Query 004976
Match_columns 721
No_of_seqs 726 out of 4047
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 11:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-40 4.4E-45 360.4 41.0 522 112-674 63-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.1E-40 1.1E-44 357.3 40.7 524 77-640 63-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-29 2.6E-33 252.1 47.8 229 423-657 139-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-29 2E-33 253.0 46.7 379 74-465 6-384 (388)
5 2gw1_A Mitochondrial precursor 100.0 7.6E-26 2.6E-30 239.8 40.6 461 172-671 6-489 (514)
6 2gw1_A Mitochondrial precursor 100.0 9.2E-26 3.2E-30 239.2 40.2 461 136-635 5-489 (514)
7 2y4t_A DNAJ homolog subfamily 99.9 1.1E-24 3.8E-29 226.4 39.7 330 49-389 9-370 (450)
8 3fp2_A TPR repeat-containing p 99.9 1.3E-24 4.5E-29 231.6 36.8 265 396-668 216-499 (537)
9 3fp2_A TPR repeat-containing p 99.9 3.6E-24 1.2E-28 228.2 38.1 434 66-518 24-491 (537)
10 4g26_A Pentatricopeptide repea 99.9 1.4E-25 4.6E-30 230.6 23.2 199 126-324 14-222 (501)
11 2y4t_A DNAJ homolog subfamily 99.9 5.1E-23 1.7E-27 213.9 41.2 314 241-587 25-357 (450)
12 4g26_A Pentatricopeptide repea 99.9 3.2E-25 1.1E-29 227.8 23.3 205 155-359 8-222 (501)
13 3ieg_A DNAJ homolog subfamily 99.9 8.8E-21 3E-25 190.5 40.8 330 312-673 3-348 (359)
14 2xm6_A Protein corresponding t 99.9 1.6E-19 5.4E-24 188.9 50.2 352 241-624 38-433 (490)
15 2xm6_A Protein corresponding t 99.9 1.7E-19 5.7E-24 188.7 49.3 366 49-449 24-433 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 1.5E-20 5.1E-25 188.8 38.5 331 276-641 2-352 (359)
17 1xi4_A Clathrin heavy chain; a 99.9 1.4E-17 4.8E-22 180.7 60.8 402 48-509 966-1375(1630)
18 1xi4_A Clathrin heavy chain; a 99.9 2.9E-17 9.9E-22 178.2 62.8 410 100-573 983-1415(1630)
19 3hym_B Cell division cycle pro 99.9 3E-20 1E-24 184.2 32.1 293 381-683 21-323 (330)
20 3hym_B Cell division cycle pro 99.9 3.3E-20 1.1E-24 183.9 32.3 285 66-357 21-314 (330)
21 2ooe_A Cleavage stimulation fa 99.9 1.3E-18 4.5E-23 183.9 45.4 427 55-518 2-492 (530)
22 2ooe_A Cleavage stimulation fa 99.9 5.9E-19 2E-23 186.6 41.6 430 195-657 2-491 (530)
23 1fch_A Peroxisomal targeting s 99.9 8.5E-20 2.9E-24 184.0 24.7 263 105-373 67-356 (368)
24 4g1t_A Interferon-induced prot 99.9 5.5E-18 1.9E-22 177.0 39.2 388 63-485 47-461 (472)
25 4g1t_A Interferon-induced prot 99.9 3.2E-18 1.1E-22 178.8 37.4 382 241-657 50-458 (472)
26 1fch_A Peroxisomal targeting s 99.8 5.7E-19 2E-23 177.9 26.8 283 395-685 38-351 (368)
27 4eqf_A PEX5-related protein; a 99.8 6.1E-19 2.1E-23 177.3 23.6 234 66-305 64-309 (365)
28 4eqf_A PEX5-related protein; a 99.8 2.2E-18 7.4E-23 173.3 25.7 235 418-657 64-309 (365)
29 1b89_A Protein (clathrin heavy 99.8 3.1E-19 1E-23 173.8 17.0 282 44-369 15-304 (449)
30 3cv0_A Peroxisome targeting si 99.8 2E-18 6.8E-23 170.7 23.4 232 68-305 22-268 (327)
31 3cv0_A Peroxisome targeting si 99.8 6.3E-18 2.2E-22 167.1 25.4 278 349-657 23-314 (327)
32 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 161.6 24.4 241 78-360 14-254 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 6.6E-17 2.3E-21 155.1 26.9 257 393-669 10-273 (291)
34 3e4b_A ALGK; tetratricopeptide 99.8 4.9E-17 1.7E-21 166.9 26.9 219 421-656 178-419 (452)
35 3mkr_A Coatomer subunit epsilo 99.8 5.6E-17 1.9E-21 155.6 25.4 251 76-341 8-264 (291)
36 3e4b_A ALGK; tetratricopeptide 99.8 5.6E-17 1.9E-21 166.5 27.0 347 72-449 8-388 (452)
37 3uq3_A Heat shock protein STI1 99.8 1.8E-16 6E-21 150.6 25.7 238 419-672 5-254 (258)
38 2pl2_A Hypothetical conserved 99.8 1.6E-16 5.6E-21 145.5 22.5 200 451-656 2-212 (217)
39 2pl2_A Hypothetical conserved 99.7 1.1E-16 3.6E-21 146.8 20.7 198 65-268 3-211 (217)
40 3u4t_A TPR repeat-containing p 99.7 7.7E-16 2.6E-20 147.5 25.0 249 420-674 4-264 (272)
41 2h6f_A Protein farnesyltransfe 99.7 5.1E-16 1.7E-20 153.9 23.7 218 44-268 109-344 (382)
42 3uq3_A Heat shock protein STI1 99.7 1.1E-15 3.7E-20 145.1 24.3 226 67-306 5-236 (258)
43 2h6f_A Protein farnesyltransfe 99.7 1.3E-15 4.6E-20 150.9 25.3 248 419-675 97-364 (382)
44 3u4t_A TPR repeat-containing p 99.7 2E-15 6.8E-20 144.6 24.5 235 68-306 4-250 (272)
45 1ouv_A Conserved hypothetical 99.7 3.8E-14 1.3E-18 135.5 32.3 223 418-658 5-251 (273)
46 4e6h_A MRNA 3'-END-processing 99.7 2.7E-13 9.3E-18 143.3 41.0 456 189-673 49-583 (679)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.8E-16 3.4E-20 147.0 20.5 247 44-300 17-269 (275)
48 4e6h_A MRNA 3'-END-processing 99.7 1.1E-12 3.8E-17 138.6 45.1 454 49-554 49-571 (679)
49 1ouv_A Conserved hypothetical 99.7 3E-14 1E-18 136.3 30.3 223 66-306 5-251 (273)
50 2q7f_A YRRB protein; TPR, prot 99.7 2.5E-15 8.5E-20 141.2 20.6 213 454-673 23-235 (243)
51 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.5E-19 136.4 25.5 209 455-669 38-247 (252)
52 2vq2_A PILW, putative fimbrial 99.7 3E-14 1E-18 131.9 26.3 214 452-671 6-222 (225)
53 2q7f_A YRRB protein; TPR, prot 99.7 8.2E-15 2.8E-19 137.6 21.3 218 417-640 21-238 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.9E-15 2E-19 141.5 20.7 245 396-652 19-269 (275)
55 2ho1_A Type 4 fimbrial biogene 99.7 4.4E-14 1.5E-18 133.4 25.5 201 67-271 37-238 (252)
56 2vq2_A PILW, putative fimbrial 99.6 8.3E-14 2.8E-18 128.9 24.6 203 66-271 7-211 (225)
57 3vtx_A MAMA; tetratricopeptide 99.6 6.6E-14 2.3E-18 124.8 22.4 172 488-665 4-175 (184)
58 3sf4_A G-protein-signaling mod 99.6 9.9E-15 3.4E-19 149.0 18.6 274 65-339 7-334 (406)
59 2ond_A Cleavage stimulation fa 99.6 2.2E-13 7.7E-18 132.4 26.5 219 49-271 33-270 (308)
60 4a1s_A PINS, partner of inscut 99.6 2.4E-14 8.1E-19 146.4 20.0 203 455-657 127-371 (411)
61 4a1s_A PINS, partner of inscut 99.6 2.1E-14 7.3E-19 146.7 18.7 237 67-304 48-330 (411)
62 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-13 6.2E-18 121.9 21.5 167 66-236 4-170 (184)
63 3sf4_A G-protein-signaling mod 99.6 2E-14 6.8E-19 146.7 17.1 226 421-646 89-364 (406)
64 3ulq_A Response regulator aspa 99.6 1.8E-13 6.3E-18 138.0 23.6 231 425-657 109-367 (383)
65 4abn_A Tetratricopeptide repea 99.6 4.6E-14 1.6E-18 145.8 19.0 216 82-303 83-318 (474)
66 2ond_A Cleavage stimulation fa 99.6 1.1E-12 3.6E-17 127.6 27.5 218 84-306 33-270 (308)
67 4abn_A Tetratricopeptide repea 99.6 6.4E-14 2.2E-18 144.7 19.4 214 435-655 84-318 (474)
68 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.8E-18 137.1 19.6 202 456-657 85-331 (338)
69 3ro2_A PINS homolog, G-protein 99.6 5.8E-14 2E-18 139.1 17.2 277 68-376 6-332 (338)
70 3ulq_A Response regulator aspa 99.5 9.8E-13 3.3E-17 132.7 24.0 233 388-623 109-368 (383)
71 4i17_A Hypothetical protein; T 99.5 1.5E-12 5.2E-17 120.5 21.1 210 451-674 4-223 (228)
72 3spa_A Mtrpol, DNA-directed RN 99.5 2.3E-14 8E-19 151.1 8.3 118 136-253 126-247 (1134)
73 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.7E-18 134.7 13.5 238 419-657 27-306 (311)
74 3spa_A Mtrpol, DNA-directed RN 99.5 3E-14 1E-18 150.3 9.0 153 99-256 124-286 (1134)
75 3q15_A PSP28, response regulat 99.5 3.7E-12 1.3E-16 128.1 23.0 232 423-657 105-364 (378)
76 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.3E-18 132.9 12.7 170 66-235 26-223 (311)
77 3q15_A PSP28, response regulat 99.5 1E-11 3.5E-16 124.8 24.5 232 387-622 106-364 (378)
78 4i17_A Hypothetical protein; T 99.5 1.2E-11 4E-16 114.5 22.3 209 417-638 5-223 (228)
79 4gyw_A UDP-N-acetylglucosamine 99.4 5E-12 1.7E-16 135.5 21.3 165 489-657 9-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.4 3.9E-12 1.3E-16 136.4 20.1 166 66-235 8-173 (723)
81 1hz4_A MALT regulatory protein 99.4 6.9E-11 2.4E-15 118.7 27.2 269 354-622 21-321 (373)
82 1hz4_A MALT regulatory protein 99.4 6.9E-11 2.3E-15 118.7 27.0 269 71-339 18-320 (373)
83 3as5_A MAMA; tetratricopeptide 99.4 1E-11 3.5E-16 110.7 18.1 164 490-657 9-172 (186)
84 3dra_A Protein farnesyltransfe 99.4 1.6E-10 5.6E-15 109.4 26.4 261 4-270 5-286 (306)
85 3as5_A MAMA; tetratricopeptide 99.4 2.1E-11 7.3E-16 108.5 19.1 167 66-236 7-173 (186)
86 3edt_B KLC 2, kinesin light ch 99.3 8.8E-12 3E-16 119.8 13.3 156 45-200 14-197 (283)
87 1qqe_A Vesicular transport pro 99.3 4.3E-11 1.5E-15 115.1 17.7 130 174-305 119-268 (292)
88 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8.3E-16 116.6 15.8 228 429-657 11-280 (283)
89 1qqe_A Vesicular transport pro 99.3 5.7E-11 1.9E-15 114.2 17.0 198 463-664 46-273 (292)
90 3qky_A Outer membrane assembly 99.3 1.4E-10 4.7E-15 109.8 18.2 209 65-295 13-250 (261)
91 3qky_A Outer membrane assembly 99.3 1.9E-10 6.5E-15 108.8 19.1 191 451-665 12-229 (261)
92 4ga2_A E3 SUMO-protein ligase 99.3 2.5E-11 8.4E-16 103.2 11.2 141 43-187 8-149 (150)
93 2pzi_A Probable serine/threoni 99.3 7.1E-11 2.4E-15 127.7 17.6 174 78-257 402-583 (681)
94 3urz_A Uncharacterized protein 99.3 1.4E-10 4.9E-15 105.0 16.7 165 66-235 3-185 (208)
95 3urz_A Uncharacterized protein 99.3 1.5E-10 5.2E-15 104.8 16.8 190 454-669 4-195 (208)
96 4ga2_A E3 SUMO-protein ligase 99.3 1E-11 3.5E-16 105.6 8.5 144 530-679 3-148 (150)
97 2pzi_A Probable serine/threoni 99.2 1.4E-10 4.8E-15 125.4 17.5 174 465-644 402-583 (681)
98 3dra_A Protein farnesyltransfe 99.2 4.8E-09 1.6E-13 99.4 25.6 226 433-664 47-292 (306)
99 2uy1_A Cleavage stimulation fa 99.2 1.6E-08 5.6E-13 104.0 31.5 203 437-657 197-412 (493)
100 3rjv_A Putative SEL1 repeat pr 99.2 1.7E-09 5.8E-14 98.1 21.2 174 472-659 4-198 (212)
101 3rjv_A Putative SEL1 repeat pr 99.2 1.7E-09 5.7E-14 98.2 21.0 174 437-624 4-198 (212)
102 3mv2_B Coatomer subunit epsilo 99.2 7.7E-09 2.6E-13 96.6 24.9 188 473-669 85-291 (310)
103 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.9E-09 9.9E-14 97.8 21.7 189 453-663 3-216 (225)
104 2fo7_A Synthetic consensus TPR 99.2 8.9E-10 3E-14 91.9 16.7 129 526-657 3-131 (136)
105 2uy1_A Cleavage stimulation fa 99.2 3E-08 1E-12 102.0 31.2 124 456-587 288-412 (493)
106 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.6E-14 98.6 20.5 186 67-272 4-214 (225)
107 3mv2_B Coatomer subunit epsilo 99.2 1.2E-08 4.2E-13 95.3 25.3 179 438-623 85-282 (310)
108 2r5s_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 99.1 13.2 162 69-234 8-171 (176)
109 4gco_A Protein STI-1; structur 99.1 7.4E-10 2.5E-14 90.6 12.9 114 556-673 9-123 (126)
110 3qou_A Protein YBBN; thioredox 99.1 1.2E-09 4.1E-14 104.5 16.3 162 67-233 117-281 (287)
111 2vsy_A XCC0866; transferase, g 99.1 1.2E-09 3.9E-14 116.4 17.8 154 45-202 2-158 (568)
112 3q7a_A Farnesyltransferase alp 99.1 1.7E-08 5.9E-13 96.4 23.8 186 32-223 55-258 (349)
113 2fo7_A Synthetic consensus TPR 99.1 3.5E-09 1.2E-13 88.2 17.0 131 68-201 2-132 (136)
114 3qou_A Protein YBBN; thioredox 99.1 1.8E-09 6.3E-14 103.2 16.4 165 488-657 116-283 (287)
115 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.7E-14 115.1 16.6 152 468-623 3-157 (568)
116 2r5s_A Uncharacterized protein 99.1 1.5E-09 5.1E-14 95.3 13.4 79 577-656 92-171 (176)
117 4f3v_A ESX-1 secretion system 99.1 6.2E-09 2.1E-13 95.9 17.2 197 466-671 18-247 (282)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 3.5E-09 1.2E-13 102.5 16.3 226 395-650 4-253 (307)
119 4gco_A Protein STI-1; structur 99.0 2.5E-09 8.5E-14 87.4 12.6 112 66-180 12-123 (126)
120 3gyz_A Chaperone protein IPGC; 99.0 6E-09 2.1E-13 87.7 13.8 103 559-665 36-138 (151)
121 2ifu_A Gamma-SNAP; membrane fu 99.0 7.3E-09 2.5E-13 100.3 15.8 222 45-298 4-253 (307)
122 4f3v_A ESX-1 secretion system 99.0 1.9E-09 6.5E-14 99.3 10.7 187 44-236 18-237 (282)
123 3gyz_A Chaperone protein IPGC; 99.0 2.2E-09 7.4E-14 90.5 9.7 128 32-172 10-137 (151)
124 3q7a_A Farnesyltransferase alp 99.0 2.2E-07 7.4E-12 88.8 24.4 189 46-257 51-257 (349)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.9E-08 6.3E-13 91.6 16.3 128 528-663 10-153 (213)
126 3u3w_A Transcriptional activat 98.9 1.8E-07 6.2E-12 89.8 23.7 164 494-657 80-265 (293)
127 2vgx_A Chaperone SYCD; alterna 98.9 2.4E-09 8.3E-14 90.5 8.9 102 558-663 20-121 (148)
128 2vgx_A Chaperone SYCD; alterna 98.9 4.9E-09 1.7E-13 88.6 10.1 111 53-166 8-118 (148)
129 2c2l_A CHIP, carboxy terminus 98.9 4.5E-09 1.5E-13 100.0 10.9 195 66-270 3-198 (281)
130 2e2e_A Formate-dependent nitri 98.9 7.8E-09 2.7E-13 90.9 11.4 133 535-672 21-156 (177)
131 3dss_A Geranylgeranyl transfer 98.9 8.8E-07 3E-11 84.3 25.6 164 49-217 47-237 (331)
132 2qfc_A PLCR protein; TPR, HTH, 98.9 2.5E-07 8.5E-12 88.8 22.4 167 491-657 77-265 (293)
133 2e2e_A Formate-dependent nitri 98.9 1.8E-08 6.3E-13 88.5 12.8 120 45-167 23-145 (177)
134 3upv_A Heat shock protein STI1 98.9 3.7E-08 1.3E-12 80.7 13.8 111 559-673 4-120 (126)
135 1a17_A Serine/threonine protei 98.9 6.2E-08 2.1E-12 83.9 15.9 130 525-657 14-145 (166)
136 1a17_A Serine/threonine protei 98.9 6.5E-08 2.2E-12 83.8 15.7 130 67-199 13-144 (166)
137 3u3w_A Transcriptional activat 98.9 8.3E-07 2.8E-11 85.1 24.9 163 460-622 81-265 (293)
138 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.7E-07 6E-12 85.0 19.2 128 69-202 8-151 (213)
139 3dss_A Geranylgeranyl transfer 98.9 1.9E-06 6.4E-11 82.0 26.4 192 470-668 90-312 (331)
140 1p5q_A FKBP52, FK506-binding p 98.9 2.9E-09 1E-13 104.2 7.2 150 46-199 127-292 (336)
141 4gcn_A Protein STI-1; structur 98.8 4.2E-08 1.4E-12 80.2 12.2 106 560-668 9-120 (127)
142 2xcb_A PCRH, regulatory protei 98.8 1.6E-08 5.5E-13 84.9 9.8 110 54-166 6-115 (142)
143 2c2l_A CHIP, carboxy terminus 98.8 2.7E-08 9.3E-13 94.6 12.5 194 453-657 3-198 (281)
144 2qfc_A PLCR protein; TPR, HTH, 98.8 3.4E-07 1.2E-11 87.8 20.3 167 456-622 77-265 (293)
145 2xcb_A PCRH, regulatory protei 98.8 3.3E-08 1.1E-12 82.9 11.2 101 560-664 19-119 (142)
146 2lni_A Stress-induced-phosphop 98.8 1E-07 3.5E-12 78.8 13.9 117 66-185 15-131 (133)
147 1na0_A Designed protein CTPR3; 98.8 1.6E-07 5.5E-12 76.5 14.6 116 66-184 8-123 (125)
148 1p5q_A FKBP52, FK506-binding p 98.8 1.1E-07 3.8E-12 92.9 15.8 131 525-657 148-293 (336)
149 1na0_A Designed protein CTPR3; 98.8 1.8E-07 6.3E-12 76.2 14.7 95 561-657 11-105 (125)
150 2vyi_A SGTA protein; chaperone 98.8 1.9E-07 6.5E-12 76.9 14.9 116 526-644 14-129 (131)
151 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.8E-12 78.7 13.2 117 33-152 17-133 (133)
152 2vyi_A SGTA protein; chaperone 98.8 1.8E-07 6.2E-12 77.0 14.5 120 66-188 11-130 (131)
153 1elw_A TPR1-domain of HOP; HOP 98.8 2.1E-07 7.1E-12 75.0 14.3 109 559-671 4-112 (118)
154 3gw4_A Uncharacterized protein 98.7 7.5E-08 2.6E-12 86.7 12.5 156 501-657 4-175 (203)
155 4gcn_A Protein STI-1; structur 98.7 1.3E-07 4.4E-12 77.3 12.6 106 67-175 8-119 (127)
156 3gw4_A Uncharacterized protein 98.7 1.1E-07 3.6E-12 85.7 13.0 155 45-200 5-175 (203)
157 2fbn_A 70 kDa peptidylprolyl i 98.7 1.4E-08 4.8E-13 91.1 6.6 144 45-192 17-176 (198)
158 1hxi_A PEX5, peroxisome target 98.7 7.4E-08 2.5E-12 77.9 10.3 98 562-663 20-117 (121)
159 3sz7_A HSC70 cochaperone (SGT) 98.7 7.7E-08 2.6E-12 83.1 11.0 105 558-666 10-114 (164)
160 2dba_A Smooth muscle cell asso 98.7 3.9E-07 1.3E-11 77.0 14.9 111 558-673 27-141 (148)
161 3q49_B STIP1 homology and U bo 98.7 1.5E-07 5.2E-12 78.3 11.6 99 557-657 7-105 (137)
162 3upv_A Heat shock protein STI1 98.7 4.8E-07 1.6E-11 73.9 14.2 98 67-166 4-101 (126)
163 1elw_A TPR1-domain of HOP; HOP 98.7 7.7E-07 2.6E-11 71.5 14.9 111 66-179 3-113 (118)
164 2xev_A YBGF; tetratricopeptide 98.6 5.9E-07 2E-11 73.7 13.7 106 563-672 6-117 (129)
165 2kck_A TPR repeat; tetratricop 98.6 3.3E-07 1.1E-11 73.0 11.3 96 560-657 7-105 (112)
166 3rkv_A Putative peptidylprolyl 98.6 1.9E-07 6.5E-12 80.4 10.5 110 561-673 13-140 (162)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 7.2E-07 2.5E-11 76.9 13.9 99 66-166 10-108 (164)
168 1hxi_A PEX5, peroxisome target 98.6 3.2E-07 1.1E-11 74.1 10.8 84 45-130 30-113 (121)
169 2fbn_A 70 kDa peptidylprolyl i 98.6 6.1E-07 2.1E-11 80.2 13.5 94 560-655 89-183 (198)
170 3q49_B STIP1 homology and U bo 98.6 6E-07 2.1E-11 74.6 12.5 100 65-166 7-106 (137)
171 4b4t_Q 26S proteasome regulato 98.6 3.5E-06 1.2E-10 86.2 20.9 164 493-656 59-243 (434)
172 1elr_A TPR2A-domain of HOP; HO 98.6 7.1E-07 2.4E-11 73.4 12.7 107 560-669 5-117 (131)
173 2dba_A Smooth muscle cell asso 98.6 1.8E-06 6.3E-11 72.7 15.3 114 523-640 27-144 (148)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5.1E-08 1.8E-12 99.8 6.2 142 47-192 249-405 (457)
175 2hr2_A Hypothetical protein; a 98.6 2.3E-07 7.7E-12 76.8 8.8 94 561-657 13-130 (159)
176 3k9i_A BH0479 protein; putativ 98.5 1.4E-07 4.8E-12 75.9 6.3 91 572-665 3-95 (117)
177 1elr_A TPR2A-domain of HOP; HO 98.5 9.1E-07 3.1E-11 72.7 11.3 112 67-181 4-121 (131)
178 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4.1E-11 69.6 11.0 99 66-166 5-106 (112)
179 2xev_A YBGF; tetratricopeptide 98.5 4.9E-06 1.7E-10 68.1 14.6 95 70-166 5-105 (129)
180 1dce_A Protein (RAB geranylger 98.4 6.4E-06 2.2E-10 86.1 18.3 181 36-222 34-241 (567)
181 3ro3_A PINS homolog, G-protein 98.4 8.5E-07 2.9E-11 76.2 9.8 132 526-657 11-157 (164)
182 3rkv_A Putative peptidylprolyl 98.4 1.2E-06 4.2E-11 75.3 10.5 100 66-166 10-126 (162)
183 3k9i_A BH0479 protein; putativ 98.4 4.6E-07 1.6E-11 72.8 7.2 88 45-133 3-92 (117)
184 1wao_1 Serine/threonine protei 98.4 1.3E-07 4.5E-12 97.2 4.7 118 533-653 15-134 (477)
185 2if4_A ATFKBP42; FKBP-like, al 98.4 6.1E-07 2.1E-11 87.7 9.2 148 489-657 179-327 (338)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.5E-06 8.6E-11 87.2 13.9 96 559-656 317-413 (457)
187 4b4t_Q 26S proteasome regulato 98.4 2E-05 6.7E-10 80.5 20.7 200 388-587 10-244 (434)
188 1ihg_A Cyclophilin 40; ppiase 98.4 1.9E-06 6.6E-11 85.0 12.4 80 594-676 273-352 (370)
189 2hr2_A Hypothetical protein; a 98.4 3.5E-06 1.2E-10 69.7 11.7 98 67-165 11-130 (159)
190 1dce_A Protein (RAB geranylger 98.4 1.4E-05 4.8E-10 83.5 19.3 173 470-647 45-244 (567)
191 1wao_1 Serine/threonine protei 98.4 1E-06 3.5E-11 90.5 10.4 115 44-161 18-134 (477)
192 1ihg_A Cyclophilin 40; ppiase 98.4 3E-06 1E-10 83.7 13.1 92 558-651 272-363 (370)
193 1zu2_A Mitochondrial import re 98.3 7.9E-07 2.7E-11 73.4 6.2 97 573-673 16-133 (158)
194 3ro3_A PINS homolog, G-protein 98.3 3.5E-06 1.2E-10 72.2 10.7 133 491-623 11-158 (164)
195 2if4_A ATFKBP42; FKBP-like, al 98.3 1.6E-06 5.3E-11 84.8 9.2 145 526-692 181-327 (338)
196 1klx_A Cysteine rich protein B 98.3 2.4E-05 8.2E-10 64.6 14.3 110 539-659 10-127 (138)
197 2kat_A Uncharacterized protein 98.2 9E-06 3.1E-10 64.9 9.8 81 50-132 3-83 (115)
198 2l6j_A TPR repeat-containing p 98.2 1.7E-06 5.8E-11 68.6 5.0 93 559-653 4-102 (111)
199 1klx_A Cysteine rich protein B 98.1 6.8E-05 2.3E-09 61.8 14.7 111 503-624 9-127 (138)
200 3n71_A Histone lysine methyltr 98.1 2.6E-05 8.9E-10 79.3 12.6 123 534-657 319-463 (490)
201 1zu2_A Mitochondrial import re 98.1 1.4E-05 4.7E-10 66.0 8.4 69 46-116 16-94 (158)
202 2l6j_A TPR repeat-containing p 98.1 3.4E-06 1.2E-10 66.8 4.7 94 66-161 3-102 (111)
203 2kat_A Uncharacterized protein 98.0 2.7E-05 9.1E-10 62.1 9.4 79 577-657 3-81 (115)
204 1na3_A Designed protein CTPR2; 98.0 3.9E-05 1.3E-09 57.8 9.9 83 66-150 8-90 (91)
205 1na3_A Designed protein CTPR2; 98.0 4E-05 1.4E-09 57.8 9.9 78 561-640 11-88 (91)
206 3n71_A Histone lysine methyltr 97.9 2.7E-05 9.2E-10 79.2 8.5 122 44-165 321-463 (490)
207 3ma5_A Tetratricopeptide repea 97.8 7E-05 2.4E-09 57.7 8.0 61 560-621 8-68 (100)
208 3ma5_A Tetratricopeptide repea 97.8 8.9E-05 3.1E-09 57.1 8.5 66 591-657 4-69 (100)
209 1pc2_A Mitochondria fission pr 97.7 0.00021 7.1E-09 58.3 10.0 96 575-674 14-114 (152)
210 3ly7_A Transcriptional activat 97.7 0.001 3.4E-08 63.5 15.0 75 591-669 274-348 (372)
211 3lvg_A Clathrin heavy chain 1; 97.5 7E-08 2.4E-12 92.7 -15.9 224 101-360 53-276 (624)
212 3bee_A Putative YFRE protein; 97.5 0.00069 2.4E-08 50.8 8.8 70 591-663 3-75 (93)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00012 4E-09 56.2 4.4 53 569-622 10-63 (99)
214 3ly7_A Transcriptional activat 97.4 0.0025 8.6E-08 60.8 14.0 71 558-632 276-346 (372)
215 3u64_A Protein TP_0956; tetrat 97.4 0.023 8E-07 51.8 18.9 85 575-661 179-272 (301)
216 3qww_A SET and MYND domain-con 97.3 0.00072 2.5E-08 67.5 9.9 86 572-657 311-410 (433)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00057 2E-08 52.3 7.2 59 73-132 6-65 (99)
218 3u64_A Protein TP_0956; tetrat 97.3 0.015 5.2E-07 53.0 16.8 82 154-237 180-270 (301)
219 3lvg_A Clathrin heavy chain 1; 97.3 1.9E-07 6.6E-12 89.8 -15.7 266 65-367 52-324 (624)
220 3qwp_A SET and MYND domain-con 97.3 0.0029 9.9E-08 63.3 13.4 107 567-674 295-419 (429)
221 3qww_A SET and MYND domain-con 97.2 0.0014 4.7E-08 65.5 10.3 87 536-622 310-410 (433)
222 3bee_A Putative YFRE protein; 97.2 0.0025 8.5E-08 47.7 9.3 66 66-132 5-73 (93)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0044 1.5E-07 47.7 9.7 70 596-667 7-82 (104)
224 1nzn_A CGI-135 protein, fissio 96.9 0.0051 1.8E-07 48.0 9.0 95 575-673 17-116 (126)
225 3qwp_A SET and MYND domain-con 96.9 0.0047 1.6E-07 61.8 11.2 90 533-622 296-399 (429)
226 1pc2_A Mitochondria fission pr 96.9 0.0079 2.7E-07 49.0 10.2 87 46-133 12-102 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0087 3E-07 46.0 9.0 67 66-132 4-76 (104)
228 4h7y_A Dual specificity protei 96.6 0.049 1.7E-06 43.6 12.2 102 64-167 10-124 (161)
229 4ady_A RPN2, 26S proteasome re 96.5 1.4 4.6E-05 48.0 45.1 278 391-676 383-673 (963)
230 4ady_A RPN2, 26S proteasome re 96.1 2 6.8E-05 46.7 43.6 260 355-622 382-657 (963)
231 1y8m_A FIS1; mitochondria, unk 96.1 0.19 6.6E-06 39.9 13.0 82 591-674 36-120 (144)
232 3mkq_B Coatomer subunit alpha; 96.0 0.58 2E-05 39.2 16.6 98 78-196 16-113 (177)
233 3mkq_B Coatomer subunit alpha; 95.9 0.63 2.2E-05 38.9 16.2 25 208-232 35-59 (177)
234 3o48_A Mitochondria fission 1 95.9 0.099 3.4E-06 40.9 10.4 82 591-674 37-121 (134)
235 1wy6_A Hypothetical protein ST 95.9 0.47 1.6E-05 37.1 15.5 65 559-624 91-155 (172)
236 1wy6_A Hypothetical protein ST 95.8 0.5 1.7E-05 36.9 14.2 140 500-661 18-157 (172)
237 4h7y_A Dual specificity protei 95.8 0.11 3.6E-06 41.7 10.2 51 503-554 74-124 (161)
238 3mkq_A Coatomer beta'-subunit; 95.7 0.28 9.7E-06 54.2 18.0 28 206-233 680-707 (814)
239 3mkq_A Coatomer beta'-subunit; 95.7 0.24 8.3E-06 54.8 17.2 153 76-267 608-761 (814)
240 1nzn_A CGI-135 protein, fissio 95.4 0.083 2.8E-06 41.3 8.4 67 452-518 33-103 (126)
241 1qsa_A Protein (soluble lytic 94.9 4.4 0.00015 42.3 27.9 116 503-622 228-347 (618)
242 3ffl_A Anaphase-promoting comp 94.7 0.14 4.9E-06 42.0 8.2 133 32-181 22-164 (167)
243 3lpz_A GET4 (YOR164C homolog); 94.6 3 0.0001 39.2 21.0 81 626-710 133-214 (336)
244 3ffl_A Anaphase-promoting comp 93.8 0.28 9.6E-06 40.3 8.3 120 69-201 22-151 (167)
245 4gns_B Protein CSD3, chitin bi 93.8 0.36 1.2E-05 51.3 11.3 57 142-199 342-398 (754)
246 1y8m_A FIS1; mitochondria, unk 93.7 1.3 4.4E-05 35.3 11.5 66 522-587 37-105 (144)
247 4b4t_P 26S proteasome regulato 93.5 5.9 0.0002 39.6 19.1 93 529-621 142-245 (445)
248 3o48_A Mitochondria fission 1 93.4 0.57 2E-05 36.7 8.9 26 562-587 81-106 (134)
249 3txn_A 26S proteasome regulato 93.3 6.3 0.00022 38.3 22.7 27 383-409 20-46 (394)
250 2wpv_A GET4, UPF0363 protein Y 92.8 6.2 0.00021 36.8 18.6 79 627-709 132-214 (312)
251 4b4t_P 26S proteasome regulato 92.7 8.9 0.0003 38.3 19.1 95 458-552 141-246 (445)
252 4gns_B Protein CSD3, chitin bi 92.5 0.66 2.3E-05 49.3 10.9 51 604-655 347-397 (754)
253 1qsa_A Protein (soluble lytic 92.1 13 0.00044 38.8 33.7 115 292-410 229-347 (618)
254 4fhn_B Nucleoporin NUP120; pro 91.9 3.2 0.00011 47.5 16.7 52 72-128 817-868 (1139)
255 2ff4_A Probable regulatory pro 91.4 1.3 4.5E-05 43.4 11.2 72 598-670 175-251 (388)
256 4fhn_B Nucleoporin NUP120; pro 90.7 5.1 0.00018 45.8 16.7 188 66-270 841-1049(1139)
257 2wpv_A GET4, UPF0363 protein Y 89.0 15 0.0005 34.3 18.1 26 276-301 133-158 (312)
258 2ff4_A Probable regulatory pro 88.3 2.7 9.2E-05 41.2 10.6 120 45-180 128-253 (388)
259 1v54_E Cytochrome C oxidase po 85.7 8.5 0.00029 28.3 8.9 61 612-673 28-88 (109)
260 3esl_A Checkpoint serine/threo 85.4 6.1 0.00021 33.7 9.5 53 610-662 95-148 (202)
261 4b4t_R RPN7, 26S proteasome re 84.9 7.6 0.00026 38.6 11.9 62 526-587 133-196 (429)
262 3txn_A 26S proteasome regulato 83.4 34 0.0012 33.2 24.7 251 347-630 19-290 (394)
263 1zbp_A Hypothetical protein VP 82.7 5.1 0.00017 36.0 8.3 56 567-623 5-60 (273)
264 2y69_E Cytochrome C oxidase su 80.4 15 0.00051 28.8 8.9 61 612-673 71-131 (152)
265 4b4t_R RPN7, 26S proteasome re 80.4 16 0.00054 36.3 12.2 62 68-129 132-195 (429)
266 4a1g_A Mitotic checkpoint seri 79.6 13 0.00044 30.1 8.9 52 611-662 82-134 (152)
267 2wvi_A Mitotic checkpoint seri 76.9 18 0.0006 29.8 9.1 52 612-663 78-130 (164)
268 3esl_A Checkpoint serine/threo 76.4 16 0.00055 31.2 9.0 58 572-629 92-150 (202)
269 1v54_E Cytochrome C oxidase po 75.9 21 0.00073 26.3 9.8 66 31-96 9-74 (109)
270 3lpz_A GET4 (YOR164C homolog); 75.9 53 0.0018 30.8 21.8 26 345-370 134-159 (336)
271 1zbp_A Hypothetical protein VP 75.6 8.1 0.00028 34.8 7.3 52 323-375 8-59 (273)
272 3ubw_A 14-3-3E, 14-3-3 protein 74.0 41 0.0014 30.0 11.3 48 610-657 172-227 (261)
273 2y69_E Cytochrome C oxidase su 69.4 39 0.0013 26.5 9.5 44 86-129 72-115 (152)
274 4aez_C MAD3, mitotic spindle c 68.4 21 0.00072 31.0 8.1 52 611-662 131-183 (223)
275 4a1g_A Mitotic checkpoint seri 67.8 37 0.0012 27.5 8.8 54 576-629 82-136 (152)
276 2uwj_G Type III export protein 66.4 36 0.0012 25.0 7.8 18 149-166 80-97 (115)
277 2p58_C Putative type III secre 65.5 38 0.0013 24.9 8.7 50 111-166 49-98 (116)
278 2wvi_A Mitotic checkpoint seri 62.7 46 0.0016 27.3 8.7 55 576-630 77-132 (164)
279 3ltm_A Alpha-REP4; protein eng 62.2 75 0.0026 27.2 17.6 107 558-676 94-200 (211)
280 4b4t_S RPN3, 26S proteasome re 62.1 1.4E+02 0.0046 30.1 14.0 67 100-166 229-299 (523)
281 3uzd_A 14-3-3 protein gamma; s 60.2 62 0.0021 28.7 9.6 48 610-657 147-202 (248)
282 2br9_A 14-3-3E, 14-3-3 protein 59.5 68 0.0023 28.3 9.7 48 610-657 146-201 (234)
283 3iqu_A 14-3-3 protein sigma; s 59.1 57 0.0019 28.7 9.1 48 610-657 149-204 (236)
284 1o9d_A 14-3-3-like protein C; 54.5 1.2E+02 0.0041 27.2 10.7 47 611-657 152-206 (260)
285 4gq2_M Nucleoporin NUP120; bet 49.7 2.2E+02 0.0075 31.7 14.3 132 72-221 815-950 (950)
286 2npm_A 14-3-3 domain containin 47.2 1.6E+02 0.0054 26.4 11.6 48 610-657 172-226 (260)
287 1bpo_A Protein (clathrin); cla 46.2 1.2E+02 0.0042 29.8 9.9 28 66-93 360-387 (494)
288 3pvs_A Replication-associated 45.9 2.3E+02 0.008 28.0 13.7 171 469-655 166-356 (447)
289 4aez_C MAD3, mitotic spindle c 45.7 57 0.002 28.4 6.9 53 576-628 131-184 (223)
290 2ijq_A Hypothetical protein; s 42.9 67 0.0023 26.3 6.5 61 36-96 36-104 (161)
291 2d2s_A Exocyst complex compone 41.7 1.6E+02 0.0056 25.9 9.5 88 73-163 24-117 (235)
292 2r9g_A AAA ATPase, central reg 40.7 1.7E+02 0.0058 24.9 10.5 56 571-627 26-86 (204)
293 3ltm_A Alpha-REP4; protein eng 40.2 1.7E+02 0.0059 24.8 19.5 166 50-235 19-184 (211)
294 3bge_A Predicted ATPase; struc 36.9 1.9E+02 0.0066 24.5 9.7 38 571-608 19-56 (201)
295 4ets_A Ferric uptake regulatio 36.6 55 0.0019 26.9 5.3 71 48-118 13-85 (162)
296 2d2s_A Exocyst complex compone 35.3 2.2E+02 0.0074 25.1 9.2 91 529-622 23-119 (235)
297 4gq2_M Nucleoporin NUP120; bet 35.0 2.5E+02 0.0084 31.3 11.8 48 209-256 899-950 (950)
298 1ya0_A SMG-7 transcript varian 34.6 2.2E+02 0.0076 28.6 10.3 77 528-606 156-232 (497)
299 3ctd_A Putative ATPase, AAA fa 33.7 2.3E+02 0.0078 24.3 9.9 37 572-608 48-84 (213)
300 4b4t_S RPN3, 26S proteasome re 32.6 3.3E+02 0.011 27.5 10.9 124 136-267 230-366 (523)
301 2uwj_G Type III export protein 31.3 1.6E+02 0.0054 21.7 9.3 51 146-202 48-98 (115)
302 2p58_C Putative type III secre 30.2 1.7E+02 0.0057 21.7 10.1 50 146-201 49-98 (116)
303 1ya0_A SMG-7 transcript varian 27.7 3.7E+02 0.013 27.0 10.5 79 105-185 155-233 (497)
304 2o8p_A 14-3-3 domain containin 26.2 3.3E+02 0.011 23.8 15.3 52 606-657 137-196 (227)
305 3bu8_A Telomeric repeat-bindin 25.1 2.7E+02 0.0093 23.9 7.4 23 179-201 121-143 (235)
306 1oyz_A Hypothetical protein YI 25.1 3.7E+02 0.013 24.0 22.2 176 66-257 36-221 (280)
307 2ijq_A Hypothetical protein; s 24.8 2.8E+02 0.0097 22.6 8.1 53 500-552 43-103 (161)
308 2w2u_A Hypothetical P60 katani 24.7 73 0.0025 22.5 3.5 18 640-657 30-47 (83)
309 3bu8_A Telomeric repeat-bindin 24.4 2.7E+02 0.0093 23.9 7.3 49 118-166 88-143 (235)
310 2xig_A Ferric uptake regulatio 24.2 2.7E+02 0.0092 22.3 7.4 47 71-117 30-76 (150)
311 1bpo_A Protein (clathrin); cla 24.0 5.3E+02 0.018 25.5 10.8 140 81-233 343-482 (494)
312 2v6y_A AAA family ATPase, P60 23.4 79 0.0027 22.3 3.5 17 641-657 23-39 (83)
313 2crb_A Nuclear receptor bindin 23.0 1.4E+02 0.0048 21.5 4.5 26 69-94 17-42 (97)
314 1oyz_A Hypothetical protein YI 22.9 4.1E+02 0.014 23.7 23.8 18 592-609 204-221 (280)
315 2fe3_A Peroxide operon regulat 22.5 2.3E+02 0.0079 22.5 6.7 46 72-117 26-71 (145)
316 3eyy_A Putative iron uptake re 21.6 2.5E+02 0.0084 22.3 6.6 44 73-117 24-67 (145)
317 3iqu_A 14-3-3 protein sigma; s 20.6 4.4E+02 0.015 23.2 9.7 48 575-622 149-204 (236)
318 2cpt_A SKD1 protein, vacuolar 20.0 1.9E+02 0.0064 22.1 5.2 50 641-692 30-84 (117)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-40 Score=360.35 Aligned_cols=522 Identities=11% Similarity=0.019 Sum_probs=395.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEA 191 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 191 (721)
....|....+...+... +.++...++.++..|.+.|++++|+.+|+++.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555554433 3456778888888888888888888888888764 56777888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 192 LDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
+.+|+++... +++..+++.++.+|.+.|++++|+++|+++... +.. +..+.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C---------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----ccccccccc-----------ccc
Confidence 8888877543 567788888888888888888888888752211 100 011111111 112
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCCCCHH
Q 004976 272 GISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAI--DL-LNWMVKKGEKLSVI 348 (721)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~ 348 (721)
+.+++..+|+.++.+|.+.|++++|+++|+++.+.+. .+...+..++..+...+..+.+. .+ +..+...+......
