Query 004977
Match_columns 721
No_of_seqs 470 out of 2620
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.9E-81 9.9E-86 705.3 38.8 499 81-721 24-538 (539)
2 3ni2_A 4-coumarate:COA ligase; 100.0 4.6E-81 1.6E-85 703.6 40.0 506 76-714 16-535 (536)
3 3g7s_A Long-chain-fatty-acid-- 100.0 6.2E-81 2.1E-85 704.6 40.3 512 81-715 18-543 (549)
4 3etc_A AMP-binding protein; ad 100.0 4.2E-80 1.4E-84 700.2 44.3 510 81-714 55-579 (580)
5 2d1s_A Luciferase, luciferin 4 100.0 3.2E-80 1.1E-84 697.8 41.0 508 79-719 22-548 (548)
6 3r44_A Fatty acyl COA syntheta 100.0 5E-80 1.7E-84 691.6 38.5 495 79-716 13-515 (517)
7 1v25_A Long-chain-fatty-acid-C 100.0 2.6E-80 8.8E-85 697.9 36.2 505 81-716 17-538 (541)
8 4fuq_A Malonyl COA synthetase; 100.0 5.5E-80 1.9E-84 688.9 37.8 490 86-714 4-500 (503)
9 3rix_A Luciferase, luciferin 4 100.0 2.3E-80 7.8E-85 700.1 34.2 510 81-717 19-544 (550)
10 3o83_A Peptide arylation enzym 100.0 8.5E-80 2.9E-84 694.1 34.7 503 79-715 27-541 (544)
11 1pg4_A Acetyl-COA synthetase; 100.0 1.7E-78 5.9E-83 696.5 44.0 526 82-717 76-624 (652)
12 3c5e_A Acyl-coenzyme A synthet 100.0 1.6E-78 5.4E-83 686.4 42.8 511 81-715 37-563 (570)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 8.3E-79 2.8E-83 680.2 39.9 486 81-713 1-503 (504)
14 1amu_A GRSA, gramicidin synthe 100.0 3.1E-79 1.1E-83 691.2 33.4 510 50-712 10-527 (563)
15 1ry2_A Acetyl-coenzyme A synth 100.0 3.2E-78 1.1E-82 694.5 40.3 535 82-717 82-640 (663)
16 3ivr_A Putative long-chain-fat 100.0 6.6E-79 2.2E-83 682.2 32.8 490 81-716 5-503 (509)
17 3e7w_A D-alanine--poly(phospho 100.0 2.5E-77 8.5E-82 669.5 42.1 494 82-715 1-504 (511)
18 3fce_A D-alanine--poly(phospho 100.0 1.7E-77 5.8E-82 671.3 37.6 495 82-715 1-505 (512)
19 3rg2_A Enterobactin synthase c 100.0 9.2E-77 3.1E-81 679.2 42.0 504 78-718 23-538 (617)
20 4gr5_A Non-ribosomal peptide s 100.0 2E-78 6.9E-83 686.8 27.9 485 79-711 72-568 (570)
21 2v7b_A Benzoate-coenzyme A lig 100.0 6.9E-77 2.3E-81 669.1 39.4 501 81-710 23-528 (529)
22 4dg8_A PA1221; ANL superfamily 100.0 1.9E-77 6.5E-82 682.1 32.8 480 79-714 24-513 (620)
23 3l8c_A D-alanine--poly(phospho 100.0 5.8E-77 2E-81 668.7 35.6 498 81-716 3-514 (521)
24 3tsy_A Fusion protein 4-coumar 100.0 2.6E-77 9E-82 718.8 32.9 519 75-720 54-588 (979)
25 2vsq_A Surfactin synthetase su 100.0 1.3E-76 4.4E-81 730.3 32.7 517 43-712 432-958 (1304)
26 3ipl_A 2-succinylbenzoate--COA 100.0 2.7E-76 9.2E-81 660.0 29.3 488 83-715 2-498 (501)
27 3nyq_A Malonyl-COA ligase; A/B 100.0 2.2E-76 7.6E-81 659.7 26.9 476 80-710 20-504 (505)
28 3ite_A SIDN siderophore synthe 100.0 1.1E-74 3.7E-79 656.1 32.0 517 76-715 14-544 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.5E-73 5E-78 649.9 38.1 509 75-720 14-569 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 2E-73 6.8E-78 650.4 32.3 508 80-714 9-567 (590)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2E-61 6.8E-66 537.3 28.4 408 81-581 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.3E-54 4.5E-59 461.0 21.3 313 274-716 36-356 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 3E-47 1E-51 418.2 18.5 351 251-710 71-440 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 4.1E-47 1.4E-51 416.1 18.6 330 271-707 81-430 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 1.8E-46 6E-51 411.3 19.9 346 252-707 70-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1E-29 3.4E-34 271.7 14.3 247 272-592 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 5E-12 1.7E-16 108.5 6.8 97 580-706 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 1.3E-11 4.6E-16 105.6 6.1 97 580-706 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.6 2.2E-07 7.6E-12 101.9 13.4 136 443-605 300-458 (609)
40 4eql_A 4-substituted benzoates 98.6 1.1E-07 3.9E-12 104.1 9.6 136 443-605 295-446 (581)
41 4epl_A Jasmonic acid-amido syn 98.5 9.1E-07 3.1E-11 96.7 13.0 150 442-617 299-473 (581)
42 3qov_A Phenylacetate-coenzyme 91.5 2 6.7E-05 45.6 13.9 105 129-234 104-216 (436)
43 2y27_A Phenylacetate-coenzyme 91.2 1.7 5.9E-05 46.0 13.0 104 129-233 108-219 (437)
44 2y4o_A Phenylacetate-coenzyme 90.5 2.1 7.2E-05 45.4 12.9 104 129-233 110-221 (443)
45 1mdb_A 2,3-dihydroxybenzoate-A 77.1 39 0.0013 36.5 15.5 102 129-234 200-308 (539)
46 3ipl_A 2-succinylbenzoate--COA 76.6 38 0.0013 36.1 15.2 100 129-232 181-282 (501)
47 2d1s_A Luciferase, luciferin 4 76.3 18 0.00062 39.3 12.5 103 129-233 210-318 (548)
48 3hgu_A EHPF; phenazine, antibi 76.1 11 0.00037 38.6 10.1 103 129-233 109-240 (369)
49 3o83_A Peptide arylation enzym 74.0 35 0.0012 36.9 14.1 102 129-234 209-317 (544)
50 3r44_A Fatty acyl COA syntheta 72.4 40 0.0014 36.1 14.0 100 129-233 188-293 (517)
51 3rg2_A Enterobactin synthase c 66.8 86 0.003 34.4 15.4 102 129-234 202-312 (617)
52 1t5h_X 4-chlorobenzoyl COA lig 64.3 41 0.0014 35.9 11.9 101 129-233 171-281 (504)
53 3rix_A Luciferase, luciferin 4 63.8 40 0.0014 36.5 11.8 104 129-233 208-316 (550)
54 3c5e_A Acyl-coenzyme A synthet 61.0 76 0.0026 34.5 13.4 103 129-234 224-332 (570)
55 3e7w_A D-alanine--poly(phospho 60.9 66 0.0023 34.3 12.8 102 129-233 161-269 (511)
56 4gs5_A Acyl-COA synthetase (AM 59.9 40 0.0014 34.2 10.3 99 129-233 55-157 (358)
57 3fce_A D-alanine--poly(phospho 59.9 40 0.0014 36.0 10.8 102 129-233 162-270 (512)
58 1v25_A Long-chain-fatty-acid-C 58.6 52 0.0018 35.5 11.5 104 129-233 194-302 (541)
59 3kxw_A Saframycin MX1 syntheta 57.3 58 0.002 35.5 11.7 102 129-233 185-298 (590)
60 3ni2_A 4-coumarate:COA ligase; 56.2 58 0.002 35.1 11.3 105 129-234 196-307 (536)
61 1pg4_A Acetyl-COA synthetase; 54.3 65 0.0022 35.7 11.6 104 129-234 274-388 (652)
62 4dg8_A PA1221; ANL superfamily 53.8 72 0.0025 35.2 11.7 102 129-234 182-286 (620)
63 3g7s_A Long-chain-fatty-acid-- 52.8 80 0.0027 34.1 11.8 101 129-233 198-305 (549)
64 3etc_A AMP-binding protein; ad 50.6 75 0.0026 34.6 11.2 85 149-233 260-350 (580)
65 4gr5_A Non-ribosomal peptide s 48.9 86 0.0029 34.0 11.3 102 129-234 232-336 (570)
66 1ry2_A Acetyl-coenzyme A synth 48.8 76 0.0026 35.3 11.0 102 130-233 281-393 (663)
67 3ivr_A Putative long-chain-fat 48.2 1.1E+02 0.0038 32.5 11.9 98 129-231 178-279 (509)
68 3ite_A SIDN siderophore synthe 47.6 43 0.0015 36.3 8.6 105 129-233 193-303 (562)
69 1amu_A GRSA, gramicidin synthe 41.8 87 0.003 33.9 9.9 100 129-233 200-302 (563)
70 3nyq_A Malonyl-COA ligase; A/B 41.8 1.3E+02 0.0044 32.0 11.1 85 129-218 173-259 (505)
71 3tbh_A O-acetyl serine sulfhyd 40.8 1.1E+02 0.0037 30.6 9.6 67 145-211 60-127 (334)
72 3tsy_A Fusion protein 4-coumar 38.8 1.6E+02 0.0055 34.4 12.2 106 129-235 243-355 (979)
73 3gqw_A Fatty acid AMP ligase; 36.1 1.3E+02 0.0045 32.3 10.3 103 129-233 194-308 (576)
74 3l8c_A D-alanine--poly(phospho 35.7 2.6E+02 0.0089 29.5 12.4 104 129-233 163-273 (521)
75 3t5a_A Long-chain-fatty-acid-- 33.1 1.5E+02 0.0053 30.9 9.9 101 129-233 201-320 (480)
76 3vc3_A Beta-cyanoalnine syntha 30.8 2.1E+02 0.0071 28.6 9.8 70 142-211 73-142 (344)
77 4fuq_A Malonyl COA synthetase; 30.6 2.5E+02 0.0086 29.6 11.2 97 129-231 173-275 (503)
78 2cvi_A 75AA long hypothetical 30.5 1.6E+02 0.0055 22.1 7.0 36 596-632 15-50 (83)
79 2v7b_A Benzoate-coenzyme A lig 28.7 84 0.0029 33.6 6.9 86 129-217 201-289 (529)
80 3ju7_A Putative PLP-dependent 28.2 1.4E+02 0.0047 30.3 8.1 63 144-209 67-136 (377)
81 2vsq_A Surfactin synthetase su 26.7 1.6E+02 0.0056 35.7 9.6 103 129-235 625-731 (1304)
82 4eez_A Alcohol dehydrogenase 1 25.9 3.1E+02 0.011 27.1 10.3 77 131-210 137-216 (348)
83 4h1h_A LMO1638 protein; MCCF-l 25.7 1.7E+02 0.0058 29.1 8.0 15 151-165 8-22 (327)
84 3euc_A Histidinol-phosphate am 24.2 5.1E+02 0.018 25.3 12.7 55 152-209 106-164 (367)
85 3sr3_A Microcin immunity prote 23.4 2E+02 0.0068 28.7 7.9 60 151-210 9-87 (336)
86 3ijw_A Aminoglycoside N3-acety 22.4 1.3E+02 0.0043 29.1 5.9 25 141-165 18-42 (268)
87 1z7w_A Cysteine synthase; tran 22.0 3.6E+02 0.012 26.4 9.7 65 147-211 57-122 (322)
88 3tqh_A Quinone oxidoreductase; 22.0 2.4E+02 0.0082 27.6 8.4 75 131-210 126-204 (321)
89 4aec_A Cysteine synthase, mito 21.6 3.5E+02 0.012 28.0 9.6 64 147-210 165-229 (430)
90 3tla_A MCCF; serine protease, 21.1 2.2E+02 0.0074 28.9 7.7 60 151-210 39-117 (371)
91 1o69_A Aminotransferase; struc 20.6 2.9E+02 0.01 27.7 9.0 61 146-209 63-129 (394)
92 4e5s_A MCCFLIKE protein (BA_56 20.4 2.2E+02 0.0075 28.3 7.5 16 151-166 8-23 (331)
93 2q3b_A Cysteine synthase A; py 20.2 4.4E+02 0.015 25.6 9.8 65 146-211 57-122 (313)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.9e-81 Score=705.30 Aligned_cols=499 Identities=21% Similarity=0.285 Sum_probs=414.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999985 23 37999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhhcCCCccEEEEecCC
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+++... ..+..+...++.++.++..+..
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987642 2334444556666666654321
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCC
Q 004977 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
.. +.++..... .+.......++|+|+|+|||||||.||||++||+++++.+......+ +++
T Consensus 161 ~~-----------------~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~ 221 (539)
T 1mdb_A 161 EE-----------------FLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLD 221 (539)
T ss_dssp TT-----------------SEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCC
T ss_pred cc-----------------hhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCC
Confidence 10 111111111 11122345789999999999999999999999999999998888887 899
Q ss_pred CCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHHHH
Q 004977 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
++|++++.+|++|.+++.. ++.+|+.|+++++.+ +..+.+. ++++++|+++++|+++..+.+..
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 222 HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHH
T ss_pred CCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCc
Confidence 9999999999999999874 788899999999844 3333333 99999999999999999987642
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004977 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
... ....++||.+++||+++++++.+.+.+.+|
T Consensus 291 ~~~-----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 323 (539)
T 1mdb_A 291 SSR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFG 323 (539)
T ss_dssp HHC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTC
T ss_pred ccc-----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 210 012258999999999999999999998889
Q ss_pred CccccccccccccccccccCCC-CCCCCccCCCcCc-ceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004977 471 APIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
++++|.||+||++..++..... ....+++|+|+++ .+++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|
T Consensus 324 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t 399 (539)
T 1mdb_A 324 CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHN 399 (539)
T ss_dssp SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHH
T ss_pred CcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCC---cCCCcceEEeeCcccchhhcCChhhh
Confidence 9999999999976443322111 1133789999976 5899999 666654 58899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004977 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a 625 (721)
+++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|
T Consensus 400 ~~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a 474 (539)
T 1mdb_A 400 AASFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCV 474 (539)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhhcc--CC--CCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEE
Confidence 99996 56 89999999999999999999999999996 6999999999999999999999999998765 36899
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCC-CCCcccccEEEeeCCCCCCCCCccCcccccC
Q 004977 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK-LDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 704 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~ 704 (721)
+|++.... .+ .++|+++++ ++ ||.|++|+.|++++++ | +|++|||+
T Consensus 475 ~vv~~~~~---------~~-----------------~~~l~~~l~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi~ 521 (539)
T 1mdb_A 475 FIIPRDEA---------PK-----------------AAELKAFLR-ERGLAAYKIPDRVEFVESF--P----QTGVGKVS 521 (539)
T ss_dssp EEEESSSC---------CC-----------------HHHHHHHHH-HTTCCGGGSCSEEEECSSC--C----BCTTSCBC
T ss_pred EEEECCCC---------CC-----------------HHHHHHHHH-hCCCCcccCCCEEEEeccC--C----CCCCcCEe
Confidence 99876321 00 267888888 55 9999999999999987 6 99999999
Q ss_pred hHHHHHHHHHHHHhhhC
Q 004977 705 REQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 705 R~~l~~~~~~~i~~~Y~ 721 (721)
|++|++.|++.|+++|+
T Consensus 522 r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 522 KKALREAISEKLLAGFK 538 (539)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999999996
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.6e-81 Score=703.56 Aligned_cols=506 Identities=23% Similarity=0.305 Sum_probs=417.5
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCC
Q 004977 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~g 155 (721)
.+.+...|++++|.++++++||++|+++.. +|+ ++||+||.++++++|++|++.|+++|
T Consensus 16 ~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~g 74 (536)
T 3ni2_A 16 IYIPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQG 74 (536)
T ss_dssp CCCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556899999999999999999998631 233 79999999999999999999999999
Q ss_pred CEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCC
Q 004977 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... .+ .++.++..
T Consensus 75 d~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 152 (536)
T 3ni2_A 75 DVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSA 152 (536)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999998877766654332 22 34444322
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHh----hC
Q 004977 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LI 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~ 311 (721)
. .....++++...... ..+.....++|+|+|+|||||||.||||++||+++++.+..... .+
T Consensus 153 ~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~ 218 (536)
T 3ni2_A 153 P-------------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218 (536)
T ss_dssp C-------------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred C-------------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccc
Confidence 1 123456666543322 12234567899999999999999999999999999988877654 23
Q ss_pred CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHH
Q 004977 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
.+.++|++++.+|++|.+++.. ++.++..|+++++.+.... ..+...++++++|++.++|+++..+.+..
T Consensus 219 -~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (536)
T 3ni2_A 219 -YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI--------GSLLGLIEKYKVSIAPVVPPVMMSIAKSP 289 (536)
T ss_dssp -CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCH--------HHHHHHHHHHTCCEEEECHHHHHHHHTCS
T ss_pred -cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCH--------HHHHHHHHHhCCeEEEccHHHHHHHHhCc
Confidence 6789999999999999999865 6778999999998543211 11223389999999999999999886521
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-
Q 004977 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~- 469 (721)
. ......++||.+++||+++++++.+.+++.+
T Consensus 290 ~-----------------------------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 322 (536)
T 3ni2_A 290 D-----------------------------------------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP 322 (536)
T ss_dssp C-----------------------------------------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT
T ss_pred c-----------------------------------------------cccCCCccceEEEECCCCCCHHHHHHHHHHCC
Confidence 0 0111236899999999999999999998887
Q ss_pred CCccccccccccccccccccC-----CCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCC
Q 004977 470 GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (721)
Q Consensus 470 g~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (721)
+++++|.||+||++.+++... ......+++|+|+++++++|+|++++..+ ++|+.|||+|+|++++.|||++
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~ 399 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLND 399 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTC
T ss_pred CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCC
Confidence 899999999999987655431 22335689999999999999997667654 4889999999999999999999
Q ss_pred CcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---c
Q 004977 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (721)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~ 621 (721)
|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +
T Consensus 400 p~~t~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 474 (536)
T 3ni2_A 400 PEATSRTID--KE--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474 (536)
T ss_dssp HHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred hhHHHhhcc--CC--CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCc
Confidence 999999996 56 89999999999999999999999999998 5999999999999999999999999997655 3
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCccc
Q 004977 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 701 (721)
Q Consensus 622 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~g 701 (721)
.++|+|++.++. ..+ .++|+++++ ++|+.|++|+.|++++++ | +|++|
T Consensus 475 ~~~a~vv~~~~~----------~~~---------------~~~l~~~l~-~~l~~~~~p~~i~~v~~l--P----~t~~G 522 (536)
T 3ni2_A 475 VPVAFVVKSEKS----------QAT---------------EDEIKQYIS-KQVIFYKRIKRVFFIEAI--P----KAPSG 522 (536)
T ss_dssp EEEEEEEECTTC----------CCC---------------HHHHHHHHH-TTSCGGGCCSEEEECSCC--C----BCTTS
T ss_pred eeEEEEEecCCC----------CCC---------------HHHHHHHHH-HhccCCccccEEEEEecC--C----CCCCC
Confidence 589999977532 111 267889998 999999999999999998 6 99999
Q ss_pred ccChHHHHHHHHH
Q 004977 702 KIKREQLKAKFKD 714 (721)
Q Consensus 702 Ki~R~~l~~~~~~ 714 (721)
||+|++|+++|++
T Consensus 523 Ki~R~~L~~~~~~ 535 (536)
T 3ni2_A 523 KILRKNLKEKLAG 535 (536)
T ss_dssp CBCHHHHHTC---
T ss_pred CeeHHHHHHHhcc
Confidence 9999999998764
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.2e-81 Score=704.60 Aligned_cols=512 Identities=22% Similarity=0.306 Sum_probs=392.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++||++|+++. ++. + ..+.++++||+||.++++++|++|++.|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~-----------~~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISA-----------EPK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEE-----------SSC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeC-----------CCc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 479999999999999999999875 210 0 0123357999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+ ++.++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999988877777665554 4555554321
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004977 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
..+++++...............++|+|+|+|||||||.||||++||+++.+.+......+ ++.++|++
T Consensus 157 -----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 224 (549)
T 3g7s_A 157 -----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTI 224 (549)
T ss_dssp -----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEE
T ss_pred -----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEE
Confidence 234666665443332222222348999999999999999999999999999999988888 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004977 321 LAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++.+|++|.+++...+.++..|+++++. ++..+.+. ++++++|+++++|++++.|.+.......
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~-- 291 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNK-- 291 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCC--
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhcc--
Confidence 9999999999988878889999999884 44444444 9999999999999999999874321100
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh----hC---
Q 004977 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC----MG--- 470 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~----~g--- 470 (721)
....+++|.+++||+++++++.+.+.+. ++
T Consensus 292 -------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 292 -------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp -------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred -------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence 0112589999999999999999888877 56
Q ss_pred CccccccccccccccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccc
Q 004977 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~ 549 (721)
++++|.||+||++.+++...... ...+++|+|+++++++|+|++++..++ +|+.|||+|+||+++.|||++|+.|+
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~ 405 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELG---VGESGEIVIRGPNIFKGYWKREKENQ 405 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEEC---TTCCEEEEEESTTSCSEETTCTTGGG
T ss_pred ccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCC---CCCceEEEEECcchhhhhCCChhhhh
Confidence 89999999999998777655433 345899999999999999977777654 88999999999999999999999999
Q ss_pred cccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEE
Q 004977 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVAL 626 (721)
Q Consensus 550 ~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~ 626 (721)
++|..+.+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+
T Consensus 406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~ 484 (549)
T 3g7s_A 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAF 484 (549)
T ss_dssp TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEE
T ss_pred hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEE
Confidence 999644564459999999999999999999999999998 69999999999999999999999999988663 58899
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChH
Q 004977 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.++.. ...+ .++|+++++ ++||.|++|+.|++++++ | +|++|||+|+
T Consensus 485 vv~~~~~~--------~~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~ 534 (549)
T 3g7s_A 485 IVLKPEYR--------GKVD---------------EEDIIEWVR-ERISGYKRVREVEFVEEL--P----RTASGKLLRR 534 (549)
T ss_dssp EEECSTTT--------TSCC---------------HHHHHHHHH-TTCC-----CCCCEEEEC--C--------------
T ss_pred EEECCCcc--------CcCC---------------HHHHHHHHH-HhccCcccceEEEEeccC--C----CCCCcCEeHH
Confidence 99876410 0000 267889998 999999999999999988 6 9999999999
Q ss_pred HHHHHHHHH
Q 004977 707 QLKAKFKDD 715 (721)
Q Consensus 707 ~l~~~~~~~ 715 (721)
+|++++++.
