Query 004981
Match_columns 721
No_of_seqs 255 out of 1101
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 3.7E-50 1.3E-54 427.7 24.2 245 356-610 21-318 (323)
2 2xph_A Sentrin-specific protea 100.0 1.4E-40 4.9E-45 341.0 19.5 182 366-577 43-224 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 1.2E-39 4.1E-44 331.6 23.0 182 366-577 31-212 (226)
4 2bkr_A Sentrin-specific protea 100.0 7.8E-39 2.7E-43 322.2 20.1 192 366-607 10-211 (212)
5 1euv_A ULP1 protease; SUMO hyd 100.0 7.6E-38 2.6E-42 317.5 19.9 180 365-604 31-217 (221)
6 2oix_A Xanthomonas outer prote 100.0 2.7E-33 9.3E-38 277.6 16.4 179 379-605 1-181 (186)
7 4ekf_A Adenain; alpha and beta 84.5 17 0.00058 35.9 13.6 125 460-606 52-179 (204)
8 3k8u_A Putative ABC transporte 4.2 5.8E+02 0.02 22.9 3.5 24 540-563 7-30 (156)
9 2lic_A Vitellogenin; lipid tra 4.2 4.4E+02 0.015 18.5 1.9 14 175-188 15-28 (35)
10 2cxa_A Leucyl/phenylalanyl-tRN 4.1 3.9E+02 0.013 27.5 2.3 19 378-396 124-142 (256)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-50 Score=427.68 Aligned_cols=245 Identities=36% Similarity=0.628 Sum_probs=196.4
Q ss_pred eeeccCC-CCCceEEehhhhhccCCCCcccHHHHHHHHHHHHH-HhhhhccCcEEEechHHHHHhhccCCC----CCCcc
Q 004981 356 DVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD----PSSIS 429 (721)
Q Consensus 356 ~vvYp~~-d~~~isLt~~DL~~L~~~~WLND~IIdFYl~yL~~-~~~~~~~~rv~~FnSfFy~kL~~~~k~----pss~~ 429 (721)
.++||+. +.+++.|+.+||.||.+++||||+|||||++||.. +..++...++|+||||||++|....+. ...++
T Consensus 21 ~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s 100 (323)
T 3eay_A 21 LIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLS 100 (323)
T ss_dssp EEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSC
T ss_pred eEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccch
Confidence 4789985 67899999999999999999999999999999964 444445679999999999999864321 11122
Q ss_pred hhhHHHHHHhhhhcccCCCCCCeEEEEeeccCceEEEEEecCCCccccc-----------------------cc------
Q 004981 430 DGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VE------ 480 (721)
Q Consensus 430 ~~~~~y~~VkrWtk~vdLFeKD~IfIPIN~nsHWsLlVI~~P~~~~~~~-----------------------d~------ 480 (721)
....+|.+|+|||+++|||+|||||||||.+.||+|+|||+|+...... ++
T Consensus 101 ~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 180 (323)
T 3eay_A 101 MAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTS 180 (323)
T ss_dssp HHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC------------------------------
T ss_pred hHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccccc
Confidence 3456899999999999999999999999999999999999997521100 00
Q ss_pred -------c----------cccCCCCCeEEEEcCCCCc-chhHHHHHHHHHHHHHHHhccCCcccccccccceeeecCCCC
Q 004981 481 -------D----------LKRSEKVPCILHMDSIKGT-HAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELP 542 (721)
Q Consensus 481 -------d----------~~~~~k~~~Il~fDSL~~~-~~~v~~~Lr~yL~~E~k~k~~~~~~d~s~~~~n~~~v~~~vP 542 (721)
+ .....|+|||+|||||++. +.++...|++||..||+.|++.. .++. ..++....+.+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~-~~f~--~~~~~~~~~~~P 257 (323)
T 3eay_A 181 TLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH-RQFS--KTNMVDLCPKVP 257 (323)
T ss_dssp -------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC-CCCC--TTTSCEECCBCC
T ss_pred ccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC-cCCC--HhHceeccCCCC
Confidence 0 0123578999999999986 56789999999999999886543 2332 123455567899
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCChhhhHHHHHHHHHHHHHHHHhcc
Q 004981 543 QQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRS 610 (721)
Q Consensus 543 QQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~~~~~~~~WF~p~ei~~kR~~I~~LI~eL~~~~s 610 (721)
||.|++|||||||+||++|+.++|.+|++. + ...+||++.+|+.||++|++||.+|..+++