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 3344667888888888888888888888888887532 13445555554443332222211 11 33333333333445
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH
Q 004976 349 TYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQG 428 (721)
Q Consensus 349 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (721)
++..++..|.+.|++++|..+|+++.+. +++..++..++.++.+.|++++|+++|+++....+ .+..++..++.+
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~ 348 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP---YNLDVYPLHLAS 348 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCCTTHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc---ccHHHHHHHHHH
Confidence 5666677888899999999999988764 46888999999999999999999999999987543 367788999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004976 429 LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIA 508 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (721)
+.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+..+. +...|..++.++.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 667889999999999999999999999999887544 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 004976 509 KGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQM 588 (721)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (721)
+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 427 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999998874 3477889999999999999999999999999865 346789999999999999999999999999885
Q ss_pred ----CCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 004976 589 ----GLPPD--ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 589 ----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 662 (721)
+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.++++++++ +.|
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p 581 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP 581 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence 45677 6799999999999999999999999999875 66899999999999999999999999999998 788
Q ss_pred CHHHHHHHHHHH
Q 004976 663 DQELTSTILVCL 674 (721)
Q Consensus 663 ~~~~~~~ll~~~ 674 (721)
++......+..+
T Consensus 582 ~~~~~~~~l~~~ 593 (597)
T 2xpi_A 582 NEIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHT
T ss_pred CChHHHHHHHHH
Confidence 776666665543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-40 Score=357.32 Aligned_cols=524 Identities=12% Similarity=0.040 Sum_probs=380.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHH
Q 004976 77 LVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKA 156 (721)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 156 (721)
....|....+...+..+. .++...|..++..+.+.|++++|..+|++++.. .|+...+..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 455666666666665542 356778999999999999999999999999864 34668889999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 157 IELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
+.+|+++... +++..+++.++.+|.+.|++++|+++|+++.. +.. .+..+.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------ccc
Confidence 9999998754 67899999999999999999999999985322 210 0011111111 112
Q ss_pred CCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCChh
Q 004976 237 GLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIA--M-LDAMMERGIRPDVV 313 (721)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~ 313 (721)
+.+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..++..+...+..+.+.. + +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 344456677777777777777777777777777653 1134444445444433322222111 1 33333332223344
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004976 314 TYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIG 393 (721)
Q Consensus 314 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (721)
++..++..|.+.|++++|.++++++.+. +++..++..++..|.+.|++++|+.+|+++.+.+. .+..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHH
Confidence 4555566777778888888888877664 46777888888888888888888888888876542 25667777888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 394 KFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKA 473 (721)
Q Consensus 394 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 473 (721)
..|++++|..+++.+....+ .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|...|++++|
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHP---EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCT---TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888876432 467778888888888888888888888887754 55677888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 474 LEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA 553 (721)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 553 (721)
+++|+++.+.++. +...+..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888877543 77788888888889999999999999888764 336778888999999999999999999988775
Q ss_pred ----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 004976 554 ----NCEPD--VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKP 627 (721)
Q Consensus 554 ----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 627 (721)
+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|...|++++|.+.|+++++.. +.
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~ 582 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PN 582 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC
Confidence 45676 6789999999999999999999999998864 5578899999999999999999999999999874 66
Q ss_pred CHHHHHHHHHHHH
Q 004976 628 NACVYDSLLKGFS 640 (721)
Q Consensus 628 ~~~~~~~l~~~~~ 640 (721)
+...+..++.+|.
T Consensus 583 ~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 583 EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHh
Confidence 7788888877664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.6e-29 Score=252.14 Aligned_cols=229 Identities=16% Similarity=0.137 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004976 423 NNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKI 502 (721)
Q Consensus 423 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 502 (721)
..++..+...|++++|...|+++.+.. |.+..++..++..+...|++++|...|+++++.++. +...+..++..+...
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Confidence 333334444444444444444443332 223334444444444444444444444444443322 333444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 004976 503 GMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELY 582 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (721)
|++++|...++++....+ .+..++..++.++...|++++|+..|++++..+ +.+..++..++.++...|++++|++.|
T Consensus 217 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444443321 123344444444444444444444444444422 112334444444444444444444444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 583 NNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+++++.. +.+..++..++.++...|++++|++.++++++.. +.+..++..++.++.+.|++++|...++++++
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444432 3333444444444444444444444444444431 33344444444444444444444444444444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.8e-29 Score=253.00 Aligned_cols=379 Identities=17% Similarity=0.090 Sum_probs=179.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 74 MEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
+..+.+.|++++|+..|+++++.. |.+...+..++..+...|++++|...++.+++.. +.+..++..++..+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 444455555555555555555543 3444444555555555555555555555555443 23445555555555555555
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 154 NKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
++|+..|+++.+.. +.+..+|..++.++.+.|++++|...|+++...+ +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555442 2233345555555555555555555555554432 112233444444555555555555555555
Q ss_pred hHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004976 234 KAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVV 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 313 (721)
.+..+. +..+|..++.++...|++++|...|+++++.+ +.+...+..++.++...|++++|+..+++..... +.+..
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 444222 34445555555555555555555555555432 1123344445555555555555555555444431 11234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004976 314 TYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIG 393 (721)
Q Consensus 314 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (721)
++..++..+...|++++|...++++++.. +.+..++..++..+.+.|++++|+..++++.+.. +.+..++..++.++.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 44444455555555555555555554432 2234444445555555555555555555544431 223444444444455
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004976 394 KFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYL 465 (721)
Q Consensus 394 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (721)
..|++++|.+.++++++..+ .+..++..++.++.+.|++++|...|+++.+.. |.+...+..++..+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 384 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCT---TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHH
Confidence 55555555555554443211 233444444455555555555555555544432 233344444444333
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.6e-26 Score=239.80 Aligned_cols=461 Identities=12% Similarity=0.009 Sum_probs=294.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHH
Q 004976 172 NCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISG 251 (721)
Q Consensus 172 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (721)
...+......+.+.|++++|+..|+++...+ |+..+|..++.++.+.|++++|+..++++++.++. +..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3455566666667777777777777776653 56666666777777777777777777776665433 55666666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 004976 252 FCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKA 331 (721)
Q Consensus 252 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 331 (721)
+...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------- 152 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK--------- 152 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH---------
Confidence 7777777777777776666542 233333333333333222222222222222221111111100000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHH
Q 004976 332 IDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGK---FGKVDEALELFNLV 408 (721)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 408 (721)
......|....... +........... ....+.+...+...+..+.. .|++++|+..++++
T Consensus 153 -------~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 153 -------DKQENLPSVTSMAS----FFGIFKPELTFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHH----HHTTSCCCCCCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred -------hhccCCchhHHHHH----HHhhcCHHHHHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00001111111111 000000000000 00001124444444444443 67788888888777
Q ss_pred Hh-----c--CCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 409 LK-----E--EKYV----QLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMW 477 (721)
Q Consensus 409 ~~-----~--~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 477 (721)
+. . .+.. +.+..++..++..+...|++++|...++++.+.. |+...+..++..+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 2 1111 1235567778888888888888888888888764 23777888888888888888998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004976 478 KHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEP 557 (721)
Q Consensus 478 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 557 (721)
+++++..+. +...+..++.++...|++++|...++++.+..+ .+...+..++..+...|++++|+.+++++.+.. +.
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 888877544 667788888888899999999999998887743 256778888888899999999999999888754 23
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCC
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD------ALTYSTLIHRFLR---FGLLSDAKSVYQKMVASGHKPN 628 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 628 (721)
+...+..++..+...|++++|...++++.+.. +.+ ...+..++.++.. .|++++|.+.+++++... +.+
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 56788888899999999999999999988742 112 2378889999999 999999999999998864 667
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 629 ACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
..++..++.++...|++++|...++++++ +.|+.......+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 88889999999999999999999999998 678776655444
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.2e-26 Score=239.16 Aligned_cols=461 Identities=11% Similarity=0.010 Sum_probs=317.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMD 215 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 215 (721)
....+...+..+.+.|++++|+..|+++++.+ |+..+|..++.+|.+.|++++|+..++++...+ +.+..++..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999999974 789999999999999999999999999998875 456678999999
Q ss_pred HHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 004976 216 GLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKE 295 (721)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 295 (721)
++.+.|++++|...|+++...++. +......++..+........+.+.+..+...+..|+...+.... +
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~---- 150 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------E---- 150 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh------H----
Confidence 999999999999999999988643 55555555555554444444444443333322222222111100 0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHH
Q 004976 296 AIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ---KGLVGEAYEILNM 372 (721)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~ 372 (721)
... .....|+...... +.......... .....+.+...+...+..+.. .|++++|+..+++
T Consensus 151 ---~~~---~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 151 ---RKD---KQENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ---HHh---hccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 000 0001122221111 11111100000 000012234455555555554 6778888888877
Q ss_pred HHH-----CCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHH
Q 004976 373 MIE-----KGMM--------PDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAV 439 (721)
Q Consensus 373 ~~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 439 (721)
+.+ .... .+..++..++..+...|++++|...+++++...+ +...+..++.++...|++++|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc----cHHHHHHHHHHHHHCCCHHHHH
Confidence 776 3111 1244666777788888888888888888887543 2677778888888888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 440 KIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSG 519 (721)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 519 (721)
..++++.... +.+...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+..
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 291 NYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp GHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 8888888764 556777888888888888888888888888887554 56778888888888888888888888888763
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC
Q 004976 520 NDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCE-PD----VVSFNTMINGTLK---AGDLQSARELYNNMLQMGLP 591 (721)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 591 (721)
+.+...+..++..+...|++++|...++++...... ++ ...+..++.++.. .|++++|...++++.+.. +
T Consensus 369 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 369 -PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 235667888888888899999999998888764311 11 3378888888888 899999999999988853 4
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004976 592 PDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSL 635 (721)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 635 (721)
.+..++..++.++...|++++|.+.|+++++.. +.+...+..+
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 556788888999999999999999999998863 4444444433
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.1e-24 Score=226.44 Aligned_cols=330 Identities=12% Similarity=0.090 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
..+...|..++..+|. +...+..++..+.+.|++++|+.+|++++... |.+..++..++.++...|++++|...++.+
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455556666666544 78889999999999999999999999999875 677889999999999999999999999999
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHH
Q 004976 129 LKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDN---CSYNTI------------VNGLCKAKRFKEALD 193 (721)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~ 193 (721)
++.+ +.+..++..++..|...|++++|+..|+++.+.+ +.+. ..+..+ ...+...|++++|+.
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9876 4478889999999999999999999999999874 3334 555555 344778888888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004976 194 ILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGI 273 (721)
Q Consensus 194 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 273 (721)
.|+++.... +.+..++..++.++.+.|++++|+..|+++.+..+. +..++..++.+|...|++++|...|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887754 446677888888888888888888888888876433 67788888888888888888888888888753
Q ss_pred CCCcchHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHH
Q 004976 274 SPNVVTYNSL------------MHCLCKIGQWKEAIAMLDAMMERGIRPD-----VVTYTCLIEGLCKGGRATKAIDLLN 336 (721)
Q Consensus 274 ~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 336 (721)
+.+...+..+ +..+...|++++|+..|+++.+. .|+ ...+..++.++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233344333 67778888888888888888774 333 3356777788888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004976 337 WMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLL 389 (721)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (721)
++... .+.+...+..++.++...|++++|...++++.+... .+...+..+.
T Consensus 320 ~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 370 (450)
T 2y4t_A 320 EVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLE 370 (450)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHH
T ss_pred HHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 87766 344677788888888888888888888888877532 2344554444
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.3e-24 Score=231.56 Aligned_cols=265 Identities=11% Similarity=0.042 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 396 GKVDEALELFNLVLKEEKYVQL----DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIID 471 (721)
Q Consensus 396 ~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (721)
+++++|..+++.+++..+.... -..++..++..+...|++++|...++++.+.. |+...+..++..+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 4667777777777764332100 02245666677778888888888888888763 45777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 472 KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIR 551 (721)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 551 (721)
+|...++++++..+. +...+..++.++...|++++|...++++....+ .+...+..++.++...|++++|..+++++.
T Consensus 294 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888887644 677888888888888888888888888887642 246678888888888999999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhc----------CCHhHHHHH
Q 004976 552 NANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG-----LPPDALTYSTLIHRFLRF----------GLLSDAKSV 616 (721)
Q Consensus 552 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~ 616 (721)
... +.+...+..++..+...|++++|+..|+++.+.. .......+..++.++... |++++|+..
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 764 3355678888888889999999999998887742 001112244556777777 999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004976 617 YQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTS 668 (721)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (721)
++++++.. +.+...+..++.++...|++++|...++++++ +.|+.....
T Consensus 451 ~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~ 499 (537)
T 3fp2_A 451 LTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDEKL 499 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 99998874 66788899999999999999999999999988 556544443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.6e-24 Score=228.19 Aligned_cols=434 Identities=12% Similarity=0.030 Sum_probs=254.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....|..++..+.+.|++++|+..|++++..+ |.+..++..++.++...|++++|.+.++.+++.+ +.+..++..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678888999999999999999999999886 7788889999999999999999999999998876 447888899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCh
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC--CPNLITYSTLMDGLCKDGRV 223 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~ 223 (721)
++...|++++|+..|+ .... .|+.. ...+..+...+...+|...++++..... .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 4433 22221 2223345555666788888888765310 00111112333444455555
Q ss_pred hHHHHHHHHHhHCCCCCC-ccchHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC-c-------chHHHHHHH
Q 004976 224 DEAMGLLEEMKAKGLDAD-VVVYSALISGFCS--------NGSFDKGKKLFDDMLEKGISPN-V-------VTYNSLMHC 286 (721)
Q Consensus 224 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~-~-------~~~~~l~~~ 286 (721)
+.+...+...... .+. ......+...+.. .|++++|..+|+++++.. |+ . .++..++..
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHH
Confidence 5554443332221 111 1122222222222 246777777777777652 22 1 235555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 004976 287 LCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEA 366 (721)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 366 (721)
+...|++++|+..++++.+. .|+..++..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 66667777777777776664 3445566666666666677777777776666653 33556666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 367 YEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMA 446 (721)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 446 (721)
+..++++.+... .+...+..++.++...|++++|...+++++...+ .+...+..++.++...|++++|...++++.
T Consensus 330 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 330 KEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666665422 2345555666666666666666666666665432 234455556666666666666666666654
Q ss_pred HCCC-----CCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004976 447 ERGI-----SGNLVTFNILIGKYLTA----------GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGI 511 (721)
Q Consensus 447 ~~~~-----~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (721)
+... ......+...+..+... |++++|...++++++..+. +...+..++.++...|++++|...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHH
Confidence 4310 00111122333444444 5555555555555554332 444555555555555555555555
Q ss_pred HHHHHHc
Q 004976 512 FSKMRVS 518 (721)
Q Consensus 512 ~~~~~~~ 518 (721)
|+++.+.
T Consensus 485 ~~~al~~ 491 (537)
T 3fp2_A 485 FEDSAIL 491 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.4e-25 Score=230.60 Aligned_cols=199 Identities=20% Similarity=0.273 Sum_probs=133.6
Q ss_pred HHHHHCCCCcCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHH
Q 004976 126 GLILKRGFVVNI-YAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKR---------FKEALDIL 195 (721)
Q Consensus 126 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~ 195 (721)
..+.+.+....+ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|.+.+. .++|.++|
T Consensus 14 ~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 14 RKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp ----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence 344334333333 34666677777777777777777777777777777777777777765443 46667777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004976 196 PDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISP 275 (721)
Q Consensus 196 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 275 (721)
++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 94 ~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 94 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCK 324 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (721)
|..+|+.++.+|++.|++++|.++|++|.+.|..|+..|+..++..+..
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777666666554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.1e-23 Score=213.89 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=160.8
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004976 241 DVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIE 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 320 (721)
+...+..++..+.+.|++++|..+|+++++.. +.+..++..++.++...|++++|+..|+++.+.+ +.+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44555555555666666666666666555542 2244455555555555566666666665555542 113444555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004976 321 GLCKGGRATKAIDLLNWMVKKGEKLSV---ITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGK 397 (721)
Q Consensus 321 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 397 (721)
++...|++++|...|+++.+.. +.+. ..+..++..+.. ..+..++..+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 5555555555555555555442 1122 333333222110 012223344556677
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 398 VDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMW 477 (721)
Q Consensus 398 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 477 (721)
+++|+..|+.++...+ .+..++..++.+|...|++++|+..|+++.+.. +.+..++..++..|...|++++|+..+
T Consensus 159 ~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777665433 355666667777777777777777777766553 445666777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHH
Q 004976 478 KHLLELGHVPNSVTYSSM------------IDGFCKIGMLNIAKGIFSKMRVSGNDPT----LFDYNALMASLCKESSLE 541 (721)
Q Consensus 478 ~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 541 (721)
+++.+..+. +...+..+ +..+...|++++|...|+++.+..+. + ...+..++.++.+.|+++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 777665432 33333222 34444444444444444444443111 1 123344444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 542 QAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 542 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
+|+..++++.... +.+...+..++.+|...|++++|...++++++
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444322 11333444444444444444444444444444
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=3.2e-25 Score=227.83 Aligned_cols=205 Identities=13% Similarity=0.166 Sum_probs=139.8
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---------hh
Q 004976 155 KAIELFGEIKSNGVSPDNC-SYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGR---------VD 224 (721)
Q Consensus 155 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~ 224 (721)
.+..+.+++.+.+..+.+. .++.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455566666665544433 5677788888888888888888888888888888888888888876554 45
Q ss_pred HHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 225 EAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMM 304 (721)
Q Consensus 225 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 304 (721)
.|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004976 305 ERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ 359 (721)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (721)
+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777766666654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.8e-21 Score=190.50 Aligned_cols=330 Identities=14% Similarity=0.058 Sum_probs=218.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 312 VVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMG 391 (721)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (721)
+..+..++..+...|++++|+..++++++.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455556666666666666666666666542 3355566666666666666666666666665542 2244555556666
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004976 392 IGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIID 471 (721)
Q Consensus 392 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (721)
+...|++++|...+++++...+....+...+..+...+. ...+..++..+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 666666666666666665422100011222222211000 011223356677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 472 KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIR 551 (721)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 551 (721)
+|+..++++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|...|+++.
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888776543 66777777788888888888888888877763 3356677778888888888888888888877
Q ss_pred HcCCCCCHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHhHHHH
Q 004976 552 NANCEPDVVSFN------------TMINGTLKAGDLQSARELYNNMLQMGLPPDA----LTYSTLIHRFLRFGLLSDAKS 615 (721)
Q Consensus 552 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 615 (721)
+... .+...+. .++..+...|++++|...++++.+.. +.+. ..+..++.++...|++++|.+
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7541 2222222 33667888999999999999998853 2233 235567888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 616 VYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
.++++++.. +.+..++..++.++...|++++|...++++++ +.|+.......+..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 999998864 66888999999999999999999999999998 77876555544443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.6e-19 Score=188.91 Aligned_cols=352 Identities=14% Similarity=0.024 Sum_probs=180.5
Q ss_pred CccchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 004976 241 DVVVYSALISGFCS----NGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCK----IGQWKEAIAMLDAMMERGIRPDV 312 (721)
Q Consensus 241 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 312 (721)
+..++..+...|.. .+++++|...|++..+.| +...+..++..|.. .+++++|+..|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 444455555555444432 33344444444444 445555555555444432 33
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHH
Q 004976 313 VTYTCLIEGLCK----GGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQ----KGLVGEAYEILNMMIEKGMMPDVVS 384 (721)
Q Consensus 313 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (721)
.++..+...|.. .+++++|...|++..+.+ +...+..++..|.. .+++++|+..|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444444444444 445555555555544432 23444444444444 445555555555555432 3444
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhh
Q 004976 385 YNTLLMGIGK----FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK----EDRLDEAVKIYHTMAERGISGNLVT 456 (721)
Q Consensus 385 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 456 (721)
+..+...+.. .++.++|.++|+++.+. .+...+..+..+|.. .+++++|..+|++..+.+ +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 4445544444 45555555555555542 133444455555543 455555555555555443 3444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhH
Q 004976 457 FNILIGKYLT----AGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKI-----GMLNIAKGIFSKMRVSGNDPTLFDY 527 (721)
Q Consensus 457 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~ 527 (721)
+..+...|.. .+++++|+..|+++.+.+ +...+..+...+... +++++|...++++.+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 4455555554 555666666666655432 344445555555544 56666666666655543 33445
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 004976 528 NALMASLCKES---SLEQAKRLFIEIRNANCEPDVVSFNTMINGTLK----AGDLQSARELYNNMLQMGLPPDALTYSTL 600 (721)
Q Consensus 528 ~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 600 (721)
..++..|...| ++++|+++|+++.+.+ +...+..++..|.. .+++++|..+|+++.+.+ +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 55555555444 5566666666666532 44555566666655 566666666666666543 34555566
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCC
Q 004976 601 IHRFLR----FGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 601 ~~~~~~----~g~~~~A~~~~~~~~~~~ 624 (721)
+.+|.. .+++++|...|+++.+.+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 666655 566666666666666553
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.7e-19 Score=188.75 Aligned_cols=366 Identities=13% Similarity=0.043 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVR----SKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ----TQKPKF 120 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 120 (721)
..++..++++...+ +...+..++..+.. .+++++|+.+|+++... .+..++..++..+.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44566777766644 77888889998888 88999999999999875 356778888888888 888999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 004976 121 ALGVIGLILKRGFVVNIYAFNLILKGFCR----KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK----AKRFKEAL 192 (721)
Q Consensus 121 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 192 (721)
|..+|+++.+.+ ++.++..+...|.. .+++++|+..|++..+.| +..++..+..+|.. .+++++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999888764 56777778888877 788888888888888765 56677777777776 67888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHh----cCChhHHHHH
Q 004976 193 DILPDMEAVGCCPNLITYSTLMDGLCK----DGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCS----NGSFDKGKKL 264 (721)
Q Consensus 193 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 264 (721)
++|++....+ +...+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887754 56677777777776 778888888888877754 55667777777765 6777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CChHHHHHHH
Q 004976 265 FDDMLEKGISPNVVTYNSLMHCLCK----IGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG-----GRATKAIDLL 335 (721)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~ 335 (721)
|++..+.+ +...+..+..++.. .+++++|+..|++..+.| +..++..+...+... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77777653 45566666666666 677777777777766542 455566666666665 6666777666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHH
Q 004976 336 NWMVKKGEKLSVITYNVLIKGLCQKG---LVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGK----FGKVDEALELFNLV 408 (721)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 408 (721)
++..+.+ +...+..++..|...| ++++|+..|++..+.+ ++..+..+..++.. .+++++|..+|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6666653 3345555555555544 5566666666666542 45555555555555 55566666666665
Q ss_pred HhcCCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 004976 409 LKEEKYVQLDVVTYNNLIQGLCK----EDRLDEAVKIYHTMAERG 449 (721)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 449 (721)
.+. .+...+..+..+|.. .+++++|...|+++.+.+
T Consensus 394 ~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQ-----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 542 134455555555554 455555555555555543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.5e-20 Score=188.82 Aligned_cols=331 Identities=12% Similarity=0.086 Sum_probs=245.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIK 355 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (721)
++..+..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++++.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999999863 3357889999999999999999999999999873 447789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh
Q 004976 356 GLCQKGLVGEAYEILNMMIEKGMMP----DVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK 431 (721)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (721)
++...|++++|+..++++.+. .| +...+..+..... ...+..++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 999999999999999999985 34 3333433321110 1123334555666
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004976 432 EDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGI 511 (721)
Q Consensus 432 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (721)
.|++++|+..++++.+.. +.+...+..++..+...|++++|...++++++..+. +...+..++..+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766654 455666667777777777777777777777765433 566667777777777777777777
Q ss_pred HHHHHHcCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCH
Q 004976 512 FSKMRVSGNDPTLFDYN------------ALMASLCKESSLEQAKRLFIEIRNANCEPDV----VSFNTMINGTLKAGDL 575 (721)
Q Consensus 512 ~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 575 (721)
++++.+..+. +...+. .++..+.+.|++++|...++++...... +. ..+..++.++...|++
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 7777665322 222222 3366788899999999999998885422 22 2355678889999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004976 576 QSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (721)
++|+..++++.+.. +.+..++..++.++...|++++|.+.|+++++.. |.+...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 99999999998853 4567888999999999999999999999999874 5567777777666543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.4e-17 Score=180.65 Aligned_cols=402 Identities=11% Similarity=0.065 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004976 48 YAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHI--FPSFLSLSGLIEVFVQTQKPKFALGVI 125 (721)
Q Consensus 48 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 125 (721)
+++-+.-+..+.......+++--...+.+|...|++.+|++++++++-.+. ..+......++.+..+. +.....++.
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 333333333333333223333334445555555555555555555552210 01223333344444443 223333333
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004976 126 GLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCP 205 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 205 (721)
...-.. ....++..+...|.+++|..+|++... .....+.+ +...+++++|.+++++. .
T Consensus 1045 ~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n 1103 (1630)
T 1xi4_A 1045 NRLDNY-------DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------N 1103 (1630)
T ss_pred HHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------C
Confidence 332110 122244555555555555555555321 11111112 11445555555555433 1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 004976 206 NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMH 285 (721)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 285 (721)
+..+|..++.++...|++++|+..|.+. .|...|..++.++.+.|++++|.+.|....+.. ++......++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 3444555555555555555555555432 144455555555555555555555555554432 22222223555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 004976 286 CLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGE 365 (721)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (721)
+|.+.+++++...+ ++ .++...+..++..+...|++++|..+|..+ ..|..++..+.+.|++++
T Consensus 1176 aYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 55555555432222 11 123344445555555555555555555543 245555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 366 AYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTM 445 (721)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 445 (721)
|++.+++. .+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-------v~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-------cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544 134455555555555555555554443321 13334445555555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 004976 446 AERGISGNLVTFNILIGKYLTA--GIIDKALEMWKHLLELGH----VPNSVTYSSMIDGFCKIGMLNIAK 509 (721)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 509 (721)
+... +-....|..+...|.+- ++..++++.|..-..... -.+...|..++..|.+.|+++.|.
T Consensus 1307 L~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1307 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4433 22333443444443332 223333333332221100 013344555555555555555554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.9e-17 Score=178.23 Aligned_cols=410 Identities=14% Similarity=0.158 Sum_probs=279.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 004976 100 PSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF--VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNT 177 (721)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.++.-....++++...|.+.+|++++++++..+. ..+....+.++....+. +..+.....++.... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 4555567778888888888888888888873321 14556666677666666 445555555554422 1 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 178 IVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 178 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..++.++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 66777888888888888887531 1222222222 6678888888887551 56778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004976 258 FDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNW 337 (721)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 337 (721)
+++|...|.+. .|...|..++.++.+.|++++|++.|....+.. +++.....++.+|.+.+++++...+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 88888888664 267778888888888888888888888777653 3333344578888888887754333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC
Q 004976 338 MVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL 417 (721)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 417 (721)
+. .++...+..++..+...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++.
T Consensus 1190 -I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------- 1248 (1630)
T 1xi4_A 1190 -IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------- 1248 (1630)
T ss_pred -Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--------
Confidence 22 235566667888888888888888888874 367788888888888888888888762
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMID 497 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 497 (721)
+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... ......|..+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 5578888888888888888888766543 3356667788888888888888888888887665 235556666666
Q ss_pred HHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHH--------H-----HHHHHHHcCCC
Q 004976 498 GFCKI--GMLNIAKGIFSKMRVSGNDP------TLFDYNALMASLCKESSLEQAK--------R-----LFIEIRNANCE 556 (721)
Q Consensus 498 ~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~--------~-----~~~~~~~~~~~ 556 (721)
.+++. ++..++.+.|..-... ++ +...|..+...|.+.|+++.|. . .|...+.. .
T Consensus 1323 LyaKy~peklmEhlk~f~~rini--~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v 1398 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNI--PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--V 1398 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhccc--chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--c
Confidence 66543 3455555555543321 21 3567888888888888888887 2 23333321 2
Q ss_pred CCHHHHHHHHHHHHcCC
Q 004976 557 PDVVSFNTMINGTLKAG 573 (721)
Q Consensus 557 ~~~~~~~~l~~~~~~~g 573 (721)
.+...|...+.-|....
