Query 004984
Match_columns 721
No_of_seqs 501 out of 2389
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 16:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4.2E-36 9.1E-41 327.9 22.2 296 383-702 218-524 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.1E-35 1.5E-39 318.3 23.4 338 363-707 133-488 (966)
3 KOG4441 Proteins containing BT 100.0 1.2E-30 2.6E-35 300.6 17.4 219 175-403 30-260 (571)
4 PHA02713 hypothetical protein; 100.0 4.1E-30 8.9E-35 296.6 17.1 189 175-376 19-218 (557)
5 PHA02790 Kelch-like protein; P 100.0 3.7E-30 8.1E-35 292.4 12.8 174 175-357 16-196 (480)
6 TIGR00990 3a0801s09 mitochondr 100.0 6.4E-27 1.4E-31 273.9 37.8 283 361-671 142-500 (615)
7 TIGR00990 3a0801s09 mitochondr 100.0 3.8E-26 8.2E-31 267.4 37.8 312 361-703 175-570 (615)
8 PHA03098 kelch-like protein; P 100.0 2.4E-28 5.3E-33 281.2 18.0 186 177-376 5-200 (534)
9 PRK15174 Vi polysaccharide exp 99.9 5.3E-24 1.1E-28 250.7 38.7 319 361-707 57-384 (656)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-22 2.9E-27 241.6 46.8 334 361-702 548-898 (899)
11 PRK15174 Vi polysaccharide exp 99.9 1.4E-23 3E-28 247.1 35.4 285 360-671 90-385 (656)
12 PRK11447 cellulose synthase su 99.9 1.7E-23 3.7E-28 260.9 36.5 307 361-670 284-703 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 3.8E-22 8.3E-27 237.7 40.2 320 362-685 481-818 (899)
14 PRK11447 cellulose synthase su 99.9 2.2E-22 4.7E-27 251.0 35.1 307 387-703 273-699 (1157)
15 PRK09782 bacteriophage N4 rece 99.9 3E-22 6.4E-27 242.5 31.7 266 382-673 476-746 (987)
16 KOG0547 Translocase of outer m 99.9 4.8E-22 1E-26 214.4 28.6 298 377-702 109-530 (606)
17 PRK11788 tetratricopeptide rep 99.9 2.5E-21 5.4E-26 212.8 35.2 292 384-702 36-345 (389)
18 PRK09782 bacteriophage N4 rece 99.9 6.7E-21 1.5E-25 230.8 34.2 237 435-672 461-711 (987)
19 KOG0547 Translocase of outer m 99.9 3.7E-21 7.9E-26 207.7 26.8 307 363-672 132-571 (606)
20 KOG4350 Uncharacterized conser 99.9 5E-23 1.1E-27 216.3 10.1 192 178-377 41-237 (620)
21 KOG1126 DNA-binding cell divis 99.9 7.5E-21 1.6E-25 212.4 24.9 263 385-672 355-625 (638)
22 PRK11189 lipoprotein NlpI; Pro 99.9 3.5E-20 7.5E-25 198.3 26.5 184 462-673 81-272 (296)
23 PRK11189 lipoprotein NlpI; Pro 99.9 1.9E-20 4.1E-25 200.4 23.6 235 397-653 40-286 (296)
24 PRK11788 tetratricopeptide rep 99.9 4.2E-19 9E-24 195.2 34.7 279 361-666 50-346 (389)
25 KOG0624 dsRNA-activated protei 99.9 1.6E-20 3.6E-25 195.2 21.3 214 446-672 42-257 (504)
26 PRK10049 pgaA outer membrane p 99.9 5.3E-19 1.1E-23 212.1 35.5 311 361-676 98-466 (765)
27 PRK10049 pgaA outer membrane p 99.9 1.2E-18 2.6E-23 209.0 37.1 309 383-704 49-456 (765)
28 PLN02789 farnesyltranstransfer 99.8 4E-19 8.6E-24 191.6 26.3 218 429-683 34-267 (320)
29 KOG0548 Molecular co-chaperone 99.8 1.2E-18 2.6E-23 190.9 26.1 294 388-681 7-436 (539)
30 PRK12370 invasion protein regu 99.8 2E-18 4.2E-23 200.0 25.8 222 419-666 262-501 (553)
31 KOG1126 DNA-binding cell divis 99.8 9.3E-19 2E-23 195.8 22.0 205 413-641 419-628 (638)
32 PRK12370 invasion protein regu 99.8 5E-18 1.1E-22 196.7 28.2 254 386-666 261-534 (553)
33 KOG0624 dsRNA-activated protei 99.8 4.1E-17 8.8E-22 170.1 25.6 277 383-672 72-375 (504)
34 PLN02789 farnesyltranstransfer 99.8 3E-17 6.4E-22 177.1 24.4 222 397-650 34-267 (320)
35 PF13429 TPR_15: Tetratricopep 99.8 3.2E-18 6.9E-23 181.1 15.7 255 388-667 13-277 (280)
36 KOG2002 TPR-containing nuclear 99.8 7E-16 1.5E-20 178.1 34.8 307 362-668 286-710 (1018)
37 KOG2075 Topoisomerase TOP1-int 99.8 2.7E-18 5.8E-23 185.5 14.1 177 174-359 107-298 (521)
38 KOG1173 Anaphase-promoting com 99.7 5.1E-16 1.1E-20 171.0 27.8 271 390-685 251-537 (611)
39 TIGR02521 type_IV_pilW type IV 99.7 3.6E-16 7.7E-21 156.0 24.3 186 462-669 48-234 (234)
40 KOG0550 Molecular chaperone (D 99.7 5.2E-17 1.1E-21 173.1 17.4 281 377-670 43-353 (486)
41 TIGR00540 hemY_coli hemY prote 99.7 6.3E-15 1.4E-19 164.8 33.8 284 382-685 83-384 (409)
42 TIGR02521 type_IV_pilW type IV 99.7 4.5E-15 9.8E-20 148.0 25.4 199 383-635 31-234 (234)
43 KOG1155 Anaphase-promoting com 99.7 3.1E-15 6.6E-20 161.5 24.7 250 387-666 231-494 (559)
44 PF00651 BTB: BTB/POZ domain; 99.7 3.1E-17 6.8E-22 148.8 7.9 102 177-281 6-110 (111)
45 KOG2002 TPR-containing nuclear 99.7 9.8E-15 2.1E-19 168.8 29.1 312 382-699 163-558 (1018)
46 PF13429 TPR_15: Tetratricopep 99.7 2.2E-16 4.7E-21 167.1 14.5 243 420-687 13-264 (280)
47 KOG1125 TPR repeat-containing 99.7 7.8E-16 1.7E-20 170.3 18.8 250 421-705 291-555 (579)
48 KOG2076 RNA polymerase III tra 99.7 1.3E-14 2.9E-19 166.9 29.1 282 384-665 140-510 (895)
49 KOG4591 Uncharacterized conser 99.7 8.5E-17 1.8E-21 156.0 9.6 171 175-352 60-244 (280)
50 KOG1129 TPR repeat-containing 99.7 6.1E-16 1.3E-20 160.6 16.5 243 387-651 227-476 (478)
51 PRK15359 type III secretion sy 99.7 7.6E-16 1.6E-20 147.7 14.7 125 466-651 14-139 (144)
52 PRK15359 type III secretion sy 99.7 1.6E-15 3.4E-20 145.5 14.9 124 500-683 14-138 (144)
53 PRK14574 hmsH outer membrane p 99.7 1.3E-13 2.8E-18 164.9 34.2 319 362-684 50-497 (822)
54 PRK10747 putative protoheme IX 99.6 2.3E-13 5E-18 151.7 31.8 271 382-682 83-372 (398)
55 TIGR00540 hemY_coli hemY prote 99.6 2E-13 4.2E-18 152.8 31.2 280 361-667 99-399 (409)
56 COG3063 PilF Tfp pilus assembl 99.6 7.4E-15 1.6E-19 147.2 16.8 163 448-669 41-204 (250)
57 KOG1155 Anaphase-promoting com 99.6 8.2E-14 1.8E-18 150.6 25.7 258 387-672 266-541 (559)
58 smart00225 BTB Broad-Complex, 99.6 1.1E-15 2.4E-20 131.4 9.1 90 183-275 1-90 (90)
59 KOG1174 Anaphase-promoting com 99.6 3.3E-13 7E-18 144.1 29.3 294 363-689 216-521 (564)
60 KOG1125 TPR repeat-containing 99.6 2.2E-14 4.7E-19 158.9 20.7 225 387-636 289-530 (579)
61 cd05804 StaR_like StaR_like; a 99.6 1.1E-12 2.3E-17 142.8 31.1 270 382-668 42-337 (355)
62 KOG0548 Molecular co-chaperone 99.6 1.6E-13 3.4E-18 151.1 22.9 246 382-663 223-485 (539)
63 TIGR03302 OM_YfiO outer membra 99.6 2.5E-13 5.4E-18 139.6 21.5 165 462-667 50-232 (235)
64 PRK14574 hmsH outer membrane p 99.6 2.7E-12 5.8E-17 153.7 33.1 321 345-672 100-518 (822)
65 KOG4682 Uncharacterized conser 99.6 2.9E-14 6.2E-19 151.3 13.4 178 176-361 64-252 (488)
66 cd05804 StaR_like StaR_like; a 99.5 1.9E-11 4E-16 133.0 32.4 296 383-702 6-334 (355)
67 KOG2076 RNA polymerase III tra 99.5 5.8E-12 1.2E-16 145.4 28.8 256 417-672 141-483 (895)
68 PRK10747 putative protoheme IX 99.5 1.2E-11 2.6E-16 138.0 30.7 254 386-667 121-390 (398)
69 KOG4162 Predicted calmodulin-b 99.5 1.2E-11 2.6E-16 140.8 30.3 314 384-697 358-783 (799)
70 COG3063 PilF Tfp pilus assembl 99.5 5.5E-12 1.2E-16 126.8 22.8 203 383-640 35-243 (250)
71 KOG0550 Molecular chaperone (D 99.5 2.6E-13 5.7E-18 145.1 13.8 239 421-683 55-333 (486)
72 PRK15179 Vi polysaccharide bio 99.5 2.7E-12 6E-17 151.1 22.1 159 462-678 69-229 (694)
73 KOG1129 TPR repeat-containing 99.5 1.4E-12 3E-17 135.9 17.0 226 420-672 228-463 (478)
74 KOG1173 Anaphase-promoting com 99.5 1.2E-11 2.5E-16 137.0 24.4 216 417-650 314-535 (611)
75 PRK10370 formate-dependent nit 99.4 5.4E-12 1.2E-16 127.5 18.7 122 461-640 55-180 (198)
76 TIGR03302 OM_YfiO outer membra 99.4 5.7E-12 1.2E-16 129.5 18.6 163 382-544 32-235 (235)
77 KOG1840 Kinesin light chain [C 99.4 1.5E-11 3.2E-16 139.2 22.3 231 383-666 199-478 (508)
78 KOG0553 TPR repeat-containing 99.4 2.9E-12 6.2E-17 133.3 14.4 157 480-703 82-244 (304)
79 KOG0553 TPR repeat-containing 99.4 1.9E-12 4.1E-17 134.6 12.7 95 449-546 88-183 (304)
80 PRK10370 formate-dependent nit 99.4 1.5E-11 3.3E-16 124.2 18.0 83 590-672 93-178 (198)
81 TIGR02552 LcrH_SycD type III s 99.4 9.4E-12 2E-16 116.5 13.9 72 603-674 50-121 (135)
82 KOG0783 Uncharacterized conser 99.4 4.8E-13 1E-17 151.4 5.5 141 177-320 706-852 (1267)
83 KOG1128 Uncharacterized conser 99.4 3.9E-11 8.5E-16 136.1 20.7 216 387-636 402-619 (777)
84 PRK15179 Vi polysaccharide bio 99.4 2.6E-11 5.7E-16 142.9 20.0 143 443-643 80-227 (694)
85 PLN03081 pentatricopeptide (PP 99.3 5.8E-09 1.3E-13 124.6 38.3 277 385-667 261-557 (697)
86 KOG1127 TPR repeat-containing 99.3 5.8E-11 1.3E-15 137.7 19.8 248 394-666 430-699 (1238)
87 TIGR02552 LcrH_SycD type III s 99.3 3.2E-11 6.9E-16 112.9 14.6 116 467-640 5-121 (135)
88 PLN03218 maturation of RBCL 1; 99.3 7.4E-09 1.6E-13 127.5 38.5 287 384-674 473-792 (1060)
89 KOG4162 Predicted calmodulin-b 99.3 4.1E-09 8.9E-14 120.6 32.4 315 383-704 323-749 (799)
90 KOG1127 TPR repeat-containing 99.3 1.6E-10 3.4E-15 134.2 21.0 163 383-545 492-663 (1238)
91 KOG1840 Kinesin light chain [C 99.3 2.7E-10 5.8E-15 129.1 22.5 266 386-668 131-439 (508)
92 COG2956 Predicted N-acetylgluc 99.3 9.7E-09 2.1E-13 107.7 31.9 302 347-686 11-331 (389)
93 KOG0495 HAT repeat protein [RN 99.3 7.6E-09 1.6E-13 116.2 33.0 265 396-685 563-867 (913)
94 KOG2003 TPR repeat-containing 99.3 7.4E-10 1.6E-14 119.4 24.2 260 387-652 423-708 (840)
95 PLN03218 maturation of RBCL 1; 99.3 9E-09 2E-13 126.7 36.8 315 383-703 437-782 (1060)
96 PLN03081 pentatricopeptide (PP 99.3 3.8E-09 8.2E-14 126.1 32.9 153 383-541 189-354 (697)
97 PRK04841 transcriptional regul 99.3 2.6E-09 5.7E-14 130.7 30.7 302 349-672 413-765 (903)
98 PLN03077 Protein ECB2; Provisi 99.3 4.6E-08 1E-12 119.5 41.2 270 362-666 405-719 (857)
99 PLN03077 Protein ECB2; Provisi 99.3 7.5E-09 1.6E-13 126.4 34.2 329 340-683 284-637 (857)
100 KOG1174 Anaphase-promoting com 99.2 1.7E-09 3.8E-14 116.0 23.9 251 363-641 249-508 (564)
101 KOG2003 TPR repeat-containing 99.2 3.8E-09 8.2E-14 114.0 23.8 208 387-619 494-709 (840)
102 PLN03088 SGT1, suppressor of 99.2 2.5E-10 5.3E-15 125.6 14.5 96 449-547 9-105 (356)
103 PRK10153 DNA-binding transcrip 99.1 7.3E-10 1.6E-14 127.1 17.3 144 515-676 342-491 (517)
104 PLN03088 SGT1, suppressor of 99.1 6.2E-10 1.4E-14 122.4 15.5 112 482-651 5-117 (356)
105 KOG1156 N-terminal acetyltrans 99.1 1.6E-08 3.5E-13 113.9 25.2 266 385-672 9-288 (700)
106 COG5010 TadD Flp pilus assembl 99.1 5.1E-09 1.1E-13 107.4 19.5 177 462-663 50-227 (257)
107 KOG1156 N-terminal acetyltrans 99.1 1E-08 2.2E-13 115.5 22.9 238 425-679 17-260 (700)
108 COG5010 TadD Flp pilus assembl 99.1 5.1E-09 1.1E-13 107.4 18.5 164 402-572 52-222 (257)
109 COG0457 NrfG FOG: TPR repeat [ 99.1 1.1E-07 2.4E-12 90.9 26.5 197 462-683 76-278 (291)
110 PF13414 TPR_11: TPR repeat; P 99.1 3.2E-10 7E-15 94.0 7.6 67 603-669 2-69 (69)
111 KOG4648 Uncharacterized conser 99.1 1.1E-10 2.4E-15 122.5 5.8 216 447-672 102-335 (536)
112 PRK11906 transcriptional regul 99.1 2.5E-09 5.4E-14 118.1 16.2 144 527-688 273-425 (458)
113 PRK14720 transcript cleavage f 99.1 1.6E-08 3.5E-13 120.7 23.9 146 382-541 30-178 (906)
114 PF13414 TPR_11: TPR repeat; P 99.0 6.7E-10 1.5E-14 92.1 8.2 67 477-543 1-69 (69)
115 PRK15363 pathogenicity island 99.0 4.2E-09 9E-14 101.5 14.7 110 512-679 35-147 (157)
116 KOG0495 HAT repeat protein [RN 99.0 9.8E-07 2.1E-11 99.7 34.6 252 393-672 628-885 (913)
117 COG3071 HemY Uncharacterized e 99.0 1.1E-06 2.4E-11 94.9 32.4 277 383-667 84-390 (400)
118 PRK15363 pathogenicity island 99.0 3.5E-09 7.6E-14 102.0 12.2 81 462-542 52-133 (157)
119 PRK04841 transcriptional regul 99.0 2E-07 4.3E-12 114.3 30.6 280 387-685 413-745 (903)
120 PF12569 NARP1: NMDA receptor- 99.0 1.9E-07 4E-12 107.1 28.1 240 382-636 37-337 (517)
121 COG2956 Predicted N-acetylgluc 99.0 1.9E-07 4.1E-12 98.2 25.3 167 379-545 103-282 (389)
122 COG4785 NlpI Lipoprotein NlpI, 99.0 1.8E-08 3.9E-13 100.6 16.9 196 448-672 64-272 (297)
123 PRK11906 transcriptional regul 99.0 2.2E-08 4.8E-13 110.7 19.5 155 462-664 275-433 (458)
124 PF04733 Coatomer_E: Coatomer 99.0 1.3E-08 2.8E-13 108.9 15.6 247 394-671 12-269 (290)
125 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 100.7 14.1 65 607-671 75-153 (172)
126 PRK10153 DNA-binding transcrip 98.9 1.3E-08 2.9E-13 116.8 16.3 144 383-548 339-489 (517)
127 CHL00033 ycf3 photosystem I as 98.9 1.7E-08 3.6E-13 98.9 14.4 121 495-670 15-152 (168)
128 KOG1130 Predicted G-alpha GTPa 98.9 1.3E-08 2.8E-13 109.3 14.4 62 606-667 277-344 (639)
129 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.4E-08 5.2E-13 90.4 14.2 66 480-545 3-72 (119)
130 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 3.3E-09 7.2E-14 117.0 9.8 101 598-704 69-174 (453)
131 PRK14720 transcript cleavage f 98.9 1.3E-08 2.9E-13 121.5 15.5 155 471-667 23-178 (906)
132 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.1E-08 4.6E-13 90.7 13.5 105 513-672 3-110 (119)
133 KOG4555 TPR repeat-containing 98.9 2.1E-08 4.6E-13 92.8 12.8 87 459-545 57-148 (175)
134 KOG4648 Uncharacterized conser 98.9 2E-09 4.3E-14 113.2 5.9 186 386-571 100-327 (536)
135 PRK02603 photosystem I assembl 98.9 3.6E-08 7.9E-13 97.0 14.5 72 475-546 31-106 (172)
136 PF13432 TPR_16: Tetratricopep 98.9 5.8E-09 1.2E-13 85.5 7.2 65 608-672 1-65 (65)
137 COG0457 NrfG FOG: TPR repeat [ 98.9 1.3E-06 2.9E-11 83.4 24.7 238 396-663 36-289 (291)
138 PF12569 NARP1: NMDA receptor- 98.8 2.8E-07 6E-12 105.7 22.6 63 608-670 198-260 (517)
139 COG4783 Putative Zn-dependent 98.8 5E-07 1.1E-11 99.7 22.9 132 413-544 304-440 (484)
140 KOG3060 Uncharacterized conser 98.8 5E-07 1.1E-11 92.4 20.9 190 469-683 42-240 (289)
141 KOG1130 Predicted G-alpha GTPa 98.8 3.8E-08 8.3E-13 105.7 13.3 274 366-653 37-370 (639)
142 CHL00033 ycf3 photosystem I as 98.8 8.9E-08 1.9E-12 93.8 14.6 86 462-547 16-107 (168)
143 cd00189 TPR Tetratricopeptide 98.8 5E-08 1.1E-12 81.5 10.6 93 449-544 7-100 (100)
144 KOG4234 TPR repeat-containing 98.8 4.9E-08 1.1E-12 96.5 11.5 100 422-546 102-202 (271)
145 KOG2376 Signal recognition par 98.8 6.2E-07 1.3E-11 100.5 21.4 217 425-673 22-259 (652)
146 PF14938 SNAP: Soluble NSF att 98.8 6.4E-08 1.4E-12 103.1 13.2 206 383-607 35-274 (282)
147 KOG1128 Uncharacterized conser 98.8 2.9E-07 6.4E-12 105.2 18.9 177 383-571 424-606 (777)
148 KOG0543 FKBP-type peptidyl-pro 98.7 1.4E-07 2.9E-12 102.4 14.8 114 419-547 212-326 (397)
149 COG4783 Putative Zn-dependent 98.7 1.1E-06 2.3E-11 97.2 21.6 83 590-672 360-442 (484)
150 COG3071 HemY Uncharacterized e 98.7 2.4E-05 5.2E-10 84.8 31.2 261 422-693 91-382 (400)
151 PRK10866 outer membrane biogen 98.7 1.6E-06 3.5E-11 90.5 21.7 159 462-661 49-235 (243)
152 KOG3060 Uncharacterized conser 98.7 1.3E-06 2.9E-11 89.3 19.4 210 351-611 18-232 (289)
153 cd00189 TPR Tetratricopeptide 98.7 2E-07 4.3E-12 77.9 11.3 82 589-670 19-100 (100)
154 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 4.4E-08 9.6E-13 108.2 9.1 73 473-545 69-146 (453)
155 PF13432 TPR_16: Tetratricopep 98.7 8.8E-08 1.9E-12 78.5 8.4 63 483-545 1-64 (65)
156 KOG4234 TPR repeat-containing 98.7 1.4E-07 3.1E-12 93.2 10.5 103 482-642 98-206 (271)
157 COG4785 NlpI Lipoprotein NlpI, 98.6 1.4E-06 2.9E-11 87.4 17.3 186 422-636 72-269 (297)
158 KOG0543 FKBP-type peptidyl-pro 98.6 5E-07 1.1E-11 98.1 14.6 147 383-543 208-357 (397)
159 PF14938 SNAP: Soluble NSF att 98.6 1.6E-06 3.4E-11 92.5 18.1 211 397-696 29-258 (282)
160 PF09976 TPR_21: Tetratricopep 98.6 1.4E-06 3E-11 83.5 15.0 111 428-539 24-145 (145)
161 PF12895 Apc3: Anaphase-promot 98.6 1.3E-07 2.9E-12 81.8 6.9 75 589-664 8-84 (84)
162 PF12895 Apc3: Anaphase-promot 98.6 1.6E-07 3.4E-12 81.3 7.0 79 459-538 3-84 (84)
163 PRK10866 outer membrane biogen 98.5 6.2E-06 1.4E-10 86.1 19.6 152 383-534 32-234 (243)
164 PRK10803 tol-pal system protei 98.5 1.6E-06 3.5E-11 91.5 14.5 107 479-640 142-253 (263)
165 PF12688 TPR_5: Tetratrico pep 98.5 1.5E-06 3.2E-11 80.9 12.2 99 513-666 2-103 (120)
166 PF13525 YfiO: Outer membrane 98.5 1.4E-05 3.1E-10 81.0 19.7 174 416-657 6-197 (203)
167 PF13525 YfiO: Outer membrane 98.5 1.4E-05 3E-10 81.1 19.6 148 382-529 4-195 (203)
168 COG4235 Cytochrome c biogenesi 98.4 3.2E-06 7E-11 89.0 14.6 124 462-640 139-263 (287)
169 PF13371 TPR_9: Tetratricopept 98.4 7.4E-07 1.6E-11 74.5 8.1 68 611-678 2-70 (73)
170 PF09976 TPR_21: Tetratricopep 98.4 5.2E-06 1.1E-10 79.5 14.9 119 491-665 23-145 (145)
171 PRK10803 tol-pal system protei 98.4 3.1E-06 6.7E-11 89.3 14.4 107 511-672 141-251 (263)
172 PF13371 TPR_9: Tetratricopept 98.4 7.5E-07 1.6E-11 74.4 7.7 58 451-511 4-61 (73)
173 PF14559 TPR_19: Tetratricopep 98.4 7.8E-07 1.7E-11 73.3 7.2 65 614-678 1-66 (68)
174 PF12688 TPR_5: Tetratrico pep 98.4 6.2E-06 1.3E-10 76.8 13.9 99 479-632 1-103 (120)
175 PF06552 TOM20_plant: Plant sp 98.4 6.5E-07 1.4E-11 87.7 7.1 86 462-547 8-115 (186)
176 COG4235 Cytochrome c biogenesi 98.4 4.2E-06 9.2E-11 88.1 12.8 84 462-545 173-260 (287)
177 PF06552 TOM20_plant: Plant sp 98.3 1.4E-06 3.1E-11 85.4 8.3 93 590-683 11-124 (186)
178 KOG3785 Uncharacterized conser 98.3 0.00047 1E-08 73.7 27.4 280 388-676 62-463 (557)
179 KOG0376 Serine-threonine phosp 98.3 7.1E-07 1.5E-11 98.5 6.6 88 460-547 19-107 (476)
180 KOG2376 Signal recognition par 98.3 0.00075 1.6E-08 76.4 29.8 284 387-672 83-418 (652)
181 KOG1308 Hsp70-interacting prot 98.3 3.5E-07 7.5E-12 97.0 3.1 112 461-572 130-242 (377)
182 PF04733 Coatomer_E: Coatomer 98.3 2.4E-05 5.2E-10 83.9 16.4 158 386-547 105-271 (290)
183 KOG0783 Uncharacterized conser 98.3 1E-06 2.2E-11 101.2 5.8 71 177-247 554-634 (1267)
184 PF13424 TPR_12: Tetratricopep 98.2 9.5E-07 2.1E-11 75.0 4.3 68 601-668 2-76 (78)
185 KOG4555 TPR repeat-containing 98.2 5.8E-06 1.3E-10 76.9 9.2 84 589-672 62-149 (175)
186 KOG1941 Acetylcholine receptor 98.2 6.7E-05 1.4E-09 80.3 17.5 234 387-671 10-279 (518)
187 KOG2047 mRNA splicing factor [ 98.2 0.0024 5.2E-08 73.0 30.1 314 347-707 213-583 (835)
188 KOG0376 Serine-threonine phosp 98.2 2.1E-06 4.5E-11 94.9 5.7 93 422-514 11-108 (476)
189 PRK15331 chaperone protein Sic 98.2 1.2E-05 2.6E-10 78.2 10.3 83 462-545 54-137 (165)
190 KOG3081 Vesicle coat complex C 98.2 0.0002 4.4E-09 74.2 19.6 242 397-667 22-270 (299)
191 KOG1915 Cell cycle control pro 98.1 0.0036 7.9E-08 69.4 29.6 301 367-673 195-542 (677)
192 COG4700 Uncharacterized protei 98.1 0.00019 4.2E-09 70.8 17.5 167 462-654 73-245 (251)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 3.8E-05 8.3E-10 85.3 14.3 107 396-503 182-292 (395)
194 PRK15331 chaperone protein Sic 98.1 4.8E-05 1E-09 74.1 13.1 79 601-680 68-146 (165)
195 KOG0511 Ankyrin repeat protein 98.1 5.7E-06 1.2E-10 88.2 7.3 141 184-329 295-444 (516)
196 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.5E-05 1.2E-09 84.1 15.1 94 589-683 219-312 (395)
197 PF13424 TPR_12: Tetratricopep 98.1 3.7E-06 8.1E-11 71.3 4.6 66 476-541 2-75 (78)
198 PF07707 BACK: BTB And C-termi 98.1 2.3E-06 5E-11 76.5 3.5 83 288-376 1-91 (103)
199 PF14559 TPR_19: Tetratricopep 98.1 1.1E-05 2.4E-10 66.3 7.1 57 462-518 8-65 (68)
200 KOG3785 Uncharacterized conser 98.1 0.00075 1.6E-08 72.2 22.2 259 395-690 34-335 (557)
201 KOG4340 Uncharacterized conser 98.1 0.0007 1.5E-08 71.1 21.2 277 383-706 44-360 (459)
202 PF13431 TPR_17: Tetratricopep 98.0 4.8E-06 1E-10 59.9 3.4 32 627-658 2-33 (34)
203 PF13431 TPR_17: Tetratricopep 98.0 4.7E-06 1E-10 59.9 3.3 33 468-500 2-34 (34)
204 KOG2053 Mitochondrial inherita 98.0 0.0013 2.9E-08 77.5 24.7 227 428-671 22-259 (932)
205 KOG4642 Chaperone-dependent E3 98.0 2E-05 4.3E-10 80.3 8.0 82 460-541 25-107 (284)
206 COG4700 Uncharacterized protei 97.9 0.0011 2.4E-08 65.6 18.1 121 423-546 64-194 (251)
207 PF13512 TPR_18: Tetratricopep 97.9 0.0003 6.4E-09 67.1 13.9 69 479-547 10-82 (142)
208 KOG4642 Chaperone-dependent E3 97.9 3.7E-05 7.9E-10 78.4 7.5 111 589-699 29-144 (284)
209 COG4105 ComL DNA uptake lipopr 97.8 0.0047 1E-07 64.2 22.7 146 383-544 34-199 (254)
210 PF13512 TPR_18: Tetratricopep 97.8 0.00014 2.9E-09 69.4 10.4 63 384-446 11-78 (142)
211 KOG1308 Hsp70-interacting prot 97.8 2.2E-05 4.8E-10 83.6 5.2 88 426-513 125-216 (377)
212 KOG4340 Uncharacterized conser 97.8 0.00056 1.2E-08 71.8 15.1 224 462-715 27-302 (459)
213 KOG0545 Aryl-hydrocarbon recep 97.8 0.00024 5.2E-09 72.7 12.0 120 384-514 179-299 (329)
214 KOG0530 Protein farnesyltransf 97.8 0.001 2.2E-08 68.9 16.3 183 429-648 40-231 (318)
215 PF00515 TPR_1: Tetratricopept 97.7 5.3E-05 1.2E-09 53.8 4.5 34 638-671 1-34 (34)
216 KOG1915 Cell cycle control pro 97.6 0.14 3.1E-06 57.2 31.2 319 387-712 77-442 (677)
217 PF02214 BTB_2: BTB/POZ domain 97.6 7.4E-05 1.6E-09 66.2 5.0 88 184-274 1-94 (94)
218 KOG2716 Polymerase delta-inter 97.6 0.00031 6.7E-09 72.1 10.0 96 184-283 7-106 (230)
219 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.1E-09 55.1 5.2 43 604-646 1-43 (44)
220 KOG1941 Acetylcholine receptor 97.6 0.022 4.8E-07 61.5 23.1 263 379-660 79-384 (518)
221 PF00515 TPR_1: Tetratricopept 97.6 0.00012 2.7E-09 51.9 4.4 32 480-511 2-33 (34)
222 KOG2796 Uncharacterized conser 97.5 0.003 6.5E-08 65.5 15.9 61 480-540 178-240 (366)
223 smart00875 BACK BTB And C-term 97.5 9.8E-05 2.1E-09 65.2 4.4 77 289-371 2-86 (101)
224 KOG2047 mRNA splicing factor [ 97.5 0.15 3.2E-06 58.9 30.2 290 385-676 389-728 (835)
225 KOG1550 Extracellular protein 97.5 0.032 6.9E-07 65.3 26.2 265 383-672 244-543 (552)
226 COG1729 Uncharacterized protei 97.5 0.0015 3.3E-08 68.3 13.2 105 515-674 144-251 (262)
227 COG1729 Uncharacterized protei 97.5 0.0018 3.9E-08 67.8 13.8 105 482-641 144-252 (262)
228 KOG2838 Uncharacterized conser 97.5 5.2E-05 1.1E-09 77.9 2.4 57 191-248 261-327 (401)
229 KOG3473 RNA polymerase II tran 97.5 0.00046 1E-08 60.5 7.7 80 184-267 19-112 (112)
230 KOG2471 TPR repeat-containing 97.4 0.0033 7.2E-08 69.9 15.5 277 381-663 281-680 (696)
231 COG4105 ComL DNA uptake lipopr 97.4 0.031 6.8E-07 58.2 21.6 201 414-683 33-248 (254)
232 KOG0545 Aryl-hydrocarbon recep 97.4 0.0025 5.4E-08 65.5 13.2 120 415-546 178-298 (329)
233 PF07719 TPR_2: Tetratricopept 97.4 0.00028 6.1E-09 49.7 4.4 33 638-670 1-33 (34)
234 COG3898 Uncharacterized membra 97.4 0.35 7.5E-06 53.2 32.9 287 387-707 88-395 (531)
235 KOG1550 Extracellular protein 97.3 0.05 1.1E-06 63.7 25.0 270 387-684 216-519 (552)
236 COG3898 Uncharacterized membra 97.3 0.21 4.6E-06 54.8 27.3 248 390-667 127-392 (531)
237 KOG1586 Protein required for f 97.3 0.028 6.1E-07 57.6 19.6 123 425-547 83-230 (288)
238 KOG1070 rRNA processing protei 97.3 0.014 3.1E-07 71.8 20.0 223 462-684 1441-1682(1710)
239 KOG1586 Protein required for f 97.3 0.019 4.2E-07 58.8 17.8 99 396-508 27-143 (288)
240 PF13281 DUF4071: Domain of un 97.2 0.079 1.7E-06 58.6 23.6 198 383-648 141-349 (374)
241 PF07719 TPR_2: Tetratricopept 97.2 0.00061 1.3E-08 48.0 4.8 34 604-637 1-34 (34)
242 COG2976 Uncharacterized protei 97.2 0.081 1.7E-06 53.1 20.9 82 462-545 106-192 (207)
243 KOG0530 Protein farnesyltransf 97.2 0.075 1.6E-06 55.5 21.2 179 398-616 41-233 (318)
244 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0014 3.1E-08 69.8 8.2 84 462-545 98-186 (390)
245 PF04184 ST7: ST7 protein; In 97.1 0.03 6.4E-07 63.1 18.8 26 519-544 266-291 (539)
246 KOG1987 Speckle-type POZ prote 97.1 0.00041 8.9E-09 74.3 3.9 120 190-313 109-231 (297)
247 COG3118 Thioredoxin domain-con 97.1 0.024 5.2E-07 60.1 16.7 156 486-665 141-299 (304)
248 KOG2610 Uncharacterized conser 97.0 0.028 6E-07 60.3 16.7 185 361-545 81-282 (491)
249 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0029 6.4E-08 67.5 9.5 75 479-553 81-160 (390)
250 KOG2053 Mitochondrial inherita 97.0 0.14 3.1E-06 61.1 23.7 217 395-637 21-259 (932)
251 PF13281 DUF4071: Domain of un 97.0 0.069 1.5E-06 59.0 20.0 163 361-545 156-338 (374)
252 PF13428 TPR_14: Tetratricopep 96.8 0.0023 4.9E-08 48.5 5.1 41 638-678 1-42 (44)
253 KOG3617 WD40 and TPR repeat-co 96.8 0.15 3.2E-06 60.2 21.4 141 387-539 830-994 (1416)
254 PF03704 BTAD: Bacterial trans 96.7 0.039 8.4E-07 52.4 14.0 100 425-540 16-124 (146)
255 PF03704 BTAD: Bacterial trans 96.7 0.047 1E-06 51.9 14.4 61 606-666 64-124 (146)
256 KOG2796 Uncharacterized conser 96.7 0.026 5.7E-07 58.7 13.2 137 377-513 169-320 (366)
257 PF12968 DUF3856: Domain of Un 96.6 0.067 1.4E-06 49.5 13.6 105 384-508 8-129 (144)
258 PF13181 TPR_8: Tetratricopept 96.6 0.0032 6.8E-08 44.4 4.0 31 639-669 2-32 (34)
259 PF13181 TPR_8: Tetratricopept 96.5 0.0044 9.6E-08 43.6 4.3 34 604-637 1-34 (34)
260 KOG2838 Uncharacterized conser 96.5 0.0022 4.8E-08 66.2 3.5 71 178-248 127-197 (401)
261 COG0790 FOG: TPR repeat, SEL1 96.5 0.2 4.3E-06 53.2 18.7 157 385-545 75-270 (292)
262 COG0790 FOG: TPR repeat, SEL1 96.4 1 2.3E-05 47.7 23.6 206 388-677 46-276 (292)
263 KOG3081 Vesicle coat complex C 96.3 0.72 1.6E-05 48.5 20.8 159 385-546 110-276 (299)
264 PF02259 FAT: FAT domain; Int 96.3 0.56 1.2E-05 50.8 21.5 171 475-670 142-341 (352)
265 KOG1585 Protein required for f 96.3 0.51 1.1E-05 49.0 19.2 159 486-660 78-249 (308)
266 KOG3616 Selective LIM binding 96.2 0.32 7E-06 56.8 19.3 66 613-678 959-1046(1636)
267 KOG1070 rRNA processing protei 96.2 0.6 1.3E-05 58.3 22.4 235 398-655 1439-1686(1710)
268 KOG2610 Uncharacterized conser 96.2 0.14 2.9E-06 55.2 14.9 84 462-545 120-208 (491)
269 PF10300 DUF3808: Protein of u 96.2 0.11 2.3E-06 59.7 15.6 116 429-544 247-379 (468)
270 KOG3617 WD40 and TPR repeat-co 96.1 0.37 8E-06 57.1 19.3 55 607-666 941-995 (1416)
271 smart00028 TPR Tetratricopepti 96.1 0.0078 1.7E-07 39.8 3.6 32 639-670 2-33 (34)
272 PF02259 FAT: FAT domain; Int 96.0 1.9 4.2E-05 46.5 23.7 148 567-714 142-341 (352)
273 smart00512 Skp1 Found in Skp1 95.9 0.027 6E-07 50.9 7.5 81 184-267 4-104 (104)
274 PF10300 DUF3808: Protein of u 95.9 0.66 1.4E-05 53.3 20.4 161 462-683 250-429 (468)
275 PRK10941 hypothetical protein; 95.9 0.058 1.2E-06 57.3 10.7 67 481-547 183-250 (269)
276 PF11822 DUF3342: Domain of un 95.9 0.0096 2.1E-07 63.8 4.8 90 191-282 14-104 (317)
277 PRK10941 hypothetical protein; 95.9 0.055 1.2E-06 57.5 10.4 59 589-647 200-258 (269)
278 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.041 8.8E-07 43.8 7.1 45 513-563 2-46 (53)
279 PF13174 TPR_6: Tetratricopept 95.8 0.011 2.3E-07 41.1 3.4 32 639-670 1-32 (33)
280 PF04184 ST7: ST7 protein; In 95.8 0.34 7.3E-06 54.9 16.6 59 482-540 262-323 (539)
281 COG3118 Thioredoxin domain-con 95.8 0.19 4E-06 53.5 13.8 125 388-512 139-269 (304)
282 KOG0529 Protein geranylgeranyl 95.6 0.9 1.9E-05 50.4 18.5 99 590-692 169-285 (421)
283 KOG2300 Uncharacterized conser 95.6 2.8 6E-05 47.5 22.3 194 395-644 287-525 (629)
284 smart00028 TPR Tetratricopepti 95.5 0.021 4.5E-07 37.7 3.9 31 480-510 2-32 (34)
285 COG2976 Uncharacterized protei 95.5 0.71 1.5E-05 46.5 15.8 78 449-542 38-119 (207)
286 PF04781 DUF627: Protein of un 95.4 0.072 1.6E-06 48.7 7.8 87 422-508 3-107 (111)
287 PF14561 TPR_20: Tetratricopep 95.3 0.098 2.1E-06 46.2 8.5 77 463-539 6-85 (90)
288 KOG0985 Vesicle coat protein c 95.3 8.2 0.00018 47.4 26.3 187 477-676 1102-1317(1666)
289 PF08631 SPO22: Meiosis protei 95.3 4.9 0.00011 42.8 24.5 99 383-508 35-150 (278)
290 PF12968 DUF3856: Domain of Un 95.3 0.31 6.8E-06 45.2 11.6 63 479-541 55-129 (144)
291 COG4941 Predicted RNA polymera 95.2 0.18 3.8E-06 54.3 11.5 191 462-679 213-407 (415)
292 PF13176 TPR_7: Tetratricopept 95.2 0.027 5.9E-07 40.7 3.9 29 640-668 1-29 (36)
293 PF10345 Cohesin_load: Cohesin 95.1 9.9 0.00021 45.2 30.5 304 377-685 53-463 (608)
294 PF13176 TPR_7: Tetratricopept 95.1 0.031 6.8E-07 40.4 3.9 29 481-509 1-29 (36)
295 KOG1665 AFH1-interacting prote 95.0 0.06 1.3E-06 54.5 6.9 93 181-276 8-105 (302)
296 PF05843 Suf: Suppressor of fo 95.0 0.32 7E-06 51.9 13.0 84 589-672 55-141 (280)
297 KOG2714 SETA binding protein S 94.9 0.072 1.6E-06 58.8 7.5 90 184-277 13-110 (465)
298 COG2909 MalT ATP-dependent tra 94.8 9.2 0.0002 46.4 25.1 264 386-667 350-647 (894)
299 PF14561 TPR_20: Tetratricopep 94.8 0.23 5E-06 43.9 9.3 76 590-665 8-85 (90)
300 PF10345 Cohesin_load: Cohesin 94.8 11 0.00025 44.7 26.5 178 478-667 403-606 (608)
301 PF04781 DUF627: Protein of un 94.8 0.088 1.9E-06 48.2 6.6 87 583-669 9-110 (111)
302 KOG1310 WD40 repeat protein [G 94.7 0.12 2.5E-06 58.5 8.6 84 462-545 391-478 (758)
303 PF13174 TPR_6: Tetratricopept 94.5 0.061 1.3E-06 37.2 3.9 33 605-637 1-33 (33)
304 KOG3824 Huntingtin interacting 94.4 0.092 2E-06 55.8 6.8 72 609-680 121-193 (472)
305 KOG1310 WD40 repeat protein [G 94.4 0.11 2.5E-06 58.6 7.7 88 589-676 393-483 (758)
306 PF08424 NRDE-2: NRDE-2, neces 94.3 1.5 3.2E-05 47.9 16.2 29 607-635 157-185 (321)
307 PF13374 TPR_10: Tetratricopep 94.2 0.07 1.5E-06 38.8 4.0 32 638-669 2-33 (42)
308 PF05843 Suf: Suppressor of fo 94.0 1 2.2E-05 48.1 13.9 84 462-545 53-140 (280)
309 KOG2471 TPR repeat-containing 93.9 1 2.2E-05 50.9 13.8 92 604-695 283-402 (696)
310 KOG1724 SCF ubiquitin ligase, 93.8 0.18 3.9E-06 49.5 7.0 92 189-283 13-128 (162)
311 PF14853 Fis1_TPR_C: Fis1 C-te 93.8 0.18 4E-06 40.1 5.7 32 641-672 4-35 (53)
312 COG3914 Spy Predicted O-linked 93.7 1.4 3E-05 50.9 14.7 89 459-547 81-177 (620)
313 KOG1585 Protein required for f 93.7 5 0.00011 42.0 17.2 158 384-541 32-219 (308)
314 COG2909 MalT ATP-dependent tra 93.6 23 0.00049 43.2 25.5 233 347-580 417-687 (894)
315 COG4976 Predicted methyltransf 93.1 0.28 6.1E-06 50.4 7.3 58 615-672 6-63 (287)
316 KOG4507 Uncharacterized conser 93.1 0.33 7.2E-06 55.6 8.5 84 425-511 617-708 (886)
317 COG3914 Spy Predicted O-linked 92.9 1.6 3.6E-05 50.3 13.8 127 498-649 50-185 (620)
318 PF08424 NRDE-2: NRDE-2, neces 92.7 4 8.6E-05 44.5 16.2 158 464-668 4-184 (321)
319 PF07079 DUF1347: Protein of u 92.6 22 0.00048 40.3 24.9 65 614-682 472-539 (549)
320 KOG4507 Uncharacterized conser 92.5 0.31 6.6E-06 55.9 7.2 127 580-707 616-754 (886)
321 COG4976 Predicted methyltransf 92.4 0.2 4.3E-06 51.5 5.1 49 462-510 12-60 (287)
322 COG2912 Uncharacterized conser 92.3 1 2.3E-05 47.5 10.5 58 590-647 201-258 (269)
323 COG4941 Predicted RNA polymera 92.1 2 4.4E-05 46.5 12.3 125 495-645 272-406 (415)
324 PF03931 Skp1_POZ: Skp1 family 92.0 0.65 1.4E-05 38.0 6.9 56 184-244 3-59 (62)
325 PF13374 TPR_10: Tetratricopep 91.6 0.29 6.4E-06 35.5 4.0 30 479-508 2-31 (42)
326 PF11207 DUF2989: Protein of u 91.4 2.2 4.7E-05 43.3 11.2 82 576-658 112-198 (203)
327 KOG3824 Huntingtin interacting 91.4 0.63 1.4E-05 49.7 7.6 58 462-519 133-191 (472)
328 KOG0890 Protein kinase of the 90.7 41 0.00088 45.3 23.8 313 388-704 1388-1784(2382)
329 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.37 8E-06 35.6 3.6 30 480-509 2-31 (38)
330 PF12862 Apc5: Anaphase-promot 90.3 1.1 2.3E-05 39.7 7.1 56 615-670 9-73 (94)
331 PF07721 TPR_4: Tetratricopept 89.9 0.38 8.3E-06 32.1 3.0 25 639-663 2-26 (26)
332 PF04910 Tcf25: Transcriptiona 89.4 15 0.00033 40.8 16.8 156 470-643 31-232 (360)
333 KOG0529 Protein geranylgeranyl 89.2 10 0.00022 42.4 14.8 94 590-683 131-241 (421)
334 PF09613 HrpB1_HrpK: Bacterial 89.1 3.3 7.1E-05 40.6 9.9 64 590-653 30-93 (160)
335 PF07079 DUF1347: Protein of u 89.0 47 0.001 37.8 21.5 81 253-333 261-353 (549)
336 COG2912 Uncharacterized conser 88.9 1.4 3.1E-05 46.5 7.9 69 610-678 187-256 (269)
337 KOG2300 Uncharacterized conser 88.4 26 0.00057 40.0 17.4 154 384-545 324-518 (629)
338 PF10579 Rapsyn_N: Rapsyn N-te 87.9 1.6 3.5E-05 37.6 6.1 63 607-669 9-74 (80)
339 PF09613 HrpB1_HrpK: Bacterial 87.9 5.8 0.00013 38.9 10.7 62 611-672 17-78 (160)
340 KOG0985 Vesicle coat protein c 87.8 13 0.00029 45.7 15.4 153 384-547 1105-1314(1666)
341 KOG3616 Selective LIM binding 87.7 8.4 0.00018 45.6 13.4 39 273-311 462-503 (1636)
342 KOG0511 Ankyrin repeat protein 87.6 0.19 4.1E-06 54.6 0.4 86 182-272 150-236 (516)
343 PF01466 Skp1: Skp1 family, di 87.5 1.1 2.4E-05 38.4 5.0 43 250-292 11-55 (78)
344 COG3629 DnrI DNA-binding trans 87.4 3.7 7.9E-05 43.9 9.8 88 605-706 154-241 (280)
345 KOG2396 HAT (Half-A-TPR) repea 87.3 4 8.7E-05 46.5 10.4 83 590-672 91-174 (568)
346 COG5201 SKP1 SCF ubiquitin lig 87.3 2.6 5.7E-05 39.4 7.5 96 183-283 3-123 (158)
347 PRK13184 pknD serine/threonine 87.0 54 0.0012 41.0 20.8 96 448-547 481-587 (932)
348 PF10516 SHNi-TPR: SHNi-TPR; 86.9 0.82 1.8E-05 33.8 3.3 32 638-669 1-32 (38)
349 PF09986 DUF2225: Uncharacteri 86.7 5.2 0.00011 41.1 10.3 92 394-508 88-194 (214)
350 KOG3364 Membrane protein invol 86.6 5.7 0.00012 37.9 9.5 67 480-546 33-105 (149)
351 PF09986 DUF2225: Uncharacteri 86.6 12 0.00025 38.6 12.8 33 606-638 167-199 (214)
352 PF10255 Paf67: RNA polymerase 85.2 1.3 2.8E-05 49.7 5.4 107 417-545 124-232 (404)
353 KOG0546 HSP90 co-chaperone CPR 84.8 0.88 1.9E-05 49.6 3.7 53 590-642 295-347 (372)
354 KOG0546 HSP90 co-chaperone CPR 84.4 1.1 2.4E-05 48.8 4.2 116 388-512 227-342 (372)
355 PF07721 TPR_4: Tetratricopept 84.2 1.3 2.7E-05 29.6 3.0 26 604-629 1-26 (26)
356 COG4649 Uncharacterized protei 83.6 19 0.00041 36.0 11.8 56 388-443 63-122 (221)
357 PRK15180 Vi polysaccharide bio 83.4 9 0.0002 43.5 10.7 164 492-682 302-469 (831)
358 PF10579 Rapsyn_N: Rapsyn N-te 83.4 6.6 0.00014 33.9 7.6 57 479-535 6-66 (80)
359 PF10602 RPN7: 26S proteasome 83.3 16 0.00035 36.3 11.7 99 383-506 36-140 (177)
360 PF10373 EST1_DNA_bind: Est1 D 82.9 4.3 9.4E-05 42.4 8.0 61 464-524 1-62 (278)
361 COG4649 Uncharacterized protei 82.9 55 0.0012 32.9 14.7 44 607-651 170-213 (221)
362 PF10373 EST1_DNA_bind: Est1 D 82.7 3.8 8.2E-05 42.9 7.5 61 623-683 1-62 (278)
363 PF08631 SPO22: Meiosis protei 82.7 70 0.0015 34.0 17.5 161 490-666 4-185 (278)
364 TIGR02561 HrpB1_HrpK type III 82.7 6.8 0.00015 38.0 8.3 63 591-653 31-93 (153)
365 COG1747 Uncharacterized N-term 82.2 1.1E+02 0.0023 35.7 22.1 229 266-510 29-290 (711)
366 KOG3840 Uncharaterized conserv 82.0 2.2 4.8E-05 45.4 5.1 85 183-268 97-185 (438)
367 PF04910 Tcf25: Transcriptiona 81.9 43 0.00094 37.2 15.7 84 462-545 120-226 (360)
368 KOG2041 WD40 repeat protein [G 81.5 84 0.0018 37.7 17.7 26 480-505 797-822 (1189)
369 PF15015 NYD-SP12_N: Spermatog 81.3 6.3 0.00014 44.1 8.5 103 423-537 184-287 (569)
370 KOG3783 Uncharacterized conser 80.7 62 0.0013 37.6 16.3 208 462-671 250-524 (546)
371 KOG1538 Uncharacterized conser 80.7 37 0.00081 40.1 14.5 187 388-632 637-845 (1081)
372 PF00244 14-3-3: 14-3-3 protei 80.5 29 0.00062 36.3 12.9 193 482-702 4-225 (236)
373 PF12862 Apc5: Anaphase-promot 79.8 6.8 0.00015 34.6 6.9 52 394-445 9-71 (94)
374 TIGR02561 HrpB1_HrpK type III 79.7 18 0.0004 35.1 10.1 56 617-672 23-78 (153)
375 PF10602 RPN7: 26S proteasome 78.6 24 0.00051 35.1 11.1 92 480-571 37-132 (177)
376 COG3014 Uncharacterized protei 78.6 66 0.0014 35.4 14.8 57 480-545 126-182 (449)
377 KOG3364 Membrane protein invol 77.4 7.5 0.00016 37.1 6.6 75 604-678 32-112 (149)
378 KOG3807 Predicted membrane pro 77.2 79 0.0017 34.7 14.9 106 519-638 282-396 (556)
379 PF11207 DUF2989: Protein of u 75.9 98 0.0021 31.6 14.5 81 448-531 110-197 (203)
380 KOG0890 Protein kinase of the 75.7 3E+02 0.0065 37.7 22.0 286 385-703 1672-1997(2382)
381 KOG1839 Uncharacterized protei 74.6 11 0.00024 47.4 8.9 154 386-540 935-1127(1236)
382 KOG2396 HAT (Half-A-TPR) repea 74.6 16 0.00035 41.9 9.3 51 590-640 125-176 (568)
383 KOG2715 Uncharacterized conser 73.8 24 0.00052 34.7 9.1 97 182-281 21-121 (210)
384 PF15015 NYD-SP12_N: Spermatog 72.9 9.1 0.0002 42.9 6.8 105 389-506 182-289 (569)
385 PF07720 TPR_3: Tetratricopept 72.6 10 0.00022 27.6 4.9 21 481-501 3-23 (36)
386 COG3629 DnrI DNA-binding trans 71.4 16 0.00035 39.1 8.2 63 479-541 153-216 (280)
387 cd02682 MIT_AAA_Arch MIT: doma 70.1 24 0.00052 30.2 7.4 23 389-411 12-34 (75)
388 PF07720 TPR_3: Tetratricopept 68.7 13 0.00027 27.1 4.7 31 639-669 2-34 (36)
389 COG4455 ImpE Protein of avirul 68.6 43 0.00093 34.8 10.0 96 613-708 10-119 (273)
390 PRK11619 lytic murein transgly 68.5 2.7E+02 0.0059 33.6 25.3 284 386-674 36-381 (644)
391 COG4455 ImpE Protein of avirul 67.9 70 0.0015 33.3 11.3 59 488-546 10-69 (273)
392 cd02683 MIT_1 MIT: domain cont 66.8 24 0.00052 30.2 6.8 21 390-410 13-33 (77)
393 KOG2041 WD40 repeat protein [G 64.8 2.7E+02 0.0059 33.7 16.5 141 379-538 792-936 (1189)
394 cd02682 MIT_AAA_Arch MIT: doma 64.2 36 0.00078 29.2 7.3 35 424-481 15-49 (75)
395 PHA02537 M terminase endonucle 63.9 39 0.00085 35.2 9.0 22 524-545 190-211 (230)
396 KOG1839 Uncharacterized protei 63.4 72 0.0016 40.7 12.5 166 483-667 936-1121(1236)
397 PRK15180 Vi polysaccharide bio 63.4 41 0.00088 38.5 9.4 135 524-682 301-445 (831)
398 KOG1778 CREB binding protein/P 62.3 4.6 9.9E-05 44.0 1.9 124 184-311 29-154 (319)
399 COG3947 Response regulator con 62.2 22 0.00047 38.3 6.8 57 483-539 283-340 (361)
400 PRK13184 pknD serine/threonine 62.1 46 0.00099 41.6 10.6 61 590-651 539-599 (932)
401 KOG4151 Myosin assembly protei 60.3 25 0.00054 42.3 7.5 100 420-545 58-160 (748)
402 PF04212 MIT: MIT (microtubule 60.3 17 0.00037 30.0 4.7 32 381-412 3-34 (69)
403 KOG0276 Vesicle coat complex C 60.1 1.1E+02 0.0024 36.1 12.3 48 646-703 729-777 (794)
404 KOG2114 Vacuolar assembly/sort 59.1 70 0.0015 39.0 10.9 94 555-662 418-514 (933)
405 COG5191 Uncharacterized conser 58.4 9.6 0.00021 41.2 3.4 50 592-641 129-179 (435)
406 PHA02537 M terminase endonucle 57.9 21 0.00045 37.2 5.7 33 606-638 171-212 (230)
407 KOG2422 Uncharacterized conser 57.4 2.8E+02 0.006 32.8 14.8 148 396-544 251-451 (665)
408 PRK11619 lytic murein transgly 57.4 4.2E+02 0.0091 32.0 21.4 169 491-692 324-513 (644)
409 KOG1258 mRNA processing protei 56.6 4E+02 0.0087 31.5 19.8 202 459-679 311-521 (577)
410 KOG4814 Uncharacterized conser 56.4 1.8E+02 0.0039 34.7 13.2 60 486-545 361-427 (872)
411 cd02679 MIT_spastin MIT: domai 56.2 17 0.00037 31.4 4.1 34 493-540 3-36 (79)
412 PF09670 Cas_Cas02710: CRISPR- 55.7 2.2E+02 0.0047 31.9 13.9 58 387-444 135-198 (379)
413 KOG2581 26S proteasome regulat 55.2 1.7E+02 0.0037 33.1 12.3 141 480-637 125-280 (493)
414 KOG2723 Uncharacterized conser 55.1 32 0.0007 35.5 6.5 92 181-277 7-105 (221)
415 smart00101 14_3_3 14-3-3 homol 54.3 2.9E+02 0.0062 29.1 20.8 200 482-702 4-227 (244)
416 KOG0686 COP9 signalosome, subu 54.2 2.1E+02 0.0046 32.3 12.9 136 349-506 114-256 (466)
417 PF12854 PPR_1: PPR repeat 52.0 32 0.00069 24.3 4.3 30 508-537 3-32 (34)
418 PF04053 Coatomer_WDAD: Coatom 51.3 4.3E+02 0.0093 30.3 16.1 131 395-545 273-406 (443)
419 COG5191 Uncharacterized conser 50.3 24 0.00051 38.3 4.8 81 592-672 95-176 (435)
420 KOG1914 mRNA cleavage and poly 49.8 5E+02 0.011 30.6 18.0 153 389-541 292-464 (656)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 2.3E+02 0.0049 26.5 10.9 95 346-442 24-126 (126)
422 cd02681 MIT_calpain7_1 MIT: do 48.9 31 0.00066 29.6 4.4 31 382-412 5-35 (76)
423 PF04053 Coatomer_WDAD: Coatom 48.7 49 0.0011 37.9 7.4 65 469-541 312-376 (443)
424 KOG2114 Vacuolar assembly/sort 47.7 25 0.00054 42.6 4.9 77 613-700 343-422 (933)
425 cd02678 MIT_VPS4 MIT: domain c 46.5 36 0.00077 28.8 4.5 32 381-412 4-35 (75)
426 PF05053 Menin: Menin; InterP 46.3 1.2E+02 0.0027 35.4 10.0 59 383-441 277-344 (618)
427 KOG4014 Uncharacterized conser 46.2 1.5E+02 0.0032 30.1 9.3 173 494-683 8-214 (248)
428 PF11846 DUF3366: Domain of un 45.5 47 0.001 33.1 6.0 52 494-545 126-177 (193)
429 PF04190 DUF410: Protein of un 44.7 4E+02 0.0087 28.1 18.3 131 477-620 88-244 (260)
430 COG2015 Alkyl sulfatase and re 44.6 1.1E+02 0.0024 35.2 9.0 40 585-624 466-506 (655)
431 PF11846 DUF3366: Domain of un 44.6 62 0.0013 32.2 6.7 45 590-635 131-175 (193)
432 KOG0687 26S proteasome regulat 44.2 1.5E+02 0.0032 32.6 9.6 99 415-540 104-202 (393)
433 cd02680 MIT_calpain7_2 MIT: do 44.0 34 0.00073 29.3 3.9 31 382-412 5-35 (75)
434 PF09670 Cas_Cas02710: CRISPR- 43.6 1.3E+02 0.0027 33.8 9.6 121 421-542 137-271 (379)
435 KOG4279 Serine/threonine prote 43.3 1.3E+02 0.0027 36.6 9.5 200 384-651 202-413 (1226)
436 PF05053 Menin: Menin; InterP 43.2 45 0.00098 38.9 5.9 45 462-506 296-345 (618)
437 smart00745 MIT Microtubule Int 43.0 45 0.00097 28.0 4.6 31 382-412 7-37 (77)
438 cd02678 MIT_VPS4 MIT: domain c 41.9 94 0.002 26.2 6.4 31 399-442 3-33 (75)
439 KOG1538 Uncharacterized conser 41.9 1.5E+02 0.0032 35.4 9.7 47 617-666 786-832 (1081)
440 KOG4151 Myosin assembly protei 41.7 48 0.001 40.0 6.0 107 381-512 51-160 (748)
441 TIGR02710 CRISPR-associated pr 41.7 1.2E+02 0.0027 33.9 9.0 148 520-689 138-297 (380)
442 COG1747 Uncharacterized N-term 41.2 6.6E+02 0.014 29.5 18.7 197 381-607 97-296 (711)
443 cd02683 MIT_1 MIT: domain cont 40.8 44 0.00096 28.6 4.2 32 400-444 4-35 (77)
444 cd02677 MIT_SNX15 MIT: domain 40.5 44 0.00096 28.5 4.1 33 380-412 3-35 (75)
445 cd02677 MIT_SNX15 MIT: domain 40.3 32 0.00069 29.4 3.2 15 652-666 20-34 (75)