T Consensus 535 ~L~~~~~~~ 543 (549)
T 3g7s_A 535 LLREKEAEG 543 (549)
T ss_dssp ---------
T ss_pred HHHHHhhcc
Confidence 999998764
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.2e-80 Score=700.19 Aligned_cols=510 Identities=18% Similarity=0.218 Sum_probs=406.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
.+..+++|+++|+++||++|+++.+ +. +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~-------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCD-----------DY-------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEE-----------SS-------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEc-----------CC-------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3455699999999999999999753 11 23368999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch--hHHHhhhhcCCCc-cEEEEecCCCC
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS 237 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~ 237 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+.. ..+......++.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999988765 6666666666665 55565543221
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCC---CCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCC
Q 004977 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
..+.++.+...........+ ....++|+|+|+|||||||.||||+++|.+++..+....... .+
T Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~ 263 (580)
T 3etc_A 197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV 263 (580)
T ss_dssp ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence 12356666655443322212 246789999999999999999999999999998887766666 88
Q ss_pred CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHH
Q 004977 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 315 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
.+++++++.+|++|..+++. ++.++..|+++++.++..+ + +..++..++++++|+++++|++++.|.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-- 335 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-- 335 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSCC--
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhccc--
Confidence 99999999999999988876 6778999999987532221 1 1223333999999999999999998865200
Q ss_pred HHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcc
Q 004977 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
.....++||.+++||+++++++.+.+.+.+|+++
T Consensus 336 ----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i 369 (580)
T 3etc_A 336 ----------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369 (580)
T ss_dssp -------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred ----------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence 1112358999999999999999999999899999
Q ss_pred ccccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc-----ccccccccCCCccc
Q 004977 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT 548 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-----~~v~~gY~~~~~~t 548 (721)
+|+||+||++..++.......+.+++|+|+|+++++|+| +++..+ ++|+.|||+|+| ++++.|||++|+.|
T Consensus 370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~---~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t 445 (580)
T 3etc_A 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445 (580)
T ss_dssp EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCCC---CCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence 999999999887776666666779999999999999999 566654 589999999997 78999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004977 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a 625 (721)
++.| .+ |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||+|.+|+|++.+++ +.++|
T Consensus 446 ~~~f---~~--gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a 519 (580)
T 3etc_A 446 EETW---HD--GYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519 (580)
T ss_dssp HHHE---ET--TEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred Hhhc---CC--CEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEE
Confidence 9999 66 899999999999999999999999999985 999999999999999999999999998766 35889
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccCh
Q 004977 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.++. ..+ +.+.++|+++++ ++|++|++|+.|++++++ | +|++|||+|
T Consensus 520 ~vv~~~~~----------~~~------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~sGKi~R 570 (580)
T 3etc_A 520 TIVLTKDY----------TPS------------DSLKNELQDHVK-NVTAPYKYPRIIEFVPEL--P----KTISGKIRR 570 (580)
T ss_dssp EEEECTTC----------CCC------------HHHHHHHHHHHH-HHSCGGGCCSEEEEECC-----------------
T ss_pred EEEECCCC----------CCC------------HHHHHHHHHHHH-hhCCCccCCeEEEEeCCC--C----CCCCcCCcH
Confidence 99987642 111 223478888888 899999999999999998 6 999999999
Q ss_pred HHHHHHHHH
Q 004977 706 EQLKAKFKD 714 (721)
Q Consensus 706 ~~l~~~~~~ 714 (721)
++|++++++
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999998875
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.2e-80 Score=697.81 Aligned_cols=508 Identities=23% Similarity=0.327 Sum_probs=420.8
Q ss_pred CCCCCHHH-HHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004977 79 KGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 79 ~~~~tl~~-~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~ 157 (721)
+...|+.+ +|.++++++ |++|+++.. ++ +++||+||.++++++|++|+++|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34468999 899999999 999998521 22 37999999999999999999999999999
Q ss_pred EEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCC
Q 004977 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (721)
Q Consensus 158 V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (721)
|+|+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++.+..+.+..+...++....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999887777666666665566666543210
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCC------CCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhh-
Q 004977 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL- 310 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~- 310 (721)
. ....+++++.........+.... .++|+++|+|||||||.||||++||+++.+.+......
T Consensus 160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~ 228 (548)
T 2d1s_A 160 Y-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228 (548)
T ss_dssp B-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred c-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence 0 01234666655432210111111 23899999999999999999999999999988887766
Q ss_pred --CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHH
Q 004977 311 --IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (721)
Q Consensus 311 --~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~ 384 (721)
+ +++++|++++.+|++|++++.. ++.++ .|+++++.+ +..+.+. ++++++|+++++|++++
T Consensus 229 ~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~ 295 (548)
T 2d1s_A 229 YGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFA 295 (548)
T ss_dssp TSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHH
T ss_pred hcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHH
Confidence 5 7889999999999999999877 45556 999999843 3333333 99999999999999999
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHH
Q 004977 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (721)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~ 464 (721)
.|.+... ......++||.+++||+++++++.+.
T Consensus 296 ~l~~~~~-----------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~ 328 (548)
T 2d1s_A 296 ILNKSEL-----------------------------------------------LNKYDLSNLVEIASGGAPLSKEVGEA 328 (548)
T ss_dssp HHHHCSC-----------------------------------------------GGGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhCcc-----------------------------------------------cccccccceeEEEEcCccCCHHHHHH
Confidence 8865210 00112258999999999999999999
Q ss_pred HHHhh-CCccccccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004977 465 INICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 465 ~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
+.+.+ +++++|.||+||++..++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||+
T Consensus 329 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~ 405 (548)
T 2d1s_A 329 VARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVN 405 (548)
T ss_dssp HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETT
T ss_pred HHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC---CCCCCeEEEECCHHHhhhhcC
Confidence 99888 68899999999998877665444456689999999999999997677654 488999999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---
Q 004977 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 406 ~~~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g 480 (548)
T 2d1s_A 406 NPEATKELID--EE--GWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAG 480 (548)
T ss_dssp CHHHHHHHBC--TT--SCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred ChHHhhhccc--CC--cEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCC
Confidence 9999999996 56 89999999999999999999999999997 6999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCccccc-EEEeeCCCCCCCCCccCc
Q 004977 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA-KIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 621 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~-~i~~~~~~~~p~~~~~t~ 699 (721)
+.++|+|++.++. ..+ .++|+++++ ++|+.|++|+ .|++++++ | +|+
T Consensus 481 ~~~~a~vv~~~~~----------~~~---------------~~~l~~~~~-~~l~~~~~p~~~i~~v~~l--P----~t~ 528 (548)
T 2d1s_A 481 ELPGAVVVLESGK----------NMT---------------EKEVMDYVA-SQVSNAKRLRGGVRFVDEV--P----KGL 528 (548)
T ss_dssp EEEEEEEEECTTC----------CCC---------------HHHHHHHHH-TTSCGGGSCTTCEEECSSC--C----BCT
T ss_pred eeeEEEEEEcCCC----------CCC---------------HHHHHHHHH-HhccccccccccEEEccCC--C----CCC
Confidence 3689999987532 101 267888898 9999999999 99999988 6 999
Q ss_pred ccccChHHHHHHHHHHHHhh
Q 004977 700 ALKIKREQLKAKFKDDLQML 719 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~~i~~~ 719 (721)
+||++|++|+++|++.|++|
T Consensus 529 ~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 529 TGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp TSCBCHHHHHHHHHSCC---
T ss_pred cchhHHHHHHHHHhhhhhcC
Confidence 99999999999999988875
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5e-80 Score=691.63 Aligned_cols=495 Identities=22% Similarity=0.326 Sum_probs=410.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004977 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|+++++++|+++|+++. + ..+++||+||.++++++|++|+++|+++||+|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~-----------~----------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 71 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP-----------S----------TDVRMTYAQMNALANRCADVLTALGIAKGDRV 71 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG-----------G----------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC-----------C----------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 45689999999999999999999863 1 11479999999999999999999999999999
Q ss_pred EEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCC
Q 004977 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+..+....+....++.+.
T Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----- 146 (517)
T 3r44_A 72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI----- 146 (517)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-----
T ss_pred EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-----
Confidence 999999999999999999999999999999999999999999999999999988877766654443322111110
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCc
Q 004977 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
...++.+...... ...+.....++|+++|+|||||||.||||++||+++.+.+......+ ++.++|
T Consensus 147 ------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 212 (517)
T 3r44_A 147 ------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRD 212 (517)
T ss_dssp ------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTC
T ss_pred ------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCC
Confidence 0112333333222 12223456789999999999999999999999999999999998888 999999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHH
Q 004977 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 395 (721)
++++.+|++|++++...+.+++.|+++++.+ +..+.+. +.++++|++.++|++++.+.+...
T Consensus 213 ~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~---- 277 (517)
T 3r44_A 213 RLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPE---- 277 (517)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHH----
T ss_pred EEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCcc----
Confidence 9999999999999988666666999998843 3333333 899999999999999999876321
Q ss_pred hhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcccc
Q 004977 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (721)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~ 475 (721)
......+++|.+++||+++++++.+.+... |++++|
T Consensus 278 -------------------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~ 313 (517)
T 3r44_A 278 -------------------------------------------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQ 313 (517)
T ss_dssp -------------------------------------------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEE
T ss_pred -------------------------------------------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEE
Confidence 111223689999999999999999999886 999999
Q ss_pred ccccccccccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004977 476 AYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
+||+||+++.++..... ....+++|+|+++++++|+| +++..++ .| .|||+|+|++++.|||++|+.|+++|
T Consensus 314 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f- 387 (517)
T 3r44_A 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF- 387 (517)
T ss_dssp EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE-
T ss_pred eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh-
Confidence 99999998876654433 34568999999999999999 5665543 55 79999999999999999999999999
Q ss_pred cCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcC
Q 004977 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPS 630 (721)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~ 630 (721)
.+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+|+..
T Consensus 388 --~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~ 462 (517)
T 3r44_A 388 --DN--GWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD 462 (517)
T ss_dssp --ET--TEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred --cC--CCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC
Confidence 66 89999999999999999999999999997 59999999999999999999999999987653 466777433
Q ss_pred hHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004977 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
... .+ .++|+++++ ++||.||+|+.|++++++ | +|++|||+|++|++
T Consensus 463 ~~~---------~~-----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~ 509 (517)
T 3r44_A 463 QNE---------VS-----------------EQQIVEYCG-TRLARYKLPKKVIFAEAI--P----RNPTGKILKTVLRE 509 (517)
T ss_dssp TTT---------CC-----------------HHHHHHHHH-HHSCGGGSCSEEEECSCC--C----BCTTCCBCHHHHHH
T ss_pred CCC---------CC-----------------HHHHHHHHH-HhCCCCCCCCEEEEECCC--C----CCCCcCccHHHHHH
Confidence 211 00 267888888 899999999999999998 6 99999999999999
Q ss_pred HHHHHH
Q 004977 711 KFKDDL 716 (721)
Q Consensus 711 ~~~~~i 716 (721)
+|.+.+
T Consensus 510 ~~~~~~ 515 (517)
T 3r44_A 510 QYSATV 515 (517)
T ss_dssp HHGGGC
T ss_pred HHHhhc
Confidence 998765
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.6e-80 Score=697.89 Aligned_cols=505 Identities=23% Similarity=0.313 Sum_probs=384.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998531 1 12257999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++++..+.+..+...++.++.++.++.....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999998887777777777777777776543210
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHH--HhhCCCCCCCc
Q 004977 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD 318 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d 318 (721)
...+++++...... .....++|+++|+|||||||.||||++||+++++..... ...+ .++++|
T Consensus 156 ----------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d 220 (541)
T 1v25_A 156 ----------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKD 220 (541)
T ss_dssp ----------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTC
T ss_pred ----------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCC
Confidence 12355555432211 134567899999999999999999999999998776653 2344 788999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004977 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|++++...+.+++.|+++++.+.. .+ +..+...++++++|+++++|+++..|.+.....
T Consensus 221 ~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 288 (541)
T 1v25_A 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LD-----PASLVELFDGEGVTFTAGVPTVWLALADYLEST----- 288 (541)
T ss_dssp EEEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CS-----HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----
T ss_pred EEEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CC-----HHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----
Confidence 999999999999987778889999999984321 11 122233399999999999999999987643211
Q ss_pred chhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCccccccc
Q 004977 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....++||.+++||+++++++.+.+ +.+|++++|.||
T Consensus 289 ------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG 325 (541)
T 1v25_A 289 ------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYG 325 (541)
T ss_dssp ------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEE
T ss_pred ------------------------------------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeeccc
Confidence 0112589999999999999999988 557999999999
Q ss_pred cccccccccccCCCC-----------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcc
Q 004977 479 LTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (721)
+||++.+++...... ...+++|+|+|+++++|+| +++..++ .+.++.|||+|+||+++.|||++|+.
T Consensus 326 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred ccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCChhh
Confidence 999987766543321 1237899999999999999 6666544 11236899999999999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEE
Q 004977 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~ 624 (721)
|+++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++
T Consensus 404 t~~~f~--~~--g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 478 (541)
T 1v25_A 404 TRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478 (541)
T ss_dssp HHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred hhhhcc--CC--CCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEE
Confidence 999996 56 89999999999999999999999999997 6999999999999999999999999998765 3688
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHC-CCCCcccccEEEeeCCCCCCCCCccCccccc
Q 004977 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA-KLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 625 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
|+|++..... -.++++++++ . +||.|++|+.|++++++ | +|++||+
T Consensus 479 a~vv~~~~~~--------------------------~~~~l~~~~~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi 525 (541)
T 1v25_A 479 AVVVPRGEKP--------------------------TPEELNEHLL-KAGFAKWQLPDAYVFAEEI--P----RTSAGKF 525 (541)
T ss_dssp ECC----------------------------------------------CCCTTTSCSBC--------------------
T ss_pred EEEEECCCCC--------------------------CHHHHHHHHH-hccCccccCCcEEEEeCCC--C----CCCccCe
Confidence 9988762110 0256778887 6 89999999999999987 6 9999999
Q ss_pred ChHHHHHHHHHHH
Q 004977 704 KREQLKAKFKDDL 716 (721)
Q Consensus 704 ~R~~l~~~~~~~i 716 (721)
+|++|++.|++.+
T Consensus 526 ~r~~L~~~~~~~~ 538 (541)
T 1v25_A 526 LKRALREQYKNYY 538 (541)
T ss_dssp CCTTHHHHSTTSS
T ss_pred eHHHHHHHHHHhh
Confidence 9999999987654
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.5e-80 Score=688.87 Aligned_cols=490 Identities=24% Similarity=0.358 Sum_probs=406.3
Q ss_pred HHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCc
Q 004977 86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165 (721)
Q Consensus 86 ~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~ 165 (721)
++|++.++++|+++|+..... +|+ ++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 478899999999999985320 343 799999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCccCCccC
Q 004977 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245 (721)
Q Consensus 166 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 245 (721)
++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+..+.+..+...... .++.++....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 133 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------- 133 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence 999999999999999999999999999999999999999999998876655554433322 2333322110
Q ss_pred CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEEEeccC
Q 004977 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325 (721)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~p 325 (721)
..+.+.... ...........++|+|+|+|||||||.||||++||+++.+.+......+ +++++|++++.+|
T Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p 204 (503)
T 4fuq_A 134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP 204 (503)
T ss_dssp -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence 112222221 1222233456789999999999999999999999999999999998888 9999999999999
Q ss_pred hHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004977 326 LAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (721)
Q Consensus 326 l~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (721)
++|.+++.. .+.+++.|+++++.+ +..+.+. ++ ++|+++++|+++..+++...
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~---------- 261 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPR---------- 261 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTT----------
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCC----------
Confidence 999999755 677889999998843 3333333 55 89999999999998865210
Q ss_pred hHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcccccccccc
Q 004977 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (721)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE 481 (721)
......+++|.+++||+++++++.+.+.+.+|++++|.||+||
T Consensus 262 -------------------------------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 262 -------------------------------------LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp -------------------------------------CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred -------------------------------------ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 0011225899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcce
Q 004977 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (721)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw 561 (721)
++..++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++|+.|++.|. .+ ||
T Consensus 305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--~~--g~ 377 (503)
T 4fuq_A 305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKEL---PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR--DD--GF 377 (503)
T ss_dssp TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHTBC--TT--SC
T ss_pred cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCC---cCCCceEEEEECCchhhhhcCChhhhHhhhC--CC--CC
Confidence 99876544444556689999999999999997777664 4899999999999999999999999999996 56 89
Q ss_pred EeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHH
Q 004977 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWA 638 (721)
Q Consensus 562 ~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~~~~~~~~ 638 (721)
|+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+|++.++.
T Consensus 378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~----- 451 (503)
T 4fuq_A 378 FITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA----- 451 (503)
T ss_dssp EEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-----
T ss_pred eEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC-----
Confidence 999999999999999999999999997 59999999999999999999999999987653 588999987542
Q ss_pred HHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004977 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
..+ .++++++++ ++||+||+|+.|++++++ | +|++||++|++|+++|++
T Consensus 452 -----~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 452 -----TID---------------EAQVLHGLD-GQLAKFKMPKKVIFVDDL--P----RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp -----CCC---------------HHHHHHHHB-TTBCGGGCCSEEEEESCC--C----BCTTSCBCHHHHHHHTTT
T ss_pred -----CCC---------------HHHHHHHHH-hhcccCCCCCEEEEECCC--C----CCcccceeHHHHHHHHHH
Confidence 111 257888888 999999999999999998 6 999999999999998864
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.3e-80 Score=700.14 Aligned_cols=510 Identities=22% Similarity=0.289 Sum_probs=335.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|.++++++|+++|++... |+. ..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4799999999999999999986321 111 1137999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.+..++.++.....
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-- 158 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB--
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc--
Confidence 999999999999999999999999999999999999999999999999999888888888888888888887653211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCC------CCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhC--C
Q 004977 241 SGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--P 312 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~ 312 (721)
....++.++........ .+.....++|+|+|+|||||||.||||++||+++++.+......+ .
T Consensus 159 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~ 229 (550)
T 3rix_A 159 ---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229 (550)
T ss_dssp ---------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSC
T ss_pred ---------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccc
Confidence 12345555554322211 111223468899999999999999999999999999887776542 2
Q ss_pred CCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHHH
Q 004977 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
.+.++|++++.+|++|++++...+.++..|+++++.+ +..+.+. ++++++|+++++|+++..+.+.
T Consensus 230 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 298 (550)
T 3rix_A 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKS 298 (550)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHC
T ss_pred cCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhC
Confidence 6788999999999999999988888999999999843 3333333 9999999999999999998752
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004977 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.. ......++||.+++||+++++++.+.+.+.+
T Consensus 299 ~~-----------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 299 TL-----------------------------------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp CG-----------------------------------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred cc-----------------------------------------------ccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 11 0111236899999999999999999999988
Q ss_pred CCc-cccccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004977 470 GAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 470 g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
+.. ++|.||+||++..++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++|+.|
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t 408 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEAT 408 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred CCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhh
Confidence 875 89999999999888777666667799999999999999997667654 58899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEE
Q 004977 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a 625 (721)
++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|
T Consensus 409 ~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a 483 (550)
T 3rix_A 409 NALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483 (550)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTCCEEEC-------------------------------------------------
T ss_pred hhhcC--CC--CCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEE
Confidence 99996 56 89999999999999999999999999998 69999999999999999999999999988663 5788
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCccccc-EEEeeCCCCCCCCCccCcccccC
Q 004977 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA-KIKLMPEPWTPEAGLVTAALKIK 704 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~-~i~~~~~~~~p~~~~~t~~gKi~ 704 (721)
+|++.++.. .-.++|+++++ .+|++|+.|. .|++++++ | +|++|||+
T Consensus 484 ~vv~~~~~~-------------------------~~~~~l~~~~~-~~l~~~~~~~~~i~~v~~l--P----~t~~GKi~ 531 (550)
T 3rix_A 484 VVVLEHGKT-------------------------MTEKEIVDYVA-SQVTTAKKLRGGVVFVDEV--P----KGLTGKLD 531 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCC-------------------------CCHHHHHHHHH-HhcccccccCCceEEEeec--C----CCCCccee
Confidence 888775431 01267888888 8899886554 68899988 6 99999999
Q ss_pred hHHHHHHHHHHHH
Q 004977 705 REQLKAKFKDDLQ 717 (721)
Q Consensus 705 R~~l~~~~~~~i~ 717 (721)
|++|++++.+..+
T Consensus 532 r~~L~~~~~~~~~ 544 (550)
T 3rix_A 532 ARKIREILIKAKK 544 (550)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987654
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.5e-80 Score=694.13 Aligned_cols=503 Identities=19% Similarity=0.238 Sum_probs=332.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004977 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 158 (721)
....|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 83 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA 83 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence 4457999999999999999999985 33 379999999999999999999999999999
Q ss_pred EEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhhcCCCccEEEEec
Q 004977 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 159 ~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~ 233 (721)
+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+..+....+....++..+
T Consensus 84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
T 3o83_A 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163 (544)
T ss_dssp EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence 9999999999999999999999999999999999999999999999999987653 33444445556666666654
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCC
Q 004977 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
.... ...+.++...............++|+|+|+|||||||.||||++||+++.+.+......+ +
T Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 3211 123444444333332223456789999999999999999999999999999999998888 9
Q ss_pred CCCCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHH
Q 004977 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
+.++|++++++|++|.+++.. ++.++..|+++++.+.... ..++..++++++|+++++|+++..+++...
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 300 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEP--------LNCFSIIQRHQVNMASLVPSAVIMWLEKAA 300 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCH--------HHHHHHHHHHTCCEEEECHHHHHHHHHHHT
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCH--------HHHHHHHHHHCCCEEEechHHHHHHHhchh
Confidence 999999999999999999874 6788999999998433211 112233999999999999999999876432
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004977 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
... ...++||.+++||+++++++.+.+.+.+|+
T Consensus 301 ~~~-----------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 333 (544)
T 3o83_A 301 QYK-----------------------------------------------DQIQSLKLLQVGGASFPESLARQVPEVLNC 333 (544)
T ss_dssp TTH-----------------------------------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCS
T ss_pred hcc-----------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCC
Confidence 110 011589999999999999999999998999
Q ss_pred ccccccccccccccccccCCCC-CCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccc
Q 004977 472 PIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (721)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~ 549 (721)
+++|.||+||++..++...... ...+++|+|+ ++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|+
T Consensus 334 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 409 (544)
T 3o83_A 334 KLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPEHNS 409 (544)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHHHHH
T ss_pred cEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChhhhh
Confidence 9999999999886544332211 1236899996 899999999 677654 589999999999999999999999999
Q ss_pred cccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEE
Q 004977 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVAL 626 (721)
Q Consensus 550 ~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~ 626 (721)
++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+
T Consensus 410 ~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~ 484 (544)
T 3o83_A 410 QVFD--ED--NYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484 (544)
T ss_dssp HHBC--TT--CCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------
T ss_pred hhCC--CC--CCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEE
Confidence 9996 56 89999999999999999999999999996 69999999999999999999999999987653 58889
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChH
Q 004977 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.+... ..+++++++++.+||.|++|+.|++++++ | +|++|||+|+
T Consensus 485 vv~~~~~~--------------------------~~~~l~~~~~~~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~ 532 (544)
T 3o83_A 485 IVSRNPEL--------------------------KAVVLRRHLMELGIAQYKLPDQIKLIESL--P----LTAVGKVDKK 532 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCCC--------------------------CHHHHHHHHHhCCCCcccCCcEEEEeccC--C----CCCCCCCcHH
Confidence 88765321 02567788873389999999999999988 6 9999999999
Q ss_pred HHHHHHHHH
Q 004977 707 QLKAKFKDD 715 (721)
Q Consensus 707 ~l~~~~~~~ 715 (721)
+|++++++.