T Consensus 1399 ~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 45556666665555444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3e-20 Score=184.16 Aligned_cols=293 Identities=13% Similarity=0.093 Sum_probs=203.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 004976 381 DVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNIL 460 (721)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 460 (721)
+...+...+..+...|++++|++++++++...+ .+...+..++.++...|++++|...++++.+.. +.+...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP---FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 444555666666666777777777777766433 244555666667777777777777777777654 4566777777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004976 461 IGKYLTAG-IIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESS 539 (721)
Q Consensus 461 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 539 (721)
+..+...| ++++|...++++++..+. +...+..++.++...|++++|...++++.+..+. +...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777777 777788877777776543 5666777777777788888888888777776422 34556667777778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCHh
Q 004976 540 LEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMG--------LPPDALTYSTLIHRFLRFGLLS 611 (721)
Q Consensus 540 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 611 (721)
+++|...++++.... +.+...+..++..+...|++++|+..++++.+.. .+....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888877754 2355677777788888888888888888777631 1333467778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCchhhH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELT-STILVCLCNISEDLDV 683 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~ 683 (721)
+|++.++++++.. +.+...+..++.++...|++++|...++++++ +.|+.... ..+..++....|+.++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchhc
Confidence 8888888887764 55677788888888888888888888888877 66654443 3444444344554443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.3e-20 Score=183.86 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+..++..++..+...|++++|+.+|++++..+ |.+...+..++.++...|++++|...++.+++.. +.++.++..++.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55667778888888888888888888888775 5666777777888888888888888888888764 346777888888
Q ss_pred HHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 004976 146 GFCRKG-EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVD 224 (721)
Q Consensus 146 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 224 (721)
.+...| ++++|...|+++.+.. +.+...|..+..++...|++++|+..++++.... +.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 888888 8888888888888764 4456677888888888888888888888887754 334556666777888888888
Q ss_pred HHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCCcchHHHHHHHHHhcCCHHHH
Q 004976 225 EAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG--------ISPNVVTYNSLMHCLCKIGQWKEA 296 (721)
Q Consensus 225 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A 296 (721)
+|...++++.+..+. +..++..++.++...|++++|...++++.+.. .+....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888776433 66777777888888888888888887777531 122345667777777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 297 IAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL 357 (721)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (721)
+..++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++.++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 77777776642 2245566667777777777777777777766552 33555666666555
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.3e-18 Score=183.88 Aligned_cols=427 Identities=10% Similarity=0.049 Sum_probs=288.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004976 55 FQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV 134 (721)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 134 (721)
|++++..+|. +..+|..++. +.+.|++++|+.+|++++... |.+...|...+..+.+.|+++.|..+|+++++..
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 5667776655 8889999888 477899999999999999874 7788889999999999999999999999998764
Q ss_pred cCHHhHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004976 135 VNIYAFNLILKGF-CRKGEVNKAIE----LFGEIKSN-GVS-PDNCSYNTIVNGLCK---------AKRFKEALDILPDM 198 (721)
Q Consensus 135 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 198 (721)
|+...|...+... ...|+++.|.+ +|+++++. |.. ++...|...+....+ .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 3677777776533 45677777665 77766543 333 345677777766554 67888999999888
Q ss_pred HhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHH------H
Q 004976 199 EAVGCCPNL---ITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDM------L 269 (721)
Q Consensus 199 ~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~ 269 (721)
... |.. ..|..........|. ..+..++. ...+++..|..++... .
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 873 332 233322221111110 00101100 0123445555554442 2
Q ss_pred hCC---CCCC--------cchHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh------
Q 004976 270 EKG---ISPN--------VVTYNSLMHCLCKI----GQW----KEAIAMLDAMMERGIRPDVVTYTCLIEGLCK------ 324 (721)
Q Consensus 270 ~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 324 (721)
+.. ++|+ ...|...+...... ++. ..+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 211 2332 12444444332221 222 36777888877752 3357777777777765
Q ss_pred -cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhc
Q 004976 325 -GGRAT-------KAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMP-DV-VSYNTLLMGIGK 394 (721)
Q Consensus 325 -~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~ 394 (721)
.|+++ +|..++++.++.-.|.+...|..++..+.+.|++++|..+|+++++. .| +. ..|...+..+.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68876 88888888886324556788888888888889999999999988885 33 33 478888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 395 FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQG-LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKA 473 (721)
Q Consensus 395 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 473 (721)
.|+.++|+.+|+++++..+ .+...+...+.. +...|++++|..+|+++++.. |.++..|..++..+...|+.++|
T Consensus 369 ~~~~~~A~~~~~~Al~~~~---~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDAR---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTT---CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHH
T ss_pred hcCHHHHHHHHHHHHhccC---CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhH
Confidence 8889999999999887432 123333332222 335788999999999888764 55678888888888889999999
Q ss_pred HHHHHHHHHcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 474 LEMWKHLLELGHV-P--NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 474 ~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
..+|++++...+. | ....|...+......|+.+.+..+++++.+.
T Consensus 445 r~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 445 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999886432 2 2447777777778889999999999888776
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=5.9e-19 Score=186.60 Aligned_cols=430 Identities=12% Similarity=0.072 Sum_probs=280.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004976 195 LPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGIS 274 (721)
Q Consensus 195 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 274 (721)
|++.+... +-+...|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444443 346678888887 467889999999999988864 337778888888888899999999999998876 3
Q ss_pred CCcchHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 004976 275 PNVVTYNSLMHCL-CKIGQWKEAIA----MLDAMMER-GIRP-DVVTYTCLIEGLCK---------GGRATKAIDLLNWM 338 (721)
Q Consensus 275 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 338 (721)
|+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5766777666533 34567666655 66666542 4333 34566666665544 57788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH------HhcC
Q 004976 339 VKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLV------LKEE 412 (721)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~ 412 (721)
++.........|..........|. .+...++ ....+++..|..++... ++..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l--~~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMI--EDRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111111223222211111110 0000000 01233455565555542 2110
Q ss_pred -CCCCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cC
Q 004976 413 -KYVQLD--------VVTYNNLIQGLCKE----DRL----DEAVKIYHTMAERGISGNLVTFNILIGKYLT-------AG 468 (721)
Q Consensus 413 -~~~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 468 (721)
..++|+ ...|...+...... ++. +.+..+|++++... |.++..|..++..+.. .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 001222 13344443322221 222 36777888887764 5677888888887765 68
Q ss_pred CHH-------HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h-hhHHHHHHHHHhcC
Q 004976 469 IID-------KALEMWKHLLE-LGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT-L-FDYNALMASLCKES 538 (721)
Q Consensus 469 ~~~-------~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~ 538 (721)
+++ +|..+++++++ ..+ .+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc
Confidence 876 88889988886 333 36778888888888889999999999998886 333 2 47888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 004976 539 SLEQAKRLFIEIRNANCEPDVVSFNTMING-TLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVY 617 (721)
Q Consensus 539 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (721)
++++|+.+|+++++.. +.+...+...+.. +...|+.++|..+|+++++.. +.+...|..++..+...|+.++|+.+|
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 8999999999888743 1223333333322 335888999999999888853 445778888888888889999999999
Q ss_pred HHHHHCC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 618 QKMVASG-HKP--NACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 618 ~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
++++..+ ..| ....|..++......|+.+.+..+.+++.+
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988863 122 244788888888888999999999888887
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=8.5e-20 Score=183.96 Aligned_cols=263 Identities=14% Similarity=0.012 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 105 LSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK 184 (721)
Q Consensus 105 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (721)
+..++..+...|++++|...++.+++.. +.+..++..++..+...|++++|+..|+++.+.+ +.+..++..++.+|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444442 2234444444444444444444444444444432 2234444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHH----------------HHHHHHHhcCChhHHHHHHHHHhHCCCCC-CccchHH
Q 004976 185 AKRFKEALDILPDMEAVGCCPNLITYS----------------TLMDGLCKDGRVDEAMGLLEEMKAKGLDA-DVVVYSA 247 (721)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~p~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 247 (721)
.|++++|+..++++.... +.+...+. .+... ...|++++|...++++.+..+.. +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 444444444444444432 11111111 12222 25666666666666666553321 3556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004976 248 LISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGR 327 (721)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (721)
++.++...|++++|...|++++... +.+..++..++.++...|++++|+..|+++.+.. +.+..++..++.++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 6666666666666666666666552 2245566666666666677777777666666542 2235566666666666777
Q ss_pred hHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 004976 328 ATKAIDLLNWMVKKGEK----------LSVITYNVLIKGLCQKGLVGEAYEILNMM 373 (721)
Q Consensus 328 ~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 373 (721)
+++|...++++....+. ....+|..++.++...|++++|..++++.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 77777766666654211 11566777777777777777777666543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.5e-18 Score=177.01 Aligned_cols=388 Identities=13% Similarity=-0.035 Sum_probs=244.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--
Q 004976 63 RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV--------HIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG-- 132 (721)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 132 (721)
......+|+.++.++...|++++|++.|++++.. ..+....+|..++.++...|++++|...++++++..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3456788999999999999999999999998763 123345678899999999999999999999887431
Q ss_pred -----CCcCHHhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC
Q 004976 133 -----FVVNIYAFNLILKGFCRK--GEVNKAIELFGEIKSNGVSPDNCSYNTIVNG---LCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 133 -----~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 202 (721)
....+.++...+.++... +++++|+..|+++++.+ |.+...+..+..+ +...++.++|++.+++....+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 112345666666555554 56999999999999874 4455566655555 345677888999999888764
Q ss_pred CCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 004976 203 CCPNLITYSTLMDGLCK----DGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVV 278 (721)
Q Consensus 203 ~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 278 (721)
+.+..++..+...+.. .+++++|.+.++++....+. +..++..++..|...|++++|...|+++.+.. +.+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 3455566666655544 46788999999999887544 77888999999999999999999999999873 22456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 279 TYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLC 358 (721)
Q Consensus 279 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (721)
++..++.+|...+.... .. ............+..+.|...++...... +.+...+..++..+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 67777766643211110 00 00000001111223566777777776653 335566777777788
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCCh
Q 004976 359 QKGLVGEAYEILNMMIEKGMMPDVV--SYNTLLM-GIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRL 435 (721)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (721)
..|++++|+..|+++++....+... .+..+.. .....|+.++|+..|.++++..+ +..... +..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~~---------~~~ 412 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREKE---------KMK 412 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHHH---------HHH
Confidence 8888888888888777653322111 1222222 23456778888888888777432 222111 122
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004976 436 DEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGH 485 (721)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 485 (721)
..+..++++....+ |.++.++..++.+|...|++++|++.|+++++.+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33445555655554 56777888888888888888888888888887654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.2e-18 Score=178.78 Aligned_cols=382 Identities=10% Similarity=-0.023 Sum_probs=227.2
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 004976 241 DVVVYSALISGFCSNGSFDKGKKLFDDMLEK-----G--ISP-NVVTYNSLMHCLCKIGQWKEAIAMLDAMMERG----- 307 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 307 (721)
....|+.|+.++...|++++|++.|++.++. + ..| ...+|..++.+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777888888888888888888877642 0 112 24467777778888888888888777765420
Q ss_pred -CCC-ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHCCCCC
Q 004976 308 -IRP-DVVTYTCLIEGLCK--GGRATKAIDLLNWMVKKGEKLSVITYNVLIKGL---CQKGLVGEAYEILNMMIEKGMMP 380 (721)
Q Consensus 308 -~~~-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 380 (721)
..+ ...++.....++.. .+++++|+..|+++++.. |.++..+..++.++ ...++.++|++.+++.++.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011 13344444444443 345777777777777653 33455555544443 33456666777777666643 22
Q ss_pred CHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 004976 381 DVVSYNTLLMGIGK----FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVT 456 (721)
Q Consensus 381 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 456 (721)
+...+..+...+.. .++.++|.+.++++....+ ....++..++..|...|++++|+..++++.+.. |.+..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 44555555544443 2455667777776665433 345566666677777777777777777766653 445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004976 457 FNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK 536 (721)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (721)
+..++.+|...+....+ .. . ..........+.++.|...++++.+.. +.+...+..++..+..
T Consensus 284 ~~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 55555554322111000 00 0 000001112234678888898888774 3356788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 004976 537 ESSLEQAKRLFIEIRNANCEPDVV--SFNTMIN-GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDA 613 (721)
Q Consensus 537 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 613 (721)
.|++++|+..|++++.....+... .+..++. .....|++++|+..|+++++ +.|+...... ....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHH
Confidence 999999999999999865333221 2333443 34578999999999999998 4565433222 23445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 614 KSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+++++.+..+ |.++.+|..++.+|...|++++|++.|+++++
T Consensus 416 ~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 416 QKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777777764 67888999999999999999999999999998
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=5.7e-19 Score=177.87 Aligned_cols=283 Identities=14% Similarity=0.073 Sum_probs=178.3
Q ss_pred cCCHHHHHH-HHHHHHhcCCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 395 FGKVDEALE-LFNLVLKEEKYVQ-LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDK 472 (721)
Q Consensus 395 ~~~~~~A~~-~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (721)
.|++++|+. .+++++...+..+ .+...+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6665544322211 124456667777777777777777777777664 4566667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----------------HHHHHHHh
Q 004976 473 ALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYN----------------ALMASLCK 536 (721)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 536 (721)
|+..++++++..+. +...+..++.++...|++++|...++++....+. +...+. .+...+ .
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 77777777766543 5666777777777777777777777777765322 111111 233333 6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 004976 537 ESSLEQAKRLFIEIRNANCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKS 615 (721)
Q Consensus 537 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 615 (721)
.|++++|+..|+++....... +..++..++.++...|++++|+..++++++.. +.+..++..++.++...|++++|++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777778888877777754211 35677777777777788888888887777753 4446677777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHhcCchhhH
Q 004976 616 VYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD------------QELTSTILVCLCNISEDLDV 683 (721)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~ll~~~~~~~~~~~~ 683 (721)
.++++++.. +.+...+..++.++.+.|++++|...++++++ +.|+ ...+..+..++...++..++
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 888777753 55677777777778788888888888877776 3332 35555555555554444444
Q ss_pred hh
Q 004976 684 AK 685 (721)
Q Consensus 684 ~~ 685 (721)
..
T Consensus 350 ~~ 351 (368)
T 1fch_A 350 GA 351 (368)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=6.1e-19 Score=177.35 Aligned_cols=234 Identities=8% Similarity=0.011 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...+..++..+.+.|++++|+.+|++++... |.+..++..++.++...|++++|...|+++++.+ +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777777777777777777777764 5666777777777777777777777777777664 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHH----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYN----------TIVNGLCKAKRFKEALDILPDMEAVGCCP--NLITYSTL 213 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l 213 (721)
.|...|++++|+..|+++.+.+ +.+...+. .+..++...|++++|+.+|+++.... +. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 7777777777777777776642 11122222 23555666666666666666666543 11 35556666
Q ss_pred HHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 004976 214 MDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQW 293 (721)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 293 (721)
+..+...|++++|+..++++.+..+. +..++..++.+|...|++++|...|+++++.. +.+..++..++.++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 66666666666666666666655333 55566666666666666666666666666542 22345566666666666666
Q ss_pred HHHHHHHHHHHH
Q 004976 294 KEAIAMLDAMME 305 (721)
Q Consensus 294 ~~A~~~~~~~~~ 305 (721)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.2e-18 Score=173.31 Aligned_cols=235 Identities=14% Similarity=0.022 Sum_probs=180.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMID 497 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 497 (721)
+...+..++..+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|+..|+++++..+. +...+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34457777888888888888888888887764 557778888888888888888888888888877543 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTL----------FDYNALMASLCKESSLEQAKRLFIEIRNANCE-PDVVSFNTMI 566 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 566 (721)
++...|++++|...++++.+..+. +. ..+..++..+...|++++|+.+|++++..... ++..++..++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888888765321 11 22334577888889999999999998886422 1567888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChh
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETE 646 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 646 (721)
..+...|++++|+..++++++.. +.+..+|..++.+|...|++++|++.|+++++.. +.+..++..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 88999999999999999988863 5567788889999999999999999999988864 566888889999999999999
Q ss_pred HHHHHHHHHHH
Q 004976 647 EVFDLIHEMAD 657 (721)
Q Consensus 647 ~A~~~~~~~~~ 657 (721)
+|...++++++
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.1e-19 Score=173.77 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=130.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
..|++++|.+++++.. ...+|..++.++.+.|++++|++.|.++ ++...+..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4568999999999982 3458999999999999999999999763 466688999999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004976 124 VIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC 203 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 203 (721)
+++.+.+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88888764 3457788899999999999999888874 367779999999999999999999999866
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 004976 204 CPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSL 283 (721)
Q Consensus 204 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 283 (721)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 35889999999999999999999988 178899999999999999999966555422 233445568
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 004976 284 MHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKG--GRATKAIDLLNWMVKKGEKL------SVITYNVLIK 355 (721)
Q Consensus 284 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 355 (721)
+..|.+.|.+++|+.+++..+... +-....|..+...|++- ++..+.++.|..-+ ++++ +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988653 23456677777666654 34444444443221 2232 4567888889
Q ss_pred HHHhcCCHhHHHHH
Q 004976 356 GLCQKGLVGEAYEI 369 (721)
Q Consensus 356 ~~~~~~~~~~a~~~ 369 (721)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=2e-18 Score=170.74 Aligned_cols=232 Identities=9% Similarity=-0.003 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGF 147 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (721)
..+..++..+...|++++|+.+|++++... |.+...+..++.++...|++++|...++.+++.. +.+..++..++..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345566666666666666666666666654 4555566666666666666666666666666553 33556666666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTI--------------VN-GLCKAKRFKEALDILPDMEAVGCCPNLITYST 212 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 212 (721)
...|++++|+..++++.+.. +.+...+..+ .. ++...|++++|...++++.... +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 66677777777776666653 2222233222 11 2444455555555555554432 223444455
Q ss_pred HHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 004976 213 LMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQ 292 (721)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (721)
++..+...|++++|...++++.+..+. +..++..++.++...|++++|...|+++.+.. +.+..++..++.++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 555555555555555555555444222 34445555555555555555555555554432 1233444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 004976 293 WKEAIAMLDAMME 305 (721)
Q Consensus 293 ~~~A~~~~~~~~~ 305 (721)
+++|...++++..
T Consensus 256 ~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 256 YDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=6.3e-18 Score=167.10 Aligned_cols=278 Identities=9% Similarity=-0.030 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH
Q 004976 349 TYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQG 428 (721)
Q Consensus 349 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (721)
.+..++..+...|++++|+.+++++.+.. +.+...+..++.++...|++++|...+++++...+ .+..++..++.+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHH
Confidence 34455555666666666666666655542 22444555555555555555555555555554322 234445555555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 004976 429 LCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSM-ID-GFCKIGMLN 506 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 506 (721)
+...|++++|...++++.+.. +.+...+..+.... ++......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 555555555555555555442 21222221110000 001111112 22 256677788
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004976 507 IAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNML 586 (721)
Q Consensus 507 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 586 (721)
+|...++++.+..+ .+...+..++..+...|++++|...++++.... +.+...+..++..+...|++++|+..++++.
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888777642 256777778888888888888888888887754 2356677888888888888888888888887
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHcCCChhHHHHHHHH
Q 004976 587 QMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKP------------NACVYDSLLKGFSSQGETEEVFDLIHE 654 (721)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 654 (721)
+.. +.+..++..++.++...|++++|.+.+++++... +. +...|..++.++...|++++|..++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 753 4456778888888888888888888888887753 22 467788888888888888888888776
Q ss_pred HHH
Q 004976 655 MAD 657 (721)
Q Consensus 655 ~~~ 657 (721)
.++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 543
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.7e-17 Score=161.56 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=101.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 004976 78 VRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAI 157 (721)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 157 (721)
-+.|++++|.++++++ +.+.+|..++.++.+.|++.+|++.|.++ +++..|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4567899999999988 22358999999999999999999999654 36668888888999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCC
Q 004976 158 ELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKG 237 (721)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 237 (721)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567788889999999999999887774 367779999999999999999999999866
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004976 238 LDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTC 317 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (721)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 36889999999999999999999988 177889999999999999999966554422 23444556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004976 318 LIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQK 360 (721)
Q Consensus 318 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (721)
++..|.+.|++++|..+++..+... +.....|..+..+|++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 7788888889999988888888664 55677777777776654
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=6.6e-17 Score=155.11 Aligned_cols=257 Identities=11% Similarity=0.063 Sum_probs=173.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 004976 393 GKFGKVDEALELFNLVLKEEKYVQLD--VVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGII 470 (721)
Q Consensus 393 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (721)
...|++..|+..++.... ..|+ ......+..+|...|+++.|+..++. . -+|+..++..++..+...++.
T Consensus 10 ~~~g~y~~ai~~~~~~~~----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHhccc----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345666777666655432 1122 22344556677777777777765543 1 245566666777777777777
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004976 471 DKALEMWKHLLELGHVP-NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIE 549 (721)
Q Consensus 471 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 549 (721)
++|++.+++++..+..| +...+..++.++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777654323 455666667777777888888777766 34566777777777888888888888888
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 004976 550 IRNANCEPDVVSF---NTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHK 626 (721)
Q Consensus 550 ~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (721)
+...+ |+.... ..++..+...|++++|..+|+++.+.. +.+...++.++.++...|++++|++.++++++.. |
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 77754 443211 112233445577888888888888763 5667777888888888888888888888888764 6
Q ss_pred CCHHHHHHHHHHHHcCCChhH-HHHHHHHHHHcCCCCCHHHHHH
Q 004976 627 PNACVYDSLLKGFSSQGETEE-VFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
.++.++..++.++...|+.++ +.++++++++ +.|++.....
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d 273 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE 273 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 677788888888888888765 4677788877 6776665443
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=4.9e-17 Score=166.93 Aligned_cols=219 Identities=13% Similarity=0.019 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004976 421 TYNNLIQGLCKED---RLDEAVKIYHTMAERGISGNLVTFNILIGKYLTA----GIIDKALEMWKHLLELGHVPNSVTYS 493 (721)
Q Consensus 421 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 493 (721)
.+..+..+|...| ++++|+..|++..+.+ +++...+..+...|... +++++|+..|+++. . .+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5555666666666 6666666666666655 44444445555555433 56666666666665 2 2444555
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 494 SMIDG-F--CKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKES-----SLEQAKRLFIEIRNANCEPDVVSFNTM 565 (721)
Q Consensus 494 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 565 (721)
.+... + ...+++++|...|++..+.| +...+..++.+|. .| ++++|+.+|+++. . .+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 55554 2 34566666666666666554 4455555665555 33 6777777776666 2 245566666
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 566 INGTLK----AGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLR----FGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 566 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+..|.. ..++++|..+|++..+.| +......|+.+|.. ..+..+|...|+++.+.| .++.......+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~ 400 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLE 400 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 666654 336777777777776654 23444556655543 346777777777776655 222222222222
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 004976 638 GFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~ 656 (721)
.....++..+|..+.++..
T Consensus 401 ~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 401 APLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHH
Confidence 2222334555555555544
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=5.6e-17 Score=155.63 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=125.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhH
Q 004976 76 ALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNK 155 (721)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 155 (721)
..+..|++++|+..+++....+..........+++++...|+++.|+..++.. .+++..++..++..+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34445555555555555433221111123344555555555555555544321 23344455555555555555666
Q ss_pred HHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004976 156 AIELFGEIKSNGV-SPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMK 234 (721)
Q Consensus 156 A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 234 (721)
|++.++++...+. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666665554432 22334444455555556666666655554 2344555555555556666666666666555
Q ss_pred HCCCCCCccchHH----HHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004976 235 AKGLDADVVVYSA----LISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRP 310 (721)
Q Consensus 235 ~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 310 (721)
+.. |+.. ... ++..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...|+++++.. +.
T Consensus 158 ~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 158 DQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 543 2211 111 1222333455666666666655542 3344555555555666666666666666555542 11
Q ss_pred ChhhHHHHHHHHHhcCChHH-HHHHHHHHHHC
Q 004976 311 DVVTYTCLIEGLCKGGRATK-AIDLLNWMVKK 341 (721)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 341 (721)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34555555555555555543 34555555544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=5.6e-17 Score=166.49 Aligned_cols=347 Identities=14% Similarity=0.048 Sum_probs=178.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKP---KFALGVIGLILKRGFVVNIYAFNLILKGFC 148 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (721)
.++..+.+.|++++|+++|+++...+ +..++..++..+...|+. ++|..+|+++.+. ++.++..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677777888888888888877654 344455566666666766 7777777777643 5556666666555
Q ss_pred hcC-----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004976 149 RKG-----EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFK---EALDILPDMEAVGCCPNLITYSTLMDGLCKD 220 (721)
Q Consensus 149 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 220 (721)
..+ ++++|+..|++..+.| +..++..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 544 6677888888777765 3336666666666554433 3444444444332 344555566666666
Q ss_pred CChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CCH
Q 004976 221 GRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNG---SFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKI----GQW 293 (721)
Q Consensus 221 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 293 (721)
+.++++....+.+.+.-...+..++..|+.+|...| +.++|...|++..+.| +++...+..++.+|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 644444433222222111223346666777776666 6677777777776665 22333335566655443 566
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHhH
Q 004976 294 KEAIAMLDAMMERGIRPDVVTYTCLIEG-L--CKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKG-----LVGE 365 (721)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 365 (721)
++|+..|++.. . -++.++..+... + ...+++++|...|++..+.| +...+..++..|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 66776666665 2 245555555555 2 34566666666666666554 4455555555555 33 5666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHh----cCChhH
Q 004976 366 AYEILNMMIEKGMMPDVVSYNTLLMGIGK----FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCK----EDRLDE 437 (721)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 437 (721)
|+..|++.. . -++.....+..+|.. ..+.++|..+|+++.+. + +......+..+|.. ..++++
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--G---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--T---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--C---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 666666555 2 244555555555443 23555566666555542 1 33344455554443 234555
Q ss_pred HHHHHHHHHHCC
Q 004976 438 AVKIYHTMAERG 449 (721)
Q Consensus 438 A~~~~~~~~~~~ 449 (721)
|..+|+...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 555555555544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-16 Score=150.60 Aligned_cols=238 Identities=14% Similarity=0.123 Sum_probs=188.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C----HHHH
Q 004976 419 VVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVP--N----SVTY 492 (721)
Q Consensus 419 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~ 492 (721)
...+..++..+...|++++|+..++++.+.. .+...+..++.++...|++++|+..++++++..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677777788888888888888877765 567778888888888888888888888877754321 1 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004976 493 SSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKA 572 (721)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 572 (721)
..++.++...|++++|...++++... .|+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888889999999998888876 3342 34666778899999999988854 22445788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 004976 573 GDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 573 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
|++++|+..++++++.. +.+..++..++.++...|++++|++.++++++.. +.+...|..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998864 5567888999999999999999999999999874 667889999999999999999999999
Q ss_pred HHHHHcCCC------CCHHHHHHHHH
Q 004976 653 HEMADKGVH------LDQELTSTILV 672 (721)
Q Consensus 653 ~~~~~~~~~------p~~~~~~~ll~ 672 (721)
+++++ +. |+.......+.
T Consensus 231 ~~a~~--~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 231 DAART--KDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHH--HHHHHHTTTTHHHHHHHHH
T ss_pred HHHHH--hChhhcCCCchHHHHHHHH
Confidence 99987 44 66655554443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.6e-16 Score=145.55 Aligned_cols=200 Identities=16% Similarity=0.070 Sum_probs=144.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNAL 530 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (721)
|+++..+..++..+...|++++|+..|+++++..+. +...+..++.++.+.|++++|+..++++++..+ .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 456666777777777777777777777777776544 666777777777777777777777777776632 245666777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004976 531 MASLCKE-----------SSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYST 599 (721)
Q Consensus 531 ~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 599 (721)
+.++... |++++|+..|+++++.+ +.+...+..++.++...|++++|+..|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 89999999999988865 2356688888999999999999999999998865 67788889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
++.++...|++++|+..|+++++.. |.+...+..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998874 6678888999999999999999999888765
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.1e-16 Score=146.83 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLIL 144 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 144 (721)
++...+..++..+.+.|++++|+..|+++++.+ |.+...+..++.++.+.|++++|...++++++.+ +.+..++..++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 356677778888888888888888888888775 6677777888888888888888888888887765 33667777777
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 145 KGFCRK-----------GEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTL 213 (721)
Q Consensus 145 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 213 (721)
..+... |++++|+..|+++++.+ |.+...+..+..++...|++++|+..|++..... .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 77777777777766653 3345566666666677777777777777766655 455666666
Q ss_pred HHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 004976 214 MDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDM 268 (721)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 268 (721)
+.++...|++++|+..|+++++..+. +..++..++.++...|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666667777777777666665433 5566666666666666666666666654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=7.7e-16 Score=147.46 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 004976 420 VTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVP--NSVTYSSMID 497 (721)
Q Consensus 420 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 497 (721)
..+...+..+...|++++|+..++++.+.. +.+...+..++.++...|++++|+..++++++....+ ....+..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445666777778888888888888887764 4456677788888888888888888888887743211 2334778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQS 577 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 577 (721)
.+...|++++|+..++++.+..+ .+...+..++.++...|++++|+..|++++... +.+...+..++..+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887643 256778888888888899999988888888753 3355677777734444558999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHcCCChhH
Q 004976 578 ARELYNNMLQMGLPPDALTYSTLIHRFLRFGL---LSDAKSVYQKMVASG-HKPN------ACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 578 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 647 (721)
|+..++++++.. +.+...+..++.++...|+ +++|...++++++.. ..|+ ..+|..++..|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988853 4446777888888888888 888888888887641 1233 2577888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 648 VFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
|...++++++ +.|++......+...
T Consensus 240 A~~~~~~al~--~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHC--
T ss_pred HHHHHHHHHh--cCccHHHHHHHhhhh
Confidence 9999999998 778776666555543
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=5.1e-16 Score=153.86 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKN-YEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFAL 122 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 122 (721)
..|++++|++.|++++..+|. +..+|+.++.++.+.|+ +++|+..|++++..+ |.+..+|..++.++...|++++|+
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666666665544 55666666666666664 666666666666654 455556666666666666666666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHH
Q 004976 123 GVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK-AKRFKEA-----LDILP 196 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~ 196 (721)
..|+++++.++ .+..+|..++.++...|++++|+..|+++++.+ +.+..+|+.+..++.. .|..++| +..|+
T Consensus 187 ~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 187 EFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 66666665542 355566666666666666666666666666553 3345556666655555 3443444 35555
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcC---------ChhHHHHHH
Q 004976 197 DMEAVGCCPNLITYSTLMDGLCKDG--RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNG---------SFDKGKKLF 265 (721)
Q Consensus 197 ~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~ 265 (721)
+.+... +-+...|..+..++...| ++++|++.++++ +.. +.+..++..++.+|.+.| .+++|+++|
T Consensus 265 ~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 265 EMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 555442 223445555555555555 455555555555 222 224445555555555542 135555555
Q ss_pred HHH
Q 004976 266 DDM 268 (721)
Q Consensus 266 ~~~ 268 (721)
+++
T Consensus 342 ~~l 344 (382)
T 2h6f_A 342 EIL 344 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-15 Score=145.09 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHhH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN------IYAF 140 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 140 (721)
...|..++..+...|++++|+.+|++++... .+...+..++.++...|++++|...++.+++..+... ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5677888888888899999999998888876 6677888888888888888888888888876543221 5778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKD 220 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 220 (721)
..++..+...|++++|+..|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888888888888888888875 3442 34556677888888888877753 23445677777788888
Q ss_pred CChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004976 221 GRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAML 300 (721)
Q Consensus 221 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 300 (721)
|++++|...++++.+..+. +..++..++.++...|++++|...|+++++.. +.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888776443 66777778888888888888888888877763 234667777777777888888888777
Q ss_pred HHHHHC
Q 004976 301 DAMMER 306 (721)
Q Consensus 301 ~~~~~~ 306 (721)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.3e-15 Score=150.87 Aligned_cols=248 Identities=8% Similarity=0.024 Sum_probs=204.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 419 VVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGI-IDKALEMWKHLLELGHVPNSVTYSSMID 497 (721)
Q Consensus 419 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 497 (721)
..++..+..++...|++++|+..+++++... +.+...|..++.++...|+ +++|+..++++++..+. +...|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3567778888889999999999999998876 6678889999999999996 99999999999998765 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCHH
Q 004976 498 GFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLK-AGDLQ 576 (721)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 576 (721)
++...|++++|+..|+++++..+ .+...|..++.++...|++++|+..|++++..+ +.+...|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998853 367889999999999999999999999999866 2366789999999988 66657
Q ss_pred HH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC------
Q 004976 577 SA-----RELYNNMLQMGLPPDALTYSTLIHRFLRFG--LLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQG------ 643 (721)
Q Consensus 577 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 643 (721)
+| +..+++++... +.+...|..++.++...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58899998854 445678889999898888 689999999888 44 3667888999999998874
Q ss_pred --C-hhHHHHHHHHH-HHcCCCCCHHH-HHHHHHHHH
Q 004976 644 --E-TEEVFDLIHEM-ADKGVHLDQEL-TSTILVCLC 675 (721)
Q Consensus 644 --~-~~~A~~~~~~~-~~~~~~p~~~~-~~~ll~~~~ 675 (721)
+ +++|+++++++ .+ +.|.... |..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 58999999999 77 7786544 444444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=2e-15 Score=144.56 Aligned_cols=235 Identities=12% Similarity=0.064 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHhHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYAFNLILK 145 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 145 (721)
+.+...+..+...|++++|+..|++++..+ |.+...+..++.++...|++++|...++.+++.... ....++..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445666777777777777777777777764 455567777777777777777777777777763211 11234667777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
.+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..|++..... +.+...+..++..+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777653 4455677777777777777777777777776652 3345556666623334457777
Q ss_pred HHHHHHHHhHCCCCCCccchHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCCC------cchHHHHHHHHHhcCCHHH
Q 004976 226 AMGLLEEMKAKGLDADVVVYSALISGFCSNGS---FDKGKKLFDDMLEKG-ISPN------VVTYNSLMHCLCKIGQWKE 295 (721)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 295 (721)
|...|+++.+..+. +...+..++.++...|+ +++|...|+++.+.. ..|+ ..+|..++..+...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777765433 45666666777766666 666777777766531 0122 1355566666667777777
Q ss_pred HHHHHHHHHHC
Q 004976 296 AIAMLDAMMER 306 (721)
Q Consensus 296 A~~~~~~~~~~ 306 (721)
|...++++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777776664
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=3.8e-14 Score=135.51 Aligned_cols=223 Identities=14% Similarity=0.023 Sum_probs=175.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004976 418 DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLT----AGIIDKALEMWKHLLELGHVPNSVTYS 493 (721)
Q Consensus 418 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 493 (721)
+..++..++..+...|++++|+..|++..+. .+...+..++..|.. .+++++|+..|+++.+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777788888888888887773 356677777777877 888888888888887764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004976 494 SMIDGFCK----IGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK----ESSLEQAKRLFIEIRNANCEPDVVSFNTM 565 (721)
Q Consensus 494 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 565 (721)
.++..+.. .+++++|+..|++..+.+ +...+..++..|.. .+++++|+..|+++.+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888887 888888888888887763 56777788888888 888888888888888754 55667777
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 566 INGTLK----AGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLR----FGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 566 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+..|.. .+++++|+.+|+++.+.+ +...+..++.+|.. .+++++|++.++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888877 888888888888888753 45677788888888 888999999998888864 3667788888
Q ss_pred HHHc----CCChhHHHHHHHHHHHc
Q 004976 638 GFSS----QGETEEVFDLIHEMADK 658 (721)
Q Consensus 638 ~~~~----~g~~~~A~~~~~~~~~~ 658 (721)
+|.. .|++++|.++++++.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 8888 88899999999888873
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=2.7e-13 Score=143.30 Aligned_cols=456 Identities=10% Similarity=0.035 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC---hhHHHHHH
Q 004976 189 KEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS---FDKGKKLF 265 (721)
Q Consensus 189 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 265 (721)
.+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34455555555554 568889999999998889999999999999886 45578888888888888888 99999999
Q ss_pred HHHHhCC-CCCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-hhhHHHHHHHHHh---------
Q 004976 266 DDMLEKG-ISPNVVTYNSLMHCLCKIGQW--------KEAIAMLDAMME-RGI-RPD-VVTYTCLIEGLCK--------- 324 (721)
Q Consensus 266 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 324 (721)
++.+... .+|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998763 137777888777766655543 334477777654 344 444 4566666654432
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004976 325 GGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALEL 404 (721)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 404 (721)
.++.+.+..+|++++.........+|......-...+. ..+..++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHH
Confidence 33467788888888753111112233222211111111 0111111110 1122333333
Q ss_pred HHHHHhcCCCC----C-----------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCh
Q 004976 405 FNLVLKEEKYV----Q-----------L--D------VVTYNNLIQGLCKED-------RLDEAVKIYHTMAERGISGNL 454 (721)
Q Consensus 405 ~~~~~~~~~~~----~-----------~--~------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~ 454 (721)
+.........+ + | + ...|...+..-...+ ..+....+|++++... +..+
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCH
Confidence 33322110100 0 0 0 123444443322221 1234567788887763 6688
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC-
Q 004976 455 VTFNILIGKYLTAGIIDKAL-EMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN---------DPT- 523 (721)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~- 523 (721)
..|...+..+...|+.++|. .+|++++...+ .+...|...+....+.|++++|..+|++++.... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 88998888888889988996 99999988643 3667778888888899999999999999876410 131
Q ss_pred -----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC
Q 004976 524 -----------LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKA-GDLQSARELYNNMLQMGLP 591 (721)
Q Consensus 524 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 591 (721)
..+|...+....+.|+.+.|+.+|.++++.........|...+....+. ++.+.|..+|+..++. .+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 2367777787788899999999999998851112334454444444444 4589999999999986 45
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 592 PDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHK--PNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
.+...|..++......|+.+.|+.+|++++....+ .....|..++..-...|+.+.+.++.+++.+ ..|+......
