BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004983
(721 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/545 (46%), Positives = 358/545 (65%), Gaps = 44/545 (8%)
Query: 180 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 239
RW+R YS +R ++IWGFVLT +++ WLN +K+SY GG TEEK RR+ AKW++E+
Sbjct: 33 RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91
Query: 240 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 299
+L LGPTFIK+GQ FSTR D+ EYV+ELS+LQD+VP F E A I+EEELG P+ +
Sbjct: 92 LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151
Query: 300 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 358
+ FD P+AAASLGQVH+A+L GE+VVVKVQRPGLK LF IDL L+ IA+Y Q P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210
Query: 359 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 418
K G RDW IY+EC +L+QE DY +E +A+ F NF+ D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269
Query: 419 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 478
LT+EY+PGIKI+ +L+ G++RK L + +YL Q+L+HGFFHADPHPGN+AV
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328
Query: 479 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 538
G LIFYDFGMMG I+P+ + L++ +G+ EK+A++++ ++V +G L T D +RR+
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRS 388
Query: 539 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 598
QF L++F + KP ++Q + I +DL IA DQP
Sbjct: 389 VQFLLDNFMD-------------------KPF--------EEQSITKISDDLYEIAYDQP 421
Query: 599 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK----FREAGVEVILKDF 654
FRFPATFTFV+RAFS L+G+GKGLDP F+ +A+P+A++++ F AG +
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAG------NI 475
Query: 655 RNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVG 714
+ RQ N R ++ +++ RL++GD+++RVR+ E++R +R+ +Q
Sbjct: 476 MDELGRQAVQVGNSALGLPR--RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTN 533
Query: 715 SVSYS 719
V ++
Sbjct: 534 YVLFT 538
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 345 bits (886), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 189/527 (35%), Positives = 306/527 (58%), Gaps = 49/527 (9%)
Query: 199 FVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRV 258
F+L F +W +T + RR A+WL + +L LGPTFIKIGQ STR
Sbjct: 33 FLLFVFFLSW---------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRA 83
Query: 259 DILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHR 318
DI+ EY++ ++LQD+VPPF S A++++E+EL +D++F++F+V P+A+ASLGQVHR
Sbjct: 84 DIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHR 143
Query: 319 ARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECA 375
A L GE VVVKVQRPGL L ++D + L ++ P + K + AIY E
Sbjct: 144 AVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFF 203
Query: 376 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL 435
S+L+ EIDY E NAE F NF D V+VP I+W+YTT +LT+EY+PGIK++ Q+L
Sbjct: 204 SLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQAL 263
Query: 436 DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP 495
+ G++ + + + +YL+Q+L GFF +DPHPGN+AVD + G LIFYDFG M +
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKI 321
Query: 496 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRK 555
++ +++ F+ + KD ++VL+A++ MG++ P GD + ++R F L++F +
Sbjct: 322 IAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------- 374
Query: 556 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 615
KP+ I+ Q +GE++ A+ QPFR P TF++++ S L
Sbjct: 375 ------------KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTL 414
Query: 616 DGIGKGLDPRFDITEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 673
DGI + LDPR+++ ++P+ ++ + + + + +L+ + A L R +
Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSR 468
Query: 674 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSVSYSG 720
+ L E +LE+G+L+ R+ E +R +++ K++ +G
Sbjct: 469 NQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTG 515
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 293 bits (750), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 185/538 (34%), Positives = 283/538 (52%), Gaps = 65/538 (12%)
Query: 143 KKKVEEIGKEDAWFKKSGQEKVESVNLWYQVSVAPGGRWSRFKTYSTIQRTLEIWGFVLT 202
K +E++G F +S + + + +Y R + + R + I +L
Sbjct: 34 KSHLEDLGPVSDMFPESWEYHPDLIMEFY-----------RKRPLQVLGRLINILFPLLR 82
Query: 203 FVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILA 262
F+ W RG ++ V R KA+ L+E + LGPT+IK+GQ STR D++
Sbjct: 83 FILGIWWEK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVP 133
Query: 263 QEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK 322
++DEL+ LQDQ+P FP+E A +EEELGAP ++++ EPIAAASLGQV++ +LK
Sbjct: 134 PVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLK 193
Query: 323 -GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE 381
GE V VKVQRP L +D+ +R ++ + ++ + D VAI DE AS +++E
Sbjct: 194 TGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEE 250
Query: 382 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD 441
++Y QEA N E FA + + + VP+I+W+YT ++LTME+V GIK+ I+++ G+D
Sbjct: 251 MNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGID 310
Query: 442 RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL 501
L V+ L Q+L HGFFHADPHPGN+ + GRL + DFGMM +I P R GL
Sbjct: 311 ATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGL 368
Query: 502 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREIT 560
+EA + +D D + + V++ L P D + Q F N+ +A
Sbjct: 369 IEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA--------- 419
Query: 561 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 620
EL FK +I + + A+ + PFR PA + ++R+ L+GI
Sbjct: 420 --ELNFK-----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAI 460
Query: 621 GLDPRFDITEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 672
G+DP F + A PY + L + R + E++ K+ RW+R NL R A
Sbjct: 461 GIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/492 (33%), Positives = 252/492 (51%), Gaps = 53/492 (10%)