T Consensus 533 ~L~~~~~~~ 541 (544)
T 3o83_A 533 QLRSILNTS 541 (544)
T ss_dssp ---------
T ss_pred HHHHHHhhc
Confidence 999998753
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.7e-78 Score=696.50 Aligned_cols=526 Identities=17% Similarity=0.221 Sum_probs=422.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004977 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (721)
++++++|+++++++||++|+++.. + . .+..+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG----------D-D------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC----------S-S------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 578999999999999999999742 1 0 1233689999999999999999999999999999999
Q ss_pred ccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhhcCC--CccEEE
Q 004977 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI 230 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~ii 230 (721)
++|++|+++++|||+++|++++|+++.++++++.++|++++++++|+++... +.+.......+ .++.++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999987642 23444433332 566777
Q ss_pred EecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHH-HHHh
Q 004977 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT 309 (721)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~ 309 (721)
.++...... ... .....+|+++...... ........++|+++|+|||||||.||||++||++++..+. ....
T Consensus 219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 291 (652)
T 1pg4_A 219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291 (652)
T ss_dssp EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence 765432110 000 1123567777654322 1223445689999999999999999999999999887764 4445
Q ss_pred hCCCCCCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHH
Q 004977 310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
.+ ++.++|++++++|++|+++.. .++.+|+.|+++++.+....... +..++..++++++|+++++|++++.|.+
T Consensus 292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 56 899999999999999999984 47889999999998543211111 2233444999999999999999998865
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004977 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
..... .+..+.++||.+++||+++++++.+++.+.
T Consensus 367 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 401 (652)
T 1pg4_A 367 EGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKK 401 (652)
T ss_dssp TGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred cCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence 31100 011123689999999999999999999988
Q ss_pred hC---CccccccccccccccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccc
Q 004977 469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY 541 (721)
Q Consensus 469 ~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY 541 (721)
+| +++++.||+||++..++...+. ..+.+++|+|++|++++|+| ++|..+ ++|+.|||+|+| |+++.||
T Consensus 402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v---~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTCCCEE
T ss_pred hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc---CCCceEEEEEccCCCchhhhh
Confidence 88 8999999999999776655432 34568999999999999999 566654 478899999999 7999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC-
Q 004977 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
|++|+.+.+.|....+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 478 ~~~~e~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 554 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAI 554 (652)
T ss_dssp TTCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred cCCHHHHHhhhhhcCC--CEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence 9999999888752234 89999999999999999999999999998 5999999999999999999999999998764
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccC
Q 004977 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++|+|+++++. .. + +++.++|+++++ ++|++|++|+.|++++++ | +|
T Consensus 555 ~g~~l~a~Vv~~~~~----------~~--------~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~T 605 (652)
T 1pg4_A 555 KGQAIYAYVTLNHGE----------EP--------S----PELYAEVRNWVR-KEIGPLATPDVLHWTDSL--P----KT 605 (652)
T ss_dssp TEEEEEEEEEECTTC----------CC--------C----HHHHHHHHHHHH-HHTCGGGCCSEEEECSCC--C----BC
T ss_pred CCeEEEEEEEECCCC----------CC--------C----HHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC--C----CC
Confidence 3699999987642 10 1 123467888888 889999999999999998 6 99
Q ss_pred cccccChHHHHHHHHHHHH
Q 004977 699 AALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~ 717 (721)
++|||+|++|++.+.++++
T Consensus 606 ~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 606 RSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp TTSCBCHHHHHHHHHTC--
T ss_pred CCccchHHHHHHHHhCCCC
Confidence 9999999999999987653
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.6e-78 Score=686.39 Aligned_cols=511 Identities=18% Similarity=0.252 Sum_probs=420.2
Q ss_pred CCCHHHHHHHHHHh-----CCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhC-CCCC
Q 004977 81 ASTMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNV 154 (721)
Q Consensus 81 ~~tl~~~~~~~a~~-----~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-Gv~~ 154 (721)
.+++.++|++++++ +||++|+++. ++. +..+++||+||.++++++|++|++. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 35678999999999 9999999874 211 1235799999999999999999999 9999
Q ss_pred CCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecC
Q 004977 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (721)
Q Consensus 155 gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 234 (721)
||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+..+.+..+...++.++.++.++.
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999888877777777788877777654
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHH-HHHHHHhhCCC
Q 004977 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPN 313 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~ 313 (721)
.... ....++++....... .......++|+++|+|||||||.||||++||+.+.+ ..... ..+ +
T Consensus 179 ~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~-~ 243 (570)
T 3c5e_A 179 KSCD------------GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT-G 243 (570)
T ss_dssp SCCT------------TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT-S
T ss_pred cCcc------------ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc-C
Confidence 2110 124566665543221 122345789999999999999999999999994332 33333 455 8
Q ss_pred CCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHH
Q 004977 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 392 (721)
+.++|++++.+|++|++++.. ++.++..|+++++.+...+ + +..+...++++++|+++++|++++.+.+..
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-- 315 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKF-D-----PLVILKTLSSYPIKSMMGAPIVYRMLLQQD-- 315 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSC-C-----HHHHHHHHHHSCCCEEEECHHHHHHHHTSC--
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCC-C-----HHHHHHHHHHhCCeEEeccHHHHHHHHhcc--
Confidence 899999999999999999874 7788999999988432111 1 122333399999999999999999886520
Q ss_pred HHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCc
Q 004977 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472 (721)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~ 472 (721)
......++||.+++||+++++++.+.+.+.+|++
T Consensus 316 ----------------------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~ 349 (570)
T 3c5e_A 316 ----------------------------------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLD 349 (570)
T ss_dssp ----------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCC
T ss_pred ----------------------------------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCc
Confidence 0001125899999999999999999999888999
Q ss_pred cccccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEc-----cccccccccCCCcc
Q 004977 473 IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYFNNPGK 547 (721)
Q Consensus 473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-----g~~v~~gY~~~~~~ 547 (721)
++|.||+||++..++.........+++|+|+|+++++|+| +++..+ ++|+.|||+|+ |++++.|||++|+.
T Consensus 350 i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~ 425 (570)
T 3c5e_A 350 IRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYVDNPDK 425 (570)
T ss_dssp CEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEETTCHHH
T ss_pred hhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhccccCChhH
Confidence 9999999999977665544445668999999999999999 566654 58899999999 99999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEE
Q 004977 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~ 624 (721)
|.+.| .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++
T Consensus 426 t~~~f---~~--~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~ 499 (570)
T 3c5e_A 426 TAANI---RG--DFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499 (570)
T ss_dssp HHHTE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred hhhhh---cC--CccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEE
Confidence 99999 56 89999999999999999999999999997 6999999999999999999999999998765 3588
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccC
Q 004977 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 704 (721)
Q Consensus 625 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~ 704 (721)
|+|++.++... . . .+.+.++|+++++ .+||.|++|+.|++++++ | +|++||++
T Consensus 500 a~vv~~~~~~~--------~---------~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~ 552 (570)
T 3c5e_A 500 AFVVLASQFLS--------H---------D---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL--P----KTVTGKIQ 552 (570)
T ss_dssp EEEEECGGGTT--------S---------C---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC--C----BCTTCCBC
T ss_pred EEEEECCcccC--------c---------c---hHHHHHHHHHHHH-hhCccccCCcEEEEeccC--C----CCCCcCCc
Confidence 99998764200 0 0 1223578888888 899999999999999987 6 99999999
Q ss_pred hHHHHHHHHHH
Q 004977 705 REQLKAKFKDD 715 (721)
Q Consensus 705 R~~l~~~~~~~ 715 (721)
|++|++.+.+.
T Consensus 553 R~~L~~~~~~~ 563 (570)
T 3c5e_A 553 RAKLRDKEWKM 563 (570)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=8.3e-79 Score=680.24 Aligned_cols=486 Identities=21% Similarity=0.294 Sum_probs=396.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
+.|+.++|+++++++||++|+.+.. ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998520 13 37999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE--CccchhHHHhhhhcCCCccEEEEecCCCCC
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+ +....+.+.. ..+.++ ++.
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~------- 128 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-IIF------- 128 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EEE-------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eEE-------
Confidence 999999999999999999999999999999999999999999999999 6665444311 112222 222
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCC----CCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCC
Q 004977 239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
++++..... ..........++|+|+|+|||||||.||||++||+++.+.+......+ ++
T Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 129 ----------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp ----------------GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred ----------------ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 222211100 111112345689999999999999999999999999999988887777 77
Q ss_pred --CCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHH
Q 004977 315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 315 --~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
+++|++++.+|++|++++. .++.++..|+++++.+ +..+.+. ++++++|+++++|++++.|.+
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence 8899999999999999985 4788899999999844 3333333 899999999999999999876
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004977 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
...... .....++||.+++||+++++++.+.+.+.
T Consensus 261 ~~~~~~---------------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAG---------------------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTT---------------------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcccc---------------------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 321000 00112589999999999999999999998
Q ss_pred hCCccccccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEc-cccccccccCCCcc
Q 004977 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK 547 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~~~~ 547 (721)
++++++|.||+||++.. .... ....+++|+|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~~-~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMNS-LYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEEE-EEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeecccccccc-cccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 89999999999999432 2221 34568999999999999999 44422223568999999999 99999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEE
Q 004977 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~ 624 (721)
|++.| .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++
T Consensus 372 t~~~f---~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~ 445 (504)
T 1t5h_X 372 TAEKL---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVT 445 (504)
T ss_dssp HHHHE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEE
T ss_pred hhhhh---cC--CccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEE
Confidence 99999 66 89999999999999999999999999997 6999999999999999999999999998875 3699
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHC-CCCCcccccEEEeeCCCCCCCCCccCccccc
Q 004977 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA-KLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 625 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
|+|++.++. ..+ .++|+++++ . +||+||+|+.|++++++ | +|++|||
T Consensus 446 a~vv~~~~~----------~~~---------------~~~l~~~~~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi 493 (504)
T 1t5h_X 446 ACVVPRLGE----------TLS---------------ADALDTFCR-SSELADFKRPKRYFILDQL--P----KNALNKV 493 (504)
T ss_dssp EEEEECTTC----------CCC---------------HHHHHHHHH-TSSCCGGGSCSEEEECSCC--C----BCTTSCB
T ss_pred EEEEecCCc----------CcC---------------HHHHHHHHh-hccCcccccceEEEEhhhC--C----CCCCCCE
Confidence 999987542 000 267888898 6 99999999999999987 6 9999999
Q ss_pred ChHHHHHHHH
Q 004977 704 KREQLKAKFK 713 (721)
Q Consensus 704 ~R~~l~~~~~ 713 (721)
+|++|+++|+
T Consensus 494 ~r~~L~~~~~ 503 (504)
T 1t5h_X 494 LRRQLVQQVS 503 (504)
T ss_dssp CHHHHHHHHC
T ss_pred eHHHHHHHhc
Confidence 9999998874
No 14
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.1e-79 Score=691.16 Aligned_cols=510 Identities=21% Similarity=0.254 Sum_probs=406.2
Q ss_pred ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcE
Q 004977 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (721)
Q Consensus 50 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (721)
+..++.+.+.+++.+...++ ....+++...|+.++|+++++++||++|+++ ++ +
T Consensus 10 ~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~-----------~ 63 (563)
T 1amu_A 10 IHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------EN-----------E 63 (563)
T ss_dssp -------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TT-----------E
T ss_pred ccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CC-----------c
Confidence 56667777777766654333 2334456568999999999999999999985 33 3
Q ss_pred EeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004977 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~ 143 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 143 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhhcCCCccEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCC
Q 004977 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 289 (721)
.+....+..+ .....+..++.... .. ...........++|+|+|+|||||||.
T Consensus 144 ~~~~~~~~~~----~~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~ 196 (563)
T 1amu_A 144 KHLVHLIHNI----QFNGQVEIFEEDTI---------------------KI--REGTNLHVPSKSTDLAYVIYTSGTTGN 196 (563)
T ss_dssp GGGHHHHTTS----CCCSEEEECCCSTT---------------------TT--SCCSCCCCCCCTTSEEEEEEEC-----
T ss_pred Cchhhhhhhc----cccCceeeecchhh---------------------cc--ccCccCCCCCCCCCeEEEEECCCCCCC
Confidence 8765443322 11122322221100 00 001111234567899999999999999
Q ss_pred cchheeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcce
Q 004977 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369 (721)
Q Consensus 290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (721)
||||++||+++.+.+......+ +++++|++++++|++|.+++..++.+|+.|+++++.+.....+. ..+...++
T Consensus 197 PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~i~ 270 (563)
T 1amu_A 197 PKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF-----VKFEQYIN 270 (563)
T ss_dssp CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----HHHHHHHH
T ss_pred CcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----HHHHHHHH
Confidence 9999999999999988888887 89999999999999999998888889999999998543222221 12233388
Q ss_pred eecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEE
Q 004977 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449 (721)
Q Consensus 370 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 449 (721)
++++|++.++|+++..+... ..+++|.
T Consensus 271 ~~~~t~~~~~P~~~~~l~~~-----------------------------------------------------~~~~lr~ 297 (563)
T 1amu_A 271 QKEITVITLPPTYVVHLDPE-----------------------------------------------------RILSIQT 297 (563)
T ss_dssp HTTCCEEEECHHHHTTSCTT-----------------------------------------------------TCCSCSE
T ss_pred HcCCcEEEeCHHHHHHHHhc-----------------------------------------------------ccccccE
Confidence 99999999999998766321 0148999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCccccccccccccccccccCCCC---CCCCccCCCcCcceEEEEecCCCCcccCCCCCC
Q 004977 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526 (721)
Q Consensus 450 v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~ 526 (721)
+++||+++++++.+.+.+. ++++|+||+||++.+++...... ....++|+|+|+++++|+| +++..+ ++|+
T Consensus 298 ~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~ 371 (563)
T 1amu_A 298 LITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGE 371 (563)
T ss_dssp EEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTC
T ss_pred EEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCC
Confidence 9999999999999988763 78999999999987766543322 2457899999999999999 666654 5889
Q ss_pred cceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHh
Q 004977 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604 (721)
Q Consensus 527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~ 604 (721)
.|||+|+|++++.|||++|+.|+++|..++ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.
T Consensus 372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~ 450 (563)
T 1amu_A 372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILL 450 (563)
T ss_dssp EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHT
T ss_pred cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHH
Confidence 999999999999999999999999995321 34579999999999999999999999999998 699999999999999
Q ss_pred cCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCccccc
Q 004977 605 SSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA 681 (721)
Q Consensus 605 ~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~ 681 (721)
+||+|.+|+|++.++. +.++|+|++.... + .++|+++++ ++||.||+|+
T Consensus 451 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~----------~-----------------~~~l~~~l~-~~L~~y~~P~ 502 (563)
T 1amu_A 451 KHMYISETAVSVHKDHQEQPYLCAYFVSEKHI----------P-----------------LEQLRQFSS-EELPTYMIPS 502 (563)
T ss_dssp TSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------C-----------------HHHHHHHHH-HHSCGGGSCS
T ss_pred hCCCcceEEEEEeecCCCCeEEEEEEEeCCCC----------C-----------------HHHHHHHHH-hhCchhhCCc
Confidence 9999999999998764 3689999875321 0 267888888 8999999999
Q ss_pred EEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004977 682 KIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 682 ~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
.|++++++ | +|++|||+|++|++.+
T Consensus 503 ~i~~v~~l--P----~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 503 YFIQLDKM--P----LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEECSSC--C----BCTTSSBCGGGSCCCC
T ss_pred EEEEeccc--C----CCCCcChhHHhcCCcc
Confidence 99999998 6 9999999999998643
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.2e-78 Score=694.46 Aligned_cols=535 Identities=16% Similarity=0.187 Sum_probs=421.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEE
Q 004977 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~-~~Gv~~gd~V~i 160 (721)
++++++|+++++++||++|+++.. .. .+..+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i 144 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 144 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred cHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 689999999999999999999742 10 123358999999999999999999 999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhhcCCCccEEEE
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIY 231 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~ 231 (721)
+++|++|+++++|||+++|++++|+++.++.+++.++|++++++++|+++... +.+.+....++.++++++
T Consensus 145 ~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 224 (663)
T 1ry2_A 145 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 224 (663)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred EcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999987643 344555556677788887
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHH-HHhh
Q 004977 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~ 310 (721)
++...... ... ......+|+++...... ..+.....++|+++|+|||||||.||||++||++++..+.. ....
T Consensus 225 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 225 YRKTNNPS----VAF-HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp ECSSCCSS----CCC-CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EecCCCCc----ccc-CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 76432100 000 01123567777653321 12234457899999999999999999999999998876643 4455
Q ss_pred CCCCCCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHH
Q 004977 311 IPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ ++.++|++++++|++|+++.. .++.+|+.|+++++.+....... +..++..|+++++|+++++|++++.|.+.
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 373 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA 373 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence 6 899999999999999999984 47789999999998442211111 22344449999999999999999988642
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004977 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
... ..+...+++||.+++||+++++++.+++.+.+
T Consensus 374 ~~~---------------------------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 374 GDS---------------------------------------------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp CTT---------------------------------------------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred Ccc---------------------------------------------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence 100 00011236899999999999999999999988
Q ss_pred C---CccccccccccccccccccCC---CCCCCCccCCCcCcceEEEEecCCCCcccCCCC-CCcceEEEcc--cccccc
Q 004977 470 G---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTAG 540 (721)
Q Consensus 470 g---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~-g~~GEl~v~g--~~v~~g 540 (721)
| +++++.||+||++..++...+ ...+.+++|+|++|++++|+|+++|..++ + |+.|||+|+| |+++.|
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~---~~g~~Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN---TSHAEGVLAVKAAWPSFART 485 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE---CSSCEEEEEESSCCTTSCCE
T ss_pred CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC---CCCcceEEEEecCCCchhcc
Confidence 8 899999999999876655433 23456899999999999999954776654 4 7899999999 589999
Q ss_pred ccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC
Q 004977 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620 (721)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~ 620 (721)
||++|+.|.+.|....+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++
T Consensus 486 y~~~~~~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562 (663)
T ss_dssp ETTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred cccChHHHHHhhhcCCC--CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecC
Confidence 99999999988853235 89999999999999999999999999998 5999999999999999999999999998865
Q ss_pred ---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCcc
Q 004977 621 ---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLV 697 (721)
Q Consensus 621 ---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~ 697 (721)
+.++|+|+++++.... .. ..+..+++.++|+++++ ++|++|++|+.|++++++ | +
T Consensus 563 ~~g~~~~a~Vv~~~~~~~~-----~~----------~~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~ 620 (663)
T 1ry2_A 563 LTGQAVAAFVVLKNKSSWS-----TA----------TDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL--P----K 620 (663)
T ss_dssp TTSCCCEEEEEEC---------------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC--C----B
T ss_pred CCCeEEEEEEEEcCCCccc-----cc----------cchhHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC--C----C
Confidence 4699999988653100 00 00000123477888888 889999999999999998 6 9
Q ss_pred CcccccChHHHHHHHHHHHH
Q 004977 698 TAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 698 t~~gKi~R~~l~~~~~~~i~ 717 (721)
|++|||+|++|++.+.++++
T Consensus 621 T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 621 TRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp CTTSCBCHHHHHHSCC----
T ss_pred CCccCchHHHHHHHHcCCCC
Confidence 99999999999999877644
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.6e-79 Score=682.23 Aligned_cols=490 Identities=22% Similarity=0.308 Sum_probs=324.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++||++|+++ +++ ++||+||.++++++|++|++.|+++||+|+|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999986 333 7999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+....+......++.+..++.++....
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--- 138 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS---
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc---
Confidence 99999999999999999999999999999999999999999999999999888776666677777887777654211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004977 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.+.++...............++|+++|+|||||||.||||++||+++++.+.+....+ +++++|++
T Consensus 139 -------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 204 (509)
T 3ivr_A 139 -------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVN 204 (509)
T ss_dssp -------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEE
T ss_pred -------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEE
Confidence 1111111111222233456789999999999999999999999999999999998888 99999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004977 321 LAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++.+|++|++++...+.++..|++.++. ++..+.+. ++++++|+++++|+++..+++...
T Consensus 205 l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~------ 267 (509)
T 3ivr_A 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAA------ 267 (509)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCC------
T ss_pred EEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhccc------
Confidence 9999999999998877765555555553 33333333 999999999999999999876320
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCccccc
Q 004977 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA 476 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~ 476 (721)
....+++|.++.||++ ++.+.+...+ +++++|.
T Consensus 268 -------------------------------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 268 -------------------------------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp -------------------------------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred -------------------------------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 0012489999999988 7777777766 8999999
Q ss_pred cccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004977 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
||+||++++++.....+ ...++|+|+++++++|+| +++..+ ++|+.|||+|+|++++.|||++|+.|++.| .
T Consensus 302 YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~ 373 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRPL---PPGEVGEIVLRGPTVFKGYWNNAAATQHAF---R 373 (509)
T ss_dssp EEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCEETTCHHHHHHHT---G
T ss_pred cCccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEecCCccccccCCHHHhHHHh---h
Confidence 99999998776654432 235699999999999999 556654 588999999999999999999999999999 5
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecC--CCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcCh
Q 004977 557 RGMCWFYTGDIGQVYPDGCLEIIDRK--KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~--~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~ 631 (721)
+ |||+|||+|++|+||+|+|+||+ ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++.+
T Consensus 374 ~--g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 450 (509)
T 3ivr_A 374 N--GWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450 (509)
T ss_dssp G--GSEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred c--CCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCC
Confidence 6 89999999999999999999999 999996 69999999999999999999999999988654 4888888776
Q ss_pred HHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004977 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+... -.++|+++++ ++||.|++|+.|++++++ | +|++|||+|++|+++
T Consensus 451 ~~~~-------------------------~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKidr~~Lr~~ 498 (509)
T 3ivr_A 451 GESI-------------------------AADALAEFVA-SLIARYKKPKHVVFVEAL--P----KDAKGAIDRAAVKTA 498 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCC-------------------------CHHHHHHHHH-hhCcccCCCcEEEEecCC--C----CCCCCCccHHHHHHH
Confidence 4310 1267888888 899999999999999987 6 999999999999999
Q ss_pred HHHHH
Q 004977 712 FKDDL 716 (721)
Q Consensus 712 ~~~~i 716 (721)
+++.-
T Consensus 499 ~~~~~ 503 (509)
T 3ivr_A 499 HGQEG 503 (509)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 88653
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.5e-77 Score=669.47 Aligned_cols=494 Identities=20% Similarity=0.229 Sum_probs=409.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEE
Q 004977 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-Gv~~gd~V~i 160 (721)
+|+.++|+++|+++||++|+++ +++ ++||+||.++++++|++|.+. |.++|++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i 57 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILV 57 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 4799999999999999999985 333 799999999999999999885 8899999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++...... ..
T Consensus 58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~----------------- 114 (511)
T 3e7w_A 58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV----------------- 114 (511)
T ss_dssp EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC-----------------
T ss_pred EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc-----------------
Confidence 9999999999999999999999999999999999999999999999997543210 00
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004977 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.......+++++...............++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus 115 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 187 (511)
T 3e7w_A 115 ------GQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIF 187 (511)
T ss_dssp ------CCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEE
T ss_pred ------ccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceE
Confidence 00133455666655433333233445789999999999999999999999999999999988888 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004977 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++++|++|++++...+.++..|+++++.+.....+. ..++..++++++|++.++|++++.++....