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHH
Confidence 56677778888888899999999999999886321 1346788888888899999999999999998 5676555555
Q ss_pred HHHH
Q 004976 670 ILVC 673 (721)
Q Consensus 670 ll~~ 673 (721)
+..-
T Consensus 580 f~~r 583 (679)
T 4e6h_A 580 FTNK 583 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=9.8e-16 Score=147.01 Aligned_cols=247 Identities=11% Similarity=-0.033 Sum_probs=183.9
Q ss_pred CCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 44 PNSQYAEAVSLFQRAICSDR---LPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKF 120 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (721)
..+++++|++.|++++...+ +.+..++..++.++...|++++|+..|++++..+ |.+..++..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45899999999999998642 2356788999999999999999999999999885 6778889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 121 ALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 121 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
|...++.+++.. +.+..++..++..|...|++++|...|+++.+. .|+.......+..+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998875 346788888999999999999999999999886 34444444444555677888999988877766
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 004976 201 VGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDA---DVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNV 277 (721)
Q Consensus 201 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 277 (721)
.. +++...+ .++..+...++.++|...++++....+.. +..++..++.+|...|++++|...|++++... |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 3333333 46667777788888888888876543211 14667778888888888888888888887653 322
Q ss_pred chHHHHHHHHHhcCCHHHHHHHH
Q 004976 278 VTYNSLMHCLCKIGQWKEAIAML 300 (721)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~A~~~~ 300 (721)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223345566667777776665
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=1.1e-12 Score=138.63 Aligned_cols=454 Identities=10% Similarity=0.018 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHH
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK---PKFALGVI 125 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~ 125 (721)
.+.+..|++.+..+|. +...|..++..+.+.++++.+..+|++++.. .|.....|...+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 4667788988888765 9999999999999999999999999999998 48888999999999999999 99999999
Q ss_pred HHHHHCCC-CcCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-ChhhHHHHHHHHH---------h
Q 004976 126 GLILKRGF-VVNIYAFNLILKGFCRKGEV--------NKAIELFGEIKS-NGV-SP-DNCSYNTIVNGLC---------K 184 (721)
Q Consensus 126 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 184 (721)
++++...+ ++++.+|...+....+.++. +...++|+.++. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99987642 36888888888776666554 334578887765 354 34 4467877776543 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHH
Q 004976 185 AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKL 264 (721)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 264 (721)
+++.+.+..+|++++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34577888999888863111112233222111101011 011111111 01123334444
Q ss_pred HHHHHhC--CCC---CC--------------------cchHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCh
Q 004976 265 FDDMLEK--GIS---PN--------------------VVTYNSLMHCLCKIG-------QWKEAIAMLDAMMERGIRPDV 312 (721)
Q Consensus 265 ~~~~~~~--~~~---~~--------------------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~ 312 (721)
+.++... ++. |. ...|...+..-...+ ..+.+..+|++++.. .+-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332211 110 00 011222221111111 011223344444433 12234
Q ss_pred hhHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---------CCCH
Q 004976 313 VTYTCLIEGLCKGGRATKAI-DLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEKGM---------MPDV 382 (721)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~ 382 (721)
..|...+..+...|+.++|. ++|++.+.. .|.+...|...+...-..|+++.|..+|+++++... .|+.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 44444444444444444443 444444443 233333444444444444444444444444443100 0100
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004976 383 VSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIG 462 (721)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (721)
+.. ..... .....+|...+....+.|+.+.|..+|.++.+.........|...+.
T Consensus 423 ----------------~~~---~~~~~------~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 423 ----------------ESA---INQLK------SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp ----------------HHH---HHHHH------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred ----------------hhh---hhhhc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000 00000 00123555666666666667777777777665410222334443333
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC
Q 004976 463 KYLTA-GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDP--TLFDYNALMASLCKESS 539 (721)
Q Consensus 463 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 539 (721)
.-... ++.+.|..+|+..++.-+ .+...+...+......|+.+.|..+|++++....++ ...+|...+..-.+.|+
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 33333 346777777777766532 255555666666666777777777777776653321 23456666666666777
Q ss_pred HHHHHHHHHHHHHcC
Q 004976 540 LEQAKRLFIEIRNAN 554 (721)
Q Consensus 540 ~~~A~~~~~~~~~~~ 554 (721)
.+.+.++.+++.+..
T Consensus 557 ~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKF 571 (679)
T ss_dssp SHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=3e-14 Score=136.30 Aligned_cols=223 Identities=11% Similarity=0.006 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHhHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ----TQKPKFALGVIGLILKRGFVVNIYAFN 141 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 141 (721)
+..++..++..+...|++++|+.+|+++.. +.+..++..++..+.. .+++++|...|+++.+.+ ++.++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 566777788888888888888888888876 3455677777777877 888888888888877764 567777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004976 142 LILKGFCR----KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK----AKRFKEALDILPDMEAVGCCPNLITYSTL 213 (721)
Q Consensus 142 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 213 (721)
.++..|.. .+++++|+..|++..+.+ +..++..+..+|.. .+++++|+.+|++....+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 66677777777777 777788888777777754 45566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 004976 214 MDGLCK----DGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCS----NGSFDKGKKLFDDMLEKGISPNVVTYNSLMH 285 (721)
Q Consensus 214 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 285 (721)
...+.. .+++++|+..|+++.+.+ +...+..++.+|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 677766 677777777777776653 45566667777777 777777777777776653 2455666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHC
Q 004976 286 CLCK----IGQWKEAIAMLDAMMER 306 (721)
Q Consensus 286 ~~~~----~g~~~~A~~~~~~~~~~ 306 (721)
+|.. .+++++|+..|++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666 66777777777766664
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=2.5e-15 Score=141.16 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=132.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004976 454 LVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMAS 533 (721)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (721)
...+..++..+...|++++|...++++++..+. +...+..++..+...|++++|...++++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555566666666666666666654432 45566666666666666666666666666553 2245566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 004976 534 LCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDA 613 (721)
Q Consensus 534 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 613 (721)
+...|++++|..+++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776644 2355567777777777777777777777777653 44566777777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 614 KSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
++.+++++... +.+..++..++.++...|++++|...++++++ ..|+.......+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHH
Confidence 88888877763 55677777888888888888888888888877 56665554444443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1.6e-14 Score=136.41 Aligned_cols=209 Identities=13% Similarity=0.062 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004976 455 VTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASL 534 (721)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (721)
..+..++..+...|++++|...++++++..+. +...+..++..+...|++++|...++++.+..+ .+...+..++.++
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 33444455555555555555555555554322 445555555555556666666666655555421 2445555666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 004976 535 CKESSLEQAKRLFIEIRNANCEP-DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDA 613 (721)
Q Consensus 535 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 613 (721)
...|++++|+++++++...+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665521223 33456666666777777777777777766643 33456667777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 614 KSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
...++++++.. +.+...+..++.++...|++++|.++++++.+ ..|+......
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHHH
Confidence 77777776653 45666677777777777777777777777776 4565554443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3e-14 Score=131.86 Aligned_cols=214 Identities=14% Similarity=0.048 Sum_probs=159.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004976 452 GNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALM 531 (721)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 531 (721)
.+...+..++..+...|++++|...++++++..+. +...+..++.++...|++++|...++++.... +.+...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34556677777777777888888877777776543 56677777777788888888888888777763 23566777778
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004976 532 ASLCKE-SSLEQAKRLFIEIRNANCEPD-VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL 609 (721)
Q Consensus 532 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 609 (721)
.++... |++++|...++++...+..|+ ...+..++.++...|++++|+..++++.+.. +.+...+..++.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 888888 888888888888877222233 4577778888888888888888888888753 4456778888888888888
Q ss_pred HhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 610 LSDAKSVYQKMVASGHK-PNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 610 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
+++|.+.+++++... + .+...+..++..+...|+.++|..+++.+.+ ..|+......++
T Consensus 163 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHh
Confidence 888888888888764 4 6777777777788888888888888888876 567666555444
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=8.2e-15 Score=137.56 Aligned_cols=218 Identities=13% Similarity=0.068 Sum_probs=158.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 417 LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMI 496 (721)
Q Consensus 417 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 496 (721)
.....+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+..+. +...+..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345567777778888888888888888888764 557778888888888889999999999888887543 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 004976 497 DGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQ 576 (721)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 576 (721)
..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.... +.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888999999999999888774 3356778888888999999999999999888754 345678888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 577 SARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
+|+..++++.+.. +.+..++..++.++...|++++|.+.++++++.. +.+...+..+.....
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHh
Confidence 9999999988863 4557788889999999999999999999998864 556666665544433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=5.9e-15 Score=141.52 Aligned_cols=245 Identities=13% Similarity=-0.004 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004976 396 GKVDEALELFNLVLKEEKYV-QLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKAL 474 (721)
Q Consensus 396 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (721)
|++++|+..++++++..+.. +.+..++..++.++...|++++|...|+++.+.. +.+...+..++..+...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 44555555555555421110 0123445555555555555555555555555543 334555555555555555666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 475 EMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNAN 554 (721)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 554 (721)
..++++++..+. +...+..++.++...|++++|...++++.+.. |+..........+...|++++|...++++....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555554332 44555555555555566666666555555542 222222222223344455666666665555432
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 004976 555 CEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD-----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNA 629 (721)
Q Consensus 555 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 629 (721)
+++...+ .++..+...++.++|+..++++.... |+ ..++..++.++...|++++|...|++++... +.+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh-
Confidence 1222222 24444555555555666665555431 21 3455556666666666666666666665542 222
Q ss_pred HHHHHHHHHHHcCCChhHHHHHH
Q 004976 630 CVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
+...+.++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122244455555555555544
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=4.4e-14 Score=133.37 Aligned_cols=201 Identities=13% Similarity=-0.024 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG 146 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (721)
...|..++..+...|++++|+.+|++++... +.+...+..++.++...|++++|.+.++.+++.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888899999999999999999998875 5677788888888888888888888888888765 3467778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 147 FCRKGEVNKAIELFGEIKSNGVSP-DNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
+...|++++|+..++++.+.+..| +...+..+..++...|++++|...++++.... +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887722233 45567777777888888888888888877653 3345667777777777778888
Q ss_pred HHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 226 AMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
|...++++.+..+ .+...+..++.++...|++++|...++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8777777776543 25566677777777777777777777777765
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=8.3e-14 Score=128.87 Aligned_cols=203 Identities=10% Similarity=-0.038 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+..++..++..+...|++++|+.+|++++... |.+...+..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 55677777778888888888888888877764 5556677777777777777777777777777654 335666777777
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 004976 146 GFCRK-GEVNKAIELFGEIKSNGVSP-DNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRV 223 (721)
Q Consensus 146 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 223 (721)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.... +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777776621122 24556666666777777777777777666543 22355566666666666666
Q ss_pred hHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 224 DEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEK 271 (721)
Q Consensus 224 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 271 (721)
++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666666666665533124555555556666666666666666666543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=6.6e-14 Score=124.78 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMIN 567 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 567 (721)
+...|..++..+...|++++|+..|+++++..+ .+...+..++.+|.+.|++++|+..+.++.... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566777777788888888888888888777642 256677778888888888888888888777754 234556777777
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhH
Q 004976 568 GTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 647 (721)
.+...++++.|...+.++.... +.+...+..++.++...|++++|++.|+++++.. |.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887753 4556777888888888888888888888888764 6677888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 004976 648 VFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 648 A~~~~~~~~~~~~~p~~~ 665 (721)
|++.|+++++ +.|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 8888888887 666543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=9.9e-15 Score=148.97 Aligned_cols=274 Identities=15% Similarity=0.055 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-Cc
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF----LSLSGLIEVFVQTQKPKFALGVIGLILKR----GF-VV 135 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~ 135 (721)
.....+...+..+...|++++|+.+|++++... +.+. .++..++.++...|++++|...++.++.. +. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456667778888888888888888888888764 3342 45677788888888888888888876532 11 12
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHH
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKSNGV-SPD----NCSYNTIVNGLCKAKR--------------------FKE 190 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~ 190 (721)
...++..++..+...|++++|...++++.+... .++ ..++..+..+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677777888888888888888877765310 011 2366677777777777 777
Q ss_pred HHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC-CC----ccchHHHHHHHHhcCChhH
Q 004976 191 ALDILPDMEAV----GCCP-NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD-AD----VVVYSALISGFCSNGSFDK 260 (721)
Q Consensus 191 a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 260 (721)
|...+.+.... +..| ...++..++..+...|++++|...++++.+.... ++ ..++..++.+|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777665432 1011 1234566666677777777777777666543111 01 1255666666666666666
Q ss_pred HHHHHHHHHhCCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCChHH
Q 004976 261 GKKLFDDMLEKGIS-PN----VVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIR-PD----VVTYTCLIEGLCKGGRATK 330 (721)
Q Consensus 261 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 330 (721)
|...++++...... ++ ..++..++..+...|++++|...+++..+.... .+ ..++..++..+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 66666666532100 01 234555566666666666666666555432100 01 2334445555555555555
Q ss_pred HHHHHHHHH
Q 004976 331 AIDLLNWMV 339 (721)
Q Consensus 331 a~~~~~~~~ 339 (721)
|...+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=2.2e-13 Score=132.42 Aligned_cols=219 Identities=10% Similarity=0.021 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVR-------SKNY-------EYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ 114 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (721)
++|+..|++++...|. +..+|..++..+.. .|++ ++|+.+|++++..-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 7899999999998755 89999999988764 5886 8999999999984226677788999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 004976 115 TQKPKFALGVIGLILKRGFVVNIY-AFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLC-KAKRFKEAL 192 (721)
Q Consensus 115 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 192 (721)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|+.+|+++++.+ +.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999886433 444 78888888888999999999999998864 344445544333322 368888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCC-CCC--CccchHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 193 DILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKG-LDA--DVVVYSALISGFCSNGSFDKGKKLFDDML 269 (721)
Q Consensus 193 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 269 (721)
.+|++..... +.+...|..++..+.+.|++++|+.+|++++... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887653 3356678888888888888888888888888752 233 45577777888888888888888888887
Q ss_pred hC
Q 004976 270 EK 271 (721)
Q Consensus 270 ~~ 271 (721)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.4e-14 Score=146.39 Aligned_cols=203 Identities=16% Similarity=0.108 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 004976 455 VTFNILIGKYLTAGIIDKALEMWKHLLELG-----HVPNSVTYSSMIDGFCKIGM-----------------LNIAKGIF 512 (721)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 512 (721)
..+..++..|...|++++|...++++++.. .......+..++..+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555566666655555554431 01123355566666666666 67777666
Q ss_pred HHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHH
Q 004976 513 SKMRVS----GNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRNANCE-PD----VVSFNTMINGTLKAGDLQSARELY 582 (721)
Q Consensus 513 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 582 (721)
++..+. +..+ ....+..++..+...|++++|+..++++...... ++ ...+..++.+|...|++++|+..+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 1111 1346777888888889999998888887763100 11 126778888999999999999999
Q ss_pred HHHHhCC--CC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 004976 583 NNMLQMG--LP---PDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS----G-HKPNACVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 583 ~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
+++.... .. ....++..++.++...|++++|.+.+++++.. + ......++..++.+|...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9887741 00 11467788899999999999999999998864 1 0112457888999999999999999999
Q ss_pred HHHHH
Q 004976 653 HEMAD 657 (721)
Q Consensus 653 ~~~~~ 657 (721)
+++++
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.1e-14 Score=146.71 Aligned_cols=237 Identities=11% Similarity=0.016 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCcCH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF----LSLSGLIEVFVQTQKPKFALGVIGLILKR----G-FVVNI 137 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~ 137 (721)
...+..++..+...|++++|+.+|++++..+ +.+. .++..++.++...|++++|...++++++. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455677888888999999999999988874 3443 46778888888889999998888887643 1 12234
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 004976 138 YAFNLILKGFCRKGEVNKAIELFGEIKSN----G-VSPDNCSYNTIVNGLCKAKR-----------------FKEALDIL 195 (721)
Q Consensus 138 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 195 (721)
.++..++..|...|++++|...++++.+. + .+....++..+..+|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57778888888888888888888877653 1 01123466677777777787 77777777
Q ss_pred HHHHhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCC-C----ccchHHHHHHHHhcCChhHHHHHH
Q 004976 196 PDMEAV----GCCP-NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDA-D----VVVYSALISGFCSNGSFDKGKKLF 265 (721)
Q Consensus 196 ~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~ 265 (721)
++.... +..+ ...++..++..+...|++++|+..++++.+..... + ..++..++.+|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 1011 12245556666666666666666666665431110 1 124555556666666666666666
Q ss_pred HHHHhCCCC-C----CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 266 DDMLEKGIS-P----NVVTYNSLMHCLCKIGQWKEAIAMLDAMM 304 (721)
Q Consensus 266 ~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 304 (721)
++++..... . ...++..++.++...|++++|...+++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555432100 0 02334445555555555555555555444
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.8e-13 Score=121.90 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+..+|..++.++.+.|++++|+..|+++++.+ |.+..++..++.++.+.|++++|...+..+.... +.+..++..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67889999999999999999999999999886 6778888889999999999999999998888764 446777888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
.+...++++.|...++++.+.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+..+|..++.++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888764 5567778888888888888888888888887764 4456678888888888888888
Q ss_pred HHHHHHHHhHC
Q 004976 226 AMGLLEEMKAK 236 (721)
Q Consensus 226 A~~~~~~~~~~ 236 (721)
|+..|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888888775
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2e-14 Score=146.70 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=126.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCC--------------------HHHHHH
Q 004976 421 TYNNLIQGLCKEDRLDEAVKIYHTMAERGI-----SGNLVTFNILIGKYLTAGI--------------------IDKALE 475 (721)
Q Consensus 421 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 475 (721)
++..++..+...|++++|...++++.+... .....++..++..|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444445555555555555544433200 0012244555555556666 666666
Q ss_pred HHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHHHH
Q 004976 476 MWKHLLEL----GH-VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN-DPT----LFDYNALMASLCKESSLEQAKR 545 (721)
Q Consensus 476 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~ 545 (721)
.+++++.. +. ......+..++..+...|++++|...++++.+... .++ ...+..++..+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655432 10 01123556666667777777777777776654311 111 2256667777777777777777
Q ss_pred HHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCHhHHHH
Q 004976 546 LFIEIRNANCE-PD----VVSFNTMINGTLKAGDLQSARELYNNMLQMGL-PPD----ALTYSTLIHRFLRFGLLSDAKS 615 (721)
Q Consensus 546 ~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 615 (721)
.++++...... ++ ..++..++..+...|++++|...++++.+... .++ ..++..++.++...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776642100 11 33566677777777777777777777765310 011 3456677777777788888877
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChh
Q 004976 616 VYQKMVAS----GH-KPNACVYDSLLKGFSSQGETE 646 (721)
Q Consensus 616 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 646 (721)
.++++++. +. +....++..++.++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 77776653 11 112345666666776666553
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.8e-13 Score=138.02 Aligned_cols=231 Identities=10% Similarity=-0.021 Sum_probs=166.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC--CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 004976 425 LIQGLCKEDRLDEAVKIYHTMAERG--ISG---NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHV-P-----NSVTYS 493 (721)
Q Consensus 425 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 493 (721)
.+..+...|++++|+..++++.+.- .+. ...++..++..|...|+++.|+..++++++.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566777888888888888876531 111 2356777888888888888888888888764211 1 134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 004976 494 SMIDGFCKIGMLNIAKGIFSKMRVSGND-PT----LFDYNALMASLCKESSLEQAKRLFIEIRNA----NC-EPDVVSFN 563 (721)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~ 563 (721)
.++.++...|++++|...++++.+.... ++ ..++..++.+|...|++++|+..+++++.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888899999999988887754111 11 236788888999999999999999988772 22 22345788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC---CCC-hhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQMGL---PPD-ALTYSTLIHRFLRFGL---LSDAKSVYQKMVASGHKPNACVYDSLL 636 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 636 (721)
.++.++...|++++|...++++.+... .|. ...+..++..+...|+ +++|+.++++.. ..+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 889999999999999999998876410 121 2335678888888888 777777777762 1133455778899
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 004976 637 KGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 637 ~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..|...|++++|..+++++++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=4.6e-14 Score=145.81 Aligned_cols=216 Identities=9% Similarity=-0.019 Sum_probs=148.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 004976 82 NYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKP-KFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELF 160 (721)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 160 (721)
.+++++..+++..... +.+...+..++.++...|++ ++|...|+++++.+ +.+..++..++..|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4666666776665543 45666777777777777777 77777777777664 335667777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--------CCh
Q 004976 161 GEIKSNGVSPDNCSYNTIVNGLCKA---------KRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKD--------GRV 223 (721)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~ 223 (721)
+++++. .|+...+..+..+|... |++++|+..|++..... +.+...|..++.++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777766 35566677777777777 77777777777776653 33456677777777776 777
Q ss_pred hHHHHHHHHHhHCCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004976 224 DEAMGLLEEMKAKGLD--ADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLD 301 (721)
Q Consensus 224 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 301 (721)
++|+..|+++.+..+. .+..+|..++.+|...|++++|...|+++++.. +.+...+..+..++...|++++|+..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777765431 266677777777777777777777777777653 2245567777777777777777776654
Q ss_pred HH
Q 004976 302 AM 303 (721)
Q Consensus 302 ~~ 303 (721)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.1e-12 Score=127.65 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 84 EYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQ-------TQKP-------KFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
++|+.+|++++... |.+...|..++..+.. .|++ ++|..+|+++++.-.+.+..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888899988874 7788888888877763 4775 7888888888873124466778888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCChhHH
Q 004976 150 KGEVNKAIELFGEIKSNGVSPD-NC-SYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLC-KDGRVDEA 226 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A 226 (721)
.|++++|..+|+++++. +|+ .. +|..++..+.+.|++++|..+|++..... +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888875 343 33 67777777788888888888888887753 233344443333322 25778888
Q ss_pred HHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004976 227 MGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKG-ISP--NVVTYNSLMHCLCKIGQWKEAIAMLDAM 303 (721)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 303 (721)
..+|+++++..+. +...|..++..+.+.|++++|+.+|++++... ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877765433 66777777777777788888888888777752 233 2446667777777777777777777777
Q ss_pred HHC
Q 004976 304 MER 306 (721)
Q Consensus 304 ~~~ 306 (721)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=6.4e-14 Score=144.74 Aligned_cols=214 Identities=9% Similarity=-0.045 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004976 435 LDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGII-DKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFS 513 (721)
Q Consensus 435 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 513 (721)
+++++..++...... +.+...+..++..+...|++ ++|+..|+++++..+. +...+..++.+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666655543 45677778888888888888 8888888888877644 67788888888888888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCHH
Q 004976 514 KMRVSGNDPTLFDYNALMASLCKE---------SSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKA--------GDLQ 576 (721)
Q Consensus 514 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 576 (721)
++++. .|+...+..++.++... |++++|+..|+++++.. +.+...|..++.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88876 45567778888888888 88889999998888865 23567888888888887 8899
Q ss_pred HHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 004976 577 SARELYNNMLQMGLP---PDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 653 (721)
+|+..|+++++.. + .+...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++|+..+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998853 3 367788899999999999999999999998874 6677888889999999998888887654
Q ss_pred HH
Q 004976 654 EM 655 (721)
Q Consensus 654 ~~ 655 (721)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.1e-13 Score=137.06 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004976 456 TFNILIGKYLTAGIIDKALEMWKHLLELGHV-PN----SVTYSSMIDGFCKIGM--------------------LNIAKG 510 (721)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 510 (721)
.+..++..+...|++++|...++++++.... ++ ...+..++..+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 4445555555666666666665555443110 11 2245555666666666 666666
Q ss_pred HHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHH
Q 004976 511 IFSKMRVS----GNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRNANC-EPD----VVSFNTMINGTLKAGDLQSARE 580 (721)
Q Consensus 511 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 580 (721)
.+++.... +..+ ....+..++..+...|++++|...++++..... .++ ..++..++..+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655432 1111 133567777788888888888888887765210 011 2367778888888899999999
Q ss_pred HHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChhHHHH
Q 004976 581 LYNNMLQMGL-PPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS----GH-KPNACVYDSLLKGFSSQGETEEVFD 650 (721)
Q Consensus 581 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 650 (721)
+++++.+... .++ ..++..++.++...|++++|...+++++.. +. .....++..++.++...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 8888776410 011 456778888899999999999999888764 10 1124477788899999999999999
Q ss_pred HHHHHHH
Q 004976 651 LIHEMAD 657 (721)
Q Consensus 651 ~~~~~~~ 657 (721)
+++++++
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=5.8e-14 Score=139.05 Aligned_cols=277 Identities=15% Similarity=0.021 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCcCHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS----FLSLSGLIEVFVQTQKPKFALGVIGLILKR----G-FVVNIY 138 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~ 138 (721)
..+...+..+...|++++|+.+|++++... +.+ ...+..++..+...|++++|...++.+++. + .+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556777777777777777777777764 333 245666777777777777777777766532 1 112244
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 004976 139 AFNLILKGFCRKGEVNKAIELFGEIKSNGV-SPD----NCSYNTIVNGLCKAKR--------------------FKEALD 193 (721)
Q Consensus 139 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 193 (721)
++..++..+...|++++|...++++.+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 666677777777777777777776654210 011 2255566666666666 666666
Q ss_pred HHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC-----CCccchHHHHHHHHhcCChhHHHH
Q 004976 194 ILPDMEAV----GCCP-NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD-----ADVVVYSALISGFCSNGSFDKGKK 263 (721)
Q Consensus 194 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 263 (721)
.+++.... +..+ ...++..++..+...|++++|...++++.+.... ....++..++.++...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554321 0000 1123444555555555555555555554432100 001134444444444444444444
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004976 264 LFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRP-DVVTYTCLIEGLCKGGRATKAIDLLNWMVKKG 342 (721)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 342 (721)
.+++...... ..+..+ ...++..++..+...|++++|...++++....
T Consensus 245 ~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4444432200 000000 02234444455555555555555555444320
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 343 -----EKLSVITYNVLIKGLCQKGLVGEAYEILNMMIEK 376 (721)
Q Consensus 343 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (721)
......++..++..+...|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111234555566666666666666666666553
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=9.8e-13 Score=132.68 Aligned_cols=233 Identities=9% Similarity=-0.023 Sum_probs=163.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCChhhHH
Q 004976 388 LLMGIGKFGKVDEALELFNLVLKEEKYVQL---DVVTYNNLIQGLCKEDRLDEAVKIYHTMAERG--I----SGNLVTFN 458 (721)
Q Consensus 388 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~ 458 (721)
.+..+...|++++|+..+++++........ ...++..++.+|...|+++.|+..+.++.+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566677777777777777653211111 23566777777777888888887777765431 0 11134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 004976 459 ILIGKYLTAGIIDKALEMWKHLLELGHV-PN----SVTYSSMIDGFCKIGMLNIAKGIFSKMRVS----GN-DPTLFDYN 528 (721)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 528 (721)
.++..|...|++++|...++++++.... ++ ..++..++.+|...|++++|...++++.+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888888764211 11 246778888899999999999999888762 22 22355788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCC-hhhHHHH
Q 004976 529 ALMASLCKESSLEQAKRLFIEIRNA----NCEPDVVSFNTMINGTLKAGD---LQSARELYNNMLQMGLPPD-ALTYSTL 600 (721)
Q Consensus 529 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 600 (721)
.++.++.+.|++++|...++++... +.+.....+..++..+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8899999999999999999988763 111112345678888889998 77777777766 22333 3577789
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC
Q 004976 601 IHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
+..|...|++++|.+.++++++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.5e-12 Score=120.52 Aligned_cols=210 Identities=15% Similarity=0.060 Sum_probs=166.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNAL 530 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (721)
+.++..+...+..+...|++++|+..|+++++..+.++...+..++.++...|++++|+..++++.+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34678888999999999999999999999999876467788888999999999999999999999987422 56788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 004976 531 MASLCKESSLEQAKRLFIEIRNANCEPDV-------VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD---ALTYSTL 600 (721)
Q Consensus 531 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 600 (721)
+.++...|++++|+..++++++... .+. ..+..++..+...|++++|++.|+++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999998652 234 45778888899999999999999999985 454 5678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 601 IHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
+.++...| ...++++...+ +.+...+... .....|.+++|+..++++++ +.|+......++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 88886544 45566666653 4445444433 34456779999999999999 788887777666654
No 72
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=151.06 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=97.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKS---NGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYST 212 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 212 (721)
...+|+.++.+|++.|++++|..+|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|...|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHhHCCCCCCccchHHHHHHHH
Q 004976 213 LMDGLCKDGRV-DEAMGLLEEMKAKGLDADVVVYSALISGFC 253 (721)
Q Consensus 213 l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (721)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 88888888874 678888888888888888888887775443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=134.65 Aligned_cols=238 Identities=15% Similarity=0.158 Sum_probs=146.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 004976 419 VVTYNNLIQGLCKEDRLDEAVKIYHTMAER-------GISGNLVTFNILIGKYLTAGIIDKALEMWKHLLEL------GH 485 (721)
Q Consensus 419 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~ 485 (721)
..++..++..+...|++++|..+++++.+. ..+.....+..++..|...|++++|...+++++.. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566666666667777777766666552 11333455666677777777777777777776654 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 004976 486 -VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS------GNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRNA---- 553 (721)
Q Consensus 486 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 553 (721)
......+..++..+...|++++|...++++.+. +..| ....+..++..+...|++++|+.+++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 123455667777777788888888777777654 1112 2445677788888888888888888887763
Q ss_pred --CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCCh-hhH------HHHHHHHHhcCCHhHHHHH
Q 004976 554 --NCEPD-VVSFNTMINGTLKAGDLQSARELYNNMLQM-------GLPPDA-LTY------STLIHRFLRFGLLSDAKSV 616 (721)
Q Consensus 554 --~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~~------~~l~~~~~~~g~~~~A~~~ 616 (721)
+..|. ..++..++.++...|++++|..+++++.+. ...+.. ..+ ..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11222 346777888888888888888888888763 111221 122 2233334455666777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 617 YQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
++++.... +....++..++.+|...|++++|.++++++++
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776542 45667888999999999999999999999886
No 74
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=150.28 Aligned_cols=153 Identities=13% Similarity=0.196 Sum_probs=123.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH---HCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 004976 99 FPSFLSLSGLIEVFVQTQKPKFALGVIGLIL---KRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSY 175 (721)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 175 (721)
.....+|+.++..|++.|+.++|.++|..|. ..|..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3344679999999999999999999998875 3478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCC------ccchHHH
Q 004976 176 NTIVNGLCKAKRF-KEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDAD------VVVYSAL 248 (721)
Q Consensus 176 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l 248 (721)
+++|.++++.|+. ++|.++|++|...|+.||..+|+.++....+. ..++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999984 78999999999999999999999888654332 334444444 2233332 3344455
Q ss_pred HHHHHhcC
Q 004976 249 ISGFCSNG 256 (721)
Q Consensus 249 ~~~~~~~g 256 (721)
...|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666555
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=3.7e-12 Score=128.08 Aligned_cols=232 Identities=12% Similarity=-0.028 Sum_probs=164.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHH
Q 004976 423 NNLIQGLCKEDRLDEAVKIYHTMAERGI-SG----NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHV-P-----NSVT 491 (721)
Q Consensus 423 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~ 491 (721)
...+..+...|++++|+..++++.+... .+ ....+..++..|...|+++.|...++++++.... + ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566778888888888888765310 11 2346677788888888888888888887764211 1 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 004976 492 YSSMIDGFCKIGMLNIAKGIFSKMRVS----GNDP-TLFDYNALMASLCKESSLEQAKRLFIEIRN-----ANCEPDVVS 561 (721)
Q Consensus 492 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 561 (721)
+..++.++...|++++|...++++.+. +..+ ...++..++.+|...|++++|+..|++++. .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 677888888889999998888887653 1111 134677888889999999999999998876 33 223567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCC-hhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHH
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGL---PPD-ALTYSTLIHRFLRFGL---LSDAKSVYQKMVASGHKPNACVYDS 634 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 634 (721)
+..++.++...|++++|..+++++.+... .+. ...+..+...+...|+ +.+|+..+++.. ..+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHH
Confidence 88888999999999999999999887521 121 2345566666777777 777777777631 11233456778
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH
Q 004976 635 LLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 635 l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
++..|...|++++|...++++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=132.87 Aligned_cols=170 Identities=15% Similarity=0.042 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-------HIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKR------G 132 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 132 (721)
...++..++..+...|++++|+.+|++++.. +.+....++..++.++...|++++|...++.+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777778888888888888888877763 22344456677777777788888887777777643 1
Q ss_pred -CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 004976 133 -FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN------GV-SPDNCSYNTIVNGLCKAKRFKEALDILPDMEAV--- 201 (721)
Q Consensus 133 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 201 (721)
.+....++..++..+...|++++|...++++.+. +. +....++..+..++...|++++|+.+++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2233456777777777888888888887777653 11 123345666777777778888887777777653
Q ss_pred ---CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhH
Q 004976 202 ---GCCP-NLITYSTLMDGLCKDGRVDEAMGLLEEMKA 235 (721)
Q Consensus 202 ---~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (721)
+..| ...++..++..+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 233566677777777777777777777765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1e-11 Score=124.81 Aligned_cols=232 Identities=14% Similarity=0.051 Sum_probs=161.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C----CChhhH
Q 004976 387 TLLMGIGKFGKVDEALELFNLVLKEEKYVQ---LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGI--S----GNLVTF 457 (721)
Q Consensus 387 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~ 457 (721)
..+..+...|++++|+..++++........ ....++..++.+|...|+++.|...++++.+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455667777777777777765322111 1234667777778888888888888777654210 1 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 004976 458 NILIGKYLTAGIIDKALEMWKHLLELGH--V---PNSVTYSSMIDGFCKIGMLNIAKGIFSKMRV-----SGNDPTLFDY 527 (721)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 527 (721)
..++..|...|++++|...++++++... . ....++..++.++...|++++|...++++.. .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7788888888888888888888776411 1 1234667788888899999999999988876 32 2236677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCC-hhhHHH
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANC---EP-DVVSFNTMINGTLKAGD---LQSARELYNNMLQMGLPPD-ALTYST 599 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~ 599 (721)
..++.++.+.|++++|...++++..... .+ ....+..+...+...++ +.+|+.++++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8888999999999999999998887321 12 23356666777778888 77777777762 22233 356678
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHH
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
++..|...|++++|.+.|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999999875
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=1.2e-11 Score=114.48 Aligned_cols=209 Identities=7% Similarity=-0.055 Sum_probs=167.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 417 LDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMI 496 (721)
Q Consensus 417 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 496 (721)
.++..+...+..+...|++++|+..|+++.+...+++...+..++.++...|++++|+..++++++..+. +...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668889999999999999999999999998763378888888999999999999999999999998655 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004976 497 DGFCKIGMLNIAKGIFSKMRVSGNDPTL-------FDYNALMASLCKESSLEQAKRLFIEIRNANCEPD---VVSFNTMI 566 (721)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 566 (721)
.++...|++++|...++++.+..+. +. ..|..++..+...|++++|+..|+++++.+ |+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 9999999999999999999987432 34 458888899999999999999999999854 65 45778888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
.+|... +...++++...+ ..+...+.... ....+.+++|+..++++++.. |.+..+...+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 887654 445566666653 33444444333 345677999999999999874 5566666655544
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=5e-12 Score=135.54 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 489 SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMING 568 (721)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (721)
...+..++.++.+.|++++|+..|+++++..+ .+...+..++.+|.+.|++++|+..|+++++.+ +.+...|..++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555555555555666666666655555421 134455556666666666666666666665543 1234455666666
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHH
Q 004976 569 TLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEV 648 (721)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 648 (721)
+...|++++|++.|+++++.. +.+...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666666532 2334556666666666666666666666666553 44555666666666666666666
Q ss_pred HHHHHHHHH
Q 004976 649 FDLIHEMAD 657 (721)
Q Consensus 649 ~~~~~~~~~ 657 (721)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=3.9e-12 Score=136.35 Aligned_cols=166 Identities=14% Similarity=0.002 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+.++|+.++.++.+.|++++|+..|+++++.+ |.+..++..++.++.+.|++++|+..|+++++.++ .+..++..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 57788889999999999999999999999876 67788888999999999999999999999888763 47788888889
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
+|...|++++|++.|+++++.+ +.+..+|+.+..+|.+.|++++|+..|++..+.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999888874 4567788888888888999999999998888764 3356678888888888888888
Q ss_pred HHHHHHHHhH
Q 004976 226 AMGLLEEMKA 235 (721)
Q Consensus 226 A~~~~~~~~~ 235 (721)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=6.9e-11 Score=118.69 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=110.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCC---ChhhHHHHH
Q 004976 354 IKGLCQKGLVGEAYEILNMMIEKGMMPDVV----SYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQL---DVVTYNNLI 426 (721)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~ 426 (721)
+..+...|++++|...+++........+.. .+..+...+...|++++|.+.+++++...+.... ...++..++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444555555555555555432111111 2333444445555555555555554432111000 011233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 004976 427 QGLCKEDRLDEAVKIYHTMAER----GIS--G-NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVP----NSVTYSSM 495 (721)
Q Consensus 427 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l 495 (721)
..+...|++++|...+++.... +.+ | ....+..++..+...|++++|...+++.+...... ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 4555555555555555554331 111 1 12233344455555555555555555554432211 11233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 004976 496 IDGFCKIGMLNIAKGIFSKMRVSGNDPTL-FDYN-----ALMASLCKESSLEQAKRLFIEIRNANCEP---DVVSFNTMI 566 (721)
Q Consensus 496 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 566 (721)
...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 44455555555555555544432111110 0111 11122344555555555554444321110 011233444
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 567 NGTLKAGDLQSARELYNNMLQM----GLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
..+...|++++|...++++... +.+++. ..+..++.++...|+.++|...+++++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555555555555544332 101111 1333444445555555555555555443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=6.9e-11 Score=118.70 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HHhHH
Q 004976 71 NSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFL----SLSGLIEVFVQTQKPKFALGVIGLILKRGFV-VN----IYAFN 141 (721)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 141 (721)
...+..+...|++++|+..+++++......+.. ++..++..+...|+++.|...+++++..... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344445555566666666666555543111111 2334445555555555555555555432111 01 12234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-CHhhH
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSN----GVS--P-DNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCC---P-NLITY 210 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---p-~~~~~ 210 (721)
.++..+...|++++|...+++..+. +.+ | ....+..+..++...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555556666666666666555432 111 1 1223444555556666666666666655443211 0 12234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhHCCCCCCc-cchH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCC---cchHH
Q 004976 211 STLMDGLCKDGRVDEAMGLLEEMKAKGLDADV-VVYS-----ALISGFCSNGSFDKGKKLFDDMLEKGISPN---VVTYN 281 (721)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 281 (721)
..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 45555566666666666666655432111111 1111 122334556666666666665544321111 11234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004976 282 SLMHCLCKIGQWKEAIAMLDAMMER----GIRPDV-VTYTCLIEGLCKGGRATKAIDLLNWMV 339 (721)
Q Consensus 282 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 339 (721)
.++..+...|++++|...+++.... +..++. .++..+..++...|+.++|...+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555555666666666666555432 101111 133344444555555555555555544
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1e-11 Score=110.65 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 490 VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGT 569 (721)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 569 (721)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666543 2245666677777777777777777777777653 23456677777777
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 004976 570 LKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
...|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.+++++... +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77788888888887777753 4556677777788888888888888888877763 556777888888888888888888
Q ss_pred HHHHHHHH
Q 004976 650 DLIHEMAD 657 (721)
Q Consensus 650 ~~~~~~~~ 657 (721)
..++++++
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.40 E-value=1.6e-10 Score=109.38 Aligned_cols=261 Identities=9% Similarity=0.006 Sum_probs=190.7
Q ss_pred cccCCCCCCCCcccccCCCccCCCCCC-cchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 004976 4 KAAFNPCRSFPERILRLPVKCFSSVPQ-SDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSK- 81 (721)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 81 (721)
+..|+.-.|.|-..-+.++......+. .++..+++++.... ...++|++.++.++..+|. ...+|+.-..++...|
T Consensus 5 ~~~~~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~-e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~ 82 (306)
T 3dra_A 5 KYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAE-EYSERALHITELGINELAS-HYTIWIYRFNILKNLPN 82 (306)
T ss_dssp SSCCTTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTT-CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTT
T ss_pred CCCCCCCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHccc
Confidence 456666666664333333322222221 24677888888754 3447999999999999877 8899999999999999
Q ss_pred -ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc---CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCh
Q 004976 82 -NYEYAFSVYSKMTCVHIFPSFLSLSGLIEVF----VQT---QKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEV 153 (721)
Q Consensus 82 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 153 (721)
++++++.+++.++..+ |.+..+|+....++ ... +++++++.+++.+++.+ +.+..+|+.-...+.+.|.+
T Consensus 83 ~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 83 RNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT
T ss_pred ccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccc
Confidence 9999999999999986 67777887776666 555 78899999999999876 44888888888888888888
Q ss_pred h--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 154 N--KAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKR------FKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 154 ~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
+ +++..++++++.+ +.|..+|+.-..++...+. ++++++.+.+++... +-|...|+.+...+.+.|+...