T Consensus 258 ~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~-~------~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 258 KQDNSSDCGVYLLQYVESFFKDPIVNFELP-I------HLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHSCCCCCCSS-C------BCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcHHHHHHHHHHHHHhCCccccccc-c------ccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998742 2 125899999999999999999999998775
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.4e-40 Score=340.97 Aligned_cols=182 Identities=30% Similarity=0.598 Sum_probs=156.4
Q ss_pred ceEEehhhhhccCCCCcccHHHHHHHHHHHHHHhhhhccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhccc
Q 004981 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 445 (721)
Q Consensus 366 ~isLt~~DL~~L~~~~WLND~IIdFYl~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pss~~~~~~~y~~VkrWtk~v 445 (721)
++.|+.+|+.+|.+++||||+||+||++||.++......+++|+|+||||++|.. .+|.+|++|++++
T Consensus 43 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~------------~~~~~v~~w~~~~ 110 (238)
T 2xph_A 43 RLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKV 110 (238)
T ss_dssp TEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT------------TCHHHHTTTTTTC
T ss_pred CcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhh------------cccHHHHHHhccC
Confidence 7899999999999999999999999999999876555567899999999999975 3588999999999
Q ss_pred CCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004981 446 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE 525 (721)
Q Consensus 446 dLFeKD~IfIPIN~nsHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~~~v~~~Lr~yL~~E~k~k~~~~~~ 525 (721)
+||++++||||||.+.||+|+||+.+. ++|+|||||++.+....+.|++||..+|+.+.+...
T Consensus 111 ~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~- 173 (238)
T 2xph_A 111 DVFSVDILLVPIHLGVHWCLAVVDFRK----------------KNITYYDSMGGINNEACRILLQYLKQESIDKKRKEF- 173 (238)
T ss_dssp CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCC-
T ss_pred CcccCCEEEEcccCCCceEEEEEEccc----------------ceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 999999999999999999999999764 589999999999888888999999999987755321
Q ss_pred cccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004981 526 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 577 (721)
Q Consensus 526 d~s~~~~n~~~v~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~ 577 (721)
+. ..|........++|||.|++|||||||+||++|+.+.|.+|+|.+|+.+
T Consensus 174 ~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~ 224 (238)
T 2xph_A 174 DT-NGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYF 224 (238)
T ss_dssp CC-TTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHH
T ss_pred Cc-ccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHH
Confidence 21 2343222346799999999999999999999999999888877666543
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.2e-39 Score=331.58 Aligned_cols=182 Identities=27% Similarity=0.609 Sum_probs=156.2
Q ss_pred ceEEehhhhhccCCCCcccHHHHHHHHHHHHHHhhhhccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhccc
Q 004981 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 445 (721)
Q Consensus 366 ~isLt~~DL~~L~~~~WLND~IIdFYl~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pss~~~~~~~y~~VkrWtk~v 445 (721)
++.|+.+|+.+|.+++||||+||+||++||.++..+...+++|+||||||.+|.. .+|.+|++|++++
T Consensus 31 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~------------~~~~~v~~w~~~~ 98 (226)
T 1th0_A 31 KLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKGV 98 (226)
T ss_dssp TEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTTC
T ss_pred CeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhh------------cccHHHHHHhhcC
Confidence 6899999999999999999999999999998876655678999999999999974 4588999999999
Q ss_pred CCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004981 446 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE 525 (721)
Q Consensus 446 dLFeKD~IfIPIN~nsHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~~~v~~~Lr~yL~~E~k~k~~~~~~ 525 (721)
+||++++||||||.+.||+|+||+.+. ++|+|||||++.+..+.+.|++||..+++.+.+...
