG4783 442 EQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHh
Confidence 6666655555544
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.9e-06 Score=76.36 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=53.2
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHH
Q 004976 569 TLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEV 648 (721)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 648 (721)
..+.+++++|+..|.++++.. |.|...|..-+.+|.+.|.++.|++-++.++..+ +-....|..|+.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 344555555555555555532 3334444455555555555555555555555542 22344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 649 FDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
++.|+++++ +.|+..+|..-|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 555555555 55555555444443
No 140
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=4.4e-05 Score=63.28 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
++..+++|.+-++.+ |+..--..++.++.+.|++.+|...|++++..-...+...+..+.++....+++..|..
T Consensus 72 P~R~~Rea~~~~~~A------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 72 PERHLREATEELAIA------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hhHHHHHHHHHHhhc------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 455566666666554 35555667888888888888888888888876666677778888888888888888888
Q ss_pred HHHHHHHCCCC-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 124 VIGLILKRGFV-VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDME 199 (721)
Q Consensus 124 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 199 (721)
.++..-+..+. .+++....+.+.|...|.+.+|+..|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88887655422 23445566677788888888888888888776 5555554445556677777766655554443
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=1.7e-05 Score=65.25 Aligned_cols=95 Identities=5% Similarity=-0.053 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
....++..+...|++++|..+|+-+.... +-+...|..|+-++-..|++++|+..|..+...+ +.++..+..++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444455556666666666666665532 2334455566666666666666666666666554 455566666666666
Q ss_pred cCCChhHHHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMAD 657 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~ 657 (721)
..|+.+.|.+.|+.++.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.1e-05 Score=66.58 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCH
Q 004976 536 KESSLEQAKRLFIEIRNANCEPD---VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLL 610 (721)
Q Consensus 536 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 610 (721)
..++...+...++.+.... +.+ ......++..+...|++++|...|+.+......|+. .....++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3666777777777777643 112 123444556677777788888887777775412221 2345567777777888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 611 SDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 611 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
++|+..++..... ...+..+...+.+|.+.|++++|...|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888777664322 334556667777788888888888777765
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=2.9e-05 Score=65.70 Aligned_cols=115 Identities=10% Similarity=-0.012 Sum_probs=52.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCChh
Q 004976 80 SKNYEYAFSVYSKMTCVHIFPS---FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN--IYAFNLILKGFCRKGEVN 154 (721)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 154 (721)
.++...+...++.+...+ +.+ ......++..+...|++++|...|+.++...+.+. ..+...++..+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555543 222 12233444555555555555555555554432221 123334445555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 155 KAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPD 197 (721)
Q Consensus 155 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 197 (721)
+|+..++..... ......+.....+|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443222 12223344444455555555555555543
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=4e-05 Score=63.06 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 524 LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHR 603 (721)
Q Consensus 524 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (721)
......++..+...|++++|.++|+.+...+ +-+...|..|+.++...|++++|+..|..+.... +.|+..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4455667777888999999999999998855 2355678889999999999999999999999976 5678899999999
Q ss_pred HHhcCCHhHHHHHHHHHHHC
Q 004976 604 FLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~ 623 (721)
+...|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.30 E-value=1.6e-05 Score=78.44 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=71.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004976 566 INGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGET 645 (721)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 645 (721)
+..+...|++++|++.|+++++.. +.+...|..++.+|...|++++|+..+++++... +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445566677777777777777753 4445666777777777777777777777777763 55666777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 646 EEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
++|+..|+++++ +.|+......++..
T Consensus 87 ~eA~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 777777777776 66666555555544
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=9.2e-06 Score=73.26 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVI 125 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 125 (721)
++|.+|+..|.+++..+|. ++..|-.-+.+|.+.|.++.|++-++.++..+ |....+|..++.++...|++.+|.+.|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 4666666666666666544 44444445566666666666666666666654 455556666666666666666666666
Q ss_pred HHHHHCC
Q 004976 126 GLILKRG 132 (721)
Q Consensus 126 ~~~~~~~ 132 (721)
.++++.+
T Consensus 173 kKaLeld 179 (304)
T KOG0553|consen 173 KKALELD 179 (304)
T ss_pred HhhhccC
Confidence 6665554
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=3.2e-05 Score=75.67 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRF 607 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (721)
..|+..+...++++.|+.+|+++.+.. |+. ...++..+...++..+|.+++++.++.. +.+...+...+..+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344445555667777777777776643 433 3345666666666777777777776642 44555556666667777
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 608 GLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 608 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
++++.|+++.++++... |.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777652 4455677777777777777777777776665
No 148
>PF12854 PPR_1: PPR repeat
Probab=98.23 E-value=1.8e-06 Score=50.92 Aligned_cols=32 Identities=44% Similarity=0.940 Sum_probs=16.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 167 GVSPDNCSYNTIVNGLCKAKRFKEALDILPDM 198 (721)
Q Consensus 167 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 198 (721)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=2.1e-06 Score=64.60 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRL-PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
+++|+.|+.+|++++..++. ++...+..++.++.+.|++++|+.++++ ...+ +.+......+++++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46788888888888876653 2455666678888888888888888877 3332 2334455566788888888888887
Q ss_pred HHHHH
Q 004976 124 VIGLI 128 (721)
Q Consensus 124 ~~~~~ 128 (721)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.18 E-value=0.0064 Score=57.27 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=130.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH--HHHHHHHH--HH-hcCC
Q 004976 431 KEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGH-VPNSV--TYSSMIDG--FC-KIGM 504 (721)
Q Consensus 431 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~--~~~~l~~~--~~-~~g~ 504 (721)
+.|..+.|..+-+.....- +.-...+...+...+..|+++.|+++.+.-....+ .++.. .-..++.+ .. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4555555555555554432 22334445555555666666666666655443211 11111 11111111 11 1223
Q ss_pred HHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004976 505 LNIAKGIFSKMRVSGNDPTLF-DYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYN 583 (721)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 583 (721)
...|...-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+...+|+.... ..+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l----Y~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL----YVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH----HHHhcCCC--cHHHHHH
Confidence 55566666666554 45522 3334567788899999999999999887655554321 12334444 3444444
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHcCC
Q 004976 584 NMLQM-GLPP-DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ-GETEEVFDLIHEMADKGV 660 (721)
Q Consensus 584 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 660 (721)
++... .++| +.+....+..+-...|++..|..--+.+... .|....|..|.+.-... |+-.++..++-+.++..-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 43322 1334 4567777888888899999998888887764 68888888888885554 999999999999887555
Q ss_pred CC
Q 004976 661 HL 662 (721)
Q Consensus 661 ~p 662 (721)
.|
T Consensus 395 dP 396 (531)
T COG3898 395 DP 396 (531)
T ss_pred CC
Confidence 55
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00017 Score=69.00 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCc------cchH
Q 004976 180 NGLCKA-KRFKEALDILPDMEAV----GCCPN--LITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADV------VVYS 246 (721)
Q Consensus 180 ~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~ 246 (721)
..|... |++++|++.|++.... + .+. ..++..++..+.+.|++++|.++|+++.......+. ..+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 344444 6666666666665432 1 111 123445556666666666666666666543221111 1122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 247 ALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
..+-++...||...|...+++....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3334455556666666666665543
No 152
>PF12854 PPR_1: PPR repeat
Probab=98.18 E-value=2.9e-06 Score=50.07 Aligned_cols=32 Identities=63% Similarity=1.233 Sum_probs=20.9
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 202 GCCPNLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 202 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00013 Score=66.55 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=52.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChhhH
Q 004976 99 FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKG---EVNKAIELFGEIKSNGVSPDNCSY 175 (721)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 175 (721)
|.|...|..++..|..+|+++.|...|.++.+.. ++++..+..++.++..+. ...++..+|+++++.+ +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4555555555555555555555555555555543 234555544444443221 2344555555555553 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 176 NTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 176 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
..|...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555554
No 154
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.17 E-value=0.0068 Score=57.10 Aligned_cols=311 Identities=13% Similarity=0.094 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcCChhHHHHH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEAL--VRSKNYEYAFSVYSKMTCVHIFPSFLSLSGL--IEVFVQTQKPKFALGV 124 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~ 124 (721)
..+.++|..... ...|..|-..+ .-.|+-..|.++-.+..+. +..|...+..+ .+.-.-.|+++.|.+-
T Consensus 70 ~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 355566654432 12233333333 3457777887777766543 23344433333 3445567888888888
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG-C 203 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 203 (721)
|+.|+.. +..-..-...+.-.-.+.|..+.|...-+.....- +.=.-.+...+...+..|+++.|+++.+.-.... +
T Consensus 143 feAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 143 FEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 8888531 11111112222223346788888888777776652 2234466777778888888888888887665432 2
Q ss_pred CCCHhh--HHHHHHH--HH-hcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 004976 204 CPNLIT--YSTLMDG--LC-KDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVV 278 (721)
Q Consensus 204 ~p~~~~--~~~l~~~--~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 278 (721)
.++..- -..|+.+ .. -..+...|...-.+..+..+. -...-..-..++.+.|+..++-.+++.+-+....|+
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pd-lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-- 297 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPD-LVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-- 297 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--
Confidence 333321 1112211 11 123556666666666554322 122334455677888888888888888877644443
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 279 TYNSLMHCLCKIGQWKEAIAMLDAMMER-GIRPD-VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKG 356 (721)
Q Consensus 279 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (721)
.+. +..+.+.|+. ++.-+++..+. .++|| ......+.++....|++..|..--+..... .|....|..|.++
T Consensus 298 ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdI 371 (531)
T COG3898 298 IAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADI 371 (531)
T ss_pred HHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHH
Confidence 222 2223344443 33333332221 13343 556667777777888888877766666554 5667777777776
Q ss_pred HHh-cCCHhHHHHHHHHHHHCC
Q 004976 357 LCQ-KGLVGEAYEILNMMIEKG 377 (721)
Q Consensus 357 ~~~-~~~~~~a~~~~~~~~~~~ 377 (721)
-.. .|+-.++...+.+.++..
T Consensus 372 eeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhhccCchHHHHHHHHHHhcCC
Confidence 544 488888888888887653
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=6.5e-05 Score=61.38 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHhHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS---FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVV--NIYAFNL 142 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ 142 (721)
.++..++..+.+.|++++|...|++++..+ |.+ ...+..++.++.+.|+++.|...++.+....+.. .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 345666777777777777777777777653 222 3455666777777777777777777766543321 2445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 004976 143 ILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 143 l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666677777777777777777665
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=2.9e-05 Score=60.62 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (721)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++.+.... +.+...+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555566666666666666666542 3333555566666666666777777666666653 4444566666666666
Q ss_pred CCChhHHHHHHHHHHH
Q 004976 642 QGETEEVFDLIHEMAD 657 (721)
Q Consensus 642 ~g~~~~A~~~~~~~~~ 657 (721)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777766666654
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=9.5e-05 Score=72.43 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004976 494 SMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAG 573 (721)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 573 (721)
.++..+...++++.|+.+++++.+. .|+ ....++..+...++..+|++++++.++.. +.+...+...+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3344444455555555555555544 222 22334445555555555555555555432 223444444455555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 574 DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (721)
+++.|+.+.+++.+.. |.+..+|..|+.+|...|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555655555555532 223345555555555666666555555443
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.00063 Score=62.83 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLS---LSGLIEVFVQTQKPKFALGVIGLILKRGFV 134 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 134 (721)
+...+...+..+...|++++|+..|+.++... |.++.. ...++.++.+.++++.|...++++++..|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 44445555666666677777777777776653 333332 245566666677777777777666665443
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=7.6e-05 Score=60.99 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHH
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASG--HKPNACVYDSL 635 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 635 (721)
+..++..+...|++++|.+.|+.+.+.. |+ ...+..++.++...|++++|...++++.... .+....++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4445555566666666666666665532 22 2344556666666666666666666666531 01124455666
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 004976 636 LKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 636 ~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.++.+.|++++|...++++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 6666666666666666666665
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.12 E-value=0.00076 Score=56.21 Aligned_cols=133 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhH
Q 004976 521 DPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD---ALTY 597 (721)
Q Consensus 521 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 597 (721)
.|+...-..|+.++...|++.+|...|++...--+..|...+..+.++....++..+|...++.+.+.. |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455566667777777888888888888877764444566677777777788888888888888877742 32 2344
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..+++.+...|++.+|+..|+.+++. -|++..-...+..+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56677778888888888888888774 56666555566677778877777665555443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=5.1e-06 Score=62.50 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 004976 572 AGDLQSARELYNNMLQMGL-PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFD 650 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 650 (721)
.|+++.|+.+++++.+... .++...+..++.++.+.|++++|.+++++ ...+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3566666666666666421 01334444566666666666666666666 2221 2233444455666666666666666
Q ss_pred HHHH
Q 004976 651 LIHE 654 (721)
Q Consensus 651 ~~~~ 654 (721)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.10 E-value=0.011 Score=56.82 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 004976 490 VTYSSMIDGFCKIGMLNIAKGIFSKMRVSG-NDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSF-NTMIN 567 (721)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 567 (721)
..|-..+.+..+..-.+.|..+|-++.+.+ ..+++.++++++..+ ..|++..|.++|+.-...- ||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 345555566666666777788888777776 456666777777644 3677777888877655532 444433 33444
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPD--ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.+...++-..|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 556677777777777765553 2233 456777777667777777777666666553
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.09 E-value=4.5e-05 Score=71.47 Aligned_cols=132 Identities=13% Similarity=0.015 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 004976 491 TYSSMIDGFCKIGMLNIAKGIFSKMR----VSGNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRNA----NC-EPDVV 560 (721)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~ 560 (721)
.|..++..|.-.|+++.|+...+.-+ +.|... ....+..++.++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666777777776655432 222211 1335666777777778888888777765431 21 11223
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM-----GLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
....|++.|.-...+++|+.++.+-+.. +.--....++.|+.++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777777777777654331 1112345667777777777777777777665543
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=0.00011 Score=72.39 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=51.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+..++..|++++|+..|+++++.+ |.+...+..++.++...|++++|+..+++++..++ .+..++..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 445555556666666666665553 44455555555555566666666666655555532 2455555555556666666
Q ss_pred hHHHHHHHHHHhC
Q 004976 154 NKAIELFGEIKSN 166 (721)
Q Consensus 154 ~~A~~~~~~~~~~ 166 (721)
++|+..|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=7.4e-05 Score=58.22 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
+..++..+...|++++|+..|+++++.. +.+...+..++.++...++++.|.+.++.+.+..+ .+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4556666677777777777777776653 34445566666666666667777766666665532 244555666666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 004976 150 KGEVNKAIELFGEIKSN 166 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~ 166 (721)
.|+++.|...++...+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 66666666666666543
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00027 Score=64.55 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHhHHHHHHH
Q 004976 542 QAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG---LLSDAKSVYQ 618 (721)
Q Consensus 542 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 618 (721)
....-++.-+..+ +-|...|..|+.+|...|+...|...|.++.+.. ++++..+..++.++..+. ...++..+++
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3333344444444 3477789999999999999999999999998863 566677777777766543 3667888999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 619 KMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
+++..+ +.+......|+..+...|++.+|...|+.|++ .-|.+..+..++.
T Consensus 218 ~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie 268 (287)
T COG4235 218 QALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIE 268 (287)
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHH
Confidence 998875 66788888888889999999999999999988 5555555555544
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.025 Score=57.51 Aligned_cols=205 Identities=10% Similarity=-0.011 Sum_probs=104.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004976 99 FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR-GFV--------VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVS 169 (721)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 169 (721)
.|.+..|..++......-.++-|...|-+...- |.+ .+.....+=+.+ --|++++|++++-.+-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 356666777776666666666666555544211 000 000011111111 2367777777776665442
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHH
Q 004976 170 PDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG-CCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSAL 248 (721)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 248 (721)
.-+..+.+.|++-...++++.--... -..-...|+.+...+.....+++|.++|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 23445666677766666654321110 000123566677777666677777766654321 1235
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 004976 249 ISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRA 328 (721)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 328 (721)
+.++.+..++++-+.+.+.+ +.+....-.++.++.+.|.-++|.+.+-+... |. ..+..+...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHH
Confidence 56666666666555444433 23455556666777777777777666533221 11 223344455566
Q ss_pred HHHHHHHHH
Q 004976 329 TKAIDLLNW 337 (721)
Q Consensus 329 ~~a~~~~~~ 337 (721)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 666555443
No 168
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.99 E-value=0.018 Score=55.65 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCCCCCh----hhHHHHHHH--HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHH
Q 004976 575 LQSARELYNNMLQMGLPPDA----LTYSTLIHR--FLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEV 648 (721)
Q Consensus 575 ~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 648 (721)
..+-..+-+-+.+.|++|-. ..-+.|.++ +..+|++.++.-+-.-..+ +.|++.+|..+|-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 44444444445555666543 333444443 4578888888776666665 467888888888888888888888
Q ss_pred HHHHHHH
Q 004976 649 FDLIHEM 655 (721)
Q Consensus 649 ~~~~~~~ 655 (721)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 8888774
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=3e-05 Score=54.87 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ 664 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 664 (721)
++..+...|++++|++.|+++++.. |.+...+..++.++...|++++|..+++++++ ..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4566777777777777777777764 55667777777777777777777777777776 55554
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.98 E-value=0.00029 Score=61.72 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPD--VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHR 603 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (721)
.+..++..+...|++++|...|++++.....+. ...+..++.++...|++++|+..++++++.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555556666666666665554321111 2345555555555566666666555555532 2233444455555
Q ss_pred HHhcCCHhHHH
Q 004976 604 FLRFGLLSDAK 614 (721)
Q Consensus 604 ~~~~g~~~~A~ 614 (721)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=2.5e-05 Score=56.15 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=45.2
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHHHH
Q 004976 593 DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQG-ETEEVFDLIHEMAD 657 (721)
Q Consensus 593 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 657 (721)
+..+|..++..+...|++++|+..|+++++.+ +.+...|..++.++...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777764 556667777777777777 57777777777766
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0019 Score=59.66 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=111.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004976 453 NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSV--TYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNAL 530 (721)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (721)
+...+...+..+...|++++|.+.|+.+....+.+... ....++.++.+.+++++|...+++.++..+.....-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44555556666777888888888888888765443211 1245667778888888888888888876433222222222
Q ss_pred HHHHH--hcC---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 004976 531 MASLC--KES---------------S---LEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGL 590 (721)
Q Consensus 531 ~~~~~--~~~---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 590 (721)
..+.+ ..+ + ..+|+..|+++++.- |+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hhHHHHHHHHHHHHHH--
Confidence 22221 111 1 123444555555432 332 2233333333333221
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS--GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
- ...-..++..|.+.|.+..|+.-++.+++. +.+...+.+..++.+|...|..++|.++...+.
T Consensus 174 -l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011125667788999999999999999976 334456778888899999999999988877654
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0016 Score=62.29 Aligned_cols=143 Identities=13% Similarity=0.181 Sum_probs=87.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKE-SSLEQAKRLFIEIRNA----NCEPD--VVSFNTMINGTL 570 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 570 (721)
.|...|++..|-.++. .++..|... |++++|++.|+++... + .+. ...+..++..+.
T Consensus 103 ~y~~~G~~~~aA~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 4556666665555444 344556666 8888888888887762 2 111 135566778888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC-----h-hhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 004976 571 KAGDLQSARELYNNMLQMGLPPD-----A-LTYSTLIHRFLRFGLLSDAKSVYQKMVAS--GHKPN--ACVYDSLLKGFS 640 (721)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~ 640 (721)
+.|++++|+++|+++.......+ . ..+...+-++...||...|.+.+++.... ++..+ ......++.++.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999998887532222 1 22334455677889999999999998765 22223 345666676665
Q ss_pred cC--CChhHHHHHHHHHH
Q 004976 641 SQ--GETEEVFDLIHEMA 656 (721)
Q Consensus 641 ~~--g~~~~A~~~~~~~~ 656 (721)
.. ..+++|+.-|+++.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 53 34666666666653
No 174
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=6.8e-05 Score=70.32 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHH
Q 004976 280 YNSLMHCLCKIGQWKEAIAMLDAMME----RGI-RPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK-----GEKLSVIT 349 (721)
Q Consensus 280 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~ 349 (721)
+..++.++.-.|+++.|.+.|+.... .|- .........+...|.-..++++|+.++.+-+.. ...-....
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44444444444444444444443321 110 111333444444444444455554444432211 01112334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 350 YNVLIKGLCQKGLVGEAYEILNMM 373 (721)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~ 373 (721)
+..++.++...|..++|+...+..
T Consensus 318 cwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445555555555555555444433
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00054 Score=70.68 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=92.6
Q ss_pred CCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHHH
Q 004976 521 DPTLFDYNALMASLCK--E---SSLEQAKRLFIEIRNANCEPDV-VSFNTMINGTLKA--------GDLQSARELYNNML 586 (721)
Q Consensus 521 ~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 586 (721)
+.+...|...+++... . ++...|+.+|+++++.+ |+. ..+..++.++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445555555544322 2 23566777777777643 443 2333333333211 12344455555544
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 004976 587 QM-GLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 587 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 665 (721)
.. ..+.+...+..++......|++++|...++++++.+ |+...|..++.++...|+.++|...++++.. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 43 123455777777777778899999999999999864 5788899999999999999999999999988 788777
Q ss_pred HHH
Q 004976 666 LTS 668 (721)
Q Consensus 666 ~~~ 668 (721)
+|+
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 654
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00062 Score=54.23 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 004976 563 NTMINGTLKAGDLQSARELYNNMLQMGLPPD--ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKP---NACVYDSLLK 637 (721)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 637 (721)
..++.++...|+.++|+.+|++.+..|+... ...+..++.++...|++++|..++++..... +. +......+..