T Consensus 161 ~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 161 NDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp TCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGG
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChH
Confidence 8 9999999998875 5577788887777777766 778888888777764 4567778777777777776443
Q ss_pred -HHHHHHHHhHCC--CCCCccchHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 226 -AMGLLEEMKAKG--LDADVVVYSALISGFCSNGSFDKGKKLFDDMLE 270 (721)
Q Consensus 226 -A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 270 (721)
+..+.+++.+.+ -+.+..++..++.+|.+.|+.++|.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 444555554432 122556666777777777777777777777765
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=2.1e-11 Score=108.53 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567777888888888888888888887764 5566777777888888888888888888877664 346677777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
.+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777888888888887777653 4456667777777777777777777777776653 3345566667777777777777
Q ss_pred HHHHHHHHhHC
Q 004976 226 AMGLLEEMKAK 236 (721)
Q Consensus 226 A~~~~~~~~~~ 236 (721)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777776654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=8.8e-12 Score=119.75 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCHhhHHHHHH
Q 004976 45 NSQYAEAVSLFQRAIC-------SDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV------H-IFPSFLSLSGLIE 110 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~ 110 (721)
.|++++|+..|++++. .+.+....++..++.++...|++++|+..|++++.. + .+....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455556665555554 333346778899999999999999999999999865 1 1233456778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCC-------CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCChhhHH
Q 004976 111 VFVQTQKPKFALGVIGLILKRG-------FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN------G-VSPDNCSYN 176 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~ 176 (721)
++...|++++|...+.++++.. .+....++..++..|...|++++|+..++++.+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8888888888888888877541 1233456777777777788888888777777653 1 112234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004976 177 TIVNGLCKAKRFKEALDILPDMEA 200 (721)
Q Consensus 177 ~l~~~~~~~g~~~~a~~~~~~~~~ 200 (721)
.+..+|...|++++|..+++++..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777777766654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=4.3e-11 Score=115.11 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCcc----
Q 004976 174 SYNTIVNGLCKA-KRFKEALDILPDMEAVGCC-PN----LITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVV---- 243 (721)
Q Consensus 174 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 243 (721)
+++.+..+|... |++++|+..|++....... .+ ..++..++..+.+.|++++|+..|+++.+..+.....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555556554 6666666666655443100 00 2345566666666666666666666666543332111
Q ss_pred --chHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc------hHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004976 244 --VYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVV------TYNSLMHCLC--KIGQWKEAIAMLDAMME 305 (721)
Q Consensus 244 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 305 (721)
.+..++.++...|++++|...|++.++. .|+.. .+..++..+. ..+++++|+..|+.+..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3455666666666666666666666553 22211 2233444443 34556666666655543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=2.4e-11 Score=116.63 Aligned_cols=228 Identities=16% Similarity=0.120 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHH
Q 004976 429 LCKEDRLDEAVKIYHTMAER-------GISGNLVTFNILIGKYLTAGIIDKALEMWKHLLEL------GH-VPNSVTYSS 494 (721)
Q Consensus 429 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~ 494 (721)
....|++++|+..++++.+. ..+....++..++..+...|++++|+..++++++. +. ......+..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888776652 22334667888999999999999999999999865 21 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 004976 495 MIDGFCKIGMLNIAKGIFSKMRVS-----GN-DP-TLFDYNALMASLCKESSLEQAKRLFIEIRNA------NCEP-DVV 560 (721)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~ 560 (721)
++.++...|++++|...++++... +. .| ....+..++..+...|++++|..+++++... ...| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998765 11 12 3567888999999999999999999998874 1123 235
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHH---C---CCC
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM-------GLPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVA---S---GHK 626 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~ 626 (721)
++..++.++...|++++|+.+++++.+. ...+. ...+..+...+...+....+..+ ..+.. . ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCH
Confidence 7888999999999999999999999874 11222 34455555555444443333332 22211 1 112
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
....++..++.+|...|++++|..+++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999886
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=5.7e-11 Score=114.25 Aligned_cols=198 Identities=12% Similarity=0.013 Sum_probs=130.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHH
Q 004976 463 KYLTAGIIDKALEMWKHLLEL----GHVP-NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGND-PT----LFDYNALMA 532 (721)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 532 (721)
.|...|++++|...|.++++. +..+ ....+..++.+|...|++++|+..++++++.... .+ ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666543 1111 1345666677777777777777777766543111 01 346777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh------hhHHHH
Q 004976 533 SLCKE-SSLEQAKRLFIEIRNANCE-PD----VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA------LTYSTL 600 (721)
Q Consensus 533 ~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 600 (721)
+|... |++++|+..|++++..... .+ ..++..++..+...|++++|+..|+++.+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988763211 01 346788889999999999999999999985321111 156778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--cCCChhHHHHHHHHHHHcCCCCCH
Q 004976 601 IHRFLRFGLLSDAKSVYQKMVASGHKPN------ACVYDSLLKGFS--SQGETEEVFDLIHEMADKGVHLDQ 664 (721)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 664 (721)
+.++...|++++|+..|+++++. .|+ ...+..++.++. ..+++++|+..|+++.. +.|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence 88899999999999999998874 222 123445566664 45778888888888755 44543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.4e-10 Score=109.76 Aligned_cols=209 Identities=9% Similarity=-0.001 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHh
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS---FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VNIYA 139 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 139 (721)
.+...+..++..+.+.|++++|+..|++++... |.+ ..++..++.++.+.|++++|...|+.+++..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 467788888888888899999999999888875 444 667888888888889999998888888876442 22456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 004976 140 FNLILKGFCR--------KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYS 211 (721)
Q Consensus 140 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 211 (721)
+..++.++.. .|++++|+..|+++++.. +.+......+.... ..... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 7777888888 888889999888888763 22333332221110 00000 011234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhHCCCCC--CccchHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCc--
Q 004976 212 TLMDGLCKDGRVDEAMGLLEEMKAKGLDA--DVVVYSALISGFCSN----------GSFDKGKKLFDDMLEKGISPNV-- 277 (721)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-- 277 (721)
.++..+.+.|++++|+..|+++++..+.. ....+..++.+|... |++++|...|+++++. .|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 55666666777777777777766653321 123556666666654 6667777777777665 2332
Q ss_pred --chHHHHHHHHHhcCCHHH
Q 004976 278 --VTYNSLMHCLCKIGQWKE 295 (721)
Q Consensus 278 --~~~~~l~~~~~~~g~~~~ 295 (721)
.+...+..++...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 234444444544444443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.9e-10 Score=108.76 Aligned_cols=191 Identities=10% Similarity=0.078 Sum_probs=118.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-hh
Q 004976 451 SGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPN---SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGND-PT-LF 525 (721)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 525 (721)
+.+...+...+..+...|++++|+..|+++++..+. + ...+..++.++...|++++|+..|+++++..+. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566666666677777777777777777665433 2 455666666677777777777777776665321 11 33
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 004976 526 DYNALMASLCK--------ESSLEQAKRLFIEIRNANCEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALT 596 (721)
Q Consensus 526 ~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 596 (721)
.+..++.++.. .|++++|+..|++++... |+. .....+.. +..+.. .....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~----~~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA----KLARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH----HHHHH
Confidence 45556666666 666666666666666643 221 11111100 000000 00112
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHcCCCCC
Q 004976 597 YSTLIHRFLRFGLLSDAKSVYQKMVASGHKP---NACVYDSLLKGFSSQ----------GETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~ 663 (721)
+..++.+|...|++++|+..|+++++.. |. ....+..++.+|... |++++|...++++++ ..|+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 227 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPD 227 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCC
Confidence 4677888899999999999999988752 22 356788888888866 888999999999988 5666
Q ss_pred HH
Q 004976 664 QE 665 (721)
Q Consensus 664 ~~ 665 (721)
..
T Consensus 228 ~~ 229 (261)
T 3qky_A 228 SP 229 (261)
T ss_dssp CT
T ss_pred Ch
Confidence 53
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=2.5e-11 Score=103.25 Aligned_cols=141 Identities=9% Similarity=-0.036 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 43 KPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFAL 122 (721)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 122 (721)
...|++++|+..|++++..++. +...+..++.+|.+.|++++|+..|+++++.+ |.+..++..++.++...|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3557888888888888776544 55566778888888888888888888888875 677778888888888888888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004976 123 GVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIEL-FGEIKSNGVSPDNCSYNTIVNGLCKAKR 187 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 187 (721)
..|+.+++.++ .++.++..++..|.+.|++++|... ++++.+.. |.+..+|......+...|+
T Consensus 86 ~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888887753 3677888888888888887766554 47777663 4456667666666666654
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=7.1e-11 Score=127.67 Aligned_cols=174 Identities=9% Similarity=-0.086 Sum_probs=104.5
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 004976 78 VRSKNYEYAFSVYSKMT--------CVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCR 149 (721)
Q Consensus 78 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (721)
...|++++|+..|++++ ..+ |.+...+..++.++.+.|++++|...++++++.+ +.+..++..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666666 332 4455566666666666666666666666666554 2355666666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 150 KGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGL 229 (721)
Q Consensus 150 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 229 (721)
.|++++|+..|+++++.+ +.+...|..+..+|.+.|++++ +..|++....+ +.+...|..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666653 3345566666666666666666 66666666543 23445666666666666666666666
Q ss_pred HHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 230 LEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
|+++.+.++. +..++..++.++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 6666654332 45556666666555443
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=1.4e-10 Score=105.01 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSG----------------LIEVFVQTQKPKFALGVIGLIL 129 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~ 129 (721)
+.+.+...+..+...|++++|+..|++++..+ |.+...+.. ++.++.+.|++++|...|+.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556666666777777777777766654 334444444 5555555555555555555555
Q ss_pred HCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 004976 130 KRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKR--FKEALDILPDMEAVGCCPNL 207 (721)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 207 (721)
+.+ +.+..++..++..+...|++++|+..|+++++.+ |.+..+|..+..+|...|+ ...+...+...... .|..
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQ 157 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cchh
Confidence 443 2244555555555555555555555555555442 3344445555444433322 22233333333211 1111
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhH
Q 004976 208 ITYSTLMDGLCKDGRVDEAMGLLEEMKA 235 (721)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (721)
..+.....++...|++++|+..|+++++
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222333334444555555555555544
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=1.5e-10 Score=104.84 Aligned_cols=190 Identities=11% Similarity=0.061 Sum_probs=125.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004976 454 LVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMAS 533 (721)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (721)
...+...+..+...|++++|+..|+++++..+. +...+... ..... ..........++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHH
Confidence 344455556666777777777777777765322 22222110 00000 00011223347888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--Hh
Q 004976 534 LCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL--LS 611 (721)
Q Consensus 534 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~ 611 (721)
+.+.|++++|+..|+++++.+ +.+...+..++.++...|++++|+..|+++++.. |.+...+..++.+|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 889999999999999998865 2356788889999999999999999999998854 4556788888888876654 44
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
.+...++++.. .+|....+...+.++...|++++|+..|+++++ +.|+......
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 55666666643 233334566677788888999999999999988 7887654443
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1e-11 Score=105.62 Aligned_cols=144 Identities=8% Similarity=-0.029 Sum_probs=91.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004976 530 LMASLCKESSLEQAKRLFIEIRNANCEPD-VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG 608 (721)
Q Consensus 530 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 608 (721)
|+.++...|++++|+..+++..... |+ ...+..++..|...|++++|++.|+++++.. |.+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445555667777777776665522 32 2345566777777777777777777777743 445567777777777777
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 004976 609 LLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDL-IHEMADKGVHLDQELTSTILVCLCNISE 679 (721)
Q Consensus 609 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 679 (721)
++++|+..|+++++.+ |.++..|..++.+|.+.|++++|.+. ++++++ +.|++.....+...+....|
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 7777777777777753 55667777777777777777665544 467776 66766665555555544333
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.4e-10 Score=125.38 Aligned_cols=174 Identities=7% Similarity=-0.073 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004976 465 LTAGIIDKALEMWKHLL--------ELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCK 536 (721)
Q Consensus 465 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (721)
...|++++|++.+++++ +..+. +...+..++.++...|++++|+..++++++..+ .+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 45566666666666665 33222 445566666666666666666666666665532 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 004976 537 ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSV 616 (721)
Q Consensus 537 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (721)
.|++++|+..|+++++.+ +.+...+..++.++...|++++ ++.|+++++.+ +.+...|..++.++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666643 1234556666666666666666 66666666643 33445666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004976 617 YQKMVASGHKPNACVYDSLLKGFSSQGE 644 (721)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 644 (721)
|+++++.+ +.+...+..++.++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 66666542 3345556666666555444
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=4.8e-09 Score=99.35 Aligned_cols=226 Identities=8% Similarity=-0.024 Sum_probs=167.8
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 004976 433 DRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAG--IIDKALEMWKHLLELGHVPNSVTYSSMIDGF----CKI---G 503 (721)
Q Consensus 433 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 503 (721)
...++|+..++.++..+ |.+...|+.-...+...+ ++++++..++.++..+++ +...|+.-..++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 33467888888887775 556677777777777777 888888888888887665 666666655555 445 6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------H
Q 004976 504 MLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLE--QAKRLFIEIRNANCEPDVVSFNTMINGTLKAGD------L 575 (721)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 575 (721)
++++++.+++++.+..+ -+..+|+.-..++.+.|.++ ++++.++++++.++ -|...|+.........+. +
T Consensus 125 ~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 78888888888888743 36777777777777778777 88888888888663 366788877777777776 8
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 004976 576 QSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSD-AKSVYQKMVASG--HKPNACVYDSLLKGFSSQGETEEVFDLI 652 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 652 (721)
+++++++++++... +.|...|+.+...+.+.|+..+ +..+++++.+.+ .+.++..+..++.++.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 88999999888864 5567788888888888887444 556777666532 1457778888889998899999999999
Q ss_pred HHHHHcCCCCCH
Q 004976 653 HEMADKGVHLDQ 664 (721)
Q Consensus 653 ~~~~~~~~~p~~ 664 (721)
+.+.+. +.|..
T Consensus 282 ~~l~~~-~Dpir 292 (306)
T 3dra_A 282 DLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHT-TCGGG
T ss_pred HHHHhc-cChHH
Confidence 998753 45643
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=1.6e-08 Score=103.95 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 437 EAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMR 516 (721)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (721)
.+..+|++++... +.++..|...+..+...|+.+.|..++++++.. +. +...+.. |......++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHH
Confidence 3455666666543 455666666666666777777777777777766 32 3333222 1111111111 11111
Q ss_pred HcC-----------C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHH
Q 004976 517 VSG-----------N-DPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAG-DLQSARELYN 583 (721)
Q Consensus 517 ~~~-----------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 583 (721)
+.- . .....+|...+....+.++.+.|+.+|+++ +. ...+...|...+..-...+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 011245666666666777899999999988 32 1233444443333322333 6899999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 584 NMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+++.. +.++..+...++.....|+.+.|+.+|+++ ......|...+..-...|+.+.+..+++++.+
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 988852 334555666777777889999999999887 23577888888777788999999888888774
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=1.7e-09 Score=98.08 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 004976 472 KALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKES----SLEQAKRLF 547 (721)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 547 (721)
+|+..|++..+.+ +...+..+...|...+++++|+..|++..+.+ +...+..++..|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 55566666666666666666666666666553 44555666666665 4 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh----cCCHhHHHHH
Q 004976 548 IEIRNANCEPDVVSFNTMINGTLK----AGDLQSARELYNNMLQMGLPPD---ALTYSTLIHRFLR----FGLLSDAKSV 616 (721)
Q Consensus 548 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~ 616 (721)
+++.+.+ +...+..++..|.. .+++++|+.+|+++.+.+ +. ...+..|+.+|.. .+++++|+..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7776643 55566667776665 677777777777777654 32 5666677777776 6677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcC-C-----ChhHHHHHHHHHHHcC
Q 004976 617 YQKMVASGHKPNACVYDSLLKGFSSQ-G-----ETEEVFDLIHEMADKG 659 (721)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 659 (721)
|+++.+. +.++..+..++..|... | ++++|..+++++.+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777765 23445666677776543 3 7777777777777654
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=1.7e-09 Score=98.16 Aligned_cols=174 Identities=14% Similarity=0.028 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004976 437 EAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIG----MLNIAKGIF 512 (721)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 512 (721)
+|+..|++..+.| ++..+..+...|...+++++|+..|+++.+.+ +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777776654 66777777777777788888888888877754 56666777777766 5 788888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc----CCCHHHHHHH
Q 004976 513 SKMRVSGNDPTLFDYNALMASLCK----ESSLEQAKRLFIEIRNANCEPD---VVSFNTMINGTLK----AGDLQSAREL 581 (721)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~ 581 (721)
++..+.+ +...+..++.+|.. .+++++|+.+|+++.+.+ ++ ...+..|+..|.. .+++++|+.+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8877653 55667777777776 778888888888888755 32 5677788888877 7788888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc-C-----CHhHHHHHHHHHHHCC
Q 004976 582 YNNMLQMGLPPDALTYSTLIHRFLRF-G-----LLSDAKSVYQKMVASG 624 (721)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 624 (721)
|+++.+. +.+...+..|+.+|... | ++++|+..|+++.+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888874 34556777788877653 3 7888988888888876
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=7.7e-09 Score=96.62 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=122.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 473 ALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGND-PTLFDYNALMASLCKESSLEQAKRLFIEIR 551 (721)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 551 (721)
|+..+++.+..+ .++...+..++.++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666554 334555567777777788888888888877665431 245566677778888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 552 NANCEP-----DVVSFNTMING--TLKAG--DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 552 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
+.. | +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 643 5 23444445444 33233 788888888887663 35422222233377788888888888886654
Q ss_pred CC---------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 623 SG---------HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 623 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
.. -+.++.++..++.+....|+ +|.+++.++.+ ..|+++....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHH
Confidence 20 14566777677767666776 77888888887 6777665443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=2.9e-09 Score=97.79 Aligned_cols=189 Identities=8% Similarity=-0.003 Sum_probs=121.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 004976 453 NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPN--SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTL--FDYN 528 (721)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 528 (721)
++..+..++..+...|++++|+..|+++++..+... ...+..++.++.+.|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445667777788888888888888888887654322 356777888888888888888888888876432111 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhH----------
Q 004976 529 ALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDA-LTY---------- 597 (721)
Q Consensus 529 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~---------- 597 (721)
.++.++...+.. .+ ..+..+...+...|++++|+..|+++++. .|+. ..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 555555442210 00 01111222233445555555555555553 2222 111
Q ss_pred -------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 598 -------STLIHRFLRFGLLSDAKSVYQKMVASGHKPNA---CVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 598 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
..++..+...|++++|+..|+++++.. |.++ ..+..++.++.+.|++++|.+.++.+.. ..|+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 356778889999999999999999862 3333 5788899999999999999999999887 4454
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=8.9e-10 Score=91.86 Aligned_cols=129 Identities=19% Similarity=0.303 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFL 605 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (721)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666777777777777777776644 2345566667777777777777777777777653 445566777777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 606 RFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..|++++|.+.++++.... +.+...+..++.++...|++++|...++++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888777653 45667777778888888888888888887776
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3e-08 Score=102.03 Aligned_cols=124 Identities=13% Similarity=0.052 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004976 456 TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIG-MLNIAKGIFSKMRVSGNDPTLFDYNALMASL 534 (721)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (721)
.|...+....+.++.+.|..+|+++ .. +..+...|...+..-...+ +.+.|..+|+...+..+ .++..+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3444455554555666666666666 22 1223334433222222222 46667777776666421 1233444455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 535 CKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 535 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
.+.|+.+.|+.+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777777776652 2445566666555566777777776666654
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=2.2e-09 Score=98.57 Aligned_cols=186 Identities=8% Similarity=-0.015 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--HhHH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS---FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNI--YAFN 141 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 141 (721)
...+..++..+.+.|++++|+..|++++... |.+ ..++..++.++.+.|++++|+..|+.+++..+.... .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445555555666666666666666665543 111 234555566666666666666666666554333111 2333
Q ss_pred HHHHHHH------------------hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004976 142 LILKGFC------------------RKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGC 203 (721)
Q Consensus 142 ~l~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 203 (721)
.++.++. ..|++++|+..|+++++.. |.+..++....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH----
Confidence 3443333 3577888888888888762 22333332221110 0000000
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCC--ccchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 204 CPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDAD--VVVYSALISGFCSNGSFDKGKKLFDDMLEKG 272 (721)
Q Consensus 204 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 272 (721)
.....++..+.+.|++++|+..|+++++..+... ..++..++.+|.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123466778888999999999998887643311 2567888888999999999999998888764
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.2e-08 Score=95.27 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=110.9
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 438 AVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKALEMWKHLLELGH-VPNSVTYSSMIDGFCKIGMLNIAKGIFSKMR 516 (721)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (721)
|+..+++..+.+ +++...+..++.++...|++++|++.+.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 44555556667777777777777777777766543 1255666677777777777777777777776
Q ss_pred HcCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 517 VSGNDP-----TLFDYNALMAS--LCKES--SLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 517 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
+. .| +..+...++.+ ....| ++.+|..+|+++.... |+......+..++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 44 23444444444 22233 7777777777776533 4422223333367777778888777776554
Q ss_pred CC---------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 588 MG---------LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 588 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.. -+.++.++..++.+....|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 03345566566666666675 777777777775
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=3.9e-10 Score=99.07 Aligned_cols=162 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH-H
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG-F 147 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 147 (721)
.+..++..+.+.|++++|+..|++++..+ |.+...+..++.++...|++++|...++.++...+ ++......... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34555666666666666666666666554 45556666666666666666666666666654432 33332222211 1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHH
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCP-NLITYSTLMDGLCKDGRVDEA 226 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 226 (721)
...+....|+..++++.+.. +.+...+..+..++...|++++|+..|+++......+ +...+..++..+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222234555566555542 3345555556666666666666666666655543111 123455555556566666666
Q ss_pred HHHHHHHh
Q 004976 227 MGLLEEMK 234 (721)
Q Consensus 227 ~~~~~~~~ 234 (721)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=7.4e-10 Score=90.58 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=87.6
Q ss_pred CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 004976 556 EPDV-VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDS 634 (721)
Q Consensus 556 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 634 (721)
.|+. ..+...+..|.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++.+ +.+...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 3443 366777888888888888888888888754 4566788888888888888888888888888864 667788888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 635 LLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 635 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
++.++...|++++|++.|+++++ +.|++......+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence 88888888888888888888888 67766655544443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=1.2e-09 Score=104.48 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG 146 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (721)
.+.+..++..+.+.|++++|+..|++++..+ |.+..++..++.++.+.|++++|...++.+....+. ...........
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHHH
Confidence 3444444555555555555555555555443 344444455555555555555555555544433221 11112222222
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCh
Q 004976 147 FCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPN---LITYSTLMDGLCKDGRV 223 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~ 223 (721)
+...++.+.|+..++++.+.. +.+...+..+..++...|++++|+..|.++.... |+ ...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCC
Confidence 334444444444444444432 3334444444444445555555555554444432 21 23344444444444444
Q ss_pred hHHHHHHHHH
Q 004976 224 DEAMGLLEEM 233 (721)
Q Consensus 224 ~~A~~~~~~~ 233 (721)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 4444444433
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=1.2e-09 Score=116.37 Aligned_cols=154 Identities=8% Similarity=-0.068 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
.|++++|++.|++++..++. +...|..++..+...|++++|+..|+++++.+ |.+...+..++.++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36889999999999988755 78899999999999999999999999999885 67788899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKA---KRFKEALDILPDMEAV 201 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 201 (721)
++++++.+ +.+..++..++..|...|++++|...|+++.+.+ +.+...+..+..++... |++++|.+.+++....
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999875 4478889999999999999999999999998874 45677888888899998 9999999999998876
Q ss_pred C
Q 004976 202 G 202 (721)
Q Consensus 202 ~ 202 (721)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 112
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.12 E-value=1.7e-08 Score=96.35 Aligned_cols=186 Identities=10% Similarity=0.038 Sum_probs=149.1
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSK-NYEYAFSVYSKMTCVHIFPSFLSLSGLIE 110 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 110 (721)
++..++++++.... ..++|+++++.++..+|. +..+|+....++...| .+++++.+++.++..+ |.+..+|+....