Query: 179 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 235
+ R + + + R LE+ +GF LT + Q Y+ E+
Sbjct: 25 ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E + +LGPTFIK+GQ STR D++ +++++EL +LQDQ+PPF ++ A ++EE+LG
Sbjct: 73 LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132
Query: 296 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+D+ + P+AAASLGQV+RA L GEEV VKVQRP L+ +DL +R+ A+
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ P + G D I DE L++EIDY E NAE FA NF VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
++LT+E++ G K+ + G+D + R V S L Q+L HGFFHADPHPGN+
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310
Query: 475 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA 534
GR+ + DFGMM + P +E + + + KD + + + +G L P D T
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368
Query: 535 VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIA 594
+ + N F + + Q+ FK I +D +
Sbjct: 369 IIPALE---NVFGSAIGQ-------SVQDFNFK-----------------TITDDFSELM 401
Query: 595 ADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVE 648
D PFR PA F ++R+ +G+ LDP F I E+A PY L + R ++
Sbjct: 402 YDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLID 461
Query: 649 VILKDFRNRWDR 660
V+ K+ + +W R
Sbjct: 462 VLFKNGKFQWQR 473
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 256 bits (653), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 256/499 (51%), Gaps = 55/499 (11%)
Query: 185 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 244
+ + ++R+LEI G + F + ++ ++ + M + LRR RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158
Query: 245 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 304
PTF+K+GQ STR D+ +Y++EL+ELQD +P FP A + +E EL L+ +F
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218
Query: 305 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 362
EPIAAASLGQV++A+L+ G+ V VKVQRPG+++ +D +R + + + K D
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275
Query: 363 AKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 422
D + + DE A +YQE++Y QEA NA F + D V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335
Query: 423 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 481
+V G K+N +++ G+ L ++ L Q+L +GFFHADPHPGN +A D G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392
Query: 482 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF 541
L F DFGMM R ++ + +D + + + + L P D T + +
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452
Query: 542 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 601
F F++ L T EL FK + + L A+ PF
Sbjct: 453 F---FDDAL-------NYTVSELNFK-----------------TLVDGLGAVFYQYPFNV 485
Query: 602 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY-AMELLK-----FREAGVEVILKDFR 655
P + ++R+ +VL+G+ DP F + + PY A LL R+A +E++ KD +
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGK 545
Query: 656 NRWDRQTRAFYNLFRQADR 674
RW+R NL +Q +
Sbjct: 546 FRWNR----LENLLQQGSK 560
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 242/489 (49%), Gaps = 52/489 (10%)
Query: 182 SRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 240
SR S + R +EI W L + + + + G EE R A+ L+ +
Sbjct: 125 SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRDEEVVPFR----ARQLRNLL 174
Query: 241 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 300
LGP+FIK GQ + R DI+ ++Y++EL LQD VPPFP+E A +I+EEELG PL+++F
Sbjct: 175 CNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIF 234
Query: 301 ERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 358
+ + IAAASLGQV+RA L+ GE+V +KVQRP ++ + DL R +A +L
Sbjct: 235 SKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSL 294
Query: 359 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 418
+ G + I DE L +E+DYT EA N E F NFKD VK+P ++ P++
Sbjct: 295 QKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRV 352
Query: 419 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI-AVDDV 477
L ME++ GI+ Q++ + G+D V + L Q+L G FH DPHPGNI A+ D
Sbjct: 353 LVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQD- 411
Query: 478 NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR 537
GR+ + DFG + +S ++ L++A +D ++ ++G L D + +
Sbjct: 412 --GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVP 469
Query: 538 TAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQ 597
+ + + A R +T Q F K + D
Sbjct: 470 ALEAIWQNSAGKGLADFNFRSVTGQ---FNK------------------------LVYDF 502
Query: 598 PFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVEVIL 651
P R P F+ V+R+ +GI L P F E+A PY + L RE ++V+
Sbjct: 503 PIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLF 562
Query: 652 KDFRNRWDR 660
KD +W R
Sbjct: 563 KDGVFQWKR 571
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 230/429 (53%), Gaps = 48/429 (11%)
Query: 214 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 268
FSY G+ + L R K A L++ ++ LGP ++KI Q S+R D++ Y+DE
Sbjct: 96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155
Query: 269 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 326
LS LQDQ+ PF +E A +++E+ELG P+D++F EP+AAASLGQV++ARL+ G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215
Query: 327 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 386
VKVQRPG++ +D LR IA ++ K+ D A+ DE A+ L++E+DY
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271
Query: 387 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 446
EA N F + + V VP ++ EY+T ++L ME+V G K+N + L L
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323
Query: 447 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 506
V Q+L +GF+HADPHPGN G+L + DFGMMG P +R+G +EA
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381
Query: 507 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 566
+ +D + + V +G+L PT + +AV + + F++ A R R I+ +L
Sbjct: 382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL-- 434
