BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004981
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 60/250 (24%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYL-----KNQIQAEEKXXXXXX 410
+VYP + + ++ D++ L+ F+ND IIDFY+KYL +++
Sbjct: 22 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 81
Query: 411 XXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH 470
K +L +D ++S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 82 YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 141
Query: 471 P------------------------------------GDVASFKVEDLKRSE-------- 486
P S ED + +E
Sbjct: 142 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 201
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHKDTSEDVSSKFLNFRFIPLEL 541
K PCIL +DS+K A ++N VQ+ YL EW+ + K + + ++ P ++
Sbjct: 202 MCKRPCILILDSLKA--ASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVD--LCP-KV 256
Query: 542 PQQENSFDCG 551
P+Q+NS DCG
Sbjct: 257 PKQDNSSDCG 266
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 40/215 (18%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 14 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 73
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 74 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 121
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
++ +HW L V+ D ++ I + DS+ G + ++ YL +E
Sbjct: 122 IHLGVHWCLAVV------------DFRKKN----ITYYDSMGGINNEACRILLQYLKQE- 164
Query: 517 KERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCG 551
K E ++ + F E+PQQ N DCG
Sbjct: 165 -SIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCG 198
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
I++ DI L+ ++ND +I+FY+ L + + + KL
Sbjct: 34 ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLK--------- 84
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKV 488
+ V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 85 ---SGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK--- 126
Query: 489 PCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSF 548
C+ ++DS+ + ++ YL +E K K S+ ++ + P E+PQQ N
Sbjct: 127 -CLKYLDSMGQKGHRICEILLQYLQDESKT--KRNSDLNLLEWTHHSMKPHEIPQQLNGS 183
Query: 549 DCG 551
DCG
Sbjct: 184 DCG 186
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 40/215 (18%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 6 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 65
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 66 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 113
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
++ +HW L V+ D ++ I + DS+ G + ++ YL +E
Sbjct: 114 IHLGVHWCLAVV------------DFRKKN----ITYYDSMGGINNEACRILLQYLKQE- 156
Query: 517 KERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCG 551
K E ++ + F E+PQQ N DCG
Sbjct: 157 -SIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCG 190
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 40/215 (18%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
++ +HW L V+ D ++ I + DS+ G + ++ YL +E
Sbjct: 110 IHLGVHWCLAVV------------DFRKKN----ITYYDSMGGINNEACRILLQYLKQE- 152
Query: 517 KERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCG 551
K E ++ + F E+PQQ N DCG
Sbjct: 153 -SIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCG 186
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 30/185 (16%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPS 426
++I+++DI L ++ND II+FY+ L + + + KL
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLK------- 63
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
A + V++WT+KVD+F D + +P++ +HW L V+ D ++
Sbjct: 64 -----TAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV------------DFRKKN 106
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQEN 546
I + DS+ G + ++ YL +E ++ + E ++ + F E+PQQ N
Sbjct: 107 ----ITYYDSMGGINNEACRILLQYLKQESIDKKR--KEFDTNGWQLFSKKSQEIPQQMN 160
Query: 547 SFDCG 551
D G
Sbjct: 161 GSDSG 165
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 41/215 (19%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
++ +HW L V+ D ++ I + DS+ G + ++ YL +E
Sbjct: 110 IHLGVHWCLAVV------------DFRKKN----ITYYDSMGGINNEACRILLQYLKQES 153
Query: 517 KERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCG 551
++ + + + + + ++PQQ N DCG
Sbjct: 154 IDKKRKEFDTNGWQLFSKK---SQIPQQMNGSDCG 185
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
I++ DI L+ ++ND +I+FY+ L + + + KL
Sbjct: 40 ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLK--------- 90
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKV 488
+ V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 91 ---SGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK--- 132
Query: 489 PCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSF 548
C+ ++DS+ + ++ YL +E K K S+ ++ + P E+PQQ N