446 TIGR03504 FimV_Cterm FimV C-te 40.0 82 0.0018 24.1 5.1 24 483-506 3-26 (44)
447 cd02656 MIT MIT: domain contai 39.5 57 0.0012 27.3 4.7 31 382-412 5-35 (75)
448 smart00745 MIT Microtubule Int 38.4 1.7E+02 0.0036 24.5 7.5 29 399-440 5-33 (77)
449 KOG3807 Predicted membrane pro 38.3 6E+02 0.013 28.2 16.8 58 479-540 273-335 (556)
450 cd02680 MIT_calpain7_2 MIT: do 38.1 49 0.0011 28.3 4.0 33 399-444 3-35 (75)
451 KOG3783 Uncharacterized conser 38.0 7.3E+02 0.016 29.2 18.9 72 475-546 444-525 (546)
452 KOG1920 IkappaB kinase complex 37.9 1E+03 0.022 30.8 18.7 157 468-665 924-1091(1265)
453 KOG1464 COP9 signalosome, subu 37.6 5.6E+02 0.012 27.7 12.4 96 445-540 148-259 (440)
454 PF09797 NatB_MDM20: N-acetylt 37.2 1.1E+02 0.0023 33.9 7.8 58 589-650 202-259 (365)
455 PF10255 Paf67: RNA polymerase 36.4 63 0.0014 36.5 5.7 59 481-540 124-192 (404)
456 KOG4279 Serine/threonine prote 35.9 1.4E+02 0.003 36.2 8.4 108 523-679 298-405 (1226)
457 KOG4814 Uncharacterized conser 35.3 2.2E+02 0.0047 34.1 9.7 61 480-540 395-456 (872)
458 cd09248 BRO1_Rhophilin_1 Prote 34.6 7.2E+02 0.016 28.1 14.8 18 652-669 299-316 (384)
459 KOG2581 26S proteasome regulat 34.3 1.6E+02 0.0035 33.2 8.2 71 378-448 204-280 (493)
460 PF12739 TRAPPC-Trs85: ER-Golg 34.0 7.3E+02 0.016 28.0 16.2 23 485-507 214-236 (414)
461 TIGR03504 FimV_Cterm FimV C-te 33.5 80 0.0017 24.1 4.1 30 642-672 3-32 (44)
462 cd02684 MIT_2 MIT: domain cont 33.2 77 0.0017 27.0 4.5 31 382-412 5-35 (75)
463 PF13041 PPR_2: PPR repeat fam 33.1 1.7E+02 0.0036 22.0 6.1 37 479-515 3-41 (50)
464 PF04212 MIT: MIT (microtubule 33.0 77 0.0017 26.1 4.4 25 608-632 9-33 (69)
465 PF12854 PPR_1: PPR repeat 31.9 83 0.0018 22.2 3.8 27 478-504 6-32 (34)
466 KOG0276 Vesicle coat complex C 30.9 2.9E+02 0.0064 32.8 9.8 66 469-542 631-696 (794)
467 cd02679 MIT_spastin MIT: domai 30.9 69 0.0015 27.7 3.8 19 615-633 19-37 (79)
468 KOG4521 Nuclear pore complex, 30.8 1.3E+03 0.028 29.9 18.2 127 387-529 924-1071(1480)
469 PF01239 PPTA: Protein prenylt 30.7 1E+02 0.0022 21.1 4.0 26 466-491 4-29 (31)
470 PF11817 Foie-gras_1: Foie gra 29.8 3.1E+02 0.0067 28.6 9.3 75 363-437 155-240 (247)
471 PF00244 14-3-3: 14-3-3 protei 29.6 6.6E+02 0.014 26.1 13.5 36 599-634 160-199 (236)
472 smart00386 HAT HAT (Half-A-TPR 29.6 1.2E+02 0.0027 19.7 4.4 20 620-639 3-22 (33)
473 COG5107 RNA14 Pre-mRNA 3'-end 29.2 9.5E+02 0.021 27.9 17.3 220 467-689 290-555 (660)
474 KOG1464 COP9 signalosome, subu 29.0 1.1E+02 0.0025 32.7 5.7 75 617-692 204-293 (440)
475 smart00671 SEL1 Sel1-like repe 28.7 1.1E+02 0.0024 20.9 4.0 29 639-667 2-34 (36)
476 cd02681 MIT_calpain7_1 MIT: do 28.5 74 0.0016 27.3 3.6 26 608-633 10-35 (76)
477 KOG4422 Uncharacterized conser 28.1 9.6E+02 0.021 27.7 12.8 68 388-455 527-601 (625)
478 smart00777 Mad3_BUB1_I Mad3/BU 27.4 3.8E+02 0.0082 25.3 8.4 93 345-439 23-123 (125)
479 PF14863 Alkyl_sulf_dimr: Alky 27.3 4.2E+02 0.0092 25.4 8.9 35 511-545 69-103 (141)
480 PF15469 Sec5: Exocyst complex 26.1 2.3E+02 0.005 27.9 7.3 24 522-545 96-119 (182)
481 PF13041 PPR_2: PPR repeat fam 25.9 2.2E+02 0.0048 21.4 5.6 36 510-545 1-38 (50)
482 PF08238 Sel1: Sel1 repeat; I 25.4 1.2E+02 0.0025 21.3 3.7 30 638-667 1-37 (39)
483 PF14863 Alkyl_sulf_dimr: Alky 25.1 1.8E+02 0.0038 28.0 5.9 53 604-656 70-122 (141)
484 KOG1938 Protein with predicted 25.0 1.1E+03 0.023 29.9 13.5 96 613-709 325-441 (960)
485 KOG2460 Signal recognition par 24.9 8.9E+02 0.019 28.5 12.1 204 462-689 277-498 (593)
486 smart00299 CLH Clathrin heavy 24.9 3E+02 0.0066 25.4 7.6 73 462-535 24-105 (140)
487 COG3947 Response regulator con 24.6 1.3E+02 0.0028 32.6 5.3 52 451-505 288-339 (361)
488 PF01239 PPTA: Protein prenylt 24.4 1.7E+02 0.0036 20.0 4.2 24 592-615 5-28 (31)
489 KOG2997 F-box protein FBX9 [Ge 24.2 1.1E+02 0.0025 33.3 4.8 34 642-675 23-57 (366)
490 PF02064 MAS20: MAS20 protein 23.4 1.4E+02 0.0031 27.9 4.8 33 483-515 67-99 (121)
491 COG4259 Uncharacterized protei 23.3 2E+02 0.0044 26.2 5.4 46 404-449 58-106 (121)
492 COG5159 RPN6 26S proteasome re 23.0 1E+03 0.022 26.0 17.6 263 388-669 8-316 (421)
493 KOG2422 Uncharacterized conser 22.7 3.1E+02 0.0066 32.5 8.1 64 609-672 347-417 (665)
494 COG5536 BET4 Protein prenyltra 22.1 5.7E+02 0.012 27.7 9.3 163 433-610 50-233 (328)
495 COG5187 RPN7 26S proteasome re 22.0 8.4E+02 0.018 26.7 10.5 108 397-507 89-220 (412)
496 PF07219 HemY_N: HemY protein 21.5 6E+02 0.013 22.8 8.5 49 382-430 58-108 (108)
497 COG3014 Uncharacterized protei 20.8 9.5E+02 0.021 26.8 10.8 129 373-511 115-245 (449)
498 KOG4459 Membrane-associated pr 20.7 1.1E+02 0.0024 34.9 4.0 87 607-702 136-222 (471)
499 PF10938 YfdX: YfdX protein; 20.7 4.7E+02 0.01 25.4 8.0 61 480-540 76-145 (155)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-36 Score=327.88 Aligned_cols=296 Identities=17% Similarity=0.085 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc--
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-- 458 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~-- 458 (721)
+++|-++|++...+|+.-+|+..|++|++++ ..+||+++|+||-..+.++.|+..|.+|+...|+.+.+|-|.+-+
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 6889999999999999999999999999995 567899999999999999999999999999999766665444321
Q ss_pred --CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 459 --CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 459 --~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
|..+-||..|++||+++|++++||+|+|+++-+.|+..||...|++||.+.|+ ++..+++|.++.++|.+++|++-|
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 23399999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
.++++..|.+. ++.+.++.+...+...++| +.+|..||.++|..++++.|+|+++-
T Consensus 378 ~~al~v~p~~a------aa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 378 LKALEVFPEFA------AAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHhhChhhh------hhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHHH
Confidence 99999999984 4555555555555555555 89999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc--CCC-CCch
Q 004984 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS--SQD-SSCS 691 (721)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~--~~~-~~~~ 691 (721)
.+|+..+|+.+|.+|+..+|..+||+.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-|++-++-=- ..| ..--
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999876321 122 1223
Q ss_pred hhHHHHHHHhh
Q 004984 692 STVVSLLEDAL 702 (721)
Q Consensus 692 ~~~~~~~~~~~ 702 (721)
.++++..+|-+
T Consensus 514 ~kl~sivrdql 524 (966)
T KOG4626|consen 514 KKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHH
Confidence 56677766655
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-35 Score=318.29 Aligned_cols=338 Identities=15% Similarity=0.098 Sum_probs=295.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS 440 (721)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~ 440 (721)
+....+.+.++++.+++ ..+|.++|.++...|+...|..+|..||.++| ..+...+|.+.-..|+..+|..+|.+
T Consensus 133 ~~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 34445556666665654 57888999999999999999999999999976 66788899999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 004984 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL 515 (721)
Q Consensus 441 aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~ 515 (721)
||+..|.++.+|.+.|-. |....||..|++|+.|||++.+||+|+|++|-+.+++++|+..|.||+.+.|+ ...+
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~ 289 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH 289 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc
Confidence 999999877777777642 44499999999999999999999999999999999999999999999999997 6667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh-hHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhccccccc
Q 004984 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG-RVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVDD 586 (721)
Q Consensus 516 ~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~-~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~dd 586 (721)
-+.+.+|.++|+.+-||..|+++|+++|++..++. -+.+....|.+.+.++-+.+ ||++.+|+........
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999977554 44577777888777776555 5667788888778888
Q ss_pred cc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 587 IG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 587 ~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
++ |...|..+|+..|..+.+++|+|.++..+|...+|+..|+.|++++|..++++.|+|..|-.+|+.++|++.|++||
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 88 88899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCC
Q 004984 666 QMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD 707 (721)
Q Consensus 666 ~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (721)
.++|.|+ |+.|.|-+.-||+==|+ -|+--++|||=--|
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~----AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPE----AIQSYRTALKLKPD 488 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHH----HHHHHHHHHccCCC
Confidence 9999999 99999999999875443 57778888875444
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=300.60 Aligned_cols=219 Identities=19% Similarity=0.263 Sum_probs=196.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+...+.+|||++.+++++|+|||+||||+||||++||+++|+|+.+.+|+|.+ |++.+|..+++|+|||++. ++.+|
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~-i~~~n 106 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLE-ISEDN 106 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEE-echHh
Confidence 56889999999999999999999999999999999999999999999999994 9999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (721)
|++||.+|++||++.+++.|++||.++++ ++||+++..+|+.|+|++|......++.+||.+ .|+.+++.+
T Consensus 107 Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 107 VQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 99999999999999999999999999995 899999999999999999999999999888865 788999999
Q ss_pred HhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHH---hhhHHHHHHHHH-HHHHHHHHhccchHHH
Q 004984 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE---SAETDRQRLLAF-HQLGCVRLLRKEYDEA 402 (721)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~---~a~~~lq~~la~-~~lG~~~~~~g~y~eA 402 (721)
++++++++ |..|+.++.++++||++|...|..++..+|+. ++ +++.++.+.+.. -.+.....++.-..+|
T Consensus 186 ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea 259 (571)
T KOG4441|consen 186 LLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA 259 (571)
T ss_pred hccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 99999996 88899999999999999998889999999998 55 445555554433 2334445555666777
Q ss_pred H
Q 004984 403 E 403 (721)
Q Consensus 403 ~ 403 (721)
.
T Consensus 260 ~ 260 (571)
T KOG4441|consen 260 K 260 (571)
T ss_pred H
Confidence 6
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=296.59 Aligned_cols=189 Identities=14% Similarity=0.236 Sum_probs=170.6
Q ss_pred ccCCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCCCCcCC-cceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984 175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~-~~~~~aHr~vLAa~S~yF~amF~~~~~Es~-~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~ 252 (721)
+..++.+|||+|+|+ |++|+|||.||||+|+||++||+++|+|+. +.+|+|. ++++++|+.||+|+|||+ ++.
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~ 93 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS 93 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence 457788999999997 899999999999999999999999999875 7899998 599999999999999996 568
Q ss_pred HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHH
Q 004984 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (721)
Q Consensus 253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (721)
+||++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+++.+||.+ .|+.+++
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l 172 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL 172 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence 9999999999999999999999999999995 899999999988899989999999999999865 6888999
Q ss_pred HHHhcccc-ccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 004984 325 VEIFSHAN-RQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (721)
Q Consensus 325 ~~ll~~~~-~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a 376 (721)
.++|++++ ++ |..|+.+++++++||+||+..|. +..+||++ +|++
T Consensus 173 ~~lL~~d~~l~-----v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~ 218 (557)
T PHA02713 173 FDIISTNDNVY-----LYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ 218 (557)
T ss_pred HHHhccccccC-----CCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence 99999987 43 88899999999999999987554 45688877 5654
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=3.7e-30 Score=292.43 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=155.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+.-.+.+|||++++|+ +|+|||+|||++||||++||+++|+|+++ +|++...+|++++|+.||+|+|||++. ++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~n 92 (480)
T PHA02790 16 LSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHN 92 (480)
T ss_pred HHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-Eeccc
Confidence 3457889999998765 79999999999999999999999999965 566531259999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCCh--HH-----HHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ER-----VVEI 327 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~--~~-----v~~l 327 (721)
|++||.+|++||++.+++.|++||.+.++ ++||++++.+|..|+++.|.+.+.+++.+||.+.... ++ +.++
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~l 171 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLI 171 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHh
Confidence 99999999999999999999999999995 8999999999999999999999999999999875432 22 4678
Q ss_pred hccccccchhhhcccchhhHHHHHHHhhhc
Q 004984 328 FSHANRQHRSIMVGLASFSLYCLLSEVAMN 357 (721)
Q Consensus 328 l~~~~~~~r~~~v~~~~~~~~~~l~wV~~d 357 (721)
|++++++ |..|+.+++++++||+++
T Consensus 172 Lssd~L~-----v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 172 LESDELN-----VPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred cccccCC-----CccHHHHHHHHHHHHHhh
Confidence 9999885 889999999999999985
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=6.4e-27 Score=273.94 Aligned_cols=283 Identities=13% Similarity=0.061 Sum_probs=238.9
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+...+++++++.++ ...+.++|.++..+|++++|+.+|++||+++| ..+++.+|.++..+|++++|+.+|
T Consensus 142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556777788887776553 45688999999999999999999999999954 457888999999999999998887
Q ss_pred HHHHhcCC---------------------------------------------------------------CcHHHHHHH
Q 004984 439 NSVISSVT---------------------------------------------------------------PLGWMYQER 455 (721)
Q Consensus 439 ~~aI~~~~---------------------------------------------------------------~~~~ay~~r 455 (721)
..+....+ ..+.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 65543221 111111222
Q ss_pred hh-------cCChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984 456 SL-------YCEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (721)
Q Consensus 456 g~-------~~~~~eAl~d~~kAieL---dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (721)
|. .+.+++|+..|++|+++ +|+.+.+|.++|.++..+|++++|+..|+++|+++|+ +..+..+|.++..
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 12458999999999987 5889999999999999999999999999999999997 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~ 604 (721)
+|++++|+.+|+++++++|++.. +...++.+.....++++| +.+++++++++|.+.
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A------------------~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPD------IYYHRAQLHFIKGEFAQA------------------GKDYQKSIDLDPDFI 433 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCccCH
Confidence 99999999999999999999843 444555555555566666 889999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
.+++++|.++.++|++++|+..++++++..|+++++++++|.++.++|++++|+..|++|++++|.+
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=3.8e-26 Score=267.42 Aligned_cols=312 Identities=15% Similarity=0.100 Sum_probs=229.3
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh------------------------
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------------------------ 416 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------------------------ 416 (721)
+.+.+...++.++...++. ..+++.+|.++...|+|++|+.+|.+++.+++..
T Consensus 175 ~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l 251 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEIL 251 (615)
T ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666654433 5688999999999999999999887665432100
Q ss_pred --------hHhhHHHH--------------------------H----------HHhCCHHHHHHHHHHHHhc---CCCcH
Q 004984 417 --------SIAGLARL--------------------------G----------YIKGHKLWAYEKLNSVISS---VTPLG 449 (721)
Q Consensus 417 --------A~~~lg~~--------------------------~----------~~~G~~~~A~~~~~~aI~~---~~~~~ 449 (721)
++..+|.. + ...+++++|++.|++++.. .|+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 252 ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 00011110 0 1136789999999999986 47788
Q ss_pred HHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984 450 WMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (721)
Q Consensus 450 ~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (721)
.+|..+|.+ ++.++|+.+|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ++.++.+|.++..
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888753 67799999999999999999999999999999999999999999999999996 8889999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~ 604 (721)
+|++++|+.+|+++++++|++.. +...++.+.....++++| +..+++++..+|.++
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~------~~~~la~~~~~~g~~~eA------------------~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIF------SHIQLGVTQYKEGSIASS------------------MATFRRCKKNFPEAP 467 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCh
Confidence 99999999999999999999854 233333333333444444 667777777777777
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWILYD-TSHCEEGLRKAEESIQMKRSFE-AFFL 676 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~Ly~-~G~~deAl~~ye~Ai~i~~~~~-a~~~ 676 (721)
.+++++|.++..+|++++|+..|++|++++|++...+ ++.+.+++. .|++++|+..+++|+.++|++. ++..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 7777777777777777777777777777777644332 333444444 5777777777777777777776 6666
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 677 KAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
.|.++...+- -..-|.++|.|++
T Consensus 548 la~~~~~~g~----~~eAi~~~e~A~~ 570 (615)
T TIGR00990 548 MAQLLLQQGD----VDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHccC----HHHHHHHHHHHHH
Confidence 7766665442 3344556666654
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=281.21 Aligned_cols=186 Identities=15% Similarity=0.221 Sum_probs=173.3
Q ss_pred CCCCCccEEEEE--cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 177 ~~~~~~DV~l~v--~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
.++.+|||+|++ +|++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 378899999998 9999999999999999999999999997 5789998 5 999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (721)
+++||.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..+++..|.+.|.+++..||.. .|+.+.+..
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 99999999999999999999999999995 899999999999999999999999999988854 678899999
Q ss_pred HhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 004984 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (721)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a 376 (721)
+|++++++ |..|..++.++++|+.++...|..++.+||+. +|++
T Consensus 157 ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~ 200 (534)
T PHA03098 157 ILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT 200 (534)
T ss_pred HhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence 99999985 88899999999999999998888899999988 6643
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=5.3e-24 Score=250.70 Aligned_cols=319 Identities=11% Similarity=-0.025 Sum_probs=263.0
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+......+++..+.-.+. ...+++++|.+....|++++|+..|+++++.+ +..++..+|.++...|++++|+..+
T Consensus 57 ~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555666665544332 36788999999999999999999999999984 4567889999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-H
Q 004984 439 NSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-L 512 (721)
Q Consensus 439 ~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~-~ 512 (721)
.++++++|++..++..++.. ++.++|+..|.+++.++|+++.++...+ .+...|++++|+..++++++.+| . .
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 99999999999888888653 6679999999999999999999998765 48899999999999999999876 3 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~ 592 (721)
..+...+.++...|++++|+..|+++++++|++.. +...++.+.....++++|. ..|+..
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------~~~~Lg~~l~~~G~~~eA~--------------~~A~~~ 272 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA------LRRSLGLAYYQSGRSREAK--------------LQAAEH 272 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCchhhH--------------HHHHHH
Confidence 33344577889999999999999999999999843 3344444444444444321 024889
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
++++++++|+++.++.++|.++..+|++++|+..+++|++++|++++++.++|.++..+|++++|++.|+++++.+|+..
T Consensus 273 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 273 WRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCC
Q 004984 673 -AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD 707 (721)
Q Consensus 673 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (721)
++...|.++...+ --..-+..++.|++.-.+
T Consensus 353 ~~~~~~a~al~~~G----~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAG----KTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHHhChh
Confidence 4555788886654 344556677887765333
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.3e-22 Score=241.65 Aligned_cols=334 Identities=16% Similarity=0.118 Sum_probs=259.5
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+....+++++.+..+.. ...+..++..+...|++++|+..|+++++. ++..++..+|.++...|++++|+..|
T Consensus 548 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455566666655443322 345567888888889999999999988876 34556778888999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984 439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (721)
Q Consensus 439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~ 513 (721)
+++++.+|+.+.++...+. .++.++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|+ +.
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 9999988887777776654 356689999999999999999999999999999999999999999998888885 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 004984 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD 585 (721)
Q Consensus 514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~d 585 (721)
.+..+|.++...|++++|+..|+++++.+|+.....+.+.+....+......+.+++ ...+..+.......+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 677788889999999999999999999998874433333333333222222222222 223344444444455
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A 664 (721)
+.. |+..|+++++.+|.++.++++.|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+|++++|+..|+++
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555 7889999999999999999999999999999 77999999999999999999999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984 665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (721)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (721)
++++|+.. ++++.|.++...+- -...+++++++|
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGR----KAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 99999766 88888888887643 445566666655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.4e-23 Score=247.13 Aligned_cols=285 Identities=14% Similarity=0.002 Sum_probs=248.0
Q ss_pred CCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHH
Q 004984 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEK 437 (721)
Q Consensus 360 ~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~ 437 (721)
.+.+.....+++++...++. ..++..+|.++...|++++|+..|++|++++ +..++..+|.++...|++++|+..
T Consensus 90 g~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 35567778888877765544 5577899999999999999999999999984 455778899999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHhh---cCChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984 438 LNSVISSVTPLGWMYQERSL---YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (721)
Q Consensus 438 ~~~aI~~~~~~~~ay~~rg~---~~~~~eAl~d~~kAieLdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~ 512 (721)
+.+++...|+.+.++..... .++.++|+..|+++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +
T Consensus 167 ~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 99999999988777655422 3566999999999999987 44455566789999999999999999999999996 7
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc
Q 004984 513 ECLELRFCFFLALEDYQA----ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~ee----Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~ 588 (721)
..++++|.++..+|++++ |+..|+++++++|++. .+...++.+.....++++|
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA----------------- 303 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKA----------------- 303 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHH-----------------
Confidence 888889999999999996 8999999999999983 4555556666666677777
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
+..++++++++|.++.++.++|.++.++|++++|+..|+++++.+|+++..+...|.++..+|++++|++.|+++++++
T Consensus 304 -~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 304 -IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999888889999999999999999999999998
Q ss_pred CCH
Q 004984 669 RSF 671 (721)
Q Consensus 669 ~~~ 671 (721)
|+.
T Consensus 383 P~~ 385 (656)
T PRK15174 383 ASH 385 (656)
T ss_pred hhh
Confidence 873
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.7e-23 Score=260.87 Aligned_cols=307 Identities=11% Similarity=-0.071 Sum_probs=224.2
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh----------------HhhHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS----------------IAGLARL 424 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A----------------~~~lg~~ 424 (721)
+.+.....++++++..++. ..+++.+|.++...|++++|+..|++|++.++... ....|.+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4567777888877654433 56788999999999999999999999998854321 1234778
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH------------
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS------------ 488 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~------------ 488 (721)
+..+|++++|+..|+++++.+|+...++..+|.. ++.++|+..|++|++++|++..++.+++.+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 8899999999999999999999988888877653 566999999999999999998887665554
Q ss_pred ------------------------------HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 489 ------------------------------LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 489 ------------------------------l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+...|++++|+..|+++++++|+ +..++.++.++..+|++++|+..|++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44679999999999999999996 77778899999999999999999999
Q ss_pred HHhhCCCchhhh-hhHHHHH----------HHH---------------------------HHHHhhhhhhHH--------
Q 004984 538 ILTLSPDYRMFE-GRVAASQ----------LHM---------------------------LVREHIDNWTIA-------- 571 (721)
Q Consensus 538 al~L~P~~~~~~-~~~~a~~----------~~~---------------------------~l~~~~~~~~~A-------- 571 (721)
+++++|++.... ..+.... ... .......+.++|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999885421 1110000 000 000001111111
Q ss_pred ---HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 572 ---DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (721)
Q Consensus 572 ---~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (721)
..++.+.+.....+++. |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|++..++..+|++
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 12223333333345555 66777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 004984 648 LYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 648 Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
+..+|++++|++.|++++++.|+
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCcc
Confidence 77777777777777777776543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=3.8e-22 Score=237.69 Aligned_cols=320 Identities=13% Similarity=0.067 Sum_probs=204.3
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLN 439 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~ 439 (721)
.+.....++++++..+.. ..+++++|.++...|++++|+..|+++++.+ +..++..++.++...|++++|+..+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555555433322 3455667777777777777777777777663 34456667777777777777777777
Q ss_pred HHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 004984 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (721)
Q Consensus 440 ~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~ 514 (721)
++++.+|.....+...+. .++.++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777777765555544432 245588888888888888888888888888888888888888888888888885 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhh--------hHHHHHHhhhhcccccc
Q 004984 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNW--------TIADCWLQLYDRWSSVD 585 (721)
Q Consensus 515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~--------~~A~~~~~l~~~~~~~d 585 (721)
+...+.++..+|++++|+..|+++++.+|++.... ..+......+......+.+ .....|..++......+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 67778888888888888888888888888864321 1111111111111111111 11112222222222334
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A 664 (721)
++. |+..+.+++..+|.+ ..+++.|.++.++|++++|+..++++++..|++..+++.+|.++..+|++++|+..|+++
T Consensus 718 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 444 566666666666666 556666666666666666666666666666666666666666666666666666666666
Q ss_pred HhcCCCHH-HHHHHHHHhhccC
Q 004984 665 IQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~ 685 (721)
+++.|++. +++..|+++....
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcC
Confidence 66666665 5565566555443
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.2e-22 Score=251.00 Aligned_cols=307 Identities=11% Similarity=-0.012 Sum_probs=240.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--------------
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------------- 450 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~-------------- 450 (721)
..+|..+...|++++|+..|++|++.+ ...++..+|.++..+|++++|+..|+++++..|+...
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 356999999999999999999999985 4567889999999999999999999999999987532
Q ss_pred HHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH-------
Q 004984 451 MYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR------- 518 (721)
Q Consensus 451 ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R------- 518 (721)
.+..+| ..++.++|+..|++|++++|+++.++..+|.++..+|++++|+..|++|++++|+ ...+..+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 112222 1255599999999999999999999999999999999999999999999999996 4443322
Q ss_pred -----------------------------------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 004984 519 -----------------------------------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (721)
Q Consensus 519 -----------------------------------~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~ 563 (721)
+.++...|++++|+..|+++++++|++.. +...++.+..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~ 506 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLR 506 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Confidence 33455789999999999999999999854 2233333334
Q ss_pred hhhhhhHHHHHHhhh---------------hccccccccc-hHHHHHH--------------------------------
Q 004984 564 HIDNWTIADCWLQLY---------------DRWSSVDDIG-SLSVIYQ-------------------------------- 595 (721)
Q Consensus 564 ~~~~~~~A~~~~~l~---------------~~~~~~dd~~-al~~~~q-------------------------------- 595 (721)
...++++|...++-. ..+...++.. |+..+++
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 444444443222211 1111122222 4444433
Q ss_pred --------HHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 596 --------MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 596 --------aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
.++.+|.++.+++.+|.++.++|++++|+..|+++++++|++++++.++|.++...|++++|++.|++++++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 245689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 668 KRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 668 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
.|+.. +.+..|.++.... -...-+++++.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP 699 (1157)
T ss_pred CCCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence 98876 7888888886533 24556667777765
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3e-22 Score=242.49 Aligned_cols=266 Identities=11% Similarity=-0.036 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh-hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
...+++++|.++.. +++.+|+..|.+++...|.. ...++|.++...|++++|+..|.+++...|... .+...|.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHHHHH
Confidence 45678999999987 89999999999999886543 234557777899999999999999877755433 3333332
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
.++.++|+..|++|++++|++...+..++..+..+|++++|+..|++|++++|++..+.++|.++.++|++++|+..|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3556999999999999999999999988888888999999999999999999998888899999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
++++++|++. .+...++.+.....++++| +..++++++++|+++.+++++|.++..
T Consensus 634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999994 3455555555555666666 889999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a 673 (721)
+|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|.--|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence 999999999999999999999999999999999999999999999999999998773
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.8e-22 Score=214.40 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (721)
Q Consensus 377 ~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~ 454 (721)
.+....+.++-+.|+-++..|.|++||++|.+||++.|. -.|.+++-+|...|++.+-+++.++|++++|+...+++.
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 334455788889999999999999999999999999665 346789999999999999999999999999999999998
Q ss_pred Hhh----cCChhHHHHHHHHHHhcCCCC----------------------------------------------------
Q 004984 455 RSL----YCEGDKRWEDLDKATALDPTL---------------------------------------------------- 478 (721)
Q Consensus 455 rg~----~~~~~eAl~d~~kAieLdP~~---------------------------------------------------- 478 (721)
|+. ++..++|+.|.+ ++-+.-++
T Consensus 189 RA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 853 233344444321 11111111
Q ss_pred ----------------------------------------------------------hHHHHHHHHHHHhcCCHHHHHH
Q 004984 479 ----------------------------------------------------------SYPYMYRASSLMTKQNVEAALA 500 (721)
Q Consensus 479 ----------------------------------------------------------~~ay~~rg~~l~~lg~~~eAl~ 500 (721)
+.++..||.-+.-.|++-+|..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 5677889999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984 501 EINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (721)
Q Consensus 501 ~~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (721)
+|+++|+++|.+ ..+..|+.+|....+-++-..+|++|..+||+|.. +++.++.+.-.++++++|
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A-------- 413 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEA-------- 413 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHH--------
Confidence 999999999974 44667999999999999999999999999999954 667777888888899999
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (721)
Q Consensus 580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~ 659 (721)
+++|+++++++|.++.+|..++.++.|+++.+++|..|+.+.+.-|+-+|.+..-|.+|.++++|+.|+.
T Consensus 414 ----------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 414 ----------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred ----------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC------HH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984 660 KAEESIQMKRS------FE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (721)
Q Consensus 660 ~ye~Ai~i~~~------~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (721)
.|++||.+.|. .. -+-.||..+.--. +--.--++||+.|+
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAI 530 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHH
Confidence 99999999998 44 5667777766532 22333455555554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.5e-21 Score=212.82 Aligned_cols=292 Identities=16% Similarity=0.034 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHhh
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL 457 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~----~~ay~~rg~ 457 (721)
...|.+|..+...|++++|+..|.++++.+|. .++..+|.++..+|++++|+..+++++...+.. ..++...|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 44577899999999999999999999999654 467889999999999999999999988853221 233333332
Q ss_pred ----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-H-----HHHHHHHHHHhcCC
Q 004984 458 ----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E-----CLELRFCFFLALED 527 (721)
Q Consensus 458 ----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~-----~~~~R~~~~~~lgd 527 (721)
.++.++|+..|+++++++|.+..++..+|.++...|++++|+..++++++..|.+ . .+..++.++...|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 1455999999999999999999999999999999999999999999999988752 1 23457788999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhH
Q 004984 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVL 606 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-~~~ 606 (721)
+++|+..|+++++++|++. .+...++.+.....++++| +..++++++.+|.+ ..+
T Consensus 196 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 196 LDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLSEV 251 (389)
T ss_pred HHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHHHH
Confidence 9999999999999999973 2444555555556666666 78899999999987 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHhhccC
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF-LKAYALADSS 685 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~-~~~~~~~~~~ 685 (721)
+..++.++..+|++++|+..++++++..|+.. .+..+|.++...|++++|+..++++++..|+...+. +-+..++...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 88999999999999999999999999999875 459999999999999999999999999999999665 3444443221
Q ss_pred CCCCchhhHHHHHHHhh
Q 004984 686 QDSSCSSTVVSLLEDAL 702 (721)
Q Consensus 686 ~~~~~~~~~~~~~~~~~ 702 (721)
..-....+.++|+.+
T Consensus 331 --~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 331 --EGRAKESLLLLRDLV 345 (389)
T ss_pred --CccchhHHHHHHHHH
Confidence 222334455555555
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=6.7e-21 Score=230.79 Aligned_cols=237 Identities=10% Similarity=-0.055 Sum_probs=143.0
Q ss_pred HHHHHHHHhcCCC--cHHHHHHHhhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 435 YEKLNSVISSVTP--LGWMYQERSLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (721)
Q Consensus 435 ~~~~~~aI~~~~~--~~~ay~~rg~~---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~ 509 (721)
+..+.+++...|. .+.+|+++|.+ ++.++|+..|.+++...|+.. ....+|.++...|++++|+..|++++...