Query: 567 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 626
L +G+ + FR P F+ V+R+ +VL+GI G+ P +
Sbjct: 435 ----------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNY 474
Query: 627 DITEIAKPY 635
+ P+
Sbjct: 475 KVLGSTYPW 483
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 223/402 (55%), Gaps = 43/402 (10%)
Query: 243 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 302
LGP F+K GQ STR D+L EY DEL+ LQD+VPPF + A +VE LG ++++F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 303 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 356
FD++P+A+AS+ QVH+A L+ G EV VKV RPG+ + + DL +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 357 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 416
+DG + + E L+ E+D EAANA NFK D + VP +F++Y++
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236
Query: 417 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 476
++LT+E++ GI + +I+ L E GVD ++L R+ VE + Q+ HGFFHAD HPGNI V
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294
Query: 477 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 536
GR I DFG++GS++ + L F + +D +V A ++ G VP DT A
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA-- 350
Query: 537 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI-AA 595
EE AA R T E F+KPLS+ + G LL +
Sbjct: 351 ----------EELEAAVR-----TVCEPIFEKPLSE-----------ISFGMVLLRLFET 384
Query: 596 DQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 635
+ F V+ ++L+ G+G+ LDP D+ + AKP+
Sbjct: 385 SRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 226/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L + DEL++LQDQVPPF S A+ +VE LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
++WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ PT +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 228/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ P +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 227/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L + +EL++LQDQVPPF S A+ +VE+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
++WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ PT +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 225/415 (54%), Gaps = 52/415 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L + EL++LQDQVPPF S A++I+E+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+D +F+ F+ P+A+AS+ QVH A LK G++V VKV RP + + D DL LR IA
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
++WEY T +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 468 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V D + GR I DFG++G++S + L + F +++D +V ++ G
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 526 LVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKK 580
+ T +A+R + +F + ++ Q R +T S+ +E +
Sbjct: 347 VPATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQP 397
Query: 581 QRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
Q L + + +L + +G+G+ LDP D+ + AKPY
Sbjct: 398 Q-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY 429
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 213/403 (52%), Gaps = 32/403 (7%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKK 118
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDVEP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
K+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 KV--SADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
VN + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 297 STVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP---- 351
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ LN FE AA R T E F+KPL K + L
Sbjct: 352 ------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 389
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
A + + ++G+G+ L P D+ A+P+
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 207/396 (52%), Gaps = 32/396 (8%)
Query: 243 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 302
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARICDVFSR 125
Query: 303 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 361
FD +P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERV--SAD 183
Query: 362 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 421
V + + +Y E+D +EAANA NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 422 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 479
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 480 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 539
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 540 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 599
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 600 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPY 432
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 231/463 (49%), Gaps = 51/463 (11%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D + V I + +Y E+D +EAANA NF+D + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYWDLC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
V + I D G++GS++ ++ L + +++D +V Q + G VP
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVPANTK 356
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
+N FE AA R T E F+KPL K + L
Sbjct: 357 ----------VNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ AKPY ++ R + V
Sbjct: 391 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERWMRDRYSPKAV--- 447
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLA----ETIQRLEQGDLK 691
F NL Q +++ LA + ++RL Q L
Sbjct: 448 ------------FGNLHSQVEQLPHLAGMTRDLLERLSQPHLH 478
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 233/462 (50%), Gaps = 51/462 (11%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
V + I D G++GS++ ++ L +++D +V Q + G VP
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
AQ +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AQTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ AKP+ ++ R + VI