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHH
Confidence 3456667777777777777777777664443 2455667777777777777777777776641 22 3334444555
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 004976 638 GFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~ 656 (721)
++...|+.++|++.+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6777777777777776654
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.012 Score=52.33 Aligned_cols=146 Identities=10% Similarity=0.146 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCChhhHHHHH
Q 004976 527 YNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG-----LPPDALTYSTLI 601 (721)
Q Consensus 527 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~ 601 (721)
.+.++.++.-.|.+.-....+++.++.+.+.++.....+++.-.+.|+.+.|..+|++..+.. +..+..+..+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345566666677777777888888776656677777778888888888888888888665542 222223333444
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004976 602 HRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLC 675 (721)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 675 (721)
..+.-..++.+|...+.++...+ +.++...+.-+-++.-.|+..+|++.++.|.+ ..|...+...++.++|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNLT 330 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHHH
Confidence 55666778888888888887764 55666666667777778888888888888887 6676666665555544
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00052 Score=60.13 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFP--SFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLI 143 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 143 (721)
....+..++..+...|++++|+..|++++.....+ ....+..++.++...|++++|...+..+++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 55677888888999999999999999998764222 23578888888999999999999999988764 3356777777
Q ss_pred HHHHHhcCChhHHHHHHH
Q 004976 144 LKGFCRKGEVNKAIELFG 161 (721)
Q Consensus 144 ~~~~~~~g~~~~A~~~~~ 161 (721)
+..+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 888888777555444333
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=3.6e-05 Score=55.16 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=48.8
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 605 LRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
...|++++|++.|+++.... |.+..++..++.+|.+.|++++|.++++++.. ..|++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 45688888888888887763 56777888888888888888888888888887 6677666665554
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=4.5e-05 Score=54.84 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCC
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQ-KPKFALGVIGLILKRG 132 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 132 (721)
++.+|..++..+...|++++|+..|+++++.+ |.+...+..++.++...| ++.+|++.++.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46678888888888888888888888888875 666777888888888888 6888888888877653
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.00068 Score=53.99 Aligned_cols=95 Identities=16% Similarity=0.033 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHhHHHHHH
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS--FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYAFNLILK 145 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 145 (721)
...++.++-..|+.++|+.+|++++..+.... ...+..++..+...|++++|..+++......+. .+..+...+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44556666667777777777777776654333 234556666666666777766666666544221 12223333344
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 004976 146 GFCRKGEVNKAIELFGEIK 164 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~ 164 (721)
++...|+.++|+..+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5566666666666665544
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00025 Score=67.33 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 491 TYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK-ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGT 569 (721)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 569 (721)
+|..++...-+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555555321 2233444444444222 34444455555555543 223444455555555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 570 LKAGDLQSARELYNNMLQMGLPPDA---LTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
...|+.+.|..+|++.+.. ++++. ..|..++..-.+.|+.+...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22222 2455555555555555555555555554
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00037 Score=60.83 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHH
Q 004976 48 YAEAVSLFQRAICSD-RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFP--SFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 48 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
+..+...+...+... .......|..++..+...|++++|+..|++++.....+ ...++..++.++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555544322 22346677888888888999999999999998663222 234677888888888888888888
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHH
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFC 148 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~ 148 (721)
++.++... +.....+..++..+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 88887764 334455666666665
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00033 Score=61.17 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPP--DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
.+..++..+...|++++|+..|++++.....+ ...++..++.++...|++++|+..+++++... +.....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 33444444445555555555555554431111 11244555555555555555555555555431 2233344444444
Q ss_pred HH
Q 004976 639 FS 640 (721)
Q Consensus 639 ~~ 640 (721)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.018 Score=58.49 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=112.0
Q ss_pred CCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCC
Q 004976 239 DADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHC----------LCKIGQWKEAIAMLDAMMERGI 308 (721)
Q Consensus 239 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~ 308 (721)
.|.+..|..++......-.++-|+..|-+...- +.......+... -.--|++++|.++|-++..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--
Confidence 356667777777777777777777776655432 122111111111 12237788888877666544
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 004976 309 RPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK-GEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNT 387 (721)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (721)
| ..+..+.+.|++-...++++.--.. ....-...|+.++..+.....|++|.+.|..-... ..
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 1 2345566677776665555431110 00112356777777777777788888777654321 12
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004976 388 LLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTA 467 (721)
Q Consensus 388 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (721)
.+.++.+...+++-..+-+.+ +.+...+-.++.++.+.|.-++|.+.|-+.. .|. ..+..+...
T Consensus 828 ~~ecly~le~f~~LE~la~~L-------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~L 891 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVEL 891 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-------CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHH
Confidence 344444444444433333322 2355666677777888887777777664322 111 223455566
Q ss_pred CCHHHHHHHHHHH
Q 004976 468 GIIDKALEMWKHL 480 (721)
Q Consensus 468 ~~~~~A~~~~~~~ 480 (721)
.+|.+|.++-+..
T Consensus 892 nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 6676776665544
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=9.9e-05 Score=52.20 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 73 LMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR 131 (721)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 131 (721)
++..+...|++++|+..|+++++.+ |.+...+..++.++.+.|++++|...|+.+++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555553 445555555555555555555555555555544
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.0016 Score=58.69 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI--FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF 133 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 133 (721)
+...+...+..+...|++.+|+..|+.+....+ +-...+...++.++.+.|++..|...++..++.-|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 455566667777778888888888888776631 22234566777777777777777777777776533
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00065 Score=64.61 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ-TQKPKFALGVIGLILKRGFVVNIYAFNLILKGF 147 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (721)
+|..++...-+.+..+.|+.+|.++...+ ......|...+..-.. .++.+.|..+|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666677777777777777777776432 3445555555555444 45555577777777665 455666777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDN---CSYNTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
...|+.+.|+.+|++.+.. ++++. ..|...+..=.+.|+.+.+.++.+++...
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777655 22222 35666666666667777777776666654
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0022 Score=66.29 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
..+..++-.....|++++|...+++++.. .|+...|..++.++...|+.++|.+.++++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444444444455555555555555553 244555555555555555555555555555543
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.72 E-value=0.00097 Score=62.04 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHH
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGLPPDA----LTYSTLIHRFLRFGLLSDAKSVYQKMVAS--GHKPNACVYDSL 635 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 635 (721)
|........+.|++++|+..|+.+++. .|+. ..+..++.+|...|++++|...|++++.. +-+..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333345567788888888887774 2432 46677788888888888888888888764 112245566677
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 004976 636 LKGFSSQGETEEVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 636 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 665 (721)
+.++...|++++|..+|+++++ ..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 7778788888888888888877 455544
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00012 Score=52.43 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
.|+|++|++.|++++..+|. +.+++..++.++.+.|++++|..+++++....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45777777777777776655 67777777777777777777777777777654
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.68 E-value=0.06 Score=52.04 Aligned_cols=144 Identities=19% Similarity=0.328 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH-HHHHH
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNAN-CEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTY-STLIH 602 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 602 (721)
.+|...+....+..-.+.|+.+|-++.+.+ +.+++..++.++.. ...|+...|-.+|+--... -||...| +....
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345566666667777999999999999977 45677777777774 4568899999999976663 3555444 55666
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 603 RFLRFGLLSDAKSVYQKMVASGHKPN--ACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
.+...++-+.|..+|++.+.. +..+ ..+|..++.--..-|+...+..+=+++.+ +.|...+.....+-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 778899999999999988765 2333 56899999988899999999999999988 778776665555543
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00026 Score=51.55 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 602 HRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTI 670 (721)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (721)
..|.+.+++++|.+.+++++..+ |.++..|...+.++...|++++|.+.++++++ ..|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 45667777777777777777764 55666777777777777777777777777776 55655554443
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.67 E-value=0.083 Score=53.42 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 004976 209 TYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLC 288 (721)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 288 (721)
.|..++.---...+.+.+...+..++.. .|.--..|...+..-.+.|..+.+.++|++.+.. ++.....|......+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Confidence 3444443322333334444455555433 2222233444444445556666666666665542 3434444444333332
Q ss_pred -hcCCHHHHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 289 -KIGQWKEAIAMLDAMMER-GIR-PDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 289 -~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
..|+.+...+.|+..... |.. .....|...+..-...+++.....+++++++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 335555555555555442 110 12334445555445555555555566555543
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.0066 Score=54.68 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 387 TLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAER 448 (721)
Q Consensus 387 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 448 (721)
..+......|++.+|.+.|+.+....|..+........++.++.+.|+++.|...+++.++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344444555555555555555443333333344445555555555555555555555443
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.57 E-value=0.12 Score=52.43 Aligned_cols=421 Identities=13% Similarity=0.095 Sum_probs=210.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHH
Q 004976 170 PDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI-TYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSAL 248 (721)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 248 (721)
.+-..|..++.---.....+.+...+..++.. .|... -|...+..-.+.|..+.+.++|++.+. +++.+...|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34456666665433444456677777777754 35544 566677777788999999999999987 467788888777
Q ss_pred HHHHH-hcCChhHHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHH
Q 004976 249 ISGFC-SNGSFDKGKKLFDDMLEK-GIS-PNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDV--VTYTCLIEGLC 323 (721)
Q Consensus 249 ~~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 323 (721)
...+. ..|+.+.....|+.+... |.. .....|...+..-...+++.....+++++++. |.. ..+..-...+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHH
Confidence 66554 467888888899988865 211 13446788888888888999999999999874 221 11111111111
Q ss_pred hcC------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004976 324 KGG------RATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGK 397 (721)
Q Consensus 324 ~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 397 (721)
+.. ..+++.++-...... ......+...+-.+ ..+...+ .| .+.
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~--~~v~~~~-~~--------------s~~ 246 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELE--IGVKDST-DP--------------SKS 246 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHH--HHHhhcc-Cc--------------cch
Confidence 111 111111111111100 00000000000000 0011100 00 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCH
Q 004976 398 VDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAER-------GISGNLVTFNILIGKYLTAGII 470 (721)
Q Consensus 398 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~ 470 (721)
.+++.....+... ..-.++..........-.++.-+.. -.+++..+|...+.-....|++
T Consensus 247 l~~~~~~l~~~~~-------------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 247 LTEEKTILKRIVS-------------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred hhHHHHHHHHHHH-------------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 1122111111111 0000111111122222222222221 0122345566666666677777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 471 DKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEI 550 (721)
Q Consensus 471 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 550 (721)
+.+.-++++..-. +..-...|...+.-....|+.+-|..++....+...+..+.+-..-.......|++..|..+++.+
T Consensus 314 ~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7777777776532 112344555555555566777777766666554432222222111122233467788888888777
Q ss_pred HHcCCCCCHH-HHHHHHHHHHcCCCHHHHH---HHHHHHHhCCCCCCh--hhHHHHHH-HHHhcCCHhHHHHHHHHHHHC
Q 004976 551 RNANCEPDVV-SFNTMINGTLKAGDLQSAR---ELYNNMLQMGLPPDA--LTYSTLIH-RFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 551 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~ 623 (721)
...- |+.. .-..-+....+.|+.+.+. +++.........+.. ..+...++ .+.-.++.+.|..++.++.+.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 7643 4433 2222334455666666666 333333321111111 11111111 123356777788888887775
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 004976 624 GHKPNACVYDSLLKGFSSQG 643 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g 643 (721)
.+++-..|..+++.....+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -CCccHHHHHHHHHHHHhCC
Confidence 4666667777777655554
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.0059 Score=50.84 Aligned_cols=91 Identities=8% Similarity=-0.115 Sum_probs=61.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004976 565 MINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGE 644 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 644 (721)
.+.-+...|++++|..+|.-+.-.+ +-+...|..|+.++-..+++++|+..|..+...+ ..|+..+...+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444556777777777777776654 4455566677777777777777777777766654 3455556667777777777
Q ss_pred hhHHHHHHHHHHH
Q 004976 645 TEEVFDLIHEMAD 657 (721)
Q Consensus 645 ~~~A~~~~~~~~~ 657 (721)
.+.|...|+..++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777775
No 198
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.53 E-value=0.00017 Score=43.25 Aligned_cols=32 Identities=47% Similarity=0.897 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004976 175 YNTIVNGLCKAKRFKEALDILPDMEAVGCCPN 206 (721)
Q Consensus 175 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 206 (721)
|+.++.+|++.|++++|.++|.+|...|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 199
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.53 E-value=0.0066 Score=56.54 Aligned_cols=229 Identities=16% Similarity=0.098 Sum_probs=101.9
Q ss_pred HHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCCCChhhHHHHHHHHHh
Q 004976 357 LCQKGLVGEAYEILNMMIEKG--MMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEK---YVQLDVVTYNNLIQGLCK 431 (721)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 431 (721)
+....+.++|+..|.+.+.+- ...-..++..+..+..+.|.+++++..--..+.... ........|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877766541 111122444555566666666665543222211000 000112334444444444
Q ss_pred cCChhHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhc
Q 004976 432 EDRLDEAVKIYHTMAER-GISG---NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHV-----PNSVTYSSMIDGFCKI 502 (721)
Q Consensus 432 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 502 (721)
..++.+++.+-..-... |..+ .......+..++...+.++++++.|+.+.+.... ....++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444444333221 1001 1122334555555556666666666665543211 1123455555566666
Q ss_pred CCHHHHHHHHHHHHHc----CCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHH
Q 004976 503 GMLNIAKGIFSKMRVS----GNDPTLF------DYNALMASLCKESSLEQAKRLFIEIRN----ANCEPDV-VSFNTMIN 567 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~ 567 (721)
.++++|.-+..++.+. ++. |.. +...+.-++...|..-.|.+.-++..+ .|-.+.. .....+++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 6666665555544331 111 111 112223344445555555555444433 2211111 12333445
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 004976 568 GTLKAGDLQSARELYNNML 586 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~ 586 (721)
.|...|+.+.|..-|+.+.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 5555566655555555443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.002 Score=59.93 Aligned_cols=88 Identities=13% Similarity=-0.054 Sum_probs=45.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHhcCC
Q 004976 78 VRSKNYEYAFSVYSKMTCVHIFPS---FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYAFNLILKGFCRKGE 152 (721)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 152 (721)
.+.|++++|+..|+.++... |.+ +.++..++.++...|++++|...|..+++..+. ..+.++..++..+...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 44556666666666665543 222 235555555555555555555555555543221 123444444555555555
Q ss_pred hhHHHHHHHHHHhC
Q 004976 153 VNKAIELFGEIKSN 166 (721)
Q Consensus 153 ~~~A~~~~~~~~~~ 166 (721)
++.|...|+++.+.
T Consensus 233 ~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 201
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0013 Score=62.58 Aligned_cols=99 Identities=11% Similarity=0.064 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 594 ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 594 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
..++.+++.+|.+.+++.+|++...+++..+ ++|...+..-+.+|...|+++.|+..|+++++ +.|++.....-+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456788889999999999999999999986 88899999999999999999999999999999 88987776665555
Q ss_pred HHhcCc-hhhH-hhHHHHHHhccC
Q 004976 674 LCNISE-DLDV-AKLFPTFSQETS 695 (721)
Q Consensus 674 ~~~~~~-~~~~-~~~~~~~~~~~~ 695 (721)
|....+ ..+. .+...+|.....
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 544333 2333 334445554444
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.1 Score=50.65 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhHC----CCCCCccchHHHHHHHH
Q 004976 211 STLMDGLCKDGRVDEAMGLLEEMKAK----GLDADVVVYSALISGFC 253 (721)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 253 (721)
+..+..++..|++.+++.+++++... ...-+..+|+.++-.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 34556677788888888777777653 23356667776555543
No 203
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.47 E-value=0.00027 Score=42.36 Aligned_cols=30 Identities=43% Similarity=0.969 Sum_probs=11.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004976 245 YSALISGFCSNGSFDKGKKLFDDMLEKGIS 274 (721)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 274 (721)
|+.++.+|++.|++++|.++|.+|.+.|+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333333333333333333333
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0048 Score=51.34 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
..+..+..+.-+...|++++|..+|+-....+ +.+..-|..++.++-..+++++|...|..+...+. .|+......+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHH
Confidence 34555677888888999999999998887765 56677788888888899999999999988876653 46667777888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004976 146 GFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~ 166 (721)
++...|+.+.|+..|+.+.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 889999999999999888874
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0033 Score=62.11 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=76.4
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 004976 135 VNIYAFNLILKGFCRKGEVNKAIELFGEIKSN--GVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYST 212 (721)
Q Consensus 135 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 212 (721)
.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..++++.++..-...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444455555555666666777766666544 1111223455777777777777777777777777777777777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhc
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSN 255 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (721)
++..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776655444555544444444433
No 206
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.38 E-value=0.00036 Score=41.48 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 175 YNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 175 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
|+.++.+|.+.|+++.|.++|++|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3334444444444444444444443333
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0011 Score=48.17 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=33.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 75 EALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 132 (721)
.++.+.+++++|++++++++..+ |.+...+...+.++.+.|++.+|...++.+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 44555666666666666666554 4455555556666666666666666666665544
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.13 Score=52.22 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 524 LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 524 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
..+...+...+.+...+.-|.++|.++-. ...++......+++.+|..+-++..+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33444444445555566666666655532 11344455666677777666665554
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.12 Score=50.35 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 628 NACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 628 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.-.+..++.+..-.|++++|.+.+++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334455677777778888888888888876
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.12 Score=46.75 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI--FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLI 143 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 143 (721)
+...++.-+....+.|+|++|.+.|+.+...++ +-...+...++.++.+.+++++|+...++.++.-+......|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 445555667777788888888888888887641 223445667777777888888888888887766444333334444
Q ss_pred HHHHH
Q 004976 144 LKGFC 148 (721)
Q Consensus 144 ~~~~~ 148 (721)
+.++.
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 44443
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.15 Score=46.13 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=29.8
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 392 IGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAER 448 (721)
Q Consensus 392 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 448 (721)
-.+.|++++|.+.|+.+..+.+..+....+...++.++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344455555555555555544443444445555555555555555555555555443
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.01 Score=53.86 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPD---ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS--GHKPNACVYDSL 635 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 635 (721)
.|+... .+.+.|++..|...|...++.. |.+ ...+.+|+.++...|++++|..+|..+.+. ..+--++.+..+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 344333 3556777888888888888863 322 356678888999999999999999888875 113346788888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 004976 636 LKGFSSQGETEEVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 636 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 665 (721)
+.+..+.|+.++|..+|++.++ -.|+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k--~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK--RYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH--HCCCCH
Confidence 8889999999999999999887 445443
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.16 Score=45.57 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004976 282 SLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMV 339 (721)
Q Consensus 282 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 339 (721)
.++.++.-.|.+.-....+.++++...+.++.....+++...+.|+.+.|...+++..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444444444555555555555554333344445555555555555555555555443
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0088 Score=57.15 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC---------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCV-----HIFPS---------FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVV 135 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 135 (721)
...-++.+++.|+|..|...|++++.. ..++. ..++..++-++.+.+++..|++..+.++..+ +.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 345578899999999999999998765 11111 1234566677777788888888888777775 44
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFK-EALDILPDMEA 200 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~ 200 (721)
|+.+...-..++...|+++.|+..|+++.+.. |.|-.+-+.++.+-.+...+. ...++|..|..
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777778888888888888777763 333344455555444443333 33556666644
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.016 Score=53.53 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=60.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--CcCHHhHHHHHHHHHhcCC
Q 004976 76 ALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR-GF--VVNIYAFNLILKGFCRKGE 152 (721)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~ 152 (721)
++.-+|++.+|-..+++.+... |.+.-++...=.++.-.|+...-...+++++-. +. |....+...+.-++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3444555556555566655543 455555555555555566655555555555422 11 1111222223334445566
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 153 VNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPD 197 (721)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 197 (721)
+++|++.-++..+.+ +.|.-+-..+...+...|++.++.++..+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666555553 33444444555555555556555555443
No 216
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.15 E-value=0.013 Score=58.11 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 004976 380 PDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNI 459 (721)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (721)
.+......++..+....+.+.+..++-+..........-..+...+++.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555666666666666666554333333344455667777777777777777776666677777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 460 LIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCK 501 (721)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 501 (721)
++..+.+.|++..|.++...|...+...+..++...+.++.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 777777777777777776666655444444444444444333
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=97.13 E-value=0.036 Score=54.64 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 004976 574 DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 574 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 653 (721)
+..+|.++.+++++.+ +.|+.....++.+....|+++.|...|+++...+ |....+|...+..+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455666666666654 5566666666666666677777777777777654 4455666666666777777777777777
Q ss_pred HHHHcCCCCCHHHHH--HHHHHHHhcCchhhHhhHHHHHHhcc
Q 004976 654 EMADKGVHLDQELTS--TILVCLCNISEDLDVAKLFPTFSQET 694 (721)
Q Consensus 654 ~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~~~ 694 (721)
++++ +.|-..... .+.--.+..++-.++.....+..+..
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 7666 555332221 22221233455566666655544433
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.13 E-value=0.0011 Score=48.86 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 595 LTYSTLIHRFLRFGLLSDAKSVYQKMVAS----GH-KPN-ACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+++.++.+|...|++++|++.|+++++. |. .|+ ..++..++.++...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666777777777777777766643 10 111 34566677777777777777777776654
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.012 Score=53.42 Aligned_cols=90 Identities=13% Similarity=-0.018 Sum_probs=41.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHhcCC
Q 004976 77 LVRSKNYEYAFSVYSKMTCVHI--FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYAFNLILKGFCRKGE 152 (721)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 152 (721)
+...|+|.+|...|...++..+ +-...+++.|+.++...|++++|...|..+.+.-+. ..++.+..++.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444555555555555554420 112233445555555555555555555555443221 123444444555555555
Q ss_pred hhHHHHHHHHHHhC
Q 004976 153 VNKAIELFGEIKSN 166 (721)
Q Consensus 153 ~~~A~~~~~~~~~~ 166 (721)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.017 Score=48.99 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 004976 596 TYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA-----DKGVHLDQELTS 668 (721)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 668 (721)
....++..+...|++++|.+.+++++... |-+...|..++.+|...|+..+|.++|+++. +.|+.|+..+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34566777888999999999999999875 7788899999999999999999999998875 348888776644
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.11 Score=50.38 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=104.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhhH
Q 004976 102 FLSLSGLIEVFVQTQKPKFALGVIGLILKRG---FVVNIYAFNLILKGFCR---KGEVNKAIELFGEIKSNGVSPDNCSY 175 (721)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 175 (721)
..+...++-+|....+++.-.++.+.+...- ....+.+-...+-++.+ .|+.++|+.++..++...-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3445555566777777877777777775431 12234455566666777 78888888888875555456777777
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-hh---HHHHHH---HH-HhHCC-
Q 004976 176 NTIVNGLCK---------AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGR-VD---EAMGLL---EE-MKAKG- 237 (721)
Q Consensus 176 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~-~~~~~- 237 (721)
..+++.|-. ....++|+..|.+.-... |+..+-..++..+.-.|. ++ +..++- .. +.+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 777776642 223678888888776653 454433333333333332 21 122222 11 22233
Q ss_pred --CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 238 --LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 238 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
...+-..+..++.+..-.|+.++|.+.++++.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2335666778888999999999999999999976
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=97.11 E-value=0.049 Score=53.70 Aligned_cols=117 Identities=9% Similarity=-0.072 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 004976 47 QYAEAVSLFQRAI---CSDRLPSGSVCNSLMEALVRS---------KNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ 114 (721)
Q Consensus 47 ~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (721)
....|+.+|++++ ..+|. -...|-.++.++... .+..+|.++-+++++.+ +.|..+...++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 4567777777777 44333 344444444333221 22334444555555544 4455555555555555
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 115 TQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 115 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.++++.|...|+++...++ ....++...+..+.-.|+.++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5555555555555554432 23344444444444455555555555554443
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.58 Score=49.45 Aligned_cols=186 Identities=20% Similarity=0.260 Sum_probs=104.5
Q ss_pred CCCCcchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 004976 27 SVPQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLS 106 (721)
Q Consensus 27 ~~~~~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 106 (721)
.+.+.++.+.|.-|+.+. .|+-|+.+=..- ..++.-...+....+.-+.+.|++++|...|=+.+.. +.| .