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 3444444444444 45555554432 223445555555555555432 23333444445555555555555555444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH--------HHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984 510 LALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA--------ASQLHMLVREHIDNWTIADCWLQLYDRW 581 (721)
Q Consensus 510 P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~--------a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (721)
|....+...|.++...|++++|+..|+++++++|++........ .......++..++.-..++.|..+....
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l 619 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIY 619 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44333444455555555555555555555555555422111000 0000001111111111123333444444
Q ss_pred ccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984 582 SSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 582 ~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ 660 (721)
...++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|++++|+..
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444444 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH
Q 004984 661 AEESIQMKRSFE 672 (721)
Q Consensus 661 ye~Ai~i~~~~~ 672 (721)
|++|++++|++.
T Consensus 700 l~~Al~l~P~~a 711 (987)
T PRK09782 700 ARLVIDDIDNQA 711 (987)
T ss_pred HHHHHhcCCCCc
Confidence 999999999885
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.7e-21 Score=207.66 Aligned_cols=307 Identities=14% Similarity=0.140 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHH-
Q 004984 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLN- 439 (721)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~- 439 (721)
+.+...-..++.+.++. .+.|-|+.-+|...|++++-+++..+||+++|.| |++-++.++..+|++++|+.+.+
T Consensus 132 ~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 34445555556544432 5677899999999999999999999999998777 46667889999999999977664
Q ss_pred -----------------HHHh-----------------------------------------------------------
Q 004984 440 -----------------SVIS----------------------------------------------------------- 443 (721)
Q Consensus 440 -----------------~aI~----------------------------------------------------------- 443 (721)
+.+.
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 0000
Q ss_pred ------------------------cCC--------CcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHH
Q 004984 444 ------------------------SVT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRAS 487 (721)
Q Consensus 444 ------------------------~~~--------~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~ 487 (721)
... +.+.++..+|- .|..-+|-.||+++|.|+|.+...|..||.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~ 368 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAA 368 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHH
Confidence 000 01344444442 245588889999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhh
Q 004984 488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHI 565 (721)
Q Consensus 488 ~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~-a~~~~~~l~~~~ 565 (721)
+|+++++.++-..+|++|..+||+ ++-||.||.++.-++++++|+.||+++++|+|.++..+.+.. +.+..+.+...-
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 899999999999999999999999999999999977665544 455555555555
Q ss_pred hhhhHH--------HHHHhhhhccccccccc-hHHHHHHHHHhCCC------ChhHHHHHHHHHHH-cCChHHHHHHHHH
Q 004984 566 DNWTIA--------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP------KGVLYFRQSLLLLR-LNCPEAAMRSLQL 629 (721)
Q Consensus 566 ~~~~~A--------~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~------~~~~~~~~g~~L~~-lg~~eeAl~~~~~ 629 (721)
..++++ +++.=..+.+-+..+++ |+..|+.|+++.|. ++-.+.++|.++.+ .++..+|+..+++
T Consensus 449 ~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 449 KTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 555544 23333333344446666 88899999999999 88889999988776 6788899999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
|++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+-++-.
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999988765
No 20
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.88 E-value=5e-23 Score=216.31 Aligned_cols=192 Identities=20% Similarity=0.252 Sum_probs=157.7
Q ss_pred CCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--CCCHHHH
Q 004984 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--GVTPNLL 255 (721)
Q Consensus 178 ~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~--~i~~~~v 255 (721)
+...+||+|+|++++|+|||+|||++|.|||+|++|||.|+.+..|.+.+ ...++|+.+|+|||||+++ .+..+.+
T Consensus 41 ~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~l 118 (620)
T KOG4350|consen 41 SEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDIL 118 (620)
T ss_pred cCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHHH
Confidence 56689999999999999999999999999999999999999999999995 7799999999999999987 2346789
Q ss_pred HHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChHHHHHHhccccccc
Q 004984 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQH 335 (721)
Q Consensus 256 ~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~~ 335 (721)
++.|.+|++|++..|..+-+++|...+. .+|+..+++.|..|+.++|...|++|+.+|-.+.|.++.+..+. .+.+.+
T Consensus 119 ld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LS-k~sL~e 196 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLS-KDSLKE 196 (620)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhh-HHHHHH
Confidence 9999999999999999999999999996 69999999999999999999999999988877766555444332 222221
Q ss_pred hh---hhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhh
Q 004984 336 RS---IMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAE 377 (721)
Q Consensus 336 r~---~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~ 377 (721)
.+ ....+|--.|.++.+|-+++....+ ..++ .++++|.
T Consensus 197 ~l~RDsFfApE~~IFlAv~~W~~~Nske~~---k~~~-~~VRLPL 237 (620)
T KOG4350|consen 197 LLARDSFFAPELKIFLAVRSWHQNNSKEAS---KVLL-ELVRLPL 237 (620)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCchhhH---HHHH-HHHhhhh
Confidence 11 1255677789999999998864322 2333 3466654
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=7.5e-21 Score=212.41 Aligned_cols=263 Identities=14% Similarity=0.144 Sum_probs=221.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~-~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~--- 458 (721)
..-++|..|+++++|++|.+.|+.+=++.|-. .+-.... ++..+.+..-. ..-...|.-+|+.+..|...|++
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls-~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS-YLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-HHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 34678888999999999999998875553311 1111122 23333333222 22245777889999999888865
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
.+.+.|+..|.|||.+||++++||.-+|-=+.....++.|...|++||..+|. ..+|+-.|.+|.++|+++.|.-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999996 8899999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
+|++++|.+ .....-.|...+...+.++| |..|++|+-+||.++...|.+|.+|.-
T Consensus 514 kA~~INP~n------svi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 514 KAVEINPSN------SVILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred hhhcCCccc------hhHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 999999998 33445556666666777777 899999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+++++||+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|.=|..++|.=+
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999644
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=3.5e-20 Score=198.33 Aligned_cols=184 Identities=16% Similarity=0.080 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+.+|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|+ ...+.++|.++...|++++|+.+|+++++
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566666777777777777777777777777777777777777777775 55566677777777777777777777777
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
++|++.. +. .. ..+.....++++| +..+.+++...+. ..|. .+.+...+|+.
T Consensus 161 ~~P~~~~---~~-~~---~~l~~~~~~~~~A------------------~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 161 DDPNDPY---RA-LW---LYLAESKLDPKQA------------------KENLKQRYEKLDK--EQWG-WNIVEFYLGKI 212 (296)
T ss_pred hCCCCHH---HH-HH---HHHHHccCCHHHH------------------HHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence 7777631 00 00 0011111222333 4555554443222 2222 35555566665
Q ss_pred HHH--H----HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHH
Q 004984 621 EAA--M----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SFEA 673 (721)
Q Consensus 621 eeA--l----~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-~~~a 673 (721)
.++ + ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|..
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 332 2 223334477777888888888888888888888888888888885 7663
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=1.9e-20 Score=200.37 Aligned_cols=235 Identities=13% Similarity=0.026 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHhc---c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHH
Q 004984 397 KEYDEAEHLFEAAVNA---G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE 466 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~---~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~ 466 (721)
++.+.++..+.++|.. + ...+++.+|.++...|++++|+..|+++++.+|+++.+|.++|.+ ++.++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678888899998863 2 245688899999999999999999999999999999999999863 77799999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL-SPDY 545 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L-~P~~ 545 (721)
.|++|++++|++..+|.++|.++...|++++|+.+|+++++++|+.........+....+++++|+..|++++.. +|+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 999999999999999999999999999999999999999999997432222223456788999999999877654 4443
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (721)
. +...+... ..+++.++.+.. +...++++++++|..+++|+++|.++.++|++++|+.
T Consensus 200 ~---~~~~~~~~-------lg~~~~~~~~~~------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 200 W---GWNIVEFY-------LGKISEETLMER------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred c---HHHHHHHH-------ccCCCHHHHHHH------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 11111111 122222210000 1223456678889999999999999999999999999
Q ss_pred HHHHHHHhCC-CChhHHHHHHHHHHhcCC
Q 004984 626 SLQLARQHAA-SDHERLVYEGWILYDTSH 653 (721)
Q Consensus 626 ~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~ 653 (721)
.|++|++++| ++.+..+-+..+....++
T Consensus 258 ~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 258 LFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 9999999996 888877766665554444
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4.2e-19 Score=195.21 Aligned_cols=279 Identities=17% Similarity=0.108 Sum_probs=227.3
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc------hhhHhhHHHHHHHhCCHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH------IYSIAGLARLGYIKGHKLWA 434 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~------~~A~~~lg~~~~~~G~~~~A 434 (721)
..+.+...++++++..++ ...++..+|.++...|++++|+..++++++.++ ..++..+|.++...|++++|
T Consensus 50 ~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred ChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 445677888887776553 345778899999999999999999999988632 24577889999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 435 YEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 435 ~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~-----~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
...|.++++..|....++..++. .++.++|++.|+++++.+|+.. ..|.++|.++.+.|++++|+..|+++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999988877666666543 2555999999999999999864 36788999999999999999999999
Q ss_pred HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984 506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (721)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (721)
++.+|+ ...+..+|.++...|++++|+..|+++++.+|++.. .+...+..+.....++++|
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~A------------- 268 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS-----EVLPKLMECYQALGDEAEG------------- 268 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH-----HHHHHHHHHHHHcCCHHHH-------------
Confidence 999997 677788999999999999999999999999998631 1222222233333444444
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh--cCCHHHHHHHHH
Q 004984 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAE 662 (721)
Q Consensus 585 dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~--~G~~deAl~~ye 662 (721)
+..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+.. .|+.++|+..++
T Consensus 269 -----~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 269 -----LEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred -----HHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 78999999999987655 8999999999999999999999999999998766555554432 569999999888
Q ss_pred HHHh
Q 004984 663 ESIQ 666 (721)
Q Consensus 663 ~Ai~ 666 (721)
+.++
T Consensus 343 ~~~~ 346 (389)
T PRK11788 343 DLVG 346 (389)
T ss_pred HHHH
Confidence 7774
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=1.6e-20 Score=195.17 Aligned_cols=214 Identities=19% Similarity=0.215 Sum_probs=185.1
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHh
Q 004984 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLA 524 (721)
Q Consensus 446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~ 524 (721)
-.+|..+..+|++ .+|+..|..||++||++..+++.||.+|..+|+-..|+.++.++|+++|++..+ .-||.++++
T Consensus 42 lElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3477888888877 999999999999999999999999999999999999999999999999997655 459999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK 603 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~ 603 (721)
+|.+++|..||+++|.-+|++-. ...+...+..++++....+++. .|..-+|.. ++..+++.|++.||+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~~~~e~~~l~~ql~-------s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL---VLEAQSKLALIQEHWVLVQQLK-------SASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch---hHHHHHHHHhHHHHHHHHHHHH-------HHhcCCchhhHHHHHHHHHhcCcch
Confidence 99999999999999999998621 1223333344444444444442 223335555 778999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.++..|+.++..-|.+..|+.+.+.|-++..|+++.+|..+.++|..|+.+.++..-++-++++|+--
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999977
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=5.3e-19 Score=212.09 Aligned_cols=311 Identities=10% Similarity=-0.035 Sum_probs=212.1
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+...+++++...++. .. ++.+|.++...|++++|+..|++|+++.| ..++..+|.++...|+.+.|++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5667778888877765544 23 77889999999999999999999999854 446677888888888888888777
Q ss_pred HHHHhcCCCc-------HHHHHHHhhc-------CCh---hHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCC
Q 004984 439 NSVISSVTPL-------GWMYQERSLY-------CEG---DKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQN 494 (721)
Q Consensus 439 ~~aI~~~~~~-------~~ay~~rg~~-------~~~---~eAl~d~~kAieLdP~~~~-------ay~~rg~~l~~lg~ 494 (721)
+++.. .|+. +.+...+..+ ++. ++|++.|+++++..|.++. ++..+..++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 76655 4432 1111111000 111 5677777777765433332 22333344566777
Q ss_pred HHHHHHHHHHHHhcCCC-HHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh----hhhh-HHHHHHHHHHHHhhhh
Q 004984 495 VEAALAEINRILGFKLA-LEC-LELRFCFFLALEDYQAALCDVQAILTLSPDYRM----FEGR-VAASQLHMLVREHIDN 567 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~-~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~----~~~~-~~a~~~~~~l~~~~~~ 567 (721)
+++|+..|+++++..|. |.. ....+.++..+|++++|+..|+++++.+|.+.. .... ..+....+....+.+.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 78888888887776542 322 222466777778888888888877777776511 0000 0011111111111111
Q ss_pred hhH-----------------------HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984 568 WTI-----------------------ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 568 ~~~-----------------------A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
.+. .+.+..+...+...++.. |+..++++++..|.++.+++++|.++...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 111 111122222333334545 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 004984 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL 676 (721)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~ 676 (721)
+..+++|++++|++.++++.+|.++..+|++++|.+.++++++..|+.. +..+
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 4443
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.2e-18 Score=208.97 Aligned_cols=309 Identities=11% Similarity=-0.003 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
..++..+|..+...|++++|+..|+++|+..| ..++.++|.++...|++++|+..+.++++.+|+++. +..+|.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 45678899999999999999999999999854 556788999999999999999999999999999988 877764
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-------------------------------------
Q 004984 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL------------------------------------- 499 (721)
Q Consensus 458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl------------------------------------- 499 (721)
.++.++|+..|++|++++|+++.++..+|.++...|+.++|+
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 366799999999999999999999999999998777766544
Q ss_pred ---------HHHHHHHhc---CCCH--HHH---HHHHHHHHhcCCHHHHHHHHHHHHhhC---CCchhhhhhHHHHHHHH
Q 004984 500 ---------AEINRILGF---KLAL--ECL---ELRFCFFLALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHM 559 (721)
Q Consensus 500 ---------~~~~kAL~l---~P~~--~~~---~~R~~~~~~lgd~eeAl~d~~kal~L~---P~~~~~~~~~~a~~~~~ 559 (721)
+.++++++. +|+. ... ..+..++...|++++|+..|+++++.+ |++.... .+
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--------la 279 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--------VA 279 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--------HH
Confidence 444455543 2321 111 112334578899999999999999986 4442211 11
Q ss_pred HHHHhhhhhhHHHH-------------------HHhhhhccccccccc-hHHHHHHHHHhCCCC---------------h
Q 004984 560 LVREHIDNWTIADC-------------------WLQLYDRWSSVDDIG-SLSVIYQMLESDAPK---------------G 604 (721)
Q Consensus 560 ~l~~~~~~~~~A~~-------------------~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~---------------~ 604 (721)
.+.....++++|.. +..++......++++ |+..++++++.+|.. .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 12222233333322 222332333335555 778999999998832 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
.++..+|.++...|++++|++.++++++..|++++++..+|.++...|++++|++.+++|++++|+.. .++.+|++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999976 88888887665
Q ss_pred cCCCCCchhhHHHHHHHhhcC
Q 004984 684 SSQDSSCSSTVVSLLEDALKC 704 (721)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~ 704 (721)
.. --.....+++++++-
T Consensus 440 ~~----~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQ----EWRQMDVLTDDVVAR 456 (765)
T ss_pred hC----CHHHHHHHHHHHHHh
Confidence 54 244455555555543
No 28
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=4e-19 Score=191.58 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 004984 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILG 507 (721)
Q Consensus 429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~kAL~ 507 (721)
+++.+|...+..++... ++.++|+..+++||+++|++..+|.+||.++..+| ++++|+..++++|+
T Consensus 34 ~~~~~a~~~~ra~l~~~-------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 34 PEFREAMDYFRAVYASD-------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 45566666666555443 34488888889999999999999999999999998 57899999999999
Q ss_pred cCCC-HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984 508 FKLA-LECLELRFCFFLALEDY--QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (721)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~--eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (721)
.+|+ ...|+.|++++..+|+. ++++..+++++++||+|.. +...++-+......|+++
T Consensus 101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~ee------------- 161 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDE------------- 161 (320)
T ss_pred HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHH-------------
Confidence 9996 78888899888888874 7788888899999998843 444444444444556655
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCC
Q 004984 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSH 653 (721)
Q Consensus 585 dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~ 653 (721)
+..++++|+.||++..+|++||.++..+ |.. ++++....+++.++|+|..+++++|+++.. +++
T Consensus 162 -----L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 162 -----LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred -----HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 8889999999999999999999998887 333 478888889999999999999999999988 567
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
..+|+...++++..+|+.. |--..+-.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7889999999999887655 43333444444
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-18 Score=190.92 Aligned_cols=294 Identities=13% Similarity=0.076 Sum_probs=181.9
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~ 461 (721)
..|+..+..|+|+.|+.+|..||.+.|... |.++..+|..+|++.+|+.+-.+.++++|.++..|...|. .|++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 467888888999999999999999865543 4567778899999999999999999999999999988874 4677
Q ss_pred hHHHHHHHHHHhcCCCChHHHH----------------------------------------------------------
Q 004984 462 DKRWEDLDKATALDPTLSYPYM---------------------------------------------------------- 483 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~---------------------------------------------------------- 483 (721)
++|+..|.+.++.+|++...+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999999999998754444
Q ss_pred --------------------------------------------------------------HHHHHHHhcCCHHHHHHH
Q 004984 484 --------------------------------------------------------------YRASSLMTKQNVEAALAE 501 (721)
Q Consensus 484 --------------------------------------------------------------~rg~~l~~lg~~~eAl~~ 501 (721)
.+|++.....++..|+..
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 445555555556666666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-------hhhhHH-HHHHHHHHHHhhhhhhHHHH
Q 004984 502 INRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-------FEGRVA-ASQLHMLVREHIDNWTIADC 573 (721)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-------~~~~~~-a~~~~~~l~~~~~~~~~A~~ 573 (721)
|.++|+++-+...+.+++.+|.++|.+++.+.++.++++..-.... ..+|++ +....+.....+..+.++..
T Consensus 247 y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 247 YAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 7777766622444555666666666666666666666554332211 111111 22222222223333332211
Q ss_pred HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
--..-+.+++....+ ++...++...++|..+.--..+|+..++.|++.+|+..|.+|+..+|+|+-.|-||+.|+..+|
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG 406 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 111111122222222 2333444444555555556666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCHH-HHHHHHHHh
Q 004984 653 HCEEGLRKAEESIQMKRSFE-AFFLKAYAL 681 (721)
Q Consensus 653 ~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~ 681 (721)
++.+|+++.+++|+++|+|. +|+-||-+|
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 66666666666666666666 666666554
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=2e-18 Score=200.05 Aligned_cols=222 Identities=11% Similarity=-0.083 Sum_probs=178.7
Q ss_pred hhHHHHHHH---hCCHHHHHHHHHHHHhcCCCcHHHHHHHhh-------cC------ChhHHHHHHHHHHhcCCCChHHH
Q 004984 419 AGLARLGYI---KGHKLWAYEKLNSVISSVTPLGWMYQERSL-------YC------EGDKRWEDLDKATALDPTLSYPY 482 (721)
Q Consensus 419 ~~lg~~~~~---~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~-------~~------~~~eAl~d~~kAieLdP~~~~ay 482 (721)
+..|+.+.. .++.++|+..|.+|++++|+++.+|...+. .+ +.++|+..+++|++++|+++.+|
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~ 341 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL 341 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH
Confidence 344553433 345679999999999999999888766653 11 24899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l 561 (721)
..+|.++..+|++++|+..|++|++++|+ +..++.+|.++..+|++++|+..|+++++++|++..+. .....+
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~------~~~~~~ 415 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG------ITKLWI 415 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH------HHHHHH
Confidence 99999999999999999999999999997 77888899999999999999999999999999984321 111111
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
.....++++| +..++++++.. |+++.++.++|.++..+|++++|.+.+++++...|++..+
T Consensus 416 ~~~~g~~eeA------------------~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 416 TYYHTGIDDA------------------IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HHhccCHHHH------------------HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 2222334444 77889999875 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 641 LVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
...++.++..+|+ +|.+.+++.++
T Consensus 478 ~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 478 VNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHhccHH--HHHHHHHHHHH
Confidence 9999998888884 55555555444
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.3e-19 Score=195.79 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=184.7
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASS 488 (721)
Q Consensus 413 ~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~ 488 (721)
+.+.+|--+|+++..+++++.|++.|.+||.++|+++.+|--+|. ...+|.|...|++||..||.+..||+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 456688899999999999999999999999999999999998874 2345999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (721)
Q Consensus 489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (721)
|+.+++++.|.-.|+||+++||. .......|.++.++|+.++|++-|++|+.+||.+. .....++.+.-...+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLGR 572 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhcc
Confidence 99999999999999999999996 56667789999999999999999999999999994 355555556666666
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
+++| +..+++.-++-|..+..++..|.++-++|...-|+--|--|++++|.-+++.
T Consensus 573 ~~ea------------------l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 573 YVEA------------------LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred hHHH------------------HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence 6666 8899999999999999999999999999999999999999999999977643
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=5e-18 Score=196.67 Aligned_cols=254 Identities=11% Similarity=-0.049 Sum_probs=155.4
Q ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHhccchh--hHhhHHHHHHHh---------CCHHHHHHHHHHHHhcCCCcHHH
Q 004984 386 FHQLGCVRLL---RKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIK---------GHKLWAYEKLNSVISSVTPLGWM 451 (721)
Q Consensus 386 ~~~lG~~~~~---~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~---------G~~~~A~~~~~~aI~~~~~~~~a 451 (721)
++.+|..... .+.+++|+..|++|++++|.+ ++.++|.++..+ |++++|...+.+|++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 3455544332 245677777777777775433 455566555433 23667777777777777777777
Q ss_pred HHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984 452 YQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (721)
Q Consensus 452 y~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (721)
|..+|. .++.++|+..|++|++++|+++.+|+++|.++...|++++|+..+++|++++|. +..++.++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 766654 245577777777777777777777777777777777777777777777777775 344445555566677
Q ss_pred CHHHHHHHHHHHHhhC-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984 527 DYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (721)
Q Consensus 527 d~eeAl~d~~kal~L~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~ 605 (721)
++++|+..++++++.+ |++. .+...++.+.....+.++| ...+.+.+...|.+..
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~------~~~~~la~~l~~~G~~~eA------------------~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNP------ILLSMQVMFLSLKGKHELA------------------RKLTKEISTQEITGLI 476 (553)
T ss_pred CHHHHHHHHHHHHHhccccCH------HHHHHHHHHHHhCCCHHHH------------------HHHHHHhhhccchhHH
Confidence 7777777777777664 4542 2344444444445555555 5556777777777777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
++...+..+..+|. +|.+.+++.++..-....-......++--.|+-+.+... +++++
T Consensus 477 ~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 77777777776663 455555554443322222222244455555666655544 55444
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=4.1e-17 Score=170.11 Aligned_cols=277 Identities=11% Similarity=0.086 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
.+++|.+|.+|+..|+-.-|+.++.+.|++.| .-|-..+|.++.++|.+++|..+|+..|.-.|+.+.....+.+
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~ 151 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL 151 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 46778888888888888888888888888854 3355667888888888888888888888888865443322211
Q ss_pred ----------------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 004984 458 ----------------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (721)
Q Consensus 458 ----------------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (721)
-|+...|++..++.|++.|=++..|..|+.+|...|....||.+.+.|-++..+ .+.++.-..
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 145578888888888888888889999999999999999999999999888775 677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984 521 FFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (721)
Q Consensus 521 ~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l 599 (721)
++...||.+.++...+..+++||++.- |-...........+..+.+-.++-+ |+ ..++-.+..+..
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~t------------~cle~ge~vlk~ 298 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-WT------------ECLEAGEKVLKN 298 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HH------------HHHHHHHHHHhc
Confidence 888999999999999999999998732 1111222222222222222111110 11 126678888999
Q ss_pred CCCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 600 DAPKGVLYFR----QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 600 ~P~~~~~~~~----~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|.-+...+| .-.|...-+.+.||++-...+++.+|+|++++--++.++.-.-.||.|+..|++|.+.++|..
T Consensus 299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 9986665544 334555578899999999999999999999999999999999999999999999999999875
No 34
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=3e-17 Score=177.09 Aligned_cols=222 Identities=12% Similarity=-0.012 Sum_probs=168.0
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----C-ChhHHHHHHHHH
Q 004984 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C-EGDKRWEDLDKA 471 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~-~~~eAl~d~~kA 471 (721)
++|.+|..+|++++. ..++..+|+..++++|+++|++..+|..||.+ + ..++++..++++
T Consensus 34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 356666666555433 34566777777778888888777777777642 2 347889999999
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNV--EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~--~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~ 548 (721)
++.+|++..+|.+||.++..+|+. +++++.++++|+++|. ..+|..|++++..+|++++|+..++++|++||+|..
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s- 177 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS- 177 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-
Confidence 999999999999999999888874 7788899999999995 788889999999999999999999999999998833
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAM 624 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl 624 (721)
+.+.++.+.........- .. ..-+.+..+.++|.++|.+..+|++++-++.. +++..+|+
T Consensus 178 -----AW~~R~~vl~~~~~l~~~----------~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 178 -----AWNQRYFVITRSPLLGGL----------EA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred -----HHHHHHHHHHhccccccc----------cc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 222222221111000000 00 00013678889999999999999999999998 56678899
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984 625 RSLQLARQHAASDHERLVYEGWILYD 650 (721)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~ 650 (721)
+.+.+++..+|+++.|+-.+.-++..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=3.2e-18 Score=181.07 Aligned_cols=255 Identities=16% Similarity=0.111 Sum_probs=106.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---CC
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CE 460 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~----~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---~~ 460 (721)
.++.++...|++++|.+.+.+++.. +....+..+|.+...+|+++.|+..|.+.+...+.....+.+...+ ++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5688899999999999999765433 2344566788889999999999999999999988877666666544 45
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P-~~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
.++|+..+.++.+-++ ++..+.....++...|+++++...++++.+.. | ++..+..+|.++.+.|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5999998888888665 46777888889999999999999999988765 3 466778899999999999999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (721)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (721)
|++++|++.. +.....-+.-..++.+++ ...+.+.....|.++.+|...|.++..+
T Consensus 172 al~~~P~~~~------~~~~l~~~li~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 172 ALELDPDDPD------ARNALAWLLIDMGDYDEA------------------REALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHH-TT-HH------HHHHHHHHHCTTCHHHHH------------------HHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHcCCCCHH------HHHHHHHHHHHCCChHHH------------------HHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 9999999843 222222122222233332 4466666777799999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
|++++|+..++++++.+|+|+..+.+.|.+|...|+.++|++.+++++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999764
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7e-16 Score=178.10 Aligned_cols=307 Identities=15% Similarity=0.099 Sum_probs=238.6
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
.+.+..|-+++.......-..+..+|++|.++..+|+|++|..+|.+|++.+ +..+++|+|-+|..+|++..|..+|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 4456677788776665555567789999999999999999999999999983 3668899999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhcC--------ChhHHHHHHHHHHhcCCCChHHH----------------------------
Q 004984 439 NSVISSVTPLGWMYQERSLYC--------EGDKRWEDLDKATALDPTLSYPY---------------------------- 482 (721)
Q Consensus 439 ~~aI~~~~~~~~ay~~rg~~~--------~~~eAl~d~~kAieLdP~~~~ay---------------------------- 482 (721)
.+....+|++-....-.|.+. ..++|.....++++..|.++.+|
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999999998555444444321 22677777777777777775444
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHhc-CC--CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 483 ----------MYRASSLMTKQNVEAALAEINRILGF-KL--ALE--------CLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 483 ----------~~rg~~l~~lg~~~eAl~~~~kAL~l-~P--~~~--------~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+|.|..++.+|++.+|...|.+|++. .| +.+ .-||++.++..+++++.|...|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 56677778888999999999999886 22 222 3588999999999999999999999999
Q ss_pred CCCchhhhhhHH----------------------------HHHHHHHHHHhhhhhhHHH-----------------HHHh
Q 004984 542 SPDYRMFEGRVA----------------------------ASQLHMLVREHIDNWTIAD-----------------CWLQ 576 (721)
Q Consensus 542 ~P~~~~~~~~~~----------------------------a~~~~~~l~~~~~~~~~A~-----------------~~~~ 576 (721)
.|+|+..+.|.+ +..+.|.+-.....|-.|. ..++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999988765553 3344443333333332221 1222
Q ss_pred hhh-------cccccc-----ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984 577 LYD-------RWSSVD-----DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (721)
Q Consensus 577 l~~-------~~~~~d-----d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (721)
++. .|++.+ -+. |++.|.++|..+|.|..+=+..|.+|..-|++.+|...|.+..+--.++.+++.|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 222 222222 122 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 644 EGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 644 ~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
+|.|+..+|+|-.|++.|+..++.-
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998863
No 37
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.77 E-value=2.7e-18 Score=185.47 Aligned_cols=177 Identities=20% Similarity=0.300 Sum_probs=153.8
Q ss_pred cccCCCCCccEEEEEcC-----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC
Q 004984 174 SMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN 248 (721)
Q Consensus 174 ~~~~~~~~~DV~l~v~~-----~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~ 248 (721)
.+.+++..+||.|+||+ ..|||||.|||..|..|.+||+|++.|+...+|.++| +.|.+|..+|+|+|++.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYsdev~ 184 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYSDEVK 184 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhcchhh
Confidence 46678889999999974 5899999999999999999999999999889999996 9999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChH------
Q 004984 249 GVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDE------ 322 (721)
Q Consensus 249 ~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~------ 322 (721)
+..+++..+|.+|++|.++.|.+.|.+||...+.+...++.+-+-|..++-++|+..|++++..++.+.|..|
T Consensus 185 -~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 185 -LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred -hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 9999999999999999999999999999999998656666666669999999999999999999988877544
Q ss_pred ----HHHHHhccccccchhhhcccchhhHHHHHHHhhhcCC
Q 004984 323 ----RVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (721)
Q Consensus 323 ----~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~ 359 (721)
.+.+++.++.++ +. +...++++++|+.....
T Consensus 264 ~~~dt~~evl~r~~l~-----~~-e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 264 STRDTYEEVLRRDTLE-----AR-EFRLFEAALKWAEAECQ 298 (521)
T ss_pred hHHHHHHHHHhhcccc-----hh-HHHHHHHHHhhccCcch
Confidence 445555555543 22 66789999999987654
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.1e-16 Score=170.97 Aligned_cols=271 Identities=14% Similarity=0.039 Sum_probs=226.2
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhh---HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChh
Q 004984 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYS---IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGD 462 (721)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~A---~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~ 462 (721)
+......++|.+-.+.++..++.+|... -..+| .++.+|+...=+..-.+.+..+|+.+..|+.-|.| +.+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 3344567789999999999999854332 34456 78899999888888889999999988888888764 5669
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+|...|.||+.+||++..+|...|.++.-.|..++|++.|.+|-++=|. .--....|.=|..++.++-|..-|..|..+
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999885 222345788899999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH----HhCCCC---hhHHHHHHHHH
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML----ESDAPK---GVLYFRQSLLL 614 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL----~l~P~~---~~~~~~~g~~L 614 (721)
.|+++ -..+..+-+.-.-+.|.+|. ..+..++ +..+.. ...+.|+|.++
T Consensus 410 ~P~Dp------lv~~Elgvvay~~~~y~~A~------------------~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 410 APSDP------LVLHELGVVAYTYEEYPEAL------------------KYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred CCCcc------hhhhhhhheeehHhhhHHHH------------------HHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 99994 35666666666666777774 3333343 223332 34589999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (721)
.++|++++|+..|++||.+.|.+++.|-..|.++..+|++|.|+..|.+|+.|+|+.. +==+.+.++.|+.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999997 6667778999843
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=3.6e-16 Score=156.02 Aligned_cols=186 Identities=16% Similarity=0.063 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++++.|+ ...+.+.+.++..+|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44455555555556666666666666666666666666666666666664 44455556666666666666666666665
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
..+... ........+.+.....++++| ...+++++..+|.++.++..+|.++..+|++
T Consensus 128 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 128 DPLYPQ----PARSLENAGLCALKAGDFDKA------------------EKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred cccccc----chHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 432110 011112222222222222222 5556666666666677788899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
++|+..+++++++.|++++.+...+.++...|+.++|....++...+.|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999988887766644
No 40
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.2e-17 Score=173.13 Aligned_cols=281 Identities=16% Similarity=0.088 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (721)
Q Consensus 377 ~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~ 454 (721)
....+.+.-....|......+.|.+|+..|..||+..|.. .|.+++.++.+.|+++.|.-+.++.+++.|...+.+.+
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 3333444555678999999999999999999999995544 46678999999999999999999999999987777666
Q ss_pred HhhcCCh----hHHH---HH---------HHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 004984 455 RSLYCEG----DKRW---ED---------LDKATALD------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA- 511 (721)
Q Consensus 455 rg~~~~~----~eAl---~d---------~~kAieLd------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~- 511 (721)
-++.... .+|- .+ +...-.+- |....+-.--+.+++.+|++++|+..--.++++++.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 6554111 1111 11 11111222 333344555788999999999999999999999995
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH
Q 004984 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL 590 (721)
Q Consensus 512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al 590 (721)
.+.++.||.++.-.++.+.|+..|++++.++|+.... ..+......+..-..+-+++ -.-+.+. |-
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~----------fk~G~y~~A~ 269 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDA----------FKNGNYRKAY 269 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhH----------hhccchhHHH
Confidence 8889999999999999999999999999999998432 11222222222222222222 2224455 67
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
.+|..||.+||.+. .+|.||+.+..++||..||+.+.+.|+.++|..-.|+..+|.|...++.+++|+++|++|+.
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999875 56999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 004984 667 MKRS 670 (721)
Q Consensus 667 i~~~ 670 (721)
..-+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 8766
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=6.3e-15 Score=164.75 Aligned_cols=284 Identities=12% Similarity=0.051 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-HHHHHhh-
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQERSL- 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~-ay~~rg~- 457 (721)
+.......|......|+++.|.+...++.+..+. -++...|.+...+|+++.|...+.++.+..|+... +...++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445567899999999999999999999888443 34455688999999999999999999998887642 2222222
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH---HHhcCCHH
Q 004984 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF---FLALEDYQ 529 (721)
Q Consensus 458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~-~~R~~~---~~~lgd~e 529 (721)
.++.++|+..+++.++.+|+++.++.-.|.++.++|++++|+..+.+.++.++ ++..+ ..+..+ +...++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 24559999999999999999999999999999999999999999999998754 33322 222222 24556667
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH--
Q 004984 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-- 607 (721)
Q Consensus 530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~-- 607 (721)
+++..+.++.+..|... .....+......+....++.++| ...+++++...|.+....
T Consensus 243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~A------------------~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDSA------------------QEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHHH------------------HHHHHHHHhhCCCcccchhH
Confidence 77778899999888420 00122333333334444444444 889999999999998642
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCHHHHHHHHHHhhc
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCEEGLRKAE--ESIQMKRSFEAFFLKAYALAD 683 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--ea~~~~G~~Ly~~G~~deAl~~ye--~Ai~i~~~~~a~~~~~~~~~~ 683 (721)
.-+.......++.++++..++++++..|+++ ..+..+||+++.+|++++|...+| ++++++|+.+.+..-|-++..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 3344444556888999999999999999999 889999999999999999999999 688899999987777777665
Q ss_pred cC
Q 004984 684 SS 685 (721)
Q Consensus 684 ~~ 685 (721)
.+
T Consensus 383 ~g 384 (409)
T TIGR00540 383 AG 384 (409)
T ss_pred cC
Confidence 54
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=4.5e-15 Score=148.04 Aligned_cols=199 Identities=14% Similarity=0.012 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~ 460 (721)
...++++|..+...|++++|+..|+++++.++ ..++..+|.++..+|++++|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A-------------------------- 84 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKA-------------------------- 84 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH--------------------------
Confidence 45667777777777777777777777777643 33455566666666655555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+..|+++++++|++..++.++|.++...|++++|+..|++++...+ . ...+..+|.++...|++++|+..|++
T Consensus 85 ----~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 85 ----EDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred ----HHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455566666666666777777777777777777777777776432 2 34455666777777777777777777
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (721)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (721)
+++.+|++.. +...++.+.....++++| +..+++++...|.++..+...+.++...
T Consensus 161 ~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 161 ALQIDPQRPE------SLLELAELYYLRGQYKDA------------------RAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHhCcCChH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777776522 222333333334444444 5566777777777777777788888888
Q ss_pred CChHHHHHHHHHHHHhCC
Q 004984 618 NCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 618 g~~eeAl~~~~~Al~l~P 635 (721)
|+.++|.+..+.+.+..|
T Consensus 217 ~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 217 GDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred hhHHHHHHHHHHHHhhCc
Confidence 999988888887776654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.1e-15 Score=161.49 Aligned_cols=250 Identities=15% Similarity=0.086 Sum_probs=194.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHHHHh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQERS 456 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------~~~ay~~rg 456 (721)
.-++.++....+.++|++.+++-+..+ ..+.....|.+.+.+.|+++|+..|+...+.+|- ..++++-+.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 456667777778888888888877774 4445566788899999999999999988887773 223333332
Q ss_pred hcCChhHHHHHH-HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 457 LYCEGDKRWEDL-DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 457 ~~~~~~eAl~d~-~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
. ..++..+ ..+..+|.--++.-.-.|+-|...++++.|+..|+||+++||. ..+|.+-|-=|.++++-..|+..
T Consensus 311 ~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 D----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred h----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 1 1233322 3466667766777777888888888888888888888888887 56677777778888888888888
Q ss_pred HHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984 535 VQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (721)
Q Consensus 535 ~~kal~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (721)
|++|++++|.+ .+++|-+.++...+ =.. ||-.|.+|+++-|+++..|.-+|.
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~--------------------------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMK--------------------------MHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhc--------------------------chHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 88888888865 44554444433322 112 467889999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
++.++|+.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||.+.|++=+.
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998
No 44
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=3.1e-17 Score=148.75 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=91.6
Q ss_pred CCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCC-CCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC-HH
Q 004984 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (721)
Q Consensus 177 ~~~~~~DV~l~v~-~~~~~aHr~vLAa~S~yF~amF~~~-~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~-~~ 253 (721)
+++.+||++|.++ +++|+|||.||+++|+||+.||.++ +.++...+|.+++ +++++|..+++|+|+|.+. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCccc-CCHHH
Confidence 4567899999999 8999999999999999999999998 6777777888884 9999999999999999998 87 99
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHHHHhh
Q 004984 254 LLLEILIFANKFCCERLKDACDRKLASL 281 (721)
Q Consensus 254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~~ 281 (721)
++.+++.+|++|+++.|++.|.++|.+.
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999764
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.8e-15 Score=168.78 Aligned_cols=312 Identities=13% Similarity=0.046 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~ 458 (721)
+..++...+++.+.+|+|..|+.+|.+||.++ .++.-.++|.+..++|+.+.|+..+.+|++++|....++..+|.+
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 45777888888999999999999999999985 455667888899999999999999999999999999998888754
Q ss_pred C-------ChhHHHHHHHHHHhcCCCChH-------------------------------------HHHHHHHHHHhcCC
Q 004984 459 C-------EGDKRWEDLDKATALDPTLSY-------------------------------------PYMYRASSLMTKQN 494 (721)
Q Consensus 459 ~-------~~~eAl~d~~kAieLdP~~~~-------------------------------------ay~~rg~~l~~lg~ 494 (721)
. -+..++..+.+|-..+|.+|. .++.+|-+++.+|+
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 1 227888899999999999954 45556666666666
Q ss_pred HHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-------
Q 004984 495 VEAALAEINRILGFKLALE--CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI------- 565 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~~~--~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~------- 565 (721)
|++|...|-.+++.+|+.. .++-.|..++..|++++|+.+|+++++..|++.. +...+|.+-...
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------tm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------TMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------HHHHHHhHHHhhhhhhHHH
Confidence 6666666666666666531 1233455666666666666666666666666532 222222222221
Q ss_pred ------------hhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984 566 ------------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (721)
Q Consensus 566 ------------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (721)
.....+++|+.+..-|-.-|-..++..|..|+.+ .|--++..+|.|.....+|.++.|...+.
T Consensus 397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 2245566777777777777766688888888832 34567888999999999999999999999
Q ss_pred HHHHh-----CCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHH
Q 004984 629 LARQH-----AASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSL 697 (721)
Q Consensus 629 ~Al~l-----~P~~~-----ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~ 697 (721)
+|+.. +++.+ -..||+|.++-.++++++|-..|...++..|+|. +|.-.|--.-|++-+++.|.-+-..
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 99988 33332 2489999999999999999999999999999999 7777774445888888887655444
Q ss_pred HH
Q 004984 698 LE 699 (721)
Q Consensus 698 ~~ 699 (721)
|+
T Consensus 557 l~ 558 (1018)
T KOG2002|consen 557 LN 558 (1018)
T ss_pred Hh
Confidence 43
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.2e-16 Score=167.13 Aligned_cols=243 Identities=19% Similarity=0.107 Sum_probs=112.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg 493 (721)
.+|.++++.|++++|++.+.+.+... |++...|..++.+ ++.++|+..|++.++.+|..+..+.+++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 56899999999999999997766554 5666666656543 456999999999999999999999999988 7999
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
++++|+..+.++.+..+++..+.....++...|+++++...++++.... |++ .......+.+.....++++|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999887777777666778999999999999999988755 333 23444455555555666666
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
+.+++++|+++|+++.++...+.++...|+.++|.+.++...+..|+++..+..+|+++..+
T Consensus 166 ------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 166 ------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp ------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 004984 652 SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (721)
Q Consensus 652 G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (721)
|++++|+..|+++++.+|+.. ....-|.+|.-++--
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999655 777888888766543
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=7.8e-16 Score=170.27 Aligned_cols=250 Identities=15% Similarity=0.044 Sum_probs=161.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
-|..+.+.|+.-+|.-.|+.||..+|..+.+|..+|.. ..-..|+..+.++++|||++..+.+.+|..|...|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 45556666666666666666666666666666666542 22255566666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984 497 AALAEINRILGFKLALECLELRFC----------FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (721)
Q Consensus 497 eAl~~~~kAL~l~P~~~~~~~R~~----------~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (721)
+|+..+.+=|.-+|.... ++.. -+...-.+..-.+.|-.|...+|.-
T Consensus 371 ~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~--------------------- 427 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK--------------------- 427 (579)
T ss_pred HHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---------------------
Confidence 666666666655553221 1100 0000111122222233333333321
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (721)
..+|...-|+.-..-.++|. |+.+|+.||..+|++..+|+++|-+|..-++.+||+..|++|++|.|....+.||+|
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 11222222222222223333 588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCC
Q 004984 646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP 705 (721)
Q Consensus 646 ~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (721)
.....+|.|.||+..|=.||.|++..- .-.|. |..|.++++-|.-||.|-
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~~~~---~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSR-------NHNKA---PMASENIWQTLRLALSAM 555 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhccc-------ccccC---CcchHHHHHHHHHHHHHc
Confidence 999999999999999999999998621 11221 233778888888777763
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.3e-14 Score=166.89 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~--- 458 (721)
......++..+.+|++++|+..+..+|+++ +..||+.+|.+|.++|+..+++...-.|.-++|.+...|...+.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 344456667778899999999999999995 455789999999999999999999988999999887777766543
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HH--HH--HHHHHhcCCHHHH
Q 004984 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LE--LR--FCFFLALEDYQAA 531 (721)
Q Consensus 459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~--~~--~R--~~~~~~lgd~eeA 531 (721)
+-.+.|.-+|+|||.++|.+...+.+|+.+|.++|++..|+..|.+++.+.|..+. .. .+ +-.+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34499999999999999999999999999999999999999999999999994221 11 12 2346666666777
Q ss_pred HHHHHHHHhhCC------C--------------------------------chhh----------------------hhh
Q 004984 532 LCDVQAILTLSP------D--------------------------------YRMF----------------------EGR 551 (721)
Q Consensus 532 l~d~~kal~L~P------~--------------------------------~~~~----------------------~~~ 551 (721)
+..++.++...- + ...+ ..+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 777776666111 1 0000 000
Q ss_pred H----------HHHHHHHHHHHhhhhh-----hHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 004984 552 V----------AASQLHMLVREHIDNW-----TIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-GVLYFRQSLLL 614 (721)
Q Consensus 552 ~----------~a~~~~~~l~~~~~~~-----~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~-~~~~~~~g~~L 614 (721)
+ ....+.+.+.+.+... +..+.++++.+.+.+.+.+. |+..+.+.+...++. +..|.++|.++
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 0 0122222222222222 24455566666666677777 788888888887754 56899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
..+|.+++|+..|.+++.++|++.++...++.+++.+|+.|+|+...++-+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998866
No 49
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.68 E-value=8.5e-17 Score=155.99 Aligned_cols=171 Identities=16% Similarity=0.289 Sum_probs=136.5
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC
Q 004984 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~ 251 (721)
+.+.+.|+|++|.++ ++.|+|||.|||++|++++ |.++-.|.. .+..+. ++++++|...++||||+.++ +.
T Consensus 60 L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk 133 (280)
T KOG4591|consen 60 LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FK 133 (280)
T ss_pred HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cc
Confidence 347888999999998 5789999999999999886 444433332 344455 59999999999999999998 76
Q ss_pred HH--HHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc-------CCChH
Q 004984 252 PN--LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDE 322 (721)
Q Consensus 252 ~~--~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~~~ 322 (721)
.+ -+.+++..|++|+++.|+..|++-+.+.++ ++||+.++++|++.++.+|...|-++|..+.++ +++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHH
Confidence 54 578999999999999999999999999995 999999999999999999999999999988776 44555
Q ss_pred HHHHHhccccccch--hhhcccchhhHHHHHH
Q 004984 323 RVVEIFSHANRQHR--SIMVGLASFSLYCLLS 352 (721)
Q Consensus 323 ~v~~ll~~~~~~~r--~~~v~~~~~~~~~~l~ 352 (721)
-+-+++.+...+-. ...++.+..++.||+.