T Consensus 55 ~~~~~~r~~~~~~e-~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEE-KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTC-CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 35667788877543 557899999999999877 8899999999999999 5999999999999986 788889988888
Q ss_pred HHHhc-C-ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCChhhHHHHHH
Q 004976 111 VFVQT-Q-KPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVN--------KAIELFGEIKSNGVSPDNCSYNTIVN 180 (721)
Q Consensus 111 ~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~ 180 (721)
++... + ++++++.+++.+++.+ +.+..+|+.-...+.+.|.++ +++..++++++.+ +.|..+|+....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~ 209 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 88887 7 8999999999999876 447888887777776666666 8889999888875 557788888888
Q ss_pred HHHhcCC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 004976 181 GLCKAKR-------FKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRV 223 (721)
Q Consensus 181 ~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 223 (721)
++.+.++ ++++++++.++.... +-|...|+.+-..+.+.|+.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 8777776 678888888877764 44667777766666665543
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=3.5e-09 Score=88.20 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGF 147 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (721)
.+|..++..+...|++++|+.+|++++..+ +.+...+..++..+...|++++|...++.+.+.+ +.+...+..++..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356677777777788888888888777664 4556666677777777777777777777776654 33556666667777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 148 CRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 148 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777766653 334556666666666777777777776666553
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=1.8e-09 Score=103.16 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004976 488 NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSF-NTMI 566 (721)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 566 (721)
+...+..++..+...|++++|...|+++....+ .+...+..++..+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 445556666666777777777777777766632 245566677777777777777777777766543 444322 2223
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCC
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN--ACVYDSLLKGFSSQGE 644 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 644 (721)
..+...++.++|+..+++++... |.+...+..++.++...|++++|++.+++++... +.+ ...+..++.++...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 33556666777777777777753 4456677777777777777777777777777753 222 5677777777777777
Q ss_pred hhHHHHHHHHHHH
Q 004976 645 TEEVFDLIHEMAD 657 (721)
Q Consensus 645 ~~~A~~~~~~~~~ 657 (721)
.++|...+++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7777777776653
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=1.7e-09 Score=115.11 Aligned_cols=152 Identities=13% Similarity=0.015 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004976 468 GIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLF 547 (721)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 547 (721)
|++++|+..++++++..+. +...+..++..+...|++++|...++++.+..+ .+...+..++.++...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666655433 455666666666666666666666666665532 23555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHhHHHHHHHHHHHC
Q 004976 548 IEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRF---GLLSDAKSVYQKMVAS 623 (721)
Q Consensus 548 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 623 (721)
+++++.+ +.+...+..++.++...|++++|++.++++.+.. +.+...+..++.++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666543 2234556666666666666666666666666642 33445566666666666 6666666666666655
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=1.5e-09 Score=95.29 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 577 SARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHK-PNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
+|+..++++++.. |.+...+..++.++...|++++|+..|+++++.... .+...+..++.++...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3455555555532 223455555555556666666666666665554211 12345555555566666666666665555
Q ss_pred H
Q 004976 656 A 656 (721)
Q Consensus 656 ~ 656 (721)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=6.2e-09 Score=95.89 Aligned_cols=197 Identities=9% Similarity=-0.043 Sum_probs=147.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------
Q 004976 466 TAGIIDKALEMWKHLLELGHVPNSVTYSSM-------IDGFCKIGMLNIAKGIFSKMRVSGNDPT--------------- 523 (721)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 523 (721)
..++...|.+.|.++.+..+. ....|..+ ..++...++..+++..++..... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578888888888888887655 66777766 56666666666666666665542 111
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--h
Q 004976 524 -------LFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD--A 594 (721)
Q Consensus 524 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 594 (721)
......++..+...|++++|.++|+.+...+ |+......++..+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456778889999999999998887644 555577777788999999999999998776532 221 3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 595 LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKP--NACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
..+..++.++...|++++|+..|+++......| ....+...+.++.+.|+.++|...|+++.. ..|+ ......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHH
Confidence 477889999999999999999999998643214 445788899999999999999999999998 6787 4444333
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=3.5e-09 Score=102.55 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=145.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004976 395 FGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGISGNLVTFNILIGKYLTAGIIDKAL 474 (721)
Q Consensus 395 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (721)
.|++++|.++++++.+..+. . + +...++++.|...|.++ +..|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 45666777777766653221 0 0 11146667777666654 34566677777777
Q ss_pred HHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHHhcCCHHHHH
Q 004976 475 EMWKHLLELGHV-----PNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN---DPT--LFDYNALMASLCKESSLEQAK 544 (721)
Q Consensus 475 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~ 544 (721)
..|.++.+.... .....+..++.+|...|++++|+..|++.++... .+. ..++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777776654211 0134667777788888888888888887765311 111 3467778888888 9999999
Q ss_pred HHHHHHHHcCCC---C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHhcCCHhHHH
Q 004976 545 RLFIEIRNANCE---P--DVVSFNTMINGTLKAGDLQSARELYNNMLQMG----LPPD-ALTYSTLIHRFLRFGLLSDAK 614 (721)
Q Consensus 545 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~ 614 (721)
..|++++..... + ...++..++..|...|++++|+..|+++++.. ..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999888763111 1 13467888899999999999999999988741 1111 235667777888889999999
Q ss_pred HHHHHHHHCCC--CCC--HHHHHHHHHHHHcCCChhHHHH
Q 004976 615 SVYQKMVASGH--KPN--ACVYDSLLKGFSSQGETEEVFD 650 (721)
Q Consensus 615 ~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~ 650 (721)
..|++++ ... ... ...+..++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999988 521 111 12344555545 5677766655
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=2.5e-09 Score=87.40 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....+...+..+.+.|++++|+..|+++++.+ |.+..++..++.++...|++++|+..++.+++.+ +.+..++..++.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 45677788888999999999999999988876 6778888888888888899999988888888875 347788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVN 180 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 180 (721)
++...|++++|+..|+++++.. |.+..++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888864 445555555443
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=6e-09 Score=87.70 Aligned_cols=103 Identities=9% Similarity=-0.021 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
...+..++..+...|++++|+..|++++... |.+...|..++.++...|++++|++.|++++... |.++..|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3467777888888888888888888888854 4556788888888888888888888888888864 5667788888888
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCHH
Q 004976 639 FSSQGETEEVFDLIHEMADKGVHLDQE 665 (721)
Q Consensus 639 ~~~~g~~~~A~~~~~~~~~~~~~p~~~ 665 (721)
|...|++++|...|+++++ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888888887 567665
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=7.3e-09 Score=100.27 Aligned_cols=222 Identities=14% Similarity=0.076 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVR-SKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
.|++.+|.++++++.+..+. + +.+ .+++++|...|+++ +..+...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46788888888887654321 1 111 35666666665554 234555566666666
Q ss_pred HHHHHHHCCCC-----cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 004976 124 VIGLILKRGFV-----VNIYAFNLILKGFCRKGEVNKAIELFGEIKSN----GVSPD--NCSYNTIVNGLCKAKRFKEAL 192 (721)
Q Consensus 124 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~ 192 (721)
.|.++++.... ....++..++..|...|++++|+..|++.++. | .+. ..++..+..+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66655432111 11335566666666667777776666665432 1 111 2455666666666 7777777
Q ss_pred HHHHHHHhCCCC---C--CHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCC----CC-ccchHHHHHHHHhcCChhHHH
Q 004976 193 DILPDMEAVGCC---P--NLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLD----AD-VVVYSALISGFCSNGSFDKGK 262 (721)
Q Consensus 193 ~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~ 262 (721)
..|++....... + ...++..++..+.+.|++++|+..|+++++.... +. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 0 1345666777777777777777777777653111 11 225666667777778888888
Q ss_pred HHHHHHHhCCCCCCc------chHHHHHHHHHhcCCHHHHHH
Q 004976 263 KLFDDMLEKGISPNV------VTYNSLMHCLCKIGQWKEAIA 298 (721)
Q Consensus 263 ~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 298 (721)
..|++.+ . .|+. .....++..+ ..|+.+.+.+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887777 4 2221 1233344444 5566666555
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.9e-09 Score=99.30 Aligned_cols=187 Identities=12% Similarity=-0.023 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCCH--------------
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSL-------MEALVRSKNYEYAFSVYSKMTCVHIFPSF-------------- 102 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------- 102 (721)
..+++..|.+.|.++...+|. ..+.|..+ +..+.+.++..+++..+++.+... |..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~--p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS--MSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC--GGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC--hhhhhhhhccCCccccc
Confidence 367999999999999999877 89999988 788888888888888888887732 111
Q ss_pred --------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--h
Q 004976 103 --------LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPD--N 172 (721)
Q Consensus 103 --------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 172 (721)
......+..+...|++++|.+.|+.+...++ .+. ....+...+.+.+++++|+..|+...+.. .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS-EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC-HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345556666666666666665544332 122 44445555566666666666665444321 110 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHhHC
Q 004976 173 CSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPN--LITYSTLMDGLCKDGRVDEAMGLLEEMKAK 236 (721)
Q Consensus 173 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 236 (721)
..+..+..++...|++++|+..|++.......|. .......+.++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2444555555666666666666665553221122 223444555555566666666666666554
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=2.2e-09 Score=90.45 Aligned_cols=128 Identities=13% Similarity=0.009 Sum_probs=95.9
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEV 111 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (721)
.+...|..++... +. |++++..+|. +...+..++..+.+.|++++|+..|++++..+ |.+...|..++.+
T Consensus 10 ~~~~~l~~~~~~~-~~-------l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~ 79 (151)
T 3gyz_A 10 SISTAVIDAINSG-AT-------LKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHHHTS-CC-------TGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CC-------HHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455555555522 22 3444444433 66778888888888888888888888888876 6778888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDN 172 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 172 (721)
+...|++++|...|+++++.++ .++.++..++.+|...|++++|+..|+++++. .|+.
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 8888888888888888888764 36778888888888888888888888888876 4554
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=2.2e-07 Score=88.81 Aligned_cols=189 Identities=9% Similarity=0.011 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHH
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQ-KPKFALGV 124 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~ 124 (721)
.+|.+|...|..++... +..++|+.++++++..+ |.+..+|+....++...| .+++++..
T Consensus 51 ~~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~ 111 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRL 111 (349)
T ss_dssp HHHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46777777666655543 33458999999999986 778889999999998999 59999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHH
Q 004976 125 IGLILKRGFVVNIYAFNLILKGFCRK-G-EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFK--------EALDI 194 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~ 194 (721)
++.++..++ .+..+|+.-...+... + ++++++.+++++++.+ +.|..+|+.-..++.+.|.++ ++++.
T Consensus 112 ~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 112 MNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 999998865 4888888888777776 7 8899999999999875 567788887776666666666 88888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCC-------hhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 195 LPDMEAVGCCPNLITYSTLMDGLCKDGR-------VDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 195 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
++++.... +-|..+|+.....+.+.++ ++++++.+++++...+. |..+|+.+-..+.+.|+
T Consensus 190 ~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 190 CNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 88888765 4477788888888777776 57788888877776555 77777776666666554
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=1.9e-08 Score=91.61 Aligned_cols=128 Identities=8% Similarity=-0.009 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRF 607 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (721)
..++..+...|++++|+..|+++. .|+...+..++.++...|++++|+..++++++.. +.+...+..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344555556666666666666553 3455566666666666666666666666666643 33455666666666666
Q ss_pred CCHhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 608 GLLSDAKSVYQKMVASGHKPN----------------ACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 608 g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
|++++|++.|+++++.. +.+ ...+..++.++...|++++|...++++++ +.|+
T Consensus 85 ~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred ccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCcc
Confidence 66666666666666642 222 25667777777777777777777777776 4553
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=1.8e-07 Score=89.78 Aligned_cols=164 Identities=11% Similarity=-0.005 Sum_probs=121.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 004976 494 SMIDGFCKIGMLNIAKGIFSKMRVSGN-DPTL----FDYNALMASLCKESSLEQAKRLFIEIRNANCE-PD----VVSFN 563 (721)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 563 (721)
..+..+...|++++|..++++..+... .|+. ..+..++..+...+++++|+..|++++..... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788889999988888876422 1221 12334677777788999999999998873222 22 23688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHHHH
Q 004976 564 TMINGTLKAGDLQSARELYNNMLQM-----GLPPD-ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS----GHKP-NACVY 632 (721)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~ 632 (721)
.++.+|...|++++|+.+|+++++. +..+. ..++..++.+|...|++++|++.++++++. +..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999998842 11122 247789999999999999999999998864 1122 26789
Q ss_pred HHHHHHHHcCCC-hhHHHHHHHHHHH
Q 004976 633 DSLLKGFSSQGE-TEEVFDLIHEMAD 657 (721)
Q Consensus 633 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 657 (721)
..++.++.+.|+ +++|...+++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999875
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=2.4e-09 Score=90.46 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+...+..++..+...|++++|+..|++++... +.+...|..++.++...|++++|++.|++++..+ +.++..+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34466677778888888888888888887753 4566777888888888888888888888888764 556777888888
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 638 GFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
+|...|++++|...|+++++ +.|+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~--~~p~ 121 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE--LIAN 121 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHTT
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 88888888888888888877 4444
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=4.9e-09 Score=88.57 Aligned_cols=111 Identities=12% Similarity=-0.079 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 53 SLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 132 (721)
..|++++..+|. +...+..++..+.+.|++++|+..|++++..+ |.+...|..++.++...|++++|...|+.+++.+
T Consensus 8 ~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456777776644 67788888999999999999999999998876 6788888899999999999999999999998875
Q ss_pred CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 133 FVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
+ .++.++..++.+|...|++++|+..|+++++.
T Consensus 86 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 I-XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 46778888889999999999999999988875
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=4.5e-09 Score=100.05 Aligned_cols=195 Identities=11% Similarity=0.014 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...+..++..+.+.|++++|+..|++++... |.+...+..++.++...|++++|...++.+++.+ +.+..++..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778888888899999999999999988875 6677888888888888899999998888888775 346778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDE 225 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 225 (721)
+|...|++++|+..|+++.+.+ +.+...+...+....+. .++..... ......+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRWNS-IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888889988888888877652 11111111112111111 11111111 2222223344443333332 2577778
Q ss_pred HHHHHHHHhHCCCCCCccchHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004976 226 AMGLLEEMKAKGLDADVVVYSALISGFCSN-GSFDKGKKLFDDMLE 270 (721)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 270 (721)
|++.++.+.+..+. +......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87777777665332 334444444444444 557777777777654
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=7.8e-09 Score=90.85 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=97.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCH--h
Q 004976 535 CKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHR-FLRFGLL--S 611 (721)
Q Consensus 535 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 611 (721)
...|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888877754 3356678888888888888888888888888753 4456677778887 6788887 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
+|+..+++++..+ +.+...+..++.++...|++++|...++++++ ..|+......++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCccHHHHHH
Confidence 8888888888764 55677888888888888888888888888887 5665544444443
No 131
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.89 E-value=8.8e-07 Score=84.27 Aligned_cols=164 Identities=8% Similarity=-0.019 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-
Q 004976 49 AEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKN----------YEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK- 117 (721)
Q Consensus 49 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 117 (721)
++|+.+++.++..+|. +..+|+.-..++...+. +++++.+++.++..+ |.+..+|.....++...++
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 5788888888888766 77777776666665554 577788888887765 6677777777777777773
Q ss_pred -hhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------
Q 004976 118 -PKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGE-VNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKA---------- 185 (721)
Q Consensus 118 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 185 (721)
+++++.+++.+++.+ +.|..+|+.-...+...|. +++++..++++++.+ +.|..+|+....++...
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 677888888887775 3477777777666667776 477777777777765 45666777666655544
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 186 ----KRFKEALDILPDMEAVGCCPNLITYSTLMDGL 217 (721)
Q Consensus 186 ----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 217 (721)
+.++++++++.+..... +-|..+|+.+-..+
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 23555666666655543 33444554443333
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=2.5e-07 Score=88.83 Aligned_cols=167 Identities=11% Similarity=-0.005 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 004976 491 TYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPT-----LFDYNALMASLCKESSLEQAKRLFIEIRNANC---EPD--VV 560 (721)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~ 560 (721)
.+...+..+...|++++|.+.+++..+...... ...+..++..+...|++++|+..+++++.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556667778888888888877776532211 11234456667788899999999988876321 112 34
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC----CCC-CH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM--GLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASG----HKP-NA 629 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 629 (721)
+++.++..|...|++++|+.+++++.+. ..+.+ ..++..++.+|...|++++|++.++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732 11221 2578899999999999999999999987641 111 26
Q ss_pred HHHHHHHHHHHcCCChhHH-HHHHHHHHH
Q 004976 630 CVYDSLLKGFSSQGETEEV-FDLIHEMAD 657 (721)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 657 (721)
.+|..++.+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777888764
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.8e-08 Score=88.45 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCh--hHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEV-FVQTQKP--KFA 121 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~A 121 (721)
.|++++|+..|++++..++. +..+|..++.++...|++++|+..|++++..+ |.+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 57899999999999988755 88999999999999999999999999999875 6678888899988 7899998 999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 122 LGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNG 167 (721)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 167 (721)
...++.+++.+ +.+..++..++..+...|++++|...|+++.+..
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999875 4477888999999999999999999999999874
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=3.7e-08 Score=80.71 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
...+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..++++++.+ +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3466777788888888888888888888854 4566788888888888888888888888888864 5677888888888
Q ss_pred HHcCCChhHHHHHHHHHHHcCCC------CCHHHHHHHHHH
Q 004976 639 FSSQGETEEVFDLIHEMADKGVH------LDQELTSTILVC 673 (721)
Q Consensus 639 ~~~~g~~~~A~~~~~~~~~~~~~------p~~~~~~~ll~~ 673 (721)
+...|++++|...++++++ +. |+.......+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 82 QIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHH
Confidence 8888888888888888887 55 666555554443
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=6.2e-08 Score=83.91 Aligned_cols=130 Identities=10% Similarity=0.039 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRF 604 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (721)
..+..++..+...|++++|...|++++... +.+...+..++.++...|++++|+..++++++.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566677777888888888888777754 2356677777888888888888888888887753 44567777888888
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHcCCChhHHHHHHHHHHH
Q 004976 605 LRFGLLSDAKSVYQKMVASGHKPNACVYDSLLK--GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 657 (721)
...|++++|.+.+++++... +.+...+..+.. .+...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887763 445555543333 36777888888888776643
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=6.5e-08 Score=83.80 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG 146 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (721)
...+..++..+...|++++|+..|++++... |.+...+..++.++...|++++|...++.+++.. +.+..++..++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567778888888888888888888888765 5667778888888888888888888888887764 3467777778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 004976 147 FCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVN--GLCKAKRFKEALDILPDME 199 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~ 199 (721)
+...|++++|...|+++.+.. +.+...+..+.. .+...|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888877763 334444433333 3566677777777776553
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=8.3e-07 Score=85.12 Aligned_cols=163 Identities=10% Similarity=-0.043 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 004976 460 LIGKYLTAGIIDKALEMWKHLLELGHV-PNSV----TYSSMIDGFCKIGMLNIAKGIFSKMRVSGND-PT----LFDYNA 529 (721)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 529 (721)
.+..+...|++++|...+++..+.... ++.. .+..++..+...|++++|+..++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 456677888888888888888775322 1211 2334666667778899999999998874222 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-hhhHH
Q 004976 530 LMASLCKESSLEQAKRLFIEIRNA-----NCEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQM----GLPPD-ALTYS 598 (721)
Q Consensus 530 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 598 (721)
++.+|...|++++|+.+|+++++. +..+.. .++..++.+|...|++++|+.+++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999988841 111222 37788999999999999999999988764 11122 56788
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHH
Q 004976 599 TLIHRFLRFGL-LSDAKSVYQKMVA 622 (721)
Q Consensus 599 ~l~~~~~~~g~-~~~A~~~~~~~~~ 622 (721)
.++.++...|+ +++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999999875
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=1.7e-07 Score=85.05 Aligned_cols=128 Identities=12% Similarity=-0.025 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFC 148 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (721)
.+..++..+...|++++|+..|++++ +++..++..++.++...|++++|...++.+++.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888888888888888774 4466778888888888888888888888887765 346777888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 149 RKGEVNKAIELFGEIKSNGVSPDN----------------CSYNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 149 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
..|++++|+..|+++.+.. +.+. ..+..+..+|...|++++|...|++.....
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887753 2222 567777888888888888888888887763
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=1.9e-06 Score=82.00 Aligned_cols=192 Identities=8% Similarity=-0.007 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHH
Q 004976 470 IDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM--LNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESS-LEQAKRL 546 (721)
Q Consensus 470 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 546 (721)
+++++.+++.++..+++ +..+|..-..++...|+ +++++.+++++.+..+. +...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45666666666665544 55666665555555553 56666666666665322 45555555555555555 4666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 004976 547 FIEIRNANCEPDVVSFNTMINGTLKA--------------GDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRF----- 607 (721)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 607 (721)
+++++..++ -|...|+.....+... +.++++++++.+++... |.|...|+.+-..+...
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 666666542 2455555555444332 34667777777777643 44455555454444443
Q ss_pred ------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004976 608 ------GLLSDAKSVYQKMVASGHKPNACVYDSLLK---GFSSQGETEEVFDLIHEMADKGVHLDQELTS 668 (721)
Q Consensus 608 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (721)
+.++++++.++++++.. |.+.-.+..++. .....|..++...++.++++ +.|...-++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y 312 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL 312 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHH
Confidence 34678888888888753 333323222222 12245778888888888887 677544433
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=2.9e-09 Score=104.22 Aligned_cols=150 Identities=10% Similarity=0.020 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HhhHHHHHH
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS---------------FLSLSGLIE 110 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~ 110 (721)
.++++|+..|+.++...+. ....+..++..+.+.|++++|+..|++++... |.+ ..++..++.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655544333 56788899999999999999999999999875 333 467777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004976 111 VFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKE 190 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 190 (721)
++.+.|++++|+..++.+++.+ +.+..++..++.+|...|++++|+..|+++++.. +.+..++..+..++.+.|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765 3467777777888888888888888888877764 4456677777777777777777
Q ss_pred H-HHHHHHHH
Q 004976 191 A-LDILPDME 199 (721)
Q Consensus 191 a-~~~~~~~~ 199 (721)
+ ...|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 34555543
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=4.2e-08 Score=80.23 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC----HHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG--HKPN----ACVYD 633 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 633 (721)
..+..++..+.+.|++++|++.|+++++.. |.+...|..++.+|...|++++|++.++++++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677778888888888888888887753 4456677788888888888888888888877642 1111 24677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004976 634 SLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTS 668 (721)
Q Consensus 634 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (721)
.++.++...|++++|++.|++.++ ..|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 788888888888888888888877 556655443
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=1.6e-08 Score=84.91 Aligned_cols=110 Identities=8% Similarity=-0.113 Sum_probs=85.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004976 54 LFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF 133 (721)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 133 (721)
.|++++..+|. +...+..++..+.+.|++++|+..|++++..+ |.+...|..++.++...|++++|...|+.+++.++
T Consensus 6 ~l~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRGLSED-TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHcCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555555433 56677778888888888888888888888875 67777888888888888888888888888887753
Q ss_pred CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 134 VVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 134 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.++.++..++.+|...|++++|+..|+++++.
T Consensus 84 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 -NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888765
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=2.7e-08 Score=94.60 Aligned_cols=194 Identities=8% Similarity=0.005 Sum_probs=110.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004976 453 NLVTFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMA 532 (721)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (721)
+...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|...++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455666666677777777777777777766443 56666677777777777777777777776653 224556667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHh
Q 004976 533 SLCKESSLEQAKRLFIEIRNANCEPDVV-SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLS 611 (721)
Q Consensus 533 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 611 (721)
++...|++++|+..|+++...+ |+.. .+...+....+ ..++.. +........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 7777777777777777766532 2110 00001111110 111111 1222223344455554444432 257778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQ-GETEEVFDLIHEMAD 657 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 657 (721)
+|++.++++++.+ +.+......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888887777653 33444455555555554 567778877777654
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=3.4e-07 Score=87.83 Aligned_cols=167 Identities=11% Similarity=-0.026 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hh
Q 004976 456 TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNS-----VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN---DPT--LF 525 (721)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 525 (721)
.+...+..+...|++++|.+.+...++....... ..+..++..+...|++++|+..++++..... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777777665332111 1233455666778888899888888875421 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-Ch
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRN---ANC-EP--DVVSFNTMINGTLKAGDLQSARELYNNMLQMG----LPP-DA 594 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 594 (721)
+++.++..|...|++++|+.+|+++.. ... .+ ...++..++.+|...|++++|+.+++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888899999999999999998873 211 11 12478889999999999999999999887641 111 15
Q ss_pred hhHHHHHHHHHhcCCHhHH-HHHHHHHHH
Q 004976 595 LTYSTLIHRFLRFGLLSDA-KSVYQKMVA 622 (721)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 622 (721)
.++..++.+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777888775
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=3.3e-08 Score=82.94 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGF 639 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 639 (721)
..+..++..+...|++++|+..|++++... +.+...|..++.++...|++++|+..|++++..+ +.++..+..++.++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 456666777777888888888888877753 4456677777888888888888888888887764 55677777788888
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCH
Q 004976 640 SSQGETEEVFDLIHEMADKGVHLDQ 664 (721)
Q Consensus 640 ~~~g~~~~A~~~~~~~~~~~~~p~~ 664 (721)
...|++++|...++++++ +.|+.
T Consensus 97 ~~~g~~~~A~~~~~~al~--~~p~~ 119 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA--LAAAQ 119 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHTC
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCC
Confidence 888888888888888776 44433
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=1e-07 Score=78.84 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...|..++..+.+.|++++|+..|++++... +.+...+..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44555556666666666666666666665543 3445555555566666666666666666655543 224555555566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKA 185 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (721)
.+...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666655542 22333444444444433
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.6e-07 Score=76.55 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...+..++..+...|++++|+.+|++++... +.+..++..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 35677778888888888888888888887764 5566677777777777888888888777777654 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK 184 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (721)
.+...|++++|...++++.+.. +.+...+..+..++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 7777777777777777777653 3344455555544433
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=1.1e-07 Score=92.92 Aligned_cols=131 Identities=16% Similarity=0.023 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 004976 525 FDYNALMASLCKESSLEQAKRLFIEIRNANCEPD--------------VVSFNTMINGTLKAGDLQSARELYNNMLQMGL 590 (721)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 590 (721)
..+..++..+.+.|++++|+..|++++....... ...+..++.+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3445555555556666666666665555331111 3677888888888888888888888888854
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEV-FDLIHEMAD 657 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 657 (721)
+.+...+..++.+|...|++++|+..|+++++.. +.+...+..++.++...|++++| ...+++|..
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888899999998888888864 56777888888888888888888 456666653
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.8e-07 Score=76.20 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
.+..++..+...|++++|+++++++.+.. +.+..++..++.++...|++++|+..++++.... +.+...+..++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33344444444444444444444444321 2233344444444444444444444444444432 333444444444444
Q ss_pred cCCChhHHHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMAD 657 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~ 657 (721)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444444
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1.9e-07 Score=76.87 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFL 605 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (721)
.+..++..+...|++++|...|+++.... +.+...+..++.++...|++++|+..++++.+.. +.+...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33444444444555555555555444432 1233344444444455555555555555544432 223344444455555
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004976 606 RFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGE 644 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 644 (721)
..|++++|.+.+++++... +.+...+..++.++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554432 3344444444444444443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=1.1e-07 Score=78.66 Aligned_cols=117 Identities=8% Similarity=-0.024 Sum_probs=98.4
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004976 33 VETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVF 112 (721)
Q Consensus 33 ~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (721)
......+.+....+++++|+..|++++...+. +..++..++.++...|++++|+..|++++... +.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 33344555555678999999999999998755 78999999999999999999999999999975 67788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 004976 113 VQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGE 152 (721)
Q Consensus 113 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 152 (721)
...|++++|...++.+++..+ .+..++..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcC
Confidence 999999999999999988753 456677777777776553
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=1.8e-07 Score=77.00 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44566777777777788888888887777764 5566677777777777777777777777777654 335666777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 188 (721)
.+...|++++|...|+++.+.+ +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777776653 33555666666666655543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=2.1e-07 Score=74.97 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
...+..++..+...|++++|...++++.... +.+...+..++.++...|++++|...++++++.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666777777777777777777777643 4456677777777777778888888777777753 4567777777777
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004976 639 FSSQGETEEVFDLIHEMADKGVHLDQELTSTIL 671 (721)
Q Consensus 639 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 671 (721)
+...|++++|...++++++ ..|+.......+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK--HEANNPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHH
Confidence 7778888888888877776 556544443333
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=7.5e-08 Score=86.70 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=98.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCH
Q 004976 501 KIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNA----NCEP-DVVSFNTMINGTLKAGDL 575 (721)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 575 (721)
..|++++|.+.++.+... +......+..++..+...|++++|...+++++.. +..+ ....+..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444321 1223456666777777777777777777766651 1111 224566777778888888
Q ss_pred HHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHcCCC
Q 004976 576 QSARELYNNMLQM--GLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASG-HKPN----ACVYDSLLKGFSSQGE 644 (721)
Q Consensus 576 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~ 644 (721)
++|+..++++.+. ..+.+ ...+..++.++...|++++|...+++++... ...+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888877663 11112 2456777888888888888888888877431 0111 2346778888888888
Q ss_pred hhHHHHHHHHHHH
Q 004976 645 TEEVFDLIHEMAD 657 (721)
Q Consensus 645 ~~~A~~~~~~~~~ 657 (721)
+++|.+.++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888775
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=1.3e-07 Score=77.31 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHhH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN------IYAF 140 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 140 (721)
...+..+|..+.+.|++++|+..|++++..+ |.+..++..++.++...|++++|+..++.+++.++... ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456778888888888888888888888875 66777888888888888888888888888876532211 2356
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSY 175 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 175 (721)
..++.++...|++++|+..|++.++. .|+....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66677777777777787777777664 4554443
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=1.1e-07 Score=85.70 Aligned_cols=155 Identities=10% Similarity=-0.059 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCChh
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-----HIFPSFLSLSGLIEVFVQTQKPK 119 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 119 (721)
.|++++|.+.++.... ++.....++..++..+...|++++|+..|++++.. ..+....++..++.++...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 5788888886655544 33346778888888899999999999999888763 11223345667777777778888
Q ss_pred HHHHHHHHHHHC---CC-C--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCH
Q 004976 120 FALGVIGLILKR---GF-V--VNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGV-SPD----NCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 120 ~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 188 (721)
+|...++++++. .. . ....++..++..+...|++++|...+++..+..- ..+ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 877777776643 11 1 1234566666777777777777777776653200 011 12245555666666666
Q ss_pred HHHHHHHHHHHh
Q 004976 189 KEALDILPDMEA 200 (721)
Q Consensus 189 ~~a~~~~~~~~~ 200 (721)
++|...+++...
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=1.4e-08 Score=91.08 Aligned_cols=144 Identities=12% Similarity=-0.045 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----------------hhHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF----------------LSLSGL 108 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l 108 (721)
.++++.|.+.|+......+. ....+..++..+.+.|++++|+..|++++... +.+. ..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -----CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 34555555555533322111 45667888999999999999999999999864 3333 566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004976 109 IEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRF 188 (721)
Q Consensus 109 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 188 (721)
+.++...|++++|...++.+++.. +.+..++..++.+|...|++++|+..|+++.+.. +.+...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777664 3456677777777777777777777777776653 33455666666666555555
Q ss_pred HHHH
Q 004976 189 KEAL 192 (721)
Q Consensus 189 ~~a~ 192 (721)
.++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 4444
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=7.4e-08 Score=77.89 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSS 641 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (721)
+..++..+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++.+ |.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455566667777777777777777643 3455666677777777777777777777777653 4566677777777777
Q ss_pred CCChhHHHHHHHHHHHcCCCCC
Q 004976 642 QGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 642 ~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
.|++++|+..++++++ ..|+
T Consensus 98 ~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHH--hCcC
Confidence 7777777777777765 4454
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=7.7e-08 Score=83.11 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+...+..++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..|+++++.. +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777888888888888888888888753 4466788888888888888888888888888864 566788888888
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCHHH
Q 004976 638 GFSSQGETEEVFDLIHEMADKGVHLDQEL 666 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 666 (721)
+|...|++++|...|+++++ +.|+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~--~~p~~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE--AEGNGGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHSSSCC
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCchH
Confidence 88888888888888888887 5555433
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=3.9e-07 Score=76.98 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYD 633 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 633 (721)
+...+..++..+...|++++|+..|+++++. .|+ ...+..++.++...|++++|+..+++++... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4456666666777777777777777777763 344 4566677777777777777777777777653 44566777
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 634 SLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 634 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
.++.++...|++++|...++++++ +.|+.......+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence 777777777777777777777776 55655444444443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=1.5e-07 Score=78.35 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004976 557 PDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLL 636 (721)
Q Consensus 557 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 636 (721)
.+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|+..+++++..+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345567777777777777777777777777753 4445677777777777777777777777777764 55677777777
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 004976 637 KGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 637 ~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.++...|++++|...++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777775
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=4.8e-07 Score=73.94 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG 146 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (721)
...|..++..+.+.|++++|+..|++++..+ |.+...+..++.++...|++++|...++.+++.++ .+..++..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 4567778888888888888888888888775 66777788888888888888888888888877753 367777788888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 004976 147 FCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~~~~ 166 (721)
+...|++++|+..|+++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877765
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=7.7e-07 Score=71.52 Aligned_cols=111 Identities=7% Similarity=-0.088 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
....+..++..+...|++++|+..|++++... |.+...+..++.++...|++++|...++.+++.. +.+..++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567777888888888888888888887764 5566777777788888888888888888777764 336677777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIV 179 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 179 (721)
++...|++++|...+++..+.+ +.+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 7778888888888888777663 33444444433
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=5.9e-07 Score=73.72 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004976 563 NTMINGTLKAGDLQSARELYNNMLQMGLPPDA---LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN---ACVYDSLL 636 (721)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 636 (721)
..++..+...|++++|+..|+++.+.. +.+. ..+..++.++...|++++|+..+++++... +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345556667777777777777776642 2222 366677777777777777777777777653 333 56677777
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004976 637 KGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILV 672 (721)
Q Consensus 637 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 672 (721)
.++...|++++|...++++++ ..|+.........
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT--QYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCChHHHHHHH
Confidence 777777777777777777776 4465544443333
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=3.3e-07 Score=72.96 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKP--NACVYDSLLK 637 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 637 (721)
..+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|++.++++++.. +. +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345556666666777777777777666643 3445666667777777777777777777777653 44 5667777777
Q ss_pred HHHcC-CChhHHHHHHHHHHH
Q 004976 638 GFSSQ-GETEEVFDLIHEMAD 657 (721)
Q Consensus 638 ~~~~~-g~~~~A~~~~~~~~~ 657 (721)
++... |++++|.+.++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 77777 777777777777765
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.61 E-value=1.9e-07 Score=80.40 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--------C---------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM--------G---------LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.+...+..+.+.|++++|+..|.+++.. . -+.+...|..++.+|...|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555542 0 0223467888899999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 004976 624 GHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQE-LTSTILVC 673 (721)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~ 673 (721)
+ +.+...|..++.+|...|++++|...|+++++ +.|++. .....+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKI 140 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 5 67788999999999999999999999999998 778765 54544444
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=7.2e-07 Score=76.92 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...+..++..+.+.|++++|+..|++++... |.+...+..++.++...|++++|+..++.+++.+ +.+..++..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55677888888888888888888888888875 6677788888888888888888888888888775 346778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004976 146 GFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~ 166 (721)
+|...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888776
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=3.2e-07 Score=74.10 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGV 124 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 124 (721)
.|++++|+..|++++..+|. +..+|..++.++...|++++|+..|+++++.+ |.+...+..++.++...|++++|...
T Consensus 30 ~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445555555554444433 44444444445555555555555555444443 33444444444444444444444444
Q ss_pred HHHHHH
Q 004976 125 IGLILK 130 (721)
Q Consensus 125 ~~~~~~ 130 (721)
++.+++
T Consensus 108 ~~~al~ 113 (121)
T 1hxi_A 108 LRAWLL 113 (121)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=6.1e-07 Score=80.25 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGF 639 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 639 (721)
..+..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|++.|++++... +.+...+..++.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455566666666667777777766666642 3345566666666667777777777777666653 44556666666666
Q ss_pred HcCCChhHHH-HHHHHH
Q 004976 640 SSQGETEEVF-DLIHEM 655 (721)
Q Consensus 640 ~~~g~~~~A~-~~~~~~ 655 (721)
...|+.+++. ..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6665555554 333433
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=6e-07 Score=74.63 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLIL 144 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 144 (721)
.+...|..++..+...|++++|+..|++++..+ |.+...+..++.++...|++++|...++.+++.+ +.+..++..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888889999999999999999999998875 6677888888888999999999999999888875 34777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004976 145 KGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 145 ~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.++...|++++|+..|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888899999999888888765
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.5e-06 Score=86.15 Aligned_cols=164 Identities=8% Similarity=-0.070 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHH
Q 004976 493 SSMIDGFCKIGMLNIAKGIFSKMRVSGND-PTL----FDYNALMASLCKESSLEQAKRLFIEIRN----ANCEPD-VVSF 562 (721)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~ 562 (721)
..++..|...|++++|.+++..+...... ++. .+.+.+...+...|++++|..+++.... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 44455555555555555555544332100 010 1122233333345566666666555443 111111 2345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC--CCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCC--CC--HHH
Q 004976 563 NTMINGTLKAGDLQSARELYNNMLQM--GLP--P-DALTYSTLIHRFLRFGLLSDAKSVYQKMVAS--GHK--PN--ACV 631 (721)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~~--~~~ 631 (721)
..++..|...|++++|..+++++... +.. + ...++..++..|...|++++|..+++++... ... +. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 55666666666666666666655442 111 1 1235555666666666666666666665532 111 11 234
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 632 YDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
+..++..+...|++++|...+.++.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555666666666666665554
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=7.1e-07 Score=73.35 Aligned_cols=107 Identities=11% Similarity=0.244 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCC----HHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGH--KPN----ACVYD 633 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 633 (721)
..+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...+++++.... +++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666777777777777777777777653 44556677777777777777777777777776421 111 66777
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 634 SLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 634 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
.++.++...|++++|...++++++ ..|+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 777778888888888888887777 4455444433
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-06 Score=72.70 Aligned_cols=114 Identities=14% Similarity=0.060 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 004976 523 TLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPD----VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYS 598 (721)
Q Consensus 523 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 598 (721)
+...+..++..+...|++++|+..|+++++.. |+ ...+..++.++...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45567777778888888888888888888744 54 4677778888888888888888888888753 44567788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 599 TLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
.++.++...|++++|...|++++... +.+...+..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHh
Confidence 88888888888888888888888763 555666665555443
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=5.1e-08 Score=99.82 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HhhHHHHHHH
Q 004976 47 QYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPS---------------FLSLSGLIEV 111 (721)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~ 111 (721)
++++|+..|+.++...+. ....|..++..+.+.|++++|+..|++++... +.+ ..++..++.+
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655543322 56788889999999999999999999999864 333 3566777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004976 112 FVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEA 191 (721)
Q Consensus 112 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 191 (721)
+.+.|++++|+..++.+++.++ .+..++..++.+|...|++++|+..|+++++.. +.+..++..+..++.+.++++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776643 366677777777777777777777777777663 33455666666666666666655
Q ss_pred H
Q 004976 192 L 192 (721)
Q Consensus 192 ~ 192 (721)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.56 E-value=2.3e-07 Score=76.84 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------------hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPD-------------ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS---- 623 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 623 (721)
.+...+..+...|++++|+..|+++++. .|+ ...|..++.++...|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3444555566666666666666666663 233 237888888888888888888888888875
Q ss_pred ---CCCCCHHHH----HHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 624 ---GHKPNACVY----DSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 624 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+ |.+...| ...+.++...|++++|+..|+++++
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 4556788 8899999999999999999999987
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=1.4e-07 Score=75.91 Aligned_cols=91 Identities=19% Similarity=0.120 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 004976 572 AGDLQSARELYNNMLQMG--LPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
.|++++|+..|+++++.+ -+.+...+..++.++...|++++|++.++++++.. |.+...+..++.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777642 12234566777777777777777777777777763 556677777777777777777777
Q ss_pred HHHHHHHHcCCCCCHH
Q 004976 650 DLIHEMADKGVHLDQE 665 (721)
Q Consensus 650 ~~~~~~~~~~~~p~~~ 665 (721)
..++++++ ..|++.