T Consensus 99 ~l~~~~~i~iPin~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~- 161 (226)
T 1th0_A 99 NLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL- 161 (226)
T ss_dssp CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC-
T ss_pred CcccCCEEEEeEEeCcEEEEEEEEcCC----------------CceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCC-
Confidence 999999999999999999999999753 599999999999888889999999999987755321
Q ss_pred cccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004981 526 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 577 (721)
Q Consensus 526 d~s~~~~n~~~v~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~ 577 (721)
+. ..|....+.+.++|||.|++|||||||+||++++.+.|..|+|.+|+.+
T Consensus 162 ~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~ 212 (226)
T 1th0_A 162 NL-LEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLF 212 (226)
T ss_dssp CG-GGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHH
T ss_pred Cc-ccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHH
Confidence 11 2343222345799999999999999999999999998888877766543
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=7.8e-39 Score=322.23 Aligned_cols=192 Identities=22% Similarity=0.381 Sum_probs=155.1
Q ss_pred ceEEehhhhhccCCCCcccHHHHHHHHHHHHHHhhhhccCcEEEec---hHHHHHhhccCCCCCCcchhhHHHHHHhhhh
Q 004981 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFN---SFFFRKLADLDKDPSSISDGKAAFLRVRKWT 442 (721)
Q Consensus 366 ~isLt~~DL~~L~~~~WLND~IIdFYl~yL~~~~~~~~~~rv~~Fn---SfFy~kL~~~~k~pss~~~~~~~y~~VkrWt 442 (721)
++.|+.+|+.+|.+++||||+||+||++||.++..++..+++|||+ ||||..+. .|.+|++|+
T Consensus 10 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~--------------~~~~v~~~~ 75 (212)
T 2bkr_A 10 DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS--------------NPAEIAMFL 75 (212)
T ss_dssp TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC--------------CHHHHHHHH
T ss_pred CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC--------------CHHHHHHHh
Confidence 5899999999999999999999999999999987655578899999 89995553 256899999
Q ss_pred cccCCCCCCeEEEEeec-------cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHH
Q 004981 443 RKVDIFGKDYIFIPVNF-------NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEE 515 (721)
Q Consensus 443 k~vdLFeKD~IfIPIN~-------nsHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~~~v~~~Lr~yL~~E 515 (721)
+++++|++++||||||. +.||+|+||+.+. ++|+|||||++.+....+.+.++|...
T Consensus 76 ~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~----------------~~i~~~DSl~~~n~~~~~~l~~~l~~~ 139 (212)
T 2bkr_A 76 EPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK----------------NSFFHYDSHSRSNSVHAKQVAEKLEAF 139 (212)
T ss_dssp GGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG----------------TEEEEECSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC----------------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999995 7999999999864 589999999998765544455555443
Q ss_pred HHHhccCCcccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCChhhhHHHH
Q 004981 516 WKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKR 595 (721)
Q Consensus 516 ~k~k~~~~~~d~s~~~~n~~~v~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~~~~~~~~WF~p~ei~~kR 595 (721)
...+.. .+.+...++|||.|++|||||||+||++++.+.... .. +....||++.+++.+|
T Consensus 140 l~~~~~-----------~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~-~~--------~~~~~~~~~~~i~~~R 199 (212)
T 2bkr_A 140 LGRKGD-----------KLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ-QT--------ESLLQLLTPAYITKKR 199 (212)
T ss_dssp HSCTTC-----------CCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC-CC--------CCHHHHCCHHHHHHHH
T ss_pred hCCccc-----------cceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc-Cc--------ccccccCCHHHHHHHH
Confidence 322111 123456789999999999999999999999874110 00 1124689999999999
Q ss_pred HHHHHHHHHHHH
Q 004981 596 SLIQKLISELLR 607 (721)
Q Consensus 596 ~~I~~LI~eL~~ 607 (721)
++|+++|.+|.+
T Consensus 200 ~~i~~lI~~L~~ 211 (212)
T 2bkr_A 200 GEWKDLIATLAK 211 (212)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999964
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=7.6e-38 Score=317.48 Aligned_cols=180 Identities=35% Similarity=0.599 Sum_probs=151.3
Q ss_pred CceEEehhhhhccCCCCcccHHHHHHHHHHHHHHhhhhccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhc-
Q 004981 365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR- 443 (721)
Q Consensus 365 ~~isLt~~DL~~L~~~~WLND~IIdFYl~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pss~~~~~~~y~~VkrWtk- 443 (721)
+++.|+.+|+.+|.+++||||+||+||++||.+. .+++|+|+||||.+|.. .+|.+|+||++
T Consensus 31 ~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~-----~~~~~~f~s~f~~~l~~------------~~~~~v~rw~~~ 93 (221)
T 1euv_A 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS-----TPNTVAFNSFFYTNLSE------------RGYQGVRRWMKR 93 (221)
T ss_dssp TTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHH-----STTEEECCTHHHHHHHH------------HTGGGTTTTTGG
T ss_pred CCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhc-----CCCeEEEEcHHHHHhhh------------hccHHHHHHHHh
Confidence 4799999999999999999999999999999765 35799999999999974 46889999997
Q ss_pred -ccCCCCCCeEEEEeecc-CceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcc-h---hHHHHHHHHHHHHHH
Q 004981 444 -KVDIFGKDYIFIPVNFN-LHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTH-A---GLKNLVQSYLCEEWK 517 (721)
Q Consensus 444 -~vdLFeKD~IfIPIN~n-sHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~-~---~v~~~Lr~yL~~E~k 517 (721)
++++|++++||||||.+ .||+|+||+.+. ++|+|||||++.+ . .+.+.|+.||..+++
T Consensus 94 ~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~ 157 (221)
T 1euv_A 94 KKTQIDKLDKIFTPINLNQSHWALGIIDLKK----------------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK 157 (221)
T ss_dssp GTSCGGGCSEEEEEEEETTTEEEEEEEETTT----------------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccCCEEEEEEEcCCCeEEEEEEEcCC----------------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 68999999999999985 999999999865 4899999998653 2 467788999998876
Q ss_pred HhccCCcccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCChhhhHHHHHH
Q 004981 518 ERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSL 597 (721)
Q Consensus 518 ~k~~~~~~d~s~~~~n~~~v~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~~~~~~~~WF~p~ei~~kR~~ 597 (721)
.+.+. + +++...++|||.|++|||||||+||++++.+.|+.| ++.++..+|..