T Consensus 213 LLYklId~kTe~~LHk~iki~REDVl~LYfie 244 (280)
T KOG4591|consen 213 LLYKLIDGKTENPLHKAIKIEREDVLFLYFIE 244 (280)
T ss_pred HHHHHHcCCCcchhHHhhhccccceeeehhhh
Confidence 55555554443322 2346677777666654
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=6.1e-16 Score=160.58 Aligned_cols=243 Identities=16% Similarity=0.038 Sum_probs=212.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CCh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG 461 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~ 461 (721)
.++|.+++..|.+.+|.+.++.+|+. .+.+.+..++++|....++..|+..|...+...|.+...+.....+ +..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 37899999999999999999999998 7899999999999999999999999999999999655444443321 333
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|++.|..++.++|.+.++....|.-|.-.++.+-|+..|+|+|.+-. +++.+.|.|.++..-++++-++..|++|+.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999977 488888999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (721)
...+. -+.||.|-+++...-..+|+- |-.+++-||..||+++++++|+|.+-.+-|+
T Consensus 387 tat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 387 TATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred hccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 76543 134888888888888888877 5569999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
.++|...++.|-.++|+..|..+|+|++-...
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~~ 476 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSVHY 476 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEEeeec
Confidence 99999999999999999999998888764433
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=7.6e-16 Score=147.67 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
+.|++|++++|++ +.++|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3577788888875 556788888888888888888888888774 666777777777777777777776666666665
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (721)
+ +.+++++|.++.++|++++|+
T Consensus 91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 4 456777777888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 625 RSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
..|++|++++|++++.+.++|+++..+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888887777776554
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=1.6e-15 Score=145.47 Aligned_cols=124 Identities=14% Similarity=-0.034 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984 500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (721)
Q Consensus 500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (721)
+.|++||+++|+. ++.+|.++..+|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------------------------------- 56 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------------------------------- 56 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------
Confidence 5677778777754 456777777777777777766666655555
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (721)
Q Consensus 580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~ 659 (721)
++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+.
T Consensus 57 -----------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 57 -----------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred -----------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 660 KAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 660 ~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
.|++|++++|++. ++.+||.++..
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999987 99999988753
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=1.3e-13 Score=164.85 Aligned_cols=319 Identities=13% Similarity=-0.042 Sum_probs=190.8
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH--HHHHHHhCCHHHHHHHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL--ARLGYIKGHKLWAYEKLN 439 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~l--g~~~~~~G~~~~A~~~~~ 439 (721)
...+...|+++.+..+.. .-+.+.+..++...|++++|+..+++++...+..++..+ |.++..+|++++|++.|+
T Consensus 50 ~~~Al~~L~qaL~~~P~~---~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQ---SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHHhhCccc---hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555665555544432 111125555555667777777777777755444444444 667777777777777777
Q ss_pred HHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 004984 440 SVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (721)
Q Consensus 440 ~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~ 514 (721)
++++.+|+++.++.... ..++.++|+..+++++.++|++... ..++.++...+++.+|+..|+++++.+|+ .+.
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777766665442 2355577777777777777775543 55666666666776677777777777775 443
Q ss_pred HHHHHHHHHhcC------------------------------------------------CHHHHHHHHHHHHhh---CC
Q 004984 515 LELRFCFFLALE------------------------------------------------DYQAALCDVQAILTL---SP 543 (721)
Q Consensus 515 ~~~R~~~~~~lg------------------------------------------------d~eeAl~d~~kal~L---~P 543 (721)
+..+..++...| -.+.|++.+++.+.. +|
T Consensus 206 ~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p 285 (822)
T PRK14574 206 LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP 285 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence 332221111111 123356666666652 23
Q ss_pred Cchhhh-----hhHHHHHH----------------------------HHHHHHhhhhhhHHHHHHh--------------
Q 004984 544 DYRMFE-----GRVAASQL----------------------------HMLVREHIDNWTIADCWLQ-------------- 576 (721)
Q Consensus 544 ~~~~~~-----~~~~a~~~----------------------------~~~l~~~~~~~~~A~~~~~-------------- 576 (721)
.....+ -|..+... .+......++.++|....+
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 211111 11111111 1111112223333322111
Q ss_pred -------hhhccccccccc-hHHHHHHHHHhCCC---------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 577 -------LYDRWSSVDDIG-SLSVIYQMLESDAP---------------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 577 -------l~~~~~~~dd~~-al~~~~qaL~l~P~---------------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
||-...+.++++ |...++++....|. -.++...++.++...|+..+|++.++..+..
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122222224444 55566666665552 2245566788888889999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (721)
Q Consensus 634 ~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (721)
.|.|++....+|-++-..|+..+|.+.++++..+.|... +.+.+|++..|-
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988888888877 888888876654
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.3e-13 Score=151.66 Aligned_cols=271 Identities=12% Similarity=0.043 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH--------
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWM-------- 451 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~-~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~a-------- 451 (721)
++...+..|.....-|+|++|++...++-+.. ++..++ ..+.+..++|+++.|...+.++.+..|+...+
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 34556788999999999999998888876652 222233 34666699999999999999999998886433
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-HHHHHH---HhcC
Q 004984 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE-LRFCFF---LALE 526 (721)
Q Consensus 452 y~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~-~R~~~~---~~lg 526 (721)
+... ++.++|+..++++++.+|+++.++.-++.+|+..|++++|+..+.+..+..+. ++... .++.++ ....
T Consensus 163 ~l~~---g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 163 QLAR---NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333 45599999999999999999999999999999999999999888888876663 32221 222111 1111
Q ss_pred CHHHHHHHHHHHHhhC----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC
Q 004984 527 DYQAALCDVQAILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (721)
Q Consensus 527 d~eeAl~d~~kal~L~----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~ 602 (721)
...+....+.++++-- |++. .+............+.++ |...+++++. .|+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~------~~~~~~A~~l~~~g~~~~------------------A~~~L~~~l~-~~~ 294 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQV------ALQVAMAEHLIECDDHDT------------------AQQIILDGLK-RQY 294 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCH------HHHHHHHHHHHHCCCHHH------------------HHHHHHHHHh-cCC
Confidence 1111222233332222 2231 111111111222222222 2445555555 344
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (721)
++.+....+.+ ..+++++|+..+++.++..|+|++.+..+|.+++..|++++|...+|++++++|+.+.|..-|-++.
T Consensus 295 ~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 295 DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD 372 (398)
T ss_pred CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44433333332 2355556666666666666666666666666666666666666666666666666655555444443
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2e-13 Score=152.75 Aligned_cols=280 Identities=10% Similarity=-0.014 Sum_probs=212.2
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEK 437 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~---A~~~lg~~~~~~G~~~~A~~~ 437 (721)
+.+.+...+.+..+..++. .+.+...|.+..++|++++|..+|.+|.+..+.. .....++++...|+++.|.+.
T Consensus 99 ~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445555565555443322 3455567889999999999999999998874332 233358899999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYM----YRASSLMTKQNVEAALAEINRILGFK 509 (721)
Q Consensus 438 ~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~----~rg~~l~~lg~~~eAl~~~~kAL~l~ 509 (721)
+++.++.+|+++.++.-.+.. ++.++|++.+.+..+..+..+..+. ..+.-+...+..+++++.+.++.+-.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 999999999988877666542 4559999999999987655444332 22233355566677778999999888
Q ss_pred C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984 510 L-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (721)
Q Consensus 510 P-----~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (721)
| ++..+...+..+...|++++|+..++++++..|++.... .... ..+.....
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~----~~~l------------------~~~~~l~~- 312 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS----LPLC------------------LPIPRLKP- 312 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch----hHHH------------------HHhhhcCC-
Confidence 8 467677788899999999999999999999999984210 0011 11111111
Q ss_pred cccc-hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984 585 DDIG-SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQ--LARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (721)
Q Consensus 585 dd~~-al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~ 659 (721)
++.. ++..++++++.+|+++ .++..+|.++.++|++++|.+.++ ++++.+|++.. +..+|.++..+|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 1212 4778999999999999 899999999999999999999999 68889998766 5599999999999999999
Q ss_pred HHHHHHhc
Q 004984 660 KAEESIQM 667 (721)
Q Consensus 660 ~ye~Ai~i 667 (721)
.|++++..
T Consensus 392 ~~~~~l~~ 399 (409)
T TIGR00540 392 MRQDSLGL 399 (409)
T ss_pred HHHHHHHH
Confidence 99998764
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=7.4e-15 Score=147.17 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=132.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (721)
+|..|.++|++ ..|..-++||++.||++..+|.-||.+|+.+|..+.|-+.|++|+.++|+ -+-++|-|+++..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 44455555444 66677789999999999999999999999999999999999999999996 677888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~ 606 (721)
++++|...|++|+. +|.| |.-++.
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t 141 (250)
T COG3063 118 RPEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDT 141 (250)
T ss_pred ChHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchh
Confidence 99999999999986 6887 223456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
|.|.|.|-.++|.+..|..+|++|++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 677777777777777777777777777777777777777777777777777777776555433
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.2e-14 Score=150.61 Aligned_cols=258 Identities=15% Similarity=0.157 Sum_probs=204.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCH-HHHH-HHHHHHHhc-CCC----cHHHHHHHhh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHK-LWAY-EKLNSVISS-VTP----LGWMYQERSL 457 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~-~~A~-~~~~~aI~~-~~~----~~~ay~~rg~ 457 (721)
.+.|.+...+.++++|+..|+...+.+|-. -+....++++.+.+. .-++ +....-|.. .|. .|+-|.-|++
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 456778888899999999999987764311 122234445544442 2221 111112222 232 5677777766
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
- ++|+..|.+|+.|||....+|.-+|-=|+++++-..||..|++||.++| |..+|+-.|.+|.-++...=|+-.|+
T Consensus 346 H---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 346 H---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred H---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
+|.++.|++. .. |..+++..+..++.. |..+|-+|+...-.++.++.++|.++.
T Consensus 423 kA~~~kPnDs------Rl-------------------w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 423 KALELKPNDS------RL-------------------WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhcCCCch------HH-------------------HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 9999999982 23 333333333334333 588999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 616 RLNCPEAAMRSLQLARQ-------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 616 ~lg~~eeAl~~~~~Al~-------l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
++++.++|...|.+-++ ..|.--.|...++....+.+++++|-....++..-.+--|
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 99999999999999999 6677778888899999999999999988888877654444
No 58
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.63 E-value=1.1e-15 Score=131.39 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=85.9
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHHHh
Q 004984 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~aA 262 (721)
||++.++|+.|++||.+|++.|+||++||.+++.++....|.+++ +++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 789999999999999999999999999999999888888999984 9999999999999999999 9999999999999
Q ss_pred hhcChhhHHHHHH
Q 004984 263 NKFCCERLKDACD 275 (721)
Q Consensus 263 d~~~v~~L~~~C~ 275 (721)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999994
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-13 Score=144.09 Aligned_cols=294 Identities=12% Similarity=0.029 Sum_probs=233.9
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNS 440 (721)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~ 440 (721)
..+...+|..-+++. +..-.-.+|.+++..|++++|+.-|+++..++|- .++-..|.++.+.|++..--+....
T Consensus 216 ~~t~l~le~~~~lr~----NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRC----NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred hhHHHHHHhhccCCc----cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 344455555444543 2344567899999999999999999999888642 2344456678888998877666666
Q ss_pred HHhcCCC-------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984 441 VISSVTP-------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (721)
Q Consensus 441 aI~~~~~-------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~ 512 (721)
....... .+...+.+.++ ..|+..-+|+|+++|++..+|.-.|.++..+||+++|+-.|+.|+.+.|. .
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEKKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhhhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 6655432 23334445444 88999999999999999999999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~dd~~al 590 (721)
++|.-+.-+|...|++.||..--+-++..-|+++- +..+.|.. .....--++| =
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKA------------------K 424 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKA------------------K 424 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh------hhhhhcceeeccCchhHHHH------------------H
Confidence 88877777999999999999999999999998832 33333211 1111222233 4
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
..++.+|.++|+...+-+.+++++.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999999999999999999999999999855 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCC
Q 004984 671 FEAFFLKAYALADSSQDSS 689 (721)
Q Consensus 671 ~~a~~~~~~~~~~~~~~~~ 689 (721)
.++ -+||+-+...+.||.
T Consensus 504 ~~~-sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 504 SKR-TLRGLRLLEKSDDES 521 (564)
T ss_pred chH-HHHHHHHHHhccCCC
Confidence 995 378887777666654
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.2e-14 Score=158.94 Aligned_cols=225 Identities=13% Similarity=0.049 Sum_probs=182.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--c--CC
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--Y--CE 460 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--~--~~ 460 (721)
+-.|+.+++.|.+.+|.-.|+.|++. .|..||..||.++...++-..|+..+.++++++|++-.++..++- . +.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999998 478889999999999999999999999999999998777776642 2 23
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHH----HHH---HHHhcCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMY----RAS---SLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQA 530 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~----rg~---~l~~lg~~~eAl~~~~kAL~l~P---~~~~~~~R~~~~~~lgd~ee 530 (721)
..+|+..+.+=|.-.|...+--.. ++. -+..-..+..=.+.|..|...+| +++....+|.+|.-.|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 389999999999988765422211 000 00111123334455666666666 47777889999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 004984 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (721)
Q Consensus 531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~ 609 (721)
|+.+|+.||..+|++ +..|..|+-.+.+-++.. |+..|+|||++.|+.+++++|
T Consensus 449 aiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 999999999999998 445666666666666666 799999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAAS 636 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (721)
+|.....+|.++||...|=.||.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999987
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=1.1e-12 Score=142.75 Aligned_cols=270 Identities=14% Similarity=0.018 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHH----hcCCCcHHHHHHH
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVI----SSVTPLGWMYQER 455 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI----~~~~~~~~ay~~r 455 (721)
.....+..|......|++++|...++++++..|.+. +.. +..+...|++..+.....+++ ..+|....++...
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 344567789999999999999999999999866554 222 445555565555555555554 4566655555444
Q ss_pred hh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcC
Q 004984 456 SL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALE 526 (721)
Q Consensus 456 g~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lg 526 (721)
|. .|+.++|+..++++++++|+++.++..+|.++.+.|++++|+..+++++...|. + ..+..++.++..+|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 32 255599999999999999999999999999999999999999999999999873 2 23446888999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC--CCCh
Q 004984 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKG 604 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~--P~~~ 604 (721)
++++|+..|++++...|...................... ....++-|-.+.+. . .... +...
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~w~~~~~~-------------~--~~~~~~~~~~ 264 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGDRWEDLADY-------------A--AWHFPDHGLA 264 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHHHHHHHHHH-------------H--HhhcCcccch
Confidence 999999999999888873211111100001111011100 01111111111111 0 1111 2222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
.....++.++...|+.++|.+.++......-. .......++++++.+|++++|+....+|+.+-
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33346888899999999999999887664433 46778899999999999999999999998753
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-13 Score=151.15 Aligned_cols=246 Identities=17% Similarity=0.136 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------------
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------------- 446 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-------------- 446 (721)
.+...-.+|......+++..|++.|.+||+++ ....+.+.|-+|+.+|++...+....++++..-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999996 222356688899999999988888777776422
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 004984 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (721)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (721)
..|.+|..++.+ +.|+..|.+++.---+ +.++-.++..++++.+..+..-++|. .......|..+...
T Consensus 303 r~g~a~~k~~~~---~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDY---EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhH---HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 245566666555 8888888886654333 67777888888888888888888886 44445678888888
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~ 605 (721)
|||..|+..|++||..+|++.-.++.. |.||..|... ..++.+.+.+|+++|....
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNR------------------Aac~~kL~~~------~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNR------------------AACYLKLGEY------PEALKDAKKCIELDPNFIK 427 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHH------------------HHHHHHHhhH------HHHHHHHHHHHhcCchHHH
Confidence 888888888888888888884433222 2233333222 1137778888888888889
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHH
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEE 663 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-G~~deAl~~ye~ 663 (721)
+|+++|.++..+.++..|++.|+.|++++|++.++....+-+.-.+ |+..+-+ .+++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee-~~~r 485 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEE-TKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHH-HHHh
Confidence 9999999999999999999999999999999999888888887763 3333333 4454
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=2.5e-13 Score=139.62 Aligned_cols=165 Identities=10% Similarity=-0.022 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhc--------C
Q 004984 462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLAL--------E 526 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~l--------g 526 (721)
++|+..|++++.++|+++ .+++.+|.++...|++++|+..|+++++..|+ +. .++.+|.++..+ |
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 555666677777777765 57899999999999999999999999999995 33 577888888876 8
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~ 606 (721)
++++|+..|+++++.+|++.... .+..... . +... ....
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~---~a~~~~~---~-----------------------------~~~~------~~~~ 168 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAP---DAKKRMD---Y-----------------------------LRNR------LAGK 168 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHH---HHHHHHH---H-----------------------------HHHH------HHHH
Confidence 99999999999999999984211 0000000 0 0000 1123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
....|.++.+.|++++|+..++++++..|++ +++++++|+++..+|++++|.+.+++...-
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578889999999999999999999997765 589999999999999999999877665443
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=2.7e-12 Score=153.69 Aligned_cols=321 Identities=9% Similarity=-0.016 Sum_probs=221.7
Q ss_pred hhHHHHHHH--hhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHH
Q 004984 345 FSLYCLLSE--VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLA 422 (721)
Q Consensus 345 ~~~~~~l~w--V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg 422 (721)
.....++.. +..+. .+.+.+.++++++++..++. ..++..++..+...++.++|++.++++++.++...++ ++
T Consensus 100 ~~~~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~ 174 (822)
T PRK14574 100 ISSRGLASAARAYRNE-KRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MT 174 (822)
T ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HH
Confidence 334444433 44443 35668888999988766544 3344566888899999999999999999886654433 55
Q ss_pred HHHH--HhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cC-------------------------------------
Q 004984 423 RLGY--IKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC------------------------------------- 459 (721)
Q Consensus 423 ~~~~--~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~------------------------------------- 459 (721)
.++. ..++..+|++.++++++.+|++..++.++-. ++
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 5444 4677767999999999999987777665411 00
Q ss_pred -----------ChhHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHH
Q 004984 460 -----------EGDKRWEDLDKATALDPTLS-------YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRF 519 (721)
Q Consensus 460 -----------~~~eAl~d~~kAieLdP~~~-------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-~~~~R~ 519 (721)
..+.|++.+++.+...|+.+ .+.+-|=.++...|++.+++.+|+..-.-... |. .....|
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 11457888888888444433 34456777888888888888888877654322 33 223456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC------ch-----hhhhh------HHHHHHHHHHHHhhh---------------h
Q 004984 520 CFFLALEDYQAALCDVQAILTLSPD------YR-----MFEGR------VAASQLHMLVREHID---------------N 567 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~kal~L~P~------~~-----~~~~~------~~a~~~~~~l~~~~~---------------~ 567 (721)
-.|+.++..++|+..|++++.-+|. .. .|+-. ..|..++..+....- +
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 6788888888888888888775531 11 11111 112222222222100 1
Q ss_pred hhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984 568 WTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (721)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (721)
|.++.-. +.....-.++.. |...++..+...|+|+.++..+|.++...|.|.+|+..++.+..++|++..+.+.+|.
T Consensus 415 ~~~~~~l--~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTL--LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 1111100 011111124444 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 647 ILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 647 ~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+..++|++++|-...+..++..|...
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999888766
No 65
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=151.26 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=154.1
Q ss_pred cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceE--EeCCCCCCHHHHHHHhhhhccCCCCCCCHH
Q 004984 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDI--DLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (721)
Q Consensus 176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I--~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~ 253 (721)
..++.-+||++..=|++.+.||..| ..|+||.+||.|.++|+++..| +|+|++|+..+|..++.=+|.+++. |..+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 3577789999999999999999999 6799999999999999998655 5677789999999999999999999 9999
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccC--------CChHHHH
Q 004984 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC--------LNDERVV 325 (721)
Q Consensus 254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~--------L~~~~v~ 325 (721)
.|..+|.+|.++++++|.+.|.+.+...++ +.+++.+++.+..|+...+.+.|+++++.|+..- ++-+-+.
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHH
Confidence 999999999999999999999999999995 8999999999999999999999999999988763 3445556
Q ss_pred HHhccccccchhhhcccchh-hHHHHHHHhhhcCCCC
Q 004984 326 EIFSHANRQHRSIMVGLASF-SLYCLLSEVAMNLDPR 361 (721)
Q Consensus 326 ~ll~~~~~~~r~~~v~~~~~-~~~~~l~wV~~d~~~r 361 (721)
.++.|+++- |-..+| ++..+.+|+=+...+.
T Consensus 221 ~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~pd 252 (488)
T KOG4682|consen 221 QLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLVPD 252 (488)
T ss_pred HHhCCCCeE-----EEEeeehHHHHHHHHHHhhhccc
Confidence 677788773 444455 4566778987765543
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.52 E-value=1.9e-11 Score=133.02 Aligned_cols=296 Identities=14% Similarity=-0.019 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH----
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ---- 453 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~---- 453 (721)
.+++..+|..+...|+.++|...|.++.+..+ ....+..|.++...|++++|.+.+.++++.+|++..++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 67888899999999999999999999887732 234555788899999999999999999999999876654
Q ss_pred --HHhhc-CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH
Q 004984 454 --ERSLY-CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ 529 (721)
Q Consensus 454 --~rg~~-~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e 529 (721)
..|.+ +..+.+...+......+|+...++..+|.++...|++++|+..++++++++|+ +..+...+.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 22322 22244444444455788888899999999999999999999999999999997 667788999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHH
Q 004984 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYF 608 (721)
Q Consensus 530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~-~~~~~~ 608 (721)
+|+..+++++.+.|..... ........+.+.....++++| +..+++++...|. ......
T Consensus 166 eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A------------------~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 166 EGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAA------------------LAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred HHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHhccccCCChHHHH
Confidence 9999999999999864221 122333444455555555555 7788888877762 222222
Q ss_pred -HHHHHH---HHcCChHHHHHH--H-HHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 004984 609 -RQSLLL---LRLNCPEAAMRS--L-QLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--------- 670 (721)
Q Consensus 609 -~~g~~L---~~lg~~eeAl~~--~-~~Al~l~P~--~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~--------- 670 (721)
+.+..+ ...|....+.++ . .......|. ....-.+.++++...|+.++|....++.....-.
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 222222 224433333333 1 111111121 2233347899999999999999999887764322
Q ss_pred -HHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984 671 -FEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (721)
Q Consensus 671 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (721)
-..-.++|++..-.+= -...+.+|.+|+
T Consensus 306 ~~~~~~l~A~~~~~~g~----~~~A~~~L~~al 334 (355)
T cd05804 306 DVGLPLAEALYAFAEGN----YATALELLGPVR 334 (355)
T ss_pred hhhHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 3366778877776662 234555565554
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=5.8e-12 Score=145.45 Aligned_cols=256 Identities=15% Similarity=0.016 Sum_probs=194.5
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l 492 (721)
.+.+.|+..+.+|++++|.+.+..+|...|.+..+|+..|.+ |+.++++...-.|-.|+|++.+-|..+|....++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 455667778888999999999999999999888888777754 4559999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc----hhhhhhH-------------H-
Q 004984 493 QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY----RMFEGRV-------------A- 553 (721)
Q Consensus 493 g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~----~~~~~~~-------------~- 553 (721)
|++++|+-.|+|||..+|. .+..+.|..+|.++|++..|..-|.+++.++|.- .+...+. +
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999996 7777889999999999999999999999999921 1111111 0
Q ss_pred -----------------HHHHHHHHHHhhhhhhHHHHHHhhhhc----------------------cccc----------
Q 004984 554 -----------------ASQLHMLVREHIDNWTIADCWLQLYDR----------------------WSSV---------- 584 (721)
Q Consensus 554 -----------------a~~~~~~l~~~~~~~~~A~~~~~l~~~----------------------~~~~---------- 584 (721)
-......+--...+|+.|...+.-.-. .-.+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 111222222333444444332221111 0000
Q ss_pred ----------cccchHHHHHHHHHh-C---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHH
Q 004984 585 ----------DDIGSLSVIYQMLES-D---APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILY 649 (721)
Q Consensus 585 ----------dd~~al~~~~qaL~l-~---P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly 649 (721)
+.-..+.++..-+.. + -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-||.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 111111122222222 1 2457889999999999999999999999999998864 567888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH
Q 004984 650 DTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 650 ~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
.+|++++|+..|++++.++|+.-
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCch
Confidence 99999999999999999999876
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.2e-11 Score=138.00 Aligned_cols=254 Identities=11% Similarity=-0.019 Sum_probs=187.1
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhh--Hh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~-~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---- 458 (721)
+...+....++|++++|..+|.+|.+..+... .. ..+.++...|+++.|.+.++++++..|++.+++...+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33346666899999999999999999855442 22 347899999999999999999999999988777666432
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHH--------HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYM--------YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ 529 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~--------~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e 529 (721)
++.++|++-+.+.....+..+..+. .+.........-+.....+++.-.-.| ++......+..+...|+.+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 4559999888887777766544333 211111222222222222232222234 3666677788999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (721)
Q Consensus 530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~ 609 (721)
+|....+++++..|+... ....+.+ ..++.+ .++..+++.++.+|+++++++.
T Consensus 281 ~A~~~L~~~l~~~~~~~l-------~~l~~~l--~~~~~~------------------~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 281 TAQQIILDGLKRQYDERL-------VLLIPRL--KTNNPE------------------QLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHHHHHHHHhcCCCHHH-------HHHHhhc--cCCChH------------------HHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999996665411 1111100 002222 2588999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
.|.++.+.+++++|.+.++++++.+|++. .+..+|.++-.+|+.++|.+.|++++.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999976 4668999999999999999999998875
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-11 Score=140.84 Aligned_cols=314 Identities=16% Similarity=0.137 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhh--HhhHH-HHHHHhCCHHHHHHHHHHHHhcCC------------
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYS--IAGLA-RLGYIKGHKLWAYEKLNSVISSVT------------ 446 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A--~~~lg-~~~~~~G~~~~A~~~~~~aI~~~~------------ 446 (721)
.-|+.++..+...|.-..|+...+..+.+. +.+. +.-.+ .+....|...+++....++|...-
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l 437 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYL 437 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 344566666666666666666666655553 3221 11122 245567888888888889998421
Q ss_pred CcHHHHHHHhhc--------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHH
Q 004984 447 PLGWMYQERSLY--------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLE 516 (721)
Q Consensus 447 ~~~~ay~~rg~~--------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~ 516 (721)
-.|.+|..+..- -...+++..+++|++.+|+|+.+.++++.=|..+++.+.|+...++++++++. +.+|+
T Consensus 438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 144445444321 11278889999999999999999999999999999999999999999999883 78899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHH-------HHHHHHHHHHhhhhhh-------------------
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVA-------ASQLHMLVREHIDNWT------------------- 569 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~-------a~~~~~~l~~~~~~~~------------------- 569 (721)
..+.++-..+++.+|+.-.+.+++=-|+|.. -.++.. ....++.+.+.+..|+
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 9999999999999999999999998888411 011111 1111111111111121
Q ss_pred ----------------------------H-----------------------HHHHHhhhhccccccc-cchHHHHHHHH
Q 004984 570 ----------------------------I-----------------------ADCWLQLYDRWSSVDD-IGSLSVIYQML 597 (721)
Q Consensus 570 ----------------------------~-----------------------A~~~~~l~~~~~~~dd-~~al~~~~qaL 597 (721)
. -..|....+.|...+. .++..++..+=
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0 0123333333333322 22566777777
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCHH-HH
Q 004984 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR--KAEESIQMKRSFE-AF 674 (721)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~--~ye~Ai~i~~~~~-a~ 674 (721)
.++|-.+..|+.+|.++...|..+||+..|..|+.++|+++.....+|.++...|+-.-|.. ....|++++|... ||
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777776666665 6777777777776 77
Q ss_pred HHHHHH---hhccCCCCCchhhHHHH
Q 004984 675 FLKAYA---LADSSQDSSCSSTVVSL 697 (721)
Q Consensus 675 ~~~~~~---~~~~~~~~~~~~~~~~~ 697 (721)
|.-|-+ ++|+.--.+|-.+-++|
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 777754 35555555555555554
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=5.5e-12 Score=126.76 Aligned_cols=203 Identities=18% Similarity=0.065 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~ 460 (721)
..+..+||.-|++.|++..|..-+++||+.+|.+. |..+|.+|..+|+.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~---------------------------- 86 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND---------------------------- 86 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------------------------
Confidence 34556777777788888888778888877766553 444455555555544
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
.|-+.|++|+.++|++.+..+|-|.-+..+|++++|..-|++|++ +|. ++.+.|.|+|-.+.|+.+.|..+|+
T Consensus 87 --~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 87 --LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred --hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 455567888888888888899999999999999999999999997 453 5678889999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
++++++|++... ...+....-...++..| -..+++-...-+-.++..-..-.+-.+
T Consensus 164 raL~~dp~~~~~------~l~~a~~~~~~~~y~~A------------------r~~~~~~~~~~~~~A~sL~L~iriak~ 219 (250)
T COG3063 164 RALELDPQFPPA------LLELARLHYKAGDYAPA------------------RLYLERYQQRGGAQAESLLLGIRIAKR 219 (250)
T ss_pred HHHHhCcCCChH------HHHHHHHHHhcccchHH------------------HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 999999998431 11111111222233333 334444444444444443333334455
Q ss_pred cCChHHHHHHHHHHHHhCCCChhH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
+|+...|-+.-.+.-++.|...+-
T Consensus 220 ~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 220 LGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hccHHHHHHHHHHHHHhCCCcHHH
Confidence 788888888878888888877653
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=145.11 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=181.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
.|..++.+.+|..|+..|+.||...|+++..|.+|. .++++++|+-|..+.++++|.+...+...+.++..++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 455577788888888888888888888888887774 3466688888888888888888888888888887777777
Q ss_pred HHHHHHH---------------HHHhcCCC-HHH--HHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984 497 AALAEIN---------------RILGFKLA-LEC--LEL-RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (721)
Q Consensus 497 eAl~~~~---------------kAL~l~P~-~~~--~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~ 557 (721)
+|-..++ +.+.-.-. |.+ +.. -+.++.-+|++++|+..=-.++++||.+.. +...
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~------al~v 208 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE------ALYV 208 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH------HHHh
Confidence 6664433 11111111 222 222 345788889999999988889999998843 4444
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH------------HHHHHHHHHHcCChHHHHH
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL------------YFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~------------~~~~g~~L~~lg~~eeAl~ 625 (721)
++.+.--....++| ...+.|+|.++|.+..+ |-.+|+=+.+.|++..|-+
T Consensus 209 rg~~~yy~~~~~ka------------------~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 209 RGLCLYYNDNADKA------------------INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred cccccccccchHHH------------------HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 44333333333333 66889999999988765 6688999999999999999
Q ss_pred HHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 626 SLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 626 ~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
.|..||.++|++. --|.|++.+...+||.+||+..-++|++|+|++. |+..+|-+..|
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999999999865 4589999999999999999999999999999999 99999876543
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=2.7e-12 Score=151.07 Aligned_cols=159 Identities=9% Similarity=-0.055 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
.+++.-...-.+-.|+++.++.++|.+..++|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44444333444557888899999999999999999999999999999997 66677888888888888888776666666
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
.+|++ +.+++.+|.+|.++|++
T Consensus 149 ~~p~~----------------------------------------------------------~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 149 GGSSS----------------------------------------------------------AREILLEAKSWDEIGQS 170 (694)
T ss_pred cCCCC----------------------------------------------------------HHHHHHHHHHHHHhcch
Confidence 66665 56678899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 004984 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKA 678 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~~~a~~~~~ 678 (721)
++|.+.|+++++-+|+++++++++|.+|..+|+.++|...|++|++. .|..-+|.++.
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 45444665544
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=135.88 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=193.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg 493 (721)
.+|++|+.+|-+.+|.+.+.++++..|- +..+|... .+...|+..|...++--|.+.-.....|-++..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri---dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI---DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh---ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 5899999999999999999999998763 33444433 44489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (721)
++++|+..|+++++++|. .++.---+.-|.--++.|-|++.|++++.+.-.+.. ...+.++.=...+|++.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~- 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLV- 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhh-
Confidence 999999999999999995 554333445577789999999999999999888744 444445444455666666
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (721)
Q Consensus 573 ~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly 649 (721)
|.+|.||+...- ..++.|+|+|.+..-.|++--|.++++.|+-.+|+++++++|+|.+--
T Consensus 378 -----------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 378 -----------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred -----------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 889999998764 457889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH
Q 004984 650 DTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 650 ~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
..|+.++|-..+.-|-+..|.-.
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hcCchHHHHHHHHHhhhhCcccc
Confidence 99999999999999999999743
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-11 Score=137.02 Aligned_cols=216 Identities=13% Similarity=-0.002 Sum_probs=169.9
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l 492 (721)
+|+-+|.-|+..|.+.+|.+.|.|+..++|..|.+|..-|.. +..+.|+++|.+|-++-|....|+.++|.=|+.+
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 455566666666666666666666666666666666655542 3348888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hhhhhHHHHHHHHHHHHhhhhhhH
Q 004984 493 QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MFEGRVAASQLHMLVREHIDNWTI 570 (721)
Q Consensus 493 g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~-~~~~~~~a~~~~~~l~~~~~~~~~ 570 (721)
++++-|-..|..|+.+.|+ |--.+-.|.+....+.|.+|+..|+++++.-+..- .-.--.....++|.+...+..+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999999999996 66667789999999999999999999995333210 000012245555655666666666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (721)
Q Consensus 571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~ 650 (721)
| +..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|++.-+---+|.++-+
T Consensus 474 A------------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 A------------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred H------------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 6 8899999999999999999999999999999999999999999999997776667755544
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=5.4e-12 Score=127.55 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCC--HHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALED--YQAALCDVQ 536 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd--~eeAl~d~~ 536 (721)
.++++..|.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.+ +...|+ +++|+..++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 378888889999999999999999999999999999999999999988885 6766667764 355554 244444444
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
++++.+|+++.+++++|..+..
T Consensus 135 ----------------------------------------------------------~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 135 ----------------------------------------------------------KALALDANEVTALMLLASDAFM 156 (198)
T ss_pred ----------------------------------------------------------HHHHhCCCChhHHHHHHHHHHH
Confidence 4444444445677778888888
Q ss_pred cCChHHHHHHHHHHHHhCCCChhH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
+|++++|+..++++++++|.+.+.
T Consensus 157 ~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 157 QADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred cCCHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888876655
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=5.7e-12 Score=129.52 Aligned_cols=163 Identities=18% Similarity=0.097 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQ 453 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~---ay~ 453 (721)
....++.+|..+...|++++|+..|+++++..|. .++..+|.++...|++++|+..|+++++.+|+.+. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4567789999999999999999999999998543 46788999999999999999999999999997654 566
Q ss_pred HHhhc------------CChhHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 004984 454 ERSLY------------CEGDKRWEDLDKATALDPTLSYPY-----------------MYRASSLMTKQNVEAALAEINR 504 (721)
Q Consensus 454 ~rg~~------------~~~~eAl~d~~kAieLdP~~~~ay-----------------~~rg~~l~~lg~~~eAl~~~~k 504 (721)
.+|.. +..++|+..|+++++.+|++..++ ..+|.++...|++++|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 66542 234889999999999999997653 4678999999999999999999
Q ss_pred HHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 505 ILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 505 AL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
++...|+ ++.++.+|.++..+|++++|+..++.....-|+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999774 467888999999999999999988777665553
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=1.5e-11 Score=139.20 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-------cchh--hHh-hHHHHHHHhCCHHHHHHHHHHHHhc--------
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIY--SIA-GLARLGYIKGHKLWAYEKLNSVISS-------- 444 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~~~--A~~-~lg~~~~~~G~~~~A~~~~~~aI~~-------- 444 (721)
..+..+++..+..+|+|+.|+..|+.|+++ +|.. ... .+|.+|..+|++.+|+..|.+|+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455567999999999999999999999988 3322 233 4899999999999999999999975
Q ss_pred CC-------CcHHHHHHHhhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 445 VT-------PLGWMYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (721)
Q Consensus 445 ~~-------~~~~ay~~rg~~~~~~eAl~d~~kAieL--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~ 509 (721)
+| |++.+|+++|++ +||...+++|+++ .|.-+..+.+.|.++...+++++|+..+++++++-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33 455556555555 8888888888865 34556778889999999999999999999998862
Q ss_pred ---C-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 004984 510 ---L-----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (721)
Q Consensus 510 ---P-----~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (721)
| . +....+.|.+|..+|+|++|...|++|+++.-....
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--------------------------------- 402 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--------------------------------- 402 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---------------------------------
Confidence 2 1 223456788999999999999999999987533200
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCC
Q 004984 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 581 ~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~ 653 (721)
..++.......++|....+++++++|-..|.+++.+. |+-...+-|+|-+|-.+|+
T Consensus 403 -----------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 403 -----------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred -----------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 0122233445566677777777777777777777653 4455677788888888888
Q ss_pred HHHHHHHHHHHHh
Q 004984 654 CEEGLRKAEESIQ 666 (721)
Q Consensus 654 ~deAl~~ye~Ai~ 666 (721)
+|+|++..++++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887774
No 78
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=133.28 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~ 558 (721)
+-..+=|+=+++-++|++|+.-|++||+|+|. +-.|.+|+.+|.++|.++.|+.|++.||.+||.|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------- 148 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------- 148 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-------------
Confidence 34456677777777777777777777777774 5555677777777777777777777777777776
Q ss_pred HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 559 ~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
..+|-++|.++..+|++++|++.|++||+++|++.
T Consensus 149 ---------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 149 ---------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred ---------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 24566677777777777777777777777777777
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 639 ERLVYEGWILYDTSHCE---EGLRKAEESIQM-K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~d---eAl~~ye~Ai~i-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
..--+++|+-..++.-. .+....+-+-.+ . |++-.-|+ .+| .+-.-|.++.....+
T Consensus 184 ~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-------~~l--~nnp~l~~~~~~m~~ 244 (304)
T KOG0553|consen 184 SYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-------GDL--MNNPQLMQLASQMMK 244 (304)
T ss_pred HHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-------ccc--ccCHHHHHHHHHHhh
Confidence 77777777766665555 444444444444 2 56653332 122 223445666666555
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=134.62 Aligned_cols=95 Identities=23% Similarity=0.269 Sum_probs=86.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (721)
|.-..+-++| ++|+..|++||+|+|+++-.|.|||.+|.++|.++.|+.+..+||.+||. ..+|--+|.+|..+|+
T Consensus 88 GN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4444444455 99999999999999999999999999999999999999999999999998 5666677999999999
Q ss_pred HHHHHHHHHHHHhhCCCch
Q 004984 528 YQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~ 546 (721)
+++|++.|+|||+|+|++.
T Consensus 165 ~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHhhhccCCCcH
Confidence 9999999999999999994
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=1.5e-11 Score=124.24 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L-~~lg~--~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+..|++++.++|+++.++++.|.++ ...|+ .++|.+.+++|++++|++.+++.++|.+++.+|++++|++.|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444555567788888876 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCHH
Q 004984 667 MKRSFE 672 (721)
Q Consensus 667 i~~~~~ 672 (721)
+.|...
T Consensus 173 l~~~~~ 178 (198)
T PRK10370 173 LNSPRV 178 (198)
T ss_pred hCCCCc
Confidence 988744
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=9.4e-12 Score=116.50 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~ 674 (721)
++.+|+++|.++.++|++++|...++++++++|++++.++++|++++.+|++++|++.++++++++|+...+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 345667777788888888888888888888888888888888888888888888888888888888877653
No 82
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.36 E-value=4.8e-13 Score=151.42 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=119.8
Q ss_pred CCCCCccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCC----C
Q 004984 177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNG----V 250 (721)
Q Consensus 177 ~~~~~~DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~----i 250 (721)
+.+...|+.+.. +|+.++|||++|++++.||..||..-+.|+..-.+... .+..+.|+.+|+|+|+ ++..- -
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence 344555666655 78889999999999999999999999999988666665 4889999999999995 43330 1
Q ss_pred CHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCC
Q 004984 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (721)
Q Consensus 251 ~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (721)
..+-+.++|..||.|-+.+|+..|+.-|...++ ..+|-.+++||..|+|.+|...|++|+..|+...|.
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 345689999999999999999999999999994 899999999999999999999999999998866443
No 83
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=3.9e-11 Score=136.10 Aligned_cols=216 Identities=15% Similarity=0.043 Sum_probs=170.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~ 466 (721)
-.++..+...|-..+|...|++ .+.+.+...+|...|+..+|.....+-++ .|+.+..|.-+|+. -.--.
T Consensus 402 ~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChH
Confidence 3678888889999999998888 45566777889999999999888888888 89999999999887 44456
Q ss_pred HHHHHHhc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 467 DLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 467 d~~kAieL-dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
.|+||+++ +-.++.|.+++|......++|++|..++++.++++|- .+.|+.+|++..++++++.|..+|.+...++|+
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 78888888 5567788899999999999999999999999999995 899999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (721)
+..+.+..++.+.+. .+-.+ |-..+.+||.-+-.+...|-|--.+..+.|.+++|+
T Consensus 552 ~~eaWnNls~ayi~~------~~k~r------------------a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRL------KKKKR------------------AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred chhhhhhhhHHHHHH------hhhHH------------------HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 844333333222211 11111 345666777777777777777777777777777777
Q ss_pred HHHHHHHHhCCC
Q 004984 625 RSLQLARQHAAS 636 (721)
Q Consensus 625 ~~~~~Al~l~P~ 636 (721)
+.|.+-+.+.-+
T Consensus 608 ~A~~rll~~~~~ 619 (777)
T KOG1128|consen 608 KAYHRLLDLRKK 619 (777)
T ss_pred HHHHHHHHhhhh
Confidence 777777766544
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=2.6e-11 Score=142.89 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=115.9
Q ss_pred hcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH
Q 004984 443 SSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL 517 (721)
Q Consensus 443 ~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~ 517 (721)
..||.+..++.+.+. .+++++|...++++++++|++..+..++|.++.++++++||+..+++++..+|+ +..++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 344444444444432 234477777888999999999999999999999999999999999999999996 788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 004984 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (721)
Q Consensus 518 R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL 597 (721)
+|.++.++|++++|+..|+++++.+|++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~---------------------------------------------------- 187 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEF---------------------------------------------------- 187 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCc----------------------------------------------------
Confidence 9999999999999999888888866654
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (721)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (721)
+.++.++|.+|..+|+.++|...|++|++...+-.-.+.+
T Consensus 188 ------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 188 ------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 4567788889999999999999999999998887766443
No 85
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.33 E-value=5.8e-09 Score=124.56 Aligned_cols=277 Identities=8% Similarity=-0.046 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH----hhc
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER----SLY 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~r----g~~ 458 (721)
.+..+-..|...|++++|.+.|++..+ ....+|..+...|.+.|+.++|++.|++..+. .|+ ...|... +..
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~ 338 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRL 338 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Confidence 334455666667777777777765422 33445666666777777777777777666543 222 2222221 223
Q ss_pred CChhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLd-P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+..++|...+..+++.. +.+...|+.+...|.+.|++++|...|++.. .|+...|+.....|.+.|+.++|+..|++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34466666666666665 4556666777777777777777777777665 35555566666666777777777777776
Q ss_pred HHh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhhhccccccccc-hHHHHHHHHHhCCCCh
Q 004984 538 ILT--LSPDYRMFEGRVAASQLHMLVREHIDNWTIAD----------CWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKG 604 (721)
Q Consensus 538 al~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~ 604 (721)
..+ +.|+...|..-..+....+.++...+.++... .|..+.+.+.+.++.+ |...++++ ...| ++
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~ 494 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TV 494 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CH
Confidence 655 45665444333333333333333322222221 1112222222233333 45555544 1233 34
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
..|..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|.+.+++.-+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 567788888888999999999999999999998889999999999999999999888876654
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=5.8e-11 Score=137.72 Aligned_cols=248 Identities=16% Similarity=0.089 Sum_probs=190.2
Q ss_pred HhccchHHHHHHHHHHHhccchh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC----hh
Q 004984 394 LLRKEYDEAEHLFEAAVNAGHIY-------SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE----GD 462 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~----~~ 462 (721)
.....+.++.-+|-++++++-.- .+...+..-+.+.+...|+..+-+++.++++.|.+|.-.|.|.+ ..
T Consensus 430 ~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~ 509 (1238)
T KOG1127|consen 430 FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK 509 (1238)
T ss_pred cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 33455666666666666552111 11112222344556888888888999999999999988887643 36
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL---ECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
.|..+|+||.+|||+++.++...+..|.+....++|.+..-++-+..|.. ..|.-||..|.+-+++-+|+.+|+.|+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 77888999999999999999999999999999999999877777777742 335558888999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (721)
+.+|++ ..||..+++.+.+-+++. |+.++++|..++|.+.-..|-.+.....+|
T Consensus 590 R~dPkD-------------------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 590 RTDPKD-------------------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cCCchh-------------------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 999987 567888888888888888 888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHHHHh
Q 004984 619 CPEAAMRSLQLARQHAASDHERLVYEGWIL-------YDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L-------y~~G~~deAl~~ye~Ai~ 666 (721)
.+++|+..+...+....+..-++..+|.++ +-+|=.-.|...++++|+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999888888777666666665554 445667777777777765
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=3.2e-11 Score=112.92 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=93.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
.|.++++++|+++.+...+|..+...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 477888888888888888888888888888888888888888885 6777778888888888888777766666665554
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (721)
+..++++|.++..+|++++|+.
T Consensus 85 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 85 ----------------------------------------------------------PRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence 4567778888888888888888
Q ss_pred HHHHHHHhCCCChhH
Q 004984 626 SLQLARQHAASDHER 640 (721)
Q Consensus 626 ~~~~Al~l~P~~~ea 640 (721)
.++++++++|++...
T Consensus 107 ~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 107 ALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHhccccchH
Confidence 888888888887763
No 88
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.31 E-value=7.4e-09 Score=127.52 Aligned_cols=287 Identities=13% Similarity=0.053 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH---
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER--- 455 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~r--- 455 (721)
..+..+-..+...|++++|.+.|++..+.+ ....|..+...|.+.|+.++|++.|.+..+. .|+ ...|...