T Consensus 188 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 253 (511)
T 3e7w_A 188 LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKP-----KVLFEELKKSGLNVWTSTPSFVQMCLMDPG--------- 253 (511)
T ss_dssp EECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCSEEEECHHHHHHHHTSTT---------
T ss_pred EEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhccc---------
Confidence 999999999999888899999999988543221111 122233899999999999999998764210
Q ss_pred hhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcccccccc
Q 004977 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL 479 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~ 479 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|.||+
T Consensus 254 --------------------------------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 254 --------------------------------------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp --------------------------------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred --------------------------------------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 0011235899999999999999999998887 8999999999
Q ss_pred ccccccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004977 480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
||++..++..... .....++|+|+|+++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++.|..
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred chheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 9998876644321 23446899999999999999 566654 58999999999999999999999999999953
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcCh
Q 004977 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~ 631 (721)
.+|.+||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 372 -~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 448 (511)
T 3e7w_A 372 -HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEE 448 (511)
T ss_dssp -SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECC
T ss_pred -CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecc
Confidence 233358999999999 59999999999999998 6999999999999999999999999998755 36899999875
Q ss_pred HHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004977 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+.. .+ ...+.++|+++++ ++||.|++|+.+++++++ | +|++|||+|++|++.
T Consensus 449 ~~~----------~~-----------~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~l--P----~t~~GKi~R~~L~~~ 500 (511)
T 3e7w_A 449 HEF----------EK-----------EFQLTSAIKKELA-ASLPAYMIPRKFIYQDHI--Q----MTANGKIDRKRIGEE 500 (511)
T ss_dssp CCC----------SS-----------HHHHHHHHHHHHH-HHSCGGGSCSEEEECSCC--C----BCTTSCBCHHHHHHH
T ss_pred ccc----------cc-----------hhhHHHHHHHHHH-hhCchhhCCeeEEEeccC--C----CCCCcCccHHHHHhH
Confidence 320 00 1233477888888 899999999999999998 6 999999999999999
Q ss_pred HHHH
Q 004977 712 FKDD 715 (721)
Q Consensus 712 ~~~~ 715 (721)
+++.
T Consensus 501 ~~~~ 504 (511)
T 3e7w_A 501 VLVR 504 (511)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8764
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-77 Score=671.30 Aligned_cols=495 Identities=20% Similarity=0.239 Sum_probs=401.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004977 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (721)
+|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|.+.|+++||+|+|+
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~ 57 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW------------RD-----------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVY 57 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEe------------CC-----------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4799999999999999999986 33 369999999999999999999999999999999
Q ss_pred ccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCccC
Q 004977 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++...... ..+ ..++.
T Consensus 58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~--~~~~~---------- 119 (512)
T 3fce_A 58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP--VRIVS---------- 119 (512)
T ss_dssp ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS--SEEEE----------
T ss_pred eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc--cceec----------
Confidence 999999999999999999999999999999999999999999999998543210 000 00100
Q ss_pred CccCCCCCceEeeHHHHHhcCC-CCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004977 242 GVSGGISNWTVSSFSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
...+.++..... ..+.+.....++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus 120 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~ 188 (512)
T 3fce_A 120 ----------EDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVF 188 (512)
T ss_dssp ----------THHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEE
T ss_pred ----------hhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEE
Confidence 011222221111 112223456789999999999999999999999999999999988888 99999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004977 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++++|++|++++..++.+++.|+++++.+.....+. ..++..++++++|++.++|++++.++....
T Consensus 189 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 254 (512)
T 3fce_A 189 LNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEAS--------- 254 (512)
T ss_dssp EECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTT---------
T ss_pred EEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhcc---------
Confidence 999999999999888899999999998544222221 122333899999999999999988754210
Q ss_pred hhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcccccccc
Q 004977 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL 479 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~ 479 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|.||+
T Consensus 255 --------------------------------------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 296 (512)
T 3fce_A 255 --------------------------------------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296 (512)
T ss_dssp --------------------------------------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred --------------------------------------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCccc
Confidence 0111235899999999999999999998887 8999999999
Q ss_pred ccccccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004977 480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
||++..++..... .....++|+|+++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++.|..
T Consensus 297 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 372 (512)
T 3fce_A 297 TEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIA---PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTM 372 (512)
T ss_dssp GGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBC---CTTSCEEEEEESTTSCSCBTTCHHHHHHHEEE
T ss_pred ChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCC---CCCCeEEEEEeccccChhhcCCchhhhhcccc
Confidence 9999876654332 22457899999999999999 667654 48899999999999999999999999999842
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcCh
Q 004977 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~ 631 (721)
.+++|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++|+|++.+
T Consensus 373 -~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 449 (512)
T 3fce_A 373 -IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGE 449 (512)
T ss_dssp -ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred -CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCC
Confidence 234489999999999 79999999999999998 69999999999999999999999999876553 5899999875
Q ss_pred HHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004977 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+.. .+ ...+.++|+++++ ++||.|++|+.+++++++ | +|++|||+|++|++.
T Consensus 450 ~~~----------~~-----------~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~l--P----~t~~GKi~R~~L~~~ 501 (512)
T 3fce_A 450 HSF----------EK-----------EFKLTSAIKKELN-ERLPNYMIPRKFMYQSSI--P----MTPNGKVDRKKLLSE 501 (512)
T ss_dssp CCC----------SS-----------HHHHHHHHHHHHH-TTSCGGGSCSEEEECSCC--C----BCTTSSBCHHHHHHH
T ss_pred ccc----------cc-----------hhhhHHHHHHHHH-hhCchhcCCeEEEEeccc--C----CCCCcChHHHHHHhh
Confidence 320 00 0123467889998 999999999999999998 6 999999999999999
Q ss_pred HHHH
Q 004977 712 FKDD 715 (721)
Q Consensus 712 ~~~~ 715 (721)
+++.
T Consensus 502 ~~~~ 505 (512)
T 3fce_A 502 VTAL 505 (512)
T ss_dssp HHC-
T ss_pred hhhc
Confidence 8764
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.2e-77 Score=679.24 Aligned_cols=504 Identities=17% Similarity=0.236 Sum_probs=415.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004977 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~ 157 (721)
++...|++++|+++++ ||++|+++ ++ +.+||+||+++++++|++|++.|+++||+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 77 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGET 77 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3456899999999988 99999985 33 37999999999999999999999999999
Q ss_pred EEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhhcCCCccEEEEe
Q 004977 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYF 232 (721)
Q Consensus 158 V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 232 (721)
|+|+++|++++++++|||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...
T Consensus 78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (617)
T 3rg2_A 78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157 (617)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999987654 3344444555666666655
Q ss_pred cCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCC
Q 004977 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 312 (721)
+.... ..+.+....... ........++|+|+|+|||||||.||||+++|+++++.+......+
T Consensus 158 ~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~- 220 (617)
T 3rg2_A 158 NDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220 (617)
T ss_dssp TCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-
T ss_pred ccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-
Confidence 43221 123333332221 2223455689999999999999999999999999999999988888
Q ss_pred CCCCCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHH
Q 004977 313 NPGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
++.++|++++++|++|.+++.. ++.+++.|+++++.+.... ..+...++++++|++.++|+++..+.+..
T Consensus 221 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSA--------TLCFPLIEKHQVNVTALVPPAVSLWLQAL 292 (617)
T ss_dssp TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCH--------HHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCH--------HHHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence 8999999999999999999864 7888999999998543211 11222389999999999999999987643
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004977 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
..... ....++||.+++||+++++++.+.+...+|
T Consensus 293 ~~~~~---------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 327 (617)
T 3rg2_A 293 IEGES---------------------------------------------RAQLASLKLLQVGGARLSATLAARIPAEIG 327 (617)
T ss_dssp HTTCC---------------------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred hcccc---------------------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhC
Confidence 21100 001258999999999999999999999889
Q ss_pred CccccccccccccccccccCCCC-CCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004977 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
++++|.||+||++..++...... ....++|+|+ ++++++|+| +++..+ ++|+.|||+|+|+++++||+|+|+.|
T Consensus 328 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~t 403 (617)
T 3rg2_A 328 CQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL---PQGEVGRLMTRGPYTFRGYYKSPQHN 403 (617)
T ss_dssp SEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECSSSCSCCTTCHHHH
T ss_pred CcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCCC---CCCCceEEEecCccccchhcCChhhh
Confidence 99999999999986655332211 1236889997 788999999 667654 58999999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004977 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a 625 (721)
+++|. .+ +||+|||+|++++||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|
T Consensus 404 ~~~f~--~~--~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 478 (617)
T 3rg2_A 404 ASAFD--AN--GFYCSGDLISIDPEGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCA 478 (617)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhccC--CC--CceecCceEEEcCCceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEE
Confidence 99997 66 89999999999999999999999999998 5999999999999999999999999987654 46889
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccCh
Q 004977 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.+.. + .+++++++++.+||.||+|+.+++++++ | +|++|||||
T Consensus 479 ~vv~~~~~----------~-----------------~~~l~~~l~~~~lp~~~vP~~~~~v~~l--P----~t~~GKidR 525 (617)
T 3rg2_A 479 YLVVKEPL----------R-----------------AVQVRRFLREQGIAEFKLPDRVECVDSL--P----LTAVGKVDK 525 (617)
T ss_dssp EEEESSCC----------C-----------------HHHHHHHHHTTTCCGGGSCSEEEECSCC--C----BCTTSSBCH
T ss_pred EEEeCCCC----------C-----------------HHHHHHHHHhCCCccccCCcEEEEeccc--C----CCCCCCCcH
Confidence 98876421 0 2567888883379999999999999998 6 999999999
Q ss_pred HHHHHHHHHHHHh
Q 004977 706 EQLKAKFKDDLQM 718 (721)
Q Consensus 706 ~~l~~~~~~~i~~ 718 (721)
++|++.+.+....
T Consensus 526 ~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 526 KQLRQWLASRASA 538 (617)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccc
Confidence 9999998876543
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2e-78 Score=686.82 Aligned_cols=485 Identities=22% Similarity=0.259 Sum_probs=312.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004977 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 158 (721)
+...|++++|+++++++||++|+++ ++ +.+||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH------------EA-----------DELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC------------CC-----------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 33 369999999999999999999999999999
Q ss_pred EEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCC
Q 004977 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++...... ++....++..+...
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~-- 199 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA-- 199 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc--
Confidence 999999999999999999999999999999999999999999999999999765332 22222222211100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCc
Q 004977 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
.............++|+|+|+|||||||.||||++||+++.+.+.. ...+ .++++|
T Consensus 200 ----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 255 (570)
T 4gr5_A 200 ----------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE 255 (570)
T ss_dssp --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred ----------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence 0001111224457899999999999999999999999999876554 3334 788999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004977 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++++|++|..+...++.+++.|+++++.+.... + +..+...++++++|++.++|++++.|.+....
T Consensus 256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------ 323 (570)
T 4gr5_A 256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------ 323 (570)
T ss_dssp EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence 99999999998777778889999999988543211 1 11233339999999999999999998753110
Q ss_pred chhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcccccc
Q 004977 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~Y 477 (721)
..++||.+++||+++++++.+.+.+.+ +++++|+|
T Consensus 324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 125899999999999999877777665 89999999
Q ss_pred ccccccccccccCCC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004977 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
|+||++++++..... .....++|+|+++++++|+| +++..+ ++|+.|||+|+|++++.|||++|+.|+++|.
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTAERFV 435 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence 999998876654321 22346799999999999999 666654 4899999999999999999999999999996
Q ss_pred cC----CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEE
Q 004977 554 VD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVAL 626 (721)
Q Consensus 554 ~~----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~ 626 (721)
.+ .++.|||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+
T Consensus 436 ~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~ 514 (570)
T 4gr5_A 436 ADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAY 514 (570)
T ss_dssp ECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------
T ss_pred cCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEE
Confidence 32 134589999999999999999999999999997 6999999999999999999999999998765 358899
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChH
Q 004977 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.+... ....++|+++++ ++|+.|++|+.+++++++ | +|++|||+|+
T Consensus 515 vv~~~~~~------------------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~GKi~R~ 563 (570)
T 4gr5_A 515 VVAERADA------------------------PPDAAELRRHVA-EALPAYMVPVECVPVDEL--P----RTPNGKLDRR 563 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCCC------------------------CcCHHHHHHHHH-hhCccccCCcEEEEcccC--C----CCCCcCcchH
Confidence 88765321 011367888998 899999999999999998 6 9999999999
Q ss_pred HHHHH
Q 004977 707 QLKAK 711 (721)
Q Consensus 707 ~l~~~ 711 (721)
+|++.
T Consensus 564 ~L~~~ 568 (570)
T 4gr5_A 564 ALTGS 568 (570)
T ss_dssp -----
T ss_pred hhhcc
Confidence 99864
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.9e-77 Score=669.12 Aligned_cols=501 Identities=22% Similarity=0.277 Sum_probs=397.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
.+++.++|+++++ +|+++|+++ ++. ++||+||.++++++|++|+++|+++||+|+|
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4569999999999 999999985 333 6999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCc-cEEEEecCCCCCc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~ 239 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999988877666655544444 455554432110
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHH-HHHHHHHHhhCCCCCCCc
Q 004977 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~d 318 (721)
......++++...... ........++|+++|+|||||||.||||++||+++ .+........+ ++.++|
T Consensus 158 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d 226 (529)
T 2v7b_A 158 ---------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND 226 (529)
T ss_dssp -----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred ---------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence 0112346666543221 12234457899999999999999999999999999 55554444445 788999
Q ss_pred EEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004977 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++++.+|++|.+++.. .+.++..|+++++.+... + ...++..++++++|+++++|+++..+++...
T Consensus 227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------ 293 (529)
T 2v7b_A 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERP--T-----ADAIFARLVEHRPTVFYGVPTLYANMLVSPN------ 293 (529)
T ss_dssp EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCC--C-----HHHHHHHHHHSCCSEEEECHHHHHHHHTCTT------
T ss_pred EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCC--C-----HHHHHHHHHHhCCEEEEecHHHHHHHHhCcc------
Confidence 9999999999999876 567899999998753110 1 1122333899999999999999998864210
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcccccc
Q 004977 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~Y 477 (721)
. ......++|.+++||+++++++.+.+.+.+|++++|+|
T Consensus 294 --~---------------------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~Y 332 (529)
T 2v7b_A 294 --L---------------------------------------PARADVAIRICTSAGEALPREIGERFTAHFGCEILDGI 332 (529)
T ss_dssp --C---------------------------------------CCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEE
T ss_pred --c---------------------------------------ccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeE
Confidence 0 00001379999999999999999999998999999999
Q ss_pred ccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004977 478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 478 G~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
|+||++.+++.........+++|+|+|+++++|+| +++..+ ++|+.|||+|+|++++.|||++|+.|.+.| .+
T Consensus 333 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~ 405 (529)
T 2v7b_A 333 GSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAV---PDGEVGDLYIKGPSAAVMYWNNREKSRATF---LG 405 (529)
T ss_dssp ECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBC---CTTSCEEEEEECTTCCCCBTTCHHHHHHHE---ET
T ss_pred chhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCC---CCCCccEEEEecCCcccccCCChHHHHHhh---hc
Confidence 99999766555544445668999999999999999 667654 488999999999999999999999999999 56
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCC--CceEEEEEEcChHHHH
Q 004977 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALE 635 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~~a~vv~~~~~~~ 635 (721)
|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++... ...++|+|++.++.
T Consensus 406 --~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~-- 480 (529)
T 2v7b_A 406 --EWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF-- 480 (529)
T ss_dssp --TEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC--
T ss_pred --CCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC--
Confidence 89999999999999999999999999997 699999999999999999999999999832 23588999876531
Q ss_pred HHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004977 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.. . +...++|+++++ ++|+.|++|+.|++++++ | +|++||++|++|++
T Consensus 481 --------~~--------~----~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 481 --------AP--------S----EILAEELKAFVK-DRLAPHKYPRDIVFVDDL--P----KTATGKIQRFKLRE 528 (529)
T ss_dssp --------CC--------C----HHHHHHHHHHHH-TTSCTTTSCSEEEEESCC--C----BCTTSCBCHHHHHC
T ss_pred --------Cc--------c----hhHHHHHHHHHH-hhcchhhCCeEEEEeccC--C----CCCccchhHHhHhh
Confidence 00 0 112357888998 999999999999999987 6 99999999999985
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.9e-77 Score=682.13 Aligned_cols=480 Identities=17% Similarity=0.157 Sum_probs=383.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004977 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 158 (721)
....|++++|+++|+++||++|+++ .+ +.+||+||.++++++|++|++.|+++||+|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V 80 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 22 369999999999999999999999999999
Q ss_pred EEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCC
Q 004977 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||++|.++.+++.++++++++++++++....... ..+..+
T Consensus 81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~--------- 144 (620)
T 4dg8_A 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV--------- 144 (620)
T ss_dssp EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE---------
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee---------
Confidence 9999999999999999999999999999999999999999999999999765432211 011100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCc
Q 004977 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
.+.... ............++|+|+|+|||||||.||||+++|+++.+.+.. ...+ .+.++|
T Consensus 145 ---------------~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 205 (620)
T 4dg8_A 145 ---------------PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQM 205 (620)
T ss_dssp ---------------EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTC
T ss_pred ---------------eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCC
Confidence 010000 001111123446899999999999999999999999999887665 4445 789999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004977 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|++++..++.+|+.|+++++.+...+ + +..+...++++++|+++++|++++.+.+...
T Consensus 206 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------- 272 (620)
T 4dg8_A 206 RFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPL-D-----PGVLRQLIGERGADSAWLTASLFNTLVDLDP------- 272 (620)
T ss_dssp EEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSC-C-----HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------
T ss_pred EEEEECccCHHHHHHHHHHHHhcCCEEEeCccccC-C-----HHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------
Confidence 99999999999999989999999999998532211 1 1223333899999999999999998865200
Q ss_pred chhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh-hCCcccccc
Q 004977 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~-~g~~l~~~Y 477 (721)
...++||.+++||++++++..+.+... .+++++|.|
T Consensus 273 -------------------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 309 (620)
T 4dg8_A 273 -------------------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGY 309 (620)
T ss_dssp -------------------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeE
Confidence 012589999999999998887665544 489999999
Q ss_pred ccccccccccccCCC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004977 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
|+||++.+++..... .....++|+|++|++++|+| +++..+ +++|+.|||||+|+++++||||+|+.|+++|.
T Consensus 310 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~ 386 (620)
T 4dg8_A 310 GPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTRASFV 386 (620)
T ss_dssp CCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHHHHEE
T ss_pred chhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhhhhhc
Confidence 999999877654322 22447899999999999999 555542 35789999999999999999999999999997
Q ss_pred cCC-CCc--ceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc--eEEEEEE
Q 004977 554 VDE-RGM--CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVV 628 (721)
Q Consensus 554 ~~~-~g~--gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~--~~~a~vv 628 (721)
.++ +|. +||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++.. .++++++
T Consensus 387 ~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~ 465 (620)
T 4dg8_A 387 ELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT 465 (620)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe
Confidence 321 122 79999999999999999999999999998 59999999999999999999999999876553 4566665
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHH
Q 004977 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l 708 (721)
...+ .+++.++ ++||.||+|+.+++++++ | +|++|||||++|
T Consensus 466 ~~~~-------------------------------~~~~~l~-~~Lp~y~~P~~~~~v~~l--P----~t~~GKidR~~L 507 (620)
T 4dg8_A 466 GKAD-------------------------------ASPQALL-RQLPTWQRPHACVRVEAL--P----LTAHGKLDRAAL 507 (620)
T ss_dssp ECTT-------------------------------CCCHHHH-HHSCGGGSCSEEEECSSC--C----CC----CCHHHH
T ss_pred cChH-------------------------------HHHHHHH-HhChhhcCCcEEEEECcC--C----CCcccCHhHHHH
Confidence 4321 2223344 679999999999999998 6 999999999999
Q ss_pred HHHHHH
Q 004977 709 KAKFKD 714 (721)
Q Consensus 709 ~~~~~~ 714 (721)
++.|.+
T Consensus 508 ~~~~~~ 513 (620)
T 4dg8_A 508 LRRLEE 513 (620)
T ss_dssp HHHTCS
T ss_pred hhcccc
Confidence 987754
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.8e-77 Score=668.72 Aligned_cols=498 Identities=20% Similarity=0.216 Sum_probs=398.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++|+++|+.+ .++ ++||+||.++++++|++|.+.|+++||+|+|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 343 7999999999999999999999999999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCcc
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+....+.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~----------------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE----------------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------------------
Confidence 999999999999999999999999999999999999999999999999876432110
Q ss_pred CCccCCCCCceEeeHHHHHhcC--CCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhh--CCCCCC
Q 004977 241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR 316 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~ 316 (721)
......+.++.... ...........++|+++|+|||||||.||||++||+++.+.+.+.... + .+.+
T Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~ 187 (521)
T 3l8c_A 117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK 187 (521)
T ss_dssp --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence 12233333332211 111122345678999999999999999999999999999988877665 5 7789
Q ss_pred CcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHh
Q 004977 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 317 ~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
++++++..|++|.+++...+.++..|+++++.+.....+. ..+...+.++++|++.++|+++..+.....
T Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----- 257 (521)
T 3l8c_A 188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDD----- 257 (521)
T ss_dssp SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----
T ss_pred CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----
Confidence 9999999999999998888889999999988544322222 122333889999999999999987754210
Q ss_pred hcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcccc
Q 004977 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~ 475 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|
T Consensus 258 ------------------------------------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~ 295 (521)
T 3l8c_A 258 ------------------------------------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295 (521)
T ss_dssp ------------------------------------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred ------------------------------------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence 0011225899999999999999998888777 899999
Q ss_pred ccccccccccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004977 476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
.||+||++..++..... ....+++|+|+|+++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKEL---SSGEQGEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBC---CTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCC---CCCCceEEEecccccChhhcCCchHhhc
Confidence 99999998876654322 22457899999999999999 666654 4889999999999999999999999999
Q ss_pred ccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC----ceEEEE
Q 004977 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH----NYCVAL 626 (721)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~----~~~~a~ 626 (721)
.|.. .++.|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+
T Consensus 372 ~f~~-~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~ 449 (521)
T 3l8c_A 372 AFFT-FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAY 449 (521)
T ss_dssp HEEE-ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEE
T ss_pred cCcC-CCCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEE
Confidence 9842 134489999999999999999999999999998 5999999999999999999999999987643 358999
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChH
Q 004977 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.++... ..+ . ...+.++|+++++ ++||.|++|+.|++++++ | +|++|||+|+
T Consensus 450 vv~~~~~~~--------~~~-------~---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~GKidr~ 504 (521)
T 3l8c_A 450 IVVKDGVKE--------RFD-------R---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL--P----LTPNGKIDIK 504 (521)
T ss_dssp EEECTTSGG--------GCS-------S---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC--C----BCTTSSBCHH
T ss_pred EEecCcccc--------ccc-------c---chhhHHHHHHHHH-hhCccccCCeEEEEeccc--C----CCCCcCccHH
Confidence 998764210 000 0 0123578889998 999999999999999998 6 9999999999
Q ss_pred HHHHHHHHHH
Q 004977 707 QLKAKFKDDL 716 (721)
Q Consensus 707 ~l~~~~~~~i 716 (721)
+|+++++++-
T Consensus 505 ~L~~~~~~~~ 514 (521)
T 3l8c_A 505 TLINEVNNRE 514 (521)
T ss_dssp HHHHHTC---
T ss_pred HHhhhhhcCC
Confidence 9999987653
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.6e-77 Score=718.84 Aligned_cols=519 Identities=23% Similarity=0.304 Sum_probs=336.5
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCC
Q 004977 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (721)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~ 154 (721)
..+.+...|++++|+++++++||++|+++.. +|+ ++||+||.++++++|++|+++|+++
T Consensus 54 ~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~ 112 (979)
T 3tsy_A 54 DIYIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQ 112 (979)
T ss_dssp CCCCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445667899999999999999999998631 233 7999999999999999999999999
Q ss_pred CCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecC
Q 004977 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (721)
Q Consensus 155 gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 234 (721)
||+|+|+++|+++|++++|||+++|+++||++|.++++++.+++++++++++|++....+.+..+.... .+ .++.++.