Sbjct: 133 -CLKYLDSMGQKGHRICEILLQYLQDESKT--KRNSDLNLLEWTHHSMKPHEIPQQLNGS 189
Query: 549 DCG 551
D G
Sbjct: 190 DSG 192
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 40/215 (18%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
++ +HW L V+ D ++ I + DS+ G + ++ YL +E
Sbjct: 110 IHLGVHWCLAVV------------DFRKKN----ITYYDSMGGINNEACRILLQYLKQE- 152
Query: 517 KERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCG 551
K E ++ + F E+PQQ N D G
Sbjct: 153 -SIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAG 186
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 52/197 (26%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLD 422
+ D + I+ RD L P ++NDTII+F++KY+ EK
Sbjct: 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYI-------EKSTPNTVAFNSFFY----- 76
Query: 423 KDPSSISDGKAAFLRVRKWTR--KVDIFGKDYIFIPVNFNL-HWSLIVICHPGDVASFKV 479
+++S+ + VR+W + K I D IF P+N N HW+L +I
Sbjct: 77 ---TNLSE--RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII----------- 120
Query: 480 EDLKRSEKVPCILHMDSIKG-----THAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNF 534
DLK+ I ++DS+ + A L +L Q Y+ EE K ED F
Sbjct: 121 -DLKKK----TIGYVDSLSNGPNAMSFAILTDL-QKYVMEESKHT---IGED-------F 164
Query: 535 RFIPLELPQQENSFDCG 551
I L+ PQQ N +DCG
Sbjct: 165 DLIHLDCPQQPNGYDCG 181
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 68/205 (33%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLD 422
+ D + I+ RD L P ++NDTII+F++KY++
Sbjct: 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST----------------------- 65
Query: 423 KDPSSISD--------GKAAFLRVRKWTR--KVDIFGKDYIFIPVNFNL-HWSLIVICHP 471
P++++ + + VR+W + K I D IF P+N N HW+L +I
Sbjct: 66 --PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII--- 120
Query: 472 GDVASFKVEDLKRSEKVPCILHMDSIKG-----THAGLKNLVQSYLCEEWKERHKDTSED 526
DLK+ I ++DS+ + A L +L Q Y+ EE K ED
Sbjct: 121 ---------DLKKKT----IGYVDSLSNGPNAMSFAILTDL-QKYVMEESKH---TIGED 163
Query: 527 VSSKFLNFRFIPLELPQQENSFDCG 551
F I L+ PQQ N +D G
Sbjct: 164 -------FDLIHLDCPQQPNGYDXG 181
>pdb|2BKQ|A Chain A, Nedd8 Protease
pdb|2BKQ|B Chain B, Nedd8 Protease
pdb|2BKQ|C Chain C, Nedd8 Protease
pdb|2BKQ|D Chain D, Nedd8 Protease
pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
Length = 212
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 45/190 (23%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
+ + D+ LL P +++ND II F +Y N Q + + +P+ I
Sbjct: 13 LRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDSSDHVSFISPEVTQFIKCTSNPAEI 71
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFN-------LHWSLIVICHPGDVASFKVED 481
A FL +D+ K +F+ +N N HWSL+V D SF
Sbjct: 72 ----AMFL------EPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQ--DKNSF---- 115
Query: 482 LKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEL 541
H DS +++ V L E + R D F+ +
Sbjct: 116 ----------FHYDSHSRSNSVHAKQVAEKL-EAFLGRKGD----------KLAFVEEKA 154
Query: 542 PQQENSFDCG 551
P Q+NS+DCG
Sbjct: 155 PAQQNSYDCG 164
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 45/190 (23%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
+ + D+ LL P +++ND II F +Y N Q + + +P+ I
Sbjct: 13 LRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDCSDHVSFISPEVTQFIKCTSNPAEI 71
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFN-------LHWSLIVICHPGDVASFKVED 481
A FL +D+ K +F+ +N N HWSL+V D SF
Sbjct: 72 ----AMFL------EPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQ--DKNSF---- 115
Query: 482 LKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEL 541
H DS +++ V L E + R D F+ +
Sbjct: 116 ----------FHYDSHSRSNSVHAKQVAEKL-EAFLGRKGD----------KLAFVEEKA 154
Query: 542 PQQENSFDCG 551
P Q+NS+DCG
Sbjct: 155 PAQQNSYDCG 164
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 309 NWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVG-QRRYFPNFDEPFEDVVYPEGDSDAV 367
+W L + + + + LWS + D+ +M G RY PN+ PF + + D A
Sbjct: 39 SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNY--PFPETLKAYCDLKAS 96
Query: 368 SISKRDIDLLQPDTFVNDTI 387
DI ++ P ++ I
Sbjct: 97 LEGVTDILIVVPSFAFHEVI 116
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 261 IVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSL 320
+VD QW R V +L V V D ++ G++ L S N E+L+K+ S+
Sbjct: 18 VVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSV 77
Query: 321 NAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSI 369
KY+ DH+ P+ VG + +F +PE VS+
Sbjct: 78 -GKYID----DHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSV 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,662,491
Number of Sequences: 62578
Number of extensions: 837693
Number of successful extensions: 1700
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 23
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)