Sbjct: 391 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLERWMRERMSPKAVI-- 448
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLAET----IQRLEQGDL 690
NL+ QA+++ LA+ ++RL Q L
Sbjct: 449 -------------GNLYNQAEQLPHLADMTRDLLERLSQPHL 477
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 206/396 (52%), Gaps = 32/396 (8%)
Query: 243 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 302
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARICDVFSR 125
Query: 303 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 361
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERV--SAD 183
Query: 362 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 421
V + + +Y E+D +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 422 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 479
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 480 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 539
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 540 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 599
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 600 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPY 432
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 232/467 (49%), Gaps = 59/467 (12%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++E +LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 179 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 236
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+ + + +L + D K L VE + Q+ H FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGNIFV 296
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
V + I D G++GS++ ++ L +++D +V + + G VP
Sbjct: 297 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSG-WVP---- 351
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A +N FE AA R T E F+KPL K + L
Sbjct: 352 ------AHTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 389
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ AKP
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKP------------------ 431
Query: 653 DFRNRWDRQTRA----FYNLFRQADRVEKLA----ETIQRLEQGDLK 691
F RW R+ + F NL+ QA+++ LA + ++RL Q L
Sbjct: 432 -FLERWMRERYSPKAMFGNLYSQAEQLPHLAGMTRDLLERLSQPHLH 477
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 219 bits (557), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 212/403 (52%), Gaps = 32/403 (7%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V+++E +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQLGKK 118
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ DVF RFD+EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
K+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 KL--SADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
V + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 297 STVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP---- 351
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ LN FE AA R T E F+KPL K + L
Sbjct: 352 ------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 389
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
A + + ++G+G+ L P D+ A+P+
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 207/396 (52%), Gaps = 32/396 (8%)
Query: 243 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 302
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A++++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARICDVFSR 125
Query: 303 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 361
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILARMAERV--SAD 183
Query: 362 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 421
V + + +Y E+D +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 422 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 479
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWS 303
Query: 480 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 539
+ I D G++GS++P ++ L + +++D +V Q + G VP A
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------A 352
Query: 540 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPF 599
+ LN FE AA R T E F+KPL K + L A
Sbjct: 353 ETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQTARRFNM 396
Query: 600 RFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
+ + ++G+G+ L P D+ A+PY
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPY 432
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 217/418 (51%), Gaps = 58/418 (13%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ +LGP F+K GQ STR D+L + DEL++LQD+VPPF + A +IVE LG P
Sbjct: 53 LRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
L +F RFD P+A+AS+ QVH A L+ G EV VKV RPG+ + D DL +R +A
Sbjct: 113 LSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVA 172
Query: 351 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 407
+++K+ +DG + R+ VA +D+ L+ E+D +EAANA NF + + VP
Sbjct: 173 TWMEKL--WADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLRRNFAKSELLLVP 227
Query: 408 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 467
+FW++ T ++ ME + G++++ L GVD +L R VE + Q+ GFFHAD
Sbjct: 228 EVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADM 287
Query: 468 HPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 525
HPGNI V + GR I DFG++G++S + L + F +++D +V V+ G
Sbjct: 288 HPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGW 347
Query: 526 LVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAA 585
+ T V EE A R E F +PL
Sbjct: 348 ---APEETRV-----------EELEGAIR-----ACCEPYFDRPL--------------- 373
Query: 586 IGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPY 635
GE L + + F+ F V+ VL +G+G+ LDP D+ + AKP+
Sbjct: 374 -GEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPF 430
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 210/407 (51%), Gaps = 36/407 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E++ RLGP F+K GQ STR D+L + DEL+ LQD+VPPFPS A++ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 350