T Consensus 113 gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~ 190 (979)
T 3tsy_A 113 NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDD 190 (979)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCC
T ss_pred cCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999988776665554332 22 3444443
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCC--CCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHh---
Q 004977 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT--- 309 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--- 309 (721)
..... ......+++++...... ...+.....++|+++|+|||||||.||||++||+++++.+.....
T Consensus 191 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 262 (979)
T 3tsy_A 191 NESVP--------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262 (979)
T ss_dssp CTTSC--------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS
T ss_pred ccccc--------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc
Confidence 21100 01123455554432221 112234567899999999999999999999999999998877654
Q ss_pred -hCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHH
Q 004977 310 -LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (721)
Q Consensus 310 -~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 387 (721)
.+ .+.++|++++.+|++|.+++.. ++.++..|+++++.+.... ..+...++++++|++.++|+++..+.
T Consensus 263 ~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~ 333 (979)
T 3tsy_A 263 PNL-YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEI--------NLLLELIQRCKVTVAPMVPPIVLAIA 333 (979)
T ss_dssp CSS-CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCH--------HHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred ccc-cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCH--------HHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence 23 6789999999999999999865 6778999999998543221 11223399999999999999999887
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHH
Q 004977 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (721)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~ 467 (721)
+.... .....++||.+++||+++++++.+++.+
T Consensus 334 ~~~~~-----------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~ 366 (979)
T 3tsy_A 334 KSSET-----------------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVNA 366 (979)
T ss_dssp HCGGG-----------------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHHH
T ss_pred hCccc-----------------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHH
Confidence 53110 1112368999999999999999999988
Q ss_pred hh-CCccccccccccccccccccC-----CCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccc
Q 004977 468 CM-GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541 (721)
Q Consensus 468 ~~-g~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY 541 (721)
.+ +++++|.||+||++.+++... ......+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.||
T Consensus 367 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~i~g~~v~~GY 443 (979)
T 3tsy_A 367 KFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL---SRNQPGEICIRGHQIMKGY 443 (979)
T ss_dssp HCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC---CTTCCEEEEEESTTSCSEE
T ss_pred HCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC---CCCCccEEEEECCCccccc
Confidence 87 899999999999997655431 22335589999999999999997767664 4889999999999999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC-
Q 004977 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
|++|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 444 ~~~p~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~ 518 (979)
T 3tsy_A 444 LNNPAATAETID--KD--GWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518 (979)
T ss_dssp TTCHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEESCC-------------------------------------
T ss_pred cCChhhhhhhcc--CC--CcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccC
Confidence 999999999996 56 89999999999999999999999999998 5999999999999999999999999998765
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccC
Q 004977 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++|+|++.++.. ...++|+++++ ++||.|++|+.+++++++ | +|
T Consensus 519 ~g~~~~a~vv~~~~~~-------------------------~~~~~l~~~l~-~~l~~~~~p~~i~~v~~l--P----~t 566 (979)
T 3tsy_A 519 AGEVPVAFVVKSKDSE-------------------------LSEDDVKQFVS-KQVVFYKRINKVFFTESI--P----KA 566 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEEECCCCC-------------------------CCHHHHHHHHH-HhcccccCCeEEEEeCCc--C----cC
Confidence 35899998765431 01267888888 899999999999999988 6 99
Q ss_pred cccccChHHHHHHHHHHHHhhh
Q 004977 699 AALKIKREQLKAKFKDDLQMLY 720 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~~~Y 720 (721)
++|||+|++|+++|.+.+...|
T Consensus 567 ~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 567 PSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp ----------------------
T ss_pred CCCCeeHHHHHHHHHhhcCCcc
Confidence 9999999999999998887665
No 25
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-76 Score=730.29 Aligned_cols=517 Identities=20% Similarity=0.264 Sum_probs=422.3
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcccee
Q 004977 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|..+ +.++++++..+++.+...++ ....+.+ ..|++++|+++++++||++|+++ +++
T Consensus 432 p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~------------~~~---- 488 (1304)
T 2vsq_A 432 PDQP---VSTINLVDDREREFLLTGLN---PPAQAHE-TKPLTYWFKEAVNANPDAPALTY------------SGQ---- 488 (1304)
T ss_dssp TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCC-CCCHHHHHHHHHHHCTTSEEEES------------SSC----
T ss_pred cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCC-CCCHHHHHHHHHHhCCCCeEEEE------------CCe----
Confidence 7777 88899999988887765555 2223333 37999999999999999999985 232
Q ss_pred ccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004977 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++
T Consensus 489 -------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~ 561 (1304)
T 2vsq_A 489 -------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSA 561 (1304)
T ss_dssp -------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHT
T ss_pred -------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004977 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++.+....+. .++....++.+++.. .. ............++++|||+|
T Consensus 562 ~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~~~~~ayiiy 614 (1304)
T 2vsq_A 562 AACLLTHQEMKEQAA----ELPYTGTTLFIDDQT--------------------RF---EEQASDPATAIDPNDPAYIMY 614 (1304)
T ss_dssp CCEEEECSTTCTTST----TCCCCSEEEESSCGG--------------------GG---GSCSSCCCCCCCTTSEEEEEE
T ss_pred CCEEEECcchhhhhh----ccCCCCcEEEecccc--------------------cc---ccccCCCCCCCCCCCeEEEEe
Confidence 999999976543321 122222333322110 00 001111223457899999999
Q ss_pred ccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004977 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++.+. .+....+ .++++|+++++.|++|+.+.+.++.+|+.|+++++.+.....+. .
T Consensus 615 TSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~ 687 (1304)
T 2vsq_A 615 TSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDT-----E 687 (1304)
T ss_dssp ECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCH-----H
T ss_pred CCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCH-----H
Confidence 999999999999999999876 3334445 78899999999999999998889999999999999665443332 2
Q ss_pred CccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHH
Q 004977 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...+.++++|+++++|++++.+.+.....
T Consensus 688 ~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~------------------------------------------------- 718 (1304)
T 2vsq_A 688 RLTDLILQENVNVMFATTALFNLLTDAGEDW------------------------------------------------- 718 (1304)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-------------------------------------------------
T ss_pred HHHHHHHHcCCcEEEccHHHHHHHHhhchhc-------------------------------------------------
Confidence 2333489999999999999999886521000
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhh-CCccccccccccccccccccCCC----CCCCCccCCCcCcceEEEEecCCCC
Q 004977 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGG 517 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~ 517 (721)
.++||.+++||+++++++.+.+.+.+ +++++|+||+||++++++..... .....++|+|++|++++|+| +++.
T Consensus 719 -~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~ 796 (1304)
T 2vsq_A 719 -MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQ 796 (1304)
T ss_dssp -HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSC
T ss_pred -CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcC
Confidence 02799999999999999988777766 47899999999999877655432 22347899999999999999 5665
Q ss_pred cccCCCCCCcceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeee
Q 004977 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595 (721)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~ 595 (721)
. +++|+.|||||+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+||+||++ |+||+
T Consensus 797 ~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~rie 872 (1304)
T 2vsq_A 797 L---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIR-GHRIE 872 (1304)
T ss_dssp B---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEET-TEEEE
T ss_pred C---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEEC-CEeeC
Confidence 5 45899999999999999999999999999997432 355899999999999999999999999999995 99999
Q ss_pred chHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHC
Q 004977 596 LGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA 672 (721)
Q Consensus 596 p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (721)
|.|||++|.+||+|++|+|++.++. ..++|+|++.... + .++|+++++ +
T Consensus 873 ~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~----------~-----------------~~~l~~~l~-~ 924 (1304)
T 2vsq_A 873 LEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL----------S-----------------AEDVKAHLK-K 924 (1304)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------C-----------------HHHHHHHHH-H
T ss_pred HHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------C-----------------HHHHHHHHH-H
Confidence 9999999999999999999997654 4699999976421 0 267888888 8
Q ss_pred CCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004977 673 KLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 673 ~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
+||.||+|+.|++++++ | +|++|||||++|.+.+
T Consensus 925 ~Lp~ymvP~~~~~l~~l--P----~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 925 QLPAYMVPQTFTFLDEL--P----LTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp HSCGGGSCSEEEEESCC--C----CCSSCSSCCSCCCCCC
T ss_pred hChHhhhccEEEEeccc--C----CCCCcccCHhhcCCcc
Confidence 99999999999999998 6 9999999999986543
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.7e-76 Score=659.99 Aligned_cols=488 Identities=20% Similarity=0.257 Sum_probs=371.2
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004977 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~ 162 (721)
||.++|+++++++||++|+++ +++ ++||+||.++++++|++|++. +||+|+|++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 677899999999999999985 333 699999999999999999987 899999999
Q ss_pred cCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCCccCC
Q 004977 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (721)
+|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++........... ....+..+.........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 130 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL---- 130 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc----
Confidence 9999999999999999999999999999999999999999999999977644322111 11111111110000000
Q ss_pred ccCCCCCceEe-eHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004977 243 VSGGISNWTVS-SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.......... ..+.................++|+++|+|||||||.||||++||+++.+.+......+ ++.++|+++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l 208 (501)
T 3ipl_A 131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL 208 (501)
T ss_dssp --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence 0000000000 0011111000001112345789999999999999999999999999999999988888 999999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004977 322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+.+|++|++++...+.+++.|+++++.+ +..+.+. ++++++|+++++|++++.|.+....
T Consensus 209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------ 271 (501)
T 3ipl_A 209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------ 271 (501)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence 9999999999988888999999999854 3333333 9999999999999999998763100
Q ss_pred chhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCccccccc
Q 004977 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
...+||.+++||+++++++.+.+.+ +|++++|.||
T Consensus 272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG 306 (501)
T 3ipl_A 272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG 306 (501)
T ss_dssp --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence 0027999999999999999998887 5999999999
Q ss_pred cccccccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004977 479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
+||++..++..... ....+++|+|+++++++|+|++ +++.|||+|+|++++.|||++|+.|.+ | .
T Consensus 307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~ 373 (501)
T 3ipl_A 307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E 373 (501)
T ss_dssp EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence 99998765543322 2355799999999999999843 346799999999999999999999988 6 5
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHH
Q 004977 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~~~ 633 (721)
+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++..+.
T Consensus 374 ~--g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~ 450 (501)
T 3ipl_A 374 N--GYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI 450 (501)
T ss_dssp T--TEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred C--CceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC
Confidence 6 89999999999999999999999999996 69999999999999999999999999987654 578888864321
Q ss_pred HHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004977 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
+ .++|+++++ ++||.|++|+.|++++++ | +|++|||+|++|++.++
T Consensus 451 ----------~-----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 451 ----------S-----------------KAQLIAYLS-KHLAKYKVPKHFEKVDTL--P----YTSTGKLQRNKLYREGH 496 (501)
T ss_dssp ----------C-----------------HHHHHHHHH-HHSCGGGSCSEEEECSSC--C---------------------
T ss_pred ----------C-----------------HHHHHHHHH-hhCccccCCCEEEEeccc--C----CCCCCCEeHHHHhhccc
Confidence 1 267888888 889999999999999998 6 99999999999999887
Q ss_pred HH
Q 004977 714 DD 715 (721)
Q Consensus 714 ~~ 715 (721)
++
T Consensus 497 ~~ 498 (501)
T 3ipl_A 497 HH 498 (501)
T ss_dssp --
T ss_pred cc
Confidence 64
No 27
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.2e-76 Score=659.71 Aligned_cols=476 Identities=24% Similarity=0.331 Sum_probs=374.6
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004977 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd-~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 158 (721)
.+.|+.++|.++++++|+ ++|+++ ++ +++||+||.++++++|++|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~-----------~~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GE-----------RSLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TT-----------EEEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CC-----------eeeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 367899999999999997 999986 33 37999999999999999874 48899
Q ss_pred EEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCCCCC
Q 004977 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++.+... ......+..+.. +..
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~-~~~--- 142 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDV-DVR--- 142 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEEC-CTT---
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccc-ccc---
Confidence 99999999999999999999999999999999999999999999999999865310 111122222111 100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCc
Q 004977 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
...........++|+++|+|||||||.||||++||+++.+.+......+ ++.++|
T Consensus 143 ------------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 197 (505)
T 3nyq_A 143 ------------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGED 197 (505)
T ss_dssp ------------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTC
T ss_pred ------------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCc
Confidence 0111122445789999999999999999999999999999999988888 899999
Q ss_pred EEEeccChHHHHHHHH-HHHHHHhcceEeeCcc---ccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHH
Q 004977 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
++++.+|++|..++.. ++.++..|+++++.+. ..+.+. + ++++|+++++|+++..+.+......
T Consensus 198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~ 265 (505)
T 3nyq_A 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADP 265 (505)
T ss_dssp EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCH
T ss_pred EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCc
Confidence 9999999999999865 7888999999988432 222222 5 6799999999999999876321100
Q ss_pred HhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCccc
Q 004977 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~ 474 (721)
.. ....+++|.+++||+++++++.+.+...+|++++
T Consensus 266 ~~--------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~ 301 (505)
T 3nyq_A 266 EL--------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVI 301 (505)
T ss_dssp HH--------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCE
T ss_pred hh--------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeee
Confidence 00 0011378999999999999999999998999999
Q ss_pred cccccccccccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004977 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
|.||+||++..++.........+++|+|+|+++++|+| +++..++.++.|+.|||+|+|++++.|||++|+.|+++|.
T Consensus 302 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~- 379 (505)
T 3nyq_A 302 ERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT- 379 (505)
T ss_dssp EEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC-
T ss_pred cccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc-
Confidence 99999999987776665566678999999999999999 6676665445589999999999999999999999999996
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecC-CCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcC
Q 004977 555 DERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~-~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~ 630 (721)
.+ |||+|||+|++|+||+|+|+||+ ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.
T Consensus 380 -~~--g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~ 455 (505)
T 3nyq_A 380 -ED--GFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPA 455 (505)
T ss_dssp -TT--SCEEEEEEEEECTTSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred -CC--CCCccCCeEEECCCccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEEC
Confidence 56 89999999999999999999998 599997 5999999999999999999999999998765 3699999987
Q ss_pred hHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004977 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
++. ...+ .++|+++++ ++||.||+|+.|++++++ | +|++|||+|++|++
T Consensus 456 ~~~---------~~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 456 DPA---------APPA---------------LGTLADHVA-ARLAPHKRPRVVRYLDAV--P----RNDMGKIMKRALNR 504 (505)
T ss_dssp STT---------SCCC---------------HHHHHHHHH-HHTCGGGSCSEEEECSCC--C----C-------------
T ss_pred CCC---------CCCC---------------HHHHHHHHH-hhCCCCcCccEEEEECCC--C----CCCCcCeeHHhhcc
Confidence 521 0000 267888888 899999999999999998 6 99999999999986
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-74 Score=656.13 Aligned_cols=517 Identities=21% Similarity=0.231 Sum_probs=314.3
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCC
Q 004977 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~g 155 (721)
..+....|+.++|+++|+++||++|+++.+-. .+. .....+++||+||.++++++|+.|.+.|+ +|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~g 79 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HG 79 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SS
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CC
Confidence 34456689999999999999999999874200 000 01223589999999999999999999999 79
Q ss_pred CEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCccEEEEecCC
Q 004977 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+++.....+ ..+....++...
T Consensus 80 d~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-- 152 (562)
T 3ite_A 80 RAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK-- 152 (562)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT--
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc--
Confidence 9999999999999999999999999999999999999999999999999999987654321 111111222100
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhC----
Q 004977 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---- 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---- 311 (721)
...+.+....... ........++++|+|+|||||||.||||++||+++.+.+......+
T Consensus 153 ----------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 215 (562)
T 3ite_A 153 ----------------NQSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVA 215 (562)
T ss_dssp ----------------CHHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------chhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhcccc
Confidence 0122222222211 1112345678899999999999999999999999998877654431
Q ss_pred ---CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHH
Q 004977 312 ---PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 312 ---~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
..+...+++++..|++|..++...+.++..|+++++.......+. +...++++++|++.++|++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-------~~~~i~~~~~t~~~~~P~~l~~~~~ 288 (562)
T 3ite_A 216 PKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD-------LPRTFRELGVTHAGIVPSLLDQTGL 288 (562)
T ss_dssp GGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS-------HHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred chhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH-------HHHHHHHcCCCEEEcCHHHHhhccc
Confidence 157788999999999999998888889999999988544322211 2233889999999999998776522
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004977 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
. ....++||.+++||+++++++.+.+.+.
T Consensus 289 ~---------------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 289 V---------------------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp C---------------------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred C---------------------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 0 0112589999999999999999999988
Q ss_pred hCCccccccccccccccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcc
Q 004977 469 MGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (721)
++++++|.||+||++..++.... .....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.|||++|+.
T Consensus 318 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~ 394 (562)
T 3ite_A 318 DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDA 394 (562)
T ss_dssp SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTC
T ss_pred CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCccc
Confidence 89999999999999877665443 234557999999999999999655654 45889999999999999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeechHHHHHHhcC-cccceEEEEecCCCc----e
Q 004977 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS-DYVDNIMIHADPFHN----Y 622 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~-p~V~~~~V~g~~~~~----~ 622 (721)
|...+ .+|.+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+| |.|.+++|++.+++. .
T Consensus 395 t~~~~---~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~ 470 (562)
T 3ite_A 395 KGFCD---INGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470 (562)
T ss_dssp CSEEE---ETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred ccccc---CCCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceE
Confidence 98876 565579999999999999999999999999997 69999999999999997 888899998877653 2
Q ss_pred EEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCcccccEEEeeCCCCCCCCCccC-ccc
Q 004977 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT-AAL 701 (721)
Q Consensus 623 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t-~~g 701 (721)
+++++......... +.....+-.+.+.++|+++++ ++||.||+|+.|++++++ | +| ++|
T Consensus 471 ~~~~v~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l--P----~t~~~G 530 (562)
T 3ite_A 471 LVSFVASSGAAVRG-------------ELRWINENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI--P----LRDTSA 530 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEecccccccc-------------cccccccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC--C----CCCCCC
Confidence 44444433222100 000000111234568999998 899999999999999998 6 77 999
Q ss_pred ccChHHHHHHHHHH
Q 004977 702 KIKREQLKAKFKDD 715 (721)
Q Consensus 702 Ki~R~~l~~~~~~~ 715 (721)
|++|++|+++|++.
T Consensus 531 Ki~r~~L~~~~~~~ 544 (562)
T 3ite_A 531 KTDAKALEHMFHTL 544 (562)
T ss_dssp --------------
T ss_pred cchHHHHHHHHhcc
Confidence 99999999998754
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.5e-73 Score=649.92 Aligned_cols=509 Identities=22% Similarity=0.274 Sum_probs=401.5
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCC
Q 004977 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (721)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~ 154 (721)
+..++...|+.++|+++++++|+.+++... . +..+++||+||.++++++|++|+++|+++
T Consensus 14 ~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~-------------~-------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~ 73 (576)
T 3gqw_A 14 PMRYADFPTLVDALDYAALSSAGMNFYDRR-------------C-------QLEDQLEYQTLKARAEAGAKRLLSLNLKK 73 (576)
T ss_dssp CCCCSCCSSHHHHHHHHTTSSCEEEEECTT-------------S-------CEEEEEEHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CcccCCCCcHHHHHHHHhhCCCCeEEeCCC-------------C-------CceeEEcHHHHHHHHHHHHHHHHHcCCCC
Confidence 344566789999999999999998887421 1 12257999999999999999999999999
Q ss_pred CCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCC-------HHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCcc
Q 004977 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK 227 (721)
Q Consensus 155 gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 227 (721)
||+|+|+++|+++|++++|||+++|+++||+++.++ .+++.+++++++++++|++.+..+.+.......+.+.
T Consensus 74 gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 153 (576)
T 3gqw_A 74 GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELH 153 (576)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcce
Confidence 999999999999999999999999999999999999 8999999999999999999988877766654444322
Q ss_pred EEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHH
Q 004977 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (721)
Q Consensus 228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (721)
. ........ ............++|+++|+|||||||.||||+++|+++++.+...
T Consensus 154 ~------------------------~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~ 208 (576)
T 3gqw_A 154 V------------------------LSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAI 208 (576)
T ss_dssp E------------------------EEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHH
T ss_pred e------------------------cchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHh
Confidence 1 11111111 1112222345578999999999999999999999999999998887
Q ss_pred Hhh-CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHH
Q 004977 308 KTL-IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (721)
Q Consensus 308 ~~~-~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 385 (721)
... + ++.++|++++++|++|++++.. .+.++..|+++++..+..+... +..+...++++++|+++++|++++.