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 344444455555666666666666655542 2334444555566666666666666555443 222 2222111
Q ss_pred -hhcCChhHHHHHHHHHHh----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCH
Q 004984 456 -SLYCEGDKRWEDLDKATA----LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDY 528 (721)
Q Consensus 456 -g~~~~~~eAl~d~~kAie----LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P~~~~~~~R~~~~~~lgd~ 528 (721)
+..+..++|...|++..+ +.|+ ...|..+-.+|.+.|++++|+..|++..+.+ |+...|......|.+.|++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 222334666666665543 3444 3455556666666666666666666666543 2344444455556666666
Q ss_pred HHHHHHHHHHHhh--CCCchhhhhhHHHHHHHHHHHHhhhhhhH---------HHHHHhhhhccccccccc-hHHHHHHH
Q 004984 529 QAALCDVQAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTI---------ADCWLQLYDRWSSVDDIG-SLSVIYQM 596 (721)
Q Consensus 529 eeAl~d~~kal~L--~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------A~~~~~l~~~~~~~dd~~-al~~~~qa 596 (721)
++|+..|+...+. .|+...|..-..+....+.++.+.+.+++ ...|..+...+...++.+ |..+++++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666665553 45532222222222222222222222221 122333334444445555 57788887
Q ss_pred HHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC
Q 004984 597 LES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRS 670 (721)
Q Consensus 597 L~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~--i~~~ 670 (721)
.+. .| +...|+.+-..+.+.|++++|++.+++..+ +.|+ ...+..+-..+...|++++|+..+++.++ +.|+
T Consensus 711 ~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 711 KSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 654 44 567799999999999999999999997765 4565 55777777888899999999999999987 5777
Q ss_pred HHHH
Q 004984 671 FEAF 674 (721)
Q Consensus 671 ~~a~ 674 (721)
...|
T Consensus 789 ~~ty 792 (1060)
T PLN03218 789 LVMC 792 (1060)
T ss_pred HHHH
Confidence 6644
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=4.1e-09 Score=120.57 Aligned_cols=315 Identities=16% Similarity=0.069 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHhh-
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSL- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~~~ay~~rg~- 457 (721)
...+-.+.......|++..+.+.|++++.. +...-|+.++..+...|....|+...+...... |+....+..-++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 344556777888899999999999999877 556678888999999999999999999988887 765555544332
Q ss_pred ----cCChhHHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCC-HHHHH
Q 004984 458 ----YCEGDKRWEDLDKATALD-----PTLSYPYMYRASSLMTKQN-----------VEAALAEINRILGFKLA-LECLE 516 (721)
Q Consensus 458 ----~~~~~eAl~d~~kAieLd-----P~~~~ay~~rg~~l~~lg~-----------~~eAl~~~~kAL~l~P~-~~~~~ 516 (721)
.+..++++..-.|||.+- --.+..|.-.|.+|-.+-+ +.+++..+++|++++|+ +...+
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if 482 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF 482 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 234499999999999832 1225678888888865432 67899999999999995 88888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH-----------------------
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC----------------------- 573 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~----------------------- 573 (721)
..+.-|...++.+.|+...+++++++|.+. ..+..++.++....+++..|.-
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDS-----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 999999999999999999999999999874 3345555555555555544421
Q ss_pred ------------HHhhhhcccc-------c-----------------cccchHHHHH--------HHHHhC---------
Q 004984 574 ------------WLQLYDRWSS-------V-----------------DDIGSLSVIY--------QMLESD--------- 600 (721)
Q Consensus 574 ------------~~~l~~~~~~-------~-----------------dd~~al~~~~--------qaL~l~--------- 600 (721)
+.+....|.. . +-.++..... |.....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 1112222331 0 1111111111 111111
Q ss_pred --CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 601 --APKG-------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 601 --P~~~-------~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
|+.. ..|...|.++.+.+...+|..++..|-.+.|-.+..++-+|..+...|.++||.+.|.-|+.++|+-
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 2333 3466889999999999999999999999999999999999999999999999999999999999987
Q ss_pred H-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984 672 E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (721)
Q Consensus 672 ~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (721)
. +---.|-.+.-.+ ..+=...-++|-||+|=
T Consensus 718 v~s~~Ala~~lle~G--~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 718 VPSMTALAELLLELG--SPRLAEKRSLLSDALRL 749 (799)
T ss_pred cHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh
Confidence 6 8777888877777 22233445789999874
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=1.6e-10 Score=134.19 Aligned_cols=163 Identities=13% Similarity=-0.007 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHhhc
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP--LGWMYQERSLY 458 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~--~~~ay~~rg~~ 458 (721)
+.++.-+|..|..-.+...|.++|++|.++++.++ ..+.+..|....+.+.|.....++-+..|. --+.|..||-|
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 67888899999998899999999999999976654 556777899999999998876666666553 23555557765
Q ss_pred ----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 004984 459 ----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 459 ----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~~~~~lgd~eeAl~ 533 (721)
+...+|+.+|.-|++.+|++...|..+|.+|.+-|++..|+..|+||..++|..- .-+.-+.....+|.|++|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 2338999999999999999999999999999999999999999999999999643 33456778899999999999
Q ss_pred HHHHHHhhCCCc
Q 004984 534 DVQAILTLSPDY 545 (721)
Q Consensus 534 d~~kal~L~P~~ 545 (721)
-+..++.-...+
T Consensus 652 ~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 652 ALGLIIYAFSLE 663 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 999888765554
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.7e-10 Score=129.10 Aligned_cols=266 Identities=16% Similarity=0.076 Sum_probs=191.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------cCC-------CcHH
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------SVT-------PLGW 450 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--------~~~-------~~~~ 450 (721)
.|.....+...+.|++|+.-++++....-.+++..++.. .++.. ..+..+..... ..| +++.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~ 207 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGE--KQEED-SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAE 207 (508)
T ss_pred HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccc--ccccc-ccchhhHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 455666666777788888777765433212223322211 11110 11111111111 122 3777
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HH
Q 004984 451 MYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LE 513 (721)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAieL--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--------P~-~~ 513 (721)
+|..+|++ ++|..-+.+|++. .|..+...++.|.+|+.++++.+|+..|++|+.+- |. ..
T Consensus 208 ~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 208 MYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 88888777 9999999999999 88888888999999999999999999999999872 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
.+.+++.+|...|++++|...+++|+++--.- ....++++ .......+......+++|. .++.+ ++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~--------al~ 353 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK---KLLQK--------ALK 353 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH---HHHHH--------HHH
Confidence 45778999999999999999999999976541 11233333 4666777777788888884 22221 344
Q ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 592 VIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAE 662 (721)
Q Consensus 592 ~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~Ly~~G~~deAl~~ye 662 (721)
.+.++..-+ |.-+..+.|+|.++..+|+++||.+.|++|+... +..+-.++++|..+++.+++++|-+.|+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 444444443 3667789999999999999999999999999886 3456789999999999999999999999
Q ss_pred HHHhcC
Q 004984 663 ESIQMK 668 (721)
Q Consensus 663 ~Ai~i~ 668 (721)
+++.|.
T Consensus 434 ~~~~i~ 439 (508)
T KOG1840|consen 434 EAKDIM 439 (508)
T ss_pred HHHHHH
Confidence 999984
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=9.7e-09 Score=107.72 Aligned_cols=302 Identities=13% Similarity=0.015 Sum_probs=224.6
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHH
Q 004984 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARL 424 (721)
Q Consensus 347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~ 424 (721)
..+...|+......+. ...+.+.+++.+ |..|+-++...+.++|+..|-..++.++ .+++.-+|+.
T Consensus 11 vaaa~GWymgrrsaqq----~~~~qa~~lsr~--------Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnL 78 (389)
T COG2956 11 VAAAYGWYMGRRSAQQ----DKQDQANRLSRD--------YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNL 78 (389)
T ss_pred HHHHHHHHHhhhHHHh----hHHHHHhhccHH--------HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4567788865422111 112223334443 3567777788899999999999888854 4467778999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTPL-----GWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~~-----~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~ 495 (721)
+..+|..+.|++.....++ .|++ ..+.++.|+ .|.++.|-..|+.-++..---..|.-.+-.+|......
T Consensus 79 fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 79 FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 9999999999987664444 3331 233333332 13338888888877765555567888899999999999
Q ss_pred HHHHHHHHHHHhcCCCH---HH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 004984 496 EAALAEINRILGFKLAL---EC---LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (721)
Q Consensus 496 ~eAl~~~~kAL~l~P~~---~~---~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (721)
+.||+...+...+.|+. +. +--.+..+....+.+.|+..+.||++-||+. +.+...+|.+.....+++
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQ 231 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchH
Confidence 99999999999888852 22 2235666778889999999999999999998 556777777777777777
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L 648 (721)
+| +..++++++-||.. ++....+..++..+|++++.+..++++.+..+.. ++...+....
T Consensus 232 ~A------------------V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~li 292 (389)
T COG2956 232 KA------------------VEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLI 292 (389)
T ss_pred HH------------------HHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHH
Confidence 77 77788888888876 4556778889999999999999999999999984 4555566666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 004984 649 YDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ 686 (721)
Q Consensus 649 y~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~ 686 (721)
....-.++|-....+=+.-+|+.- -+.+-.|-++|-+=
T Consensus 293 e~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 293 ELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 666667888889999999999999 66789999999764
No 93
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=7.6e-09 Score=116.18 Aligned_cols=265 Identities=16% Similarity=0.052 Sum_probs=212.6
Q ss_pred ccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChhHHHHHHH
Q 004984 396 RKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLD 469 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~eAl~d~~ 469 (721)
-|-.++-...+++|+..- ....+.-.+.-+...||.-+|...+.+|++.+|+.-.+|..- +...+++.|..-|.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 466777777888888772 333445556677888999999999999999999987777665 33456688888899
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (721)
Q Consensus 470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~ 548 (721)
||-...|+ ...|+.-+....-+++.+||+.-++++|+.-|++. .|...|.++..+++.+.|...|..-++.-|+-+
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-- 719 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-- 719 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc--
Confidence 98887776 46788888888889999999999999999888854 445588899999999999999999999999873
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (721)
....++..+++...+...| -++++++.-.+|.++.+|.-.=-.-++.|+.+.|.....
T Consensus 720 ----pLWllLakleEk~~~~~rA------------------R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 720 ----PLWLLLAKLEEKDGQLVRA------------------RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred ----hHHHHHHHHHHHhcchhhH------------------HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666666666666666 667888888888888888877777888888888888888
Q ss_pred HHHHhCCC------------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHH
Q 004984 629 LARQHAAS------------------------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFF 675 (721)
Q Consensus 629 ~Al~l~P~------------------------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~---a~~ 675 (721)
+||+--|+ |+..+...|-.++...++++|...|+||+.++|++. |||
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 88887774 555666778888899999999999999999999987 999
Q ss_pred HHHHHhhccC
Q 004984 676 LKAYALADSS 685 (721)
Q Consensus 676 ~~~~~~~~~~ 685 (721)
.|=++..-+-
T Consensus 858 ykfel~hG~e 867 (913)
T KOG0495|consen 858 YKFELRHGTE 867 (913)
T ss_pred HHHHHHhCCH
Confidence 9988876543
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=7.4e-10 Score=119.43 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=166.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G--~~~~A~~~~~~aI~~~~~~~~ay~~rg~~--- 458 (721)
.+.+..++..|+++.|++...--=+.+. ..|-.++..+++.+| ++..|-..-..|+.++..++.++.+.|+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3456667788888888876654222221 223345666777776 44556666677788877788888888763
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
|++++|.+-|..|+.-|...+++.+|.|..+-.+|+.++|+..|-|.-.+-.+ .+-++..+.+|.-+.+..+||+.+.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 67788888888898888888899999999988899999999888876665443 5666777888888888899999998
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhC
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA-DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESD 600 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-~~~~~l~~~~~~--------------~dd~~-al~~~~qaL~l~ 600 (721)
++..+=|+++. .+..++.+...-.+-.+| .|+-.-|-.+.. ....+ |+..+++|--+.
T Consensus 583 q~~slip~dp~------ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 583 QANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 88888888843 333332222222222222 111111111100 01111 345566666666
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
|+.+.-....+.|+.+.|.++.|...|+..-+.-|.+.+-+-.+--+--++|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 6666666666666666666666666666666666666666655555555544
No 95
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.28 E-value=9e-09 Score=126.75 Aligned_cols=315 Identities=10% Similarity=0.001 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER--- 455 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~r--- 455 (721)
...|..+=..+...|++++|.+.|++..+.+ ....+..+-..|.+.|+.++|.+.|.+..+... ++...|...
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4455556666778899999999999988774 344566677889999999999999998887532 233333222
Q ss_pred -hhcCChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCH
Q 004984 456 -SLYCEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKLALECLELRFCFFLALEDY 528 (721)
Q Consensus 456 -g~~~~~~eAl~d~~kAie--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~----l~P~~~~~~~R~~~~~~lgd~ 528 (721)
.+.++.++|+..|++..+ +.|+ ...|+.+..++.+.|++++|...|++..+ +.|+...+......|.+.|++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 234555999999988865 4565 67899999999999999999999999865 577777677777789999999
Q ss_pred HHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH---------HHHHhhhhccccccccc-hHHHHHHH
Q 004984 529 QAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA---------DCWLQLYDRWSSVDDIG-SLSVIYQM 596 (721)
Q Consensus 529 eeAl~d~~kal~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------~~~~~l~~~~~~~dd~~-al~~~~qa 596 (721)
++|++.|+...+.+ |+-..|..-+.++...+.++.+.+-+++. ..|..+.+.+...++.+ |..++++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999876 33333333333333333333333333222 24455555555566666 77788888
Q ss_pred HHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCH
Q 004984 597 LESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF 671 (721)
Q Consensus 597 L~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~--i~~~~ 671 (721)
++.. +-+...|..+...+.+.|+.++|++.|+...+ +.|+ ...+..+-..+.+.|++++|+..+++... +.|+.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8765 44567888888888888888888888887755 4564 56788888888888888888888887654 67887
Q ss_pred HHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 672 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
..|..---++.... .-....++++++.+
T Consensus 755 ~Ty~sLL~a~~k~G----~le~A~~l~~~M~k 782 (1060)
T PLN03218 755 ITYSILLVASERKD----DADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 76665444444322 23445556665543
No 96
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.28 E-value=3.8e-09 Score=126.11 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CC------cHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TP------LGWM 451 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~------~~~a 451 (721)
...|..+...+.+.|++++|++.|++.++.+. ...+..+-.++...|+...+...+..+++.. |+ +..+
T Consensus 189 ~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 45566667777777778888887777765531 1222223333333444444433333333221 10 1122
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 004984 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ 529 (721)
Q Consensus 452 y~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e 529 (721)
|... |+.++|...|++. .+.+...|+.+...|...|++++|+..|++..+ +.|+...+.....++.++|+++
T Consensus 269 y~k~---g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 269 YSKC---GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHC---CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 2222 3336666555543 234555666666666666666666666665543 3444444444444555555555
Q ss_pred HHHHHHHHHHhh
Q 004984 530 AALCDVQAILTL 541 (721)
Q Consensus 530 eAl~d~~kal~L 541 (721)
+|.+.+..+++.
T Consensus 343 ~a~~i~~~m~~~ 354 (697)
T PLN03081 343 HAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=2.6e-09 Score=130.71 Aligned_cols=302 Identities=16% Similarity=0.090 Sum_probs=202.7
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c----h
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAE------TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H----I 415 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~------~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~----~ 415 (721)
....|+..... +......+++++..... ...........+|.++...|++++|...+++|++. . . .
T Consensus 413 ~~~a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 34455544332 44555556665443211 11113344456888999999999999999999884 1 1 1
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------cHHHHHHHhhcCChhHHHHHHHHHHhcCCC-----
Q 004984 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------------LGWMYQERSLYCEGDKRWEDLDKATALDPT----- 477 (721)
Q Consensus 416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~----- 477 (721)
.+...+|.++...|++++|...+.+++..... .+.++..+ |+.++|...+++++++-..
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ---GFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhcccc
Confidence 24566888899999999999999999875332 23333444 4459999999999887222
Q ss_pred ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984 478 ---LSYPYMYRASSLMTKQNVEAALAEINRILGFKL----A--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (721)
Q Consensus 478 ---~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P----~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~ 548 (721)
....+..+|.++...|++++|.+.+++++.+.. . ...+..++.++...|++++|.+.++++..+.+.....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 234567889999999999999999999988632 2 2334457889999999999999999998875543110
Q ss_pred -hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHH
Q 004984 549 -EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 549 -~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeA 623 (721)
..................+.+.|..|... .....+... ..+..+|.++..+|++++|
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~------------------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 710 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQ------------------APKPEFANNHFLQGQWRNIARAQILLGQFDEA 710 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHh------------------cCCCCCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 00000111111122224455555433222 221111111 2256789999999999999
Q ss_pred HHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 624 MRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 624 l~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
...+++|++... ..+.++..+|.+++..|+.++|...+++|+++-....
T Consensus 711 ~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 711 EIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 999999998743 3446889999999999999999999999999854433
No 98
>PLN03077 Protein ECB2; Provisional
Probab=99.25 E-value=4.6e-08 Score=119.53 Aligned_cols=270 Identities=10% Similarity=0.028 Sum_probs=164.5
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~a 441 (721)
.+...++++.+.+.... .+...+..+-..|...|++++|.+.|++..+. ...+|..+...+.+.|+.++|+..|.+.
T Consensus 405 ~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 405 LDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555554432211 12345566777788888999998888875443 3446677777888888888888888887
Q ss_pred HhcCCCcHHHHHH-------H--------------------------------hhcCChhHHHHHHHHHHhcCCCChHHH
Q 004984 442 ISSVTPLGWMYQE-------R--------------------------------SLYCEGDKRWEDLDKATALDPTLSYPY 482 (721)
Q Consensus 442 I~~~~~~~~ay~~-------r--------------------------------g~~~~~~eAl~d~~kAieLdP~~~~ay 482 (721)
+...+++...|.. . ++.|+.++|+..|+.. +.+...|
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 7543333222211 1 1123335565555554 3445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCchhhhhhHHHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAILT---LSPDYRMFEGRVAASQL 557 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~---L~P~~~~~~~~~~a~~~ 557 (721)
+.+...|...|+.++|+..|++.++ +.|+...+...-.++...|++++|...|+...+ +.|+-..
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~---------- 627 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH---------- 627 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH----------
Confidence 6666666666666666666665554 344433333333445556666666666665552 3444211
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (721)
..|.+.++-+ .++.+ |...++++ .+.|+ +..|..+-.+...-|..+.|....+++++++|+
T Consensus 628 -------------y~~lv~~l~r---~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 628 -------------YACVVDLLGR---AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred -------------HHHHHHHHHh---CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 1111222222 22222 35566665 35555 455655555667788899999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 637 ~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
++..++.+++++...|++++|.+..+.-.+
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999988776654
No 99
>PLN03077 Protein ECB2; Provisional
Probab=99.25 E-value=7.5e-09 Score=126.38 Aligned_cols=329 Identities=10% Similarity=-0.024 Sum_probs=201.5
Q ss_pred cccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh
Q 004984 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419 (721)
Q Consensus 340 v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~ 419 (721)
+.+..+.+..+++-.... ...+...+++..+.+... ..+...+..+...+...|++++|.+.|++..+ ....+|.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELL--GDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH
Confidence 344555566666544322 123344455555444221 11355667788888999999999999998543 3455677
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhc--CCC---cHHHHHHHhhcCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcC
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISS--VTP---LGWMYQERSLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQ 493 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~--~~~---~~~ay~~rg~~~~~~eAl~d~~kAieLdP~-~~~ay~~rg~~l~~lg 493 (721)
.+...|.+.|++++|++.|++..+. .|+ ...+....+..++.++|.+.++.+++.... +...|+.+-..|.+.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 8888999999999999999977654 344 233333334456669999999888887543 4677888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-
Q 004984 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIA- 571 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A- 571 (721)
++++|...|++.. +|+...|......|...|+.++|+..|++... +.|+...+..-..+....+.++...+-+..+
T Consensus 439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999876 46666677777778889999999999999875 5677655544444444444444433333222
Q ss_pred -----------HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCC
Q 004984 572 -----------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASD 637 (721)
Q Consensus 572 -----------~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~ 637 (721)
.+++..|-+ .++++ |...|+++ +.+...|+.+...+.+.|+.++|++.|++..+ +.||.
T Consensus 517 ~~g~~~~~~~~naLi~~y~k---~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVR---CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HhCCCccceechHHHHHHHH---cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 111122222 12222 34444443 44555666666666666666666666665554 33442
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHhhc
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESI---QMKRSFEAFFLKAYALAD 683 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai---~i~~~~~a~~~~~~~~~~ 683 (721)
. .+..+=..+...|++++|+..|++.. .+.|+.+.|..-..+|+-
T Consensus 590 ~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 590 V-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred c-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 2 33333344555566666666666554 245665555544444433
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-09 Score=116.01 Aligned_cols=251 Identities=15% Similarity=0.015 Sum_probs=194.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (721)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~ 440 (721)
...+..+|. ++|...+.-. +.-..|..+...|++++-...-...+.+ .+..-|+--|.+.+...++..|+..-.+
T Consensus 249 ~~a~~~Fe~-~~~~dpy~i~--~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSS-TLCANPDNVE--AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHH-HhhCChhhhh--hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 345556666 3333333222 2234566677788887766666665555 3444566667788889999999999999
Q ss_pred HHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 004984 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL 515 (721)
Q Consensus 441 aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~ 515 (721)
+|..+|++-.+|.-.|.. ++.++|+-.|+.|+.|.|-.-..|-.+-..|...|++.||+...+.++..=|+ ...+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 999999999998888753 66799999999999999999999999999999999999999999999998785 6777
Q ss_pred HHHH-H-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 004984 516 ELRF-C-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (721)
Q Consensus 516 ~~R~-~-~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~ 593 (721)
.+.| . ++..----|+|..-++++++++|+|..+ .... | .+.......+|+ ++.+
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A------V~~~------------A----EL~~~Eg~~~D~--i~LL 461 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA------VNLI------------A----ELCQVEGPTKDI--IKLL 461 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH------HHHH------------H----HHHHhhCccchH--HHHH
Confidence 7776 3 3334444689999999999999999532 2221 1 233333344444 8999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
++.|...|.. .+|.-+|.++...|-+++||+.|..|++++|++.-++
T Consensus 462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999999875 6799999999999999999999999999999988654
No 101
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.8e-09 Score=114.04 Aligned_cols=208 Identities=11% Similarity=0.059 Sum_probs=100.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CC
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE 460 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~ 460 (721)
.+.|.+.+..|+|+.|.+.|+.||.-+. ..|+++.|..+-.+|+.++|+.+|-+.-.+-.+++..+++...+ ..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 3444555555555555555555554422 33445555555555555555555555444444444444444332 12
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
...|++.|.+|..+=|+++.....+|.+|-+.|+-.+|...+=..-..=| +.+....++.-|+...=++.||..|++|.
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 24455555555555555555555555555555555555555544444444 23333444444555555555555555555
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (721)
-+.|+-.-|. +. .|.| +.+.+.+. |+..|.+.....|.+.+..--+-.+--.+|
T Consensus 654 liqp~~~kwq-------lm-----------iasc-------~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 654 LIQPNQSKWQ-------LM-----------IASC-------FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred hcCccHHHHH-------HH-----------HHHH-------HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 5555531111 00 0111 11122233 477778888888887775533333333344
Q ss_pred C
Q 004984 619 C 619 (721)
Q Consensus 619 ~ 619 (721)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 3
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.18 E-value=2.5e-10 Score=125.60 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (721)
|..++..|++ ++|+..|++||+++|+++.+|.+||.++..+|++++|+.++++||.++|+ +..++.+|.++..+|+
T Consensus 9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444455445 89999999999999999999999999999999999999999999999996 7778889999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh
Q 004984 528 YQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~~ 547 (721)
+++|+..|+++++++|++..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999854
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.15 E-value=7.3e-10 Score=127.13 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc-chH
Q 004984 515 LELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI-GSL 590 (721)
Q Consensus 515 ~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~-~al 590 (721)
++.||.-+...++ .+.|+..|++|+++||+|..++...+..+... ..|... . -.+. .+.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~------~~~~~~----------~-~~~l~~a~ 404 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR------HSQQPL----------D-EKQLAALS 404 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HhcCCc----------c-HHHHHHHH
Confidence 3567766655544 77888889999999999854332221111110 000000 0 0001 123
Q ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 591 SVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 591 ~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
....+++++ +|..+.+|.-+|......|++++|++.+++|++++| +..+|..+|.++...|++++|+..|++|+.++
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456676774 889999999999999999999999999999999999 58999999999999999999999999999999
Q ss_pred CCHHHHHH
Q 004984 669 RSFEAFFL 676 (721)
Q Consensus 669 ~~~~a~~~ 676 (721)
|+++.|++
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 99997765
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=6.2e-10 Score=122.42 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~ 560 (721)
+...|..+...|++++|+..|++||+++|+ +..+.+||.++..+|++++|+.++++|++++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456788888889999999999999999996 7778888888999999888888888777777765
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
+.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3567888999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 004984 641 LVYEGWILYDT 651 (721)
Q Consensus 641 ~~~~G~~Ly~~ 651 (721)
+..++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 88888776555
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=1.6e-08 Score=113.94 Aligned_cols=266 Identities=13% Similarity=-0.006 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC---
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC--- 459 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~--- 459 (721)
+++....-..+.|+|....+..++.|+. .|.++++-.|..+.-+|+.++|+...+.++..++.....|.-.|.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3444445556778899999999998887 68889999999999999999999999999999998777777776543
Q ss_pred -ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 460 -EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 460 -~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
++++|+.+|..|+.++|+|...|..++....++++++.....-++-++++|+. ..|.-.+..+.-.|++..|+.-.+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999974 4455677788999999999887766
Q ss_pred HHhhC---CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHH
Q 004984 538 ILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQS 611 (721)
Q Consensus 538 al~L~---P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g 611 (721)
-.... |.... +-+.....-+..+.......++| ++.-....| +..-....+|
T Consensus 169 f~~t~~~~~s~~~-~e~se~~Ly~n~i~~E~g~~q~a---------------------le~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 169 FEKTQNTSPSKED-YEHSELLLYQNQILIEAGSLQKA---------------------LEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred HHHhhccCCCHHH-HHHHHHHHHHHHHHHHcccHHHH---------------------HHHHHhhhhHHHHHHHHhhhHH
Confidence 66644 43211 11122111111111111112222 111111111 1223345689
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHH
Q 004984 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly-~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
.++.+++++|+|...|+.-+..+||+.+=+..+-.++. -++..+-=-..|.+.-+.=|-++
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999987776666664 34433332266776666655555
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=5.1e-09 Score=107.44 Aligned_cols=177 Identities=16% Similarity=0.018 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..+...+-++...+|++... .+++..+...|+-+.++....++.--.|. .+.+...|......|++.+|+..++++.+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 44555566667777777777 77777777777777777777775555553 44444566667777777777777777777
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
++|++ ..++..++.......+.+.| -.-|.|++++.|+++...+|+|..+.-.|+.
T Consensus 129 l~p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 77776 33444444444444444444 3456777777777788888888888888888
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
+.|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888888888888888888888888888888888888655444
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=1e-08 Score=115.47 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=183.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~ 500 (721)
.+..++|...++.....++.+|..|..+-..|. .|+.++|...-..++..||...--|.-+|.++...++|+|||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 577789999999999999999999999988875 3677999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
.|+.|+.+.|+ ...+.-.+.+...+||++.....=.+.++++|.+.+ +.|-..+.++.+.-..+....++.. +.-
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~---~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE---KTQ 173 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 99999999996 688888999999999999999999999999999865 5566666666655444444444442 111
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (721)
Q Consensus 579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl 658 (721)
+.-. +-..+++. ++...+...+...|.+++|++....-=..--|.---.-.+|.++.++|++++|.
T Consensus 174 ~~~~------s~~~~e~s--------e~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 174 NTSP------SKEDYEHS--------ELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred ccCC------CHHHHHHH--------HHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 1000 01122222 233445566777888887777655433322233334456789999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHH
Q 004984 659 RKAEESIQMKRSFEAFFLKAY 679 (721)
Q Consensus 659 ~~ye~Ai~i~~~~~a~~~~~~ 679 (721)
..|+.-|..+|+.-+|+..-.
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHH
Confidence 999999999999998876543
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=5.1e-09 Score=107.42 Aligned_cols=164 Identities=16% Similarity=0.010 Sum_probs=136.5
Q ss_pred HHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcC
Q 004984 402 AEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALD 475 (721)
Q Consensus 402 A~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLd 475 (721)
|...+-++...+ .... .+++..++..|+-+.+.....++.-.+|..+..+...| ..|++.+|+..+.||.+++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333444444443 3445 78899999999999999999988888887665553332 2355599999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
|+++.+|+-+|.+|.+.|++++|-..|++|+++.|+ +....|.|+.+.-.||++.|...+..+...-|.+ ..+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v 204 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRV 204 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHH
Confidence 999999999999999999999999999999999996 8888999999999999999999999999988877 457
Q ss_pred HHHHHHHHHhhhhhhHHH
Q 004984 555 SQLHMLVREHIDNWTIAD 572 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~ 572 (721)
.+.+.++...+.+++.|.
T Consensus 205 ~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 205 RQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHHhhcCChHHHH
Confidence 777777888888888885
No 109
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.08 E-value=1.1e-07 Score=90.88 Aligned_cols=197 Identities=21% Similarity=0.226 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHH
Q 004984 462 DKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFC-FFLALEDYQAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAie--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~-~~~~lgd~eeAl~d~~k 537 (721)
..++..+..++. ..|.....+...|..+...+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444445554 666777777777777777777777777777777766653 32333444 67777777777777777
Q ss_pred HHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHH
Q 004984 538 ILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLL 615 (721)
Q Consensus 538 al~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~-~~~~~~~~g~~L~ 615 (721)
++..+|. ... .......+........++. ++..+.+++...|. ....+.+.+..+.
T Consensus 156 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 156 ALELDPELNEL----AEALLALGALLEALGRYEE------------------ALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHhcCCCccch----HHHHHHhhhHHHHhcCHHH------------------HHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 7776663 100 1111111111111122222 36677777888877 6888888999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (721)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (721)
..+..++|+..+..++...|+........+..+...|.++++...+++++...|. ++..|+.+..
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL 278 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence 9999999999999999999998888999999999888899999999999999997 4444444433
No 110
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=3.2e-10 Score=93.99 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G-~~deAl~~ye~Ai~i~~ 669 (721)
++..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|++.+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 67899999999999999999999999999999999999999999999999 79999999999999998
No 111
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.08 E-value=1.1e-10 Score=122.45 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=145.2
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc
Q 004984 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLAL 525 (721)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~l 525 (721)
.-|.-|+.+|.| +|||.+|.++|.++|.++-.|.|||.+|..++++..|..|.+.||.||-.+ .+|..|+.+...+
T Consensus 102 E~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred Hhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457777888777 999999999999999999999999999999999999999999999988764 5566688899999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--hhhhH-------HH-HHHhhh-hc-----ccccccc-c
Q 004984 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI--DNWTI-------AD-CWLQLY-DR-----WSSVDDI-G 588 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~--~~~~~-------A~-~~~~l~-~~-----~~~~dd~-~ 588 (721)
|..++|..||+.+|+|.|+..... .....+.... +-..+ |. -..|.. .+ ++.-..+ .
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk------K~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK------KSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH------HHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 999999999999999999974311 1111111000 00000 00 000111 00 0000111 1
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
++.++-+.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+---.|...|+-+.++-++.+.
T Consensus 253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 344555555555556666656 6666666677777777777777777766666666776666677777777777777666
Q ss_pred CCHH
Q 004984 669 RSFE 672 (721)
Q Consensus 669 ~~~~ 672 (721)
|..+
T Consensus 332 P~~~ 335 (536)
T KOG4648|consen 332 PAVE 335 (536)
T ss_pred cccc
Confidence 6654
No 112
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=2.5e-09 Score=118.09 Aligned_cols=144 Identities=12% Similarity=0.113 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHH---hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccccc--cccchHHHHHHHHHhC
Q 004984 527 DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWSSV--DDIGSLSVIYQMLESD 600 (721)
Q Consensus 527 d~eeAl~d~~kal---~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~~~--dd~~al~~~~qaL~l~ 600 (721)
+.+.|+..|++|+ ++||+|..+++-. |.|+++. +-.|+.. +..+++...++|+++|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~l------------------A~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLL------------------AECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHH------------------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 4567788888888 8888885443322 3333333 3334331 1222677999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (721)
|.++.+++..|.++...|+++.|+..+++|+.++|+.+.++++.||++.-.|+.++|++..++|++++|.=. |=-+|=+
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 7777776
Q ss_pred H--hhccCCCC
Q 004984 680 A--LADSSQDS 688 (721)
Q Consensus 680 ~--~~~~~~~~ 688 (721)
. +.-+.||-
T Consensus 415 ~~~~~~~~~~~ 425 (458)
T PRK11906 415 VDMYVPNPLKN 425 (458)
T ss_pred HHHHcCCchhh
Confidence 5 56666664
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.06 E-value=1.6e-08 Score=120.75 Aligned_cols=146 Identities=11% Similarity=-0.049 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~ 459 (721)
+..++..+...+...+++++|++..+.+++.. ...+++.+|.++++.|++..|... +++...+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---------- 97 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---------- 97 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----------
Confidence 34666778888889999999999999999884 455788889999999998777554 4554443222
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
..+++++|-+.+...|++-+|++.+|.+|-.+|+.++|.+.|+++|+++|+ +.++++.|..|... ++++|+..+.+|
T Consensus 98 -~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 -KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred -chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 013344444455555555555555555555555555555555555555553 45555555555555 555555555555
Q ss_pred Hhh
Q 004984 539 LTL 541 (721)
Q Consensus 539 l~L 541 (721)
++.
T Consensus 176 V~~ 178 (906)
T PRK14720 176 IYR 178 (906)
T ss_pred HHH
Confidence 554
No 114
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=6.7e-10 Score=92.07 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P 543 (721)
+++..|.++|.+++.+|++++|+..|++||+++|+ +..++++|.++..+| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999997 788899999999999 79999999999999998
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=4.2e-09 Score=101.53 Aligned_cols=110 Identities=9% Similarity=-0.026 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
.+..+..|..+...|++++|.+-|+.+..+||.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------------------------------------- 67 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------------------------------------- 67 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------------------------------
Confidence 455666777777778877777766665555554
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--- 668 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~--- 668 (721)
+++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.+++..|+.++|.+.|+.||++-
T Consensus 68 -----------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 68 -----------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred -----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 456788888888888888888888888888888888888888888888888888888888888873
Q ss_pred CCHHHHHHHHH
Q 004984 669 RSFEAFFLKAY 679 (721)
Q Consensus 669 ~~~~a~~~~~~ 679 (721)
|.+..---||-
T Consensus 137 ~~~~~l~~~A~ 147 (157)
T PRK15363 137 SEHQILRQRAE 147 (157)
T ss_pred hhHHHHHHHHH
Confidence 55555444443
No 116
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.03 E-value=9.8e-07 Score=99.67 Aligned_cols=252 Identities=11% Similarity=-0.043 Sum_probs=173.9
Q ss_pred HHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHH
Q 004984 393 RLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWED 467 (721)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d 467 (721)
.....++++|...|.+|-.. +-...|..-+++-.-+|..++|++.++++++.+|.....|...|++ +..+.|.+.
T Consensus 628 e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456777777777777665 3344555555666667777777777777777777777777766654 233666777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
|..-+...|+....|..++.+--..|+.-.|-..++|+.--||+ ...|...-.+-++.|..+.|.....+||+--|+..
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 77777777777777777777777777777777777777777775 34333334455667777777777777777777762
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (721)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (721)
......--+....++-+ -...||..+-++++...-.|.++..-..++.|..+
T Consensus 788 ------~LWaEaI~le~~~~rkT----------------------ks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 788 ------LLWAEAIWLEPRPQRKT----------------------KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred ------hhHHHHHHhccCcccch----------------------HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111 23457888888899999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
|.+|+..+|++++++.+.=-.....|.-+.-...|.+-..-.|...
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 9999999999999988777777777876666667776666666554
No 117
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.00 E-value=1.1e-06 Score=94.88 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCC------cHHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTP------LGWMY 452 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~------~~~ay 452 (721)
+...-+-|...+.-|+|..|++...++-+-+. .-++..-+++-.++||.+.|-.++.++-+. +++ .+...
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44556778888999999999999999766643 434455577889999999999999999998 443 23444
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CHHHHHHHHH--HHHhcC
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFC--FFLALE 526 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P----~~~~~~~R~~--~~~~lg 526 (721)
.++|++ ..|..-.+++.+..|.++....-.--+|...|++++.+....+.-+-.- ....+.+.++ ++.+.+
T Consensus 164 l~~~d~---~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 164 LNRRDY---PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HhCCCc---hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 455555 9999999999999999999999999999999999999888777665433 1233344443 333333
Q ss_pred CHHHHHH------HHHHHHhhCCCchhhh-hhH-------HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984 527 DYQAALC------DVQAILTLSPDYRMFE-GRV-------AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (721)
Q Consensus 527 d~eeAl~------d~~kal~L~P~~~~~~-~~~-------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~ 592 (721)
+-+.+.. +.-+.++-+|.-...+ -+. .|... ..+...++|+.= +..++++..--|.-.=+..
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~--i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI--IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH--HHHHHHhccChh--HHHHHhhcCCCCchHHHHH
Confidence 3333332 1223333334321110 000 01111 111122222222 2233333322222223446
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
+++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++|-+.+++++.+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776 445677777777777777777777777653
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=3.5e-09 Score=102.04 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|...|+-...+||.++..|+++|.++..+|++++||..|.+|+.++|+ |..+++.|.++..+|+.++|...|+.|+.
T Consensus 52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777788899999999999999999999999999999999999999996 88889999999999999999999999999
Q ss_pred hC
Q 004984 541 LS 542 (721)
Q Consensus 541 L~ 542 (721)
..
T Consensus 132 ~~ 133 (157)
T PRK15363 132 IC 133 (157)
T ss_pred Hh
Confidence 87
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=2e-07 Score=114.30 Aligned_cols=280 Identities=10% Similarity=-0.019 Sum_probs=189.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-c------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-G------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GW 450 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~------~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-----~~ 450 (721)
..++.+....|++++|...+.+|.+. . + ......+|.++...|++++|...+.++++..+.. +.
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 45677778889999999999988654 1 1 1223456788899999999999999999864431 22
Q ss_pred HHHHHhh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C----
Q 004984 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL-----A---- 511 (721)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-----~---- 511 (721)
++...|. .|+.++|...+++|+++.... ..++.++|.++...|++++|...+++++.+-. .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3333332 356699999999999874432 34667899999999999999999999998622 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
...+..++.++...|++++|...+++++++...... .....+...++.+.....+++.| ..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A------------------~~ 633 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA------------------RR 633 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH------------------HH
Confidence 122345778888999999999999999997553211 01122333444444455555555 55
Q ss_pred HHHHHHHhCCCCh---hHHH----HHHHHHHHcCChHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhcCCHHHHHHH
Q 004984 592 VIYQMLESDAPKG---VLYF----RQSLLLLRLNCPEAAMRSLQLARQHAASDHER----LVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 592 ~~~qaL~l~P~~~---~~~~----~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea----~~~~G~~Ly~~G~~deAl~~ 660 (721)
.+++++.+.+... .... .....+...|..++|.+.+++.....+..... +.++|.++..+|++++|+..
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666665533221 1111 12345566899999999988876544333222 46899999999999999999
Q ss_pred HHHHHhcCCC------HH-HHHHHHHHhhccC
Q 004984 661 AEESIQMKRS------FE-AFFLKAYALADSS 685 (721)
Q Consensus 661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~ 685 (721)
++++++.... .. +..+.|.++.-.+
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 9999986211 11 4555566655444
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.9e-07 Score=107.07 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHH--HHHHHhC-----CHHHHHHHHHHHHhcCCC-------
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKG-----HKLWAYEKLNSVISSVTP------- 447 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg--~~~~~~G-----~~~~A~~~~~~aI~~~~~------- 447 (721)
+......+|..+...|++++|...|...|+.+|....++.| .+....+ +...-.+.|.+..+.+|.
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 34455778999999999999999999999998776644444 3332222 345556677666555542
Q ss_pred -----cHHHHHHH-------h--------------hcCCh------hHHHHHHHHHHhcC------------CCC--hHH
Q 004984 448 -----LGWMYQER-------S--------------LYCEG------DKRWEDLDKATALD------------PTL--SYP 481 (721)
Q Consensus 448 -----~~~ay~~r-------g--------------~~~~~------~eAl~d~~kAieLd------------P~~--~~a 481 (721)
.|..+..+ + .|.+. .+-+..|...++-+ |-. ..+
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT 196 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence 22222221 1 12211 11122333333221 111 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~ 560 (721)
|+.+|..|-..|++++|+..+++||+..|. ++.+..+|.++...|++++|...++.|.+||+.+.. .+...+...+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy-iNsK~aKy~L-- 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY-INSKCAKYLL-- 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH-HHHHHHHHHH--
Confidence 789999999999999999999999999997 888888999999999999999999999999999864 3333343332
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (721)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (721)
...+.++|.-.+.++.+ ++.+....+..|-- ..+...-|.++.+.|++..|+.-|....++--+
T Consensus 274 ---Ra~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc-----~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 274 ---RAGRIEEAEKTASLFTR----EDVDPLSNLNDMQC-----MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred ---HCCCHHHHHHHHHhhcC----CCCCcccCHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35778888877788877 33233444443322 245667788889999999999999888887554
No 121
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=1.9e-07 Score=98.24 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHH
Q 004984 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWM 451 (721)
Q Consensus 379 ~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~a 451 (721)
+-++..+..++|..|...|-|+.|+..|...++.+ -..|...+-.+|..-.++.+|++.-.+...+.+. .+..
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 45667888899999999999999999998887753 3446777888888888899998888877777552 4566
Q ss_pred HHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhc
Q 004984 452 YQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLAL 525 (721)
Q Consensus 452 y~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~l 525 (721)
|.+.+.- ...+.|+..+.||++-||+.+.|=+-+|.+.+..|+|+.|+..+.++++-||+ +..+..+..+|..+
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 6665432 23377888888999999999999999999999999999999999999988887 45566677888999
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 004984 526 EDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~ 545 (721)
|+.++.+..++++.+-.|+-
T Consensus 263 g~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 263 GKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred CCHHHHHHHHHHHHHccCCc
Confidence 99999999888888888774
No 122
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.8e-08 Score=100.56 Aligned_cols=196 Identities=15% Similarity=0.086 Sum_probs=130.2
Q ss_pred cHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 004984 448 LGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFF 522 (721)
Q Consensus 448 ~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~ 522 (721)
.+.++++||.+ |...-|.-||++++.+.|+.+.+++++|.-+...|+|+.|.+.|+-.+++||.. .+..|||..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34555666554 223667779999999999999999999999999999999999999999999985 4456799988
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC
Q 004984 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (721)
Q Consensus 523 ~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~ 602 (721)
.--|++.-|.+|+.+--.-||+++. |.--.. +-+..-+..+|. ....+|+-.++-.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLY----l~E~k~dP~~A~-----------------tnL~qR~~~~d~e 199 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF---RSLWLY----LNEQKLDPKQAK-----------------TNLKQRAEKSDKE 199 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH---HHHHHH----HHHhhCCHHHHH-----------------HHHHHHHHhccHh
Confidence 9999999999999999999999853 111111 111112222231 2233444433322
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFE 672 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~-------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~-~~~~ 672 (721)
. ..|+-.+.- +|... -...++++.+-..+ -+|.++++|-.+...|+.++|...|.=||+-+ =+|.
T Consensus 200 ~-WG~~iV~~y---LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfV 272 (297)
T COG4785 200 Q-WGWNIVEFY---LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFV 272 (297)
T ss_pred h-hhHHHHHHH---Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHH
Confidence 1 122222222 33322 11222333333333 36889999999999999999999999999863 3444
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=2.2e-08 Score=110.69 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=111.1
Q ss_pred hHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 462 DKRWEDLDKAT---ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 462 ~eAl~d~~kAi---eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
+.|+..|.+|+ ++||+++.||..++.+++..- ..|+.- ...+..+|++.-++|
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rA 330 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHH
Confidence 56666677777 777777777666666665330 001100 123345666667777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (721)
+++||++.. +....+.+.....+++.| .+.++||++++|+.+.+|+..|.++..-|
T Consensus 331 veld~~Da~------a~~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 331 SDITTVDGK------ILAIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred HhcCCCCHH------HHHHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 777777743 333333333333344444 66788888888888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 004984 619 CPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~A 664 (721)
+.++|++.+++|++++|.-.-|-...-|+ .|.....++|++.|-+-
T Consensus 387 ~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 387 KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 99999999999999999999999999999 99999999999988653
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=1.3e-08 Score=108.89 Aligned_cols=247 Identities=14% Similarity=0.089 Sum_probs=171.9
Q ss_pred HhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHH
Q 004984 394 LLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE 466 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~ 466 (721)
+-.|.|..++..++. .... .......+.|.+..+|++...+......- .|.+. +......| ...+.++.
T Consensus 12 fy~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEASL-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHHHH
Confidence 456788888876661 1222 23345678899999999988776654321 34432 22222222 23356666
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 467 DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 467 d~~kAieLdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
.++..+.-.. .++....--|.++...|++++|+..+.+. .+.++...+-.+++.++|.+.|..-++..-+.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6655443322 34455566778888899999999888775 34666666777999999999999999999999988
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
.. ..+ .|.+|+.++..- +.+. |.-+|+...+..|.++...+.++.+...+|+++||
T Consensus 164 ~~-------l~q-------------La~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 164 SI-------LTQ-------------LAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HH-------HHH-------------HHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HH-------HHH-------------HHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 52 222 377888888663 3344 68899998888899999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCH
Q 004984 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR-KAEESIQMKRSF 671 (721)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~-~ye~Ai~i~~~~ 671 (721)
.+.+.+|++.+|++++.+.|+..+-+.+|+-.++.. ...+.-...|+-
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999955554 444444467753
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.95 E-value=1.1e-08 Score=100.67 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCH
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------------CEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~--------------~deAl~~ye~Ai~i~~~~ 671 (721)
++++|.++.++|++++|+..+++|++..|++..++.++|+++..+|+ +++|++.+++++.++|+.