+ DVF +FD PIA+AS+ QVH A ++ + EV VKV RP ++ + + DL + ++A
Sbjct: 113 VGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMA 172
Query: 351 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 410
+++K+ P DG + + E L+ E+D +EAANA N ++ V +P +F
Sbjct: 173 GWVEKLSP--DGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMF 230
Query: 411 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 470
W++ P+++ ME + G+ I ++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 471 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 528
NI V GR I DFG++G+++ + +E L + F + +D +V + ++ G VP
Sbjct: 291 NIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESG-WVP 349
Query: 529 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 588
G +E A R T E F +PL K+ L +
Sbjct: 350 EG-------------TRIDELEGAIR-----TVCEPYFDRPL--------KEISLGMVLM 383
Query: 589 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPF 430
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 212/403 (52%), Gaps = 32/403 (7%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ ++ ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKK 118
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDV+P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFILARAAE 178
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 RF--SADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
VN + I D G++GS++P ++ L + +++D +V Q + G VP
Sbjct: 297 STVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP---- 351
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ LN FE AA R T E F+KPL K + L
Sbjct: 352 ------AETKLNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 389
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
A + + ++G+G+ L P D+ A+P+
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPF 432
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 216/406 (53%), Gaps = 38/406 (9%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ RLGP F+K GQ STR D++ + +EL++LQD+VPPFPS+ + + V + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+++VF FD +P+A+AS+ QVH L G EV VKV RP + ++ + DL LRV A +L+
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
++ P DG + + E + L+ E+D +EAANA N +D + +P + W+ +
Sbjct: 173 RLSP--DGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLS 230
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
+ ++L ME + G+ I++I++L G+D +L R V + Q+ GFFHAD HPGNI V
Sbjct: 231 SAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMV 290
Query: 475 DDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
GR I DFG++G++ +E L + F + +D +V + ++ G VP
Sbjct: 291 STAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESG-WVPAS-- 347
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
+E A R E F +PL ++G+ LL
Sbjct: 348 -----------TRVDELEGAVR-----AVCEPHFDRPLKD-----------ISLGQVLLR 380
Query: 593 I-AADQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 635
+ + F V+ ++L+ G+G+ LDP D+ + AKP+
Sbjct: 381 LFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPF 426
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 216/411 (52%), Gaps = 48/411 (11%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L ++ DEL+ LQD+VPPF + +V+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+D+ F RFD EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L + A +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ ++ + V + + +Y E+D +EAANA NF+ + VP I+W++
Sbjct: 180 RA--STEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+ + + +L + G D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++P ++ L +++D KV Q + G VP DT
Sbjct: 298 STRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSG-WVP-ADT 355
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
+N FE AA R T E F+KPL + G+ LL
Sbjct: 356 Q---------VNEFE---AAIR-----TVCEPIFEKPLKD-----------ISFGQLLLR 387
Query: 593 IAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPY 635
+ F+ F V+ VL +G+G+ L P D+ AKP+
Sbjct: 388 L-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTTAKPF 433
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 209/403 (51%), Gaps = 32/403 (7%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
V + I D G++GS++ ++ L +++D +V Q + G VP
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AHTKVNEFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLMRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
A + + ++G+G+ L P D+ AKP+
Sbjct: 391 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPF 433
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 213 bits (541), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 160/505 (31%), Positives = 253/505 (50%), Gaps = 58/505 (11%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D+L + + L +LQD+VPPFPSE A I+E+ LGAP
Sbjct: 55 LRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAP 114
Query: 296 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ ++F F +P+A+AS+ QVH A L G++VVVKV RPG++ + DL + ++A L+
Sbjct: 115 VSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLE 174
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
K S+G + V + + S ++ E+D +EAANA NF++ + +P I W+YT
Sbjct: 175 KY--WSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDWDYT 232
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
+L ME + GI I + +L++ GV+ + L VE + Q+ FFHAD HPGNI V
Sbjct: 233 RKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFV 292
Query: 475 DDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
D N + I DFG++G+++P+ + L + +D +V Q +Q G + P
Sbjct: 293 DVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETR- 351
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
+N FE AA R T E F++PL + G LL
Sbjct: 352 ----------VNEFE---AAIR-----TVCEPIFERPLKD-----------ISFGHFLLR 382
Query: 593 IAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPYAMELLKFRE 644
+ F+ F V+ VL +G+G+ L P D+ A+P+ + ++ R