T Consensus 158 ~~~~~-------~---~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f-----------------~~~d~~~~R~~ 210 (221)
T 1euv_A 158 HTIGE-------D---FDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDF-----------------DYKDAIRMRRF 210 (221)
T ss_dssp SSSCT-------T---CEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCC-----------------CHHHHHHHHHH
T ss_pred HhcCC-------C---ceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCc-----------------CHHHHHHHHHH
Confidence 54321 1 234567999999999999999999999999877655 45566678999
Q ss_pred HHHHHHH
Q 004981 598 IQKLISE 604 (721)
Q Consensus 598 I~~LI~e 604 (721)
|+.+|+.
T Consensus 211 i~~~Il~ 217 (221)
T 1euv_A 211 IAHLILT 217 (221)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888864
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=2.7e-33 Score=277.58 Aligned_cols=179 Identities=18% Similarity=0.274 Sum_probs=129.9
Q ss_pred CCCcccHHHHHHHHHHHHHHhhhhcc-CcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhcccCCCCCCeEEEEe
Q 004981 379 PDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPV 457 (721)
Q Consensus 379 ~~~WLND~IIdFYl~yL~~~~~~~~~-~rv~~FnSfFy~kL~~~~k~pss~~~~~~~y~~VkrWtk~vdLFeKD~IfIPI 457 (721)
+++||||+||+||++||.++..+... .++|||+|+++..+... +...+.++++|++..++ |++|||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~---------~~~~~~~~~~~~~~~~~--~~~i~iPi 69 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSA---------DPDQQARAQRLLAGDDI--PPIVFLPI 69 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCS---------SHHHHHHHHHHHHSTTS--CSEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhC---------CHHHHHHHHHHcccccc--cCEEEEEE
Confidence 47899999999999999998754333 56999998877666432 12457888899887666 99999999
Q ss_pred ec-cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcccccccccceee
Q 004981 458 NF-NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRF 536 (721)
Q Consensus 458 N~-nsHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~~~v~~~Lr~yL~~E~k~k~~~~~~d~s~~~~n~~~ 536 (721)
|. +.||+|+||+.+.+ ..|+|+|||||++.+.. ...|...|... .+.. .. ++
T Consensus 70 n~~~~HWsLlvi~~~~~-------------~~~~~~~~DSl~~~~~~-~~~l~~~l~~~----l~~~-------~~--~~ 122 (186)
T 2oix_A 70 NQPNAHWSLLVVDRRNK-------------DAVAAYHYDSMAQKDPQ-QRYLADMAAYH----LGLD-------YQ--QT 122 (186)
T ss_dssp EETTTEEEEEEEECSST-------------TSCEEEEECCCSSCCHH-HHHHHHHHHHH----TTCC-------GG--GC
T ss_pred eCCCCccEEEEEECCCC-------------eeeeeEEEcCCCCCCHH-HHHHHHHHHHH----hCCC-------cc--cc
Confidence 98 89999999998764 23677999999986643 22222333221 1110 00 23
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCChhhhHHHHHHHHHHHHHH
Q 004981 537 IPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISEL 605 (721)
Q Consensus 537 v~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~dI~~~~~~~~~~WF~p~ei~~kR~~I~~LI~eL 605 (721)
...++|||.||+|||||||+||+++++.... .. .....||++.+++.+|+.|+++|.++
T Consensus 123 ~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~-------~~---~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 123 HEMPIAIQSDGYSAGDHVLTGIEVLAHRVLD-------GT---FDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp EEECBCCCC--CCHHHHHHHHHHHHHHHHHH-------TC---TTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-------cC---ccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999975200 00 12347899999999999999999876