T Consensus 331 ~L~ek~le~kL~iL~kK~--ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 331 ELIEKDLETKLDILFKKN--LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eeeeccHHHHHHHHHHhh--hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 456667777777777644 666676543322 1111223345556677777788888888877777643 122 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004976 107 GLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAK 186 (721)
Q Consensus 107 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 186 (721)
.+++-+....+...-..+++...+.|.. +..--..++.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 2344445555666666666666666644 55556667777787777777666555443 2211 112334555666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 187 RFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
-.++|..+-.+... +......+ +-..+++++|++++..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66666655544332 22222222 23456777777776654
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.01 E-value=0.096 Score=45.41 Aligned_cols=189 Identities=14% Similarity=0.036 Sum_probs=95.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+..|-..|-+.-|+-=|.+++... |.-+..++-++--+...|+++.|.+.|+...+.++.-+-...|.-+ .+.--|++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~ 149 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRY 149 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCch
Confidence 334444455555555555555553 4455666777777777777777777777777665443322223222 33345677
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 154 NKAIELFGEIKSNGVSPDNCSYNTIV-NGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEE 232 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (721)
.-|.+-|.+.-+.+ +.|+ |.++- -.--..-++.+|..-+.+--.. .|..-|...+..+. .|... ...+++.
T Consensus 150 ~LAq~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~y-LgkiS-~e~l~~~ 221 (297)
T COG4785 150 KLAQDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFY-LGKIS-EETLMER 221 (297)
T ss_pred HhhHHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHH-Hhhcc-HHHHHHH
Confidence 77776666666553 2222 22211 1112234455555443332221 23333333332221 12221 1223333
Q ss_pred HhHCCCC------CCccchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 233 MKAKGLD------ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG 272 (721)
Q Consensus 233 ~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 272 (721)
+....-. .=.++|..|+..+...|+.++|..+|+-.+..+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3322110 013567778888888888888888888877653
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.99 E-value=0.023 Score=46.30 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI--FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV 134 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 134 (721)
+...+..-+....+.|+|.+|++.|+.+..... +-...+...++.++.+.+++++|...+++.++..|.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 444555556666777777777777777766631 122334566677777777777777777777766544
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.0018 Score=47.73 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCC---CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM--GLP---PD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
+++.++..|...|++++|+.+|+++++. ... |+ ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555666666666666666655532 011 11 24555666666666666666666666553
No 227
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.96 E-value=0.013 Score=44.82 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 143 ILKGFCRKGEVNKAIELFGEIKSNGV-SPDNCSYNTIVNGLCKAK--------RFKEALDILPDMEAVGCCPNLITYSTL 213 (721)
Q Consensus 143 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 213 (721)
.+..+...+++...-.+|+.+++.|+ -|+..+|+.++....+.. +.-+.+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 677777777776554321 233556677777777777777777777
Q ss_pred HHHHHh
Q 004976 214 MDGLCK 219 (721)
Q Consensus 214 ~~~~~~ 219 (721)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766653
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.071 Score=45.14 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=68.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC--C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCV--H-IFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRK 150 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (721)
+......++...+...+++++.. | +-++... ..........+... -..+...++..+...
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL-------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 44445667888888888888765 1 1111000 11222222222222 123455667777788
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhH
Q 004976 151 GEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEA-----VGCCPNLITY 210 (721)
Q Consensus 151 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 210 (721)
|+++.|..+.+.+.... |.+...|..++.+|...|+..+|++.|+++.. .|+.|+..+-
T Consensus 76 ~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 76 GDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp T-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 88888888888888775 55777888888888888888888888877643 3666766543
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.93 E-value=0.15 Score=48.04 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=126.7
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC---CHhhHHHHHHHHHh
Q 004976 147 FCRKGEVNKAIELFGEIKSNG--VSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG--CCP---NLITYSTLMDGLCK 219 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p---~~~~~~~l~~~~~~ 219 (721)
+....+.++|+..+.+.+.+- ...--.++..+..+..+.|.+++++..--.....- ... --..|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777666655431 00112245556666677777776654432221110 000 11244555555555
Q ss_pred cCChhHHHHHHHHHhHC-CCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CcchHHHHHHHHHhc
Q 004976 220 DGRVDEAMGLLEEMKAK-GLDA---DVVVYSALISGFCSNGSFDKGKKLFDDMLEKGI---SP--NVVTYNSLMHCLCKI 290 (721)
Q Consensus 220 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~ 290 (721)
.-++.+++.+-..-... |..+ .......+..++...+.++++++.|+.+.+-.. .| ....+..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666555544332 1111 112334466677777788888888887764311 11 233577788888888
Q ss_pred CCHHHHHHHHHHHHHC--CCC-CCh------hhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHH
Q 004976 291 GQWKEAIAMLDAMMER--GIR-PDV------VTYTCLIEGLCKGGRATKAIDLLNWMVK----KGEK-LSVITYNVLIKG 356 (721)
Q Consensus 291 g~~~~A~~~~~~~~~~--~~~-~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~ 356 (721)
.|+++|.-+..+..+. .+. .|. .....+.-++-..|+...|.+..++..+ .|.. ........++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888887766555431 111 121 1233444556667777777776666544 3332 234455667888
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 004976 357 LCQKGLVGEAYEILNMMIE 375 (721)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~ 375 (721)
|...|+.+.|+.-|+++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8888998888888877653
No 230
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.92 E-value=0.0015 Score=37.72 Aligned_cols=25 Identities=40% Similarity=0.980 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 175 YNTIVNGLCKAKRFKEALDILPDME 199 (721)
Q Consensus 175 ~~~l~~~~~~~g~~~~a~~~~~~~~ 199 (721)
|+.++++|.+.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3334444444444444444444433
No 231
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.88 E-value=0.011 Score=45.28 Aligned_cols=72 Identities=18% Similarity=0.421 Sum_probs=35.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004976 252 FCSNGSFDKGKKLFDDMLEKGI-SPNVVTYNSLMHCLCKIG--------QWKEAIAMLDAMMERGIRPDVVTYTCLIEGL 322 (721)
Q Consensus 252 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (721)
+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333455555555555555444 445555554444443321 2233455555555555555555555555544
Q ss_pred H
Q 004976 323 C 323 (721)
Q Consensus 323 ~ 323 (721)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
No 232
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.87 E-value=0.0015 Score=37.63 Aligned_cols=28 Identities=39% Similarity=0.912 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 209 TYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.17 Score=46.52 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=68.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+......|++.+|...|..+.... +.+......++.++...|+.+.|..++..+-.............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344455566666666666665553 3444555556666666666666666665542211111111111223344444444
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC
Q 004976 154 NKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC-CPNLITYSTLMDGLCKDG 221 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~ 221 (721)
.+...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+...+. ..|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444444432 33444445555555566666666555555443311 123333444444444444
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.85 E-value=0.029 Score=55.11 Aligned_cols=67 Identities=9% Similarity=-0.013 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 64 LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF---LSLSGLIEVFVQTQKPKFALGVIGLILKR 131 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 131 (721)
+.....|+.++.+|.+.|++++|+..|++++..+ |.+. .+|+.++.+|..+|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3477899999999999999999999999999876 4444 35999999999999999999999999875
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.87 Score=48.22 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYN----TIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGL 217 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 217 (721)
.-+..+.+...++.|+.+.+.-- .+..... ..+.-+.+.|++++|...|-+-... +.| ..++.-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 34455556666666665544322 1222222 2233344667777777666555432 122 1234444
Q ss_pred HhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004976 218 CKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAI 297 (721)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 297 (721)
....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 5555556666666666666665 55555667777777777666555444332 1100 112334445555555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004976 298 AMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWM 338 (721)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 338 (721)
-+-.+... .... +-..+...+++++|++++..+
T Consensus 484 ~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 44433322 1111 122233456667776666544
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.83 E-value=0.025 Score=44.31 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=49.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHhc
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNI---YAFNLILKGFCRK 150 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 150 (721)
+.++...|+.+.|++.|.+++.. .|.....|+..++++.-+|+.++|++-++++++...+... .+|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554 2445555555555555555555555555555543222222 1233334455556
Q ss_pred CChhHHHHHHHHHHhCC
Q 004976 151 GEVNKAIELFGEIKSNG 167 (721)
Q Consensus 151 g~~~~A~~~~~~~~~~~ 167 (721)
|+-+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666666666555
No 237
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.61 Score=46.28 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=68.3
Q ss_pred CCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCCHhHHHHHHHHHHHC-CCCCCHHH
Q 004976 556 EPDVVSF-NTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRF--LRFGLLSDAKSVYQKMVAS-GHKPNACV 631 (721)
Q Consensus 556 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 631 (721)
.|+..++ +.+..-+.+.|-+.+|...+..+.... +|....|..++..- ...-+...++++|+.|... | .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3555443 445566667777888888888887753 45556666655432 1223377788888888765 4 67777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 632 YDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
|......-...|..+.+-.++-++.+. +.|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt-l~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT-LQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh-hChh
Confidence 877777777788888888877777653 4443
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.78 E-value=0.095 Score=54.00 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHhCC--C-CCChhhHHHHHHHHHhcCCHhHHH
Q 004976 539 SLEQAKRLFIEIRNANCEPDVVSFN-TMINGTLKAGDLQSARELYNNMLQMG--L-PPDALTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 539 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~ 614 (721)
+.+.|.++++.+.+.- |+...|. .-++.+...|+.++|++.|+++.... . ......+..+++++...++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4455555555555432 3333322 22344445555555555555443210 0 011233444555555555555555
Q ss_pred HHHHHHHHC
Q 004976 615 SVYQKMVAS 623 (721)
Q Consensus 615 ~~~~~~~~~ 623 (721)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.75 E-value=0.0082 Score=58.82 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 004976 557 PDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA----LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVY 632 (721)
Q Consensus 557 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (721)
.+...++.++.+|...|++++|+..|+++++. .|+. .+|.+++.+|...|+.++|++.++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 45678999999999999999999999999994 5664 358999999999999999999999999852 22 22
Q ss_pred HHHHH--HHHcCCChhHHHHHHHHHHHcCC
Q 004976 633 DSLLK--GFSSQGETEEVFDLIHEMADKGV 660 (721)
Q Consensus 633 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 660 (721)
..+.. .+....+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 12233455677778888877665
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.059 Score=42.35 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=62.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHH
Q 004976 36 QLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFL---SLSGLIEVF 112 (721)
Q Consensus 36 ~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~ 112 (721)
-+.++-....|+++.|++.|.+++..-|+ +.++||.-+.++.-+|+.++|+.=++++++...+.... ++...+..|
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34445555567777777777777776555 66777777777777777777777777777663333333 234445556
Q ss_pred HhcCChhHHHHHHHHHHHCC
Q 004976 113 VQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 113 ~~~~~~~~A~~~~~~~~~~~ 132 (721)
...|+-+.|+.-|+.+.+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 67777777777777776655
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.16 Score=44.97 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 004976 461 IGKYLTAGIIDKALEMWKHLL 481 (721)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~ 481 (721)
..+|...+++++|...+.++.
T Consensus 38 AvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHH
Confidence 344445555555555555544
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.29 Score=45.16 Aligned_cols=143 Identities=14% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
.....|++.+|..+|+...... +.+...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3444455555555555544442 222334444444555555555555555444332100111111112222333333332
Q ss_pred HHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcC
Q 004976 226 AMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGI-SPNVVTYNSLMHCLCKIG 291 (721)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 291 (721)
...+-..+-. ++. |...-..+...+...|+.+.|.+.+-.+++++. .-|...-..++..+.-.|
T Consensus 222 ~~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222222 111 444445555555555555555555544443311 112333444444444444
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.56 E-value=0.67 Score=43.22 Aligned_cols=226 Identities=19% Similarity=0.166 Sum_probs=141.2
Q ss_pred CChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004976 433 DRLDEAVKIYHTMAERGIS-GNLVTFNILIGKYLTAGIIDKALEMWKHLLEL-GHVPNSVTYSSMIDGFCKIGMLNIAKG 510 (721)
Q Consensus 433 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (721)
+....+...+......... ............+...+.+..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444454444443211 12455556666666777777777777666642 123345556666666667777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 511 IFSKMRVSGNDPTLFDYNALMA-SLCKESSLEQAKRLFIEIRNANC--EPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
.+.........+ ......... .+...|+++.|...+.++..... ......+......+...++.+.|...+.++..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777777653332 122222223 67778888888888888755221 01223344444446677888888888888887
Q ss_pred CCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 588 MGLPP-DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 588 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
.. +. ....+..+...+...++++.|...+..+.... +.....+..+...+...|..+++...+.+..+ ..|.
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 53 33 35677778888888888888888888888752 22355566666666677778888888888887 4444
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.55 E-value=0.0062 Score=38.60 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLI 109 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 109 (721)
.+|..++..+.+.|++++|+++|+++++.+ |.+...+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 457778888888888888888888888875 66666666654
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.3 Score=46.36 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS---FDKGKKLFDDMLEKGISPNVVTYNSLMHCLCK 289 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (721)
++..+...+.|..|+++-..+...-.. ...+|.....-+.+..+ -+-+..+-+++... . -....|..+++-...
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHh
Confidence 445555666677777666555432111 13455555555555432 11122222222111 1 233456666666666
Q ss_pred cCCHHHHHHHHH
Q 004976 290 IGQWKEAIAMLD 301 (721)
Q Consensus 290 ~g~~~~A~~~~~ 301 (721)
.|+++-|..+++
T Consensus 520 ~GR~~LA~kLle 531 (829)
T KOG2280|consen 520 EGRFELARKLLE 531 (829)
T ss_pred cCcHHHHHHHHh
Confidence 777777766664
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.53 E-value=0.48 Score=41.30 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=117.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 109 IEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 109 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 188 (721)
+..|-..|-.+.|+--|.+.+...| .-+.++|.+.-.+...|+++.|...|+...+.+...+-...|--+ ++.-.|++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~ 149 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRY 149 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCch
Confidence 3445566778888888888887753 467899999999999999999999999999875222222223222 34456899
Q ss_pred HHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHH-HHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHH
Q 004976 189 KEALDILPDMEAVGCCPNL--ITYSTLMDGLCKDGRVDEAMGL-LEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLF 265 (721)
Q Consensus 189 ~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 265 (721)
.-|.+-|.+.-+.+ +.|+ ..|..+.. ..-++.+|..- .++..+. |...|...+..|.- |.+. ...++
T Consensus 150 ~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~ 219 (297)
T COG4785 150 KLAQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLM 219 (297)
T ss_pred HhhHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHH
Confidence 99988888776653 2222 23332222 23466666644 4444443 44445444433322 2221 12344
Q ss_pred HHHHhCCCCCC-------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004976 266 DDMLEKGISPN-------VVTYNSLMHCLCKIGQWKEAIAMLDAMMERG 307 (721)
Q Consensus 266 ~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 307 (721)
+++.... ..+ ..+|..+++.+...|+.++|..+|+-.+..+
T Consensus 220 ~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4444321 111 3578899999999999999999999888753
No 247
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.53 E-value=0.058 Score=47.16 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=37.4
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CChhHHHHH
Q 004976 171 DNCSYNTIVNGLCK-----AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKD----------------GRVDEAMGL 229 (721)
Q Consensus 171 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~A~~~ 229 (721)
+..+|..++..|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 234444444445555555555555555555444221 122334445
Q ss_pred HHHHhHCCCCCCccchHHHHHHH
Q 004976 230 LEEMKAKGLDADVVVYSALISGF 252 (721)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~ 252 (721)
+++|...|+-||.+++..+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHh
Confidence 55555555555555555555544
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=1.3 Score=45.89 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCHHHHH
Q 004976 468 GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN---DPTLFDYNALMASLCKESSLEQAK 544 (721)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 544 (721)
.+.+.|.++++.+.+.-|. .......-++.+...|+.++|++.|+.+..... ......+..++.++.-+.++++|.
T Consensus 247 ~~~~~a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3455666666666654322 222333334455566666666666665443110 111223445555666666777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHHcCCCH-------HHHHHHHHHHHh
Q 004976 545 RLFIEIRNANCEPDVVSFNTMI-NGTLKAGDL-------QSARELYNNMLQ 587 (721)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 587 (721)
..|..+.+.+ .-+...|..+. .++...|+. ++|.+++.++..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7776666633 11222333322 233455555 666666665544
No 249
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.24 Score=50.41 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004976 297 IAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW 337 (721)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 337 (721)
+.-++++.++|-.|+.. .++..++-.|++.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 33455666666555543 234445556666666666654
No 250
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.44 E-value=1.8 Score=46.85 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCC-CC--CCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHh-----hHHHHHHHHHhcCChh
Q 004976 49 AEAVSLFQRAICSD-RL--PSGSVCNSLMEALV-RSKNYEYAFSVYSKMTCVHIFPSFL-----SLSGLIEVFVQTQKPK 119 (721)
Q Consensus 49 ~~A~~~~~~~~~~~-~~--~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 119 (721)
.-|++.++-+.... .. ....++..++.++. ...++++|+..+++.....-.++.. .-..+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566677666322 11 22345566777776 5678888888888776542222111 1234456666655555
Q ss_pred HHHHHHHHHHHCCCC----cCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHH--HhcCCHH
Q 004976 120 FALGVIGLILKRGFV----VNIYAFNLI-LKGFCRKGEVNKAIELFGEIKSNG---VSPDNCSYNTIVNGL--CKAKRFK 189 (721)
Q Consensus 120 ~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~ 189 (721)
|...++..++.--. +-...+..+ +..+...+++..|...++.+...- ..|...++-.++.+. ...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777776543111 112223332 222223367887887777765431 123333333344332 3455566
Q ss_pred HHHHHHHHHHhCC---------CCCCHhhHHHHHHHH--HhcCChhHHHHHHHHH
Q 004976 190 EALDILPDMEAVG---------CCPNLITYSTLMDGL--CKDGRVDEAMGLLEEM 233 (721)
Q Consensus 190 ~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~ 233 (721)
++.+.++++.... ..|...+|..++..+ ...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666553211 123444566665543 3556666665555544
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.39 E-value=0.84 Score=42.51 Aligned_cols=187 Identities=17% Similarity=0.102 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCChhHHHH
Q 004976 81 KNYEYAFSVYSKMTCVHIFP-SFLSLSGLIEVFVQTQKPKFALGVIGLILKR-GFVVNIYAFNLILKGFCRKGEVNKAIE 158 (721)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 158 (721)
+.+..+...+.......... ...........+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555555432110 2344455555555666666666655555431 123334445555555555555666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 159 LFGEIKSNGVSPDNCSYNTIVN-GLCKAKRFKEALDILPDMEAVGCCP----NLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
.+.........+ ......... ++...|+++.+...+.+.... .| ....+......+...++++.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 666555542111 111222222 455556666666666555332 12 1112222222334445555555555555
Q ss_pred hHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 234 KAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
...........+..+...+...++++.|...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 5432111233344444444444555555555555444
No 252
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.33 E-value=0.098 Score=45.82 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=62.1
Q ss_pred CHHhHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------------cCCHHHHHHH
Q 004976 136 NIYAFNLILKGFC-----RKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK----------------AKRFKEALDI 194 (721)
Q Consensus 136 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~ 194 (721)
+...|..++..|. +.|.++=....+..|.+-|+..|..+|+.|+.++=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 4445555555554 346666666677777777777777777777776532 1234678999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 004976 195 LPDMEAVGCCPNLITYSTLMDGLCKDG 221 (721)
Q Consensus 195 ~~~~~~~~~~p~~~~~~~l~~~~~~~~ 221 (721)
+++|...|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 999999999999999999999985544
No 253
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.74 Score=40.77 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcC-CCHHHHHHHHHHHHhC--CCCCC---h
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPDV-----VSFNTMINGTLKA-GDLQSARELYNNMLQM--GLPPD---A 594 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~---~ 594 (721)
+|.....+|. .+++.+|...++..++.-..... .....++..|... .+++.|+..|+.+-+- |-..+ .
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444444443 34777777777666652100000 1112344444332 5566666666655543 10000 0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 595 LTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
..+...+..-...|++.+|+++|++....
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222233455666666666665544
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.19 Score=46.73 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=92.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCCH
Q 004976 465 LTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYN----ALMASLCKESSL 540 (721)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 540 (721)
...|++.+|-..|+++++.-|. |...+...-.++...|+.+.-...+++++.. ..++...|. .+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467777777777777765433 6666666666777777777777777776644 133333222 233445567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 004976 541 EQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQM---GLPPDALTYSTLIHRFLRFGLLSDAKSVY 617 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (721)
++|++.-++..+.+ +.|..........+...|+.+++.++..+-... +--.-...|...+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777777654 335555566666666777777777766554332 00011233445555566667777777777
Q ss_pred HHHH
Q 004976 618 QKMV 621 (721)
Q Consensus 618 ~~~~ 621 (721)
..-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.25 E-value=2.1 Score=45.57 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcC--
Q 004976 48 YAEAVSLFQRAICSDRLPSGSVCNSLMEALV-----RSKNYEYAFSVYSKMTCV----HIFPSFLSLSGLIEVFVQTQ-- 116 (721)
Q Consensus 48 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~-- 116 (721)
...|..+|+.+...+ +...-..++.++. ..+|.+.|+.+|..+... -......+...++.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 578999999888765 3444444444433 457999999999999771 11113445667777776643
Q ss_pred ---ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hcC
Q 004976 117 ---KPKFALGVIGLILKRGFVVNIYAFNLILKGFCRK---GEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC----KAK 186 (721)
Q Consensus 117 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 186 (721)
+...|..++..+...|.+ + ....++..+..- .+...|.++|..+.+.| ...++-.+..+|. -..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-D--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVER 378 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-h--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCC
Confidence 556688888887766532 2 333333333322 35677888888888776 3334333443333 234
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCC
Q 004976 187 RFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKG 237 (721)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 237 (721)
+...|..++.+....| .|....-...+..+.. ++++.+.-.+..+.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 5677777777777765 2222211222222323 66666666555555544
No 256
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.23 E-value=1.3 Score=42.96 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFL 605 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (721)
+.+..+.-+...|....|.++-.+.. -|+...|...+.+++..+++++-..+... .-.+..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555666777888888877765553 37888899999999999999887765432 223577888889999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 606 RFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
..|+..+|..+..++ ++ ..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888873 22 33456778999999998776554
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.22 E-value=0.014 Score=36.94 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
..++.+|...|++++|++.|+++++.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.1 Score=44.60 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=76.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 566 INGTLKAGDLQSARELYNNMLQMGLPPD-----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
++-+...|++++|..-|..++.. +++. ...|..-+.++.+.+.++.|+.-..++++.+ +.....+..-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 34567788888888888888885 2332 2455666778888999999999999998875 444555666677888
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
+..++++|+.-|+++++ ..|.....+..+.