T Consensus 209 ~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~ 283 (576)
T 3gqw_A 209 SHDGI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMR----PLQWLKLISKNRGTVSVAPPFGYEL 283 (576)
T ss_dssp HHTTS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHC----TTHHHHHHHHTTCCEEEECHHHHHH
T ss_pred hhccc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhC----HHHHHHHHHHhCCeEEEcCHHHHHH
Confidence 665 5 8999999999999999999876 5667888998887443221101 1222333999999999999999987
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHH
Q 004977 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (721)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~ 465 (721)
+.+..... .......+++|.+++||+++++++.+.+
T Consensus 284 l~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 319 (576)
T 3gqw_A 284 CQRRVNEK--------------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQF 319 (576)
T ss_dssp HHHSCCHH--------------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHhccc--------------------------------------------ccccCChhhhHhhhccCccCCHHHHHHH
Confidence 76521111 1112234689999999999999999999
Q ss_pred HHhh------CCccccccccccccccccccCCCCC----------------------------CCCccCCCcCcceEEEE
Q 004977 466 NICM------GAPIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVPCCYIKLV 511 (721)
Q Consensus 466 ~~~~------g~~l~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~p~~~v~i~ 511 (721)
.+.+ +++++|.||+||++.+++....... ...++|+|+|+++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 399 (576)
T 3gqw_A 320 AECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 399 (576)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEE
T ss_pred HHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEE
Confidence 8877 6789999999999987765432211 01389999999999999
Q ss_pred ecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCe
Q 004977 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591 (721)
Q Consensus 512 d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G 591 (721)
| +++..+ ++|+.|||+|+|++++.|||++|+.|.+.+ .+ |||+|||+|++ +||+|+|+||+||+||+ +|
T Consensus 400 d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~---~~--g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G 468 (576)
T 3gqw_A 400 N-EAGMPV---AERVVGHICISGPSLMSGYFGDQVSQDEIA---AT--GWLDTGDLGYL-LDGYLYVTGRIKDLIII-RG 468 (576)
T ss_dssp C-TTSCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHH---HH--SCEEEEEEEEE-ETTEEEEEEETTTCEEE-TT
T ss_pred C-CCCCCC---CCCCeEEEEEeCccccccccCCcccccccc---CC--CeeeccceEEE-ECCEEEEEecCcceEEE-CC
Confidence 9 777654 488999999999999999999999888876 56 89999999999 79999999999999998 69
Q ss_pred eeeechHHHHHHhcCcccceEEEEecCCC-ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHH
Q 004977 592 EYISLGKVEAALISSDYVDNIMIHADPFH-NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAK 670 (721)
Q Consensus 592 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 670 (721)
++|+|.|||++|.+||+|.+++|++..+. ...+++++..... +.. .+++++.++
T Consensus 469 ~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~---------------------~~~----~~~l~~~l~ 523 (576)
T 3gqw_A 469 RNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISD---------------------EER----RGQLIHALA 523 (576)
T ss_dssp EEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCC---------------------HHH----HHHHHHHHH
T ss_pred EEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCc---------------------hhH----HHHHHHHHH
Confidence 99999999999999999998777665433 2344444432211 011 244555555
Q ss_pred HCCC-CCcccccEEEeeC--CCCCCCCCccCcccccChHHHHHHHHHHHHhhh
Q 004977 671 AAKL-DKFEIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720 (721)
Q Consensus 671 ~~~L-~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y 720 (721)
.+| +.|++|..+.+++ .+ | +|++||++|++|+++|++.+++.|
T Consensus 524 -~~l~~~~~~p~~i~~v~~~~l--P----~t~~GKi~r~~l~~~~~~~~~~~~ 569 (576)
T 3gqw_A 524 -ARIQSEFGVTAAIDLLPPHSI--P----RTSSGKPARAEAKKRYQKAYAASL 569 (576)
T ss_dssp -HHHHHHHSCCEEEEEECSSCS--C----BCTTSSBCHHHHHHHHHHHHTCC-
T ss_pred -HHHHHHhCCceeEEEECCCCc--C----cCCCccchHHHHHHHHHHHhhhcc
Confidence 455 6789999999887 45 6 999999999999999999988765
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2e-73 Score=650.36 Aligned_cols=508 Identities=19% Similarity=0.206 Sum_probs=392.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004977 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~ 159 (721)
...|+.++|+++|+++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~ 69 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLN----------K---------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL 69 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEE----------T---------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEc----------C---------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 45799999999999999999998752 1 1125799999999999999999999999999999
Q ss_pred EEccCcHhHHHHHHHHHhcCCEEEEecCCCC---HHHHHHHHHhcCceEEEECccchhHHHhhh-hcCCCccEEEEecCC
Q 004977 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLG---EDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEND 235 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~ 235 (721)
|+++|+++|++++|||+++|+++||+++.++ .+++.++++++++++++++.+....+.... ...+....+.
T Consensus 70 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~----- 144 (590)
T 3kxw_A 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP----- 144 (590)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE-----
T ss_pred EEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc-----
Confidence 9999999999999999999999999999884 578999999999999999987765543322 2222211111
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCC
Q 004977 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
....+++.... ..........++|+++|+|||||||.||||++||+++++.+.+....+ ++.
T Consensus 145 ----------------~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 145 ----------------AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp ----------------EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred ----------------eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 11111111110 111223456789999999999999999999999999999999998888 999
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHH
Q 004977 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
++|++++++|++|++++.. ++.+++.|+++++.++..+... +..+...++++++|++.++|+++..+.+......
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 282 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREEK 282 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh
Confidence 9999999999999999987 7788999999998544322111 1122333999999999999999998876321100
Q ss_pred HhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC----
Q 004977 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---- 470 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g---- 470 (721)
......++||.+++||+++++++.+.+.+.++
T Consensus 283 --------------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 283 --------------------------------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp --------------------------------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred --------------------------------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 01112368999999999999999999888773
Q ss_pred --CccccccccccccccccccCCC---------------------------CCCCCccCCCcCcceEEEEecCCCCcccC
Q 004977 471 --APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTS 521 (721)
Q Consensus 471 --~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~ 521 (721)
.+++|+||+||++.+++..... ....+++|+|+++ ++|+|++++..
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~--- 393 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP--- 393 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB---
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC---
Confidence 4799999999999877653321 1123688999998 88999655655
Q ss_pred CCCCCcceEEEccccccccccCCCcccccccccC----CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeeech
Q 004977 522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (721)
Q Consensus 522 ~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~p~ 597 (721)
+++|+.|||+|+||+++.|||++|+.|+++|..+ .+|.+||+|||+|++| ||+|+|+||+||+||+ +|+||+|.
T Consensus 394 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~ 471 (590)
T 3kxw_A 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQ 471 (590)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHH
T ss_pred CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHH
Confidence 4588999999999999999999999999999631 1233599999999999 9999999999999998 69999999
Q ss_pred HHHHHH-hcCcccc--eEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHC
Q 004977 598 KVEAAL-ISSDYVD--NIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA 672 (721)
Q Consensus 598 eIE~~l-~~~p~V~--~~~V~g~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (721)
|||++| ..+|.|. +|+|++.+++ ..+++++++.++.. +... .++|.+.++ .
T Consensus 472 eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~----~~~l~~~l~-~ 527 (590)
T 3kxw_A 472 DIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFM-------------------DDVA----QDNLFNEIF-E 527 (590)
T ss_dssp HHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTC-------------------CHHH----HHHHHHHHH-H
T ss_pred HHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccc-------------------cchh----HHHHHHHHH-H
Confidence 999999 8899999 7999887654 35788887764310 0001 133444444 4
Q ss_pred CCCC-ccccc-EEEee--CCCCCCCCCccCcccccChHHHHHHHHH
Q 004977 673 KLDK-FEIPA-KIKLM--PEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 673 ~L~~-~~~P~-~i~~~--~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
+|+. |++|. .++++ +++ | +|++|||+|++|+++|.+
T Consensus 528 ~l~~~~~~p~~~i~~v~~~~l--P----~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 528 LVYENHQLEVHTIVLIPLKAM--P----HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp HHHHHHSCCCCEEEEEETTCS--C----CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCceeEEEEECCCcc--C----cCCCcHHHHHHHHHHHHc
Confidence 4443 66775 56666 455 6 999999999999999875
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2e-61 Score=537.33 Aligned_cols=408 Identities=18% Similarity=0.199 Sum_probs=312.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccceeccCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004977 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i 160 (721)
..|+.++|+++++++||++|+++.+.. ++. .+.++++||+||.++++++|++|++.|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 479999999999999999999975311 011 1334689999999999999999999996 9999999
Q ss_pred EccCcHhHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHHhcCceEEEECccchhHHHhhhhcCCCc--cEEEEecCC
Q 004977 161 LAETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~ 235 (721)
+++|+++|++++|||+++|+++||+++ .++.+++.++|++++++++|++......+.......+.. ..++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 788999999999999999999998877776655443322 123332211
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCC
Q 004977 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
.. ............++|+|+|+|||||||.||||++||+|+++.+......+ .+.
T Consensus 168 ~~------------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 222 (480)
T 3t5a_A 168 DL------------------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FAD 222 (480)
T ss_dssp CT------------------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTT
T ss_pred cc------------------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccc
Confidence 10 00111123455789999999999999999999999999999998887776 666
Q ss_pred C------CcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHH
Q 004977 316 R------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 316 ~------~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
+ +|++++++|++|++++.. ++.+|+.|+++++.++..+... +..+...++++++| +..+|+++..++.
T Consensus 223 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~ 297 (480)
T 3t5a_A 223 TDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAA 297 (480)
T ss_dssp TTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHH
T ss_pred cccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHH
Confidence 6 999999999999999765 6788999999998654322111 12223338999999 8899999888765
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004977 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
..... .......+++||.+++||+++++++.+.+.+.
T Consensus 298 ~~~~~-------------------------------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 334 (480)
T 3t5a_A 298 RRTTD-------------------------------------------DDMAGRDLGNILTILSGSERVQAATIKRFADR 334 (480)
T ss_dssp HHCCT-------------------------------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcCc-------------------------------------------ccccccchhhhheeeecCCcCCHHHHHHHHHH
Confidence 31100 00111233689999999999999999999888
Q ss_pred hC------CccccccccccccccccccCCCC-------------------------CCCCccCCCcCcceEEEEecCCCC
Q 004977 469 MG------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGG 517 (721)
Q Consensus 469 ~g------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~p~~~v~i~d~~~~~ 517 (721)
++ +.++|.||+||++.+++...... ...+++|+|+| ++++|+|++++.
T Consensus 335 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~ 413 (480)
T 3t5a_A 335 FARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCI 413 (480)
T ss_dssp SGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTE
T ss_pred HhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCc
Confidence 73 47999999999998777654332 12358999999 999999965565
Q ss_pred cccCCCCCCcceEEEccccccccccCCCccccccccc-------CCCCcceEeeCcEEEEccCCeEEEEec
Q 004977 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV-------DERGMCWFYTGDIGQVYPDGCLEIIDR 581 (721)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~-------~~~g~gw~~TGDlg~~d~dG~l~i~GR 581 (721)
. +++|+.|||+|+||+++.|||++|++|+++|.. ..+++|||+|||+|++| ||+|+|+||
T Consensus 414 ~---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 414 E---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp E---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred C---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 5 458899999999999999999999999999941 11134899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.3e-54 Score=461.02 Aligned_cols=313 Identities=18% Similarity=0.242 Sum_probs=263.0
Q ss_pred CCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCcc-cc
Q 004977 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST-LT 352 (721)
Q Consensus 274 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~ 352 (721)
.||+|||+|||||||.||||++||+++++.+......+ +++++|++++++|++|++|+..++.++..|+++++.++ ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 37899999999999999999999999999999999888 99999999999999999999888889999999988443 22
Q ss_pred ccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCCchhhhHH
Q 004977 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (721)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (721)
... .++++++|++.++|++++.+++....
T Consensus 115 ~~~-----------~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------- 143 (358)
T 4gs5_A 115 PLA-----------GLDHADFDFVAMVPMQLQSILENSAT---------------------------------------- 143 (358)
T ss_dssp TTT-----------TCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------
T ss_pred HHH-----------HHHHhCCeEEEcChHHHHHhhccccc----------------------------------------
Confidence 222 38899999999999999998753110
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCccCCCcCcceEEEEe
Q 004977 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (721)
Q Consensus 433 ~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d 512 (721)
....++||.+++||+++++++.+++++ +|++++|+||+||++..++.........+.+|.|.||+++.+.
T Consensus 144 --------~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~- 213 (358)
T 4gs5_A 144 --------SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVD- 213 (358)
T ss_dssp --------GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEEC-
T ss_pred --------cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEec-
Confidence 001248999999999999999999986 5999999999999998888877777778899999999988763
Q ss_pred cCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCee
Q 004977 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (721)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~ 592 (721)
+.|||+++|+.. .+ |||+|||+|++|+|| ++|+||+||+||+ +|+
T Consensus 214 -------------~~Gel~~~g~~~------------------~~--g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~ 258 (358)
T 4gs5_A 214 -------------ERGCLHISGAVT------------------NG--QTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV 258 (358)
T ss_dssp -------------TTSEEEEESGGG------------------TT--CCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred -------------CcCceEEecccc------------------cC--cceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence 359999988632 44 899999999999888 6778999999997 699
Q ss_pred eeechHHHHHH---hcCcccceEEEE-ecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHHHHHHHHHHH
Q 004977 593 YISLGKVEAAL---ISSDYVDNIMIH-ADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665 (721)
Q Consensus 593 ~v~p~eIE~~l---~~~p~V~~~~V~-g~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 665 (721)
||+|.|||++| .+||.|.+|+|+ +.+|+. .++|+|+...... ..++|
T Consensus 259 ~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~--------------------------~~~~l 312 (358)
T 4gs5_A 259 KIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEA--------------------------LTERL 312 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHH--------------------------HHHHH
T ss_pred EECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCc--------------------------CHHHH
Confidence 99999999877 468999998876 555543 5888888765321 13678
Q ss_pred HHHHHHCCCCCcccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHH
Q 004977 666 SKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 716 (721)
Q Consensus 666 ~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i 716 (721)
+++++ ++||+|++|+.|++++++ | +|++|||+|++|+++|++..
T Consensus 313 ~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 313 TAEIR-SRVSTYENPKHIYFAKAF--A----KTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHH-HHSCGGGSCSCEEEESSC--C----BCTTSCBCHHHHHHHTC---
T ss_pred HHHHH-hhCCCCCCceEEEEECCc--C----CCCCCChhHHHHHHHhhhhc
Confidence 88888 899999999999999998 6 99999999999999987653
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3e-47 Score=418.20 Aligned_cols=351 Identities=15% Similarity=0.144 Sum_probs=262.4
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHh---hCCCCCCCcEEEeccCh-
Q 004977 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL- 326 (721)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl- 326 (721)
.+.+.+++.... +.......++++++|+|||||||.||||++||+++.+....+.. .+ ++.++|++++.+|+
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYG 146 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCc
Confidence 345566665432 11123346789999999999999999999999999877655443 45 88999999999998
Q ss_pred HHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHH
Q 004977 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406 (721)
Q Consensus 327 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~ 406 (721)
+|..++...+.++..|+++++.+... ...+...++++++|+++++|+++..|.+........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---------- 208 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQ--------TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD---------- 208 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCC--------HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC----------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCC--------HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC----------
Confidence 57777777788899999998843321 111223389999999999999999987643211000
Q ss_pred HHHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcccccccccccccc-
Q 004977 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG- 485 (721)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~- 485 (721)
...+++|.+++||+++++++.+.+.+.+|++++|.||+||+++.
T Consensus 209 -----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~ 253 (443)
T 2y4o_A 209 -----------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPG 253 (443)
T ss_dssp -----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEE
T ss_pred -----------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCe
Confidence 01158999999999999999999998889999999999998443
Q ss_pred ccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeC
Q 004977 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565 (721)
Q Consensus 486 ~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TG 565 (721)
++..... ...+ .+.|.++++++|+|++++..+ ++|+.|||+|+|. |++.| ++ +||+||
T Consensus 254 ~~~~~~~-~~~g-~~~~~~~~~~~i~d~~~g~~~---~~G~~Gel~v~~~------------t~~~~---p~--~~y~TG 311 (443)
T 2y4o_A 254 VACECVE-TKDG-PVIWEDHFYPEIIDPVTGEVL---PDGSQGELVFTSL------------TKEAM---PV--IRYRTR 311 (443)
T ss_dssp EEEECTT-TCCS-EEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS---CC--SSEEEE
T ss_pred EEeccCC-CCCc-eEEccCCeEEEEEcCCCCCCC---CCCCceEEEEeCC------------CcccC---hh--heeecC
Confidence 3322211 1112 555678999999996667654 4889999999972 44555 56 899999
Q ss_pred cEEEEccC-CeE-----EEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcCh--HHH
Q 004977 566 DIGQVYPD-GCL-----EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH--KAL 634 (721)
Q Consensus 566 Dlg~~d~d-G~l-----~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~--~~~ 634 (721)
|+|+++++ |++ +|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++.+ +.
T Consensus 312 Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~- 389 (443)
T 2y4o_A 312 DLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA- 389 (443)
T ss_dssp EEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT-
T ss_pred CEEEEcCCCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc-
Confidence 99999999 987 899999999998 5999999999999999999999998876432 46889999876 21
Q ss_pred HHHHHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCc-ccccEEEeeC--CCCCCCCCccCcccccChHHHHH
Q 004977 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.. ... -.++++++++ ++|+.| ++|..|.+++ ++ | +|++||++|+..++
T Consensus 390 ---------~~--------~~~----~~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~l--P----~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 390 ---------SV--------TDG----ERAALARELQ-HRIKTMVGVSSGVTVLAAGGI--P----ATATGKARRVIDRR 440 (443)
T ss_dssp ---------TC--------CHH----HHHHHHHHHH-HHHHHHTCCCCEEEEECTTCS--C----CCTTSCCCSEEECC
T ss_pred ---------cc--------hhh----HHHHHHHHHH-HHHHHHhCCceEEEEeCCCcc--c----CccCCcceEEEecc
Confidence 00 000 0245555665 667666 4888888885 55 6 99999999975443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.1e-47 Score=416.14 Aligned_cols=330 Identities=16% Similarity=0.155 Sum_probs=246.2
Q ss_pred CCCC-CCeEEEEeccCCCCCcchheeccHHHHHHHHHHH---hhCCCCCCCcEEEeccChHHHHHH-HHHHHHHHhcceE
Q 004977 271 LPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAI 345 (721)
Q Consensus 271 ~~~~-~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~ 345 (721)
...+ +|+++|+|||||||.||||++||+++.+.+..+. ..+ ++.++|++++.+|++|..+. ...+.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 3455 8999999999999999999999999987766553 334 78999999999998765554 4567789999999
Q ss_pred eeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhccccccCC
Q 004977 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425 (721)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 425 (721)
++.+.... ..+...++++++|+++++|+++..|.+........
T Consensus 160 ~~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------------------- 202 (436)
T 3qov_A 160 VPAAAGNS--------KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID----------------------------- 202 (436)
T ss_dssp ECCCSCCH--------HHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-----------------------------
T ss_pred EeCCCCCH--------HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-----------------------------
Confidence 88433211 11223389999999999999999998753321000
Q ss_pred chhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCccCCCcCc
Q 004977 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505 (721)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~ 505 (721)
...+++|.+++||+++++++.+.+.+.+|++++|.||+||+++.++..... ....+|.|.++
T Consensus 203 ----------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~ 264 (436)
T 3qov_A 203 ----------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDC 264 (436)
T ss_dssp ----------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTT
T ss_pred ----------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCc
Confidence 012589999999999999999999999999999999999996542222211 12336778889
Q ss_pred ceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCC------e---E
Q 004977 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG------C---L 576 (721)
Q Consensus 506 ~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG------~---l 576 (721)
++++|+|++++..++ +|+.|||+|+|. |++.| ++ +||+|||+|+++++| + +
T Consensus 265 ~~v~i~d~~~g~~~~---~g~~Gel~v~~~------------~~~~~---~~--~~y~TGDl~~~~~~gc~cG~~~~~il 324 (436)
T 3qov_A 265 YLVEIIDPETGEPVP---EGEIGELVLTTL------------DREMM---PL--IRYRTRDLTRILPGKCPCGRTHLRID 324 (436)
T ss_dssp EEEEEECTTTCSBCS---TTCCEEEEEEES------------SCCSS---CC--CSEEEEEEECEECSCCTTCCCSCEEC
T ss_pred eEEEEEECCCCCCCC---CCCceEEEEecc------------CcCCc---eE--EEEEcCCEEEEcCCCCCCCCCccccC
Confidence 999999977776654 889999999983 44455 56 899999999999998 5 6
Q ss_pred EEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCC---CceEEEEEEcChHHHHHHHHHhCCCcccHHHHhc
Q 004977 577 EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF---HNYCVALVVPSHKALEKWAHEASIKYEDLSELCN 653 (721)
Q Consensus 577 ~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (721)
+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.++ ...++|+|+++ +. ..+
T Consensus 325 ~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~----------~~~------- 385 (436)
T 3qov_A 325 RIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL----------STD------- 385 (436)
T ss_dssp CCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT----------CCC-------
T ss_pred cccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc----------ccc-------
Confidence 999999999998 599999999999999999999999998765 34699999987 32 000
Q ss_pred cHHHHHHHHHHHHHHHHHCCCCCc-ccccEEEeeC--CCCCCCCCccCcccccChHH
Q 004977 654 KAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 654 ~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~ 707 (721)
+.... +++++.++ .+|+.+ ++|..|++++ .+ | +|+ ||++|..
T Consensus 386 ~~~~~----~~l~~~l~-~~l~~~~~~p~~i~~v~~~~l--P----~t~-GKi~R~~ 430 (436)
T 3qov_A 386 NYIEL----EKIRRDII-RQLKDEILVTPKVKLVKKGSL--P----QSE-GKAVRVK 430 (436)
T ss_dssp CHHHH----HHHHHHHH-HHHHHHHSSCCEEEEECTTCC--C------------CEE
T ss_pred chhhH----HHHHHHHH-HHHHHhcCCceEEEEeCCCcc--c----CcC-CcceEEE
Confidence 00111 33444444 455556 7888999998 66 6 999 9999863
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.8e-46 Score=411.29 Aligned_cols=346 Identities=16% Similarity=0.136 Sum_probs=260.0
Q ss_pred EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHh---hCCCCCCCcEEEeccCh-H
Q 004977 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A 327 (721)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 327 (721)
+.+.+++..... .......++++++|+|||||||.||||++||+++...+..+.. .+ ++.++|++++.+|+ +
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL 145 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence 445566654321 1123446789999999999999999999999999877654433 45 88999999999998 6
Q ss_pred HHHHHHHHHHHHHhcceEeeCccccccccchhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 004977 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI 407 (721)
Q Consensus 328 h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~ 407 (721)
|..++...+.++..|+++++.+... ...+...++++++|+++++|+++..|.+........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~----------- 206 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQ--------TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD----------- 206 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCC--------HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-----------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCC--------HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-----------
Confidence 8888777788899999998743321 111223389999999999999999998743211000
Q ss_pred HHHHHHHhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcccccccccccccc-c
Q 004977 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-S 486 (721)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~ 486 (721)
...+++|.+++||+++++++.+.+.+.+|++++|.||+||+++. +
T Consensus 207 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~ 252 (437)
T 2y27_A 207 ----------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV 252 (437)
T ss_dssp ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEE
T ss_pred ----------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCee
Confidence 00148999999999999999999988889999999999998432 3
Q ss_pred cccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCc
Q 004977 487 TFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (721)
Q Consensus 487 ~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGD 566 (721)
+..... ....++.|.++++++|+|++++..+ ++|+.|||+|+| .|++.| ++ +||+|||
T Consensus 253 ~~~~~~--~~~g~~~~~~~~~~~i~d~~~g~~~---~~g~~Gel~v~~------------~t~~~~---~~--~~y~TGD 310 (437)
T 2y27_A 253 ASECVE--TKDGPTIWEDHFYPEIIDPETGEVL---PDGELGELVFTS------------LTKEAL---PI--IRYRTRD 310 (437)
T ss_dssp EECCTT--TCSSCEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEE------------SSCSSS---CC--CSEEEEE
T ss_pred EEecCC--CCCceeEccCceEEEEEcCCCCCCC---CCCCccEEEEec------------CCcCCc---hh--heeecCC
Confidence 322221 1112556778999999996667654 488999999997 244556 56 8999999
Q ss_pred EEEEcc-CCeE-----EEEecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCC---CceEEEEEEcChHHHHHH
Q 004977 567 IGQVYP-DGCL-----EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF---HNYCVALVVPSHKALEKW 637 (721)
Q Consensus 567 lg~~d~-dG~l-----~i~GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~ 637 (721)
+|++|+ +|++ +|+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++ ...++|+|+++++..
T Consensus 311 l~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~--- 386 (437)
T 2y27_A 311 LTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA--- 386 (437)
T ss_dssp EECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT---
T ss_pred EEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc---
Confidence 999999 6986 999999999998 699999999999999999999988887543 346899999875420
Q ss_pred HHHhCCCcccHHHHhccHHHHHHHHHHHHHHHHHCCCCCc-ccccEEEeeC--CCCCCCCCccCcccccChHH
Q 004977 638 AHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~ 707 (721)
. +.. -.++++++++ ++|+.| ++|..|.+++ ++ | +|+ ||++|+.