Sbjct: 383 L-----FQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFLEDWMRKR- 436
Query: 645 AGVEVILKDFRNR---WDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKL-RVRTLESE 700
G ++K +N W Q+ L A + + + + L L + + L SE
Sbjct: 437 IGPSGLIKSLQNHLPSWLEQSPEMPQLVHDALLQIRSSGPTEAQNRATLALMKEQQLRSE 496
Query: 701 RAFQR-----VAAVQKTVGSVSYSG 720
R ++R V A VGS ++G
Sbjct: 497 RRWRRGFIALVLAGAALVGSQPHAG 521
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 213 bits (541), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 233/441 (52%), Gaps = 39/441 (8%)
Query: 220 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 279
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 280 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 338
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE+V VKV RP L +
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPV 157
Query: 339 FDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFA 395
+ DL +R A +++++ +DG + R+ VA +D+ L+ E+D +EAANA
Sbjct: 158 IEQDLSLMRFGAGWVERL--FADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLG 212
Query: 396 SNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLE 455
NF++ D + VP +F++Y T +LT+E++ G ++ I L G+D +L Y VE +
Sbjct: 213 RNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFT 272
Query: 456 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK 515
Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +
Sbjct: 273 QVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRR 330
Query: 516 VLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEK 575
V A ++ G VP DT A EE AA R E F KP+S+
Sbjct: 331 VATAHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKPISQIS- 370
Query: 576 IEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
+ L ++ + + ++G+G+ LDP D+ + AKP+
Sbjct: 371 -------FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPF 423
Query: 636 AMELLKFREAGVEVILKDFRN 656
++ + + G + + ++ +N
Sbjct: 424 LVKWMN-GQVGPKALWRNLKN 443
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 226/438 (51%), Gaps = 33/438 (7%)
Query: 220 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 279
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 280 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 338
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE V VKV RP L L
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPL 157
Query: 339 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNF 398
+ DL +R A +++++ SDG + + + E L+ E+D +EAANA NF
Sbjct: 158 IEQDLSLMRFGAAWVERL--FSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNF 215
Query: 399 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 458
+ + + VP +F++Y T +LT+E++ G + I L G+D +L Y VE + Q+
Sbjct: 216 HNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 459 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 518
GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +V
Sbjct: 276 RDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVAT 333
Query: 519 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 578
A ++ G VP DT A EE AA R E F KP+S+
Sbjct: 334 AHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKPISQIS---- 370
Query: 579 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 638
+ L ++ + + ++G+G+ LDP D+ + AKP+ ++
Sbjct: 371 ----FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
Query: 639 LLKFREAGVEVILKDFRN 656
+ + G + + ++ +N
Sbjct: 427 WMN-GQVGPKALWRNLKN 443
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 211/407 (51%), Gaps = 36/407 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 351 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 410
+++ + +DG + + E + L+ E+D +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 411 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 470
W++ ++L ME + G+ IN+++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 471 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 528
NI V GR I DFG++G+++ +E L + F + +D +V + ++ G VP
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESG-WVP 349
Query: 529 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 588
A +N E AA R T E F +PL K+ L +
Sbjct: 350 ----------AHTRVNELE---AAIR-----TVCEPYFDRPL--------KEISLGMVLL 383
Query: 589 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPF 430
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 210/407 (51%), Gaps = 36/407 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 350
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 351 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 410
+++ + +DG + + E + L+ E+D +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 411 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 470
W++ ++L ME + G+ IN++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 471 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 528
NI V GR I DFG++G+++ +E L + F + +D +V + ++ G VP
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESG-WVP 349
Query: 529 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 588
A +N E AA R T E F +PL K+ L +
Sbjct: 350 ----------AHTRVNELE---AAIR-----TVCEPYFDRPL--------KEISLGMVLL 383
Query: 589 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPF 430
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 211/407 (51%), Gaps = 36/407 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E++ RLGP F+K GQ STR D+L + +EL+ LQD+VPPF + AV+ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 350
+ +VF F+ P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 351 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 410
+++ + +DG + + E + L+ E+D +EAANA N + + V++P I
Sbjct: 173 GWVESL--SADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEIL 230
Query: 411 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 470
W++ P++L ME + G+ I++I+ L GVD ++L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 471 NIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 528