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=84.46 E-value=17 Score=35.94 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=68.3
Q ss_pred cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcccc-cccccceeee-
Q 004981 460 NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDV-SSKFLNFRFI- 537 (721)
Q Consensus 460 nsHWsLlVI~~P~~~~~~~d~d~~~~~k~~~Il~fDSL~~~~~~v~~~Lr~yL~~E~k~k~~~~~~d~-s~~~~n~~~v- 537 (721)
+.||.-...+ |. ..+++.||.+|-+..++.+ +-.-+|..-.+... + ++.-.=++.+
T Consensus 52 GvHWiA~Aw~-P~---------------s~~~YmFDPfG~sd~~L~q----iY~F~Y~~llkRSA--L~sspdRCv~Lvk 109 (204)
T 4ekf_A 52 GVHWMAFAWN-PR---------------SKTCYLFEPFGFSDQRLKQ----VYQFEYESLLRRSA--IASSPDRCITLEK 109 (204)
T ss_dssp CCCEEEEEEE-TT---------------TTEEEEECTBTTCSHHHHH----HHHHHHHHHHHHHC--C--------EEEE
T ss_pred ceeEEEeEec-CC---------------cceEEEeCCCCCCHHHHHH----HhhhhHHHHHHHHh--hcCCCCceeEEEe
Confidence 4899888775 32 3589999999998776433 22334432111110 1 0000001222
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhh-hhhhcccccCCCCChhhhHHHHHHHHHHHHHHH
Q 004981 538 PLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLK-LKKLSSFLNVDWFPPGEASLKRSLIQKLISELL 606 (721)
Q Consensus 538 ~~~vPQQ~Ng~DCGVFVL~yaE~fl~~~p~~Ftq~d-I~~~~~~~~~~WF~p~ei~~kR~~I~~LI~eL~ 606 (721)
..+.-|=.++--||+|-+.|+.+|..-+..-+.... |.-+....+.....|......|..-.+|-.=|.
T Consensus 110 stqsVQcp~SaACGLFC~lFL~aF~~~p~~pm~~Np~md~~~Gvp~~~l~~P~~~~~lh~NQe~LY~fl~ 179 (204)
T 4ekf_A 110 STQSVQGPNSAAAGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLE 179 (204)
T ss_dssp CCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCSSSSTTGGGCCCBCGGGTTCGGGHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCchhHHHHHHHHHHHHHhCCCCCCCCCCccccccCcCcccccCCcchHHHHHhHHHHHHHHH
Confidence 234556678999999999999999986432232111 222233334455677776666666544443333
No 8
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=4.23 E-value=5.8e+02 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHc
Q 004981 540 ELPQQENSFDCGLFLLHYLELFLA 563 (721)
Q Consensus 540 ~vPQQ~Ng~DCGVFVL~yaE~fl~ 563 (721)
.+-+|.+..|||+-.|.++-.+..
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g 30 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYG 30 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTT
T ss_pred ceEECCCCCCHHHHHHHHHHHHhC
Confidence 344687889999999998877654
No 9
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=4.20 E-value=4.4e+02 Score=18.52 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCC
Q 004981 175 GSSSSPASDIAPNG 188 (721)
Q Consensus 175 ~s~~s~~s~~~~~~ 188 (721)
|.++|+.|.++||+
T Consensus 15 stssssissseend 28 (35)
T 2lic_A 15 STSSSSISSSEEND 28 (35)
T ss_dssp CSCSSCCSTTCSCS
T ss_pred cccccccccccccc
Confidence 44555566677764
No 10
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=4.13 E-value=3.9e+02 Score=27.48 Aligned_cols=19 Identities=11% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCCcccHHHHHHHHHHHH
Q 004981 378 QPDTFVNDTIIDFYIKYLK 396 (721)
Q Consensus 378 ~~~~WLND~IIdFYl~yL~ 396 (721)
+++.|+++.||+.|.++-.
T Consensus 124 ~~gTWI~~ei~~aY~~LH~ 142 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHE 142 (256)
T ss_dssp --CTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 5789999999999998744
Done!