T Consensus 387 -------~--------~~~----~~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~l--P----~t~-GKi~r~~ 432 (437)
T 2y27_A 387 -------P--------DTA----AIQVAKQALA-YDIKSLIGVTAVINVLPVNGI--E----RSV-GKARRVV 432 (437)
T ss_dssp -------T--------CHH----HHHHHHHHHH-HHHHHHHCCCEEEEECCTTCS--C----CCS-SSCCCEE
T ss_pred -------c--------hhh----hHHHHHHHHH-HHHHHhcCCceEEEEeCCCCc--c----CCC-CcceEEE
Confidence 0 000 0245556665 667777 5888888884 55 6 999 9999974
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=1e-29 Score=271.73 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=170.9
Q ss_pred CCCCCeEEEEeccCCCCCcchheeccHHHHHHHHHHHhhC--CCCCCCcEEEeccCh-HHHHHHHHHHHHHHhcceEee-
Q 004977 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGY- 347 (721)
Q Consensus 272 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~~~- 347 (721)
..++++++|+|||||||.||+|+++|+++.+.+.++...+ .++.++|++++.+|+ +|++++...+.++..|+.++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999999888654332 267899999999999 999999887777889994433
Q ss_pred -Cccc---ccccc---------chhhccCccCcceeecceEEeechHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 004977 348 -GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414 (721)
Q Consensus 348 -~~~~---~~~~~---------~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (721)
++|. .+... ...+...+...++++++|++.++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 2222 00000 0000002223488999999999999999987642110
Q ss_pred hhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHH-Hhh-CCccccccccccccccccccCCC
Q 004977 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSEWD 492 (721)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~-~~~-g~~l~~~YG~TE~~~~~~~~~~~ 492 (721)
....+++|.+++||+++++++.+.+. +.+ |++++|.||+||+++++.....
T Consensus 227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 00113799999999999999999999 888 8999999999999876543221
Q ss_pred CCCCCccCCC------cCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCc
Q 004977 493 DPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (721)
Q Consensus 493 ~~~~~~vG~p------~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGD 566 (721)
.++|+| +|+++++|+|++++..+ ++|+.|||+|++.. ++.|. .+|+|||
T Consensus 280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~v---p~G~~GEl~vt~l~------------~~~~l------~ry~tgD 334 (369)
T 3hgu_A 280 ----TSESQQVIYDSFSPFITYDVVDSITAQTV---EYGERGNVIVTHLS------------PWAFY------PRVAERD 334 (369)
T ss_dssp ----CTTCSSCEEECCTTTEEEEEECTTTCSBC---CTTCEEEEEEEEEE------------TTEEE------EEEEEEE
T ss_pred ----ccCCCcccccCCCCCeEEEEECCCCCcCC---CCCCceEEEEEEcC------------ccccc------ccccCCc
Confidence 158999 99999999996577665 48999999998742 12221 4688888
Q ss_pred EEEEccC--C-------eEEEEecCCCeEEcCCee
Q 004977 567 IGQVYPD--G-------CLEIIDRKKDIVKLQHGE 592 (721)
Q Consensus 567 lg~~d~d--G-------~l~i~GR~~d~ik~~~G~ 592 (721)
++.+.+. | .+..++|.++..||. |.
T Consensus 335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv 368 (369)
T 3hgu_A 335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GV 368 (369)
T ss_dssp EEEEECCSTTCSSCEEEEEEECC------------
T ss_pred eEEEecCCCCCcCcccccceeccccCCCceee-ec
Confidence 8887543 2 366677888888775 64
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.27 E-value=5e-12 Score=108.45 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred ecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHH
Q 004977 580 DRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAE 656 (721)
Q Consensus 580 GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (721)
.|.|||||++ |+||+|.|||++|.+||+|.+++|++.+++ ..+.++|+..++. . .+..
T Consensus 1 srADDmIiv~-G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~ 61 (109)
T 3lax_A 1 SNADDMIILK-GVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG 61 (109)
T ss_dssp CGGGSCEEET-TEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred CCcCEEEEEC-CEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence 3899999985 999999999999999999999999887654 3577888776532 0 1222
Q ss_pred HHHHHHHHHHHHHHHCCCCCcccccEEEeeC--CCCCCCCCccCcccccChH
Q 004977 657 AVNEVQQALSKVAKAAKLDKFEIPAKIKLMP--EPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 657 ~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~ 706 (721)
..+++.++|++.++ ..+ .+|..+++++ .+ | +| +||++|-
T Consensus 62 ~~~~l~~~i~~~l~-~~~---gv~~~v~~v~~~~l--P----rt-sGKi~Rv 102 (109)
T 3lax_A 62 RLQALTREITRQLK-DEI---LVTPRVKLVPKGAL--P----KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHH-HHH---SSCCEEEEECTTCS--C----CC----CCCE
T ss_pred hhhhhHHHHHHHHH-HHh---CCccceEEEcCCee--c----CC-CCCcchh
Confidence 23344455555554 222 2455677775 34 5 88 7999883
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.20 E-value=1.3e-11 Score=105.55 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=62.6
Q ss_pred ecCCCeEEcCCeeeeechHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhccHH
Q 004977 580 DRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAE 656 (721)
Q Consensus 580 GR~~d~ik~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (721)
||.||+||+ +|+||+|.+||++|.+||+|.++++++.+++ +.++++|++ ++. .. ++..
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~----------~~-------~~~~ 61 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL----------FT-------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT----------CC-------CCHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc----------cc-------cchh
Confidence 899999998 5999999999999999999998877765433 358888887 431 00 0011
Q ss_pred HHHHHHHHHHHHHHHCCCCCcccccEEEeeC--CCCCCCCCccCcccccChH
Q 004977 657 AVNEVQQALSKVAKAAKLDKFEIPAKIKLMP--EPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 657 ~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~ 706 (721)
..+++.+.|++.++ ..+ .+|..|.+++ .+ | +| +||++|.
T Consensus 62 ~~~~l~~~i~~~l~-~~~---~~~~~v~~v~~~~l--P----rt-sGKi~R~ 102 (109)
T 3gxs_A 62 RLQALTREITRQLK-DEI---LVTPRVKLVPKGAL--P----KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHH-HHH---SSCCEEEEECTTCS--C----CC----CCCE
T ss_pred HHHHHHHHHHHHHH-Hhh---CCceEEEEECCCCc--c----CC-CCceEEE
Confidence 11233445555554 222 2334788887 45 5 99 9999884
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.61 E-value=2.2e-07 Score=101.87 Aligned_cols=136 Identities=15% Similarity=0.249 Sum_probs=85.0
Q ss_pred hCCc---EEEEEecCCCCCHHHHHHHHHhh-CCccc-cccccccccccccccCCCCCCCCccCC-CcCc-ceEEEEecCC
Q 004977 443 LGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDE 515 (721)
Q Consensus 443 ~~~~---lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~ 515 (721)
+.++ +..++.||. ..-...++... +.+++ ..|++||+.... .......++..+. .+|+ +-...++.++
T Consensus 300 lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~p~~~~~~L~p~~~ffEFIP~~~ 374 (609)
T 4b2g_A 300 IWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFGL--NLNPMSKPSEVSYTIMPNMAYFEFLPHEH 374 (609)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEEE--CSCTTSCGGGCCEEECTTSCEEEEEEGGG
T ss_pred hCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeeee--ecCCCCCcccCceeecCCcEEEEEEeccc
Confidence 4567 556666763 22234444444 56766 999999974332 2111111122232 2233 3344555333
Q ss_pred C------Cc------ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc----CCeEEEE
Q 004977 516 G------GY------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEII 579 (721)
Q Consensus 516 ~------~~------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~----dG~l~i~ 579 (721)
. .. ...+..|+.+||+|... .|.| -|++||+++++. ..++.|+
T Consensus 375 ~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~~ 433 (609)
T 4b2g_A 375 SSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHFV 433 (609)
T ss_dssp TTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEEE
Confidence 2 11 11356888999999543 2443 289999999973 4689999
Q ss_pred ecCCCeEEcCCeeeeechHHHHHHhc
Q 004977 580 DRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 580 GR~~d~ik~~~G~~v~p~eIE~~l~~ 605 (721)
||.+++|++ .|++|++.+||+++.+
T Consensus 434 gR~~~~l~~-~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 434 RRKNVLLSI-DSDKTDEAELQKAVDN 458 (609)
T ss_dssp EETTCCBCS-SSCCBCHHHHHHHHHH
T ss_pred EecCCeEEc-cccCCCHHHHHHHHHH
Confidence 999999997 5999999999999973
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.57 E-value=1.1e-07 Score=104.08 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=86.4
Q ss_pred hCCc---EEEEEecCCCCCHHHHHHHHHhh-CCccc-cccccccccccccccCCCCCCCCccCC-CcCc-ceEEEEecCC
Q 004977 443 LGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDE 515 (721)
Q Consensus 443 ~~~~---lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~ 515 (721)
+.++ +..++.||. ..-...++..+ +.+++ ..|++||+.... .......+...|. .+|+ +-...++.++
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGI--NLDPLCKPEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEE--CSCTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeee--ccCCCCCcccCceeecCCcEEEEEEeccc
Confidence 4567 666777773 22234444444 67777 999999964322 2111111122332 2233 3445565332
Q ss_pred CC---c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc----CCeEEEEecCCCeE
Q 004977 516 GG---Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEIIDRKKDIV 586 (721)
Q Consensus 516 ~~---~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~----dG~l~i~GR~~d~i 586 (721)
.. . +..+..|+.+||+|...+ |.| -|++||+.++.. ..++.|+||.|++|
T Consensus 370 ~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp TCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred cCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 21 1 112567889999997542 322 389999999975 46899999999999
Q ss_pred EcCCeeeeechHHHHHHhc
Q 004977 587 KLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 587 k~~~G~~v~p~eIE~~l~~ 605 (721)
.+ .|+++++.+||+++.+
T Consensus 429 ~~-~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 429 SI-DSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp CS-SSCCEEHHHHHHHHHH
T ss_pred Ee-eeeECCHHHHHHHHHH
Confidence 97 5999999999999974
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.46 E-value=9.1e-07 Score=96.66 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=89.1
Q ss_pred HhCCcEE--EEEecCCCCCHHHHHHHHHhh-CCccc-cccccccccccccccCCCCCCCCccCC-CcCc-ceEEEEecCC
Q 004977 442 VLGGRIR--FMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDE 515 (721)
Q Consensus 442 ~~~~~lr--~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~ 515 (721)
.+.++++ .++.+|.. ..-...++..+ +.++. ..|++||+-... .......++..+. .+|+ .-...++.++
T Consensus 299 ~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAA--NVTPRLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEE--CCCTTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred HhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeee--ecCCCCCccccceeecCCcEEEEEEeccc
Confidence 3567885 23334422 22234444444 57777 999999974332 2211122222222 2333 2334444322
Q ss_pred CC-----c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC----CeEEEEecCCC
Q 004977 516 GG-----Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GCLEIIDRKKD 584 (721)
Q Consensus 516 ~~-----~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G~l~i~GR~~d 584 (721)
.. . +..+..|+.+||+|...+ |.| -|++||+.++..- .++.|+||.++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~ 433 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNL 433 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCC
Confidence 11 1 113678889999997542 322 3899999999642 57999999999
Q ss_pred eEEcCCeeeeechHHHHHHhc------Cc--ccceEEEEec
Q 004977 585 IVKLQHGEYISLGKVEAALIS------SD--YVDNIMIHAD 617 (721)
Q Consensus 585 ~ik~~~G~~v~p~eIE~~l~~------~p--~V~~~~V~g~ 617 (721)
++++. |+++++.+||+++.+ .. .|.|-.++.+
T Consensus 434 ~l~~~-Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 434 ILSIN-IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp CBCSS-SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred eEEee-eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence 99985 999999999999864 22 3556656554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.48 E-value=2 Score=45.56 Aligned_cols=105 Identities=13% Similarity=-0.030 Sum_probs=82.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccC--cHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n--~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++..+++- ....+..+++++..|+.+++.++ ..++.+...+++.+++++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 468999999999889988988999999999998875 34455577888999999888754 477889999999999999
Q ss_pred EECccchhHHHhhhh------cCCCccEEEEecC
Q 004977 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 234 (721)
+..+.....+.+... .++.++.++.-+.
T Consensus 183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 999987766654321 1456777776443
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.15 E-value=1.7 Score=46.01 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=81.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCc--HhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+.+++++. ..++.+...+++.+++++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 4689999998888888888889999999999988853 3334567888999999987755 478999999999999999
Q ss_pred EECccchhHHHhhhh------cCCCccEEEEec
Q 004977 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
+..+.....+.+... ..+.++.+++-+
T Consensus 187 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 219 (437)
T 2y27_A 187 MVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA 219 (437)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence 999888766654321 135677776644
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.48 E-value=2.1 Score=45.43 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=81.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCc--HhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++.. ..++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 4689999998888888888889999999999988863 3345567888899999888765 478899999999999999
Q ss_pred EECccchhHHHhhhh------cCCCccEEEEec
Q 004977 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
+..+.....+.+... ..+.++.++.-+
T Consensus 189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 221 (443)
T 2y4o_A 189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA 221 (443)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence 999887765544321 135677776644
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=77.06 E-value=39 Score=36.47 Aligned_cols=102 Identities=10% Similarity=-0.094 Sum_probs=76.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH--HH-HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+..+... .++.++|++...+|-+..+ .. .+++++..|+..+..+ ...++.+...+++.++++
T Consensus 200 V~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTI 275 (539)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSE
T ss_pred EEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeE
Confidence 468999887776655543 4788999999888866433 33 5788899999888764 578899999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEecC
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 234 (721)
++..+.....+.... ..++.++.++.-+.
T Consensus 276 ~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 276 TALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp EEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred EEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 999988776654432 24567787776443
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=76.64 E-value=38 Score=36.08 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=74.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
..+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++++..|+..+..+ ...++.+...+++.++.+++
T Consensus 181 v~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 181 VPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 46899998877666554 45899999999988875332 334677888999888775 57899999999999999999
Q ss_pred ECccchhHHHhhhhc-CCCccEEEEe
Q 004977 208 CDSKQLKKLSAVSSS-LKTIKNVIYF 232 (721)
Q Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~ii~~ 232 (721)
+.+.....+...... ...++.++.-
T Consensus 257 ~~P~~~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 257 LVPQTLNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp ECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred chHHHHHHHHhcCCCCcCcccEEEEe
Confidence 999887766554322 2256666653
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=76.32 E-value=18 Score=39.35 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=75.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+......+...++.++|++..++|-...+ ...+++++ .|+..+.++ ...++.+...+++.+++++
T Consensus 210 v~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 287 (548)
T 2d1s_A 210 VQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSV 287 (548)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEE
T ss_pred EEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEE
Confidence 4689999887766655443336889999998888775433 33467777 999888775 5788999999999999999
Q ss_pred EECccchhHHHhhh----hcCCCccEEEEec
Q 004977 207 ICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
+..+.....+.... ..++.++.++.-+
T Consensus 288 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp EECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred EecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 99988877665432 1345677776633
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.10 E-value=11 Score=38.62 Aligned_cols=103 Identities=10% Similarity=-0.035 Sum_probs=72.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcH--hHHHHHHHHHhcCCEEEEecCCCCHH--------------
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGED-------------- 192 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~-------------- 192 (721)
..+|.+.+...+..++..+...|+.++|++..+++-+. --+...++++..|+.+++.. ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 46799999888887777777889999999999988622 22344455588999655543 3444
Q ss_pred ---------HHHHHHHhcCceEEEECccchhHHHhhh----hcCCCccEEEEec
Q 004977 193 ---------ALIHSLNETQVTTLICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 193 ---------~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
++...+++.++.++++.+.....+.+.. ..++.++.++.-+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG 240 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence 6667999999999999987765553321 2334566666643
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.00 E-value=35 Score=36.90 Aligned_cols=102 Identities=12% Similarity=-0.029 Sum_probs=76.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHHH---HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI---AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+..++.. .++.++|++..++|....+-. .+++++..|+..+..+ ...+..+...+++.++++
T Consensus 209 v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCE
Confidence 468999988777666544 589999999999886544433 4788889999888764 467888899999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEecC
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 234 (721)
+...+.....+.... ..++.++.++.-+.
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp EEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred EEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 999988766554332 34567787776443
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=72.36 E-value=40 Score=36.14 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=73.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++.. .++.++|++...+|-...+- ..+++++ .|+..+.. +...++.+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 468999988777666554 48999999999888764433 2355555 88888876 56789999999999999999
Q ss_pred EECccchhHHHhhh----hcCCCccEEEEec
Q 004977 207 ICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
...+.....+.... ..++.++.++.-+
T Consensus 263 ~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp EECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred EeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 99988776654432 2456777777644
No 51
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=66.76 E-value=86 Score=34.41 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=74.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHh--HHH-HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~-~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+...... .++.++|++..+++-+.. +.. .+++++..|+..+.... ..+..+...+++.++++
T Consensus 202 V~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcE
Confidence 468999887776665554 378899999999885543 333 47888889998887654 57788889999999999
Q ss_pred EEECccchhHHHhhh------hcCCCccEEEEecC
Q 004977 206 LICDSKQLKKLSAVS------SSLKTIKNVIYFEN 234 (721)
Q Consensus 206 vi~~~~~~~~~~~~~------~~~~~~~~ii~~~~ 234 (721)
+...+.....+.... ..++.++.+++-++
T Consensus 278 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 278 TALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp EEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred EEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 999988776554432 14567777776543
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=64.35 E-value=41 Score=35.92 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=74.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCC--CCCCEEEEEccCcHhH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCce
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGH--NVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv--~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (721)
..+|.+.+...+..++. ..++ .++|++...+|-...+ ...+++++..|+..+..+ ...+..+...+++.+++
T Consensus 171 V~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 246 (504)
T 1t5h_X 171 AIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVT 246 (504)
T ss_dssp EEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred EEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCe
Confidence 46888888766655543 3477 7889988888876443 245788899999988875 47788999999999999
Q ss_pred EEEECccchhHHHhhh-h-----cCCCccEEEEec
Q 004977 205 TLICDSKQLKKLSAVS-S-----SLKTIKNVIYFE 233 (721)
Q Consensus 205 ~vi~~~~~~~~~~~~~-~-----~~~~~~~ii~~~ 233 (721)
+++..+.....+.... . .++.++.++.-+
T Consensus 247 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 9999988877665433 1 346677776643
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=63.81 E-value=40 Score=36.53 Aligned_cols=104 Identities=10% Similarity=0.046 Sum_probs=76.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
..+|.+.+...+......+...++.++|++..++|-...+ +...++++..|+..+.+ +...++.+...+++.++++++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-YRFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHHHHcCCeEEE
Confidence 4689988877665554444446788999999888876332 34567778899988877 457889999999999999999
Q ss_pred ECccchhHHHhhh----hcCCCccEEEEec
Q 004977 208 CDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 208 ~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
+.+.....+.... ..++.++.++.-+
T Consensus 287 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 316 (550)
T 3rix_A 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316 (550)
T ss_dssp ECHHHHHHHHHCCGGGGSCCTTCCEEEECS
T ss_pred eCcHHHHHHHhCccccccCcccccEEEEec
Confidence 9988876665432 2356777777643
No 54
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=61.05 E-value=76 Score=34.46 Aligned_cols=103 Identities=6% Similarity=0.037 Sum_probs=72.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecC-CCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+ +........ ....|+.++|++..+++-+..+- ..+++++..|+..+.... ...++.+...+++.++++
T Consensus 224 V~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 224 AEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 467888 443211111 14568999999998888765433 356788889988887754 678999999999999999
Q ss_pred EEECccchhHHHhhh---hcCCCccEEEEecC
Q 004977 206 LICDSKQLKKLSAVS---SSLKTIKNVIYFEN 234 (721)
Q Consensus 206 vi~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 234 (721)
++..+.....+.... ..++.++.++..+.
T Consensus 301 ~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp EEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred EeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 999988777665431 13466777776543
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=60.87 E-value=66 Score=34.31 Aligned_cols=102 Identities=7% Similarity=0.029 Sum_probs=74.5
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.+... ..++.+...+++.++++
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 46899988776665544 45889999999998876433 34578889999998877543 56788999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEec
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
++..+.....+.... ..++.++.++..+
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 999988776554322 2345666666543
No 56
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=59.95 E-value=40 Score=34.16 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=66.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
..+|++.+...+..++.. .+++++|++..++|-...+ +..++..+..|+..+...+.... ...+++.++.++.
T Consensus 55 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence 468999988776665543 5899999999988865332 34455666777777777654332 3467888999999
Q ss_pred ECccchhHHHhhh---hcCCCccEEEEec
Q 004977 208 CDSKQLKKLSAVS---SSLKTIKNVIYFE 233 (721)
Q Consensus 208 ~~~~~~~~~~~~~---~~~~~~~~ii~~~ 233 (721)
..+.....+.+.. ..++.++.++.-+
T Consensus 129 ~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 129 MVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp ECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred cChHHHHHhhccccccccCCcceEEEEcc
Confidence 9887766554322 2345666666533
No 57
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=59.91 E-value=40 Score=36.04 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=74.5
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (721)
..+|++.+...+..... ..++.++|++..++|-+..+ +..+++++..|+..+.++.. ..++.+...+++.++++
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 46899988776655443 45889999999998876432 34578889999998888653 56788999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEec
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
++..+.....+.... ..++.++.++..+
T Consensus 239 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 239 WTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp EEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred EEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 999988765543322 2345677776643
No 58
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=58.55 E-value=52 Score=35.49 Aligned_cols=104 Identities=9% Similarity=-0.107 Sum_probs=73.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH-HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF-IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
..+|.+.+...+.... .....++.++|++...+|-....- ..+++++..|+..+...+...++.+...+++.++++++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 4689888764433211 112347889999998888653332 24577888899998887777899999999999999999
Q ss_pred ECccchhHHHhhh----hcCCCccEEEEec
Q 004977 208 CDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 208 ~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
..+.....+.+.. ..++.++.+++-+
T Consensus 273 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 273 GVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp ECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred cchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 9988776554432 2456777777643
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=57.29 E-value=58 Score=35.49 Aligned_cols=102 Identities=7% Similarity=-0.092 Sum_probs=73.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecCCC---CHHHHHHHHHhcCc
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQV 203 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~ 203 (721)
..+|.+.+...+..+.. ..++.++|++..++|-...+- ..+++++..|+..+...+.. .+..+...+++.++
T Consensus 185 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~ 261 (590)
T 3kxw_A 185 VMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261 (590)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred EEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence 46899999887766554 458999999999998875543 34788899999988876532 56788889999999
Q ss_pred eEEEECccchhHHHhhh-------hcCCCccEEEEec
Q 004977 204 TTLICDSKQLKKLSAVS-------SSLKTIKNVIYFE 233 (721)
Q Consensus 204 ~~vi~~~~~~~~~~~~~-------~~~~~~~~ii~~~ 233 (721)
+++.+.+.....+.... ..++.++.++.-+
T Consensus 262 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 262 TISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp SEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred eeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 99988776665554321 1345667666533
No 60
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=56.24 E-value=58 Score=35.05 Aligned_cols=105 Identities=7% Similarity=0.005 Sum_probs=75.7
Q ss_pred EEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEccCcHh--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+........ ..++.++|++...+|-... +...+++.+..|+..+.. +...++.+...+++.++++
T Consensus 196 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~ 274 (536)
T 3ni2_A 196 VMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM-PKFEIGSLLGLIEKYKVSI 274 (536)
T ss_dssp EEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC-SSCCHHHHHHHHHHHTCCE
T ss_pred HHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc-CCCCHHHHHHHHHHhCCeE
Confidence 46899988766554433222 3478899999988886533 334568888999988877 4578899999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEecC
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 234 (721)
+.+.+.....+.... ..++.++.++.-+.