T Consensus 180 k~ek~eealeDyKki~E--~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSRREAREAIA 209 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 88999999999999988 6776665554443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.19 E-value=0.42 Score=47.52 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQMGLPP--DALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
.++.++.+.|+.++|++.+.++.+.. ++ +......|+.++...+.+.++..++.+.-+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455556666666666666665432 22 123445566666666666666666666543
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.37 Score=40.35 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 147 FCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
+...|.+++.....+.+...+-+--...-..|.-+-.+.|++..|.++|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334455555554444444332222222233344444455555555555555443
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.91 Score=40.53 Aligned_cols=207 Identities=13% Similarity=0.125 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004976 421 TYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFC 500 (721)
Q Consensus 421 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 500 (721)
.|.....+|....+++.|...+.++.+.. . +-..+..- .+.++.|.-+.+++.+. ..-...+......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-E-nnrslfhA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-E-NNRSLFHA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-H-hcccHHHH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 44445556667777777777766665321 1 22222222 22345555555555543 112334555556677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHcCCCH
Q 004976 501 KIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA--NCEPDV---VSFNTMINGTLKAGDL 575 (721)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~g~~ 575 (721)
.+|.++.|-..+++.-+. .+..++++|+.+|++.... .-..+. ..+....+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666655432 2234455556655554431 001111 2334445566666777
Q ss_pred HHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCChhH
Q 004976 576 QSARELYNNMLQM----GLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGH---KPNACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 576 ~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 647 (721)
++|-..+.+-... .--++. ..+...+-.+....++..|.+.++.....+- +.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 7766655543321 011222 3345555566677789999999988665421 33455666666655 4578887
Q ss_pred HHHHHHH
Q 004976 648 VFDLIHE 654 (721)
Q Consensus 648 A~~~~~~ 654 (721)
+.+++..
T Consensus 246 ~~kvl~s 252 (308)
T KOG1585|consen 246 IKKVLSS 252 (308)
T ss_pred HHHHHcC
Confidence 7766543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.12 E-value=0.33 Score=48.22 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=84.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004976 501 KIGMLNIAKGIFSKMRVSGNDPTL-FDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAR 579 (721)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 579 (721)
+..+...-++.-.++++. .|+- ..|..|+ -.......+|.++|++.++.+- . .+..- ......|.
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE--~--~lg~s-~~~~~~g~----- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE--A--SLGKS-QFLQHHGH----- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH--H--hhchh-hhhhcccc-----
Confidence 344444445555555544 3332 2222222 2235567888888888877431 0 00000 00011111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 004976 580 ELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG-HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADK 658 (721)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 658 (721)
.++........+-..+-..++.++.+.|+.++|++.++++++.. ......+...|+.++...+.+.++..++.+.-+.
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11222222222333444678888899999999999999998752 1224557889999999999999999999998653
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.05 E-value=0.0072 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004976 55 FQRAICSDRLPSGSVCNSLMEALVRSKNYEYAF 87 (721)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 87 (721)
|+++++.+|. +..+|+.++.++...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6777777765 8888888888888888888886
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.73 E-value=2 Score=41.05 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcC-ChhHHHHHHHHHHhC----C----CCCCH-----
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSG-------SVCNSLMEALVRSK-NYEYAFSVYSKMTCV----H----IFPSF----- 102 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~----~----~~~~~----- 102 (721)
..|+++.|...|.++.......++ ..++.++......+ +++.|..+++++... + ..++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 367889999999988653311122 34556677777788 888888888887654 1 01111
Q ss_pred hhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 103 LSLSGLIEVFVQTQKPKF---ALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.++..++.++...+..+. |..+++.+... .+..+.++..-+..+.+.++.+.+..++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 224455555555554443 23333333222 2333444444445555555566666666666554
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.52 E-value=4.2 Score=43.33 Aligned_cols=143 Identities=16% Similarity=0.090 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhHCCCCCCccchHHHHHHHH-----hcCChhHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhc
Q 004976 223 VDEAMGLLEEMKAKGLDADVVVYSALISGFC-----SNGSFDKGKKLFDDMLE-------KGISPNVVTYNSLMHCLCKI 290 (721)
Q Consensus 223 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 290 (721)
...|..+++...+.| +......++.+|. ...|.+.|..+|+.+.+ .+ .......++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777776654 4444444444443 33577777777777765 33 333555666666653
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 004976 291 G-----QWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG---GRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ--- 359 (721)
Q Consensus 291 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 359 (721)
. +.+.|..++.+..+.| ++.....++..+... .+...|.++|....+.|.. ..+..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 4566777777766654 223333344433332 2456777777777766532 233333333322
Q ss_pred -cCCHhHHHHHHHHHHHCC
Q 004976 360 -KGLVGEAYEILNMMIEKG 377 (721)
Q Consensus 360 -~~~~~~a~~~~~~~~~~~ 377 (721)
..+...|..++.+.-+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 235666666666666665
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.48 E-value=0.4 Score=48.70 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=26.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 206 NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
+...|..|+....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544332 33444445555555444444444443
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.48 E-value=2.5 Score=40.41 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 456 TFNILIGKYLTAGIID---KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 456 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
++..++.+|...+..+ +|..+++.+....+. .+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655443 444555555443322 2444444455555567777777777777665
No 268
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=4.3 Score=42.81 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=63.0
Q ss_pred hCCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHhHCC
Q 004976 165 SNGVSPDNCSYNT-----IVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRV--DEAMGLLEEMKAKG 237 (721)
Q Consensus 165 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~ 237 (721)
..|++.+..-|.. ++.-+...+.+..|+++-..+...-.. +...|......+++..+. +++.+..++=+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555544 455566778899999988776542111 155677777777766432 23333333222221
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 004976 238 LDADVVVYSALISGFCSNGSFDKGKKLFDD 267 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (721)
. .....|..++.-....|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3566788888888899999999988764
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.37 E-value=1.1 Score=35.71 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=77.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004976 500 CKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAR 579 (721)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 579 (721)
.-.|..++..++..+...+. +..-+|.++--....-+-+-..++++.+-+. -|. ...|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34567777777777766542 3333333332222233333333333333221 111 2344555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 004976 580 ELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKG 659 (721)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 659 (721)
..+-.+ ..+......-+..+...|+-+.-.+++..+...+ .++++.+..++.+|.+.|+..++-++++++.+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444322 2334555566677888999999889998887643 7899999999999999999999999999999887
Q ss_pred CC
Q 004976 660 VH 661 (721)
Q Consensus 660 ~~ 661 (721)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.29 E-value=0.043 Score=32.28 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 630 CVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
.+|..++.++...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566666666666666666666666666 4554
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.24 E-value=0.26 Score=42.25 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 71 NSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF-----LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
-.=++-++..|+|++|..-|..++..- |+.+ ..|...+.++.+.+.++.|+.-...+++.++. ...+...-+.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHH
Confidence 344677889999999999999998873 3322 23556677888999999999999999887643 4555666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 004976 146 GFCRKGEVNKAIELFGEIKSNG 167 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~ 167 (721)
+|.+...+++|+.-|.++.+..
T Consensus 177 ayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhC
Confidence 8888899999999999998873
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.20 E-value=0.8 Score=37.54 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 389 LMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAER 448 (721)
Q Consensus 389 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 448 (721)
+....+.|++++|.+.|+.+...-|..+-...+...++.+|.+.+++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333444455555555555555443333333444455555555555555555555555554
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.18 E-value=0.033 Score=32.75 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 630 CVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
..|..++.++...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3556666666777777777777776666 4443
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.58 Score=46.14 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=25.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 004976 254 SNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWK 294 (721)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 294 (721)
..+.++...+++..+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 45667777777777776665555555666666666666543
No 275
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.06 E-value=6.3 Score=42.73 Aligned_cols=60 Identities=10% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC--CHHHHHH-----HHHHHHcCCChhHHHHHHHHHHH
Q 004976 597 YSTLIHRFLRFGLLSDAKSVYQKMVASGH-KP--NACVYDS-----LLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
++.+...+. .|+..+............. .+ ....|.. +...+...|+.++|.....+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344444444 5666665554444332211 11 2334532 33336667888888877776543
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.04 E-value=0.12 Score=48.06 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChh
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETE 646 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 646 (721)
+-|.++|.+++|+.+|.+.+... +.++.++..-+.+|.+...+..|..-+..++..+ ..=...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34555555555555555555421 2244555555555555555555555555544432 111223333333334445555
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 004976 647 EVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~ 665 (721)
+|.+-++..++ ++|...
T Consensus 183 EAKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHHhHHHHHh--hCcccH
Confidence 55555555555 455433
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.99 E-value=1.5 Score=35.05 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=78.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 464 YLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQA 543 (721)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 543 (721)
..-.|..++..++..+..... +..-++.++--....-+-+...++++.+-+. -|. ..+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHH
Confidence 345677888888888777642 4444444443334444444455555544332 122 234444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 544 KRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
...+-.. + .+.......+......|+-+.-.+++..+.+.+ .+++.....++.+|.+.|+..++.+++.++.+.
T Consensus 76 i~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4444222 1 244455566677778888888888888887543 677888888888999999999999999998888
Q ss_pred CC
Q 004976 624 GH 625 (721)
Q Consensus 624 ~~ 625 (721)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 74
No 278
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.95 E-value=0.19 Score=42.59 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 645 TEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
+++|...|+++.+ ..|++..|+.-+..
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3444444444444 45555555544443
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.94 E-value=0.03 Score=32.91 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 004976 617 YQKMVASGHKPNACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
|+++++.. |.++..|..++.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555543 555666666666666666666654
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=13 Score=45.26 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=88.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIF-PSFLSLSGLIE-VFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
.++.+-.+.+.|..|+..+++......+ .....+..+++ .|...++++....+...-. . ++..+.. +-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a--~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF---A--DPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---c--CccHHHH-HHHHHh
Confidence 4566777788888888888874211111 12233444554 7888888888777776421 1 2222232 334556
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHhcCChhHHHH
Q 004976 150 KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLM-DGLCKDGRVDEAMG 228 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~A~~ 228 (721)
.|++..|...|+++.+.+ ++....++.++......|.++..+-..+-.... ..+....++.+. .+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888888774 444666776666666667777666655544332 122333333332 34456677776655
Q ss_pred HHH
Q 004976 229 LLE 231 (721)
Q Consensus 229 ~~~ 231 (721)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.83 E-value=0.59 Score=47.52 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 105 LSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK 184 (721)
Q Consensus 105 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (721)
...++..+.+.|-.+.|+++.. |+..- .....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4455555555555555555421 22111 12234555555555443321 244456666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHH
Q 004976 185 AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKL 264 (721)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 264 (721)
+|+++-|.+.|.+... +..++-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666665554332 3444444555555555555554444432 133334444445555555554
Q ss_pred HHH
Q 004976 265 FDD 267 (721)
Q Consensus 265 ~~~ 267 (721)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 282
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.72 E-value=3.5 Score=38.08 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-----cCCCCCHHHH
Q 004976 597 YSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD-----KGVHLDQELT 667 (721)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 667 (721)
+......|...|.+.+|.++.++++..+ +.+...+..+...+...|+--.|.+.++++.+ .|+..|..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3455677889999999999999999875 77888899999999999999999988888753 3666555443
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.67 E-value=2.3 Score=35.83 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHhc
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIY-AFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIV-----NGLCKA 185 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 185 (721)
+.+.+..++|+.-|..+-+.|...-+. +...........|+...|+..|+++-.....|.. ..-+. ..+...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--GRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--hhHHHHHHHHHHHhcc
Confidence 457788888988888888777664443 4455566778889999999999988775333332 22222 235578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 186 KRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 186 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
|.+++.....+.+...+.+--...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 899988888887766553334445567777778899999999999988764
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.64 E-value=0.075 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMT 94 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 94 (721)
+|..|+.++.+.|++++|+.+|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888855
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.51 E-value=0.25 Score=46.14 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
.-.-++-|+++|.|++|+.+|.+.+... |.++..+...+.+|.+..++..|..-...++..+ ..-..+|..-+.+-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 3456788999999999999999998875 6688888999999999999999988888887653 2234556666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCC
Q 004976 150 KGEVNKAIELFGEIKSNGVSPD 171 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~ 171 (721)
.|...+|.+-++.++.. .|+
T Consensus 178 Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHhh--Ccc
Confidence 67777777777777765 455
No 286
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.49 E-value=0.83 Score=37.03 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCc
Q 004976 624 GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD-KGVHLDQELTSTILVCLCNISE 679 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~ 679 (721)
...|+..++.+++.+|...|++..|.++++...+ .+++.+...|..|+........
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 3568888999999999999999999999988774 4777788889988888665444
No 287
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.41 E-value=9.1 Score=41.54 Aligned_cols=228 Identities=16% Similarity=0.062 Sum_probs=121.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChh-------hHHHH-HHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHH
Q 004976 427 QGLCKEDRLDEAVKIYHTMAERGISGNLV-------TFNIL-IGKYLTAGIIDKALEMWKHLLELGH----VPNSVTYSS 494 (721)
Q Consensus 427 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~ 494 (721)
.......++++|..++.++...-..|+.. .+..+ .......|+++.|.++.+.....-+ .+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456778889988888876532222211 22222 1233457888999988888776522 223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHH--HHHHHhcC--CHHHHHHHHHHHHHcC--CCC----CHHH
Q 004976 495 MIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFD---YNAL--MASLCKES--SLEQAKRLFIEIRNAN--CEP----DVVS 561 (721)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~--~~~----~~~~ 561 (721)
++.+..-.|++++|..+.++..+..-.-+... |..+ ...+..+| .+.+....|....... -.| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 66777788999999988877665422223222 2222 23345567 2333344444433211 111 1223
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC----CHHHHHH
Q 004976 562 FNTMINGTLK-AGDLQSARELYNNMLQMGLPPDALTY--STLIHRFLRFGLLSDAKSVYQKMVASGHKP----NACVYDS 634 (721)
Q Consensus 562 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 634 (721)
...+.+++.+ .+...+|..-++--......|-.... ..|+.+....|+.++|...+.++......+ +...-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444455544 12222233223222222111212222 367788889999999999988887652222 2222222
Q ss_pred HHHH--HHcCCChhHHHHHHHH
Q 004976 635 LLKG--FSSQGETEEVFDLIHE 654 (721)
Q Consensus 635 l~~~--~~~~g~~~~A~~~~~~ 654 (721)
.+.+ -...|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 3456888888877766
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=8.3 Score=40.71 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=58.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 533 SLCKESSLEQAKRLFIEIRNANCEPDVV--SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLL 610 (721)
Q Consensus 533 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 610 (721)
++..-|+.++|..+.+++.... .|-.. -...++-+|...|+.....+++.-++.. ...|..-...++-.+.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444555666666666666522 11111 1233445566666665555555544442 233333333333344445556
Q ss_pred hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 611 SDAKSVYQKMVASGHKPNAC--VYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 611 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+....+.+-+.+. ..|... +-..|+-+|.-.|. .+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 6655555555443 233322 22344444555554 456666666663
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.14 E-value=12 Score=41.98 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHH
Q 004976 468 GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLF----DYNALMASLCKESSLEQA 543 (721)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A 543 (721)
++++.|+..+..+- ...|.......-+.|.+.+|+.++. |+.. .|...+.-+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45555555544432 2223333344445666666655542 2322 233333333444555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 544 KRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
.-.|+..=+ ....+.+|...|++.+|+.+..++.. ..+. .+-..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 555544322 11233455556666666665555432 1111 112445555666666666666666654
Q ss_pred H
Q 004976 622 A 622 (721)
Q Consensus 622 ~ 622 (721)
.
T Consensus 1027 s 1027 (1265)
T KOG1920|consen 1027 S 1027 (1265)
T ss_pred c
Confidence 3
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.08 E-value=3 Score=34.79 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=13.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC 183 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (721)
...+........++.+.+.+ +.+....+.++..|+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 33334444444444443333 223333344444443
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.07 E-value=0.14 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
.+|..++.++...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467778888888888888888888887754
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.80 E-value=0.15 Score=30.46 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQK 619 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~ 619 (721)
..|+.+|...|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.60 E-value=0.19 Score=29.46 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
.+|..++.++...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467788888888888888888888887754
No 294
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=1.7 Score=38.82 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
+..|+.|+..|.+++..+|. ....|..-+..+.+..+|+.+..=..++++.. +........++..+.+...++.|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHHH
Confidence 45778888888888887644 44556666777777888888888888887763 45555677777788888888888888
Q ss_pred HHHHH
Q 004976 125 IGLIL 129 (721)
Q Consensus 125 ~~~~~ 129 (721)
+.++.
T Consensus 101 Lqra~ 105 (284)
T KOG4642|consen 101 LQRAY 105 (284)
T ss_pred HHHHH
Confidence 77774
No 295
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.52 E-value=6.7 Score=39.15 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC---CC--CCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHH-------CCCCC---
Q 004976 566 INGTLKAGDLQSARELYNNMLQM---GL--PPD---ALTYSTLIHRFLRFGLLSDAKSVYQKMVA-------SGHKP--- 627 (721)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~--- 627 (721)
...+.-.|++.+|.+++...--. |. .|. -..|+.|+..+.+.|.+.-+..+|.+++. .|++|
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34556678888888877643221 21 111 23457788788888888888888888774 24333
Q ss_pred -------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 628 -------NACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCN 676 (721)
Q Consensus 628 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 676 (721)
+.++.+..+-.|...|+.-.|.+.|.++... +..++..|..+..+|..
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3456677788889999999999999888864 66678889888887654
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=4.8 Score=34.93 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=61.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004976 565 MINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ 642 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (721)
++..+...|++++|+..++..+......+. ..-..|+......|.+++|...+....+.+ -.......-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence 445667788888888888877753211111 222456677778888888888887765532 2233344567778888
Q ss_pred CChhHHHHHHHHHHHcC
Q 004976 643 GETEEVFDLIHEMADKG 659 (721)
Q Consensus 643 g~~~~A~~~~~~~~~~~ 659 (721)
|+.++|+.-|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888743
No 297
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=4.2 Score=33.92 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004976 106 SGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKA 185 (721)
Q Consensus 106 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (721)
..++..+...+.......+++.+...+. .++..++.++..|++.+. .+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3455555556666777777777666553 466667777777765432 333333331 1 1233344456666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHhHCCCCCCccchHHHHHHHH
Q 004976 186 KRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKD-GRVDEAMGLLEEMKAKGLDADVVVYSALISGFC 253 (721)
Q Consensus 186 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (721)
+-++++..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655422 12223333333 5666666655531 14445555555443
No 298
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.27 E-value=1.8 Score=35.09 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 524 LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHR 603 (721)
Q Consensus 524 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (721)
..++..++.++++.|+.+....+.+..=. +.++... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566677777777777777666654432 2211100 0000 11122356777788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcC
Q 004976 604 FLRFGLLSDAKSVYQKMVAS-GHKPNACVYDSLLKGFSSQ 642 (721)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 642 (721)
|+..|++..|.++.+..... +++-+..+|..|..-....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 88888888888888887765 6666677787777764443
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.17 E-value=9.9 Score=37.84 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
..|+...|-+...-++...+. .+..-.....++...|+|+++.+....+... +-....+...+++.....|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 367888887777777765544 2333334456678889999999988777654 23445566777888889999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 124 VIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNG 167 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 167 (721)
.-+.++..... ++.+....+..--..|-++++...++++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99888866544 55555444444556678899999998888765
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.14 E-value=1.8 Score=37.83 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
.+..++..|.+.|+.+.|.+.|.++.+....+.. ..+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666554322222 3344555555566666666666555544
No 301
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.06 E-value=6 Score=38.68 Aligned_cols=109 Identities=11% Similarity=-0.068 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 53 SLFQRAICSDRLPSGSVCNSLMEALVRSKN------------YEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKF 120 (721)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (721)
.-|++.+..+|. +..+|..++...-..-. .+.-+.+++++++.+ |.+...+...+..+.+..+.+.
T Consensus 6 ~el~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 345666666544 78888887764443222 345556666666664 4555666666666666666666
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHh---cCChhHHHHHHHHHH
Q 004976 121 ALGVIGLILKRGFVVNIYAFNLILKGFCR---KGEVNKAIELFGEIK 164 (721)
Q Consensus 121 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 164 (721)
..+.++.++... +.+..+|...+..... .-.++....+|.+.+
T Consensus 84 l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 84 LAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 666666666553 2355555555544433 123445555554443
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=5.6 Score=34.55 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 004976 391 GIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGII 470 (721)
Q Consensus 391 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (721)
.+...+++++|...++..+....+-.....+-..+.......|.+++|...++.....+ ........-+..+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCch
Confidence 34445555555555554443211111111122233344444555555555554443321 1111122223444455555
Q ss_pred HHHHHHHHHHHHc
Q 004976 471 DKALEMWKHLLEL 483 (721)
Q Consensus 471 ~~A~~~~~~~~~~ 483 (721)
++|...|+..++.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555544
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.98 E-value=11 Score=37.92 Aligned_cols=93 Identities=14% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGT--LKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFL 605 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (721)
+.+...+.+.|-+.+|..+|..+... ++|+...+..++..- ...-+..-+.++|+.|... +..|+..|.....--.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhc
Confidence 33444445555555666666555542 234444444444321 1122255556666666554 1255555555544445
Q ss_pred hcCCHhHHHHHHHHHHH
Q 004976 606 RFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (721)
..|..+.+-.++.++.+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 56666666666555554
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.98 E-value=11 Score=37.69 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC---------
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPP---DALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHK--------- 626 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------- 626 (721)
..+|..++..+.+.|+++.|...+.++...+... .+......+..+...|+..+|+..++..+.....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3466666777777777777777777766632111 2334444455566677777777776666551000
Q ss_pred ------------------------CCHHHHHHHHHHHHcC------CChhHHHHHHHHHHHcCCCCCHHH
Q 004976 627 ------------------------PNACVYDSLLKGFSSQ------GETEEVFDLIHEMADKGVHLDQEL 666 (721)
Q Consensus 627 ------------------------~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~ 666 (721)
.-..++..++...... +..+++...|+++.+ +.|+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k 293 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK 293 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH
Confidence 0123344555555555 788889999999987 6664433
No 305
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.96 E-value=2.6 Score=33.87 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH
Q 004976 591 PPDALTYSTLIHRFLRFGL---LSDAKSVYQKMVASG-HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQEL 666 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 666 (721)
.+...+-..+++++.+..+ ..+.+.+++...+.. ....-+....++-++++.|++++++++.+.+++ .+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcHH
Confidence 5666777788888887665 556778888888632 122344566677788999999999999999988 7787776
Q ss_pred HHHHHHH
Q 004976 667 TSTILVC 673 (721)
Q Consensus 667 ~~~ll~~ 673 (721)
...|-..