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34444444444444444444444444444444444444444444444 677777777777777775
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.94 E-value=1.3e-08 Score=116.82 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984 383 LLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g---~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~ 457 (721)
+..++.+|..+..++ .+..|+.+|++||+++|.++ +..++.++.....+. + . ..+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~-~-----~~~~ 399 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------P-L-----DEKQ 399 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------C-c-----cHHH
Confidence 344467777766543 47788888888888866554 444545443322111 0 0 0011
Q ss_pred cCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 458 YCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
...+.....+|+++ +|..+.+|.-+|.+....|++++|...++||++++|+...|..+|.++...|++++|+..|
T Consensus 400 ---l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 ---LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ---HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 14556666777775 8888899999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHhhCCCchhh
Q 004984 536 QAILTLSPDYRMF 548 (721)
Q Consensus 536 ~kal~L~P~~~~~ 548 (721)
++|+.++|.+..+
T Consensus 477 ~~A~~L~P~~pt~ 489 (517)
T PRK10153 477 STAFNLRPGENTL 489 (517)
T ss_pred HHHHhcCCCCchH
Confidence 9999999998543
No 127
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=1.7e-08 Score=98.95 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 495 VEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
+..+.+.+.+.+..++. ...++..|.++..+|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 44555555555544442 34456677778888888888888888888766531
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--
Q 004984 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-- 649 (721)
Q Consensus 572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly-- 649 (721)
..+.+|+++|.++..+|++++|+..+++|++++|.+++.+.++|.+++
T Consensus 70 ------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 70 ------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred ------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 112367888888899999999999999999999998888888888888
Q ss_pred -----hcCCHH-------HHHHHHHHHHhcCCC
Q 004984 650 -----DTSHCE-------EGLRKAEESIQMKRS 670 (721)
Q Consensus 650 -----~~G~~d-------eAl~~ye~Ai~i~~~ 670 (721)
.+|+++ +|+..|++++..+|.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 777766 445555556666664
No 128
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-08 Score=109.25 Aligned_cols=62 Identities=13% Similarity=-0.037 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
..+.+|+++.-+..++.|+...++=+.+.. ....+.|.+|..+-.+|..++|+-..++++.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999998888666654 35668899999999999999999999988875
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.4e-08 Score=90.37 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
..++.+|..+.+.|++++|+..|++++..+|+ +..++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 45566666666666666666666666666553 2344555666666666666666666666666554
No 130
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.92 E-value=3.3e-09 Score=116.98 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=84.5
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHH
Q 004984 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEA 673 (721)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea---~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~~~a 673 (721)
+.+|+++++|+|+|.+|..+|++++|+..|++|++++|+++++ ++|+|.+|..+|++++|++.+++||++ +|.|.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~- 147 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS- 147 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence 4689999999999999999999999999999999999999976 999999999999999999999999998 55443
Q ss_pred HHHHHHHhhccCCCCC-chhhHHHHHHHhhcC
Q 004984 674 FFLKAYALADSSQDSS-CSSTVVSLLEDALKC 704 (721)
Q Consensus 674 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 704 (721)
++..|..+||= .....-+|+|++-++
T Consensus 148 -----~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 -----TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 45677776543 233455566666554
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.92 E-value=1.3e-08 Score=121.49 Aligned_cols=155 Identities=7% Similarity=-0.087 Sum_probs=135.9
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (721)
Q Consensus 471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~ 549 (721)
+..-+|++..++..+..++...|++++|+...+.+++..|+ ...++..|.++...+++++|... .++.+-|.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence 44568999999999999999999999999999999999997 77788899999999998877776 666665554
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (721)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (721)
.+...+..+.+.+.-.|.+-.+++.+|.++.++|+.++|.+.|++
T Consensus 97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122235667777777899999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
+++++|+|+.+++|+|-.|-.. ++++|...|.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999986
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.1e-08 Score=90.75 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~ 592 (721)
+.++..|..+...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------------- 35 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----------------------------------------------- 35 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------------------------
Confidence 456778888889999999999999998888875
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
|..+.+++.+|.++.+.|++++|+..+++++...|++ +++++.+|+++..+|++++|+..++++++..|
T Consensus 36 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 36 --------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred --------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 1224567889999999999999999999999999886 67899999999999999999999999999999
Q ss_pred CHH
Q 004984 670 SFE 672 (721)
Q Consensus 670 ~~~ 672 (721)
+..
T Consensus 108 ~~~ 110 (119)
T TIGR02795 108 GSS 110 (119)
T ss_pred CCh
Confidence 876
No 133
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.90 E-value=2.1e-08 Score=92.77 Aligned_cols=87 Identities=24% Similarity=0.275 Sum_probs=79.1
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHhcCCHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L--ECLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~--~~~~~R~~~~~~lgd~eeAl~ 533 (721)
++.++|++-|.+||.+.|..+.+|+||+.++.-+|+.++|+.+++||+++.-+ . ..+.-||.+|..+|+.+.|.+
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44499999999999999999999999999999999999999999999999643 2 334569999999999999999
Q ss_pred HHHHHHhhCCCc
Q 004984 534 DVQAILTLSPDY 545 (721)
Q Consensus 534 d~~kal~L~P~~ 545 (721)
||++|.+|...+
T Consensus 137 DFe~AA~LGS~F 148 (175)
T KOG4555|consen 137 DFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHhCCHH
Confidence 999999999887
No 134
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.88 E-value=2e-09 Score=113.19 Aligned_cols=186 Identities=12% Similarity=-0.027 Sum_probs=144.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cC
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC 459 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~ 459 (721)
.-..|+-|+.+|.|+|||.+|.++|...| +-.+.++|.+|+++..+..|..+.+.||.++..+-.+|..|+. +|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999854 3346789999999999999999999999999988899988863 45
Q ss_pred ChhHHHHHHHHHHhcCCCChHHH-----------------------------------HHHHHHHHhcCCHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPY-----------------------------------MYRASSLMTKQNVEAALAEINR 504 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay-----------------------------------~~rg~~l~~lg~~~eAl~~~~k 504 (721)
...||..|++.+++|.|+.-+.- ..+|+.+...|.++-|+.++-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 66999999999999999974322 2344444555555555555555
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 505 AL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
-++-+-+...+-.-+..+.+..++++|+.+..+++-++|.++. +.|++-+....+.+.+....++.+
T Consensus 260 ~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 260 PRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred cccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 5543332221212246788999999999999999999999854 677888888888887777777666
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.87 E-value=3.6e-08 Score=97.05 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
+|..+.+|+++|.++...|++++|+..|++++++.|+ ...++++|.++..+|++++|+..|+++++++|++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 3455678899999999999999999999999998775 24577889999999999999999999999999874
No 136
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=5.8e-09 Score=85.55 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999863
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.86 E-value=1.3e-06 Score=83.36 Aligned_cols=238 Identities=25% Similarity=0.176 Sum_probs=165.9
Q ss_pred ccchHHHHHHHHHHHhccc----hhhHhhHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHhhc----CChhHHH
Q 004984 396 RKEYDEAEHLFEAAVNAGH----IYSIAGLARLGYIKGHKLWAYEKLNSVIS--SVTPLGWMYQERSLY----CEGDKRW 465 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--~~~~~~~ay~~rg~~----~~~~eAl 465 (721)
.+.+..+...+..++...+ .......+..+...|++..+...+...+. ..+..+..+...+.+ +.+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4566666667776666643 24555666777777777777777777776 566666666665542 2336788
Q ss_pred HHHHHHHhcCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 466 EDLDKATALDPTLSYPYMYRAS-SLMTKQNVEAALAEINRILGFKL---A-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~-~l~~lg~~~eAl~~~~kAL~l~P---~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..+.+++..+|+........+. ++...|++++|+..|.+++..+| . ......++..+...+++++|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8888888888887666666676 88889999999999999888776 2 23344455667888899999999999999
Q ss_pred hCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984 541 LSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (721)
Q Consensus 541 L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (721)
..|+. .. .....+........++. +...+.+++...|.....+...+..+...|.
T Consensus 196 ~~~~~~~~------~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 196 LNPDDDAE------ALLNLGLLYLKLGKYEE------------------ALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred hCcccchH------HHHHhhHHHHHcccHHH------------------HHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 88883 11 11111111111112222 3677888888888877788888888888888
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
.++|...+++++..+|. +...|+.+... .+++...+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~ 289 (291)
T COG0457 252 YEEALEALEKALELDPD----LYNLGLALLLL--LAEALELLEK 289 (291)
T ss_pred HHHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHhh
Confidence 99999999999999998 66677776666 5555544443
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=2.8e-07 Score=105.65 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
+.+|-.+..+|++++|+..+++||++.|+.+|.|...|-+|-..|++++|....+.|-.+++.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 444555555555555555555555555555555555555555555555555555555555443
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=5e-07 Score=99.72 Aligned_cols=132 Identities=20% Similarity=0.154 Sum_probs=90.5
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS 488 (721)
Q Consensus 413 ~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~ 488 (721)
....+.++.+..++..|++++|...++..|...|++.|.+.-++.+ ++..+|++-+.+|+.++|+..-.+.++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3445667777777878888888777777777777777776666643 455777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
|+..|++++|+..+++.+.-+|+ +..|..++.+|..+|+-.+|...+-....++-+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 77777777777777777777774 666666677777777666666554444444333
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5e-07 Score=92.42 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=154.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
.+.-.+.|+-...|-....+.+..|+..-|...+++.-.--|+ +.-...-|..+..+|.+++|+..|+..++-||.+..
T Consensus 42 ~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 42 SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 3333577777788888889999999999999999996654486 565566788999999999999999999999999855
Q ss_pred hhhhHHHH-HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984 548 FEGRVAAS-QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (721)
Q Consensus 548 ~~~~~~a~-~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (721)
.+-|.-+. ..+| ....++.-++.=|+..|++.++|...++++.-+|.++.|.=+
T Consensus 122 ~~KRKlAilka~G-------------------------K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 122 IRKRKLAILKAQG-------------------------KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred HHHHHHHHHHHcC-------------------------CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 44333221 1111 111236677777999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CHHHHH---HHHHHhhc
Q 004984 627 LQLARQHAASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKR-SFEAFF---LKAYALAD 683 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~---~deAl~~ye~Ai~i~~-~~~a~~---~~~~~~~~ 683 (721)
|+..+=++|.++--+--+|-++|.+|- ++-|...|++|+++.| ++-+.| +.|.+++-
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 5568899999999999 777664 78888873
No 141
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.82 E-value=3.8e-08 Score=105.72 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=170.4
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHH
Q 004984 366 VCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYE 436 (721)
Q Consensus 366 ~~LLe~Lv~~a~~~lq~~-la~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~~~~A~~~lg~~~~~~G~~~~A~~ 436 (721)
+.+|+.++....+.++-. -.|.++|++|+-.++|++|.++..-=|.+ +.+-+.-++|+..-.+|.+++|+-
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 456666666555555543 34568999999999999999876532221 445566789999999999999976
Q ss_pred HHHHHHhc-------------CCCcHHHHHHHhhcC----------ChhHHHHHHHHHHhcCCCC-------------hH
Q 004984 437 KLNSVISS-------------VTPLGWMYQERSLYC----------EGDKRWEDLDKATALDPTL-------------SY 480 (721)
Q Consensus 437 ~~~~aI~~-------------~~~~~~ay~~rg~~~----------~~~eAl~d~~kAieLdP~~-------------~~ 480 (721)
+..+-+.+ .-|+|.+|..+|+.. ..+++..+|+.|++.--.+ ..
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 65554432 225566666665431 1255555555555432222 46
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhh
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGR 551 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~--~~~~~~~ 551 (721)
+|.|+|+.|+-+|+|+.||..-..=|++.-.+ .++.+.|.+++-+|+++.|++.|.+.+.|.-. +... .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H
Confidence 78899999999999999999888877775432 23455678899999999999999988765422 1110 0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (721)
..-.+-++......+.+++|-.+-+..- -+-|-|+---+...++..+|+++-.+|.++.|+-...+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHL------------aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHL------------AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111222333333344444411100000 1223344445667888899999999999999988887777
Q ss_pred HhCC----C--ChhHHHHHHHHHHhcCC
Q 004984 632 QHAA----S--DHERLVYEGWILYDTSH 653 (721)
Q Consensus 632 ~l~P----~--~~ea~~~~G~~Ly~~G~ 653 (721)
++.- . .--+..|+...-..+|.
T Consensus 343 ~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 343 RSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 6532 2 22355666665555554
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.81 E-value=8.9e-08 Score=93.80 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~--~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
..+...+.+.+..++.. +..|++.|.++...|++++|+..|++|+.+.|+ +..+.+.|.++..+|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555565555677766 677799999999999999999999999998765 236788999999999999999999
Q ss_pred HHHHhhCCCchh
Q 004984 536 QAILTLSPDYRM 547 (721)
Q Consensus 536 ~kal~L~P~~~~ 547 (721)
+++++++|.+..
T Consensus 96 ~~Al~~~~~~~~ 107 (168)
T CHL00033 96 FQALERNPFLPQ 107 (168)
T ss_pred HHHHHhCcCcHH
Confidence 999999999844
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=5e-08 Score=81.52 Aligned_cols=93 Identities=25% Similarity=0.305 Sum_probs=75.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (721)
|..+...|++ ++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|. ...+...+.++...|+
T Consensus 7 a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDY---DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcH---HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3344444444 77777778888888888888899999999999999999999999998886 5667778888999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 004984 528 YQAALCDVQAILTLSPD 544 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~ 544 (721)
+++|...++++++++|+
T Consensus 84 ~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 84 YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999988874
No 144
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=4.9e-08 Score=96.46 Aligned_cols=100 Identities=25% Similarity=0.318 Sum_probs=79.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~ 501 (721)
|+-++..|++.+|...|..||+..|.... -.| +-.|.|||.+++.+++.+.||.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHHH
Confidence 55566777777777666666666665443 111 23689999999999999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 502 INRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 502 ~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
..|||+|+|.+ .++.-|+.+|.++..|++|+.||.++++++|...
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 99999999985 5556678999999999999999999999999973
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.2e-07 Score=100.54 Aligned_cols=217 Identities=17% Similarity=0.082 Sum_probs=140.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~ 500 (721)
+...|++++|....++.+..+|+...++.-. -+..++++|+...++=..+.-.+... +.+|.+.+++++.++|+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALK 100 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHH
Confidence 3344555555555555555555544444322 01112255542222211111122222 578889999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (721)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (721)
+++ .+++. ....++++.++.++|+|++|+.-|+..++=+-+......|.........+ .+
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--------~~-------- 161 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--------QV-------- 161 (652)
T ss_pred HHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh--------hH--------
Confidence 999 56775 45778999999999999999999999988776654322222211111100 00
Q ss_pred ccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCC--------hhHHHH
Q 004984 580 RWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASD--------HERLVY 643 (721)
Q Consensus 580 ~~~~~dd~~al~~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~--------~ea~~~ 643 (721)
...+..-.-|. +-+.+||.|-++.-.|.+.+|++.+++|+++ .-.+ .-..+.
T Consensus 162 ------------~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 162 ------------QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred ------------HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 01222223333 4568999999999999999999999999432 1111 225678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (721)
Q Consensus 644 ~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a 673 (721)
++.+|..+|+-+||.+.|..-|+.+|-.+.
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 899999999999999999999999887663
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=6.4e-08 Score=103.14 Aligned_cols=206 Identities=17% Similarity=0.096 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc----cc----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------c
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----GH----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------L 448 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~ 448 (721)
...|..-|..+...|++++|..+|.+|.+. +. ..++...+.+ ++.+++.+|+..|.+|+.++.. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445566789999999999999999998766 11 2233444444 4566999999999999997432 2
Q ss_pred HHHHHHHhhc-----CChhHHHHHHHHHHhcCCC--C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 004984 449 GWMYQERSLY-----CEGDKRWEDLDKATALDPT--L----SYPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (721)
Q Consensus 449 ~~ay~~rg~~-----~~~~eAl~d~~kAieLdP~--~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~------ 511 (721)
+..+.+.|.+ ++.++|++.|.+|+++--. . ...+.+.|.++..+|+|++|+..|++++....+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3444444432 4559999999999998322 2 456788999999999999999999999975321
Q ss_pred -HHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-
Q 004984 512 -LECLE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG- 588 (721)
Q Consensus 512 -~~~~~-~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~- 588 (721)
...++ ..+.+++.+||...|...+++....+|.+....-...+..+...+ +. .+.+.+.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-----------------~~-~D~e~f~~ 255 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-----------------EE-GDVEAFTE 255 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-----------------HT-T-CCCHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-----------------Hh-CCHHHHHH
Confidence 11233 345689999999999999999999999985422112222222211 11 1112222
Q ss_pred hHHHHHHHHHhCCCChhHH
Q 004984 589 SLSVIYQMLESDAPKGVLY 607 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~ 607 (721)
++..|++.-.+|||....+
T Consensus 256 av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 256 AVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HCHHHTTSS---HHHHHHH
T ss_pred HHHHHcccCccHHHHHHHH
Confidence 4667788888888766544
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=2.9e-07 Score=105.21 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHhh--c-
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSL--Y- 458 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-~~~ay~~rg~--~- 458 (721)
...+.+.-.+|...|+-..|.....+-|+. +.++ +.|..+||...=-..|++|.++... ++.|....|. +
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~-----~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~ 497 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDP-----RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc-----hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccccc
Confidence 344556677788888889998888787874 3332 3467778877777888888887442 3443322221 1
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
..+.++..+++..++++|-....|+++|.+..++++++.|..+|.+.+.++|+ ..+|+|...+|.++|+..+|-+.+.
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 23399999999999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
.|++-+=++ -....+-+.+...+..|++|
T Consensus 578 EAlKcn~~~------w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 578 EALKCNYQH------WQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHhhcCCCC------CeeeechhhhhhhcccHHHH
Confidence 999998444 12333344555566677777
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.4e-07 Score=102.38 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=90.2
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (721)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA 498 (721)
-..|+.+++.|++..|...|.+|+..-......=.+- ..... ++. ...+.|++.++..+++|.+|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee------~~~~~----~~k-----~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE------QKKAE----ALK-----LACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH------HHHHH----HHH-----HHHhhHHHHHHHhhhhHHHH
Confidence 3468899999999999999999998643100000000 11111 111 24789999999999999999
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 499 LAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
+...+++|+++|+ ..+++-||.++..+|+|+.|+.||++|++++|+|.+
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999995 788999999999999999999999999999999943
No 149
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=1.1e-06 Score=97.18 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
..-+.+++.++|..+.++.++|.+|.++|++++|++.+++.+.-+|++++.+.+++..+-.+|+..+|...+-+...+.-
T Consensus 360 ~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 34455555555556677888888888888888888888888888888888888888888888888888888888777766
Q ss_pred CHH
Q 004984 670 SFE 672 (721)
Q Consensus 670 ~~~ 672 (721)
..+
T Consensus 440 ~~~ 442 (484)
T COG4783 440 RLE 442 (484)
T ss_pred CHH
Confidence 665
No 150
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.74 E-value=2.4e-05 Score=84.76 Aligned_cols=261 Identities=17% Similarity=0.128 Sum_probs=177.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHhhcCChhHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcC
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQ 493 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~-------~ay~~rg~~~~~~eAl~d~~kAieLdP~~-~~ay~~rg~~l~~lg 493 (721)
|.....-|++..|.+...++-+-.+.-. .|-.+||++ +.|=..+.+|.++.|+. ...+..|+-++...|
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~---~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE---DRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH---HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 3445667999999999998777655433 333444444 88888999999994444 457888999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC-chhhhhhHHHHHHHHHHHHhhhhh
Q 004984 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS---PD-YRMFEGRVAASQLHMLVREHIDNW 568 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~---P~-~~~~~~~~~a~~~~~~l~~~~~~~ 568 (721)
+++.|.+..+.+++..|. +..+.....+|...|+|.+...-..+.-+-. +. +..+.. .+ ..+.+++....-
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a---~~glL~q~~~~~ 243 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QA---WEGLLQQARDDN 243 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HH---HHHHHHHHhccc
Confidence 999999999999999996 7767777789999999999998877776633 22 111111 11 111111111111
Q ss_pred hHH---HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984 569 TIA---DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (721)
Q Consensus 569 ~~A---~~~~~l~~~~~~--------------~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (721)
... ++|.++-.+... .++.. |...+.++|...= ++.++-. .--.+.++++.=+...++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~L~~~--~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPRLCRL--IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-ChhHHHH--HhhcCCCCchHHHHHHHHH
Confidence 111 123322222222 13332 4445555555432 2222211 1223456666677777888
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhh
Q 004984 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (721)
Q Consensus 631 l~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~ 693 (721)
+...|+++..+.++|..+++.+.+.+|=..+|.|++.+||-+.|...|++++-.+ ||+-+.-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g-~~~~A~~ 382 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG-EPEEAEQ 382 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC-ChHHHHH
Confidence 8889999999999999999999999999999999999999999999999987554 4444443
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.72 E-value=1.6e-06 Score=90.48 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhcCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCC-------
Q 004984 462 DKRWEDLDKATALDPTLSYPY---MYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALED------- 527 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay---~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd------- 527 (721)
++|+..|++++...|+...+. ..+|.++..++++++|+..|++.|++.|+ +.+++.+|.++..+++
T Consensus 49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~ 128 (243)
T PRK10866 49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFF 128 (243)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhcc
Confidence 344444444555555544333 78899999999999999999999999885 3456778877655541
Q ss_pred -----------HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 528 -----------YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 528 -----------~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
..+|+..|++.++.-|+.... ..+......++..+..
T Consensus 129 ~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---~~A~~rl~~l~~~la~----------------------------- 176 (243)
T PRK10866 129 GVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---TDATKRLVFLKDRLAK----------------------------- 176 (243)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHCcCChhH---HHHHHHHHHHHHHHHH-----------------------------
Confidence 357889999999999986321 1122221111111111
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
--+..|..+.+.|.+..|+.-++..++.-|+ ..+|++.++.++..+|.-++|-+..
T Consensus 177 ---------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 177 ---------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred ---------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1234566778889999999999999999886 5688999999999999999987543
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.3e-06 Score=89.35 Aligned_cols=210 Identities=16% Similarity=0.081 Sum_probs=143.7
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHH-hhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH
Q 004984 351 LSEVAMNLDPRSDKTVCFLERLLE-SAETDR--QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI 427 (721)
Q Consensus 351 l~wV~~d~~~rs~~~~~LLe~Lv~-~a~~~l--q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~ 427 (721)
-.|-+. ...+++..+++.+.... ....-+ .....+.+.-.+.+..|+.+-|+.++++.-..-|..- ||...
T Consensus 18 ~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~l 91 (289)
T KOG3060|consen 18 RKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKL 91 (289)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHH
Confidence 366433 34467777777766432 211101 1134456677778888888889888887433322211 11111
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (721)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~ 507 (721)
.|- -+...|.+ ++|++.|+..++-||++.-+|...-.++..+|+.-+||..++.-++
T Consensus 92 kam--------------------~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 92 KAM--------------------LLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HHH--------------------HHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 12222334 8888888999999999999999988899999999999999999998
Q ss_pred cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 004984 508 FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (721)
Q Consensus 508 l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 585 (721)
.=| |.++|...+-+|...|+|+.|.-+|+..+-++|-+.++++|.+ ..+-.+. ++..+.|
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~a-------------- 210 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELA-------------- 210 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHH--------------
Confidence 777 5899999999999999999999999999999999988776655 2222221 2333333
Q ss_pred ccchHHHHHHHHHhCCCChhHHHHHH
Q 004984 586 DIGSLSVIYQMLESDAPKGVLYFRQS 611 (721)
Q Consensus 586 d~~al~~~~qaL~l~P~~~~~~~~~g 611 (721)
...|.|+|.++|.+.+++|..-
T Consensus 211 ----rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 ----RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred ----HHHHHHHHHhChHhHHHHHHHH
Confidence 6689999999998888776543
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=2e-07 Score=77.87 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
|+..++++++..|.+..+++.+|.++...|++++|+..++++++..|.+.+++..+|.++...|++++|...+++++.+.
T Consensus 19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004984 669 RS 670 (721)
Q Consensus 669 ~~ 670 (721)
|+
T Consensus 99 ~~ 100 (100)
T cd00189 99 PN 100 (100)
T ss_pred CC
Confidence 74
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.69 E-value=4.4e-08 Score=108.22 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=64.0
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLALEDYQAALCDVQAILTL-SPDY 545 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~lgd~eeAl~d~~kal~L-~P~~ 545 (721)
+-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+ .|+++|++|..+|++++|+.++++|+++ +|.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 368999999999999999999999999999999999997 43 3889999999999999999999999998 4444
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=8.8e-08 Score=78.49 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
+.+|.++++.|++++|+..|+++++.+|+ ++.++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35788888888888888888888888886 6777888888888888888888888888888876
No 156
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.4e-07 Score=93.19 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-L-----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~-----~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
...=|+-+..-|.|++|...|..||++-|. + -++.+||.++++++.++.||.++.+||+|+|.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----------
Confidence 455688888999999999999999999885 2 346789999999999999999999999999997
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
.+||. +|+.++.++-.+++|+.+|.+.++++|
T Consensus 168 --------------------------------------~kAl~----------RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 168 --------------------------------------EKALE----------RRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred --------------------------------------HHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 22333 577788888888888888888888888
Q ss_pred CChhHHH
Q 004984 636 SDHERLV 642 (721)
Q Consensus 636 ~~~ea~~ 642 (721)
...+|.-
T Consensus 200 s~~ear~ 206 (271)
T KOG4234|consen 200 SRREARE 206 (271)
T ss_pred chHHHHH
Confidence 8776643
No 157
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.4e-06 Score=87.40 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=109.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA 497 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e 497 (721)
|..|...|=..-|.-+|+++++++|+.+.++.-.|.| +.++.|++.|+..++|||++-++..|||..+.--||++-
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 3333344444444444444444444444444444432 333666777888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHh
Q 004984 498 ALAEINRILGFKLALECLELRFCFFLALEDYQAALCD-VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (721)
Q Consensus 498 Al~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d-~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~ 576 (721)
|..+|.+--+-||+...-...-.+-...-|..+|... .+++-.++.++ .|-..+-..++.+..
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~---WG~~iV~~yLgkiS~------------- 215 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQ---WGWNIVEFYLGKISE------------- 215 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhh---hhHHHHHHHHhhccH-------------
Confidence 9999999998898622111122233333445555444 34444454333 111111111111110
Q ss_pred hhhccccccccchHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984 577 LYDRWSSVDDIGSLSVIYQMLESDAP-------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (721)
Q Consensus 577 l~~~~~~~dd~~al~~~~qaL~l~P~-------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (721)
-+.+.++.+-.-+ -.++||.+|.-...+|...+|...|..|+.-+--
T Consensus 216 -------------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 216 -------------ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred -------------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 0112222222211 2467999999999999999999999999987643
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5e-07 Score=98.07 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~ 461 (721)
+......|..+++.|+|..|...|++|+.. ++.... +.++.-..-.--+..+.|++..|.....|
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~~~k~~~~lNlA~c~lKl~~~--- 273 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAEALKLACHLNLAACYLKLKEY--- 273 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHHHHHHHHhhHHHHHHHhhhhH---
Confidence 444567899999999999999999999886 322110 00111111111234566778888888777
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHH-HHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAA-LCDVQAIL 539 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~eeA-l~d~~kal 539 (721)
.+|+...+++++++|+|.-|.+.||.++..+|.|+.|+.+|+||++++|+..+..+ ...+..+..++++. ..-|.+.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999997544333 34444444455444 55566666
Q ss_pred hhCC
Q 004984 540 TLSP 543 (721)
Q Consensus 540 ~L~P 543 (721)
..-+
T Consensus 354 ~k~~ 357 (397)
T KOG0543|consen 354 AKLA 357 (397)
T ss_pred hccc
Confidence 6444
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.61 E-value=1.6e-06 Score=92.46 Aligned_cols=211 Identities=17% Similarity=0.119 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCC
Q 004984 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP 476 (721)
.+|++|...|++| |+.+...|++.+|.+.|.++...+-..+.. .+|
T Consensus 29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~----------~~A------------ 74 (282)
T PF14938_consen 29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK----------FEA------------ 74 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H----------HHH------------
T ss_pred CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH----------HHH------------
Confidence 3788888888876 445777788888888887776654211111 122
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhh
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFK-----LA--LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMF 548 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-----P~--~~~~~~R~~~~~~l-gd~eeAl~d~~kal~L~P~~~~~ 548 (721)
+.+|..-|.++.+. ++++|+..|++|+.+- |. ..++...|.+|... |++++|+..|++|+++--....
T Consensus 75 --a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~- 150 (282)
T PF14938_consen 75 --AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS- 150 (282)
T ss_dssp --HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred --HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence 23444555566555 8888888888888761 21 23345567788888 9999999999999986322100
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (721)
...+ ...+.+.|.++.++|++++|+..|+
T Consensus 151 -------------------~~~a--------------------------------~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 151 -------------------PHSA--------------------------------AECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp -------------------HHHH--------------------------------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------------hhhH--------------------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0000 1234567788999999999999999
Q ss_pred HHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHhhccCCCCCchhhHHH
Q 004984 629 LARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE----AFFLKAYALADSSQDSSCSSTVVS 696 (721)
Q Consensus 629 ~Al~l~P~~-------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~ 696 (721)
+.....-++ .+.+..-+.|.+.+|+.-.|...+++...++|+|. .-|+....-|=.+-|++.-+.+|.
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998754322 23456788999999999999999999999999664 667777776666667776665543
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.58 E-value=1.4e-06 Score=83.46 Aligned_cols=111 Identities=21% Similarity=0.134 Sum_probs=74.8
Q ss_pred hCCHHHHHHHHHHHHhcCCCc---HHHHHHHhh----cCChhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHH
Q 004984 428 KGHKLWAYEKLNSVISSVTPL---GWMYQERSL----YCEGDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEA 497 (721)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~~~~---~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~---~~ay~~rg~~l~~lg~~~e 497 (721)
.|+...+...+.+.+..+|+. ..+.+..+. -++.++|+..|+++++-.|+. ..+..++|.+++.+|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444445555555443 122222221 133366677777777766555 4578889999999999999
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 498 ALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 498 Al~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
|+..++.+- -.+ .+..+..+|.++..+|++++|+..|++||
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999997733 222 35566789999999999999999999985
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.57 E-value=1.3e-07 Score=81.77 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A 664 (721)
|+..++++++.+|. +...++++|.++.++|++++|+..+++ ..++|.+.+.++..|.+++.+|+++||+..+++|
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 48899999999995 577899999999999999999999999 9999999999999999999999999999999986
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=1.6e-07 Score=81.29 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~--~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
+.+++|+..|+++++.+|+ +...++++|.++.++|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3449999999999999996 466788899999999999999999999 888886 577788899999999999999999
Q ss_pred HHH
Q 004984 536 QAI 538 (721)
Q Consensus 536 ~ka 538 (721)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=6.2e-06 Score=86.14 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~~ 454 (721)
....|..|......|+|++|+..|++++...| ..+...+|.++++.|++.+|+..+++.|+.+|+ .+.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 45577888899999999999999999988843 224577899999999999999999999999875 5778888
Q ss_pred HhhcC-------------------C---hhHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHhcCCH
Q 004984 455 RSLYC-------------------E---GDKRWEDLDKATALDPTLSY-----------------PYMYRASSLMTKQNV 495 (721)
Q Consensus 455 rg~~~-------------------~---~~eAl~d~~kAieLdP~~~~-----------------ay~~rg~~l~~lg~~ 495 (721)
+|... + ..+|+..|++.|+.-|+... --+..|.-|.+.|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 87531 0 15788889999999998742 223455556666777
Q ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 496 EAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
..|+.-++.+|+--|+ .++++....+|..+|..++|...
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7777777777766664 34455556666677766666543
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.51 E-value=1.6e-06 Score=91.48 Aligned_cols=107 Identities=8% Similarity=-0.028 Sum_probs=74.6
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984 479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (721)
Q Consensus 479 ~~ay~~rg~~l-~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~ 553 (721)
...++..|..+ +..|+|++|+..|++.|+..|+ +..++.+|.+|...|++++|+..|+++++..|+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-------- 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-------- 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 35555555554 5567777777777777777775 2456667777777777777777777777777775
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
|..+++++.+|.++..+|+.++|...|+++++.
T Consensus 214 -----------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 -----------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566666777777777777777777777777
Q ss_pred CCCChhH
Q 004984 634 AASDHER 640 (721)
Q Consensus 634 ~P~~~ea 640 (721)
.|++..+
T Consensus 247 yP~s~~a 253 (263)
T PRK10803 247 YPGTDGA 253 (263)
T ss_pred CcCCHHH
Confidence 7776654
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.50 E-value=1.5e-06 Score=80.93 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~ 592 (721)
..++.+++++..+|+.++|+..|+++++..++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 3467788888888888888888888888765531
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
.-..+++.+|.++..+|++++|++.++++++-.|+ +......++.+|+..|+.+||++.+-+++.
T Consensus 36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01234566777888888888888888888888777 777778888888888888888887777765
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.47 E-value=1.4e-05 Score=81.02 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=110.5
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (721)
Q Consensus 416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~ 495 (721)
.+++..|...+..|++.+|+..|++.+..+|+... -..+...+|.++...|++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---------------------------a~~A~l~la~a~y~~~~y 58 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---------------------------APQAQLMLAYAYYKQGDY 58 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---------------------------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---------------------------HHHHHHHHHHHHHHcCCH
Confidence 34455555666666666666666655555553221 134567788888888888
Q ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984 496 EAALAEINRILGFKLA----LECLELRFCFFLAL-----------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (721)
Q Consensus 496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~l-----------gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~ 560 (721)
++|+..|++-|...|+ +.+++.+|.++..+ +...+|+..|+..++.-|+.... ..+......
T Consensus 59 ~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~---~~A~~~l~~ 135 (203)
T PF13525_consen 59 EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA---EEAKKRLAE 135 (203)
T ss_dssp HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH---HHHHHHHHH
Confidence 8888888888888885 34566677665443 33458899999999999986321 111121111
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--
Q 004984 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-- 638 (721)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-- 638 (721)
+ +..|+ .--+..|..+.+.|.+.+|+.-++.+++.-|+..
T Consensus 136 l--------------------------------~~~la------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 136 L--------------------------------RNRLA------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp H--------------------------------HHHHH------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred H--------------------------------HHHHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence 1 11111 1123467788889999999999999999999854
Q ss_pred -hHHHHHHHHHHhcCCHHHH
Q 004984 639 -ERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 639 -ea~~~~G~~Ly~~G~~deA 657 (721)
+|+..++..++.+|..+.|
T Consensus 178 ~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 178 EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCChHHH
Confidence 6788889999999998844
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.47 E-value=1.4e-05 Score=81.10 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQ 453 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~ 453 (721)
...++|..|...+..|+|.+|+..|++.+..-| ..|...+|.+++..|++..|+..+++.|..+|+ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 356788999999999999999999999988732 446788999999999999999999999999886 456777
Q ss_pred HHhhcC---------------ChhHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 004984 454 ERSLYC---------------EGDKRWEDLDKATALDPTLSYP-----------------YMYRASSLMTKQNVEAALAE 501 (721)
Q Consensus 454 ~rg~~~---------------~~~eAl~d~~kAieLdP~~~~a-----------------y~~rg~~l~~lg~~~eAl~~ 501 (721)
.+|... ...+|+..|++.|+.-|+...+ -+..|..|.+.|++..|+.-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 766420 1157788888888888887533 23456667777777777777
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHhcCCHH
Q 004984 502 INRILGFKLAL----ECLELRFCFFLALEDYQ 529 (721)
Q Consensus 502 ~~kAL~l~P~~----~~~~~R~~~~~~lgd~e 529 (721)
++.+|+--|+. +++......+.++|..+
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 77777766652 33344555677777666
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.2e-06 Score=88.98 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++-+.-++.-+.-||+++.-|.-+|-+|+.+|++..|...|.+|+++.|+ ++.+-..+.++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-------------- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-------------- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence 66677788888888888888888888888888888888888888888885 564433333221110
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
++.. ...+-..++++|.+||.+..+.+.+|......|++
T Consensus 205 -~~~~----------------------------------------ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 205 -GQQM----------------------------------------TAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred -CCcc----------------------------------------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 1111 11123356777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCChhH
Q 004984 621 EAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea 640 (721)
++|....+.-+.+.|.+...
T Consensus 244 ~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 244 AEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHhcCCCCCch
Confidence 77777777777777765543
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.45 E-value=7.4e-07 Score=74.46 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
..++...+++++|+..+++++.++|+++..+..+|.+++.+|++++|+..+++++++.|+.. +-.+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999877 555544
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=5.2e-06 Score=79.45 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=91.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984 491 TKQNVEAALAEINRILGFKLAL-E---CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (721)
Q Consensus 491 ~lg~~~eAl~~~~kAL~l~P~~-~---~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (721)
..++...+...+++.+.-.|+. . ....++..+...|++++|+..|++++.-.|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5778888888888888888852 2 2234667888889999999999998887766411
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (721)
.+.+++++|.++..+|.+++|+..++. +.-.+-.+.++..+|.
T Consensus 84 ------------------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 84 ------------------------------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 123466778888888999999988866 4555667788888999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 004984 647 ILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 647 ~Ly~~G~~deAl~~ye~Ai 665 (721)
++...|++++|.+.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998885
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.44 E-value=3.1e-06 Score=89.35 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=92.2
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984 511 ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (721)
Q Consensus 511 ~~~~~~~R~~~-~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a 589 (721)
+...++..+.. ..+.|+|++|+..|++.++..|+..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------------------------------------- 177 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------------------------------------- 177 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------------------------------------------
Confidence 34455666654 3667999999999999999999862
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
-.+.+++.+|.++...|++++|+..|++++...|+ .+++++.+|.++..+|++++|...|++.++
T Consensus 178 ------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 178 ------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11356788999999999999999999999999888 689999999999999999999999999999
Q ss_pred cCCCHH
Q 004984 667 MKRSFE 672 (721)
Q Consensus 667 i~~~~~ 672 (721)
.-|+.+
T Consensus 246 ~yP~s~ 251 (263)
T PRK10803 246 KYPGTD 251 (263)
T ss_pred HCcCCH
Confidence 999987
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=7.5e-07 Score=74.42 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=35.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (721)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~ 511 (721)
+|.+++++ ++|++.++++++++|+++.+|..+|.++..+|++++|+.+|+++++..|+
T Consensus 4 ~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDY---EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCH---HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 44444444 66666666666666666666666666666666666666666666666664
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.41 E-value=7.8e-07 Score=73.26 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
|...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999976 666654
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=6.2e-06 Score=76.77 Aligned_cols=99 Identities=22% Similarity=0.123 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
+.+.+++|.++-.+|+.++|+..|++|++..++ ...+..+|..+..+|++++|+..+++++.-.|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~--------- 71 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD--------- 71 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence 357889999999999999999999999997654 3455668889999999999999999999888874
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
+.+..+....+.+|..+|+++||++.+-.++.
T Consensus 72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333444577789999999999999988775
No 175
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=6.5e-07 Score=87.74 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC---
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--- 527 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd--- 527 (721)
+.|.+.++.+...||.+++++++.|.+|.++.+ +++|+.-|+.||.++|+ .+++++.|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 556666667777777777777777777766633 35566667777777775 5666666655444433
Q ss_pred --------HHHHHHHHHHHHhhCCCchh
Q 004984 528 --------YQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 528 --------~eeAl~d~~kal~L~P~~~~ 547 (721)
|++|...|++|...+|++..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 78888899999999999844
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.2e-06 Score=88.09 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
..|...|.+|++|.|++++.+...|.+++.... -.+|...|++||++||+ ....+..+..+.+.|||.+|+..+++
T Consensus 173 ~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 173 SDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 555555555555555555555555555543322 34555555555555553 44455555555555555555555555
Q ss_pred HHhhCCCc
Q 004984 538 ILTLSPDY 545 (721)
Q Consensus 538 al~L~P~~ 545 (721)
.+.+.|.+
T Consensus 253 lL~~lp~~ 260 (287)
T COG4235 253 LLDLLPAD 260 (287)
T ss_pred HHhcCCCC
Confidence 55555554
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.34 E-value=1.4e-06 Score=85.43 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC------
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH------ 653 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~------ 653 (721)
...++.....+|.+++.++|-|.+|+.| ...++|+.-|+.||.++|+.++|++++|.++..+|.
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~ 90 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA 90 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence 4567788999999999999999999986 345789999999999999999999999999998865
Q ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984 654 -----CEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (721)
Q Consensus 654 -----~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (721)
|++|...|++|..++|+++.|. |+.-+++
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~ 124 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 8999999999999999999875 4544443
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00047 Score=73.71 Aligned_cols=280 Identities=12% Similarity=0.040 Sum_probs=175.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------------c-------
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------------S------- 444 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--------------~------- 444 (721)
.+|.+++..|+|++|...|+.+.+.+ +.....++|.+++-+|.+.+|-....++-. +
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 46778888999999999999888774 444567788899999999988665543321 1
Q ss_pred ------------CCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 445 ------------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL 512 (721)
Q Consensus 445 ------------~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~ 512 (721)
.-.++.+.+.|..| +|||+.|.+++.-+|++...-.++|..|..+.-|+-+-+.+.--+.--|+.
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 12356777777777 999999999999999999888899999999988887777666666655652
Q ss_pred -HHHHHHHH------------------------------------------------------------------HHHhc
Q 004984 513 -ECLELRFC------------------------------------------------------------------FFLAL 525 (721)
Q Consensus 513 -~~~~~R~~------------------------------------------------------------------~~~~l 525 (721)
.+.++.+. -|..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence 22222111 06677
Q ss_pred CCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cc----------------c
Q 004984 526 EDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DD----------------I 587 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-dd----------------~ 587 (721)
+|..+|+..+. .++|.-+. |+.++-+....|.--.-.+....|+-+.++--.-... |. +
T Consensus 299 ~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 299 NDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred ccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 77777776544 46776532 4433332222221111122222232222221110000 10 1
Q ss_pred c-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 588 G-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 588 ~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
+ .+..++-.-+-.-++.++.+|.+-+...-|.+.||.+.+-+.-.-+ .+..--.-.++-|+...|+-+-||..+ +
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---l 452 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---L 452 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---H
Confidence 1 1333444444567788889999999999999999999886654333 112222233556788889988888776 4
Q ss_pred hcCCCHHHHHH
Q 004984 666 QMKRSFEAFFL 676 (721)
Q Consensus 666 ~i~~~~~a~~~ 676 (721)
..+-+-++|-|
T Consensus 453 k~~t~~e~fsL 463 (557)
T KOG3785|consen 453 KTNTPSERFSL 463 (557)
T ss_pred hcCCchhHHHH
Confidence 45555556554
No 179
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.33 E-value=7.1e-07 Score=98.55 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
..+.|+.-|.|||+|+|+.+..|-+|+.++...+.+.+|+.|+++||+++|. ..+|+.||.++.+++++.+|+.+|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 4488889999999999999999999999999999999999999999999997 566677889999999999999999999
Q ss_pred HhhCCCchh
Q 004984 539 LTLSPDYRM 547 (721)
Q Consensus 539 l~L~P~~~~ 547 (721)
..+.|+...
T Consensus 99 ~~l~Pnd~~ 107 (476)
T KOG0376|consen 99 KKLAPNDPD 107 (476)
T ss_pred hhcCcCcHH
Confidence 999999853
No 180
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00075 Score=76.44 Aligned_cols=284 Identities=11% Similarity=-0.003 Sum_probs=177.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~ 466 (721)
+..+-+..+.++.++|+..++ -++..+.......|-+.|++|++++|+..|...++-+.+.-..-...+.. ....++.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVAAALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhhh
Confidence 566778888999999999998 33334444667788899999999999999999888776554444333322 0012222
Q ss_pred -HHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCHHH--------HHHHHHHHHhcCCH
Q 004984 467 -DLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLALEC--------LELRFCFFLALEDY 528 (721)
Q Consensus 467 -d~~kAieLdP~-~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--------~P~~~~--------~~~R~~~~~~lgd~ 528 (721)
+..+.+-..|+ ..+-++|+|-++.+.|+|.+|++.+.+|+.+ +-+.+. ..-.++++..+|+-
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 14566777776 5678999999999999999999999999433 111111 12256789999999
Q ss_pred HHHHHHHHHHHhhCCCchhh----hhhHHHHHH-------HHHHHHhhhhhhHHHHHHhhhhccc--cccccc-------
Q 004984 529 QAALCDVQAILTLSPDYRMF----EGRVAASQL-------HMLVREHIDNWTIADCWLQLYDRWS--SVDDIG------- 588 (721)
Q Consensus 529 eeAl~d~~kal~L~P~~~~~----~~~~~a~~~-------~~~l~~~~~~~~~A~~~~~l~~~~~--~~dd~~------- 588 (721)
++|..-|...+..+|-+..+ .+...+... -.+..........++.|.+-...-+ ..-+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987431 111110000 0000000111111111211111100 000000
Q ss_pred -hHHHHHHHHHhCCC-ChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 589 -SLSVIYQMLESDAP-KGVLYF---RQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAE 662 (721)
Q Consensus 589 -al~~~~qaL~l~P~-~~~~~~---~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly~~G~~deAl~~ye 662 (721)
.-...++-...-|. .+...+ .+...+.+-..+..|...+..-.+-.|.+ .....-+..+...+|+++.|+..++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 01122333333333 333322 33444444557888999999999999988 7888899999999999999999999
Q ss_pred --------HHHhcCCCHH
Q 004984 663 --------ESIQMKRSFE 672 (721)
Q Consensus 663 --------~Ai~i~~~~~ 672 (721)
...+++.+.+
T Consensus 401 ~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHhhhhhhhhhhhccChh
Confidence 5555555444
No 181
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=3.5e-07 Score=97.04 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
.++|++.|.+||+++|..+..|.+||.+++.+++...||.+++.||+++|+ ..-+-.|+.+...+|++++|-.|++.|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 388999999999999999999999999999999999999999999999998 4555678999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (721)
+++=+-.....-..+....+.++.+...++.+.
T Consensus 210 kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 210 KLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred hccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 988664322222334455555566665555554
No 182
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.26 E-value=2.4e-05 Score=83.86 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=124.1
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHH--Hhhc
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQE--RSLY 458 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~--rg~~ 458 (721)
....|.++...|++++|++.+.+. ++..+..-.--++.+.|+++.|.+.+.+.-+.+.+ ++.+|.+ .|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~- 180 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG- 180 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence 345678888899999998877654 44555555556899999999999999888777664 4444544 453
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY-QAALCDVQ 536 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~-eeAl~d~~ 536 (721)
..+++|.-.|+...+-.|..+..++.+|.+++.+|+++||...+..|++.+|+ ++.+.|+..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34599999999988888889999999999999999999999999999999997 88889999999999998 66777888
Q ss_pred HHHhhCCCchh
Q 004984 537 AILTLSPDYRM 547 (721)
Q Consensus 537 kal~L~P~~~~ 547 (721)
+.-..+|++..