NI V G GR I DFG++GS++ +E L + F + +D +V + V+ G VP
Sbjct: 291 NIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESG-WVP 349
Query: 529 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 588
DT +N E + A E F +PL K+ L +
Sbjct: 350 -ADTR---------INELESAIRA--------VCEPYFDRPL--------KEISLGMVLM 383
Query: 589 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPF 430
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 230/456 (50%), Gaps = 63/456 (13%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + DEL+ LQDQVPPFP + A++++E +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
+ +F RFD +P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
+ +D + V + + ++ E+D +EAANA NF+ + VP ++W+
Sbjct: 179 RA--SADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYWDLC 236
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
Q+L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++ ++ L +++D KV Q + G VP DT
Sbjct: 297 STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP-ADT 354
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
+N FE AA R T E F+KPL + G+ LL
Sbjct: 355 K---------VNEFE---AAIR-----TVCEPIFEKPLKD-----------ISFGQLLLR 386
Query: 593 IAADQPFRFPATFTFVVRAFSVL--------DGIGKGLDPRFDITEIAKPYAMELLKFRE 644
+ F+ F V+ VL +G+G+ L P D+ A+P+ ++ R
Sbjct: 387 L-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFLERWMRERV 441
Query: 645 AGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 680
+ + ++ NL +QA++V L++
Sbjct: 442 SPLHLL---------------RNLQQQAEQVPHLSQ 462
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 204/413 (49%), Gaps = 34/413 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA I+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKS 114
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ F FD P+A+AS+ QVH A L G EVVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
P +D + I E + L E+D +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRP--CEIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHT 232
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
Q+LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI V
Sbjct: 233 AEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV 292
Query: 475 DD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG 530
D + R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 293 DSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH- 351
Query: 531 DTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDL 590
VR EE AA R + E F +PLS+ LA + L
Sbjct: 352 ----VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVLMKL 385
Query: 591 LAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFR 643
+A + + ++G+G+ LDP DI +A+P +L+ R
Sbjct: 386 FHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 209/407 (51%), Gaps = 36/407 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+E++ LGP F+K GQ STR D++ + +EL+ LQD+VPPF S+ AV +E
Sbjct: 53 LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKK 112
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 350
LD +F F+ EP+A+AS+ QVH A + +V VKV RPG+K + D DL + ++A
Sbjct: 113 LDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 351 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 410
+++++ +DG + + E + L+ E+D +EA+NA N + +D V +P ++
Sbjct: 173 RWVERL--SADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVY 230
Query: 411 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 470
W++ ++ M+ + G+ I++++ L E GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 471 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 528
NI V + GR I DFG++G+++ +E L + F + +D +V + ++ G + P
Sbjct: 291 NIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPP 350
Query: 529 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 588
+ +E AA R E F +PL++ L +
Sbjct: 351 S--------------TRVDELEAAIR-----AVCEPYFDRPLAEIS--------LGMVLM 383
Query: 589 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 635
L + + + ++G+G+ LDP D+ AKP+
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPF 430
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 228/456 (50%), Gaps = 45/456 (9%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ A+P+ ++ R + +++
Sbjct: 391 TARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL-- 448
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 687
R F Q + ++A +T++RL Q
Sbjct: 449 ----------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 228/456 (50%), Gaps = 45/456 (9%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ A+P+ ++ R + +++
Sbjct: 391 TARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL-- 448
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 687
R F Q + ++A +T++RL Q
Sbjct: 449 ----------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 228/456 (50%), Gaps = 45/456 (9%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ A+P+ ++ R + +++
Sbjct: 391 TARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL-- 448
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 687
R F Q + ++A +T++RL Q
Sbjct: 449 ----------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 228/456 (50%), Gaps = 45/456 (9%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 355 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 414
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 415 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 474
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 475 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT 532
+ I D G++GS++ ++ L +++D KV Q + G VP
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP---- 352
Query: 533 TAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLA 592
A+ +N FE AA R T E F+KPL K + L
Sbjct: 353 ------AETKVNDFE---AAIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQ 390
Query: 593 IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILK 652