T Consensus 107 a~~Lk~~ 113 (149)
T KOG3364|consen 107 ALELKET 113 (149)
T ss_pred HHHHHHH
Confidence 6655444
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.94 E-value=11 Score=37.66 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 311 DVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKL---SVITYNVLIKGLCQKGLVGEAYEILNMMIE 375 (721)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 375 (721)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+..+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567777888888888888888888877643211 344555566677778888888888877776
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.86 E-value=0.17 Score=29.66 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 631 VYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 631 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+|..++..|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666666666666666665
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.72 E-value=21 Score=40.32 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHcCCCHHH
Q 004976 502 IGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVS----FNTMINGTLKAGDLQS 577 (721)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 577 (721)
.++++.|+..+..+. ...|......-.+.|-+.+|..++ .|+... |...+..+...+.+++
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccH
Confidence 345555555554442 223334444445566666666654 344443 4444455556777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHH
Q 004976 578 ARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVY---DSLLKGFSSQGETEEVFDLIHE 654 (721)
Q Consensus 578 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~ 654 (721)
|.-+|+..-+. ..-+.+|...|+|.+|..+..++.. +-.+.. ..|+..+...|++-+|.++.++
T Consensus 958 Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 958 AALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 77777655431 1334567778888888888777642 222222 5677778888888888888887
Q ss_pred HHH
Q 004976 655 MAD 657 (721)
Q Consensus 655 ~~~ 657 (721)
...
T Consensus 1025 ~~s 1027 (1265)
T KOG1920|consen 1025 YLS 1027 (1265)
T ss_pred Hhc
Confidence 763
No 309
>PRK09687 putative lyase; Provisional
Probab=92.64 E-value=9.6 Score=36.30 Aligned_cols=232 Identities=16% Similarity=0.080 Sum_probs=121.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGII----DKALEMWKHLLELGHVPNSVTYS 493 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~ 493 (721)
+..+....+.++...|. +.+...+..+.. .+++..-...+.++...|+. +++...+..+... .++.....
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444445544443 223333333332 23444445555555555542 3455555555332 23444444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 494 SMIDGFCKIGML-----NIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMING 568 (721)
Q Consensus 494 ~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (721)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ .+++..+-.+++ .+|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 455554443321 223333333222 2344555555666666665 456666666665 2344444444444
Q ss_pred HHcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhH
Q 004976 569 TLKAG-DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 569 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 647 (721)
+...+ ....+...+..++. .++..+-..-+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 54432 24466666666664 4566666666677777776 56666666666542 2 234566777777775 6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 648 VFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
|...+.++.+ -.||..+....+..|
T Consensus 253 a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 8888888876 456666666665554
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.62 E-value=1.4 Score=41.20 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 004976 597 YSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD-----KGVHLDQELTSTIL 671 (721)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ll 671 (721)
+..++..+...|+++.+.+.+++++... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.........
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3445555555566666666666665553 44555566666666666666666666655543 35555555554444
Q ss_pred HH
Q 004976 672 VC 673 (721)
Q Consensus 672 ~~ 673 (721)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.47 E-value=4.7 Score=33.93 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=57.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQMGLPPDAL-TYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ 642 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (721)
.++..-...++.+++..++..+.- +.|... .-..-+..+...|+|.+|+.+++.+.+.. +..+..-..+..++...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA-PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHc
Confidence 344455678899999999999988 456543 33344566789999999999999987653 32333333334444444
Q ss_pred CChhHHHHHHHHHHHc
Q 004976 643 GETEEVFDLIHEMADK 658 (721)
Q Consensus 643 g~~~~A~~~~~~~~~~ 658 (721)
|+. .=..+-.++++.
T Consensus 92 ~D~-~Wr~~A~evle~ 106 (160)
T PF09613_consen 92 GDP-SWRRYADEVLES 106 (160)
T ss_pred CCh-HHHHHHHHHHhc
Confidence 543 233444556653
No 312
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.36 E-value=11 Score=36.51 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=10.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHH
Q 004976 452 GNLVTFNILIGKYLTAGIIDKAL 474 (721)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~A~ 474 (721)
|+..-|...+.+++..++|++-.
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~ 228 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELE 228 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444444444444444444433
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.16 E-value=1.7 Score=37.98 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNANCEPDV--VSFNTMINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
..+..++..|.+.|+.+.|.+.|.++......+.. ..+..+++.....+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888889999999999999988875444433 35667778888888888888888887764
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.01 E-value=7.1 Score=33.36 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 193 DILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG 272 (721)
Q Consensus 193 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 272 (721)
++++.+...+++|+...+..++..+.+.|++..-. .++..++-+|.......+-. ..+....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 44444555556666666666666666666654432 23333333333332222211 112233344444444332
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004976 273 ISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWM 338 (721)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 338 (721)
=...+..++..+...|++-+|+++.+..... +......++++..+.+|...-..+++-.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1113344555566666666666666554221 1222233444444444444433333333
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.87 E-value=7 Score=32.95 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=27.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 110 EVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 110 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
..-.+.++.+++..++..+.-..|. .+..-..-+..+.+.|++.+|+.+|+.+...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3334455555555555555433222 2222233334455566666666666665544
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.79 E-value=3.1 Score=38.89 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhhHHH
Q 004976 103 LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKS-----NGVSPDNCSYNT 177 (721)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 177 (721)
.++..++..+...|+++.+...++...... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677777778888888888888887775 44777888888888888888888888877755 477777777766
Q ss_pred HHHH
Q 004976 178 IVNG 181 (721)
Q Consensus 178 l~~~ 181 (721)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.63 E-value=1.9 Score=36.80 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004976 471 DKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM-----------LNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESS 539 (721)
Q Consensus 471 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 539 (721)
++|+.-|++++..++. ....+..++.++...+. +++|...|+++... +|+..+|+.-+...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH-----
Confidence 4455555555555433 34555556655554321 34445555555544 55656665554443
Q ss_pred HHHHHHHHHHHHHc
Q 004976 540 LEQAKRLFIEIRNA 553 (721)
Q Consensus 540 ~~~A~~~~~~~~~~ 553 (721)
++|-++..++.+.
T Consensus 124 -~kap~lh~e~~~~ 136 (186)
T PF06552_consen 124 -AKAPELHMEIHKQ 136 (186)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhhHHHHHHHHHH
Confidence 2344455455443
No 318
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.53 E-value=13 Score=35.57 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHh--c----CChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCH---
Q 004976 121 ALGVIGLILKRGFVVNIYAFNLILKGFCR--K----GEVNKAIELFGEIKSNGV---SPDNCSYNTIVNGLCKAKRF--- 188 (721)
Q Consensus 121 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--- 188 (721)
...+++.+.+.|+..+..++.+....... . .....|..+|+.|.+... .++...+..++.. ..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34566666666666555444332222221 1 124456677777776532 1222233333222 22222
Q ss_pred -HHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcC-C--hhHHHHHHHHHhHCCCCCCccchHHHHHH
Q 004976 189 -KEALDILPDMEAVGCCPNLI-TYSTLMDGLCKDG-R--VDEAMGLLEEMKAKGLDADVVVYSALISG 251 (721)
Q Consensus 189 -~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (721)
+.+..+|+.+...|+..+.. -+.+-+-++.... . ..++..+++.+.+.|++.....|..++-.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34556666666655544333 1222222221111 1 23555666666666666555554444433
No 319
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=3.5 Score=36.94 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=81.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 004976 73 LMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGE 152 (721)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 152 (721)
-++-|+..+.|+.|+..|.+++..+ |.....|..-+.++.+..+++.+..--.++++.. +..+.....+...+.....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcc
Confidence 3556777788999999999999875 5555677888999999999999998888888764 3345667777888888999
Q ss_pred hhHHHHHHHHHHh----CCCCCChhhHHHHHHHH
Q 004976 153 VNKAIELFGEIKS----NGVSPDNCSYNTIVNGL 182 (721)
Q Consensus 153 ~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~ 182 (721)
+++|+..+.+... ..+++....+..|..+-
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999988743 23344445566665543
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.52 E-value=0.87 Score=29.99 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 631 VYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 631 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
.+..++.++.+.|++++|.++.+.+++ +.|++.....|-...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 345677788889999999999999988 888888877776654
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=11 Score=33.81 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=15.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCC
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGL 238 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~ 238 (721)
+...-...+++.+|+++|+++.....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344456677777777777665433
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.13 E-value=13 Score=36.34 Aligned_cols=107 Identities=9% Similarity=-0.037 Sum_probs=69.4
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCC------------hhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 004976 90 YSKMTCVHIFPSFLSLSGLIEVFVQTQK------------PKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAI 157 (721)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 157 (721)
|++.++.+ |.|..+|..++..--..-. .+.-+.+++++++.++ .+..+...++..+.+..+.+...
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 45556654 7888888888866443322 3345667888887754 57777777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 004976 158 ELFGEIKSNGVSPDNCSYNTIVNGLCK---AKRFKEALDILPDME 199 (721)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 199 (721)
+.+++++... +.+...|...+..... .-.++....+|.+..
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888763 3456677776665433 223455555555443
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.07 E-value=27 Score=38.19 Aligned_cols=226 Identities=13% Similarity=0.021 Sum_probs=118.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHH-HHHHHhcCCHhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 004976 322 LCKGGRATKAIDLLNWMVKKGEKLSVI-------TYNVL-IKGLCQKGLVGEAYEILNMMIEKG----MMPDVVSYNTLL 389 (721)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 389 (721)
.....++++|..++.++...-..|+.. .+..+ .......|+++.|.++.+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445778888888888876542222111 22222 233456788999999888887651 223344566677
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCCChh---hH--HHHHHHHHhcCC--hhHHHHHHHHHHHCCC--C----CChhh
Q 004976 390 MGIGKFGKVDEALELFNLVLKEEKYVQLDVV---TY--NNLIQGLCKEDR--LDEAVKIYHTMAERGI--S----GNLVT 456 (721)
Q Consensus 390 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~~~~~~--~~~A~~~~~~~~~~~~--~----~~~~~ 456 (721)
.+..-.|++++|..+.....+.... .+.. .+ ..-...+...|+ +.+....|........ . +-..+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~--~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQ--HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 7777889999999888777653111 1222 12 222334455663 3333344444332211 1 11233
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----H
Q 004976 457 FNILIGKYLTA-GIIDKALEMWKHLLELGHVPNSVTY--SSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYN----A 529 (721)
Q Consensus 457 ~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ 529 (721)
...+..++.+. +...++..-++......+.|-.... ..++......|+.++|...+.++......+...++. .
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44445555441 1122222222222222222222222 366777888999999999988887643333212111 1
Q ss_pred H--HHHHHhcCCHHHHHHHHHH
Q 004976 530 L--MASLCKESSLEQAKRLFIE 549 (721)
Q Consensus 530 l--~~~~~~~~~~~~A~~~~~~ 549 (721)
. ......+|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 1223457888888776655
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.87 E-value=0.43 Score=27.54 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
++..++.++.+.|++++|+..|++++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45667778888888888888888887753
No 325
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.80 E-value=0.18 Score=47.31 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=68.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+.-....|.++.|+..|..++..+ |+....+....+++++.++...|+.-+..++..++. ...-|-.-..+....|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhch
Confidence 444556678888888888888775 566667777788888888888888888888766543 222233333344556888
Q ss_pred hHHHHHHHHHHhCCCCCChhhH
Q 004976 154 NKAIELFGEIKSNGVSPDNCSY 175 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~ 175 (721)
++|...|....+.++.+....|
T Consensus 199 e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHHHhccccHHHHHH
Confidence 8888888888887655554444
No 326
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.65 E-value=17 Score=35.12 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC------
Q 004976 504 MLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK----ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAG------ 573 (721)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 573 (721)
+..+|..+++...+.|. ......++..|.. ..+..+|..+|+++...|..+.......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 34555555554444431 2222334444433 2366677777777766553322222344444443321
Q ss_pred -CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----
Q 004976 574 -DLQSARELYNNMLQMGLPPDALTYSTLIHRFLR----FGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQG----- 643 (721)
Q Consensus 574 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 643 (721)
+...|...|.++...+ +......++..|.. ..+.++|...|+++.+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2236777777777755 34444455544432 3367778888888877652 44444444 445444
Q ss_pred ----------ChhHHHHHHHHHHHcCCC
Q 004976 644 ----------ETEEVFDLIHEMADKGVH 661 (721)
Q Consensus 644 ----------~~~~A~~~~~~~~~~~~~ 661 (721)
+...|...+......+..
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 566666666666654433
No 327
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.59 E-value=29 Score=37.73 Aligned_cols=253 Identities=10% Similarity=0.037 Sum_probs=126.8
Q ss_pred cCChhHHHHHHHHHhHCC-CCCC--ccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 004976 220 DGRVDEAMGLLEEMKAKG-LDAD--VVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEA 296 (721)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 296 (721)
..+.+.|...+....... ..+. ..++..++......+..++|...+....... .+......-++.....++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777654332 1111 1122333333333322556666666544321 2333444445555677888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHH
Q 004976 297 IAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGE-AYEILNMMIE 375 (721)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 375 (721)
...+..|.... .-......-+++++...|+.++|...|+.+... .+|..++.. .+.|..-. ....... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCc-hh
Confidence 88887775532 223445666777777788888888888887432 123322211 11221100 0000000 00
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC
Q 004976 376 KGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGIS--GN 453 (721)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 453 (721)
..+..++ ....+..+...|....|...+..+... .+......+.......|.++.++.........+.. .-
T Consensus 403 ~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~-----~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 403 SALTQGP--EMARVRELMYWNMDNTARSEWANLVAS-----RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred hhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC
Confidence 0000011 123344566778888888888877752 24445566666666778888877766543321100 01
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004976 454 LVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSV 490 (721)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 490 (721)
+..|...+..+.....++.++-.--.-.+.+..|+..
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 2235556666666555665554333334555555543
No 328
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.53 E-value=17 Score=34.93 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----ChhHHHHHHHHHhHCC
Q 004976 190 EALDILPDMEAVGCCPNLITYSTLMDGLCK--DG----RVDEAMGLLEEMKAKG 237 (721)
Q Consensus 190 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~ 237 (721)
+.+.+++.+.+.|+..+..++.+....... .. ....|..+|+.|++..
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 445566666666666555444332222211 11 2345666666666653
No 329
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=14 Score=33.83 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=121.7
Q ss_pred ccCCCCCCCCcccccCCCccCCCCCC-cchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC
Q 004976 5 AAFNPCRSFPERILRLPVKCFSSVPQ-SDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRS-KN 82 (721)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 82 (721)
..|++-.|+|-...+-++........ ++...++|+++.+.. .-++|+++-+.++..+|. +..+|.---.++-.. .+
T Consensus 16 ~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~d 93 (318)
T KOG0530|consen 16 YDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNE-KSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSD 93 (318)
T ss_pred cccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHH
Confidence 45677777774444434333322222 246778898888554 447899999999888755 566665433333333 36
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004976 83 YEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPK-FALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFG 161 (721)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 161 (721)
..+=++++++....+ |.+-..|...-....-.|++. .-+++...++..+ ..+-.+|..---++..-+.++.-+....
T Consensus 94 L~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 777778888887765 566666655544555556666 5666777776543 3355556555555556677888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh-cCCH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 004976 162 EIKSNGVSPDNCSYNTIVNGLCK-AKRF-----KEALDILPDMEAVGCCPNLITYSTLMDGLCK 219 (721)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~-----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 219 (721)
++++.++. |..+||.-.-.... .|-. +.=+.+...++.. ++.|...|+.|...+..
T Consensus 172 ~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 172 ELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHh
Confidence 88877644 44466543211111 1211 1222333333332 35566778777666654
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.05 E-value=12 Score=32.93 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 004976 119 KFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN---GVSPDNCSYNTIVNGLCKAKRFKEAL 192 (721)
Q Consensus 119 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 192 (721)
+.|...|-.+-..+.-.++.....++..|. ..+.++++.++-++++. +-.+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555544444455666666666554 55667777777666543 22456667777777777777777663
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.98 E-value=0.75 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
..+++.++..+...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456778888888888888888888888754
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.84 E-value=0.32 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 632 YDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+..++.++.+.|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455555555555555555555554
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.71 E-value=0.91 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
.+|..++.++...|++++|...|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777777788888888887777664
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.22 E-value=0.66 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=12.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH
Q 004976 635 LLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 635 l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
++.+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.07 E-value=7.5 Score=32.14 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDAL-TYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGE 644 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 644 (721)
..-...++.+++..+++.+.- +.|+.. .-..-+..+...|+|.+|.++++...+.+ +..+..-..+..++...||
T Consensus 18 ~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA-GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC-CCchHHHHHHHHHHHhcCC
Confidence 334568889999999998887 445542 32334556788999999999999998753 2223233334444555554
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.38 E-value=9.1 Score=34.62 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCC-------HhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 004976 596 TYSTLIHRFLRFGL-------LSDAKSVYQKMVASGHK-----PNACVYDSLLKGFSSQGETEEVFDLIHEMADKG 659 (721)
Q Consensus 596 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 659 (721)
.+..+++.|...|+ +..|.+.|+++.+.... .+..+...++....+.|++++|.++|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555555555 33355555555543111 123455567777777788888888887777543
No 337
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.32 E-value=42 Score=36.50 Aligned_cols=56 Identities=11% Similarity=-0.083 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 004976 353 LIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVL 409 (721)
Q Consensus 353 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 409 (721)
-+......++++.+...+..|.... .....-..-++.++...|+.++|...|..+.
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344445666666655555553321 1233334444555555666666666666653
No 338
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.04 E-value=44 Score=36.31 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 572 AGDLQSARELYNNMLQMGLPPDAL-TYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.++.+.++.+|+.....+ .-+.. .|...+..-...|+...++.+++++...
T Consensus 475 ~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 475 LKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred hhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 455566666665555543 12222 3334444444445555555555555543
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.00 E-value=4.9 Score=35.25 Aligned_cols=73 Identities=11% Similarity=-0.004 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CCChhhHHHHHHHHHhcCChhHH
Q 004976 365 EAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYV-QLDVVTYNNLIQGLCKEDRLDEA 438 (721)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 438 (721)
+|...|-.+...+.--++.....++..|. ..+.++++.++-.+++....- .+++..+..++..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444333333333333333333 344444555444444432222 34444444444444444444443
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=6 Score=40.63 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=45.2
Q ss_pred HhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004976 218 CKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAI 297 (721)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 297 (721)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555443331 333455555555566666666555555432 223444444445544433
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004976 298 AMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW 337 (721)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 337 (721)
.+-....+.|.. |. ...+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g~~-N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN-NL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc-ch-----HHHHHHHcCCHHHHHHHHHh
Confidence 333333333211 11 11233445555555555443
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.87 E-value=34 Score=34.81 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 419 VVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDG 498 (721)
Q Consensus 419 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 498 (721)
......++..+.......-...+..+|...| .+...+..++.+|... ..++-..+|+++.+.... |...-..++..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3344444555555445555555555555543 3444555555555555 344555555555554433 33333344433
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Q 004976 499 FCKIGMLNIAKGIFSKMRVSGNDP--T---LFDYNALMASLCKESSLEQAKRLFIEIRN-ANCEPDVVSFNTMINGTLKA 572 (721)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 572 (721)
|.+ ++.+.+..+|.++...-++. + ...|..+... -..+.+....+..++.. .|...-.+.+..+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 333 55555555555554331110 0 1122222211 02334444444444433 12122223333344445555
Q ss_pred CCHHHHHHHHHHHHhC
Q 004976 573 GDLQSARELYNNMLQM 588 (721)
Q Consensus 573 g~~~~A~~~~~~~~~~ 588 (721)
.++++|++++..+++.
T Consensus 219 eN~~eai~Ilk~il~~ 234 (711)
T COG1747 219 ENWTEAIRILKHILEH 234 (711)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 5666666666655554
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.83 E-value=9.4 Score=34.54 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCChhH-------HHHHHHHHHhCCCCC-----CHhhHH
Q 004976 45 NSQYAEAVSLFQRAICSD----RLPS--GSVCNSLMEALVRSKNYEY-------AFSVYSKMTCVHIFP-----SFLSLS 106 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~~~~-----~~~~~~ 106 (721)
...+++|++.|..++... .+++ ..++..++..|...|+.+. |...|.++......| .....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 347888988888776433 2223 4566777888888888444 444444444332111 123445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 107 GLIEVFVQTQKPKFALGVIGLILKR 131 (721)
Q Consensus 107 ~l~~~~~~~~~~~~A~~~~~~~~~~ 131 (721)
.++....+.|++++|.++|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5666666666666666666666644
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.81 E-value=27 Score=33.67 Aligned_cols=80 Identities=18% Similarity=0.055 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--------
Q 004976 541 EQAKRLFIEIRNANCEPDVVSFNTMINGTLK----AGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG-------- 608 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 608 (721)
..|...|.++...+ +......++..|.. ..+..+|..+|.++.+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666666644 33444445544432 3467777777777777652 33333333 444444
Q ss_pred -------CHhHHHHHHHHHHHCCCCC
Q 004976 609 -------LLSDAKSVYQKMVASGHKP 627 (721)
Q Consensus 609 -------~~~~A~~~~~~~~~~~~~~ 627 (721)
+...|...+......+.+.
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChh
Confidence 6666677777766665333
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.80 E-value=2.7 Score=42.80 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=50.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004976 522 PTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLI 601 (721)
Q Consensus 522 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 601 (721)
|-..+.|..+-.+...|+...|.+.+..+....+....+....|+....+.|-..+|-.++.+.+... ...+-++..++
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc
Confidence 33333443333344456666666655555442211112233344455555555555555555555542 33344555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHHC
Q 004976 602 HRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+++....+.+.|++.|+.+++.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhc
Confidence 5665566666666666665554
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.47 E-value=1.4 Score=27.09 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 630 CVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888764
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.24 E-value=0.4 Score=45.07 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHH
Q 004976 536 KESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 536 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 614 (721)
..|.+++|++.|...+..+ ++....|..-..++.+.++...|+.=+..++. ++||. ..|-.-..+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3556666666666666543 23334444455556666666666666666665 34443 23434444455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 615 SVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
..+..+++.++.+....| +-...-..+..++-...+++..
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 666666665544333322 2223333444444444444444
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.19 E-value=35 Score=34.27 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=70.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEA 191 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 191 (721)
....|+...|.+-+..+++.. +.++.............|+++.+.+.+....+. +.....+...+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345666666666555555442 333333333344556667777777776555443 233445666677777777777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC
Q 004976 192 LDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD 239 (721)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 239 (721)
...-.-|....+. +...........-..|-++++.-.++++...+++
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7777776665443 2222222222333456667777777766655443
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.05 E-value=1.8 Score=43.96 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 541 EQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (721)
+-+-.++..|.+ .+.|--..+|..+-.+...|+...|...+..+..............|+....+.|...+|-.++.+.
T Consensus 590 e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 334444444433 2334444445445455678999999999999887431122345667888888999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH
Q 004976 621 VASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQEL 666 (721)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 666 (721)
+... ...+-++..+++++....+.++|++.++++.+ ..|+...