T Consensus 261 qL~~~~p~h~~ 271 (290)
T PF04733_consen 261 QLKQSNPNHPL 271 (290)
T ss_dssp HCHHHTTTSHH
T ss_pred HHHHhCCCChH
Confidence 88889999853
No 183
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.25 E-value=1e-06 Score=101.18 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeC----------CCCCCHHHHHHHhhhhccCC
Q 004984 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGS 246 (721)
Q Consensus 177 ~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~----------~~~is~~~~~~lL~f~Ytg~ 246 (721)
....+.||||.||++.|++||.||+++|++|+.+|.....-+....|.+. -++|.|..|+.+|+|+||++
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 34457899999999999999999999999999999876544433333333 23699999999999999996
Q ss_pred C
Q 004984 247 L 247 (721)
Q Consensus 247 l 247 (721)
+
T Consensus 634 ~ 634 (1267)
T KOG0783|consen 634 L 634 (1267)
T ss_pred c
Confidence 4
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=9.5e-07 Score=74.97 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
|.-+.+++++|.++..+|++++|+..|++|+++. |.-+..++++|++++.+|++++|++.+++|++|.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4446789999999999999999999999999763 2346789999999999999999999999999873
No 185
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.23 E-value=5.8e-06 Score=76.87 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~~G~~deAl~~ye~A 664 (721)
|+.-|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+- ..+++.+|.++-.+|+-|.|-..|+.|
T Consensus 62 AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 62 ALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 7899999999999999999999999999999999999999999998764 468999999999999999999999999
Q ss_pred HhcCCCHH
Q 004984 665 IQMKRSFE 672 (721)
Q Consensus 665 i~i~~~~~ 672 (721)
-.+-.+|+
T Consensus 142 A~LGS~FA 149 (175)
T KOG4555|consen 142 AQLGSKFA 149 (175)
T ss_pred HHhCCHHH
Confidence 99998887
No 186
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.20 E-value=6.7e-05 Score=80.30 Aligned_cols=234 Identities=15% Similarity=0.100 Sum_probs=142.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cch-hhHh---hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHI-YSIA---GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQER 455 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~-~A~~---~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~r 455 (721)
..-|.-+....+++.|+.-+.+.++. +.. .=.. .+..+....|.+.+++..--..|....+ .-.+|.+.
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888889998888888766 221 1112 2445777788888776655444443211 12333333
Q ss_pred hhcCChhHHHHHHHHHHh-------cCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 004984 456 SLYCEGDKRWEDLDKATA-------LDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLE 516 (721)
Q Consensus 456 g~~~~~~eAl~d~~kAie-------LdP~~-----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~ 516 (721)
.+ ..+.+.+|+|++. +-.+. .++...+|.++..++.++.+++.|++|+.+..+. ....
T Consensus 90 ar---~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 90 AR---SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HH---HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 22 2444555555543 22222 2455557777777777777777777777664321 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
.+|-++-.+.|+++|+-.-.+|.++--++. ++|. -..|+.+
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~-------------------------------------l~d~--~~kyr~~ 207 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYG-------------------------------------LKDW--SLKYRAM 207 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcC-------------------------------------cCch--hHHHHHH
Confidence 344555555555555555555555543331 0111 1122222
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
..+.++.+|-++|+...|++..+.|.++.-..++ -+...|-|+-..|+.|.||+.||+|+.+.++
T Consensus 208 ---------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 208 ---------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred ---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 2467889999999999999999999888655443 4566788999999999999999999998766
Q ss_pred H
Q 004984 671 F 671 (721)
Q Consensus 671 ~ 671 (721)
-
T Consensus 279 ~ 279 (518)
T KOG1941|consen 279 L 279 (518)
T ss_pred h
Confidence 4
No 187
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.17 E-value=0.0024 Score=72.98 Aligned_cols=314 Identities=10% Similarity=0.048 Sum_probs=186.5
Q ss_pred HHHHHHHhhhcCCCC-chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----cc-----h
Q 004984 347 LYCLLSEVAMNLDPR-SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-----GH-----I 415 (721)
Q Consensus 347 ~~~~l~wV~~d~~~r-s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-----~~-----~ 415 (721)
+.-+..-|.++++.- +.....++..-.+-.++.+ ..-+.-|+.-|...|+++.|-..|++||.. +. .
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH
Confidence 334444555555522 3344556655443333222 344577888899999999999999999876 22 1
Q ss_pred hhHhhHHHHHHHhC-------------CHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHH
Q 004984 416 YSIAGLARLGYIKG-------------HKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY 482 (721)
Q Consensus 416 ~A~~~lg~~~~~~G-------------~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay 482 (721)
|+.+.--.+..+.+ +.+-....|.+.++..| .= .=+.+++.||++..-|
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~----------------~~--lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP----------------LL--LNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc----------------hH--HHHHHHhcCCccHHHH
Confidence 12111111112222 11111222222222221 00 1135788899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILG-FKLA-----L-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~-----~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
.+|-.++ .|+..+-+..|..|+. .+|. + ..|...|-+|...|+.+.|..-|++|.+.+=....-. ..+.
T Consensus 353 ~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL--a~vw 428 (835)
T KOG2047|consen 353 HKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL--AEVW 428 (835)
T ss_pred Hhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH--HHHH
Confidence 9997665 5788999999999987 4663 2 2345567789999999999999999998875542100 1111
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-------------------hhHHHHHHHHHHH
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-------------------GVLYFRQSLLLLR 616 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-------------------~~~~~~~g~~L~~ 616 (721)
..-+..+..-++++. |+.++++|... |.+ ...|-..+.+..-
T Consensus 429 ~~waemElrh~~~~~------------------Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 429 CAWAEMELRHENFEA------------------ALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHhhhhHHH------------------HHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 111122222222222 34445544443 222 2235556666666
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--HH---HHHHHHHHhhccCCCCCc
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-S--FE---AFFLKAYALADSSQDSSC 690 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-~--~~---a~~~~~~~~~~~~~~~~~ 690 (721)
+|=++.-...|++.+.|.=--+....|.|..|-.-.-|++|.+.|||-|+|=+ . |+ .|.-|...-. ++.-+
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry-gg~kl-- 566 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY-GGTKL-- 566 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh-cCCCH--
Confidence 78888778888888888888888888888888888888888888888888833 2 22 3444444421 22222
Q ss_pred hhhHHHHHHHhhc-CCCC
Q 004984 691 SSTVVSLLEDALK-CPSD 707 (721)
Q Consensus 691 ~~~~~~~~~~~~~-~~~~ 707 (721)
...-.|.|.||+ ||.+
T Consensus 567 -EraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 567 -ERARDLFEQALDGCPPE 583 (835)
T ss_pred -HHHHHHHHHHHhcCCHH
Confidence 344567788875 7754
No 188
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.17 E-value=2.1e-06 Score=94.95 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=79.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA 497 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e 497 (721)
|...+.-++++.|+..|.+||+++||.+..|.+|+. ...+.+|+.|+.+||+++|+..-+|+.||.+.+.++++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344566778888888888888888888887877753 2344999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-HHH
Q 004984 498 ALAEINRILGFKLA-LEC 514 (721)
Q Consensus 498 Al~~~~kAL~l~P~-~~~ 514 (721)
|+.+|++...+.|+ ++.
T Consensus 91 A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHhhhcCcCcHHH
Confidence 99999999999997 553
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.16 E-value=1.2e-05 Score=78.21 Aligned_cols=83 Identities=10% Similarity=-0.151 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|...|.-..-+||.++..|+.+|.+++.+|+|++|+..|-.|..++++ |.-.+.-|.++..+|+.++|...|+.|++
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 66666677777789999999999999999999999999999999999884 66667788899999999999999999999
Q ss_pred hCCCc
Q 004984 541 LSPDY 545 (721)
Q Consensus 541 L~P~~ 545 (721)
.|.+
T Consensus 134 -~~~~ 137 (165)
T PRK15331 134 -RTED 137 (165)
T ss_pred -Ccch
Confidence 5775
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0002 Score=74.16 Aligned_cols=242 Identities=17% Similarity=0.164 Sum_probs=166.7
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHH-
Q 004984 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDK- 470 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~k- 470 (721)
|.|..++.--.+.-.. +...-..++.|.|..+|.+..-+.....+- -|++ .+......| +..++-+.....
T Consensus 22 Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~l-qAvr~~a~~~~~e~~~~~~~~~l~E~ 98 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPL-QAVRLLAEYLELESNKKSILASLYEL 98 (299)
T ss_pred hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChH-HHHHHHHHHhhCcchhHHHHHHHHHH
Confidence 3455444433332222 333345678888999998765544322111 1111 111111121 111222332222
Q ss_pred -HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984 471 -ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (721)
Q Consensus 471 -AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~ 549 (721)
|-+-+-++.-...--|.+++.-|++++|+....+.. +.++.-..-.++.++.+.+-|..-.++...+|-+..
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--- 171 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--- 171 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---
Confidence 333344455566667889999999999998777733 234334445689999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (721)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (721)
..++ |.+|+.+...-..+.|. .=+|+.+-+..|..+.+.+.++.+...+||++||...++.
T Consensus 172 ----LtQL-------------A~awv~la~ggek~qdA--fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 172 ----LTQL-------------AQAWVKLATGGEKIQDA--FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred ----HHHH-------------HHHHHHHhccchhhhhH--HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 2223 77888888775555443 6688888888999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
|+.-+|++++.+.|+=.+-..+|.-.++...+---+..
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999988887665554
No 191
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=0.0036 Score=69.38 Aligned_cols=301 Identities=12% Similarity=0.083 Sum_probs=176.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cc--hhhHhh--HHHHHHHhCCHHHHHHHHHHH
Q 004984 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GH--IYSIAG--LARLGYIKGHKLWAYEKLNSV 441 (721)
Q Consensus 367 ~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~--~~A~~~--lg~~~~~~G~~~~A~~~~~~a 441 (721)
.+.++.+-|.++ ...+...+.--...|...-|...|++|++. +. ...... .|.--..+..++.|.-.|.-|
T Consensus 195 ~IYerfV~~HP~----v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 195 SIYERFVLVHPK----VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred HHHHHHheeccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544432 233333444445668888888999999887 32 222222 333344566777888888888
Q ss_pred HhcCCCc-HHHHHHH-----hhcCCh---hHHHH-----HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 442 ISSVTPL-GWMYQER-----SLYCEG---DKRWE-----DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (721)
Q Consensus 442 I~~~~~~-~~ay~~r-----g~~~~~---~eAl~-----d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~ 507 (721)
|..-|.. +.-++.- .++|+. ++++. .|++-++-||.+.++|...--+--..|+.+.-.+.|.|||.
T Consensus 271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 8877764 2222221 234433 55554 59999999999999999988888888999999999999998
Q ss_pred cCCC-HHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH------------HHHHHHHh
Q 004984 508 FKLA-LECLEL--------RFCF--FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ------------LHMLVREH 564 (721)
Q Consensus 508 l~P~-~~~~~~--------R~~~--~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~------------~~~~l~~~ 564 (721)
--|- .+.-+- +..+ -+..+|.+.+...|+.+|+|=|.-..-+.++=... .+..+-.+
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7664 222111 1122 35678999999999999999998543221111111 11111111
Q ss_pred hhhhhHHH---HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 565 IDNWTIAD---CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 565 ~~~~~~A~---~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
.....+.. -+..+=..+...|+- -..|++-|+-+|.+-.+|...|.+-..||+.+.|...|..|+.-..-+.--+
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRc--RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRC--RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHH--HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 11111111 011111111111211 2356666777777777777777777777777777777777766554443333
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 642 VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEA 673 (721)
Q Consensus 642 ~~~G~~Ly--~~G~~deAl~~ye~Ai~i~~~~~a 673 (721)
...+-|-+ ..|.++.|-+.|++-+...+-...
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 33443332 236777777777777776555553
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00019 Score=70.76 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
+.++....+.++..|+.. -.+.+|+++.++|++.||...|..++. +.-++..+.-++.+....+++.+|..-+++..
T Consensus 73 ~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 333444455666667654 455688888888888888888888885 22345555567778888888888888888888
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (721)
+-+|....-. ..-+.+........+.+| -+-+++++.--|+ +.+....+.-|.++||
T Consensus 152 e~~pa~r~pd----~~Ll~aR~laa~g~~a~A------------------esafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 152 EYNPAFRSPD----GHLLFARTLAAQGKYADA------------------ESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hcCCccCCCC----chHHHHHHHHhcCCchhH------------------HHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 8887753211 111122222222333323 3345566665555 3556666777777777
Q ss_pred hHHHHHHHHH----HHHhCCCChhHHHHHHHHHHhcCCH
Q 004984 620 PEAAMRSLQL----ARQHAASDHERLVYEGWILYDTSHC 654 (721)
Q Consensus 620 ~eeAl~~~~~----Al~l~P~~~ea~~~~G~~Ly~~G~~ 654 (721)
..||-.-|.. +.+-.| +..-.++||+-...|+.
T Consensus 209 ~~ea~aq~~~v~d~~~r~~~--H~rkh~reW~~~A~~~~ 245 (251)
T COG4700 209 LREANAQYVAVVDTAKRSRP--HYRKHHREWIKTANERL 245 (251)
T ss_pred hhHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHH
Confidence 7666554433 333333 23345667766554443
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=3.8e-05 Score=85.34 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHH
Q 004984 396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKA 471 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kA 471 (721)
.+++++|+..|++..+.+| .....+++++...++..+|++.+++++...|..+..+..++.+ ++++.|+....+|
T Consensus 182 t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4679999999999776664 4556788888888887777777777776666665555554432 2335555555555
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~ 503 (721)
+++.|+...+|+.+|.+|..+|++++|+..+|
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555555554
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=4.8e-05 Score=74.07 Aligned_cols=79 Identities=10% Similarity=-0.070 Sum_probs=47.0
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~ 680 (721)
|+++++|+.+|.++..++.+++|+..|-.|.-++++|+...++.|.|++.+|+.++|...|+-+|. +|..+.---||-+
T Consensus 68 ~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~ 146 (165)
T PRK15331 68 FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALV 146 (165)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence 333445555666666666666666666666666666666666666666666666666666666666 4554444444433
No 195
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.10 E-value=5.7e-06 Score=88.18 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=111.3
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCc----ceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~----~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL 259 (721)
|.+-++++ .|||+.++ .+..||+.||.|+|.|+.. ....++ ..+..+.+.+++|+|+++-+ +.++-..+++
T Consensus 295 iql~~~~R-yP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvl 369 (516)
T KOG0511|consen 295 IQLPEEDR-YPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVL 369 (516)
T ss_pred cccccccc-ccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence 44444444 99999999 5678999999999999652 223344 46778999999999999999 9999999999
Q ss_pred HHhhhcChh---hHHHHHHHHHHhhcC--CHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChHHHHHHhc
Q 004984 260 IFANKFCCE---RLKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFS 329 (721)
Q Consensus 260 ~aAd~~~v~---~L~~~C~~~L~~~l~--~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~ 329 (721)
.+|+++-++ .|+.+-...+.+... +.-++..+++++.+-.++.|......++.+|+...+++++..+.+.
T Consensus 370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 999999776 266666666655442 2356899999999999999999999999999888777776666553
No 196
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=5.5e-05 Score=84.13 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
|+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus 219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML 297 (395)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence 47788899999999999999999999999999999999999999999999999999999999999999996665 66666
Q ss_pred CCHHHHHHHHHHhhc
Q 004984 669 RSFEAFFLKAYALAD 683 (721)
Q Consensus 669 ~~~~a~~~~~~~~~~ 683 (721)
|..+-+-+|-..-.+
T Consensus 298 ~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 298 TYKDKYKLKRPVPAK 312 (395)
T ss_pred CCccchhhhcCCCcc
Confidence 666666666555333
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.09 E-value=3.7e-06 Score=71.29 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGF----KLA----LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l----~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
|+-+.+|.++|.+|.++|++++|+..|++|+.+ .++ ...+.+.|.++..+|++++|+..|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455788999999999999999999999999976 222 234567899999999999999999999986
No 198
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.09 E-value=2.3e-06 Score=76.47 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCC
Q 004984 288 AVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (721)
Q Consensus 288 ~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~ 359 (721)
|+.++.+|..++++.|...|.+++..||.+ .|+.+.+..++++++++ +..|..++.++++|+.++..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence 788899999999999999999999888875 67888999999999984 77888999999999999987
Q ss_pred CCchhHHHHHHHHHHhh
Q 004984 360 PRSDKTVCFLERLLESA 376 (721)
Q Consensus 360 ~rs~~~~~LLe~Lv~~a 376 (721)
.|.++...||+. +|++
T Consensus 76 ~r~~~~~~Ll~~-iR~~ 91 (103)
T PF07707_consen 76 NREEHLKELLSC-IRFP 91 (103)
T ss_dssp HHTTTHHHHHCC-CHHH
T ss_pred HHHHHHHHHHHh-CCcc
Confidence 788888899976 5543
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.1e-05 Score=66.27 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R 518 (721)
++|+..|+++++.+|++..++..+|.+++++|++++|...+++++..+|+ +..+..+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887 4444333
No 200
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00075 Score=72.22 Aligned_cols=259 Identities=14% Similarity=0.055 Sum_probs=143.6
Q ss_pred hccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-------CcHHHHHHHhhcCChhHH
Q 004984 395 LRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQERSLYCEGDKR 464 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-------~~~~ay~~rg~~~~~~eA 464 (721)
...+|..|+...+-++..+. .+....+|.+++.+|++++|++.|.-+.+... +++..++-.|.| .+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HHH
Confidence 44578889888887776632 23455789999999999999999987776543 344555555655 666
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 465 l~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
-..-. -.|+.+---.-+-.+-..+|+-+ -+..|..-++- ..+.-..++.++...--|.+||..|.+++.-+|+
T Consensus 111 ~~~~~----ka~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAE----KAPKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHh----hCCCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 54322 23444332222223333333322 22233332210 1111112233333333466677777777766666
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc--CChHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEA 622 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l--g~~ee 622 (721)
|......++ +.-...+.++.+ -.++.-=|...|+++.+.+.++-.+.|+ ||..+
T Consensus 184 y~alNVy~A------LCyyKlDYydvs------------------qevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 184 YIALNVYMA------LCYYKLDYYDVS------------------QEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred hhhhHHHHH------HHHHhcchhhhH------------------HHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 633221111 111111222222 3344444566666666666666555552 22221
Q ss_pred HH----------------HHH----------HHHHHhCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 623 AM----------------RSL----------QLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 623 Al----------------~~~----------~~Al~l~P~----~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+. ... +-|++.-|. -+||..|+...++.+|+.+||+..-. .++|...
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence 11 110 123333332 46899999999999999999986644 5899988
Q ss_pred -HHHHHHHHhhccCCCCCc
Q 004984 673 -AFFLKAYALADSSQDSSC 690 (721)
Q Consensus 673 -a~~~~~~~~~~~~~~~~~ 690 (721)
.|-+||.+.+--+....|
T Consensus 317 ~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHHHHHHHhhhhcCc
Confidence 999999998866655443
No 201
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0007 Score=71.10 Aligned_cols=277 Identities=15% Similarity=0.089 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~--~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~ 460 (721)
.-++-.+|.+|....+|.+|..+|++.-...|.++.+ +-+..+++.|.+..|++... .+..++++ .++.. +
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~-~~~D~~~L----~~~~l--q 116 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF-LLLDNPAL----HSRVL--Q 116 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH-HhcCCHHH----HHHHH--H
Confidence 3456789999999999999999999977666666543 45677888899998887644 22222322 22210 0
Q ss_pred hhHHHH-------HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHH
Q 004984 461 GDKRWE-------DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (721)
Q Consensus 461 ~~eAl~-------d~~kAieLdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~ee 530 (721)
.+.||. --+-.++.-| +.+...++.|-++...|+|++|+.-|+.|+++.- ++-..++.+.++...|+++.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS 196 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence 122221 1233455556 6788999999999999999999999999999876 57777999999999999999
Q ss_pred HHHHHHHHHhhC----CCch--h--------hhhhH---------HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 004984 531 ALCDVQAILTLS----PDYR--M--------FEGRV---------AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (721)
Q Consensus 531 Al~d~~kal~L~----P~~~--~--------~~~~~---------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (721)
|+.....+++.. |..- | +.|.. .+.++...+.-..++++.|.
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~--------------- 261 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQ--------------- 261 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHH---------------
Confidence 999988887743 4321 0 11111 13334444444444444442
Q ss_pred chHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 588 GSLSVIYQMLESDAP-----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (721)
Q Consensus 588 ~al~~~~qaL~l~P~-----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye 662 (721)
+.-+.+-|+ +|....|++.. ..-++|.+..+-++-.++++|--.|.+-|+=+++.+..-|+-|-..
T Consensus 262 ------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv-- 332 (459)
T KOG4340|consen 262 ------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV-- 332 (459)
T ss_pred ------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH--
Confidence 111222232 34556666543 3356788889999999999998888888888888888777776643
Q ss_pred HHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984 663 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (721)
Q Consensus 663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (721)
++-+|+..=+||- .|...||+--.-||.
T Consensus 333 --LAEn~~lTyk~L~--------------~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 333 --LAENAHLTYKFLT--------------PYLYDLLDALITCQT 360 (459)
T ss_pred --HhhCcchhHHHhh--------------HHHHHHHHHHHhCCC
Confidence 4456776666653 344455555555554
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=4.8e-06 Score=59.88 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl 658 (721)
|++|++++|+|+++++++|++|+..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
No 203
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=4.7e-06 Score=59.93 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=31.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~ 500 (721)
|+|||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 204
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.0013 Score=77.49 Aligned_cols=227 Identities=14% Similarity=0.033 Sum_probs=150.3
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHH--HHHHh--hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 428 KGHKLWAYEKLNSVISSVTPLGWM--YQERS--LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (721)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~~~~~~a--y~~rg--~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~ 503 (721)
.+++..|++...+.++.+|+...+ +-... +.|++++|+..++..-.+.|++....--+-.+|.++|++++|...|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456666777777777777764322 22221 23555777777777777788888888889999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984 504 RILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (721)
Q Consensus 504 kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (721)
||+.-+|+.+.+.....+|.+-++|.+--+.=-+.-+.-|+.+.+.+-+.-..+++ ....+...
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~----------- 165 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL----------- 165 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc-----------
Confidence 99999999666666777888888876644433333346788766554443333322 22222221
Q ss_pred ccccc-hHH--HHHHHHHhC-CCChhH-HHHHHHHHHHcCChHHHHHHH-HHHHHhCCCChhHHHHHHHH-HHhcCCHHH
Q 004984 584 VDDIG-SLS--VIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSL-QLARQHAASDHERLVYEGWI-LYDTSHCEE 656 (721)
Q Consensus 584 ~dd~~-al~--~~~qaL~l~-P~~~~~-~~~~g~~L~~lg~~eeAl~~~-~~Al~l~P~~~ea~~~~G~~-Ly~~G~~de 656 (721)
+.+- +++ .+.+.++.. +-...+ -+-.=.+|..+|.++||...+ ..-.+..|.....+.+.+.- +-.++++++
T Consensus 166 -~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 -DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred -cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 1011 233 677777776 222222 223345777899999999999 44555566666666666655 455699999
Q ss_pred HHHHHHHHHhcCCCH
Q 004984 657 GLRKAEESIQMKRSF 671 (721)
Q Consensus 657 Al~~ye~Ai~i~~~~ 671 (721)
-.+.-.+.+.-.|+.
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999999985
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2e-05 Score=80.27 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
++..|+..|.+||-++|+.+..|.||+..++.+++++....+.+||++|+|+ ...++..|..+.....|.+||..+++|
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999998 677788999999999999999999999
Q ss_pred Hhh
Q 004984 539 LTL 541 (721)
Q Consensus 539 l~L 541 (721)
..+
T Consensus 105 ~sl 107 (284)
T KOG4642|consen 105 YSL 107 (284)
T ss_pred HHH
Confidence 654
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.0011 Score=65.60 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=91.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHhhcCChhHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCH
Q 004984 423 RLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNV 495 (721)
Q Consensus 423 ~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg~~~~~~eAl~d~~kAie-LdP~~~~ay~~rg~~l~~lg~~ 495 (721)
....+.=|++.+++...+.++.-|. ++.+..+.|.+ .||...|.+|+. +-.+++.-...++.+....+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~---~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRY---HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhh---hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3344444555555555555555553 45555555555 777777777664 5667778888999999999999
Q ss_pred HHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 496 EAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 496 ~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
.+|...+++..+.+|. |+.....+..+..+|++++|...|+.++.--|+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999999999999994 66666677889999999999999999999999863
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.89 E-value=0.0003 Score=67.13 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
+..+++.|...++.|+|++|+..|++...--|- ..+-..++.+|.+.|++++|+..+++-++|+|++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 467888999999999999999999999998884 233455789999999999999999999999999843
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.7e-05 Score=78.35 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM- 667 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i- 667 (721)
|+.+|-+||-++|..+.+|.|++.+++++++++-...+.++|+++.|+.+-+++.+|.++.....|++|++...||.++
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred ---CCCHHHHHHHHHHhhccC-CCCCchhhHHHHHH
Q 004984 668 ---KRSFEAFFLKAYALADSS-QDSSCSSTVVSLLE 699 (721)
Q Consensus 668 ---~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 699 (721)
.++|+-=+-++.-.|--- -..+++..+.|.+|
T Consensus 109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred hcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 344443333333333222 22333344455444
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.83 E-value=0.0047 Score=64.22 Aligned_cols=146 Identities=19% Similarity=0.207 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~~ 454 (721)
...+|+-|...++.|+|++|+..|++.....| ..+...++-++++.|+++.|+...++-|.++|+ ...+++-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 45678999999999999999999999876633 335667888999999999999999999999774 5677777
Q ss_pred HhhcC------------ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004984 455 RSLYC------------EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (721)
Q Consensus 455 rg~~~------------~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (721)
+|... ...+|+.+|...|.--|+..++---. .++-....+++..+.+| |..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~----~~i~~~~d~LA~~Em~I------------aryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK----ARIVKLNDALAGHEMAI------------ARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH----HHHHHHHHHHHHHHHHH------------HHHH
Confidence 77531 01555666666666666654332111 11111222222222222 3467
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 004984 523 LALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 523 ~~lgd~eeAl~d~~kal~L~P~ 544 (721)
.+.|.+..|+.-++.+++-=|+
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred HHhcChHHHHHHHHHHHhcccc
Confidence 7777777777777777776444
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.82 E-value=0.00014 Score=69.42 Aligned_cols=63 Identities=21% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT 446 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~ 446 (721)
..++..|...++.|+|++|++.|+.....-| ..|...+|-+|+..|++.+|++.+.+-|+++|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3456666666677777777766666444411 22334455555555555555555555555544
No 211
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.80 E-value=2.2e-05 Score=83.59 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004984 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (721)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~ 501 (721)
+..|.++.|++.|.++|+++|.++..|-.|+.. .+...|+.|++.|+++||+.+..|..||.+...+|++++|-.+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 556889999999999999999999999999753 4558999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH
Q 004984 502 INRILGFKLALE 513 (721)
Q Consensus 502 ~~kAL~l~P~~~ 513 (721)
+..|.+++-+.+
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 999999876543
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00056 Score=71.80 Aligned_cols=224 Identities=18% Similarity=0.072 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
.+||+.+.--.+-+|..-....-+|.+|...++|.+|-..|...-.+-|...-+ ...+..+...+.+.+|++.......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 777777777778888888888888888888888999999998888888874433 3355667778888888876554432
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC--CChhHHHHHHHHHHHcC
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P--~~~~~~~~~g~~L~~lg 618 (721)
- |+ +....-+.+.| -.+++-|..++-+.++| -| +.++..++.|-++.+-|
T Consensus 107 ~-~~----------------L~~~~lqLqaA-------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PA----------------LHSRVLQLQAA-------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HH----------------HHHHHHHHHHH-------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence 1 21 11111122222 22333344445555544 35 67888999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC------------------------
Q 004984 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ----MKRS------------------------ 670 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~----i~~~------------------------ 670 (721)
.+|+|+.-|+.|++..--++-.-|+.+.+.|..|+++.|+..-.+.|+ -.|.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 999999999999999999999999999999999999999988776665 2343
Q ss_pred --HHHHHHHHHHh-------------h------ccCCCCCchhhHHHHHHHhhcCCCCcccccccc
Q 004984 671 --FEAFFLKAYAL-------------A------DSSQDSSCSSTVVSLLEDALKCPSDRLRKGTEQ 715 (721)
Q Consensus 671 --~~a~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (721)
.+||+||+-.. - .+-+||-+=- -.-|-++-.=|.||+||=|-|
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH--N~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH--NQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh--HHHHhcccCCccccHHHHHHH
Confidence 25899997532 2 2456664321 123445556688888886543
No 213
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00024 Score=72.73 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChh
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~ 462 (721)
-++++.|+-++..|+|+||+..|..||.. .... ...+=|+.+. ++.-...+.+.-|....+.+-|.| -
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~-------lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~---y 247 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ-------LKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEY---Y 247 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH-------hccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHH---H
Confidence 35689999999999999999999998754 1100 1111222222 111122333444566666666666 7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~ 514 (721)
++++.-+..+..+|++..||+.||-+...-=+.+||-+||.++|+++|....
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 7788888888888888888888888888888888888888888888886443
No 214
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.001 Score=68.91 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 004984 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILG 507 (721)
Q Consensus 429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~-~~eAl~~~~kAL~ 507 (721)
.++.+++..|+..|..+- +...|+.--+.+|.++|.+.-.|.+|-.++..++. ..+=+..++++++
T Consensus 40 e~fr~~m~YfRAI~~~~E-------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e 106 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNE-------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIE 106 (318)
T ss_pred hhHHHHHHHHHHHHhccc-------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345566666665555542 23556666678999999999999999988888764 6677888888998
Q ss_pred cCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 004984 508 FKL-ALECLELRFCFFLALEDYQ-AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (721)
Q Consensus 508 l~P-~~~~~~~R~~~~~~lgd~e-eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 585 (721)
-+| +.+-|+.|..+...+|+.. .=+.-.+.++..|.++.. +.+.+.=+-.....|+.-
T Consensus 107 ~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH------aWshRqW~~r~F~~~~~E-------------- 166 (318)
T KOG0530|consen 107 DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH------AWSHRQWVLRFFKDYEDE-------------- 166 (318)
T ss_pred hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh------hhHHHHHHHHHHhhHHHH--------------
Confidence 888 4888888888877777666 555666666666655522 112111111111111111
Q ss_pred ccchHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCh-----HHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984 586 DIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-LNCP-----EAAMRSLQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 586 d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~-lg~~-----eeAl~~~~~Al~l~P~~~ea~~~~G~~L 648 (721)
|...++.|+.|-.|-.+|+.|=.+... .|=. +.=+......+.+.|+|-.|+.|+.=++
T Consensus 167 ----L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 167 ----LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred ----HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 556666666666666666655444433 1111 1223334455555555555555554333
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.72 E-value=5.3e-05 Score=53.81 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
+++++++|.+++.+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 216
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.14 Score=57.21 Aligned_cols=319 Identities=12% Similarity=0.093 Sum_probs=210.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCC
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCE 460 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~ 460 (721)
...|.--..++++..|...|++||..++.+ .+...+-.-.+......|...+++||...|.....|+.-- .+|-
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 344555667788899999999999886544 3444555566677788888999999999998776665531 2233
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..+|...|++=++..|+- .+|..--.--.+.+..+.|-..|.|-+-.-|+...|..-+-+-.+-|..+-|...|.+|++
T Consensus 157 i~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred cHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 388888999999999974 5676666666677788888888888887788877776666677788888888888888888
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccc----------------cccccc----hHH-----HHH
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWS----------------SVDDIG----SLS-----VIY 594 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~----------------~~dd~~----al~-----~~~ 594 (721)
.=.+..+.. .....-...+...+.++.|...-+. .|.+. ..+|.. ++. .|+
T Consensus 236 ~~~~d~~~e---~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 236 FLGDDEEAE---ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 655543211 0111111122222222222211110 01111 112222 222 789
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH----HHHHH------hcCCHHHHHHHHHHH
Q 004984 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----GWILY------DTSHCEEGLRKAEES 664 (721)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~----G~~Ly------~~G~~deAl~~ye~A 664 (721)
+.+..+|-|-++||..=.+..-.|..+.-++.|.+|+.--|-..+--+.+ =|+-| ...+.+-+-+.|...
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888754433222 23322 358999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhc----cCCCCCchhhHHHHHHHhh-cCCCCccccc
Q 004984 665 IQMKRSFEAFFLKAYALAD----SSQDSSCSSTVVSLLEDAL-KCPSDRLRKG 712 (721)
Q Consensus 665 i~i~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 712 (721)
|.|=|--.==|-|-+.++- --+|-.-. -+.|-.|+ +||-|.|=||
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A---RkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA---RKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHH---HHHHHHHhccCCchhHHHH
Confidence 9998854433333333321 12232222 23455554 7999888776
No 217
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.62 E-value=7.4e-05 Score=66.21 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=70.0
Q ss_pred EEEEEcCeEEEeehhhhh-cCCHHHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCCCCHHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLA-a~S~yF~amF~~~---~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~i~~~~v~~L 258 (721)
|+|.|||+.|.+-+..|. ....+|..||.+. ........+-|. =+|..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999974 445566778776 799999999999999 77772235678999
Q ss_pred HHHhhhcChhhH-HHHH
Q 004984 259 LIFANKFCCERL-KDAC 274 (721)
Q Consensus 259 L~aAd~~~v~~L-~~~C 274 (721)
+.-|++|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7776
No 218
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00031 Score=72.09 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=83.1
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC-c-CCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC--HHHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~-E-s~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~--~~~v~~LL 259 (721)
|.+-|||+.|..++.-|.-...+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 668899999999999999999999999999873 2 234668887 7999999999999988877 65 45788999
Q ss_pred HHhhhcChhhHHHHHHHHHHhhcC
Q 004984 260 IFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 260 ~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
.=|.+|.+++|++.|...+.....
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccc
Confidence 999999999999999998887654
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.56 E-value=0.00015 Score=55.07 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (721)
+.+|+.+|.++..+|++++|++.|+++++.+|+|++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678889999999999999999999999999999999888774
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.55 E-value=0.022 Score=61.55 Aligned_cols=263 Identities=14% Similarity=0.053 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----
Q 004984 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---- 447 (721)
Q Consensus 379 ~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---- 447 (721)
......++-++...+...-++.+++.+-..-+.+. +.+++.-+|+++.-+|.++.+++.|++|...-.+
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 33456677777777777777888877777666652 2344556888888899999999999998886443
Q ss_pred ---------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 448 ---------LGWMYQERSLYCEGDKRWEDLDKATALDPTLS----------YPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 448 ---------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~----------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
+|..|-...++ ++|+-...||.+|-.... .+.+.++.+|..+|+.-.|.+..+.|-++
T Consensus 159 ~LElqvcv~Lgslf~~l~D~---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDY---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred eeeeehhhhHHHHHHHHHhh---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444444334 888888888888765543 56778999999999999999999999887
Q ss_pred CCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984 509 KLA--LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (721)
Q Consensus 509 ~P~--~~~~~-----~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (721)
... ..+.+ ..|.+|...||.|.|.+-|+.|...-..--.-.|++.+..-. |.||..+--.
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~------------Akc~~~~r~~- 302 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGA------------AKCLETLRLQ- 302 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH------------HHHHHHHHHh-
Confidence 542 22233 346789999999999999999987543321112233333222 3333222111
Q ss_pred ccccccchHHHHHHHHHhCCCC----h--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 004984 582 SSVDDIGSLSVIYQMLESDAPK----G--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (721)
Q Consensus 582 ~~~dd~~al~~~~qaL~l~P~~----~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~d 655 (721)
...-.-+++....++|++...- . ..+-+.+.++--+|..++=-..+.+|-+.. .+.-.|-|.+=-..|--+
T Consensus 303 ~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~ 379 (518)
T KOG1941|consen 303 NKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKN 379 (518)
T ss_pred hcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCc
Confidence 0001122566666776664321 1 246677888877888887777777765553 556667777766666666
Q ss_pred HHHHH
Q 004984 656 EGLRK 660 (721)
Q Consensus 656 eAl~~ 660 (721)
|-++.
T Consensus 380 e~LqA 384 (518)
T KOG1941|consen 380 ERLQA 384 (518)
T ss_pred ccccc
Confidence 65543
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.55 E-value=0.00012 Score=51.89 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~ 511 (721)
.+|+++|.++..+|++++|+..|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.003 Score=65.54 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..-+....++..+|.|.-.+..++++|+.+|. +.....+|-+-++.||.+.|...|+++-+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45566888999999999999999999999864 66666678899999999999999997764
No 223
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.52 E-value=9.8e-05 Score=65.19 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=54.3
Q ss_pred HHHHHHhcccCChhHHHHHHHHHHhhcc--------cCCChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCCC
Q 004984 289 VELMGYAIEENSPVLAVSCLQVFLRELP--------DCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360 (721)
Q Consensus 289 ~~l~~~A~~~~~~~L~~~c~~~~l~~~~--------~~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~ 360 (721)
+.++.+|..|+++.|.+.|.+++..|+. ..|+.+.+..++.+++++ +..|..++.++++|+.++...
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~~~ 76 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDPER 76 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCHHH
Confidence 4455555555556666666555555432 367888999999999985 667888999999999998753
Q ss_pred CchhHHHHHHH
Q 004984 361 RSDKTVCFLER 371 (721)
Q Consensus 361 rs~~~~~LLe~ 371 (721)
+. +...+++.
T Consensus 77 ~~-~~~~ll~~ 86 (101)
T smart00875 77 RR-HLPELLSH 86 (101)
T ss_pred HH-HHHHHHHh
Confidence 33 66667766
No 224
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.52 E-value=0.15 Score=58.94 Aligned_cols=290 Identities=14% Similarity=0.081 Sum_probs=190.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchh------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----------c
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP----------L 448 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~----------~ 448 (721)
-+..+|..|-..|+++.|...|++|.+.+... .|..-|-.-....+++.|++.+.+|...=.+ -
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 34567888888999999999999999885322 2334444555667888888888877654111 1
Q ss_pred HHHHHHH-----hhc-------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-HH
Q 004984 449 GWMYQER-----SLY-------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LA-LE 513 (721)
Q Consensus 449 ~~ay~~r-----g~~-------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P~-~~ 513 (721)
.++-..+ +.| |..+.-.+.|++.|+|.=--+..-+|-|..+-+-.-+++|...|.|.|.|= |+ .+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1111111 122 333444578999999999999999999999999999999999999999974 34 56
Q ss_pred HHHH-H--HHHHHhcCCHHHHHHHHHHHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc---
Q 004984 514 CLEL-R--FCFFLALEDYQAALCDVQAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV--- 584 (721)
Q Consensus 514 ~~~~-R--~~~~~~lgd~eeAl~d~~kal~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~--- 584 (721)
.|.. + +......-..+.|...|++|++.-|--.. |.-..-....-|+.++...-++.|.--+...+++.-+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6643 2 33345555789999999999999884321 2112222222234444433333332111111111000
Q ss_pred -----cccc---hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 004984 585 -----DDIG---SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (721)
Q Consensus 585 -----dd~~---al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~ 654 (721)
.-+| --..|++||+.=|.+- +...+-|..-.++|..+.|..+|.-.-++-|-....-+.-.|--+...|=
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG 708 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG 708 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC
Confidence 1112 2338999999977653 34566777888899999999999998888877777777777877666444
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 004984 655 EEGLRKAEESIQMKRSFEAFFL 676 (721)
Q Consensus 655 deAl~~ye~Ai~i~~~~~a~~~ 676 (721)
.| .-|+.-+.|.+|.+|=|+
T Consensus 709 ne--dT~keMLRikRsvqa~yn 728 (835)
T KOG2047|consen 709 NE--DTYKEMLRIKRSVQATYN 728 (835)
T ss_pred CH--HHHHHHHHHHHHHHHhhh
Confidence 43 357888888888886554
No 225
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.51 E-value=0.032 Score=65.35 Aligned_cols=265 Identities=14% Similarity=0.020 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHhc-----cchHHHHHHHHHHHh-------ccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcC
Q 004984 383 LLAFHQLGCVRLLR-----KEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSV 445 (721)
Q Consensus 383 ~la~~~lG~~~~~~-----g~y~eA~~~f~~AL~-------~~~~~A~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~ 445 (721)
..+.+.+|.++..- .+.+.|+.+|..|.+ .++..|.+++|++|.... +...|...|.++.+..
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 45667777776654 689999999999888 577788999999998854 6778999999999988
Q ss_pred CCcHHHHHHHhh-cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCHHHHH
Q 004984 446 TPLGWMYQERSL-YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----QNVEAALAEINRILGFKLALECLE 516 (721)
Q Consensus 446 ~~~~~ay~~rg~-~~----~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l----g~~~eAl~~~~kAL~l~P~~~~~~ 516 (721)
.+.+..+...-. .+ ....|...|..|.. -.+..+++++|..|..- .+...|...|.+|-+.+ .+.+.+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~ 400 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAY 400 (552)
T ss_pred CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHH
Confidence 776666554421 11 23688888877764 56788999999888754 46889999999999887 455455
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHH
Q 004984 517 LRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (721)
Q Consensus 517 ~R~~~~~~-lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~q 595 (721)
.++.++.- .++++.+..-+....++.-...... +..+.. ... ..+.......+...+...+.+
T Consensus 401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~----a~~l~~----~~~--------~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN----AAYLLD----QSE--------EDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH----HHHHHH----hcc--------ccccccccccchhHHHHHHHH
Confidence 55543222 2888888877777766654432211 111100 000 011111001111212333333
Q ss_pred HHHhCCCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHhc
Q 004984 596 MLESDAPKGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQM 667 (721)
Q Consensus 596 aL~l~P~~~~~~~~~g~~L~~l----g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~----G~~deAl~~ye~Ai~i 667 (721)
+ ...+++.+.+.+|.++..- .+++-|...|.+|-.-. +.+.+|+|+.+-.- + +..|...|.+|.+.
T Consensus 465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 3 3467888888888888774 45889999999999888 99999999987543 4 78999999999887
Q ss_pred CCCHH
Q 004984 668 KRSFE 672 (721)
Q Consensus 668 ~~~~~ 672 (721)
+...-
T Consensus 539 ~~~~~ 543 (552)
T KOG1550|consen 539 DSRAY 543 (552)
T ss_pred Cchhh
Confidence 65543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.0015 Score=68.34 Aligned_cols=105 Identities=16% Similarity=0.048 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (721)
Q Consensus 515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~ 594 (721)
+|+.+.-+...|||.+|..-|..-+.--|+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------------------------------------------------ 175 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------------------------------------------------ 175 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------------------------------------------------
Confidence 57777778899999999999999999999862
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
--+.++|.+|.+++.+|++++|...|..+.+-.|++ +|+++.+|.++.++|+-|+|=..|++.|+-=|..
T Consensus 176 -------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 176 -------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 235788999999999999999999999999988874 6889999999999999999999999999999988
Q ss_pred HHH
Q 004984 672 EAF 674 (721)
Q Consensus 672 ~a~ 674 (721)
++=
T Consensus 249 ~aA 251 (262)
T COG1729 249 DAA 251 (262)
T ss_pred HHH
Confidence 743
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.0018 Score=67.78 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~ 557 (721)
.++-|.-+...|+|.+|...|..=|.--|+ +.+++.+|-++..+|+|++|...|.++.+-.|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 677788889999999999999999999895 5677888999999999999999999999988885
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
|+-+++.+-+|.++.++|..++|-+.+++.+.--|+.
T Consensus 212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 6778899999999999999999999999999999987
Q ss_pred hhHH
Q 004984 638 HERL 641 (721)
Q Consensus 638 ~ea~ 641 (721)
.-|.
T Consensus 249 ~aA~ 252 (262)
T COG1729 249 DAAK 252 (262)
T ss_pred HHHH
Confidence 6554
No 228
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.48 E-value=5.2e-05 Score=77.89 Aligned_cols=57 Identities=26% Similarity=0.232 Sum_probs=44.8
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcCC---------cceEEeCCCCCCHHHHH-HHhhhhccCCCC
Q 004984 191 EKIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLR-IISDFSVTGSLN 248 (721)
Q Consensus 191 ~~~~aHr~vLAa~S~yF~amF~~~~~Es~---------~~~I~l~~~~is~~~~~-~lL~f~Ytg~l~ 248 (721)
.+|+||+.|.|++|++||.++....+|.. ...|.+.+ -|=|.+|. .++.|+||++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 47999999999999999999976554433 35677776 56677765 468999999887
No 229
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.47 E-value=0.00046 Score=60.53 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=63.6
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHhhhh-----ccCC------CCC
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~is~~~~~~lL~f~-----Ytg~------l~~ 249 (721)
|+++- +|.+|-..| -+|.-|+-.|+||.|... |...++|.+++ |....++.+.+|+ ||+. .+
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 56665 455666555 468899999999998755 55568999996 9999999999987 5664 33
Q ss_pred CCHHHHHHHHHHhhhcCh
Q 004984 250 VTPNLLLEILIFANKFCC 267 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v 267 (721)
|+++.+++||.+|+++.+
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 789999999999999864
No 230
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0033 Score=69.87 Aligned_cols=277 Identities=18% Similarity=0.142 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHh-c------c-------------chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN-A------G-------------HIYSIAGLARLGYIKGHKLWAYEKLNS 440 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~-~------~-------------~~~A~~~lg~~~~~~G~~~~A~~~~~~ 440 (721)
..-++++|+|+++++.|.|.-++.+|.+|+. . + .-...++.|..+...|++..|..+|.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 3457789999999999999999999999995 1 1 122477899999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhcC---------------------------Ch--------------------------hHHHHH
Q 004984 441 VISSVTPLGWMYQERSLYC---------------------------EG--------------------------DKRWED 467 (721)
Q Consensus 441 aI~~~~~~~~ay~~rg~~~---------------------------~~--------------------------~eAl~d 467 (721)
++..+..++..|...++.| ++ +=|.-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 9999888888887764321 00 223345
Q ss_pred HHHHHhcCCCCh--HHHHHHHHHHHhcCCHHHH------------HH-HHHHHHhcCCC-HHHHH--------HHHHHHH
Q 004984 468 LDKATALDPTLS--YPYMYRASSLMTKQNVEAA------------LA-EINRILGFKLA-LECLE--------LRFCFFL 523 (721)
Q Consensus 468 ~~kAieLdP~~~--~ay~~rg~~l~~lg~~~eA------------l~-~~~kAL~l~P~-~~~~~--------~R~~~~~ 523 (721)
++.||-|-|.-. ....+.|..--+.|.-.|- -. -+..+..-.|. .+.+. +-+++-.