T Consensus 275 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe 307 (536)
T 3ni2_A 275 APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGA 307 (536)
T ss_dssp EEECHHHHHHHHTCSCGGGSCCTTCCEEEEESS
T ss_pred EEccHHHHHHHHhCcccccCCCccceEEEECCC
Confidence 999988776665432 23567777776443
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.33 E-value=65 Score=35.75 Aligned_cols=104 Identities=12% Similarity=0.008 Sum_probs=73.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecCC---CCHHHHHHHHHhcCc
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQV 203 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~ 203 (721)
..+|.+.+...+..... ...+++++|++...++-+...- ..+++.+..|+..+..+.. ..++++..++++.++
T Consensus 274 V~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 274 VLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 35788776544322211 2358899999988887764433 3467899999999988642 467889999999999
Q ss_pred eEEEECccchhHHHhhhh------cCCCccEEEEecC
Q 004977 204 TTLICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (721)
Q Consensus 204 ~~vi~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 234 (721)
+++++.+.....+.+... .+++++.++..++
T Consensus 352 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred eEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 999999988776655332 2466777776544
No 62
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=53.79 E-value=72 Score=35.17 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=74.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEec-CCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIY-SSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+. .....++.++|++..+++-+.+. +..+++++..|+..+..+ ....++.+...+++.+++++
T Consensus 182 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 182 IACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 4688887754332 22345889999999998876543 344788889998887763 35788999999999999999
Q ss_pred EECccchhHHHhhh-hcCCCccEEEEecC
Q 004977 207 ICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (721)
Q Consensus 207 i~~~~~~~~~~~~~-~~~~~~~~ii~~~~ 234 (721)
...+.....+.... ..++.++.+++-++
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 99888776665432 45677888877554
No 63
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=52.83 E-value=80 Score=34.06 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=75.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
..+|.+.+...+..++.. .++.++|++..++|-...+ +..++.++..|+..+.+. ...++.+...+++.++.+++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 468999998887776654 4789999998888765432 233677788898888775 67889999999999999999
Q ss_pred ECccchhHHHhhhh------cCCCccEEEEec
Q 004977 208 CDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 208 ~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
..+.....+..... .++.++.++.-+
T Consensus 274 ~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg 305 (549)
T 3g7s_A 274 AVPPALNVLVNTLESSNKTYDWSYLKVFATGA 305 (549)
T ss_dssp ECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred eCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence 99988766654321 235666666543
No 64
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=50.63 E-value=75 Score=34.62 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=63.4
Q ss_pred hCCCCCCCEEEEEccCcHhH--HHHHHHHHhcCCEEEEec-CCCCHHHHHHHHHhcCceEEEECccchhHHHhhh---hc
Q 004977 149 NFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIY-SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS---SS 222 (721)
Q Consensus 149 ~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~ 222 (721)
..++.+++++...++..... +..+++.+..|+.++..+ ....++.+...+++.++++++..+.....+.... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 339 (580)
T 3etc_A 260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYN 339 (580)
T ss_dssp TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---C
T ss_pred hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCC
Confidence 35889999988887766443 334688899999988875 5788999999999999999999988776665432 12
Q ss_pred CCCccEEEEec
Q 004977 223 LKTIKNVIYFE 233 (721)
Q Consensus 223 ~~~~~~ii~~~ 233 (721)
++.++.++..+
T Consensus 340 l~~lr~i~~gG 350 (580)
T 3etc_A 340 FSTLKYAVVAG 350 (580)
T ss_dssp CTTCCEEEECS
T ss_pred CccceEEEEcc
Confidence 45677776644
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=48.87 E-value=86 Score=34.00 Aligned_cols=102 Identities=9% Similarity=-0.040 Sum_probs=74.5
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcH-hHHHHHHHHHhcCCEEEEecC-CCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV-EWFIAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...... ....++.++|++..+++-+. -....+++++..|+..+.... ...+..+...+++.+++++
T Consensus 232 V~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 46898887533221 23348899999999888753 345567888899998887754 5678899999999999999
Q ss_pred EECccchhHHHhh-hhcCCCccEEEEecC
Q 004977 207 ICDSKQLKKLSAV-SSSLKTIKNVIYFEN 234 (721)
Q Consensus 207 i~~~~~~~~~~~~-~~~~~~~~~ii~~~~ 234 (721)
...+.....+.+. ...++.++.++.-+.
T Consensus 308 ~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 308 QLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 9998877665543 345677888777543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=48.78 E-value=76 Score=35.29 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=69.8
Q ss_pred EeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecCC---CCHHHHHHHHHhcCce
Q 004977 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQVT 204 (721)
Q Consensus 130 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~~ 204 (721)
.+|.+.+...+.... -...++.++|++...++-+...- ..+++.+..|+..+..+.. ..++++..++++.+++
T Consensus 281 ~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt 358 (663)
T 1ry2_A 281 QHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT 358 (663)
T ss_dssp EECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred EEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence 567776654332221 12468899999888777654332 3457889999998887642 4678899999999999
Q ss_pred EEEECccchhHHHhhhh------cCCCccEEEEec
Q 004977 205 TLICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 205 ~vi~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
++++.+.....+.+... .++.++.++..+
T Consensus 359 ~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gG 393 (663)
T 1ry2_A 359 QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 393 (663)
T ss_dssp EEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECS
T ss_pred EEEecHHHHHHHHhcCccccccCCcCceEEEEEEc
Confidence 99999887766654322 245677766644
No 67
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=48.16 E-value=1.1e+02 Score=32.45 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=67.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..+.. ..++.++|++..++|-...+ ...+.+++..|+.+++ . ...++.+...+++.++.++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcEE
Confidence 46899988777666554 45889999999998875433 2333344455554444 3 6789999999999999999
Q ss_pred EECccchhHHHhhh--hcCCCccEEEE
Q 004977 207 ICDSKQLKKLSAVS--SSLKTIKNVIY 231 (721)
Q Consensus 207 i~~~~~~~~~~~~~--~~~~~~~~ii~ 231 (721)
+..+.....+.... ..++.++.++.
T Consensus 253 ~~~p~~~~~l~~~~~~~~l~~lr~~~~ 279 (509)
T 3ivr_A 253 AEFAPMLGNILDQAAPAQLASLRAVTG 279 (509)
T ss_dssp EEETTHHHHHHHHCCGGGGTTCCEEEE
T ss_pred EecHHHHHHHHhcccccchhhhheecc
Confidence 98888776654432 34456666654
No 68
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=47.64 E-value=43 Score=36.32 Aligned_cols=105 Identities=11% Similarity=-0.067 Sum_probs=76.5
Q ss_pred EEeeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004977 129 EWQTYGEVFDRACSFASGLV-----NFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~-----~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (721)
..+|.+.+...+..++..+. ...+...+++..+++..... +..++.++..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 46899999888888777664 24577888888877766543 3446778888988887654444567788899999
Q ss_pred ceEEEECccchhHHHhhhhcCCCccEEEEec
Q 004977 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (721)
++++...+..+..+......++.++.+++-+
T Consensus 273 ~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG 303 (562)
T 3ite_A 273 VTHAGIVPSLLDQTGLVPEDAPHLVYLGVGG 303 (562)
T ss_dssp CCEEEECHHHHHHHTCCGGGSTTCCEEEEES
T ss_pred CCEEEcCHHHHhhcccCccccCceEEEEEec
Confidence 9999999887665544445667788777644
No 69
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=41.80 E-value=87 Score=33.92 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=70.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+..++ ...++.++|++..+++-+... +..++.++..|+..+.+... ..+..+...+++.++.+
T Consensus 200 V~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~ 276 (563)
T 1amu_A 200 TMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV 276 (563)
T ss_dssp EEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCE
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcE
Confidence 4688888865544333 345899999999888765433 33567788899988877543 56788999999999999
Q ss_pred EEECccchhHHHhhhhcCCCccEEEEec
Q 004977 206 LICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 206 vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (721)
+...+.....+.. ...+.++.++.-+
T Consensus 277 ~~~~P~~~~~l~~--~~~~~lr~~~~gG 302 (563)
T 1amu_A 277 ITLPPTYVVHLDP--ERILSIQTLITAG 302 (563)
T ss_dssp EEECHHHHTTSCT--TTCCSCSEEEEES
T ss_pred EEeCHHHHHHHHh--cccccccEEEEEE
Confidence 9988776544322 2356677777644
No 70
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=41.79 E-value=1.3e+02 Score=31.95 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=64.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcH--hHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+ ++.++|++...++-.. .++..+++.+..|+..+.. +...++.+...+ +.++.++
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCChHHHHHHH-hhCCeEE
Confidence 4689999988877766655 7889999988887643 3344578899999988877 456777777777 6789999
Q ss_pred EECccchhHHHh
Q 004977 207 ICDSKQLKKLSA 218 (721)
Q Consensus 207 i~~~~~~~~~~~ 218 (721)
+..+.....+..
T Consensus 248 ~~~P~~~~~l~~ 259 (505)
T 3nyq_A 248 FGVPTMYHRIAE 259 (505)
T ss_dssp EECHHHHHHHHH
T ss_pred EehHHHHHHHHH
Confidence 998887766554
No 71
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=40.75 E-value=1.1e+02 Score=30.61 Aligned_cols=67 Identities=4% Similarity=-0.157 Sum_probs=49.2
Q ss_pred HHHHhCCC-CCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc
Q 004977 145 SGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (721)
Q Consensus 145 ~~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (721)
..+.+.|. ++|+.|.+....+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445564 88888755566677777888888888988776656555556667889999999999864
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=38.81 E-value=1.6e+02 Score=34.36 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred EEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEccCcH--hHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+........ ..++.++|++..++|-.. .+...++..+..|+..+.. +...++.+...+++.++.+
T Consensus 243 V~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~ 321 (979)
T 3tsy_A 243 VMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM-PKFEINLLLELIQRCKVTV 321 (979)
T ss_dssp EEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC-SSCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe-CCCCHHHHHHHHHHhCCeE
Confidence 47899988776554433222 347889999998888653 3345578888999988876 4577899999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEecCC
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEND 235 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 235 (721)
+...+.....+.... ..++.++.++.-+..
T Consensus 322 ~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp EEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred EEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 999988776654432 235677777765443
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=36.05 E-value=1.3e+02 Score=32.33 Aligned_cols=103 Identities=7% Similarity=-0.067 Sum_probs=71.8
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHh--HHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHHhcCc
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQV 203 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~ 203 (721)
..+|.+.+...+..+... ..++.++|++..++|-... ++..+++.+..|+..+.+.+ ...+..+...+++.++
T Consensus 194 V~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (576)
T 3gqw_A 194 VIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRG 271 (576)
T ss_dssp EEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTC
T ss_pred EEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCC
Confidence 468999887665544322 2589999999998887654 34557788888988877754 2456778899999999
Q ss_pred eEEEECccchhHHHhhh-------hcCCCccEEEEec
Q 004977 204 TTLICDSKQLKKLSAVS-------SSLKTIKNVIYFE 233 (721)
Q Consensus 204 ~~vi~~~~~~~~~~~~~-------~~~~~~~~ii~~~ 233 (721)
+++++.+.....+.... ..++.++.++.-+
T Consensus 272 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 272 TVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp CEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred eEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 99999887665443321 1345667666633
No 74
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=35.73 E-value=2.6e+02 Score=29.53 Aligned_cols=104 Identities=4% Similarity=-0.008 Sum_probs=72.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.+... .....+...+...++.+
T Consensus 163 V~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 241 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI 241 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred EEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence 4689998876554443221 25788889888877765433 45567888899988877554 36788999999999999
Q ss_pred EEECccchhHHHhhh----hcCCCccEEEEec
Q 004977 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (721)
Q Consensus 206 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~ 233 (721)
+...+.....+.... ..++.++.++.-+
T Consensus 242 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 242 WTSTPSFADMAMLSDDFCQAKMPALTHFYFDG 273 (521)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred EEeCCCHHHHHhhhhccccccCccceEEEEec
Confidence 999888765554322 2346677766633
No 75
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=33.15 E-value=1.5e+02 Score=30.85 Aligned_cols=101 Identities=10% Similarity=-0.035 Sum_probs=69.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCC------CCEEEEEccCcH--hHHHHHHHHHhcCCEEEEecCC---CCHHHHHHH
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNV------DTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSS---LGEDALIHS 197 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~------gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~---~~~~~l~~~ 197 (721)
..+|.+.+...+..+...+ ++.+ +|++..++|-.- .++..+++++..|+..+...+. ..++.+...
T Consensus 201 V~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~ 277 (480)
T 3t5a_A 201 VVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL 277 (480)
T ss_dssp EEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH
T ss_pred EEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH
Confidence 4789999988877776655 3444 888888888764 3456678999999998887654 367888899
Q ss_pred HHhcCceEEEECccchhHHHhh--------hhcCCCccEEEEec
Q 004977 198 LNETQVTTLICDSKQLKKLSAV--------SSSLKTIKNVIYFE 233 (721)
Q Consensus 198 l~~~~~~~vi~~~~~~~~~~~~--------~~~~~~~~~ii~~~ 233 (721)
+++.++. +...+.....+... ...++.++.+++-+
T Consensus 278 i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 278 MASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp TTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred HHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 9999999 55555444333221 12346677777643
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=30.77 E-value=2.1e+02 Score=28.64 Aligned_cols=70 Identities=6% Similarity=-0.139 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc
Q 004977 142 SFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (721)
Q Consensus 142 ~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (721)
.+.....+--+++|.+..+....+-.-+.+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3333333333678877777777788888888999999988877767666666778899999999999754
No 77
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=30.62 E-value=2.5e+02 Score=29.55 Aligned_cols=97 Identities=8% Similarity=0.076 Sum_probs=68.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHh--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..+... .++.++|++...+|-... +...++.++..|+..+.+ +...++.+...++ +++++
T Consensus 173 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~--~~t~~ 246 (503)
T 4fuq_A 173 AMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL-PKFDPDKILDLMA--RATVL 246 (503)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC-SSCCHHHHHHHHT--TCCEE
T ss_pred EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc-CCCCHHHHHHHHh--hcCEE
Confidence 468999988776665544 588999999988876432 234566777788888776 4678888888887 78888
Q ss_pred EECccchhHHHhhh----hcCCCccEEEE
Q 004977 207 ICDSKQLKKLSAVS----SSLKTIKNVIY 231 (721)
Q Consensus 207 i~~~~~~~~~~~~~----~~~~~~~~ii~ 231 (721)
+..+.....+.... ..++.++.++.
T Consensus 247 ~~~P~~~~~l~~~~~~~~~~~~~lr~~~~ 275 (503)
T 4fuq_A 247 MGVPTFYTRLLQSPRLTKETTGHMRLFIS 275 (503)
T ss_dssp EECHHHHHHHHTCTTCSTTTTTTCCEEEE
T ss_pred EEHHHHHHHHHhCCCccccchhhcEEEEE
Confidence 88887766554432 12345666665
No 78
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=30.46 E-value=1.6e+02 Score=22.08 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=27.0
Q ss_pred chHHHHHHhcCcccceEEEEecCCCceEEEEEEcChH
Q 004977 596 LGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHK 632 (721)
Q Consensus 596 p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~ 632 (721)
..++++.|.+.|.|.+|..+.-+ ..+++-+.+++.+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~ 50 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLK 50 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHH
Confidence 37899999999999999887643 4566666666653
No 79
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=28.74 E-value=84 Score=33.63 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=63.5
Q ss_pred EEeeHHHH-HHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH--HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEV-FDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el-~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+ ...... .....++.++|++...++-...+- ..++..+..|+..+.+.+...++.+...+++.++.+
T Consensus 201 v~~sh~~l~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 201 TVHTHANLYWTAELY---AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEEHHHHHHHHHHT---CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEEhhHHHHHHHHH---hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 46888887 322211 111247899999998888765543 345778889999888877788999999999999999
Q ss_pred EEECccchhHHH
Q 004977 206 LICDSKQLKKLS 217 (721)
Q Consensus 206 vi~~~~~~~~~~ 217 (721)
++..+.....+.
T Consensus 278 ~~~~P~~~~~l~ 289 (529)
T 2v7b_A 278 FYGVPTLYANML 289 (529)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 999888765554
No 80
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=28.18 E-value=1.4e+02 Score=30.34 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=42.4
Q ss_pred HHHHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCC-----CCHHHHHHHHHhcC--ceEEEEC
Q 004977 144 ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS-----LGEDALIHSLNETQ--VTTLICD 209 (721)
Q Consensus 144 A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~--~~~vi~~ 209 (721)
...|...++++||.|.+-.+....+ ..++...|+.++.++.. ...+.+...+...+ .++|+..
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3345555789999998877765554 34566789887776543 46788888774434 6777644
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.71 E-value=1.6e+02 Score=35.67 Aligned_cols=103 Identities=8% Similarity=0.133 Sum_probs=74.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEccCcHhHH-HHHHHHHhcCCEEEEecC--CCCHHHHHHHHHhcCceE
Q 004977 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF-IAFQGCFRQSITVVTIYS--SLGEDALIHSLNETQVTT 205 (721)
Q Consensus 129 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~vpl~~--~~~~~~l~~~l~~~~~~~ 205 (721)
..+|.+.+... .......++.++|++..+.+-+.+.. .-+++.+..|+..+..++ ...++.+...+++.++++
T Consensus 625 V~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~ 700 (1304)
T 2vsq_A 625 NITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNV 700 (1304)
T ss_dssp EEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCE
T ss_pred EEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcE
Confidence 46888887532 22223458899999998888775543 447788889998887765 467899999999999999
Q ss_pred EEECccchhHHHhhh-hcCCCccEEEEecCC
Q 004977 206 LICDSKQLKKLSAVS-SSLKTIKNVIYFEND 235 (721)
Q Consensus 206 vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~ 235 (721)
+...+.....+.... ..++.++.+++-++.
T Consensus 701 ~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 701 MFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp EEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred EEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 999888776664432 234567777775543
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=25.95 E-value=3.1e+02 Score=27.06 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=51.9
Q ss_pred eeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004977 131 QTYGEVFDRACSFA---SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 131 ~Ty~el~~~v~~lA---~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
+++.|......... +.|...++++|++|.|+..-+.-.+++.++....|+.++.++.+ ++++ .+++..++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r~-~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDKL-NLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHHH-HHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHHh-hhhhhcCCeEEE
Confidence 57776544433322 23455689999999999987777777777777778777766543 3443 456677888777
Q ss_pred ECc
Q 004977 208 CDS 210 (721)
Q Consensus 208 ~~~ 210 (721)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 543
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=25.67 E-value=1.7e+02 Score=29.09 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=13.2
Q ss_pred CCCCCCEEEEEccCc
Q 004977 151 GHNVDTRAAILAETC 165 (721)
Q Consensus 151 Gv~~gd~V~i~~~n~ 165 (721)
-+++||+|+|++|.+
T Consensus 8 ~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCTTCEEEEECSSS
T ss_pred CCCCCCEEEEEeCCC
Confidence 478999999999985
No 84
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=24.20 E-value=5.1e+02 Score=25.34 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=36.9
Q ss_pred CCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEe--cC--CCCHHHHHHHHHhcCceEEEEC
Q 004977 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI--YS--SLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 152 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl--~~--~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
+++||.|.+..+.-..+.- ++...|+.++.+ ++ ....+++...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5788998887776554432 355677766555 33 3467889888887667777663
No 85
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.36 E-value=2e+02 Score=28.75 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEccCcHh------HHHHHHHHH-hcCCEEEEecCCC------------CHHHHHHHHHhcCceEEEECc
Q 004977 151 GHNVDTRAAILAETCVE------WFIAFQGCF-RQSITVVTIYSSL------------GEDALIHSLNETQVTTLICDS 210 (721)
Q Consensus 151 Gv~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 210 (721)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-.... ..+++...+.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998832 222222222 3676665431111 123455555566666666653
No 86
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.40 E-value=1.3e+02 Score=29.06 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCCCCCEEEEEccCc
Q 004977 141 CSFASGLVNFGHNVDTRAAILAETC 165 (721)
Q Consensus 141 ~~lA~~L~~~Gv~~gd~V~i~~~n~ 165 (721)
..|...|+++|+++||.|.|.+.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 3467789999999999999998754
No 87
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=22.05 E-value=3.6e+02 Score=26.43 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=44.7
Q ss_pred HHhCC-CCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc
Q 004977 147 LVNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (721)
Q Consensus 147 L~~~G-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (721)
+.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456654444455666667777778899987776655544455567888899999999864
No 88
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=22.03 E-value=2.4e+02 Score=27.61 Aligned_cols=75 Identities=12% Similarity=-0.038 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEc-cCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004977 131 QTYGEVFDRACSF---ASGLVNFGHNVDTRAAILA-ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 131 ~Ty~el~~~v~~l---A~~L~~~Gv~~gd~V~i~~-~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
+++.+........ -+.|...++++|++|.|.. .-..-..++.+| ...|+.++.+. +.++ ...+++.+++.+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 5777665433322 2344556999999999997 445565555555 46688766653 4455 456777888877
Q ss_pred EECc
Q 004977 207 ICDS 210 (721)
Q Consensus 207 i~~~ 210 (721)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 89
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.64 E-value=3.5e+02 Score=28.00 Aligned_cols=64 Identities=5% Similarity=-0.132 Sum_probs=47.5
Q ss_pred HHhCCC-CCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECc
Q 004977 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (721)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (721)
..+.|+ ++|....|....+-.-....++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 345664 6775555556667777778888999998877666665556667788999999999975
No 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.08 E-value=2.2e+02 Score=28.94 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCCCCCEEEEEccCcHh------HHHHHHHHH-hcCCEEEEecCCC------------CHHHHHHHHHhcCceEEEECc
Q 004977 151 GHNVDTRAAILAETCVE------WFIAFQGCF-RQSITVVTIYSSL------------GEDALIHSLNETQVTTLICDS 210 (721)
Q Consensus 151 Gv~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 210 (721)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-.... ..+++...+.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58999999999998742 222222222 4676666442211 123455555556666666643
No 91
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.55 E-value=2.9e+02 Score=27.75 Aligned_cols=61 Identities=18% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHhCCCCCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCC----CCHHHHHHHHHhc--CceEEEEC
Q 004977 146 GLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS----LGEDALIHSLNET--QVTTLICD 209 (721)
Q Consensus 146 ~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~--~~~~vi~~ 209 (721)
.+...++++||.|.+..+....+.. ++...|+.++.++.. ...+.+...++.. ++++|+..
T Consensus 63 ~~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 63 ALRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HHHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HHHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 3344467899999988887766543 344578877776543 4678888888764 46666554
No 92
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.41 E-value=2.2e+02 Score=28.33 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEccCcH
Q 004977 151 GHNVDTRAAILAETCV 166 (721)
Q Consensus 151 Gv~~gd~V~i~~~n~~ 166 (721)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999874
No 93
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=20.17 E-value=4.4e+02 Score=25.65 Aligned_cols=65 Identities=9% Similarity=-0.075 Sum_probs=43.8
Q ss_pred HHHhCCC-CCCCEEEEEccCcHhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc
Q 004977 146 GLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (721)
Q Consensus 146 ~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (721)
.+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 57 AAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 3445554 66766655 55555556666777899987776655544455566788899999999863
Done!