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~~~ 711 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK--LTTKCPE 711 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCChh
Confidence 8875 56677888999999999999999999999998 5665433
No 349
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.89 E-value=1.5 Score=43.50 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChh
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETE 646 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 646 (721)
-....+.++.|..++.++++. .|+- ..|..-..++.+.+++..|+.=+.++++.. +.-...|..-+.++.+.+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 344556677777777777773 4544 333444466777777777777777777653 333445666666677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 647 EVFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
+|...|+.... +.|+.+.....+..+
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 77777777766 777777777666663
No 350
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=86.30 E-value=4.7 Score=37.04 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004976 222 RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLD 301 (721)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 301 (721)
..+-....++.|.+.|+..|..+|..|++.+-+..- .|.. .+......|- .+-+-++.+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vfQ~~F~HYP--~QQ~C~I~vLe 147 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VFQKVFLHYP--QQQNCAIKVLE 147 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HHHHHHhhCc--hhhhHHHHHHH
Confidence 344444556667777777777777777766533221 1111 1111111121 12344677788
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCC
Q 004976 302 AMMERGIRPDVVTYTCLIEGLCKGGR 327 (721)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (721)
+|...|+.||..+-..++.++.+.+-
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccc
Confidence 88888888887777777777766654
No 351
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.17 E-value=6.9 Score=29.42 Aligned_cols=45 Identities=7% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
++.+-+..+...++.|++.+..+.+++|.+.+++.-|.++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555666666666666666666666666666544
No 352
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=85.84 E-value=8.4 Score=35.51 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=59.9
Q ss_pred CcchHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004976 276 NVVTYNSLMHCLCK-----IGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITY 350 (721)
Q Consensus 276 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 350 (721)
|..+|...+..+.. .+.++-....++.|.+-|+..|..+|..|+..+-+..- .| ..++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QNVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HHHH
Confidence 44555555554432 23445555555666666666666666665554422211 11 1112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 004976 351 NVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKV 398 (721)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 398 (721)
....--|-+ +-+=++.++++|...|+.||..+-..+++++.+.+..
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222111211 2244788999999999999999999999998887763
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.72 E-value=29 Score=31.89 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=120.4
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhc
Q 004976 431 KEDRLDEAVKIYHTMAERGIS---GNLVTFNILIGKYLTAGIIDKALEMWKHLLEL-----GHVPNSVTYSSMIDGFCKI 502 (721)
Q Consensus 431 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 502 (721)
+..++++|+.-|.++.+..-. .....+..++..+.+.+++++..+.|.+++.. ...-+....+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999998875312 22345567788889999999999999988642 1122455667777766666
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-------HHHHHHHH
Q 004976 503 GMLNIAKGIFSKMRVSG-NDPTL----FDYNALMASLCKESSLEQAKRLFIEIRNAN----CEPD-------VVSFNTMI 566 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-------~~~~~~l~ 566 (721)
.+.+--.++++.-++.- ...+. .+-..++..|...+++.+-.+++.++.+.- -..| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66666666665443210 01122 234567888888888888888887776531 1112 13455556
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCC-CCCChhhHHHH----HHHHHhcCCHhHHHHHHHHHHH
Q 004976 567 NGTLKAGDLQSARELYNNMLQMG-LPPDALTYSTL----IHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
..|....+-.....+|++.+... .-|.+.....+ +..+.+.|.+++|-.-|-++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 77778888888888888876541 12344333222 2345677888887665555443
No 354
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=55 Score=35.06 Aligned_cols=125 Identities=12% Similarity=0.100 Sum_probs=80.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004976 565 MINGTLKAGDLQSARELYNNMLQMGLPPDA--LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ 642 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (721)
++-++...|+-++|..+++++.... .|-. .....++.+|+-.|+.....+++.-++.. ...|..-...++-.+.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEe
Confidence 3445666777888888888888753 3322 12345666778888877777777766654 244555555555556667
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCchhhHhhHHHHHHh
Q 004976 643 GETEEVFDLIHEMADKGVHLDQELTS-TILVCLCNISEDLDVAKLFPTFSQ 692 (721)
Q Consensus 643 g~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~~ 692 (721)
.+.+.-..+..-+.+. .+|-...-. ..++-.|.-.|..++..+++.++.
T Consensus 585 ~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7888888888777663 555322221 233445777888899988888776
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.09 E-value=24 Score=36.52 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=21.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 114 QTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIK 164 (721)
Q Consensus 114 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 164 (721)
+.|+++.|.++..++ .++.-|..|..+....|++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 445555554443333 133345555555555555555555554443
No 356
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=17 Score=32.88 Aligned_cols=99 Identities=14% Similarity=0.011 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCH----------hhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-------HIFPSF----------LSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
.+++...-++-+++.|+|.+|...|++++.. ..|.++ ..+....+++...|++-++++.-..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4456666788888999999998888887632 111111 11223334444444444444444444
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 129 LKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKS 165 (721)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 165 (721)
++.. +.+..+|..-+.+.+..-+..+|..-|..+++
T Consensus 257 L~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4442 23444444444444444444444444444444
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.57 E-value=1.6 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004976 70 CNSLMEALVRSKNYEYAFSVYS 91 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~ 91 (721)
...++..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4556777777777777777665
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.49 E-value=35 Score=31.79 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=68.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-----CCCCH--------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhH
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVH-----IFPSF--------LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAF 140 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 140 (721)
+..+.-..||..|+..+++..+.- ...+. .....-|+++...+++.+++.+.-+.-..--+..+.+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 344444556777777777665541 00110 11234567777777777777666555432222334455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hcCCHHHHHHHH
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC-----KAKRFKEALDIL 195 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~ 195 (721)
..-|-.|.+.|++..+.++-...++.--+-+...|..++..|. =.|.+++|.++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5555667777777777777777665422223334655555544 357777776666
No 359
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.22 E-value=26 Score=30.07 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCC
Q 004976 158 ELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKG 237 (721)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 237 (721)
+.++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+ .+.+..+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 34455555666777777777777777777665544443 333334443332222111 12223333333333332
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 238 LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMME 305 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 305 (721)
=...+..++..+...|++-+|.++.+..... +...-..++.+..+.+|..--..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113455666677777777777776654322 222223445555555555444444444333
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.69 E-value=71 Score=34.73 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 004976 138 YAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKR-------FKEALDILPDMEAV 201 (721)
Q Consensus 138 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~ 201 (721)
...-.++-.|.|+|++++|.++.....+. +......+...+..|....+ -++...-|++....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 33445667788999999999999555443 24445566677777765422 23555566665554
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.62 E-value=24 Score=29.30 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=21.9
Q ss_pred cCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 220 DGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
.++.+++..+++.+.-..+. ....-..-+..+...|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44555555555544433222 222222223334455555555555555544
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.46 E-value=9.4 Score=33.79 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 529 ALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 529 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
..+..+.+.+...+++...+.-++.. +.|...-..++..++-.|++++|..-++-+.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 33445555666666666666555543 22333445556666666666666666665555
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.28 E-value=1.5 Score=23.69 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCChhHHHHHHH
Q 004976 633 DSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 633 ~~l~~~~~~~g~~~~A~~~~~ 653 (721)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 364
>PRK09687 putative lyase; Provisional
Probab=82.86 E-value=45 Score=31.84 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=99.5
Q ss_pred ChhhHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCC
Q 004976 418 DVVTYNNLIQGLCKEDRL----DEAVKIYHTMAERGISGNLVTFNILIGKYLTAGI-----IDKALEMWKHLLELGHVPN 488 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~ 488 (721)
+...-...+.++...|+. .++...+..+... .++..+....+.++...+. ...+...+..+.. .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 344444444455555542 2445555444322 3344444444444433321 1223333333322 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 489 SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKES-SLEQAKRLFIEIRNANCEPDVVSFNTMIN 567 (721)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 567 (721)
..+-...+.++.+.++ ..++..+-.+.+. ++..+-...+.++...+ +...+...+..++. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555566666666665 4455555555542 33344444444454432 23455555555553 345555556666
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGF 639 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 639 (721)
++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|+..+..+... .+|..+-.....++
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6666666 45666666665532 2 233555666666764 577777777653 34555444444333
No 365
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.86 E-value=59 Score=33.20 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMIN 567 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 567 (721)
|......++..+...-.+.-...+-.++...| .+-..+..++++|... ..++-..+|+++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45556666666766666666677777777663 2556677777777766 566677788877775532 4555555665
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPD-----ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS-GHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 641 (721)
.|.+ ++...+..+|.++...-++.. .+.|..+.. .-..+.+.-..+..++... |..--...+..+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 777888888888776533211 134444433 1234566677777776654 433334456666677888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004976 642 QGETEEVFDLIHEMADKGVHLDQELTSTILVCLC 675 (721)
Q Consensus 642 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 675 (721)
..++++|++++...++.+ +.|.-.-..++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 889999999999888742 234444445555543
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=88 Score=35.02 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=42.4
Q ss_pred CcchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHhC
Q 004976 30 QSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSL----MEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 30 ~~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
.++++.++..++. +.++++|+.+-+-....+|.....+-..- +-.++.+|++++|...|+++...
T Consensus 307 ~~~~~~qi~~lL~--~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 307 VSNFEKQIQDLLQ--EKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred ccchHHHHHHHHH--hhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 3347888888887 44688888877766544433222221111 33477899999999999998654
No 367
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.29 E-value=7.9 Score=29.47 Aligned_cols=45 Identities=7% Similarity=0.172 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 613 AKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 613 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..+-+..+...++.|++.+....+++|.+.+++.-|.++++-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445566666666666666666666666666665553
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.27 E-value=44 Score=31.32 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
++......|...|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34556677888888899998888888854 4556677778888888888777777777665
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.75 E-value=47 Score=31.29 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHH
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
.++.....++..|.+.|++.+|...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35667777777777777777776655
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.36 E-value=2.3 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 632 YDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
|..++.++...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555555555555555555544
No 371
>PRK12798 chemotaxis protein; Reviewed
Probab=81.16 E-value=62 Score=32.30 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 004976 325 GGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL-CQKGLVGEAYEILNMMIEKGMMPDV----VSYNTLLMGIGKFGKVD 399 (721)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 399 (721)
.|+..++.+.+..+.....++....+..|+.+- ....+...|+.+|+...-. .|-+ ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 455555555555554444444444444444332 2334555666666554432 1221 12333334445556665
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 400 EALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAER-GISGNLVTFNILIGKYLTAGIIDKALEMWK 478 (721)
Q Consensus 400 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (721)
++..+-.+.........--...+..+...+.+.++-..-.. +..+... ........|..+.+.-.-.|+.+-|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55544444443211111111122223333333332111111 2222221 111123456666666666777777766666
Q ss_pred HHHHc
Q 004976 479 HLLEL 483 (721)
Q Consensus 479 ~~~~~ 483 (721)
++...
T Consensus 282 ~A~~L 286 (421)
T PRK12798 282 RALKL 286 (421)
T ss_pred HHHHh
Confidence 66654
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.74 E-value=24 Score=26.61 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 52 VSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
+..++..+..+|. +...-..++..+...|++++|+..+-.+++.+
T Consensus 8 ~~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445556665544 66777777788888888888888877777664
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.62 E-value=4.9 Score=40.12 Aligned_cols=93 Identities=14% Similarity=0.017 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 004976 35 TQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ 114 (721)
Q Consensus 35 ~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (721)
+.....+. ...|+.|+.++.+++..++. .+..|..-..++.+.+++..|+.=+..+++.+ |.....|..-+.++..
T Consensus 9 ~ean~~l~--~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 9 NEANEALK--DKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMA 84 (476)
T ss_pred hHHhhhcc--cchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHh
Confidence 33444444 45788888888888877643 55555555677777888888888888877765 5555667777777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 004976 115 TQKPKFALGVIGLILKR 131 (721)
Q Consensus 115 ~~~~~~A~~~~~~~~~~ 131 (721)
.+++.+|...|+.....
T Consensus 85 l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 77888887777777654
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.51 E-value=3.7 Score=22.75 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
.|..++..+...|+++.|...|+++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4667777777788888888888777654
No 375
>PRK10941 hypothetical protein; Provisional
Probab=79.50 E-value=26 Score=33.00 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 71 NSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF 133 (721)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 133 (721)
+.+-.++.+.++++.|+++.+.++... |.++.-+...+-.+.+.|.+..|..-++..++..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 345567888999999999999999875 77788888888889999999999998888887643
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.45 E-value=52 Score=30.34 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH
Q 004976 493 SSMIDGFCKIGMLNIAKGIFSKMRVSGNDP-----------TLFDYNALMASLCKESSLEQAKRLFIEIRNA-NCEPDVV 560 (721)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 560 (721)
..+...|...|.+.+...+++++..+.... -..+|..=+++|..+++-.+-..+|++.+.. .--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 445566666666666666666665431110 1234444556666666666666667666541 1123332
Q ss_pred HHHHH----HHHHHcCCCHHHHHHHHHHH
Q 004976 561 SFNTM----INGTLKAGDLQSARELYNNM 585 (721)
Q Consensus 561 ~~~~l----~~~~~~~g~~~~A~~~~~~~ 585 (721)
....+ +.+..+.|.+++|-.-|-++
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 22221 12334566676665444333
No 377
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.27 E-value=26 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 190 EALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 190 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666666677777777777777777777777777777654
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.84 E-value=17 Score=32.34 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG--HKPNACVYDSLLKGF 639 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 639 (721)
....+..+.+.+..++|+...+.-++.+ |.|..+-..+...++-.|+|++|..-++-+-... ..+....|.+++++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3445567788899999999998888864 6667777888999999999999999888877652 234456677776642
Q ss_pred HcCCChhHHHHHHHHHHHcCCCC-----CHHHHH-HHHHHH-HhcCchhhHhhHHHHHHhccC
Q 004976 640 SSQGETEEVFDLIHEMADKGVHL-----DQELTS-TILVCL-CNISEDLDVAKLFPTFSQETS 695 (721)
Q Consensus 640 ~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~-~ll~~~-~~~~~~~~~~~~~~~~~~~~~ 695 (721)
.. -+.....+..| +...|. .++.++ +...|.-++...+.+...+.-
T Consensus 83 a~----------R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa 135 (273)
T COG4455 83 AA----------RNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAA 135 (273)
T ss_pred HH----------HHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhC
Confidence 22 12222223333 223333 444444 334456777777766655544
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.46 E-value=30 Score=32.01 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|...++..++- .|...|+.++|.++.+++.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35566666666542 14554443332222 25568999999988888764
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.15 E-value=1.9e+02 Score=36.18 Aligned_cols=315 Identities=13% Similarity=0.043 Sum_probs=173.6
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004976 44 PNSQYAEAVSLFQRAICSD-RLPSGSVCNSLM-EALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFA 121 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 121 (721)
.-+.|.+|+-.+|+..... .....+.+..+. ..|+..+++++...+...-.. .+ .+...+......|+++.|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHhhccHHHH
Confidence 3568999999999852222 122334444444 499999999999999885211 11 244555667788999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHh
Q 004976 122 LGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIV-NGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~ 200 (721)
...|+++.+.++ +.+..++.++......|.++..+...+-.... .++....|+.+. .+-.+.++++....... .
T Consensus 1469 ~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 999999988763 35667888888888889998888877666544 244444555443 34467888888777765 2
Q ss_pred CCCCCCHhhHHH--HHHHHHhcCChh--HHHHHHHHHhHCCCCC---------CccchHHHHHHHHhcCChhHHHHHHHH
Q 004976 201 VGCCPNLITYST--LMDGLCKDGRVD--EAMGLLEEMKAKGLDA---------DVVVYSALISGFCSNGSFDKGKKLFDD 267 (721)
Q Consensus 201 ~~~~p~~~~~~~--l~~~~~~~~~~~--~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (721)
. +..+|.. ++..+.+...-+ .-.+..+-+.+.-+.+ -...|..++..+.-..--.....+...
T Consensus 1544 ~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1544 R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKV 1619 (2382)
T ss_pred c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 3333333 233333322211 1112233222211110 012233333332221111111111100
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004976 268 MLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDA-MMER----GIRP-DVVTYTCLIEGLCKGGRATKAIDLLNWMVKK 341 (721)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 341 (721)
-......-+..-|..-+..-....+..+-+--+++ +... +... -...|...++.....|+++.|...+-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 00000111122233333222222222222212222 1111 1111 1456788888888899999998887777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 342 GEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK 376 (721)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (721)
+ -+..+...+..+-..|+...|+.++++.++.
T Consensus 1700 r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1700 R---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4 3456667788888999999999999998865
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.02 E-value=78 Score=31.59 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=63.4
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH--
Q 004976 134 VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYS-- 211 (721)
Q Consensus 134 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-- 211 (721)
+-.+.++..+...+.++|+.+.|..++++++-. -..++......+........+. ......-|...|.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~r------L~~~~~eNR~fflal 106 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNCR------LDYRRPENRQFFLAL 106 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCccc------cCCccccchHHHHHH
Confidence 556677777777777777777777777776531 1111111111100000000000 0000011222222
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHH-hcCChhHHHHHHHHHHh
Q 004976 212 -TLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFC-SNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 212 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 270 (721)
..+..+.+.|.+..|.++.+-+...++.-|+......|..|+ +.++++--+++++....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 233455667777777777777777665555555555555543 55666666666665543
No 382
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.00 E-value=34 Score=32.73 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHH
Q 004976 527 YNALMASLCKESSLEQAKRLFIEIRNAN-CEP--DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LTYSTLIH 602 (721)
Q Consensus 527 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 602 (721)
|..=+.-|.+.+++..|...|.+-++.. ..| +.+.|+.-+.+-...||+..|+.=...++. +.|+. ..|..-+.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhH
Confidence 3333444445555555555554444321 112 223344444444444555555554444444 22322 23333344
Q ss_pred HHHhcCCHhHHHHHHHHH
Q 004976 603 RFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~ 620 (721)
++....++.+|...+++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 444444444444444433
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.97 E-value=9.2 Score=25.24 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
.+.++.++.+.|++++|+++.+.+++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4556777788888888888888888764
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.75 E-value=30 Score=26.10 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=15.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004976 99 FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR 131 (721)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 131 (721)
|.+......++..+...|++++|.+.+-.+++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444444555555555555555555555555443
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.70 E-value=39 Score=33.30 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANC--EPDVVSFNTMINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
.+..++.-|..+|+.+.|++.|-++...-. +..+..|..++..-.-.|++.....+..++.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 556677777778888888888877654211 112224445555566677777777777777663
No 386
>PRK10941 hypothetical protein; Provisional
Probab=76.69 E-value=23 Score=33.32 Aligned_cols=59 Identities=5% Similarity=-0.049 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.+-.+|.+.++++.|.+..+.++... |.++.-+..-+-.|.+.|.+..|..-++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345556667777777777777777663 55666666666777777777777777777665
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.68 E-value=32 Score=28.02 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
.|+-++.+.+++++++.+.+.+++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555555555554
No 388
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=10 Score=36.04 Aligned_cols=101 Identities=12% Similarity=-0.028 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI---FPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFN 141 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 141 (721)
..+..|-.=++-|++.++|..|+..|...+.... ..+...|...+.+..-.|++..|+.-...+++.++ .+..++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P-~h~Ka~~ 157 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP-THLKAYI 157 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhh
Confidence 3556677789999999999999999999988742 22345677888888899999999999999998864 4677788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.-+.++....++..|....++....
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888899999999999988887654
No 389
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.19 E-value=1.3e+02 Score=33.25 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=55.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
=..|.+.|+|++|+++.+.-. ..-...+..-+..+.+.+++..|.++|....+ .+..+.--+....+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p----~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRP----DALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHHHhcchHHHHHHhccCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCH
Confidence 356888899999988765431 11234567777888899999999999888732 244555556666666
Q ss_pred hHHHHHHHHHHhCCCCCChh
Q 004976 154 NKAIELFGEIKSNGVSPDNC 173 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~ 173 (721)
+.-..++.+-+++ ++|...
T Consensus 433 ~~L~~~L~KKL~~-lt~~dk 451 (911)
T KOG2034|consen 433 RALRTFLDKKLDR-LTPEDK 451 (911)
T ss_pred HHHHHHHHHHHhh-CChHHH
Confidence 6444444444443 244433
No 390
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.68 E-value=64 Score=29.44 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 596 TYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
.+.++..++...|++-++++...+++... +.+...|..-+.+....=+..+|..-+.+.++ +.|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 34566677788888888888888888763 66778888888888888888888888888887 5563
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.60 E-value=8.5 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004976 283 LMHCLCKIGQWKEAIAMLDAMM 304 (721)
Q Consensus 283 l~~~~~~~g~~~~A~~~~~~~~ 304 (721)
+..+|...|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444444444444444444444
No 392
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.88 E-value=34 Score=25.91 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=43.1
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMT 94 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 94 (721)
.+..+....+..++-+.-++.+-++.+...+..|++.+..+.+.++.|-+++.-|+++|+-..