A + + ++G+G+ L P D+ A+P+ ++ R + +++
Sbjct: 391 TARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL-- 448
Query: 653 DFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 687
R F Q + ++A +T++RL Q
Sbjct: 449 ----------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 206/414 (49%), Gaps = 36/414 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 355 KIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 413
P +D + R+ VA E + L E+D +E ANA + ++ D + VP + W +
Sbjct: 175 HTHPNADKIRPREIVA---EIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSH 231
Query: 414 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 473
T ++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI
Sbjct: 232 TAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIW 291
Query: 474 VDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT 529
VD + R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 292 VDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH 351
Query: 530 GDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGED 589
VR EE AA R + E F +PLS+ LA +
Sbjct: 352 -----VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMK 384
Query: 590 LLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFR 643
L +A + + ++G+G+ LDP DI +A+P +L+ R
Sbjct: 385 LFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 206/414 (49%), Gaps = 36/414 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 355 KIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 413
P +D + R+ VA E + L E+D +E ANA + ++ D + VP + W +
Sbjct: 175 HTHPNADKIRPREIVA---EIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSH 231
Query: 414 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 473
T ++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI
Sbjct: 232 TAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIW 291
Query: 474 VDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT 529
VD + R I DFG+MG +S + L E F I+ KD ++ + V+ G + P
Sbjct: 292 VDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPH 351
Query: 530 GDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGED 589
VR EE AA R + E F +PLS+ LA +
Sbjct: 352 -----VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMK 384
Query: 590 LLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFR 643
L +A + + ++G+G+ LDP DI +A+P +L+ R
Sbjct: 385 LFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 206/414 (49%), Gaps = 36/414 (8%)
Query: 236 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 295
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA I+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKS 114
Query: 296 LDDVFERFDVEPIAAASLGQVHRARLKG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 354
++ F FD P+A+AS+ QVH A L EVVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 355 KIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 413
P +D + R+ VA E + L E+D +E ANA + ++ D + VP + W +
Sbjct: 175 HTHPNADKIRPREIVA---EIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSH 231
Query: 414 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 473
T ++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI
Sbjct: 232 TAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIW 291
Query: 474 VDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT 529
VD + R I DFG+MG +S + L E F I+ KD ++ + V+ G +P
Sbjct: 292 VDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAG-WIPQ 350
Query: 530 GDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGED 589
VR EE AA R + E F +PLS+ LA +
Sbjct: 351 H----VR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVLMK 384
Query: 590 LLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFR 643
L +A + + ++G+G+ LDP DI +A+P +L+ R
Sbjct: 385 LFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 199 bits (505), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 211/422 (50%), Gaps = 34/422 (8%)
Query: 216 YRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQ 275
Y G + K+ K + L+++ LGPTFIKIGQ STR D+L Y+ ELS+LQ+
Sbjct: 16 YGFGFIVDSKLNGNKKSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNN 75
Query: 276 VPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPG 334
VPP ++ EEL + +D+ F FD PI +AS+ QVH A LK G V+VK+QRPG
Sbjct: 76 VPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQRPG 135
Query: 335 LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELF 394
+ ++ D L +I + L K A D DE QE+D+ E N + F
Sbjct: 136 IAEMMKTD---LSIIKKLLNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKF 192
Query: 395 ASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYL 454
+D+ +V+ P + T +I+ ME + GIKI+ ++ L G D + LG+ SY
Sbjct: 193 KKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYF 252
Query: 455 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD 514
+Q+ GFFH DPHPGN+ + + + + DFG+MG+IS +++ L +A + D +
Sbjct: 253 KQVFQDGFFHGDPHPGNLLIRE---NHICYIDFGIMGTISKSLKISLNDAILAVAYHDVN 309
Query: 515 KVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEE 574
K++ ++ +GV + ++ + ++ +++
Sbjct: 310 KMISVIMSIGVKKGYVNRNSLYESIEYLFDNYIS-------------------------- 343
Query: 575 KIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKP 634
+ K +++ + +++ I+ + + P T ++++ +++G+ + P I ++ P
Sbjct: 344 -VSLKNIKISVMLQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIP 402
Query: 635 YA 636
Y
Sbjct: 403 YV 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,224,112
Number of Sequences: 539616
Number of extensions: 11873124
Number of successful extensions: 44057
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 43106
Number of HSP's gapped (non-prelim): 482
length of query: 721
length of database: 191,569,459
effective HSP length: 125
effective length of query: 596
effective length of database: 124,117,459
effective search space: 73974005564
effective search space used: 73974005564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)