T Consensus 82 ~~~~~al~--~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIA--ETSDDE 95 (117)
T ss_dssp HHHHHHHH--HHCCCH
T ss_pred HHHHHHHH--hCCCcH
Confidence 77777776 344433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=9.1e-07 Score=72.68 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cC----HHhH
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFV--VN----IYAF 140 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 140 (721)
...+..++..+...|++++|+..|++++... |.+...+..++.++...|++++|...++.+++..+. ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888888888888888888888765 566677778888888888888888888877765321 11 5667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 141 NLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG 181 (721)
Q Consensus 141 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (721)
..++..+...|++++|...|+++.+. .|+...+..+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 77777777788888888888777775 3455554444433
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=1.2e-06 Score=69.59 Aligned_cols=99 Identities=8% Similarity=-0.095 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHhHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVV--NIYAFNLI 143 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l 143 (721)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|...++++++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455566666666666666666666666653 4455556666666666666666666666666543 22 45555666
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhC
Q 004976 144 LKGFCRK-GEVNKAIELFGEIKSN 166 (721)
Q Consensus 144 ~~~~~~~-g~~~~A~~~~~~~~~~ 166 (721)
+..+... |++++|++.++++.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=4.9e-06 Score=68.08 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHhHHHH
Q 004976 70 CNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSF---LSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN---IYAFNLI 143 (721)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 143 (721)
+..++..+...|++++|+..|++++... |.+. ..+..++.++...|++++|...++.+++..+. + +.++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4456666777777777777777777654 3333 46666777777777777777777777665433 3 5556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004976 144 LKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 144 ~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
+.++...|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777665
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=6.4e-06 Score=86.10 Aligned_cols=181 Identities=7% Similarity=-0.041 Sum_probs=132.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhH
Q 004976 36 QLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKN----------YEYAFSVYSKMTCVHIFPSFLSL 105 (721)
Q Consensus 36 ~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~ 105 (721)
.++++... +..-++|++.++.++..+|. ...+|+.-..++.+.|+ +++++.++++++..+ |.+..+|
T Consensus 34 ~~~~~~~~-~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW 110 (567)
T 1dce_A 34 AVFQKRQA-GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (567)
T ss_dssp HHHHHHHT-TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34444443 23447889999999988876 78888888888888877 889999999998876 7788888
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004976 106 SGLIEVFVQTQ--KPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKG-EVNKAIELFGEIKSNGVSPDNCSYNTIVNGL 182 (721)
Q Consensus 106 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (721)
.....++.+.+ +++++++.++++++.++ .+..+|+.-...+.+.| .++++++.++++++.+ +.|..+|+....++
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll 188 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHH
Confidence 88888888888 56888888888888764 47788888777777888 7888888888888775 55777888777766
Q ss_pred Hhc--------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004976 183 CKA--------------KRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGR 222 (721)
Q Consensus 183 ~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 222 (721)
.+. +.++++++++.+..... +-|..+|..+...+.+.++
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 653 34566666666665543 3345566665555555554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=8.5e-07 Score=76.21 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----hh
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCE-PD----VVSFNTMINGTLKAGDLQSARELYNNMLQMGL-PPD----AL 595 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 595 (721)
++..++..+...|++++|+..+++++..... ++ ..++..++..+...|++++|...++++.+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666667777777776666542100 11 13566677777778888888887777665310 011 34
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 596 TYSTLIHRFLRFGLLSDAKSVYQKMVAS----GHK-PNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+..++.++...|++++|.+.++++++. +.+ .....+..++.++...|++++|.+.++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5677788888888888888888887753 111 1234677788888888999999888888775
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=1.2e-06 Score=75.25 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCV--------H---------IFPSFLSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
....+...+..+.+.|++++|+..|++++.. . .+....++..++.++.+.|++++|+..++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4566788899999999999999999999875 1 0222345666677777777777777777777
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 129 LKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
++.+ +.++.++..++.+|...|++++|+..|+++++.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6664 335666677777777777777777777776665
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=4.6e-07 Score=72.84 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004976 45 NSQYAEAVSLFQRAICSD--RLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFAL 122 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 122 (721)
.|++++|+..|++++..+ .+.+..++..++.++...|++++|+..|+++++.+ |.+..++..++.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467888888888888873 12366788888888888888888888888888875 667778888888888888888888
Q ss_pred HHHHHHHHCCC
Q 004976 123 GVIGLILKRGF 133 (721)
Q Consensus 123 ~~~~~~~~~~~ 133 (721)
..++.+++..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888876643
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=1.3e-07 Score=97.17 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=57.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 004976 533 SLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSD 612 (721)
Q Consensus 533 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 612 (721)
.+.+.|++++|++.|+++++.. +.+...+..++.+|.+.|++++|++.++++++.. +.+...+..++.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555533 1234455555555555555555555555555532 2334455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChhHHHHHHH
Q 004976 613 AKSVYQKMVASGHKPNACVYDSLLKG--FSSQGETEEVFDLIH 653 (721)
Q Consensus 613 A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 653 (721)
|++.++++++.. +.+...+..++.+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555542 2233344444444 555555555555555
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=6.1e-07 Score=87.70 Aligned_cols=148 Identities=8% Similarity=-0.046 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 489 SVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMING 568 (721)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (721)
...+..++..+.+.|++++|...|++++.. .|+.. .+...++++++...+ ....|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344555555566666666666666666554 22211 111222333322211 01256667777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCChhH
Q 004976 569 TLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG-FSSQGETEE 647 (721)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 647 (721)
|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++.. +.+...+..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777643 3455677777777777777777777777776653 3445555555555 333456666
Q ss_pred HHHHHHHHHH
Q 004976 648 VFDLIHEMAD 657 (721)
Q Consensus 648 A~~~~~~~~~ 657 (721)
+...|++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777765
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=2.5e-06 Score=87.24 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKG 638 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 638 (721)
...|..++.+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++.. +.+...+..++.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3566677777777777777777777777753 4455677777777777777777777777777753 4455667777777
Q ss_pred HHcCCChhHHHH-HHHHHH
Q 004976 639 FSSQGETEEVFD-LIHEMA 656 (721)
Q Consensus 639 ~~~~g~~~~A~~-~~~~~~ 656 (721)
+...|++++|.+ .+++|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766653 334443
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2e-05 Score=80.54 Aligned_cols=200 Identities=10% Similarity=-0.031 Sum_probs=99.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCCCh--------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC
Q 004976 388 LLMGIGKFGKVDEALELFNLVLKEEKYVQLDV--------------VTYNNLIQGLCKEDRLDEAVKIYHTMAERGI-SG 452 (721)
Q Consensus 388 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 452 (721)
-+..+...|++++|++.|..+++..+...... ..+..++..|...|++++|.+.+..+..... .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34556677777778777777776543321100 1245566666666666666666665543210 11
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 004976 453 NL----VTFNILIGKYLTAGIIDKALEMWKHLLEL----GHVP-NSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN--- 520 (721)
Q Consensus 453 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 520 (721)
+. .+...+...+...|+++.|..+++..... +..+ -...+..++..+...|++++|..+++++...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 11122223333455666666666555432 1111 133455555666666666666666655543210
Q ss_pred -CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-C--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 521 -DPT-LFDYNALMASLCKESSLEQAKRLFIEIRNA---NCEP-D--VVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 521 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
.+. ..++..++..|...|++++|..+++++... ...| . ...+..++..+...|++++|...|.++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 234555556666666666666666555431 1111 1 12344444555555666666666655554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=1.9e-06 Score=85.05 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 594 ALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 594 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
...|..++.+|.+.|++++|++.++++++.. +.+...|..++.+|...|++++|+..++++++ +.|+.......+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4566777777777777777777777777753 55677777777777777777777777777777 56655444444444
Q ss_pred HHh
Q 004976 674 LCN 676 (721)
Q Consensus 674 ~~~ 676 (721)
+..
T Consensus 350 ~~~ 352 (370)
T 1ihg_A 350 VKQ 352 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=3.5e-06 Score=69.70 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------CHh-----hHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 004976 67 GSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFP------SFL-----SLSGLIEVFVQTQKPKFALGVIGLILKR---- 131 (721)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 131 (721)
...+...+..+...|++++|+..|+++++..... +.. .|..++.++...|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556778888999999999999999998875221 121 5666666666666666666666666654
Q ss_pred ---CCCcCHHhH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 132 ---GFVVNIYAF----NLILKGFCRKGEVNKAIELFGEIKS 165 (721)
Q Consensus 132 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 165 (721)
++. +..+| ...+.++...|++++|+..|++.++
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 322 34445 5555555555555555555555544
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=1.4e-05 Score=83.55 Aligned_cols=173 Identities=6% Similarity=0.010 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-
Q 004976 470 IDKALEMWKHLLELGHVPNSVTYSSMIDGFCKIGM----------LNIAKGIFSKMRVSGNDPTLFDYNALMASLCKES- 538 (721)
Q Consensus 470 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 538 (721)
.++|++.++.++..++. +...|+.-..++...|+ ++++++.++++.+..++ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566666666666544 55556555555555554 56666666666655322 4555555555555666
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---------
Q 004976 539 -SLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAG-DLQSARELYNNMLQMGLPPDALTYSTLIHRFLRF--------- 607 (721)
Q Consensus 539 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 607 (721)
+++++++.++++++.+ +.+..+|+.-..+....| .+++++++++++++.. +.|...|+..+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 4566666666666654 224556666666666666 5666666666666643 34455565555555442
Q ss_pred -----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhH
Q 004976 608 -----GLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEE 647 (721)
Q Consensus 608 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 647 (721)
+.++++++.+.+++... |.+...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 34566667776666653 5566666666666666665443
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=1e-06 Score=90.51 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
..|++++|++.|++++..++. +..+|..++.++.+.|++++|+..|+++++.+ |.+..++..++.++...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 457888888888888877654 67788888888888888888888888888775 5666777777778888888888888
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 004976 124 VIGLILKRGFVVNIYAFNLILKG--FCRKGEVNKAIELFG 161 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 161 (721)
.++++++..+. +..++..+..+ +.+.|++++|+..++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88877766433 44445555444 667777777777776
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=3e-06 Score=83.68 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+...|..++.+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|++.|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34578888888999999999999999999854 4456788889999999999999999999998874 567788888888
Q ss_pred HHHcCCChhHHHHH
Q 004976 638 GFSSQGETEEVFDL 651 (721)
Q Consensus 638 ~~~~~g~~~~A~~~ 651 (721)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877776543
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.32 E-value=7.9e-07 Score=73.38 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004976 573 GDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL----------LSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ 642 (721)
Q Consensus 573 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (721)
+.+++|++.+++.++.. |.+...|..++.++...|+ +++|+..|+++++.+ |.+..+|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34556666666666543 3445556556666655554 347788888877764 55677777788887766
Q ss_pred C-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 643 G-----------ETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 643 g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
| ++++|+..|+++++ +.|+...+...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4 78888888888888 78887777666654
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=3.5e-06 Score=72.22 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 004976 491 TYSSMIDGFCKIGMLNIAKGIFSKMRVSGND-PT----LFDYNALMASLCKESSLEQAKRLFIEIRNANC-EPD----VV 560 (721)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~ 560 (721)
.+..++..+...|++++|...++++.+.... ++ ..++..++..+...|++++|...++++..... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666666555432110 01 13556667777777777777777777655210 011 23
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQM----GLPP-DALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
.+..++..+...|++++|...++++.+. +.++ ...++..++.++...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667778888888888888888887653 1111 1345677888888899999999998888753
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.6e-06 Score=84.81 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFL 605 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (721)
.+..++..+.+.|++++|+..|++++... |+... +...|+.+++...+. ...|..++.+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34455555556666666666666665532 33221 122233333322221 137889999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCchhhHh
Q 004976 606 RFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCL-CNISEDLDVA 684 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~~~ 684 (721)
+.|++++|+..++++++.. +.+...|..++.+|...|++++|...|+++++ +.|++......+..+ ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 66889999999999999999999999999987 778776666555554 2223333333
Q ss_pred h-HHHHHHh
Q 004976 685 K-LFPTFSQ 692 (721)
Q Consensus 685 ~-~~~~~~~ 692 (721)
. .+.+++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 3 3444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=2.4e-05 Score=64.62 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHH
Q 004976 539 SLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLR----FGLLSDAK 614 (721)
Q Consensus 539 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 614 (721)
++++|+++|++..+.+ .++.. ++..|...+.+++|.++|+++.+.| +......++.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 5555555556666666666666643 44555566666665 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHcC
Q 004976 615 SVYQKMVASGHKPNACVYDSLLKGFSS----QGETEEVFDLIHEMADKG 659 (721)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 659 (721)
+.|+++.+.| ++..+..++..|.. .++.++|..+++++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666643 45556666666666 566666666666666643
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=9e-06 Score=64.88 Aligned_cols=81 Identities=6% Similarity=-0.093 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 50 EAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLIL 129 (721)
Q Consensus 50 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 129 (721)
+|+..|++++..+|. +...+..++.++...|++++|+..|++++..+ |.+...+..++.++...|++++|...|+.++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678899999988765 78899999999999999999999999999876 6677888999999999999999999999887
Q ss_pred HCC
Q 004976 130 KRG 132 (721)
Q Consensus 130 ~~~ 132 (721)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.7e-06 Score=68.63 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------HHHH
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN------ACVY 632 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 632 (721)
...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 4455566666666666666666666666643 3345566666666667777777777777766642 223 4555
Q ss_pred HHHHHHHHcCCChhHHHHHHH
Q 004976 633 DSLLKGFSSQGETEEVFDLIH 653 (721)
Q Consensus 633 ~~l~~~~~~~g~~~~A~~~~~ 653 (721)
..++.++...|++++|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 566666666666555554443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=6.8e-05 Score=61.84 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 004976 503 GMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLK----AGDLQSA 578 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 578 (721)
+++++|+..|++..+.+ .+... ++..|...+.+++|+++|+++.+.+ +...+..++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777765 22222 6666777777777888888887754 56677777777776 7788888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 004976 579 RELYNNMLQMGLPPDALTYSTLIHRFLR----FGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 624 (721)
.++|+++.+.| +......|+.+|.. .+++++|.+.|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888754 56667777877777 778888888888888765
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=2.6e-05 Score=79.33 Aligned_cols=123 Identities=10% Similarity=-0.047 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCC-hhhHHH
Q 004976 534 LCKESSLEQAKRLFIEIRNA-----N-CEPDV-VSFNTMINGTLKAGDLQSARELYNNMLQM-----G-LPPD-ALTYST 599 (721)
Q Consensus 534 ~~~~~~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~ 599 (721)
+..+|++++|+.++++++.. | -.|+. .+++.|+.+|...|++++|+.++++++.. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766652 1 11222 36677777777888888887777776643 2 1222 246777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC-----CCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 600 LIHRFLRFGLLSDAKSVYQKMVAS-----GHKPN---ACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
|+..|...|++++|+.+++++++. | +.+ ..+...+..++...|.+++|..+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877642 3 222 33455666777778888888888888765
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.06 E-value=1.4e-05 Score=66.01 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYE----------YAFSVYSKMTCVHIFPSFLSLSGLIEVFVQT 115 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (721)
+.|++|++.|++++..+|. +.+.|+.++.++...++++ +|+..|+++++.+ |....+|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 4678999999999988766 8889988888888887764 7777777777765 55666777777777666
Q ss_pred C
Q 004976 116 Q 116 (721)
Q Consensus 116 ~ 116 (721)
|
T Consensus 94 g 94 (158)
T 1zu2_A 94 A 94 (158)
T ss_dssp H
T ss_pred c
Confidence 4
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=3.4e-06 Score=66.85 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHh
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVN------IYA 139 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 139 (721)
+...+..++..+...|++++|+..|++++... |.+...+..++.++...|++++|...++.+++..+. + ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 45667778888888888888888888888775 566777778888888888888888888888776533 3 445
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004976 140 FNLILKGFCRKGEVNKAIELFG 161 (721)
Q Consensus 140 ~~~l~~~~~~~g~~~~A~~~~~ 161 (721)
+..+..++...|+++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5556666666666555554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=2.7e-05 Score=62.06 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 004976 577 SARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMA 656 (721)
Q Consensus 577 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 656 (721)
+|+..|+++++.. +.+...+..++.++...|++++|+..|++++... +.+...|..++.++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777643 4456677777777777777777777777777763 5566777777777777777777777777776
Q ss_pred H
Q 004976 657 D 657 (721)
Q Consensus 657 ~ 657 (721)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=3.9e-05 Score=57.82 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILK 145 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 145 (721)
+...+..++..+...|++++|+..|++++... |.+...+..++.++...|++++|...++++++.++ .+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45667777777888888888888888887764 55666777777777777777777777777776643 35556666655
Q ss_pred HHHhc
Q 004976 146 GFCRK 150 (721)
Q Consensus 146 ~~~~~ 150 (721)
.+...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=4e-05 Score=57.79 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004976 561 SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFS 640 (721)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (721)
.+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|+..++++++.. +.+...+..++.++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444444455555555555444432 2233444444444555555555555555544432 333444444444433
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=2.7e-05 Score=79.22 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHhCC-----CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHhhHHHHH
Q 004976 44 PNSQYAEAVSLFQRAICSD-----RL--PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV-----H--IFPSFLSLSGLI 109 (721)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~ 109 (721)
.+|+|++|..++++++... +. ....+++.++.+|..+|+|++|+.++++++.. | .|....++..++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5678888888888887532 11 13457778888888888888888888887754 1 111223456666
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----CCCC--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004976 110 EVFVQTQKPKFALGVIGLILK-----RGFV--VNIYAFNLILKGFCRKGEVNKAIELFGEIKS 165 (721)
Q Consensus 110 ~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 165 (721)
..|..+|++++|..+++++++ .|+. ....+...+..++...+.+++|+.++.++.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777666666652 2222 1122334445555555666666666665544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=7e-05 Score=57.69 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 560 VSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
..+..++.++...|++++|+..|+++++.. +.+...|..++.+|...|++++|++.|++++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444432 2223344444444444444444444444444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=8.9e-05 Score=57.07 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.+...+..++.++...|++++|++.|+++++.+ +.+...|..++.+|...|++++|...++++++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999875 66788999999999999999999999999986
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.00021 Score=58.26 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChhHHH
Q 004976 575 LQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG---LLSDAKSVYQKMVASGHKP--NACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 575 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
...+.+.|.+....+ +++..+...+++++++.+ +.++++.++++..+.+ .| +...+..++.++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 456677777777766 578888889999999988 6779999999998864 24 4678888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 004976 650 DLIHEMADKGVHLDQELTSTILVCL 674 (721)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~ll~~~ 674 (721)
++++.+++ +.|++.....+...+
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHH
Confidence 99999999 889887777776653
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.001 Score=63.46 Aligned_cols=75 Identities=12% Similarity=-0.010 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTST 669 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 669 (721)
+.+..++..++..+...|++++|...+++++..+ |+...|..++.++.-.|++++|.+.++++.. +.|...++..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 5667788888877888899999999999999974 7888888889999999999999999999998 8898876543
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.48 E-value=7e-08 Score=92.72 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=119.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004976 101 SFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVN 180 (721)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 180 (721)
.+..|..++++....++..+|++.|-++ .|+..|..++....+.|.+++-++.+.-+.+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3445666666666666666665554332 24445566666666666666666666555544 234444456666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhH
Q 004976 181 GLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDK 260 (721)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 260 (721)
+|++.++..+..+++ . .||..-...++.-|...|.++.|.-+|..+ .-|..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHH
Confidence 677666655443332 1 255555566666666666666655444322 223444455556666666
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004976 261 GKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMMERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVK 340 (721)
Q Consensus 261 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 340 (721)
|.+.-++ ..++.+|..+..+|...+++.-|.-.--.++-. +| -...++..|...|.+++-+.+++..+.
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5543222 125556666666666666666554443333321 11 122344445566666666666666553
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 004976 341 KGEKLSVITYNVLIKGLCQK 360 (721)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~ 360 (721)
. ......+|..|+-.|++-
T Consensus 258 l-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS
T ss_pred C-CchhHHHHHHHHHHHHhc
Confidence 2 233555666666555543
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.46 E-value=0.00069 Score=50.77 Aligned_cols=70 Identities=7% Similarity=-0.023 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 591 PPDALTYSTLIHRFLRFGL---LSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
+++...+..++.++...++ .++|..+++++++.+ +.+...+..++..+.+.|++++|+..|+++++ ..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 4556666666666654444 577777777777764 55667777777777777777777777777776 4444
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00012 Score=56.25 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 569 TLKAGDLQSARELYNNMLQMGLPPDAL-TYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
+...|++++|+..++++++.. +.+.. .+..++.++...|++++|++.|+++++
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333344444444444443321 12223 334444444444444444444444443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0025 Score=60.76 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVY 632 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (721)
+..++..++..+...|++++|+..+++++.. .|+...|..++..+...|++++|.+.|+++... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3344444444444445555555555555553 244444455555555555555555555555553 3444443
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.36 E-value=0.023 Score=51.78 Aligned_cols=85 Identities=7% Similarity=0.084 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CCh
Q 004976 575 LQSARELYNNMLQMGLPPD---ALTYSTLIHRFLRF-----GLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQ-GET 645 (721)
Q Consensus 575 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 645 (721)
...|...++++++ +.|+ ...|..++..|... |+.++|.+.|+++++.+..-+...+..++..++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 5778888888888 5676 45788888888884 99999999999999874212478888888888874 999
Q ss_pred hHHHHHHHHHHHcCCC
Q 004976 646 EEVFDLIHEMADKGVH 661 (721)
Q Consensus 646 ~~A~~~~~~~~~~~~~ 661 (721)
++|.+.+++++.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999984444
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00072 Score=67.51 Aligned_cols=86 Identities=8% Similarity=-0.081 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CC--CCCHHHHHHHHH
Q 004976 572 AGDLQSARELYNNMLQM---GLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS-----GH--KPNACVYDSLLK 637 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~ 637 (721)
.|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. |. +....+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665542 11122 245666777777777777777777776642 21 112345667777
Q ss_pred HHHcCCChhHHHHHHHHHHH
Q 004976 638 GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~~ 657 (721)
+|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777653
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.00057 Score=52.27 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 73 LMEALVRSKNYEYAFSVYSKMTCVHIFPSFL-SLSGLIEVFVQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 132 (721)
.+..+.+.|++++|+..|++++..+ |.+.. .+..++.++...|++++|...|+.+++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4555666666666666666666654 44455 56666666666666666666666666554
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.28 E-value=0.015 Score=52.98 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CChh
Q 004976 154 NKAIELFGEIKSNGVSPD---NCSYNTIVNGLCK-----AKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKD-GRVD 224 (721)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~ 224 (721)
..|...++++++. .|+ ...|..++..|.. -|+.++|.+.|++.+..+-.-+..++...+..++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444455555544 233 3345555555554 255555555555555543101234444444544442 5555
Q ss_pred HHHHHHHHHhHCC
Q 004976 225 EAMGLLEEMKAKG 237 (721)
Q Consensus 225 ~A~~~~~~~~~~~ 237 (721)
.+.+.+++++...
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 5555555555543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.26 E-value=1.9e-07 Score=89.77 Aligned_cols=266 Identities=13% Similarity=0.117 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004976 65 PSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLIL 144 (721)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 144 (721)
..+++|..++.++.+.+...+|+.-|=++ .|+..+..++....+.|.+++-..++..+.+. ..++.+=+.++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 46678999999999999999998776443 45667888999999999999999999998654 34556667899
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 004976 145 KGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVD 224 (721)
Q Consensus 145 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 224 (721)
-+|++.++..+-.+.+. .||..-...++.-|...|.++.|.-+|..+.. |..|...+++.|++.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 99999999766544332 47777778889999999999999888754432 455666778888888
Q ss_pred HHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 225 EAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDDMLEKGISPNVVTYNSLMHCLCKIGQWKEAIAMLDAMM 304 (721)
Q Consensus 225 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 304 (721)
.|.+.-+ +. -++.+|..+-.+|...+++.-|...--.++-. ++ -...++..|-..|-+++-+.+++...
T Consensus 188 ~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7765432 22 27788999999999999988887766665532 22 23346667888899999999998877
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHhHHH
Q 004976 305 ERGIRPDVVTYTCLIEGLCKGGRATKAIDLLNWMVKK-GEKL------SVITYNVLIKGLCQKGLVGEAY 367 (721)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 367 (721)
.. -......++.|+-.|++- ++++-.+.++..-.+ ++|. ....|..+.-.|.+-.+++.|.
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 123466677777777765 344433333322211 2221 2345666777777777776554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.0029 Score=63.32 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=75.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCC---HHH
Q 004976 567 NGTLKAGDLQSARELYNNMLQM---GLPPD----ALTYSTLIHRFLRFGLLSDAKSVYQKMVAS-----GHKPN---ACV 631 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~ 631 (721)
.-+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | +.+ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHH
Confidence 3355678888888888888764 12232 256788888888899999999988887752 3 222 346
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHH
Q 004976 632 YDSLLKGFSSQGETEEVFDLIHEMAD---KGVHLDQELTSTILVCL 674 (721)
Q Consensus 632 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~ll~~~ 674 (721)
++.++.+|...|++++|..+++++++ .-+-|++.....+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 88888889999999999999988764 23456666555555444
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.0014 Score=65.52 Aligned_cols=87 Identities=9% Similarity=0.047 Sum_probs=61.5
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCC---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCCh-hhHHHHH
Q 004976 536 KESSLEQAKRLFIEIRNA---NCEPD---V-VSFNTMINGTLKAGDLQSARELYNNMLQM-----G-LPPDA-LTYSTLI 601 (721)
Q Consensus 536 ~~~~~~~A~~~~~~~~~~---~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~ 601 (721)
..|++++|+.++++.+.. -+.|+ . .+++.|+.+|...|++++|+.++++++.. | -.|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778888877776651 11222 2 36777888888888888888888887653 2 12332 5678888
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 004976 602 HRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~ 622 (721)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888999999999988888875
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0025 Score=47.68 Aligned_cols=66 Identities=9% Similarity=-0.043 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 66 SGSVCNSLMEALVRSKN---YEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 132 (721)
+.+++..++.++...++ .++|..++++++..+ |.+..++..++..+.+.|++++|+..|+.+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555543333 455555555555554 4455555555555555555555555555555443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.04 E-value=0.0044 Score=47.68 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 004976 596 TYSTLIHRFLRFGLLSDAKSVYQKMVASG------HKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELT 667 (721)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 667 (721)
-...++..+...|++..|...|+.++... -.+...++..++.++.+.|++++|..+++++++ +.|++...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHH
Confidence 33456666666777777777766666530 123456777777777777777777777777777 66665444
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.95 E-value=0.0051 Score=48.04 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChhHHH
Q 004976 575 LQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSD---AKSVYQKMVASGHKP--NACVYDSLLKGFSSQGETEEVF 649 (721)
Q Consensus 575 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 649 (721)
...+.+.|.+....| .++..+-..+++++.+..+... ++.+++.....+ .| .-.....++-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445556666665555 4777777788888888777665 888888877653 23 4456777888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 650 DLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
++++.+++ ..|++.....|-..
T Consensus 95 ~~~~~lL~--~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHH
Confidence 99999988 78877666665544
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0047 Score=61.82 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCC-hhhHH
Q 004976 533 SLCKESSLEQAKRLFIEIRNA---NCEPDV----VSFNTMINGTLKAGDLQSARELYNNMLQM-----G-LPPD-ALTYS 598 (721)
Q Consensus 533 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 598 (721)
.+..+|++++|+.++++++.. -..|+. .+++.++.+|...|++++|+.++++++.. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345677888888888877752 122322 36777888888888888888888877653 2 1222 25678
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 599 TLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
.|+..|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 889999999999999999988875
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.0079 Score=48.98 Aligned_cols=87 Identities=15% Similarity=-0.039 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHH
Q 004976 46 SQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSK---NYEYAFSVYSKMTCVHIF-PSFLSLSGLIEVFVQTQKPKFA 121 (721)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 121 (721)
.....+.+.|++....++ ++.++...++.++.+.+ +.++++.+++...+.+.| .....++.++..+.+.|+++.|
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 355667777777777655 47888888888888877 666888888888876522 2456777777788888888888
Q ss_pred HHHHHHHHHCCC
Q 004976 122 LGVIGLILKRGF 133 (721)
Q Consensus 122 ~~~~~~~~~~~~ 133 (721)
+++++.+++..|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 888888887654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.73 E-value=0.0087 Score=46.01 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVH------IFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG 132 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 132 (721)
+..-+..++..+.+.|+|..|+..|+.+++.. ......++..++.++.+.|+++.|...++.+++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56677888999999999999999999888652 12233455666666666666666666666666554
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.61 E-value=0.049 Score=43.56 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHh-hHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 004976 64 LPSGSVCNSLMEALVRSKNY------EYAFSVYSKMTCVHIFPSFL-SLSGLIE------VFVQTQKPKFALGVIGLILK 130 (721)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 130 (721)
+.+.++|-..+..+-+.|+. ++.+.+|+++... +||+.. .|...+. .+...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34888998888888888998 8999999999886 456432 1111111 12345788888888888876
Q ss_pred CCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004976 131 RGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNG 167 (721)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 167 (721)
. .+.-..+|...+..-.++|++..|++++.+.+..+
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 5 33336677777777788888888888888888765
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.46 E-value=1.4 Score=47.96 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=144.6
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CChhhHHHHHHH
Q 004976 391 GIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLIQGLCKEDRLDEAVKIYHTMAERGI--S-----GNLVTFNILIGK 463 (721)
Q Consensus 391 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 463 (721)
+....|+.++++.++...+.......+....-..++-+....|..+++..++.......- . +....-..++-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888888777665531101111122222333344455555667777766554310 0 111112223333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004976 464 YLTAGI-IDKALEMWKHLLELGHVPNS--VTYSSMIDGFCKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSL 540 (721)
Q Consensus 464 ~~~~~~-~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 540 (721)
....|. -+++.+.+..++.... +.. ..-..++..+.-.|+.+....++..+.+.. ..+..-...++-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 2456666666665321 111 122234444556677777777777766532 11222233344445567888
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 004976 541 EQAKRLFIEIRNANCEPDVV--SFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQ 618 (721)
Q Consensus 541 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (721)
+.+..+.+.+.... .|... ....++-+|+..|+......++..+.... ..+..-...++-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888777631 22222 22345567788899877777888888742 3333333444445556777766677776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 619 KMVASGHKPNACVYDSLLKGFSSQGE-TEEVFDLIHEMADKGVHLDQELTSTILVCLCN 676 (721)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 676 (721)
.+...+ .|....-..++-+....|. ..+|+..+..+. -.+|..+....+.++..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~---~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT---KDPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---TCSSHHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 555532 3333222222223333343 367888888887 35666666555555443
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.14 E-value=2 Score=46.69 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=144.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCC---h--h--hHHHH
Q 004976 355 KGLCQKGLVGEAYEILNMMIEKGMMPDVVSY--NTLLMGIGKFGKVDEALELFNLVLKEEKYVQLD---V--V--TYNNL 425 (721)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~--~--~~~~l 425 (721)
-+....|+.++++.++...+..+...+..+. ..++-+....|..+++..++...+........+ . . ....+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888888888776542111233322 223334455566567888887776532211011 1 1 12223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHh
Q 004976 426 IQGLCKEDRLDEAVKIYHTMAERGISGNLV--TFNILIGKYLTAGIIDKALEMWKHLLELGHVPNSVTYS--SMIDGFCK 501 (721)
Q Consensus 426 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 501 (721)
+.+|...++ +++.+.+..+.... .+... .-..++..+.-.|+.+....++..+.+.. +..... .+.-++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333333343 45666666666532 11111 12234444556788877777877776642 333333 33344557
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004976 502 IGMLNIAKGIFSKMRVSGNDPTLFD--YNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAR 579 (721)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 579 (721)
.|+.+.+..+.+.+.... .|.... -..++-+|+..|+.....++++.+.... ..++.....++-+....|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 899998888888887641 222221 1234456778899888888998888632 223333334444556677777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-hHHHHHHHHHHH
Q 004976 580 ELYNNMLQMGLPPDALTYSTLIHRFLRFGLL-SDAKSVYQKMVA 622 (721)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 622 (721)
.+++.+.+.+ .|....-..++-+....|+. .+++..+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666643 44444333444444445543 678889988875
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.08 E-value=0.19 Score=39.91 Aligned_cols=82 Identities=5% Similarity=-0.021 Sum_probs=64.0
Q ss_pred CCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGL---LSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELT 667 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 667 (721)
.|+..+-..+++++.+..+ ..+++.+++.....+....-..+..++-++.+.|++++|.++.+.+++ ..|++...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 5777788888888888776 446888888888754223456777888899999999999999999999 88988777
Q ss_pred HHHHHHH
Q 004976 668 STILVCL 674 (721)
Q Consensus 668 ~~ll~~~ 674 (721)
..|-...
T Consensus 114 ~~Lk~~I 120 (144)
T 1y8m_A 114 GALKSMV 120 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.58 Score=39.16 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=44.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 004976 78 VRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAI 157 (721)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 157 (721)
...|+++.|.++.+.. .+...|..++......|+++-|...|.+.. . +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D-----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----S-----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C-----HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C-----HHHHHHHHHHhCCHHHHH
Confidence 3444455544444332 234445555555555555555555554441 0 223333344445554444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004976 158 ELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILP 196 (721)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 196 (721)
++-+.....| -++.-..++.-.|+++++.++|.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444332 22333334445555655555553
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.63 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 004976 208 ITYSTLMDGLCKDGRVDEAMGLLEE 232 (721)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (721)
..|..++......|+++-|.+.|.+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444444444444444444433
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.88 E-value=0.099 Score=40.95 Aligned_cols=82 Identities=5% Similarity=-0.003 Sum_probs=62.8
Q ss_pred CCChhhHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 004976 591 PPDALTYSTLIHRFLRFGLL---SDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELT 667 (721)
Q Consensus 591 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 667 (721)
.|...+-..+++++.+..+. .+++.+++.....+....-..+..++.++.+.|++++|.++.+.+++ ..|++...
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 56777777888888887754 46888888888754223466778888889999999999999999998 88888777
Q ss_pred HHHHHHH
Q 004976 668 STILVCL 674 (721)
Q Consensus 668 ~~ll~~~ 674 (721)
..|-...