T Consensus 7 eF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 7 EFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555655544556677777777777766777777777777777777777777777655
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.96 E-value=81 Score=29.81 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 004976 45 NSQYAEAVSLFQRAIC-SDRLPSGSVCNSLMEALVR-SK----NYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKP 118 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (721)
|.-.-+|+.+|+..-. ...-.+.++-..+++.... .+ -+-+.+.++.+ ..+..++..+...++..++..+++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~--t~~~~l~~~vi~~Il~~L~~~~dW 218 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS--TFSKSLTRNVIISILEILAESRDW 218 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh--ccccCCChhHHHHHHHHHHhcccH
Confidence 4455677777773211 1122344555555544444 12 12222222221 112466777788888888889999
Q ss_pred hHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCChhhHHHHHHHH
Q 004976 119 KFALGVIGLILKR-GFVVNIYAFNLILKGFCRKGEVNKAIELFGE-----IKSNGVSPDNCSYNTIVNGL 182 (721)
Q Consensus 119 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 182 (721)
..-.++++..... ++..|...|...+..-...|+..-..++.+. +.+.+++.+...-.++-+.+
T Consensus 219 ~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 219 NKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8888888887655 5667788888888888888988777777664 23445555555555544443
No 394
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.87 E-value=1.5e+02 Score=32.33 Aligned_cols=102 Identities=9% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004976 249 ISGFCSNGSFDKGKKLFDDMLEKGISP---NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG 325 (721)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (721)
+.-+.+.+.+++|....+..... .| -...+...+..+.-.|++++|-...-.|... +...|......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455566666666655544332 22 1234555666666677777777766666653 444455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004976 326 GRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ 359 (721)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (721)
++......+ +.......++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 544332221 1111122345556655555544
No 395
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.45 E-value=1.2e+02 Score=30.99 Aligned_cols=122 Identities=14% Similarity=0.041 Sum_probs=64.0
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHh--hHHHHHHH-HHhcCChhHHHHHHHHHHHCC-CCcC-----HHhH
Q 004976 72 SLMEALVRSK--NYEYAFSVYSKMTCVHIFPSFL--SLSGLIEV-FVQTQKPKFALGVIGLILKRG-FVVN-----IYAF 140 (721)
Q Consensus 72 ~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~ 140 (721)
.++..+...| +...+++..+-.....++.-.. +...++.. +.-..+++.|...++.+.... .-|+ -.++
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 3455555555 5666666666555432211111 12233332 335667777777777665321 1122 2355
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHH
Q 004976 141 NLILKGFCRKG-EVNKAIELFGEIKSNGVSPDNCSYN-----TIVNGLCKAKRFKEALDIL 195 (721)
Q Consensus 141 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~ 195 (721)
+.+...|.... .+..+..++++.++. ..+...|. .++..+.-..++..|.+++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaiel--sq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIEL--SQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHH--hcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 66666666555 677777777777654 22333333 3444555566777777664
No 396
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.86 E-value=33 Score=32.43 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004976 486 VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGND---PTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSF 562 (721)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 562 (721)
.....+...++.......+++.+..++-++..+..- ++. +....++.+. .-++++++.++..=++.|+-||..+.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 334444555555555567778888777777654210 111 1122233332 33566777777777777888888888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 563 NTMINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
+.+++.+.+.+++.+|..+.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888877776654
No 397
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.88 E-value=93 Score=29.18 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=47.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCcCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----
Q 004976 102 FLSLSGLIEVFVQTQKPKFALGVIGLIL----KRGFVVNIYAF-NLILKGFCRKGEVNKAIELFGEIKSNGVSPDN---- 172 (721)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 172 (721)
..++..++..|.+.++.+.+.++..+.. ..|.+-++... ..++-.|....-+++-++..+.+.+.|-.=+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4456667777777777666666554433 33333333222 12233344444456666666666666522111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 173 CSYNTIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 173 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
.+|..+. +....++.+|-.++.....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 1222221 2234556666666655543
No 398
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.15 E-value=1.7e+02 Score=31.90 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004976 280 YNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG 325 (721)
Q Consensus 280 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (721)
...++-.+.+.|++++|.++....... .......+...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 334555666777777777766443332 233344455555555443
No 399
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.30 E-value=29 Score=26.21 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 613 AKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 613 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
-.+.++++...+....+-...+|+-.|.+.|+.+.|.+-|+.=.. +.|++.++...+
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 345566666554444455566777788888888888888876554 677776665444
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.05 E-value=24 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
.++......|++++|+..++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555566666666666665543
No 401
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.77 E-value=2.7 Score=35.26 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004976 113 VQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFG 161 (721)
Q Consensus 113 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 161 (721)
.+.+.+..+..+++.+...+...++...+.++..|++.++.+.....++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444444444444443333344444445555544444444444333
No 402
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.71 E-value=79 Score=30.45 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=49.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCChh-hHHHH
Q 004976 532 ASLCKESSLEQAKRLFIEIRNA---NCEPDVVSF--NTMINGTLKAGDLQSARELYNNMLQ-----MGLPPDAL-TYSTL 600 (721)
Q Consensus 532 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~l 600 (721)
....+.++.++|+++++++... .-.|+.+.+ ..+++++...|+.+++.+.++...+ .+++|+.. .|+.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3444566788888888877652 224555544 3445666777888888888777776 36666543 34444
Q ss_pred HHHHH-hcCCHhHH
Q 004976 601 IHRFL-RFGLLSDA 613 (721)
Q Consensus 601 ~~~~~-~~g~~~~A 613 (721)
..-|. ..|++...
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 44333 34444443
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.34 E-value=84 Score=29.09 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhC---CCCCChhhHHHH-----HHHHHhcCCHhHHHHHHHHHHHC
Q 004976 575 LQSARELYNNMLQM---GLPPDALTYSTL-----IHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 575 ~~~A~~~~~~~~~~---~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.+.|.+.|+++.+. .++|...++..+ +..|-..|+.++|.++.+++.+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35566666665543 256665554333 23345689999999988887653
No 404
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.08 E-value=2.3 Score=35.74 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=19.8
Q ss_pred HHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHH
Q 004976 217 LCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLF 265 (721)
Q Consensus 217 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 265 (721)
+.+.+.++....+++.+...+...+....+.++..|++.++.++...++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444443333333444444444444444444444333
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.02 E-value=1.1e+02 Score=28.86 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCChh-H
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV----HIFPSFLSLSGLIEVFVQTQKPK-F 120 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~-~ 120 (721)
++|++|++++.. -+..+.+.|++..|-.+..-+++. +.+.+......++..+...+.-+ .
T Consensus 4 kky~eAidLL~~---------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~ 68 (260)
T PF04190_consen 4 KKYDEAIDLLYS---------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE 68 (260)
T ss_dssp T-HHHHHHHHHH---------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT
T ss_pred ccHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch
Confidence 466666665543 244556666666665554444433 55666666666666666554322 2
Q ss_pred HHHHHHHHH---HCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 121 ALGVIGLIL---KRG--FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDIL 195 (721)
Q Consensus 121 A~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 195 (721)
-.++...++ +.+ ..-++.....++..|.+.|++.+|+.-|-... .++...+..++..+...|...++
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~---- 140 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA---- 140 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H----
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch----
Confidence 223333333 221 22456788888888888888888876554222 12333332233333333333322
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 196 PDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 196 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
+... ...+-.|.-.++...|...++...+.
T Consensus 141 ----------dlfi-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----------DLFI-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----------hHHH-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111 12223345567788787777666543
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.97 E-value=42 Score=26.84 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=22.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 618 QKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..+...++.|++.+...-++++.+.+|+..|.++++-...
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333444555666666666666666666666666655543
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.69 E-value=31 Score=26.23 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=27.1
Q ss_pred HhcCCHhHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 605 LRFGLLSDAKSVYQKMVAS----GHKP----NACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|++.+|.+.+.+..+. +... -......++......|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556666665555544432 1111 012233445556666777777777766664
No 408
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.51 E-value=2.5e+02 Score=32.43 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 139 AFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD----NCSYNTIVNGLCKAKRFKEALDIL 195 (721)
Q Consensus 139 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 195 (721)
.|..+++.+-+.+-.+.+.++...+++. ++++ ..+++.+.+-....|.+-+|.+.+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 4566677777777777777777666654 1222 124555666666667666665544
No 409
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.05 E-value=1.8e+02 Score=30.55 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRL-----------PSGSVCNSLMEALVRSKNYEYAFSVYSKMT 94 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 94 (721)
...|.+|...|.-+....++ ...++...++.++..+|+.+-|-.+.++.+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45788888888877665422 233566677778888888777666655554
No 410
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.19 E-value=77 Score=29.08 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
..+..-|-.....+ ....-..-+-.+...+++++|+..+..- ...+.-...+++++...|+...|..++...
T Consensus 63 ~~~~~~Fa~~f~ip---~~~~~~~~g~W~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 63 SELAESFARAFGIP---PKYIKFIQGFWLLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred ccHHHHHHHHhCCC---HHHHHHHHHHHHhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 55666666665543 2222223344455567888888776322 111222346888888899999999998886
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 129 LKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC 183 (721)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (721)
. .+..+......++.. ..++.+.+|...-+...+. .....+..++..+.
T Consensus 135 ~--p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 135 G--PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred C--CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 2 122233444444444 6778999998877776653 12456666666655
No 411
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=65.09 E-value=2.2e+02 Score=31.35 Aligned_cols=113 Identities=8% Similarity=-0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCChhHHHHHHH
Q 004976 50 EAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFV---QTQKPKFALGVIG 126 (721)
Q Consensus 50 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~ 126 (721)
+=++-++.-+..+ ..+...+..|+..+.+.|++++....-+.|.+. .|.++..|...+.... ..++...+...|+
T Consensus 97 ~ei~t~~ee~ai~-~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 97 QEIRTLEEELAIN-SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred hHHHHHHHHhccc-ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3344444444433 336777888999999999999988888888776 3677777766654433 4567777888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHH-------HhcCChhHHHHHHHHHHhC
Q 004976 127 LILKRGFVVNIYAFNLILKGF-------CRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~ 166 (721)
.++.... ++..|..++..+ ...++++..+.+|.++++.
T Consensus 175 kal~dy~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 175 KALGDYN--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHhcccc--cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 8875433 333444444333 3346778888888887754
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.93 E-value=20 Score=25.94 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHhcCCHhHHHH
Q 004976 599 TLIHRFLRFGLLSDAKS 615 (721)
Q Consensus 599 ~l~~~~~~~g~~~~A~~ 615 (721)
.++.+|+..|++.++++
T Consensus 48 ~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 48 YLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.67 E-value=1.2e+02 Score=27.66 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=45.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 589 GLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS-G-----------HKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
+++-+......++ +...|+..+|+..++.-..- | -.|++.....++..|. .+++++|.+.+.++.
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3444444444333 34566666666665554321 1 1467776666666554 478889999999988
Q ss_pred HcCCCCCHHH
Q 004976 657 DKGVHLDQEL 666 (721)
Q Consensus 657 ~~~~~p~~~~ 666 (721)
+.|+.|.+.+
T Consensus 266 ~lgysp~Dii 275 (333)
T KOG0991|consen 266 KLGYSPEDII 275 (333)
T ss_pred HcCCCHHHHH
Confidence 8888876544
No 414
>PRK12798 chemotaxis protein; Reviewed
Probab=63.57 E-value=1.7e+02 Score=29.44 Aligned_cols=193 Identities=10% Similarity=-0.010 Sum_probs=110.1
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhH
Q 004976 359 QKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGI-GKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDE 437 (721)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 437 (721)
-.|+..++.+.+..+.....++....+..|+.+- ....+..+|+++|+.+.-..|+.-........-+......|+.++
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 4788899999998887666666666666666654 455678999999998876555544455566666667778888888
Q ss_pred HHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004976 438 AVKIYHTMAERGISGNLVT---FNILIGKYLTAGIIDKALEMWKHLLEL-GHVPNSVTYSSMIDGFCKIGMLNIAKGIFS 513 (721)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 513 (721)
+..+-.+...+- ..++.. +..+...+.+.++-..- +.+..++.. ...--...|..+.+.-.-.|+.+-|...-+
T Consensus 204 f~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 204 FEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 877766655431 222222 12222233333322111 223333322 222235567777777777888888777777
Q ss_pred HHHHcCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCC
Q 004976 514 KMRVSGNDPTLFDYNALMASL-----CKESSLEQAKRLFIEIRNANC 555 (721)
Q Consensus 514 ~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~ 555 (721)
+........+. -...+..| .-..+++++.+.+..+-....
T Consensus 282 ~A~~L~~~~~~--~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 282 RALKLADPDSA--DAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHhccCCCc--chHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 76655322111 11111122 123456666666666554333
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.69 E-value=1.9e+02 Score=29.66 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=74.6
Q ss_pred HhcCChhHHHHHHHHHHHCCC-CCChh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 004976 430 CKEDRLDEAVKIYHTMAERGI-SGNLV--------TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTY--SSMIDG 498 (721)
Q Consensus 430 ~~~~~~~~A~~~~~~~~~~~~-~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~ 498 (721)
.-.|++.+|++-+..|.+.-. .|.+. ....++..+...+.++.|...|..+.+.-...|...+ ..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 346788888887777765311 12211 1122222334567788888777777665333333222 334455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHH
Q 004976 499 FCKIGMLNIAKGIFSKMRVSGNDPTLFDY----------NALMASLCKESSLEQAKRLFIEIRNANCEPDV-----VSFN 563 (721)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~ 563 (721)
|.+.|+.+.-.++++.+.. ++..++ ..-+-....++++.+|...+.+-++..-.-|. -.+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 6676666555555554421 111111 11111223567777777777666652101111 1222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 004976 564 TMINGTLKAGDLQSARELYNNM 585 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~ 585 (721)
.+.......|+..++.+...-.
T Consensus 490 LLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHhcchHHHHhccchH
Confidence 3344445566666665555443
No 416
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.68 E-value=2.1e+02 Score=30.12 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=28.7
Q ss_pred hcCChhHHHHHHHHHHhCCC-----------CCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 79 RSKNYEYAFSVYSKMTCVHI-----------FPSFLSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
....|++|.+.|.-++.... |-...++..+...+..+|+.+-|..+.++.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34567788888877776532 222234445555566666666655555444
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.55 E-value=84 Score=25.58 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 612 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
++.++|+.|...|+ ...+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77778887777644 445667777777788888888888877654
No 418
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.23 E-value=1.7e+02 Score=34.09 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=27.9
Q ss_pred CCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 45 NSQYAEAVS------LFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKM 93 (721)
Q Consensus 45 ~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 93 (721)
.+.+.+|.+ ++++....--+.....|..+...+.+.|+.++|+.+-.++
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 344454544 5554443332335566666777777777777777665444
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.92 E-value=14 Score=33.02 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=43.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
+..+.++.+.|.+++.++...- +....+|..++....+.|+++.|.+.|++.++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456788888888888888742 4456788888888888888888888888888764
No 420
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.79 E-value=24 Score=25.49 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHcCCCHHHHHHHH
Q 004976 536 KESSLEQAKRLFIEIRNANCEPD-V-VSFNTMINGTLKAGDLQSARELY 582 (721)
Q Consensus 536 ~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~ 582 (721)
...+.++|+..|.++++....+. . .++..++.+|...|++.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766432221 1 24555666677777776665543
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.36 E-value=59 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 004976 626 KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 626 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 662 (721)
.|++.+|..++.++...|+.++|.++..++.. +.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 56777777777777777777777777777766 555
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.13 E-value=1.5e+02 Score=27.84 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 004976 461 IGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK---- 536 (721)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 536 (721)
|.+++..+++.+++...-+.-+..-+..+.+...-+-.|.+.|.+..+.++-..-+....+-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566667777766654444333222234455555566677777777777766666554223334446555555543
Q ss_pred -cCCHHHHHHHH
Q 004976 537 -ESSLEQAKRLF 547 (721)
Q Consensus 537 -~~~~~~A~~~~ 547 (721)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777776665
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.05 E-value=1.9e+02 Score=28.87 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCV--HIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILK 130 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 130 (721)
..+.-++..|...|+++.|++.|.++... ........|..++.+..-.|++.....+..++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34556778888889999999998885432 1122334566777777788888877777776643
No 424
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.31 E-value=1.6e+02 Score=27.72 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-------HHHHHHHHhcCCHHHHHHHH
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSY-------NTIVNGLCKAKRFKEALDIL 195 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~ 195 (721)
.+++-..+.+++++|+..+.+++..|+..+..+. ..+...|...|++....+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3455556777788888888888777766655433 23445555666655444443
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.18 E-value=1.7e+02 Score=28.13 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCcCHH
Q 004976 64 LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-HIFPSFLSLSGLIEVFVQTQKPKFALGVIGLIL----KRGFVVNIY 138 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 138 (721)
..+...++.|... .....++--+..+++.+. |-..-..++...+.-|++.|+-+.|.+.+..-. ..|..-|+.
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 3455666665542 222333333444444433 212234567777888888888888877766543 445454543
Q ss_pred hHH-HHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 139 AFN-LILKGFCRKGEVNKAIELFGEIKSNGVS----PDNCSYNTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 139 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
.+. .++-.|....-+.+-++..+.+.+.|-. .--.+|..+- +....++.+|-.+|-.....
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 332 2233333333344444555555554421 1122343332 33457788888888766543
No 426
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.36 E-value=82 Score=24.15 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=6.7
Q ss_pred HHHhcCChhHHHHHH
Q 004976 111 VFVQTQKPKFALGVI 125 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~ 125 (721)
.+...|+|++|..+.
T Consensus 48 SLmNrG~Yq~Al~l~ 62 (115)
T TIGR02508 48 SLMNRGDYQSALQLG 62 (115)
T ss_pred HHHccchHHHHHHhc
Confidence 344444444444443
No 427
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.14 E-value=2.1e+02 Score=28.67 Aligned_cols=127 Identities=11% Similarity=-0.011 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhH---
Q 004976 64 LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAF--- 140 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--- 140 (721)
+-..+++..+..++.++|+.+.|.++.++++-.- ..++......+........++- ......|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~rL------~~~~~eNR~fflal 106 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCRL------DYRRPENRQFFLAL 106 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcccc------CCccccchHHHHHH
Confidence 3356777778888888888888888888776320 1111111111000000000000 00011233333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC-KAKRFKEALDILPDMEA 200 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 200 (721)
...+..+.+.|-+.-|.++.+-+...+...|+.....+|..|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3345677788888888888888888764436666666666554 66777767777666544
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=1.9e+02 Score=27.93 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=7.8
Q ss_pred cCChhHHHHHHHHHH
Q 004976 432 EDRLDEAVKIYHTMA 446 (721)
Q Consensus 432 ~~~~~~A~~~~~~~~ 446 (721)
..++.+|-.+|-+..
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 345555555554443
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.07 E-value=1.5e+02 Score=29.85 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 004976 496 IDGFCKIGMLNIAKGIFSKMRVSGNDPTLF--DYNALMASLCK--ESSLEQAKRLFIEIRNA 553 (721)
Q Consensus 496 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~A~~~~~~~~~~ 553 (721)
+..+...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33456888999999999998876 444443 44555555543 67888999998887763
No 430
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.78 E-value=3e+02 Score=30.18 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFV-VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFK 189 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 189 (721)
+.+.+.+++|+...+.....-.. .-..+...++..+...|++++|-...-.|... +...|-..+..+...++..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 44555666666555544221110 02234555566666666666666666666643 4555555555555555443
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.96 E-value=1.8e+02 Score=27.36 Aligned_cols=95 Identities=23% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHHH-HHHHHHhcCCHhHHHHHHHHHHHC----CCCCCHHHHHH
Q 004976 317 CLIEGLCKGGRATKAIDLLNWMV----KKGEKLSVITYNV-LIKGLCQKGLVGEAYEILNMMIEK----GMMPDVVSYNT 387 (721)
Q Consensus 317 ~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 387 (721)
.++..+.+.|.+.+|+.+...+. +...+++..+... --..|....+..++..-+..+... -.+|....-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 45666677777777776655443 2233333222211 122333334444443333333221 12333222223
Q ss_pred HHHH--HhccCCHHHHHHHHHHHHhc
Q 004976 388 LLMG--IGKFGKVDEALELFNLVLKE 411 (721)
Q Consensus 388 l~~~--~~~~~~~~~A~~~~~~~~~~ 411 (721)
++.+ .+.-.++..|..+|-++.+.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhc
Confidence 3332 23445667777777766653
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.85 E-value=27 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004976 177 TIVNGLCKAKRFKEALDILPDME 199 (721)
Q Consensus 177 ~l~~~~~~~g~~~~a~~~~~~~~ 199 (721)
.++.+|...|++++|.+++.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555554444443
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.62 E-value=3.5e+02 Score=30.62 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCcCHHhHHH--
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHI---FPSFLSLSGLIEVFVQTQKP--KFALGVIGLILKRGFVVNIYAFNL-- 142 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~-- 142 (721)
|..|+..|...|+.++|++++.+...... ......+..++.-+...+.. +...++-.+.++.++.....++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 77889999999999999999999876421 11122344455555555555 556666666654443322222221
Q ss_pred ----------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 143 ----------ILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC 183 (721)
Q Consensus 143 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (721)
.+-.|......+-++..++.+....-.++....+.++..|.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12234455555666666666654432334445555555554
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.57 E-value=29 Score=23.86 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=7.0
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 004976 601 IHRFLRFGLLSDAKSVYQK 619 (721)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~ 619 (721)
+.++...|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333334444444433333
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.39 E-value=1.7e+02 Score=29.47 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HcCCCHHHHHHHHHHHHhC
Q 004976 531 MASLCKESSLEQAKRLFIEIRNANCEPDVV--SFNTMINGT--LKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 531 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 588 (721)
+..+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456789999999999999986 445444 455565655 4578899999999988774
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.30 E-value=36 Score=20.25 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCChhHHHHH
Q 004976 632 YDSLLKGFSSQGETEEVFDL 651 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~ 651 (721)
+..++-.+...|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44555556666666666666
No 437
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.92 E-value=31 Score=32.40 Aligned_cols=58 Identities=9% Similarity=-0.131 Sum_probs=46.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004976 76 ALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV 134 (721)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 134 (721)
-..+.|+.++|..+|+.++... |.++..+..++...-..++.-+|-++|-+++..++.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3456788888999998888875 777888888888888888888888888888776544
No 438
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=1.9e+02 Score=26.98 Aligned_cols=120 Identities=7% Similarity=-0.028 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHH
Q 004976 467 AGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCK-IGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLE-QAK 544 (721)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~ 544 (721)
...-+.|+++.+..+..++. +-..|..--..+.. ..+..+-++.+.++.+..+ .+-.+|..--......|++. .-+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccchH
Confidence 34445555555555554432 33333222211111 1224444455555544422 23333332222223334444 444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 004976 545 RLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG 589 (721)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 589 (721)
++.+.|+..+ ..+-.+|..--+++..-+.++.-+.+..++++.+
T Consensus 134 ef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 134 EFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4445554422 1233445444555555555555555555555554
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.60 E-value=2.6e+02 Score=28.38 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----C--CCCC-----CHhhHHHHHHHHHhcCChhHHHHHHHHHH-------HCC
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTC-----V--HIFP-----SFLSLSGLIEVFVQTQKPKFALGVIGLIL-------KRG 132 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~-----~--~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~ 132 (721)
.++..+....+..+-++....... . +..| .-+++..+++.++-.|++..|+++++.+. ..-
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 345556666666665555544211 0 1111 11345677888999999999999988763 111
Q ss_pred CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 133 FVVNIYAFNLILKGFCRKGEVNKAIELFGEIK 164 (721)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 164 (721)
+...+.++..++-+|...+++.+|.+.|..++
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445678888888999999999999998876
No 440
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.43 E-value=4.1e+02 Score=30.75 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004976 557 PDVVSFNTMINGTLKAGDLQS-ARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSL 635 (721)
Q Consensus 557 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 635 (721)
++...-...+.++...+..+. +...+..+.+ .+|...-...+.++...|..+.+...+..++. .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 444444445555555444322 3344444443 34555556666666666665544444555543 3455555556
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhHhhHHHHHHh
Q 004976 636 LKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCNISEDLDVAKLFPTFSQ 692 (721)
Q Consensus 636 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 692 (721)
+.++...+. +++...+..++ -.|+..+-...+.+|.+..++......+.+.+.
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L---~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEAL---TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccc-cchHHHHHHHh---cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666666654 34555555555 345666666666666554445555555554444
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.29 E-value=1.2e+02 Score=24.58 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHH
Q 004976 611 SDAKSVYQKMVASGHK-PNACVYDSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 611 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 653 (721)
++..++|.-|...++- ..+..|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3355566666655442 233445556666666666666666654
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.02 E-value=67 Score=30.01 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVAS----GH-KPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
..++.-|...|++++|.++|+.+... |. .+...+...+..++.+.|+.++.+.+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35566667777777777777776432 11 223445556666666677777666665444
No 443
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.02 E-value=1e+02 Score=24.84 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 581 LYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
-++.+...++.|++.....-++++.+.+++..|+++++.+...
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444444456666666666666666666666666666666543
No 444
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.96 E-value=2.2e+02 Score=27.37 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 004976 382 VVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILI 461 (721)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 461 (721)
..+...++.......+++.+..++-++............+-...++.+. .-++++++.++..=++-|+-||..+...++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 3344444444445566777776666655421110001111122223222 335667777777777778888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004976 462 GKYLTAGIIDKALEMWKHLLEL 483 (721)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~ 483 (721)
..+.+.+++.+|..+.-.++..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888887777666654
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.91 E-value=39 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.624 Sum_probs=5.9
Q ss_pred HhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVA 622 (721)
Q Consensus 610 ~~~A~~~~~~~~~ 622 (721)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.62 E-value=1.9e+02 Score=26.58 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEA 191 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 191 (721)
+...++++.|.+.+.. +...+.-...++..+...|+.+.|..+++.+.-. ..+......++.. ..++.+.+|
T Consensus 88 ~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHH
Confidence 4455777777777633 2223344557888888899999999998876532 1222333333434 677899999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004976 192 LDILPDMEAVGCCPNLITYSTLMDGLC 218 (721)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~~~~l~~~~~ 218 (721)
..+-+...... ....+..++..+.
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHH
Confidence 98887766531 2445666666555
No 447
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=2.6e+02 Score=27.98 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.2
Q ss_pred CChhHHHHHHHHHH
Q 004976 81 KNYEYAFSVYSKMT 94 (721)
Q Consensus 81 ~~~~~A~~~~~~~~ 94 (721)
+++.+|..+-+..+
T Consensus 140 K~~kea~~~~~~~l 153 (493)
T KOG2581|consen 140 KEYKEADKISDALL 153 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544443
No 448
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=51.12 E-value=1.3e+02 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004976 56 QRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFP 100 (721)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 100 (721)
+..+..+.....+++..++.-++..|+++.|+.+.+-+++.+.+.
T Consensus 37 ~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 37 EGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred HHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCc
Confidence 444454444445667777777888899999999988888886433
No 449
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.00 E-value=60 Score=29.33 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVH 97 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 97 (721)
.++.+.|.++|.+++..-|. -...|..++...-+.|+++.|.+.|++.++.+
T Consensus 8 ~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 8 SGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45777788888888776544 66777777777777888888888888887765
No 450
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.91 E-value=1.9e+02 Score=33.77 Aligned_cols=50 Identities=28% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHhcCChhHHHHHHHHHhHC-----CC--CCCccchHHHHHHHHhcCChhHHHHHH
Q 004976 216 GLCKDGRVDEAMGLLEEMKAK-----GL--DADVVVYSALISGFCSNGSFDKGKKLF 265 (721)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 265 (721)
.+...++++.|.++++.+... |+ -....++..+.+.+...+++..|....
T Consensus 1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 333345555555555555432 10 113344555555555556555554433
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.33 E-value=75 Score=29.68 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----CCC-CcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 107 GLIEVFVQTQKPKFALGVIGLILK----RGF-VVNIYAFNLILKGFCRKGEVNKAIELFGE 162 (721)
Q Consensus 107 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 162 (721)
.++..+...|+++.|.++|+.+.. .|. .....+...+..++.+.|+.+..+.+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444444555555444444431 111 11223444445555566666555554433
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.96 E-value=82 Score=28.02 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 579 RELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
++..++..+ ..|++.++..++.++...|+.++|.+..+++...
T Consensus 131 ~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 131 IEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444 4677777777777788888888888777777764
No 453
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.68 E-value=2.6e+02 Score=26.96 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=11.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKS 165 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~ 165 (721)
.++.+-.+.|+..+|.+.|+.+.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344444445555555555554443
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.35 E-value=45 Score=19.26 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHH
Q 004976 575 LQSARELYNNMLQMGLPPDALTYS 598 (721)
Q Consensus 575 ~~~A~~~~~~~~~~~~~~~~~~~~ 598 (721)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444444444444 234444443
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.33 E-value=1.6e+02 Score=23.95 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 507 IAKGIFSKMRVSGNDPT-LFDYNALMASLCKESSLEQAKRLFIE 549 (721)
Q Consensus 507 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 549 (721)
.+.++|+.|...|+... ...|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666554333 34455556666666666666666654
No 456
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.24 E-value=1.5e+02 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhCCCCCCh--hhH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 153 VNKAIELFGEIKSNGVSPDN--CSY-----NTIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
++.|+.+|+.+.+.-..|+. ... -..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 55677777776654211100 111 1223457778888888888887776
No 457
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.77 E-value=29 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=23.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG 181 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (721)
...|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344666678899999999987777 57777654
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=2.3e+02 Score=31.57 Aligned_cols=34 Identities=3% Similarity=0.018 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH
Q 004976 631 VYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQ 664 (721)
Q Consensus 631 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 664 (721)
++...+..+.+.+++..|..+..++++.+-.|+.
T Consensus 1086 alrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1086 ALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3445555677777777777777777764444443
No 459
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=42.07 E-value=1.6e+02 Score=22.70 Aligned_cols=51 Identities=35% Similarity=0.425 Sum_probs=27.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
.+...|+|++|..+.+.. ..||...|..|. -.+.|...++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 345566666666655544 245555555443 245555555555555555444
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.68 E-value=59 Score=32.70 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNA------NCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
.+...|++.++-.|++..|+++++.+.-. .+++ .+.++..++-+|...+++.+|...|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888899999999998765321 1122 234677888889999999999999988875
No 461
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.62 E-value=2.8e+02 Score=27.01 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=57.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHH-HHH
Q 004976 565 MINGTLKAGDLQSARELYNNMLQM---GLPPDALTY--STLIHRFLRFGLLSDAKSVYQKMVA-----SGHKPNAC-VYD 633 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~ 633 (721)
++....+.++.++|+++++++.+. .-.|+...| ...+.++...|+..++++.+.+..+ .+++++.. .|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344455667899999999988765 224555544 4567777888999999988887766 46666444 455
Q ss_pred HHHHHHHc-CCChhHHHHHHHHHHH
Q 004976 634 SLLKGFSS-QGETEEVFDLIHEMAD 657 (721)
Q Consensus 634 ~l~~~~~~-~g~~~~A~~~~~~~~~ 657 (721)
.+..-|.+ .|++ ..+|+.++.
T Consensus 161 ~lssqYyk~~~d~---a~yYr~~L~ 182 (380)
T KOG2908|consen 161 SLSSQYYKKIGDF---ASYYRHALL 182 (380)
T ss_pred HHHHHHHHHHHhH---HHHHHHHHH
Confidence 55554443 3444 234555544
No 462
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.48 E-value=3.3e+02 Score=26.23 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=27.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC-CCC-----ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 565 MINGTLKAGDLQSARELYNNMLQMG-LPP-----DALTYSTLIHRFLRFGLLSDAKSVYQKM 620 (721)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (721)
|+..|.+.+++..|.+.+.-+...+ ... -..++-.+++.|...++..+|..+..+.
T Consensus 109 LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 109 LASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4455556666666655554443321 000 0123344555566666666665555554
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.30 E-value=81 Score=29.82 Aligned_cols=55 Identities=11% Similarity=-0.092 Sum_probs=44.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNG 167 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 167 (721)
..+.|+.++|..+|+.++... +.++.+...+.......++.-+|-+++-+++...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 447789999999999998875 4478888888888777888888888888887653
No 464
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.27 E-value=3.2e+02 Score=25.92 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 347 VITYNVLIKGLCQKGLVGEAYEILNMMI 374 (721)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 374 (721)
..++..++..|++.++.+.+.+..++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455555666666666555555554443
No 465
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.70 E-value=55 Score=23.57 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=10.6
Q ss_pred cCCChhHHHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMAD 657 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~ 657 (721)
..|++++|+++|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 44666666666666654
No 466
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.48 E-value=1.9e+02 Score=23.15 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC---------hhhHHHHHHHHHhcCCHhHHHHHHHHHH-------HCCCCCCHHHHHH
Q 004976 573 GDLQSARELYNNMLQM--GLPPD---------ALTYSTLIHRFLRFGLLSDAKSVYQKMV-------ASGHKPNACVYDS 634 (721)
Q Consensus 573 g~~~~A~~~~~~~~~~--~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 634 (721)
|-+++|..-+.++.+. .+||. ..++..|..++...|++++++...+.++ +.. +.....|..
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-QDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-cccchhHHH
Q ss_pred HHHH----HHcCCChhHHHHHHHHHHH
Q 004976 635 LLKG----FSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 635 l~~~----~~~~g~~~~A~~~~~~~~~ 657 (721)
.+-. +...|+.++|+..|+...+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.20 E-value=5.8e+02 Score=28.68 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=75.7
Q ss_pred HHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 004976 217 LCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEA 296 (721)
Q Consensus 217 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 296 (721)
+...|+.+.|++.-.++ + +..+|..|+......|+.+-|+..|++... |..+--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl---d---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL---D---DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc---C---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34567777766554332 1 666788888888888888888888877653 23333445667888877
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 297 IAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK 376 (721)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (721)
.++......+ -|..+.. ....-.|+.++-.++++.. |.. +..|.. ....|.-++|.++.++....
T Consensus 718 ~Km~~iae~r---~D~~~~~---qnalYl~dv~ervkIl~n~---g~~--~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATGQF---QNALYLGDVKERVKILENG---GQL--PLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhh---hhhHHHH---HHHHHhccHHHHHHHHHhc---Ccc--cHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 7666655443 1322211 1122356777766666543 221 122221 23467777888888777653
No 468
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=39.79 E-value=1.9e+02 Score=22.86 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=14.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004976 532 ASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 532 ~~~~~~~~~~~A~~~~~~~~~ 552 (721)
..+...|+.-+|+++.+++..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 445667777777777776665
No 469
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.61 E-value=3.2e+02 Score=25.46 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHH-----HHHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLL-----KGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+.+.+. .++|...+...++ -.|...++.++|.++.+++.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788877653 3566655444333 235567999999988877654
No 470
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.86 E-value=94 Score=29.52 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=27.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 523 TLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNT-MINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 523 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
|+..|...+....+.|.+.+.-.+|.++.+.+ +.|+..|.. ...-+...++++.+..+|.+.++.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34444444443344445555555555555433 122333322 111233445555555555555543
No 471
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.67 E-value=66 Score=30.58 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGL 108 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 108 (721)
+-..|+..+....+.||+++|+++.+++.+.|...-..++...
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3455668899999999999999999999988865555555443
No 472
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=5.2e+02 Score=27.44 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=27.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004976 38 RLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSK 92 (721)
Q Consensus 38 ~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 92 (721)
+++...+.++...+...++..+..++. ....+..++.+.-..|....+...+..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444555555555555555555433 445555555555555544444444444
No 473
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.34 E-value=77 Score=19.20 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTC 95 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 95 (721)
++|..++.+-...++|++|..=|..++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566666666667777777666666554
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.05 E-value=3.8e+02 Score=26.30 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 294 KEAIAMLDAMMERGIRPD----VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL 357 (721)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (721)
++.+.++..+++. -|+ ..-|..++......|.++.++.+|++++..|..|-......++.++
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4555566655553 234 2335555666666666666666666666666666555555555443
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.96 E-value=2.9e+02 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=13.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 004976 567 NGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~ 587 (721)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 456666677777776666665
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.60 E-value=4.1e+02 Score=25.90 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------cCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHhH
Q 004976 540 LEQAKRLFIEIRNANCEPDVVSFNTMINGTL------KAGDLQSARELYNNMLQMGLPPDAL-TYSTLIHRFLRFGLLSD 612 (721)
Q Consensus 540 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 612 (721)
++++..++++....+. |........+.++. ..-++.....+|+-+... .|++. +.|.- -+..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHH-HHHHHhhhHHh
Confidence 3455555555554432 44444333333221 122455555666666553 34432 33322 23333333555
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 613 AKSVYQKMVASG-HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTI 670 (721)
Q Consensus 613 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (721)
++...+.+.+.+ +..-...+..-+..+.+.|+.++|...|++++. +.++...-..+
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~aer~~l 404 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAAERAFL 404 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChHHHHHH
Confidence 555555555432 111111223334446667777777777777766 55554444333
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.29 E-value=2e+02 Score=21.53 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhH
Q 004976 367 YEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDE 437 (721)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 437 (721)
.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. . .+..+..++.++...|.-+-
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r------g~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q------KEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c------CCcHHHHHHHHHHHcCchhh
Confidence 3445555555432 22233333322234456666666666554 1 23345555555555554333
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.37 E-value=2.6e+02 Score=22.70 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHH
Q 004976 576 QSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQK 619 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (721)
++..++|..|...++-... ..|...+..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4467788888887665554 4566777778888888888888763
No 479
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.05 E-value=4.7e+02 Score=25.52 Aligned_cols=115 Identities=16% Similarity=0.274 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-h-----cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHH
Q 004976 505 LNIAKGIFSKMRVSGNDPTLFDYNALMASLC-K-----ESSLEQAKRLFIEIRNANCEPDVV-SFNTMINGTLKAGDLQS 577 (721)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 577 (721)
.+++..++++...++. |.+......+.++- . .-++.....+|+.+.... |+++ +.|..+ +..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhHHh
Confidence 4555666666655543 45444444433322 1 235666666677666643 4443 333333 2333334666
Q ss_pred HHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 578 ARELYNNMLQMG-LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 578 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
++.+.+.+...+ +.--...+..-+..+.+.|+.++|...|++++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 777777666642 1111223344566677888888888888888875
No 480
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.04 E-value=7e+02 Score=27.47 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhccCCH
Q 004976 332 IDLLNWMVKKGEK---LSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVS----------YNTLLMGIGKFGKV 398 (721)
Q Consensus 332 ~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~ 398 (721)
-.++.+|..+-.. ....+...++-.|....+++..+++.+.+... ||..- |...+.--.+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3455555554222 23445556666677777777777777777654 32211 12222223345677
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHH-----H--HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004976 399 DEALELFNLVLKEEKYVQLDVVTYNN-----L--IQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIG 462 (721)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~~~~~~~-----l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (721)
++|+...-.+++....+.||...+.. + ...|...+..+.|.++|++.-+. .|+..+-..+..
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~at 328 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLAT 328 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHH
Confidence 77777777777665555666433211 1 11223344566777777777664 455443333333
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.78 E-value=2.1e+02 Score=24.04 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004976 283 LMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGG 326 (721)
Q Consensus 283 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (721)
++..+...++.-.|.++++.+.+.+...+..|.+..+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444444555555555555444444444444444444333
No 482
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.40 E-value=2.2e+02 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHHH
Q 004976 291 GQWKEAIAMLDAM 303 (721)
Q Consensus 291 g~~~~A~~~~~~~ 303 (721)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 483
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.14 E-value=4e+02 Score=24.36 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCCHhHHHHHHHHHH
Q 004976 566 INGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIH----RFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 621 (721)
+......|+.++|++..+.+-..-+..|...+..+.. =..+.|..++|+++.+.-+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 3444556666666666555543322233222221111 1235555666666555543
No 484
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.03 E-value=6.8e+02 Score=27.06 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKM 93 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 93 (721)
+...|. .+..+.-+|.+++|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 356676 577778889999999998544
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.60 E-value=9.1e+02 Score=28.35 Aligned_cols=83 Identities=6% Similarity=-0.046 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 105 LSGLIEVFVQTQKPKFALGVIGLILKRGFVVNI---YAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG 181 (721)
Q Consensus 105 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (721)
|...++.+-+.+-.+.+.++-..+++.-++.++ ..++.+.+.....|.+.+|.+.+-+-... .........++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHH
Confidence 556777788888888888888888765333332 35666777777777777776554322211 1112245566667
Q ss_pred HHhcCCHH
Q 004976 182 LCKAKRFK 189 (721)
Q Consensus 182 ~~~~g~~~ 189 (721)
++..|.++
T Consensus 1064 Lfecg~l~ 1071 (1480)
T KOG4521|consen 1064 LFECGELE 1071 (1480)
T ss_pred HHhccchH
Confidence 77777654
No 486
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.20 E-value=1.5e+02 Score=19.09 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=17.6
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 640 SSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 640 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
.+.|-..++...+++|.+.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555566665555555555555444
No 487
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.13 E-value=1.2e+02 Score=28.84 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 599 TLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
.-|..-.+.||+++|+.+++++.+.|
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444
No 488
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.95 E-value=9e+02 Score=28.10 Aligned_cols=247 Identities=10% Similarity=-0.014 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHH
Q 004976 345 LSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNN 424 (721)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 424 (721)
+++.+....+..+.+.+. +++...+..+++. ++...-...+.++.+.+........+...+. . ++..+-..
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--~---~d~~VR~~ 703 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG--S---PDPVVRAA 703 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc--C---CCHHHHHH
Confidence 355555555666655554 3344444455432 3444433444444333221111223333332 1 34455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004976 425 LIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM 504 (721)
Q Consensus 425 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 504 (721)
.+.++...+..+ .. .+-.+.. .+++..-...+.++...+..+. +..+.. .++...-...+.++...+.
T Consensus 704 A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 704 ALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcc
Confidence 555555433211 11 2222222 3455555555666655544322 222222 3466666666777776665
Q ss_pred HHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004976 505 LNI-AKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYN 583 (721)
Q Consensus 505 ~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 583 (721)
.+. +...+..+.. +++..+-...+.++.+.|....+...+..+++ .++...-...+.++...+. +++...+.
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 432 3444444443 34666667777777777776555444555554 2455555556666666664 45666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 584 NMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
.+++ .|+..+-...+.++.+...-..+...+..+++
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6664 46666666666666665334567777777766
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.63 E-value=1.8e+02 Score=27.80 Aligned_cols=81 Identities=7% Similarity=-0.015 Sum_probs=50.5
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 004976 98 IFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNL-ILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYN 176 (721)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+.++..|...+.-..+.|.+.+.-.++.++++.. |.|++.|-. -..-+...++++.++.+|...+..+ +.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 35666666666666666667777777777777663 446655543 3344556677777777777777664 44555555
Q ss_pred HHHH
Q 004976 177 TIVN 180 (721)
Q Consensus 177 ~l~~ 180 (721)
...+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5443
No 490
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.01 E-value=1.4e+02 Score=21.80 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.6
Q ss_pred HhHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMV 621 (721)
Q Consensus 610 ~~~A~~~~~~~~ 621 (721)
|+.|.++-++|.
T Consensus 55 w~~ar~~~~Km~ 66 (79)
T cd02679 55 WERARRLQQKMK 66 (79)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 491
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=29.96 E-value=6e+02 Score=25.76 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 004976 554 NCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG 589 (721)
Q Consensus 554 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 589 (721)
.+.||..+.+.+...+...-..+-...+|+-..+.+
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 355666666666666655555666666666666543
No 492
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.30 E-value=2.4e+02 Score=20.92 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=9.1
Q ss_pred CCHhHHHHHHHHHHHCC
Q 004976 608 GLLSDAKSVYQKMVASG 624 (721)
Q Consensus 608 g~~~~A~~~~~~~~~~~ 624 (721)
++++++...+.+++..|
T Consensus 18 ~~~~~~~~~~~~l~~~G 34 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEG 34 (89)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 35555555555555544
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.13 E-value=3.9e+02 Score=26.23 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004976 421 TYNNLIQGLCKEDRLDEAVKIYHTMAERGISGN 453 (721)
Q Consensus 421 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 453 (721)
.|..++......|.++..+.+|+.++..|..|-
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPi 174 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPI 174 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChH
Confidence 344444444445555555555555555544443
No 494
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.02 E-value=2.9e+02 Score=21.75 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 37 LRLLFEKPN-SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTC 95 (721)
Q Consensus 37 l~~l~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 95 (721)
+..+++.+| .+.++..+.+.+. .. |..++..|..+|..++|++++.+...
T Consensus 17 l~~llr~~N~C~~~~~e~~L~~~----~~-----~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 17 LGPLLRLPNYCDLEEVEEVLKEH----GK-----YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHccCCcCCHHHHHHHHHHc----CC-----HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344444333 3666665555432 22 88899999999999999999988876
No 495
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.79 E-value=2.3e+02 Score=20.58 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=8.3
Q ss_pred cCCChhHHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMA 656 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~ 656 (721)
+.|++++|+.+|.+.+
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555555443
No 496
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=2.7e+02 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
..|+-.|.+.|+-+.|.+-|+.-..
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3444455555555555555554433
No 497
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.24 E-value=3.6e+02 Score=24.08 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGL 127 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 127 (721)
.....++..+.-+|||+.|-++|.-+++.....-...|..-+..+.+.+......+.++.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~ 101 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEW 101 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHH
Confidence 345566777777888888888888887764222223455555666555555444433333
No 498
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.04 E-value=42 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 638 GFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
.+...|...+|..+|++|++.|-+||+ |..|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 355668888999999999999888864 4455443
No 499
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.62 E-value=5.5e+02 Score=24.56 Aligned_cols=170 Identities=15% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHh-cCChhHHHHHHH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTC-VHIFPSFLSLSGLIEVFVQ-TQKPKFALGVIG 126 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 126 (721)
++-+.+++-.+..-......-|..+. -+.....+|+++|+..-- ..+-.+......+++.... .+.--.|.--+-
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHHCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----H
Q 004976 127 LILKRG--FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN-GVSPDNCSYNTIVNGLCKAKRFKEALDILPD-----M 198 (721)
Q Consensus 127 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~ 198 (721)
..+... ..++..+...++..++..+++..-.+.++..... +...|...|..+++.-.+.|+..-..++..+ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC
Q 004976 199 EAVGCCPNLITYSTLMDGLCKDG 221 (721)
Q Consensus 199 ~~~~~~p~~~~~~~l~~~~~~~~ 221 (721)
...+++-+...-..+-..+-+.|
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHhcC
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=27.42 E-value=5.8e+02 Score=24.75 Aligned_cols=190 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCcccccCCCccCCCCCCcchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004976 1 MVTKAAFNPCRSFPERILRLPVKCFSSVPQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRS 80 (721)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (721)
+.|-..|.+....| .....-..-...|..+.-..+..++. ++++.+.++..+..+..++- =.+.......++.+.
T Consensus 72 L~R~a~W~~I~~lP--~~~~~g~T~L~~p~ad~~~~~~~~~~--~~~~~~Ll~~~E~sl~~~pf-WLDgq~~~~qal~~l 146 (301)
T TIGR03362 72 LRRTALWGTITALP--MSNADGRTRLAPPPADRVADYQELLA--QADWAALLQRVEQSLSLAPF-WLDGQRLSAQALERL 146 (301)
T ss_pred HHHHHhhhhhccCC--CCCCCCCccCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHC
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---------------cCHHhHHHHHH
Q 004976 81 KNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV---------------VNIYAFNLILK 145 (721)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~l~~ 145 (721)
| ++.+......-++.- ..-+-.+.......|..=--......+...... .+......-+.
T Consensus 147 G-~~~~a~aI~~el~~f----L~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 221 (301)
T TIGR03362 147 G-YAAVAQAIRDELAAF----LERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEAR 221 (301)
T ss_pred C-CHHHHHHHHHHHHHH----HHhCcChhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHH
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG--LCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 200 (721)
.+...|.++.|+..++........+-...+..|..+ +...|..+-|..++..+..
T Consensus 222 ~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 222 ALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Done!