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666553
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.87 E-value=0.47 Score=37.10 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 004976 559 VVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASG 624 (721)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (721)
...+...+......|+.+.-.+++..++.. .+|++.....++.+|.+.|+..+|.+++.++.+.|
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444445555555555555555554332 34555555555555555555555555555555554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.81 E-value=0.5 Score=36.95 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=92.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004976 500 CKIGMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSAR 579 (721)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 579 (721)
.-.|..++..++..+...+. +..-+|.++--....-+-+-..++++.+-+. -| ....|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34566777777776666542 3333444433333333444444444433321 01 12456666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 004976 580 ELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKG 659 (721)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 659 (721)
..+-.+ ..+...+..-+..+...|+-++-.+++..++.. .+|+++.+..++.+|.+.|+..+|.++++++.+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 665443 245566667778888999999999999997654 48899999999999999999999999999999988
Q ss_pred CC
Q 004976 660 VH 661 (721)
Q Consensus 660 ~~ 661 (721)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.77 E-value=0.11 Score=41.69 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004976 503 GMLNIAKGIFSKMRVSGNDPTLFDYNALMASLCKESSLEQAKRLFIEIRNAN 554 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 554 (721)
++.++|.++|+.++..+..- ..+|...++.-.++|+...|++++.+++..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56666666666665542221 4445555555556666666666666666654
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.28 Score=54.24 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=14.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 206 NLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
+...|..++..+.+.++++.|.+.|..+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344555555555555555555555444
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.66 E-value=0.24 Score=54.77 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=88.7
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChh
Q 004976 76 ALVRSKNYEYAFS-VYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVN 154 (721)
Q Consensus 76 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 154 (721)
.....+++++|.+ ++..+ + +......++..+...|..+.|.++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345678887766 43111 1 122236677777788888877765421 11 1123345678888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004976 155 KAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEMK 234 (721)
Q Consensus 155 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 234 (721)
.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888775432 3667888888888888888888888887643 3344445555666665554444444
Q ss_pred HCCCCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 004976 235 AKGLDADVVVYSALISGFCSNGSFDKGKKLFDD 267 (721)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (721)
..| -+.....+|.+.|++++|.++|.+
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 123333344455555555555443
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.42 E-value=0.083 Score=41.28 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004976 452 GNLVTFNILIGKYLTAGIIDK---ALEMWKHLLELG-HVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVS 518 (721)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (721)
++..+-..++.++.+...... ++.+++.+...+ +.........+.-++.+.|++++|.++++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444444444443332 444444444332 1012223333333444444444444444444443
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.88 E-value=4.4 Score=42.28 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 004976 503 GMLNIAKGIFSKMRVSGNDPTLFD----YNALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSA 578 (721)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 578 (721)
.+.+.|...+........ .+... ...++......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 367888888877765432 23222 2222223333442445556666554432 3333333344444566888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 579 RELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (721)
...|+.|.... .....-...++.++...|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888776532 12344456677788888888888888888864
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.66 E-value=0.14 Score=41.96 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=80.4
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC
Q 004976 32 DVETQLRLLFEKPNSQYAEAVSLFQRAICSDR-LPS-------GSVCNSLMEALVRSKNYEYAFSVYSKMTCVH--IFPS 101 (721)
Q Consensus 32 ~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 101 (721)
.+-..+..++. .+.|+.|.-+.+.++.... .++ ..++..++.+++..|+|..|...|++++... .+..
T Consensus 22 ~l~dqik~L~d--~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAA--AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678888887 6799999999998665431 111 1367788999999999999999999987541 1111
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004976 102 FLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNG 181 (721)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (721)
......+.......+ ......+.++-..+..+|...+++++|+.+++.+... ..+...-..|.+.
T Consensus 100 ~s~~~~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakL 164 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHH
T ss_pred CCccccccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHH
Confidence 111111100000000 0112234566777888889999999999988877544 2344444444443
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.63 E-value=3 Score=39.16 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhHhhHHHHHHhccC-CCCcccHHH
Q 004976 626 KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCNISEDLDVAKLFPTFSQETS-KGKSISCKD 704 (721)
Q Consensus 626 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 704 (721)
.-|+.....++..|.+.|++.+|...|- . |-.+....+..++..+....+..+..-.+.+.+.... -++...++.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~ 208 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANT 208 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3466666777777777777777766652 1 2233335555555555555554444444444444333 455555555
Q ss_pred HHHHHh
Q 004976 705 LLLKLQ 710 (721)
Q Consensus 705 ~~~~l~ 710 (721)
++..+.
T Consensus 209 ~~~~f~ 214 (336)
T 3lpz_A 209 AYRIFT 214 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.85 E-value=0.28 Score=40.26 Aligned_cols=120 Identities=9% Similarity=-0.001 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcCHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMTCVH-IFPSF-------LSLSGLIEVFVQTQKPKFALGVIGLILKRG--FVVNIY 138 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 138 (721)
.+..-+..+...|.|+.|+-+.+.++... ..++. .++..++.++...|++..|...|+++++.. ...+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555677788888888888887766542 11221 245677788888888888888888875321 111111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 139 AFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 139 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
....+. ....... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0111234455556888999999999999999887554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.36 Score=51.31 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004976 142 LILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDME 199 (721)
Q Consensus 142 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 199 (721)
.-+..+...|+++.|+++.++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33445555566666666666655542 3334456666666666666666665555543
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.68 E-value=1.3 Score=35.27 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 522 PTLFDYNALMASLCKESS---LEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 522 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
|+..+--.++.++.+..+ ..+++.+++.+.+.+..........++-++.+.|++++|..+.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444332 234455555555433111223344444455555555555555555555
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.46 E-value=5.9 Score=39.57 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCh--hhH
Q 004976 529 ALMASLCKESSLEQAKRLFIEIRNA--NCEPD---VVSFNTMINGTLKAGDLQSARELYNNMLQM----GLPPDA--LTY 597 (721)
Q Consensus 529 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~--~~~ 597 (721)
.|+..+...|++.+|..++..+... +..+. ...+...++.|...+++..|..++.++... ..+|+. ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4455555556666666665555431 11111 123444455555566666666655554321 111111 233
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMV 621 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~ 621 (721)
...+..+...++|.+|-+.|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555566666655555554
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.35 E-value=0.57 Score=36.72 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 562 FNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
+..++-++.+.|++++|..+.+.+++
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444444444
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.31 E-value=6.3 Score=38.26 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 004976 383 VSYNTLLMGIGKFGKVDEALELFNLVL 409 (721)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 409 (721)
.....++..|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666777777776666665543
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.79 E-value=6.2 Score=36.77 Aligned_cols=79 Identities=5% Similarity=-0.154 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--chhhHhh-HHHHHHhcc-CCCCcccH
Q 004976 627 PNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCNIS--EDLDVAK-LFPTFSQET-SKGKSISC 702 (721)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~~ 702 (721)
.++.....++..|.+.|++.+|...|-.. -.-+...+..++..+.... +.....+ .+.+.+... .-++...+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A 207 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFA 207 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHH
Confidence 46777777778888888887777765411 1112344444444444432 3322233 233333322 24555555
Q ss_pred HHHHHHH
Q 004976 703 KDLLLKL 709 (721)
Q Consensus 703 ~~~~~~l 709 (721)
+.++..+
T Consensus 208 ~~~~~~f 214 (312)
T 2wpv_A 208 HESKDIF 214 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.67 E-value=8.9 Score=38.27 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--hhh
Q 004976 458 NILIGKYLTAGIIDKALEMWKHLLEL--GHVPN---SVTYSSMIDGFCKIGMLNIAKGIFSKMRV----SGNDPT--LFD 526 (721)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~ 526 (721)
..++..|...|++.+|..++..+... +.... ...+...++.|...+++.+|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777776532 11111 23455566677777888888877777642 111222 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004976 527 YNALMASLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 527 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 552 (721)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556666777888888777776654
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.66 Score=49.32 Aligned_cols=51 Identities=18% Similarity=0.065 Sum_probs=26.3
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 604 FLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
|...|+++-|+++.++++.. .|.+..+|..|+.+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445555555555555544 1334555555555555555555555555544
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.13 E-value=13 Score=38.83 Aligned_cols=115 Identities=9% Similarity=-0.055 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 004976 292 QWKEAIAMLDAMMERGIRPDVVTYTC----LIEGLCKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAY 367 (721)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 367 (721)
+.+.|...+....... ..+...... ++......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5666777776665432 112222111 1212222332344445555444332 22222333334444567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 004976 368 EILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLK 410 (721)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 410 (721)
..|+.|..... .......-+..++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77766644211 1333344555566666777777777777654
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.93 E-value=3.2 Score=47.50 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLI 128 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 128 (721)
.++..+...+.++.+..+.... +.++...+.++.++...|++++|.+.|.++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455566666666665544332 334444566666777777777777777655
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.40 E-value=1.3 Score=43.43 Aligned_cols=72 Identities=7% Similarity=0.094 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 004976 598 STLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMAD-----KGVHLDQELTSTI 670 (721)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 670 (721)
..++..+...|++.+|+..+..++... |-+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345556666777777777777766653 55666777777777777777777777766543 3677766554433
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.70 E-value=5.1 Score=45.84 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcCHHhHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRG--FVVNIYAFNLI 143 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l 143 (721)
+...-+.++.++...|++++|..+|+++... +....... .... -+..+.... ...-+..|..+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~----------~~~~----~~~~~~~~~~~~~~l~~YY~hv 905 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQF----------AVLR----EFQEIAEKYHHQNLLSCYYLHL 905 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSC----------SSHH----HHHHHHHTTTSCCSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhh----------hhhc----ccccccccccccccHHHHHHHH
Confidence 4445577899999999999999999987532 11111000 0000 001111110 01122345555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 004976 144 LKGFCRKGEVNKAIELFGEIKSNGVSPDN----CSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCK 219 (721)
Q Consensus 144 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 219 (721)
+..+.+.+.++.+++.-..+++...+.+. ..|..+.+.+...|++++|...+..+..... -......++..++.
T Consensus 906 ~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce 983 (1139)
T 4fhn_B 906 SKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTK 983 (1139)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHh
Confidence 55555666666666555554443211111 1345555566666666666666555544321 22333444444443
Q ss_pred cC------------ChhHHHHHHHHHhHC--CCCCCccchHHHHHHHHhcCChhHHH-HHHHHHHh
Q 004976 220 DG------------RVDEAMGLLEEMKAK--GLDADVVVYSALISGFCSNGSFDKGK-KLFDDMLE 270 (721)
Q Consensus 220 ~~------------~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 270 (721)
.| ..++..+++..-.+. .+...+.-|..|-..+...|++..|- -+|+.+.+
T Consensus 984 ~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 984 QGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 33 334444444432211 11111223444455556677776654 44555443
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.00 E-value=15 Score=34.29 Aligned_cols=26 Identities=15% Similarity=-0.114 Sum_probs=17.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHH
Q 004976 276 NVVTYNSLMHCLCKIGQWKEAIAMLD 301 (721)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 301 (721)
++..+..++..|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566677777777777777776663
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.35 E-value=2.7 Score=41.18 Aligned_cols=120 Identities=8% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004976 45 NSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYA-FSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALG 123 (721)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 123 (721)
.++++.|.+.++.++.....+-..-+. ...|-.+ ...+++.. ..+...++..+...|++.+|..
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~--------~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLR--------DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGT--------TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCC--------chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 468889999999998765221111000 1122222 11222221 2235567778888899999998
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhhHHHHHH
Q 004976 124 VIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKS-----NGVSPDNCSYNTIVN 180 (721)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 180 (721)
.+..++... +.+...+..++.+|.+.|+..+|+..|++..+ .|+.|+..+-...-.
T Consensus 193 ~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 193 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 888888764 55788899999999999999999999887654 488888765444333
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.66 E-value=8.5 Score=28.33 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
+..+-+..+...++.|++.+....+++|.+.+++.-|.++++-...+ ..+...+|..++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44455555555556666666666666666666666666666666543 22333345444443
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.37 E-value=6.1 Score=33.69 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 004976 610 LSDAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 610 ~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 662 (721)
..++.++|.-|...|+ ..-+..|...+..+...|++++|..+|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554433 2334445555555555555555555555555544444
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.90 E-value=7.6 Score=38.57 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004976 526 DYNALMASLCKESSLEQAKRLFIEIRNA--NCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQ 587 (721)
Q Consensus 526 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (721)
+...++..|.+.|++++|.+.|.++... +...-...+..+++.+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666666666666666552 1112223445555555556666666666655543
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.43 E-value=34 Score=33.16 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCCChhhHHHHH
Q 004976 347 VITYNVLIKGLCQKGLVGEAYEILNMMIEKGMMPDVVSYNTLLMGIGKFGKVDEALELFNLVLKEEKYVQLDVVTYNNLI 426 (721)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 426 (721)
......++..|.+.|+.++..+++...... - ..=.-.++.++.+.++..-...+.+. ...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~kak~~k~v~~l~~~~~~~~~~~---~~~- 78 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF--L--------------SSISKAKAAKLVRSLVDMFLDMDAGT---GIE- 78 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG--G--------------GGSCHHHHHHHHHHHHHHHTTSCCCH---HHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H--------------HHhchHHHHHHHHHHHHHHhcCCCcH---HHH-
Confidence 567788999999999999998888876432 0 00011222233333322111111111 111
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHH
Q 004976 427 QGLCKEDRLDEAVKIYHTMAERGISGNLV--TFNILIGKYLTAGIIDKALEMWKHLLELGHVPN-----SVTYSSMIDGF 499 (721)
Q Consensus 427 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 499 (721)
++-+.+.++...... ..-.. .-..++..|...|++.+|.+++..+.+.-...| ...+..-+..|
T Consensus 79 --------~~~~~~~~~~a~~~~-r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~ 149 (394)
T 3txn_A 79 --------VQLCKDCIEWAKQEK-RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTY 149 (394)
T ss_dssp --------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 112222222222211 00001 112567778888888888887777765311111 22344556667
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCChhhHH----HHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 004976 500 CKIGMLNIAKGIFSKMRVS--GNDPTLFDYN----ALMASLC-KESSLEQAKRLFIEIRNANCEPDV------VSFNTMI 566 (721)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~----~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~ 566 (721)
...+++.++...+...... .+.+++.+.. .-+..+. ..++|.+|...|-+....-..... ..|..+.
T Consensus 150 ~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~ 229 (394)
T 3txn_A 150 HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC 229 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 7888888888888776543 1223333222 2233455 678888888877666431101111 1222222
Q ss_pred HHHHcCCCHHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH
Q 004976 567 NGTLKAGDLQSARELYN-NMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNAC 630 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (721)
..-.++..+...++. .....-..|+...+..++.++ ..+++.+...+++..... +..|+.
T Consensus 230 --aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 230 --KIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp --HHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred --HHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence 222333333323222 111111235555555566554 566776666666554322 344554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.74 E-value=5.1 Score=36.03 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=48.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 004976 567 NGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVAS 623 (721)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (721)
....+.|++++|++....-++.. |.|...-..++..+|-.|+|+.|.+-++.+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34667899999999999988875 777888888999999999999999999998876
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.43 E-value=15 Score=28.79 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004976 612 DAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVC 673 (721)
Q Consensus 612 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 673 (721)
+..+-++.+...++.|++.+....+++|.+.+++.-|.++++-...+ ..+...+|..++..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34444555555566777777777777777777777777777766643 33334445555544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.40 E-value=16 Score=36.27 Aligned_cols=62 Identities=6% Similarity=-0.096 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 68 SVCNSLMEALVRSKNYEYAFSVYSKMTCVH--IFPSFLSLSGLIEVFVQTQKPKFALGVIGLIL 129 (721)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 129 (721)
.++..++..+.+.|++++|.+.|.++.... ...-...+..+++.+...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355666777777777777777777766541 12222345566666666666666666666654
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.57 E-value=13 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 004976 611 SDAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 611 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 662 (721)
+++.++|.-|...|+ ...+..|...+..+...|++++|..+|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346666666666544 3345556666666666677777777776666655555
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=76.89 E-value=18 Score=29.81 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 004976 612 DAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHLD 663 (721)
Q Consensus 612 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 663 (721)
++.++|..|...|+ ..-+..|...+..+...|++.+|.++|+..++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35556666665543 33445555666666666666666666666666555553
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.39 E-value=16 Score=31.18 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 004976 572 AGDLQSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNA 629 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 629 (721)
.++..++.++|..|...|+--.. ..|...+..+...|++.+|.++|+..++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45577888888888888665553 56677788888889999999999988887666643
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.92 E-value=21 Score=26.31 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=46.7
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 31 SDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 31 ~~~~~~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 96 (721)
..+..+....+..+.-+.-+..+-++.+...+..|++.+..+.+.++.|-+++.-|+++|+-....
T Consensus 9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 9 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345556666666665566677777777777776777777777778887788888888887766544
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.85 E-value=53 Score=30.83 Aligned_cols=26 Identities=15% Similarity=-0.069 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHH
Q 004976 345 LSVITYNVLIKGLCQKGLVGEAYEIL 370 (721)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 370 (721)
-++.....++..|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35667777777888888877777666
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.65 E-value=8.1 Score=34.77 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 004976 323 CKGGRATKAIDLLNWMVKKGEKLSVITYNVLIKGLCQKGLVGEAYEILNMMIE 375 (721)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 375 (721)
.+.|+++++++.+..-++. .|.|......+++.+|-.|+++.|..-++.+.+
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555444444444 233444444445555555555555544444443
No 272
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=74.03 E-value=41 Score=30.01 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|...+...|+- .|...++.++|..+.+++.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667665532 35665444333322 24557999999888877754
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.42 E-value=39 Score=26.52 Aligned_cols=44 Identities=5% Similarity=0.040 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 86 AFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLIL 129 (721)
Q Consensus 86 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 129 (721)
..+-.+.+...++-|++......++++.+..++..|.++++-+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555554
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.40 E-value=21 Score=31.04 Aligned_cols=52 Identities=8% Similarity=0.139 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 004976 611 SDAKSVYQKMVASGH-KPNACVYDSLLKGFSSQGETEEVFDLIHEMADKGVHL 662 (721)
Q Consensus 611 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 662 (721)
+++..+|.-|...|+ ..-...|...+..+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 567778888877755 3456677777778888888888888888888776666
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.80 E-value=37 Score=27.50 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 004976 576 QSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNA 629 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 629 (721)
+++.++|..|...|+-... ..|...+..+...|++.+|.++|+..++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4488889888888765554 56777888888999999999999999887666643
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.41 E-value=36 Score=24.97 Aligned_cols=18 Identities=6% Similarity=-0.067 Sum_probs=8.4
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004976 149 RKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 149 ~~g~~~~A~~~~~~~~~~ 166 (721)
+.|.-+++...+.++...
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 444444444444444443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.55 E-value=38 Score=24.90 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=21.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 111 VFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 111 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.+...|+|++|..+.+.. +.||...|..+. -.+.|.-+++...+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 344455555554443332 233333333332 23444444444444444443
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.74 E-value=46 Score=27.34 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH
Q 004976 576 QSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNAC 630 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (721)
+++.++|..|...|+-... ..|...+..+...|++.+|.++|+..++.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3477788888888765554 566778888888999999999999998876666543
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.22 E-value=75 Score=27.21 Aligned_cols=107 Identities=16% Similarity=0.041 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004976 558 DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPNACVYDSLLK 637 (721)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 637 (721)
+...-...+.++...|+. ++...+..+.. .++..+-...+.++...|.. ++...+..++. .++..+-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 333333334444444432 23333333332 34444444445555555442 33444444432 345555555555
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004976 638 GFSSQGETEEVFDLIHEMADKGVHLDQELTSTILVCLCN 676 (721)
Q Consensus 638 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 676 (721)
++.+.|. .++...+.++.+ .++..+-...+.++..
T Consensus 166 aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC
T ss_pred HHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHh
Confidence 5555554 345555555553 2344444444444443
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.11 E-value=1.4e+02 Score=30.14 Aligned_cols=67 Identities=12% Similarity=-0.011 Sum_probs=44.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 100 PSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGF-VVN---IYAFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
.....++.+++.|...+.++.|..+..+..-... .++ ...+..+++.+.-.+++.+|.+.|..+...
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3445677888888888888888888887741100 011 123445677777888888888888887765
No 281
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=60.16 E-value=62 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|+..+...|+- .|.-.++.++|..+.+++.+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566677666532 35665444433322 25567999999988877754
No 282
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=59.53 E-value=68 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|+..+...++- .|...|+.++|..+.+++.+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666666532 24665444333322 24557999999888877654
No 283
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=59.14 E-value=57 Score=28.71 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|+..+...++- .|.-.++.++|..+.+++.+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566677666532 35665444433322 25567999999988877654
No 284
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=54.50 E-value=1.2e+02 Score=27.16 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 611 SDAKSVYQKMVAS---GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 611 ~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
+.|.+.|+.+.+. .++|...+...|+- .|...|+.++|..+.+++.+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566667766542 25665444433322 25567999999988877653
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.73 E-value=2.2e+02 Score=31.68 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=70.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKG 151 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 151 (721)
.++..+...|.++-|.++... .+.++..-+.+++++...|++++|.+.|+++. .|...+.....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~---------- 878 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA---------- 878 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------
T ss_pred HHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------
Confidence 356667777777766554322 34455556777888888888888888887763 22211110000
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcC
Q 004976 152 EVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI----TYSTLMDGLCKDG 221 (721)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~ 221 (721)
.......++...... .....-|..++..+-+.+-++.+.++-+..++.--..|.. .|..+..+.+..|
T Consensus 879 ~~~~~~~ll~~~e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 VLREFQEIAEKYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GGHHHHHHHHHTTTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhccCccccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 000111111111100 1122356777788888888888888877777642222222 4556666555443
No 286
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=47.17 E-value=1.6e+02 Score=26.39 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHC--CCCCCHHHHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 004976 610 LSDAKSVYQKMVAS--GHKPNACVYDSLLK-----GFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 610 ~~~A~~~~~~~~~~--~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 657 (721)
.+.|.+.|+++.+. .++|...+...|+- .|...|+.++|..+.+++.+
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667766542 35665444333322 25567999999988887764
No 287
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.21 E-value=1.2e+02 Score=29.80 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKM 93 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 93 (721)
..+.|..-.+.++..|+|++|-++--..
T Consensus 360 Ad~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 360 AEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3344444455555555555555554443
No 288
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.93 E-value=2.3e+02 Score=27.98 Aligned_cols=171 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CChhhHHHHHHHHHh
Q 004976 469 IIDKALEMWKHLLEL--------GHVPNSVTYSSMIDGFCKIGMLNIAKGIFSKMRVSGN-D---PTLFDYNALMASLCK 536 (721)
Q Consensus 469 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~ 536 (721)
..++...+++..... +...+......+... ..|+..++..+++.+..... . ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 456666777776653 222355555555544 56888888888887765422 1 011222211111111
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 004976 537 ESSLEQAKRLFIEIRNANCEPDVVSFNTMINGT---LKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL---- 609 (721)
Q Consensus 537 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 609 (721)
.. . ....+...+..++.++ .+.++.+.|+.++.+|++.|..|....-..+..+...-|.
T Consensus 244 ~~-------------~-~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RS-------------A-RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CC-------------C-C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hh-------------h-ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 10 0 0001112222333333 3567899999999999998866665555555666666565
Q ss_pred -HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 004976 610 -LSDAKSVYQKMVASGHKPNACVYDSLLKGFSSQGETEEVFDLIHEM 655 (721)
Q Consensus 610 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 655 (721)
..-|...++.+...|.|.-.-.+...+..++..-+...+...++.+
T Consensus 310 a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a 356 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAA 356 (447)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3346666666666673322222333333344444444444444433
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.74 E-value=57 Score=28.38 Aligned_cols=53 Identities=25% Similarity=0.346 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 004976 576 QSARELYNNMLQMGLPPDA-LTYSTLIHRFLRFGLLSDAKSVYQKMVASGHKPN 628 (721)
Q Consensus 576 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 628 (721)
+++.++|..|...|+--.. ..|...+..+...|++.+|.++|+..++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5777888888888765554 5677788888889999999999999888765663
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.91 E-value=67 Score=26.28 Aligned_cols=61 Identities=5% Similarity=-0.011 Sum_probs=39.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCChhHHHHHHHHHHhC
Q 004976 36 QLRLLFEKPNSQYAEAVSLFQRAICSDRLP--SGSVCNSLME------ALVRSKNYEYAFSVYSKMTCV 96 (721)
Q Consensus 36 ~l~~l~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~~ 96 (721)
+..++.....|+|-+|-++||.+=...+.+ ....|..|+. ...++|++..|..++.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444444588888888888776554443 3455555555 344578888888888887653
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.75 E-value=1.6e+02 Score=25.89 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=45.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004976 73 LMEALVRSKNYEYAFSVYSKMTCV--HIFP----SFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKG 146 (721)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (721)
-+..+...++|++|..+.++.... +.+. ........++.-...+.-..+..+.+.+ .. ...+......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466778888888888888766543 1111 1122233333333333333344444333 22 3344445555566
Q ss_pred HHhcCChhHHHHHHHHH
Q 004976 147 FCRKGEVNKAIELFGEI 163 (721)
Q Consensus 147 ~~~~g~~~~A~~~~~~~ 163 (721)
+.+.|+-++|..+|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66667777776666444
No 292
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.71 E-value=1.7e+02 Score=24.88 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----HhHHHHHHHHHHHCCCCC
Q 004976 571 KAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFGL-----LSDAKSVYQKMVASGHKP 627 (721)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~ 627 (721)
+..+.+.|+-++-+|++.| .|....-..++.+...-|. ...|...++.....|.|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 4456666666666666666 4444444444444444443 223444445554556443
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.25 E-value=1.7e+02 Score=24.82 Aligned_cols=166 Identities=14% Similarity=0.017 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 50 EAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLIL 129 (721)
Q Consensus 50 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 129 (721)
+++..+-..+.. ++..+-...+..+.+.+.. .+...+.+++. .++...-...+.++...++.+ +...+..++
T Consensus 19 ~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 90 (211)
T 3ltm_A 19 EKVEMYIKNLQD---DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKAL 90 (211)
T ss_dssp GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHH
Confidence 444444444442 2444445555666666653 34444444443 235555555566666666533 333333333
Q ss_pred HCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 004976 130 KRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLIT 209 (721)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 209 (721)
. .+++.+-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++...|.. ++...+..+.. .++...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~v 159 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWV 159 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHH
Confidence 2 345555566666666666533 3344444443 34544444555555555543 23444444443 244444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhH
Q 004976 210 YSTLMDGLCKDGRVDEAMGLLEEMKA 235 (721)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (721)
-...+.++.+.+. ..+...+..+.+
T Consensus 160 r~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 160 RQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4455555555544 334444444443
No 294
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.89 E-value=1.9e+02 Score=24.45 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=17.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004976 571 KAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG 608 (721)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 608 (721)
+..+.+.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455555555556655553333333333333333333
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.57 E-value=55 Score=26.92 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCh
Q 004976 48 YAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFSVYSKMTCV--HIFPSFLSLSGLIEVFVQTQKP 118 (721)
Q Consensus 48 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 118 (721)
.+.+++.++..+.........--..++..+...+..-.|.++++.+... +...+..+.+.-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444444433221112233334445555555555566666655554 4344555555555555555533
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.31 E-value=2.2e+02 Score=25.13 Aligned_cols=91 Identities=9% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004976 529 ALMASLCKESSLEQAKRLFIEIRNA--NCEP----DVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIH 602 (721)
Q Consensus 529 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 602 (721)
.-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3456777888999999888877651 2221 1111122222222222223333334444 32 344555555667
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 004976 603 RFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~ 622 (721)
.+.+.|+-++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77888888888888877754
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.00 E-value=2.5e+02 Score=31.26 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCc----cchHHHHHHHHhcC
Q 004976 209 TYSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADV----VVYSALISGFCSNG 256 (721)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 256 (721)
-|..++..+-+.+-++.+.++-+.+++.--+.|. ..|+.+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888999999999999998888875322232 35677777766554
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=34.58 E-value=2.2e+02 Score=28.57 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 528 NALMASLCKESSLEQAKRLFIEIRNANCEPDVVSFNTMINGTLKAGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLR 606 (721)
Q Consensus 528 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (721)
..|+....-...++.|..+|.++.... +.+...|+.|+-.....|+.-+|.-+|-+.+... .|-..+..++...+.+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 344555555667889999999998865 2344688999888888899888998888888764 5667777777765543
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.73 E-value=2.3e+02 Score=24.32 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004976 572 AGDLQSARELYNNMLQMGLPPDALTYSTLIHRFLRFG 608 (721)
Q Consensus 572 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 608 (721)
..+.+.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4455555555555655553333333333333333333
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.61 E-value=3.3e+02 Score=27.46 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=74.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCh--hh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---
Q 004976 136 NIYAFNLILKGFCRKGEVNKAIELFGEIKSNGV-SPDN--CS-YNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLI--- 208 (721)
Q Consensus 136 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 208 (721)
...+++.+++.|...+.++.|..+..+..---. .++. .. +..+++.+.-.+++.+|.+.+......- +++..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccchhhhh
Confidence 356789999999999999999999998852100 1111 12 3356778889999999999999887642 22221
Q ss_pred ----h--HHHHHHHHHhcCChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 004976 209 ----T--YSTLMDGLCKDGRVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGSFDKGKKLFDD 267 (721)
Q Consensus 209 ----~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (721)
. |..++..+ .|++.+ ..+|. +.+.......|..|..++ +.|+++.-...++.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 1 22233333 466543 22222 111111233477777775 66877665555544
No 301
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=31.30 E-value=1.6e+02 Score=21.74 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=24.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVG 202 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 202 (721)
.+...|+|++|..+.+... .||...|..|- -.+.|-.+++...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3445555555555444333 34555444432 234555555555554444443
No 302
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=30.25 E-value=1.7e+02 Score=21.66 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004976 146 GFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 146 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
.+...|+|++|..+.+... .||...|..|- -.+.|-.+++...+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 3445555555555444333 34544444432 23444445555444444443
No 303
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.71 E-value=3.7e+02 Score=27.01 Aligned_cols=79 Identities=15% Similarity=0.015 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004976 105 LSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELFGEIKSNGVSPDNCSYNTIVNGLCK 184 (721)
Q Consensus 105 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (721)
+..++....-...++.|..+|.++.... |.+...|+.++......|+.-+|+-.|-+.+-.. .|-..+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 4455555556667788888888888775 4467788888887777888777777776666543 5666777777776664
Q ss_pred c
Q 004976 185 A 185 (721)
Q Consensus 185 ~ 185 (721)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 304
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=26.19 E-value=3.3e+02 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred hcCCHhHHHHHHHHHHHC---CCCCCHH-----HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 004976 606 RFGLLSDAKSVYQKMVAS---GHKPNAC-----VYDSLLKGFSSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~---~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 657 (721)
..|+.+.|...|+.+.+. .++|+.. .++.-+-.|.-.++.++|..+.+++.+
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356677777777776642 2455433 222223346677889999888888753
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.12 E-value=2.7e+02 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 004976 179 VNGLCKAKRFKEALDILPDMEAV 201 (721)
Q Consensus 179 ~~~~~~~g~~~~a~~~~~~~~~~ 201 (721)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34567778888888888777664
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.08 E-value=3.7e+02 Score=23.99 Aligned_cols=176 Identities=9% Similarity=-0.032 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCcCHHhHH
Q 004976 66 SGSVCNSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKF----ALGVIGLILKRGFVVNIYAFN 141 (721)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~ 141 (721)
+..+-...+..+.+.|. ..++..+..++.. ++.......+.++.+.|.... ....+...... .++..+..
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~ 109 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRA 109 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHH
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHH
Confidence 33344444555555553 3344444455432 344444455555555553222 12222211111 22444444
Q ss_pred HHHHHHHhcCC-----hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 004976 142 LILKGFCRKGE-----VNKAIELFGEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDG 216 (721)
Q Consensus 142 ~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 216 (721)
..+.++...+. ...+...+..+.+ .++..+-...+.++...|+.+ +...+..+... ++...-...+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~a 182 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 44444444331 2334444444433 244444444455555555422 33334334332 344333333444
Q ss_pred HHhcC-ChhHHHHHHHHHhHCCCCCCccchHHHHHHHHhcCC
Q 004976 217 LCKDG-RVDEAMGLLEEMKAKGLDADVVVYSALISGFCSNGS 257 (721)
Q Consensus 217 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (721)
+...+ +...+...+..+.. .++..+....+.++.+.|+
T Consensus 183 L~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred HHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 43333 12233333333332 1234444444445555553
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.79 E-value=2.8e+02 Score=22.58 Aligned_cols=53 Identities=8% Similarity=-0.010 Sum_probs=31.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 004976 500 CKIGMLNIAKGIFSKMRVSGNDP--TLFDYNALMA------SLCKESSLEQAKRLFIEIRN 552 (721)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 552 (721)
...|++-+|-++++..-.....+ ....|..|++ ...+.|+..-|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34477777777777776554333 3334444444 12346777777777776655
No 308
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.68 E-value=73 Score=22.53 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=10.2
Q ss_pred HcCCChhHHHHHHHHHHH
Q 004976 640 SSQGETEEVFDLIHEMAD 657 (721)
Q Consensus 640 ~~~g~~~~A~~~~~~~~~ 657 (721)
-+.|++++|+.+|.+.++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666655543
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.36 E-value=2.7e+02 Score=23.94 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHCCCCcCHH-------hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004976 118 PKFALGVIGLILKRGFVVNIY-------AFNLILKGFCRKGEVNKAIELFGEIKSN 166 (721)
Q Consensus 118 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 166 (721)
++.|+.+++.+.+...-++.. +--..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 355667777665443211110 1223456788999999999999998875
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.15 E-value=2.7e+02 Score=22.29 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004976 71 NSLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK 117 (721)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (721)
..++..+...+..-.|.++++.+.+.+...+..+.+..+..+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34444444444555555555555554444455555555555555543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.98 E-value=5.3e+02 Score=25.47 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 004976 81 KNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLILKGFCRKGEVNKAIELF 160 (721)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 160 (721)
.+.+-|.++-.+ .+.|.....+..-...+...|++++|..+-....+ |.-.++.+.+.+-..=...|+..--+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 566655555433 45677777777778889999999999998777643 34556666666555444567778888889
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004976 161 GEIKSNGVSPDNCSYNTIVNGLCKAKRFKEALDILPDMEAVGCCPNLITYSTLMDGLCKDGRVDEAMGLLEEM 233 (721)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 233 (721)
..+++.| ..+..---.+++.-..+|+.+-..+++.+- .+..+.. |++.. +..+..-|..+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEe----LGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEE----LGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHH----HHHHH-HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHH----hHhhh-hhcCHHHHHHHHHHc
Confidence 8888877 566655566777777888887777766542 2233332 22221 344666666666554
No 312
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.42 E-value=79 Score=22.34 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=9.6
Q ss_pred cCCChhHHHHHHHHHHH
Q 004976 641 SQGETEEVFDLIHEMAD 657 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~ 657 (721)
+.|++++|+.+|.+.++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55666666665555543
No 313
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.99 E-value=1.4e+02 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 004976 69 VCNSLMEALVRSKNYEYAFSVYSKMT 94 (721)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 94 (721)
.+...+..+.+.|+|++|+...+.+.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45567788888889998888877764
No 314
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.92 E-value=4.1e+02 Score=23.70 Aligned_cols=18 Identities=6% Similarity=-0.284 Sum_probs=8.2
Q ss_pred CChhhHHHHHHHHHhcCC
Q 004976 592 PDALTYSTLIHRFLRFGL 609 (721)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~ 609 (721)
++..+-...+.++...|+
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444555553
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.53 E-value=2.3e+02 Score=22.46 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004976 72 SLMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK 117 (721)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (721)
.++..+...+..-.|.++++.+.+.+...+..+.+..+..+...|-
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444444444455555555555554434445555555555555443
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.63 E-value=2.5e+02 Score=22.34 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004976 73 LMEALVRSKNYEYAFSVYSKMTCVHIFPSFLSLSGLIEVFVQTQK 117 (721)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (721)
++..+...+ .-.|.++++.+.+.+...+..+.+..+..+...|-
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 333344444 45555555555554444455555555555555543
No 317
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.55 E-value=4.4e+02 Score=23.17 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhC---CCCCChhhHHHHH-----HHHHhcCCHhHHHHHHHHHHH
Q 004976 575 LQSARELYNNMLQM---GLPPDALTYSTLI-----HRFLRFGLLSDAKSVYQKMVA 622 (721)
Q Consensus 575 ~~~A~~~~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 622 (721)
.+.|.+.|+.+.+. .++|...+...|+ .-|.-.++.++|.++.+++.+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777765432 4677766553332 334567999998887776643
No 318
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.03 E-value=1.9e+02 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=23.0
Q ss_pred cCCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCchhhHhhHHHHHHh
Q 004976 641 SQGETEEVFDLIHEMADK-----GVHLDQELTSTILVCLCNISEDLDVAKLFPTFSQ 692 (721)
Q Consensus 641 ~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 692 (721)
..|++++|+.+|..+++. ...+........+..-+ ....+.++.|...+.
T Consensus 30 ~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~--~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKC--TEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 446666666665555431 13322222233333322 245556666665554
Done!