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L 520 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL 520 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 555555543210 0000011100011100000 00 00000000111 11111 1223445
Q ss_pred hcCCHHHHHHHHHHHHhhCCCc--hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH--HHHHH---
Q 004984 524 ALEDYQAALCDVQAILTLSPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL--SVIYQ--- 595 (721)
Q Consensus 524 ~lgd~eeAl~d~~kal~L~P~~--~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al--~~~~q--- 595 (721)
++||.-.|+..-++.+.+..-. .-+.|++=+...+. ..++..+|-++.+-|.. ..++++ .. .++++
T Consensus 521 ~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~----lldr~seA~~HL~p~~~--~~~~f~~~~n~~Df~~~~~ 594 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALC----LLDRPSEAGAHLSPYLL--GQDDFKLPYNQEDFDQWWK 594 (696)
T ss_pred HhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH----HcCChhhhhhccChhhc--CCcccccccchhhhhhhhc
Confidence 5555555555555555543211 11233332222221 12222223222221111 112222 11 12322
Q ss_pred -----------HH-----HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHhcCCHHHH
Q 004984 596 -----------ML-----ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 596 -----------aL-----~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P--~~~ea~~~~G~~Ly~~G~~deA 657 (721)
.- ..+..-...++|+|.++...|.++.|...+..|..+-| .+.+|....-.+-+.+|+.+.|
T Consensus 595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~a 674 (696)
T KOG2471|consen 595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDA 674 (696)
T ss_pred cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcch
Confidence 11 22222335689999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHHH
Q 004984 658 LRKAEE 663 (721)
Q Consensus 658 l~~ye~ 663 (721)
++...|
T Consensus 675 l~~lk~ 680 (696)
T KOG2471|consen 675 LARLKQ 680 (696)
T ss_pred HHHHHh
Confidence 987765
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.41 E-value=0.031 Score=58.24 Aligned_cols=201 Identities=14% Similarity=0.082 Sum_probs=124.1
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (721)
Q Consensus 414 ~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg 493 (721)
|+.-++.-|....+.|++.+|+..|++..+.+|..++. ++ +...++.+++..+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~q-------------------------a~l~l~yA~Yk~~ 85 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQ-------------------------AQLDLAYAYYKNG 85 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HH-------------------------HHHHHHHHHHhcc
Confidence 44445555666678888888888888877777755544 22 3345667888888
Q ss_pred CHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 004984 494 NVEAALAEINRILGFKLA-L---ECLELRFCFFL--------ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~--------~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l 561 (721)
++++|+..+++=|.+.|+ + ..++.+|..+. ...--.+|+.+|+..++.=|+.... .-+......+
T Consensus 86 ~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---~dA~~~i~~~ 162 (254)
T COG4105 86 EYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---PDAKARIVKL 162 (254)
T ss_pred cHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---hhHHHHHHHH
Confidence 999999999999988884 2 23456775533 2333467888899999998885321 0111111111
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---Ch
Q 004984 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DH 638 (721)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ 638 (721)
... |+-.+- ..|..+.+-|-+.+|+.-++..++--|+ -.
T Consensus 163 ~d~-------------------------LA~~Em-------------~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 163 NDA-------------------------LAGHEM-------------AIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred HHH-------------------------HHHHHH-------------HHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 111 111111 2334556666666666666666665444 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (721)
+++..+..+++.+|-.++|= ...+.|..+...-.|.--+|.+..
T Consensus 205 eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 205 EALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQ 248 (254)
T ss_pred HHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhccc
Confidence 67777777788888888875 666777765544456666655543
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0025 Score=65.46 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=94.9
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~ 494 (721)
..++...|+-++.+|++.+|...|..||..-.+ ++-+-+- ++. .=++|+...+..+.|...++...|+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~----L~lkEkP--~e~------eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN----LQLKEKP--GEP------EWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH----HHhccCC--CCh------HHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 455677888899999999999999988865311 0001000 011 1234455556788999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
|-|+++..+.+|...|. ..+++.||-++...=+.++|.+||.++++++|.-.
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 99999999999999996 78888999999999999999999999999999963
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00028 Score=49.71 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
+++++++|.+++.+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467888888888888888888888888888886
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.35 Score=53.16 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=199.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--cchhhHh--hHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHhh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIA--GLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSL 457 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~--~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~rg~ 457 (721)
.-.|.+..-.|+-..|.+.=.++-++ .....+. .-+..-..-|+++.|.+-|+..+ .+|. +--.|.+-..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHHHHhHHHHHHHHHh
Confidence 35688888889999998888776544 2222222 23556677899999999998544 3443 2344555445
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH------HHhcCCHH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF------FLALEDYQ 529 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~-~~R~~~------~~~lgd~e 529 (721)
.|..+-|..+-++|-+..|....++...=....+.|+.++||.-.+...+-.- ..+.. ..|+.+ -.---|..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 57779999999999999999999999998999999999999998876655322 11111 112211 22335688
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHH
Q 004984 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYF 608 (721)
Q Consensus 530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~ 608 (721)
.|..+-..+.+|.|++..+. .........- ++.+ +-.+++.+...+|--..+
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaa------v~AAralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia-- 299 (531)
T COG3898 247 SARDDALEANKLAPDLVPAA------VVAARALFRD-------------------GNLRKGSKILETAWKAEPHPDIA-- 299 (531)
T ss_pred HHHHHHHHHhhcCCccchHH------HHHHHHHHhc-------------------cchhhhhhHHHHHHhcCCChHHH--
Confidence 99999999999999995421 1111011111 2222 245789999998864332
Q ss_pred HHHHHHHHcCChHHHHHHHHHH---HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccC
Q 004984 609 RQSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (721)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~A---l~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~ 685 (721)
+.++..+-| +-++.-+++| -.+.|+|.+........-++-|+|-.|-...|.++.+.|.=-+|.|.|-.=+-..
T Consensus 300 -~lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 300 -LLYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET 376 (531)
T ss_pred -HHHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence 222334444 3455555554 4568999999999999999999999999999999999999889988875543222
Q ss_pred CCCCchhhHHHHHHHhhcCCCC
Q 004984 686 QDSSCSSTVVSLLEDALKCPSD 707 (721)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~ 707 (721)
=| --.|-+.|-.|+|-|-|
T Consensus 377 GD---qg~vR~wlAqav~APrd 395 (531)
T COG3898 377 GD---QGKVRQWLAQAVKAPRD 395 (531)
T ss_pred Cc---hHHHHHHHHHHhcCCCC
Confidence 23 34799999999999977
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.33 E-value=0.05 Score=63.71 Aligned_cols=270 Identities=14% Similarity=0.013 Sum_probs=175.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHh-----CCHHHHHHHHHHHHh-------c-----CCCcH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVIS-------S-----VTPLG 449 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~-----G~~~~A~~~~~~aI~-------~-----~~~~~ 449 (721)
...|......++..+|..+|+.+-+.++..+...+|.+++.- .+.+.|+.++..+.+ . .-.+|
T Consensus 216 ~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 216 EGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred cccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence 344444445556789999999999999999999999877753 589999999999887 2 22478
Q ss_pred HHHHHHhhcC--ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 004984 450 WMYQERSLYC--EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA 524 (721)
Q Consensus 450 ~ay~~rg~~~--~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~ 524 (721)
.+|.+..... ..+.|+..|.+|-++.. +.+.+.+|.++..-. ++..|...|.+|...- ...+.+..+.+ ..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~-y~ 371 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALC-YE 371 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHH-HH
Confidence 8888774322 45889999999988754 567788888888766 5689999999999432 23433333333 33
Q ss_pred cC-----CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH--HHHHH-
Q 004984 525 LE-----DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS--VIYQM- 596 (721)
Q Consensus 525 lg-----d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~--~~~qa- 596 (721)
+| +.+.|...|.+|.+.++=..+ -+..+....+ +..++.+.. ...+.++-.++...+.+ +.++-
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g~~~A~--~~~~~~~~~g-----~~~~~~~~~-~~~~~a~~g~~~~q~~a~~l~~~~~ 443 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKGNPSAA--YLLGAFYEYG-----VGRYDTALA-LYLYLAELGYEVAQSNAAYLLDQSE 443 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHccChhhH--HHHHHHHHHc-----cccccHHHH-HHHHHHHhhhhHHhhHHHHHHHhcc
Confidence 34 899999999999999932211 1222222222 133333321 12222222222111011 11111
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---C-CHHHHHHHHHHHHhcCCCHH
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---S-HCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~---G-~~deAl~~ye~Ai~i~~~~~ 672 (721)
..+.+.. .....+.|...+.++... .+.+|...+|.+++.- + +++.|...|.+|-... -.
T Consensus 444 ~~~~~~~------------~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~ 507 (552)
T KOG1550|consen 444 EDLFSRG------------VISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQ 507 (552)
T ss_pred ccccccc------------cccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hH
Confidence 0000000 023566777777777654 4788999999999886 4 4999999999999888 55
Q ss_pred HHHHHHHHhhcc
Q 004984 673 AFFLKAYALADS 684 (721)
Q Consensus 673 a~~~~~~~~~~~ 684 (721)
+.|+-||-..=.
T Consensus 508 ~~~nlg~~~e~g 519 (552)
T KOG1550|consen 508 ALFNLGYMHEHG 519 (552)
T ss_pred HHhhhhhHHhcC
Confidence 999999987643
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.33 E-value=0.21 Score=54.77 Aligned_cols=248 Identities=13% Similarity=0.068 Sum_probs=174.4
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhhHhhHHH---HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChh
Q 004984 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR---LGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGD 462 (721)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~---~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~ 462 (721)
+..-..-|+|++|.+-|+.-+.-.... ..||-. --..+|+.+.|..+-.++-+.-|.+.|+.... -.-|+.+
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDDPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 445556799999999999876543222 233322 23568999999999999999999999987543 3456779
Q ss_pred HHHHHHHHHH---hcCCCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004984 463 KRWEDLDKAT---ALDPTLSY-----PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 463 eAl~d~~kAi---eLdP~~~~-----ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~ 533 (721)
+|+.-.+... .+.|+-++ .....+..+.+. +...|..+-..+++++|+ ......-+.++.+.|+..++-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 9988665433 34454332 222344444444 477899999999999998 4556666778899999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (721)
Q Consensus 534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (721)
-++.+.+.+|.-.-+ .+|....+-|-.- -+.-..+--++-|++.+..+..+.
T Consensus 285 ilE~aWK~ePHP~ia---------------------------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 285 ILETAWKAEPHPDIA---------------------------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred HHHHHHhcCCChHHH---------------------------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999999999985221 1222211111110 122234445678999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~i 667 (721)
.-+.-|.+-.|..-.+.+.+..|... ++.-++-| --.+|+-.+.-+..-|+++-
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999965 44444444 34569999999999898874
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.028 Score=57.64 Aligned_cols=123 Identities=15% Similarity=0.025 Sum_probs=90.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHH------HHhhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQ------ERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRAS 487 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~------~rg~~-----~~~~eAl~d~~kAieLdP~~------~~ay~~rg~ 487 (721)
.++.+++.+|+.++.++|+++.+.|..-. ..|.+ .+.+.||.+|++|-+--... -..+...|.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 46778999999999999998776554333 33433 23378888888887654332 245566777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 488 SLMTKQNVEAALAEINRILGFKLAL-------ECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 488 ~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
.-..+++|.+||..|.++.....+. ..+.. -|.+++..+|.-.|-..+++-.+++|.+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 7788999999999999998864431 22333 456888889999999999999999999854
No 238
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.30 E-value=0.014 Score=71.81 Aligned_cols=223 Identities=12% Similarity=0.072 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--HHHHHH---HHHHHHhcCCHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA--LECLEL---RFCFFLALEDYQAALCDV 535 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~--~~~~~~---R~~~~~~lgd~eeAl~d~ 535 (721)
.+-.+||++-+.-+|+.+..|++-=.-..+++..++|-+.+.|||. +|+. .+.++. .-.+-..-|.-+.-.+-|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3445788888888888888888877788888888888888888886 5663 232222 222344456666666677
Q ss_pred HHHHhhCCCchhhh------hhHH-HHHHHHHHHHhhhhhh-HHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--Ch
Q 004984 536 QAILTLSPDYRMFE------GRVA-ASQLHMLVREHIDNWT-IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KG 604 (721)
Q Consensus 536 ~kal~L~P~~~~~~------~~~~-a~~~~~~l~~~~~~~~-~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~--~~ 604 (721)
++|-+...-|.-+. -+.+ ....-..++..+..+. +-..|....+.+-+.++.+ |-.++.+||..-|. +.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 77776554432110 0000 0000001111111111 2233444444444444433 23355555555555 44
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHhh
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLKAYALA 682 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~--~~a~~~~~~~~~ 682 (721)
+.----+.+-++.|+.+.+...+.--+.-.|.-.+.+...--.-.+.|+-+-.-..|||+|.+.=+ -.=||.|=|.-+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555555556666666666666665333 334444444443
Q ss_pred cc
Q 004984 683 DS 684 (721)
Q Consensus 683 ~~ 684 (721)
.+
T Consensus 1681 Ek 1682 (1710)
T KOG1070|consen 1681 EK 1682 (1710)
T ss_pred HH
Confidence 33
No 239
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.019 Score=58.82 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHHhc-----c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---CChhHH
Q 004984 396 RKEYDEAEHLFEAAVNA-----G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CEGDKR 464 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~-----~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---~~~~eA 464 (721)
.+.|+||.+.|.+|-.. + -.+++...+..+.+.|...+| |..|..-++. .+.++|
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa--------------at~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA--------------ATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH--------------HHHHHHHHHHhhccChHHH
Confidence 35899999999887433 0 112222233334444433333 3344443322 233888
Q ss_pred HHHHHHHHhcCCCCh------HHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 004984 465 WEDLDKATALDPTLS------YPYMYRASSLMTK-QNVEAALAEINRILGF 508 (721)
Q Consensus 465 l~d~~kAieLdP~~~------~ay~~rg~~l~~l-g~~~eAl~~~~kAL~l 508 (721)
+.++++||++-.+-. ..++.+|.+|-.. .+++.||..|+.|-+.
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 888888887543332 1222344444332 4455555555555443
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.079 Score=58.61 Aligned_cols=198 Identities=13% Similarity=-0.092 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHH---hCCHHHHHHHHHH-HHhcCCCcHHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYI---KGHKLWAYEKLNS-VISSVTPLGWMY 452 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~---~G~~~~A~~~~~~-aI~~~~~~~~ay 452 (721)
....+++=.+|-...+|+.=++..+..=.+ ++...-+..|.++.+ .|+.+.|+..+.. .....++.+.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344466667787888888777777753333 112222344555555 6777777777766 333445566666
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl 532 (721)
--.|.+ .-+..++-++++.. ..++|+..|.|+.+++|+.....|.+.++...|.-.+..
T Consensus 221 gL~GRI--------yKD~~~~s~~~d~~-------------~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI--------YKDLFLESNFTDRE-------------SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH--------HHHHHHHcCccchH-------------HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence 666554 01112222222221 167777777777777776655666666666666433333
Q ss_pred HHHHHHH-hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 004984 533 CDVQAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (721)
Q Consensus 533 ~d~~kal-~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g 611 (721)
...+++. +++ ......+.+......|+-| ..+
T Consensus 280 ~el~~i~~~l~----------~llg~kg~~~~~~dYWd~A-------------------------------------Tl~ 312 (374)
T PF13281_consen 280 EELRKIGVKLS----------SLLGRKGSLEKMQDYWDVA-------------------------------------TLL 312 (374)
T ss_pred HHHHHHHHHHH----------HHHHhhccccccccHHHHH-------------------------------------HHH
Confidence 2222222 110 0011122233333344444 244
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L 648 (721)
.+..-.|+++.|...+++++++.|..-+..-+.+.+.
T Consensus 313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 313 EASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 5556678888888888888888887766555555543
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.24 E-value=0.00061 Score=47.98 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
+.+|+.+|.++..+|++++|+..+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.081 Score=53.09 Aligned_cols=82 Identities=23% Similarity=0.168 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
++|...++.++..-.|. +-+-.++|.++.++|++++|+..++..- +++. .....||.++...||-++|...|.
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 66666666666443332 2345678999999999999999998876 5553 335779999999999999999999
Q ss_pred HHHhhCCCc
Q 004984 537 AILTLSPDY 545 (721)
Q Consensus 537 kal~L~P~~ 545 (721)
++++.+++.
T Consensus 184 kAl~~~~s~ 192 (207)
T COG2976 184 KALESDASP 192 (207)
T ss_pred HHHHccCCh
Confidence 999998775
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.075 Score=55.47 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-----CChhHHHHHHHHHH
Q 004984 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-----CEGDKRWEDLDKAT 472 (721)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~-----~~~~eAl~d~~kAi 472 (721)
+|.++..+|+..|..+ ..-..|++....+|.++|.+-..|+-|-.+ .+..+-++.++..+
T Consensus 41 ~fr~~m~YfRAI~~~~---------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~ 105 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKN---------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII 105 (318)
T ss_pred hHHHHHHHHHHHHhcc---------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4666666666554442 334556777788999999877777666332 22377788899999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVE-AALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~-eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~ 550 (721)
+-+|.+.+.|..|-.+.-.+|++. .=++...++|..+. +..+|..|-|+....++++.=+......|+.|--|
T Consensus 106 e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N----- 180 (318)
T KOG0530|consen 106 EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN----- 180 (318)
T ss_pred HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----
Confidence 999999999999999999999988 78899999998877 47888999999999999999999999999988644
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch-------HHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS-------LSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a-------l~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
=.+|.+.|..+....+.-+ +...-.+|.+-|+|-.+|+.+.-++..
T Consensus 181 --------------------NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 --------------------NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --------------------cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1357777777777544432 346778899999999999988877775
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0014 Score=69.80 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRF-CFFLALEDYQAALCDVQ 536 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~-~~~~~lgd~eeAl~d~~ 536 (721)
..|...|++.|.-.-.+ +-.|.|||.+...+|+|..||.|..+|+.++|..-..+.|+ .++.++.++++|+.+++
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 55555555555543222 34578888888888888888888888888888755556665 48888888888888888
Q ss_pred HHHhhCCCc
Q 004984 537 AILTLSPDY 545 (721)
Q Consensus 537 kal~L~P~~ 545 (721)
..+.++-..
T Consensus 178 e~~~~d~e~ 186 (390)
T KOG0551|consen 178 EGLQIDDEA 186 (390)
T ss_pred hhhhhhHHH
Confidence 877776554
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.12 E-value=0.03 Score=63.07 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
+.+.-++|+.+||++.|+..++..|.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 44555666666666666666665554
No 246
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00041 Score=74.30 Aligned_cols=120 Identities=21% Similarity=0.145 Sum_probs=100.6
Q ss_pred CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHH---HHHHHhhhcC
Q 004984 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (721)
Q Consensus 190 ~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~---~LL~aAd~~~ 266 (721)
+..+.+|+.+++++|+.|++|+..+..+.....+++.+ .++..++.+..|.|+..-. ...+.+. .++.++.+++
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 56699999999999999999999988777777778875 9999999999999997654 3444554 8889999999
Q ss_pred hhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHh
Q 004984 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR 313 (721)
Q Consensus 267 v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~ 313 (721)
...++..|...+.+.+. ..++..++..+..+....+...|..++..
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 99999999999999985 56666777788877777888888877654
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.024 Score=60.12 Aligned_cols=156 Identities=16% Similarity=0.061 Sum_probs=100.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 004984 486 ASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (721)
Q Consensus 486 g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (721)
|.-.++.|++.+|...|..++...|+ .+.....+.+|...|+.++|..-+...-.-..+. ... + +...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~--~-l~a~ 209 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAH--G-LQAQ 209 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHH--H-HHHH
Confidence 34455666677777777777777664 4444555666777777766655444322222221 000 0 1222
Q ss_pred hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHH
Q 004984 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLV 642 (721)
Q Consensus 565 ~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~ 642 (721)
++...+| ...+ -...+.+.+..||++.++.+-.|..+...|++++|++.+=..++.+-. +.++.-
T Consensus 210 i~ll~qa----------a~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 210 IELLEQA----------AATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHH----------hcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 2222333 1222 245789999999999999999999999999999999998888877554 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004984 643 YEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 643 ~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
.+=.++.-.|.-|.+.-.|+|=+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 277 TLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 66667777787777777777643
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.028 Score=60.30 Aligned_cols=185 Identities=11% Similarity=-0.004 Sum_probs=133.7
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhH--hhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~--~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.-.+.+.++.++.-+..+.....-.|.-..+...+|++.+|...+++.++--|.+-. -.--.+++..|+...-...+
T Consensus 81 s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai 160 (491)
T KOG2610|consen 81 SNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAI 160 (491)
T ss_pred chhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHH
Confidence 3345556666666544444332333455566677889999999999999888666643 23345788889988888888
Q ss_pred HHHHhc-CCCcHHHHHHHhh-------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 439 NSVISS-VTPLGWMYQERSL-------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (721)
Q Consensus 439 ~~aI~~-~~~~~~ay~~rg~-------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P 510 (721)
.+.|.. +++.+..-|-.|. +|.+++|-+.-++|+++||.+..+....+-++.+.||+.|+.+...+--..=-
T Consensus 161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr 240 (491)
T KOG2610|consen 161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR 240 (491)
T ss_pred HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence 888887 7776554444443 35669999999999999999999999999999999999999998877542211
Q ss_pred C---HHH--HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCc
Q 004984 511 A---LEC--LELRFCFFLALEDYQAALCDVQAILT--LSPDY 545 (721)
Q Consensus 511 ~---~~~--~~~R~~~~~~lgd~eeAl~d~~kal~--L~P~~ 545 (721)
+ ..+ |..-+.++++.+.|+.|+.-|++-+- ++.++
T Consensus 241 ~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 241 QSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 1 112 22356789999999999999987653 55555
No 249
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0029 Score=67.50 Aligned_cols=75 Identities=23% Similarity=0.141 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFK---LA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~ 553 (721)
+.-|..=|+=|+.-++|..|+..|.+.|+-+ |+ .-+|.||+.+...+|+|-.||.|+.+|+.++|.+.-++.|++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5677888999999999999999999999974 54 345778999999999999999999999999999966555554
No 250
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.00 E-value=0.14 Score=61.07 Aligned_cols=217 Identities=12% Similarity=-0.006 Sum_probs=139.5
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHhhcCChhHHH
Q 004984 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRW 465 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~-------~ay~~rg~~~~~~eAl 465 (721)
..++++.|.+...+.++. +-.+|...-|.++.++|+.++|...++..-...++.- ..|...+.+ ++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~---d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL---DEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh---hHHH
Confidence 456788888888888877 4456667778889999999999977765545555433 233334444 9999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHhcCC---------HHHHHHH
Q 004984 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LELRFCFFLALED---------YQAALCD 534 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~--~~~R~~~~~~lgd---------~eeAl~d 534 (721)
..|++|+.-+|+ -+-.+.+-.+|.+-+.|.+--..-=+.-+.-|+... |..--.+...... ..-|.++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999999999 788888888888888876533332222234464222 2222222222222 2335667
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH--HHHHHhCCCChhHHHHHHH
Q 004984 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI--YQMLESDAPKGVLYFRQSL 612 (721)
Q Consensus 535 ~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~--~qaL~l~P~~~~~~~~~g~ 612 (721)
+++.++.. .... -.+-..+.-.+...+..|++| +.++ ..|=.+-+.+..+-+..+.
T Consensus 177 ~~~~l~~~-gk~~---s~aE~~Lyl~iL~~~~k~~ea------------------l~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 177 VQKLLEKK-GKIE---SEAEIILYLLILELQGKYQEA------------------LEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHhccC-Cccc---hHHHHHHHHHHHHhcccHHHH------------------HHHHHHHHHHhccccchHHHHHHHH
Confidence 77777776 3211 111222333344555556666 4433 4444555666666677788
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
.+..++++.+=.+...+++.-+||+
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc
Confidence 8888999999999999999999998
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.069 Score=59.04 Aligned_cols=163 Identities=16% Similarity=0.095 Sum_probs=109.1
Q ss_pred CchhHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHh---ccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQR-LLAFHQLGCVRLL---RKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLW 433 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~-~la~~~lG~~~~~---~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~ 433 (721)
..+..+.|.|.+...|.....+ ...-++.+.++-+ .|+.++|...+.+++... ..+.+--+||+|-.+
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~----- 230 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL----- 230 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-----
Confidence 4567777777766665332222 2333556666666 799999999999977762 344555677776522
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004984 434 AYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL------- 506 (721)
Q Consensus 434 A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL------- 506 (721)
.++....... ..++|+..|.|+.+++| +.++=.|.+.++.-.|...+.-.+.+++.
T Consensus 231 -------~~~s~~~d~~---------~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 231 -------FLESNFTDRE---------SLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred -------HHHcCccchH---------HHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 1111111100 03999999999999996 55788889999998888666665555544
Q ss_pred h----cCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 507 G----FKLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 507 ~----l~P~~~~~~~--R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
. +.+..+.|.. ++.+..-.||+++|++.+++++++.|..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1 1122344432 4567888999999999999999999886
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.85 E-value=0.0023 Score=48.47 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
++++..+|.++..+|++++|.+.|+++++.+|++. +++..|
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46889999999999999999999999999999998 887765
No 253
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.15 Score=60.24 Aligned_cols=141 Identities=12% Similarity=-0.070 Sum_probs=70.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH----------hcCCCcHHHHHHH-
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI----------SSVTPLGWMYQER- 455 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI----------~~~~~~~~ay~~r- 455 (721)
-.+...|...|.+++|.+.-+.-=.+.-...|++.|.-+..+||...|++.|+++- ..+|+.-.-|.++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 34455555566666665533321111112234555666666777777777776432 2234333333333
Q ss_pred ---------hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004984 456 ---------SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (721)
Q Consensus 456 ---------g~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (721)
|.| |..+.|+..|.+|-. |+.+--++.-+|+.++|-...+. .-+-.+-|..+.-|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLARMY 977 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHHHHh
Confidence 222 344667766665532 44444455555555555433322 11222224455566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004984 523 LALEDYQAALCDVQAIL 539 (721)
Q Consensus 523 ~~lgd~eeAl~d~~kal 539 (721)
...|++.+|+.-|.+|-
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 77777777776666543
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.039 Score=52.41 Aligned_cols=100 Identities=19% Similarity=0.104 Sum_probs=65.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~--------~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
....|+...++..+.+++.++. ...|+...|..+ .+. ...+...++..+.+.|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l---~~~-------------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL---REL-------------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH---HHH-------------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHhccCHH
Confidence 3445666666666666666542 124444444332 111 2345667788889999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+|+..+++++.++|- -..+...-.+|..+|+..+|++.|++..+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999995 45555667789999999999999888754
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.047 Score=51.87 Aligned_cols=61 Identities=26% Similarity=0.091 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+...++..+...|++++|++.+++++.++|.+-.++..+-.++..+|+..+|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455777888999999999999999999999999999999999999999999999998743
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.026 Score=58.73 Aligned_cols=137 Identities=13% Similarity=0.047 Sum_probs=93.3
Q ss_pred hHHHHHHHHH--HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc----CCC
Q 004984 377 ETDRQRLLAF--HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTP 447 (721)
Q Consensus 377 ~~~lq~~la~--~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~----~~~ 447 (721)
...|++.... |.+..++.-.|+|.-....+.+.|+.++ +....++|++..+-||.+.|-..|.+.-+. +.-
T Consensus 169 v~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 169 IRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3455554333 5666667778999999999999998852 223567999999999999997777633321 111
Q ss_pred cHHHHHHH--hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 448 LGWMYQER--SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (721)
Q Consensus 448 ~~~ay~~r--g~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~ 513 (721)
-+.+...+ ..+ +.+.+|...|++.++.||.++.+-++.|.+++-+|+..+|+..+..+++..|.+.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 11111111 110 2237777788888888888888888888888888888888888888888887643
No 257
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.62 E-value=0.067 Score=49.50 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=68.9
Q ss_pred HHHHHH--HHHHHhccchHHHHHHHHHHHhcc----------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 004984 384 LAFHQL--GCVRLLRKEYDEAEHLFEAAVNAG----------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (721)
Q Consensus 384 la~~~l--G~~~~~~g~y~eA~~~f~~AL~~~----------~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~ 447 (721)
.+|.-| |.-.++-|.|++|...+++|++.. | +..+.+|+.++..+|++++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 344333 444556689999999999998761 1 22477889999999999999876544332
Q ss_pred cHHHHHHH-hhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 448 LGWMYQER-SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 448 ~~~ay~~r-g~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
|+|| |.+.+-++.+. ..+.++||.++..+|+.+||+..|+++-+.
T Consensus 84 ----YFNRRGEL~qdeGklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 84 ----YFNRRGELHQDEGKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ----HHHHH--TTSTHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ----HHhhccccccccchhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3332 44433333321 235578999999999999999999998753
No 258
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.58 E-value=0.0032 Score=44.42 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
++++.+|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445555555555555555555555555554
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.49 E-value=0.0044 Score=43.65 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3679999999999999999999999999999964
No 260
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.46 E-value=0.0022 Score=66.20 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=54.5
Q ss_pred CCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC
Q 004984 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN 248 (721)
Q Consensus 178 ~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~ 248 (721)
.....||-++.....|++||.+||+++|+|+.+.+++-.-......++.--|++-++|..+|.|+|||+..
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc
Confidence 33446888888899999999999999999999988754222222222332369999999999999999876
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.46 E-value=0.2 Score=53.22 Aligned_cols=157 Identities=13% Similarity=-0.037 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhc----cchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 004984 385 AFHQLGCVRLLR----KEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLG-WMYQER 455 (721)
Q Consensus 385 a~~~lG~~~~~~----g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~A~~~~~~aI~~~~~~~-~ay~~r 455 (721)
+...+|..+... .+..+|..+|..+.+.++..+.+.+|.++.. ..|..+|..+|++|.......+ .+.+..
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l 154 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 444555555443 4688999999999999999999999998876 4489999999999998855443 222222
Q ss_pred hhc---C--------ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004984 456 SLY---C--------EGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFC 520 (721)
Q Consensus 456 g~~---~--------~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~ 520 (721)
|.. + ....|+..|.+|-++. +..+..++|..|.. ..++++|+.-|.+|-+... ....++.+
T Consensus 155 ~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~- 230 (292)
T COG0790 155 GLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG- 230 (292)
T ss_pred HHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-
Confidence 210 1 1247888999998888 88999999988865 3478999999999998877 55556666
Q ss_pred HHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 004984 521 FFLALE---------------DYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 521 ~~~~lg---------------d~eeAl~d~~kal~L~P~~ 545 (721)
++...| +...|...++++-...+..
T Consensus 231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 444444 8889999999998888775
No 262
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.36 E-value=1 Score=47.70 Aligned_cols=206 Identities=12% Similarity=0.013 Sum_probs=123.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHH
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d 467 (721)
..+......+.+..|...|.++-..+...+...+|..+..-.. ......+|+..
T Consensus 46 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~g--------------------------v~~~~~~A~~~ 99 (292)
T COG0790 46 LNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKG--------------------------VSRDKTKAADW 99 (292)
T ss_pred cccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccC--------------------------ccccHHHHHHH
Confidence 3444555677888888888887665444444444443332111 01112556666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 468 LDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-AL-ECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P-~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
|. ...+..++.+.+++|.+|.. ..++.+|...|++|....- .. ...+..+..+..-+ .+ ...
T Consensus 100 ~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~---------~~~ 167 (292)
T COG0790 100 YR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA---------LAV 167 (292)
T ss_pred HH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh---------hcc
Confidence 65 33455666777778887776 4477788888888876532 21 22333444333221 00 000
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----c
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----L 617 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----l 617 (721)
..+ ... |+..+.+|-+.. ++.+.++.|.++.. -
T Consensus 168 ~~~-----------------------~~~------------------A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 168 AYD-----------------------DKK------------------ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cHH-----------------------HHh------------------HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 000 001 233444444443 67778888877755 3
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---------------HCEEGLRKAEESIQMKRSFEAFFLK 677 (721)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G---------------~~deAl~~ye~Ai~i~~~~~a~~~~ 677 (721)
.++++|..+|++|-+... ..+.++.| ++|..| +...|...+.++....+...-.-++
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 477899999999999997 89999999 888877 7777888888887776665533333
No 263
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.72 Score=48.50 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHhhc-
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSLY- 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~rg~~- 458 (721)
..-.-|.++..-|++++|.+...+- ....+...--.+..+..+.+-|.....+...++-+ ++.+|.+..--
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence 3344578888999999998877651 22333333344677778888888888888777653 77888877321
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH-HH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD-VQ 536 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d-~~ 536 (721)
...++|.-.|+.--+--|-.+...+..+.+.+.+||++||...+..||.-+++ |+.+.|.-.+-..+|.-.++... ..
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 23488998999998877778889999999999999999999999999999996 88888887776777777666655 45
Q ss_pred HHHhhCCCch
Q 004984 537 AILTLSPDYR 546 (721)
Q Consensus 537 kal~L~P~~~ 546 (721)
+....+|.++
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6666778874
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.31 E-value=0.56 Score=50.77 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=109.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhh
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMF 548 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-----~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~ 548 (721)
.......|...+.+....|+++-|...+.++..+++ .+......+-++-..|+..+|+...+..+.-.... ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 777788999999999999999999999999998763 23444556778889999999999999999832221 000
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA 622 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee 622 (721)
........ +.+. . ++. ...-..--......+.++..+|.-...+ +..++
T Consensus 222 ~~~~~~~~--~~~~----~----------~~~---------~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 ISNAELKS--GLLE----S----------LEV---------ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred ccHHHHhh--cccc----c----------ccc---------ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00000000 0000 0 000 0000000001111235566677777777 88889
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q 004984 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHC-----------------EEGLRKAEESIQMKRS 670 (721)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~-----------------deAl~~ye~Ai~i~~~ 670 (721)
++..|+.|+.++|+...+++..|......-.. ..|+..|=+|+.+.+.
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998888888876655322 2366666666666665
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.51 Score=49.03 Aligned_cols=159 Identities=14% Similarity=0.001 Sum_probs=78.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-----CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhhhhhHHHHH
Q 004984 486 ASSLMTKQNVEAALAEINRILGFK-----LALEC-LELRFCFFLALEDYQAALCDVQAILTLSPDY---RMFEGRVAASQ 556 (721)
Q Consensus 486 g~~l~~lg~~~eAl~~~~kAL~l~-----P~~~~-~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~---~~~~~~~~a~~ 556 (721)
|..+.++..+.|+...|+||..+. |++.+ ..-++.=..+.-+.++|+.-|++++.+=-+. .|++ ....
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---el~g 154 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---ELYG 154 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---HHHH
Confidence 445555666666666666666552 33211 1224444456667778888888877753322 1111 1112
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 004984 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--- 633 (721)
Q Consensus 557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--- 633 (721)
..+.+.-.++.+++|.. .+.+ ......-+..-|....++...-++++-.+++..|...|+.--++
T Consensus 155 k~sr~lVrl~kf~Eaa~---a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAAT---AFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HhhhHhhhhHHhhHHHH---HHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 22223333444444421 1111 11222233333444445544445555566888888888875443
Q ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984 634 -AASDHERLVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 634 -~P~~~ea~~~~G~~Ly~~G~~deAl~~ 660 (721)
.|++..++-++ +--|+.|+.|+.-..
T Consensus 223 ~~sed~r~lenL-L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 223 LKSEDSRSLENL-LTAYDEGDIEEIKKV 249 (308)
T ss_pred cChHHHHHHHHH-HHHhccCCHHHHHHH
Confidence 34444444333 335777887776543
No 266
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.25 E-value=0.32 Score=56.78 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHcCChHHHHHH------HHHHHH-----hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------C
Q 004984 613 LLLRLNCPEAAMRS------LQLARQ-----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-----------S 670 (721)
Q Consensus 613 ~L~~lg~~eeAl~~------~~~Al~-----l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-----------~ 670 (721)
+|-+.|-.++|+.. |+-|.. ..-..++.|..++.-|-+.|++++|-..|-+||+++- .
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsr 1038 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSR 1038 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccch
Confidence 34446666666643 222322 2345788999999999999999999999999999863 3
Q ss_pred HHHHHHHH
Q 004984 671 FEAFFLKA 678 (721)
Q Consensus 671 ~~a~~~~~ 678 (721)
|++-|+|+
T Consensus 1039 fd~e~ir~ 1046 (1636)
T KOG3616|consen 1039 FDAEFIRA 1046 (1636)
T ss_pred hhHHHHHc
Confidence 56767765
No 267
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.22 E-value=0.6 Score=58.33 Aligned_cols=235 Identities=13% Similarity=0.079 Sum_probs=175.7
Q ss_pred chHHHHHHHHHHHhccchhhHhhHH--HHHHHhCCHHHHHHHHHHHHhc-CC-------CcHHHHHHHhh-cCChhHHHH
Q 004984 398 EYDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKGHKLWAYEKLNSVISS-VT-------PLGWMYQERSL-YCEGDKRWE 466 (721)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~A~~~lg--~~~~~~G~~~~A~~~~~~aI~~-~~-------~~~~ay~~rg~-~~~~~eAl~ 466 (721)
+-.+-.++|++-+.-.|..+...+- --+.++++.++|.+...+|+.- ++ |...||.|.-. ||..+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3444567898888777766644332 2356789999999999998863 33 45677888744 554556667
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
-|++|-+.+-- .-.|..+.-+|..-+++++|.+.++..++ +.-....|...+.+++...+-++|-.-+.+|++--|..
T Consensus 1519 VFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 89999886543 34778899999999999999999999997 44346778778889999999999999999999999983
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (721)
.+++...+. +++-.+....++ .-..++--|.-.|.-.++|.-....-.+.|..+-+..
T Consensus 1598 -----------------eHv~~Iskf---AqLEFk~GDaeR--GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1598 -----------------EHVEFISKF---AQLEFKYGDAER--GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred -----------------hhHHHHHHH---HHHHhhcCCchh--hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence 344555554 244444333333 4668999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChh-HHHHHHHHHHhcCCHH
Q 004984 626 SLQLARQHAASDHE-RLVYEGWILYDTSHCE 655 (721)
Q Consensus 626 ~~~~Al~l~P~~~e-a~~~~G~~Ly~~G~~d 655 (721)
.|+|++.+.=.=.. -.++.=|+-|...+=+
T Consensus 1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99999988754333 3455667766654333
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.14 Score=55.21 Aligned_cols=84 Identities=14% Similarity=0.034 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHH-HHHH---HHHHhcCCHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLALECL-ELRF---CFFLALEDYQAALCDVQ 536 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-~P~~~~~-~~R~---~~~~~lgd~eeAl~d~~ 536 (721)
-+|-...+|.+.--|++--++..--.++.-.|+...-...++|+|-. +|+.+++ |..| ..+.+.|-|++|...-+
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD 199 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence 77777788888888999888888888888889999999999999987 7775444 3333 46788888888888888
Q ss_pred HHHhhCCCc
Q 004984 537 AILTLSPDY 545 (721)
Q Consensus 537 kal~L~P~~ 545 (721)
+++++||.+
T Consensus 200 ralqiN~~D 208 (491)
T KOG2610|consen 200 RALQINRFD 208 (491)
T ss_pred hhccCCCcc
Confidence 888888776
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.18 E-value=0.11 Score=59.70 Aligned_cols=116 Identities=15% Similarity=0.002 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHH
Q 004984 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALA 500 (721)
Q Consensus 429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~----~~ay~~rg~~l~~lg~~~eAl~ 500 (721)
++...|.+.+....+.+|+.+..+..+|++ ++.++|++.|++|++...+. ...+..+|..++-++++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 455566677777777777776666666653 44577777777777544333 3467779999999999999999
Q ss_pred HHHHHHhcCCCHH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC
Q 004984 501 EINRILGFKLALE--CLELRFCFFLALEDY-------QAALCDVQAILTLSPD 544 (721)
Q Consensus 501 ~~~kAL~l~P~~~--~~~~R~~~~~~lgd~-------eeAl~d~~kal~L~P~ 544 (721)
.|.+.++.+.-.. ..|..|.++..+|+. ++|...|+++..+-..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999998766433 345688899999999 8888888888776553
No 270
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.14 E-value=0.37 Score=57.11 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
||.+-.++.-+|+.++|-++.+ ...|--|-|.+|--|-..|++.+|+..|.||-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4555555555666665544333 345666889999999999999999999888744
No 271
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.08 E-value=0.0078 Score=39.84 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45667777777777777777777777777665
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.98 E-value=1.9 Score=46.53 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=99.9
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-CC-----
Q 004984 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDA----PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AA----- 635 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P----~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-~P----- 635 (721)
..+.+.+|++....-...+.+. |...+.++...++ ..+...+-.+.++...|+.++|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3444556666666555556565 5667888877652 25677888999999999999999999999881 11
Q ss_pred ----------------------------CChhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984 636 ----------------------------SDHERLVYEGWILYDT------SHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (721)
Q Consensus 636 ----------------------------~~~ea~~~~G~~Ly~~------G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (721)
.-+.++.-+|.....+ +..++++..|.+|++++|+.+ +|+.-|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1234566666666677 999999999999999999888 88776654
Q ss_pred hhcc-CCCCCch-----hhHHHHHHHhhcCCCCccccccc
Q 004984 681 LADS-SQDSSCS-----STVVSLLEDALKCPSDRLRKGTE 714 (721)
Q Consensus 681 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 714 (721)
...- ..|+... ....+.+..|++|=--.|+-|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 4322 2222111 25666666666665444555543
No 273
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.94 E-value=0.027 Score=50.90 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=60.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHhhhhccCCCC-------------
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN------------- 248 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~------------- 248 (721)
|+|+- +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+ +|+..+|+.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56655 788999999966 68999999997643222 22578888 59999999999999853211
Q ss_pred -----CCCHHHHHHHHHHhhhcCh
Q 004984 249 -----GVTPNLLLEILIFANKFCC 267 (721)
Q Consensus 249 -----~i~~~~v~~LL~aAd~~~v 267 (721)
.++.+.+.+|+.||+++++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0445678999999998875
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.66 Score=53.32 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
+.|.+.+....+.-|+.+......|-++...|+.++|++.|++++....+ . -+++-++|++.-++||++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 55666666777777777777777777777777777777777777743332 1 123446666777777777766666
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
+..+.+.-. .+-+.+..|.++..
T Consensus 330 ~L~~~s~WS---------------------------------------------------------ka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 330 RLLKESKWS---------------------------------------------------------KAFYAYLAAACLLM 352 (468)
T ss_pred HHHhccccH---------------------------------------------------------HHHHHHHHHHHHHh
Confidence 666543221 23445667778888
Q ss_pred cCCh-------HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984 617 LNCP-------EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (721)
Q Consensus 617 lg~~-------eeAl~~~~~Al~l~P~------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (721)
+|+. ++|...++++-.+... -.|.+..+=.-.|....- ..+-.++-.-|-.| .|+--|+-..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~----~~~~d~~~~~p~~El~y~WNg~~~~ 428 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAK----VDLVDAILVLPALELMYFWNGFPRM 428 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCC----CcchhhhhcCHHHHHHHHHhccccC
Confidence 8888 7777777776655432 223333332222222111 12222666777777 7777777554
Q ss_pred c
Q 004984 683 D 683 (721)
Q Consensus 683 ~ 683 (721)
.
T Consensus 429 ~ 429 (468)
T PF10300_consen 429 P 429 (468)
T ss_pred C
Confidence 4
No 275
>PRK10941 hypothetical protein; Provisional
Probab=95.88 E-value=0.058 Score=57.32 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
-..|+=.+|++.++++.|+...++.+.++|+ +..+.-||.+|.++|.+..|+.|++.-++..|+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4566778899999999999999999999996 777788999999999999999999999999999843
No 276
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.86 E-value=0.0096 Score=63.79 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=74.8
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHHHhhhcChhh
Q 004984 191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (721)
Q Consensus 191 ~~~~aHr~vLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~aAd~~~v~~ 269 (721)
+.|.|.+..|-..=.||+..+.....++ ..++|+|+- .-+-.+|+=|++|+....-. ++++||..||.-+++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996522222 224566653 47889999999999997666 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004984 270 LKDACDRKLASLV 282 (721)
Q Consensus 270 L~~~C~~~L~~~l 282 (721)
|++.|-.|+..++
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999987665
No 277
>PRK10941 hypothetical protein; Provisional
Probab=95.85 E-value=0.055 Score=57.48 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (721)
|+.+.+++|.++|.++.-+--||.++.++||+..|..+++.-++..|+++.+..-+-++
T Consensus 200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 38889999999999998888899999999999999999999999999988876655444
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.83 E-value=0.041 Score=43.76 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~ 563 (721)
++++..+..+.++|+|++|.+..+++++++|+|. .+..+...++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHH
Confidence 4678888899999999999999999999999983 34454444443
No 279
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.82 E-value=0.011 Score=41.09 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
+|++++|++++.+|++++|+..|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57888888888888888888888888888775
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.34 Score=54.89 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLALE---CLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~---~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
-..+|.+..++|+.+|||..++..++..|..+ ..+++..+++.+++|.++-+-+.|--.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34478888999999999999999998877533 345566789999999999888777543
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.19 Score=53.53 Aligned_cols=125 Identities=19% Similarity=0.097 Sum_probs=90.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHH-hhcCC--h
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQER-SLYCE--G 461 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~~r-g~~~~--~ 461 (721)
.-+.-....|++.+|...|..|+.. +...+..++++++...|+.+.|...+...=...... +.....+ ..+.+ .
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 4455667889999999999999988 346678899999999999999877766321111111 1111111 11100 0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL 512 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~ 512 (721)
-.-+.++.+.+.-||++.++-+.+|..+...|++++|++.+=..+.-+-+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111357889999999999999999999999999999999999888776653
No 282
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.9 Score=50.41 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH------cCC------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA 657 (721)
+...+.+|..++.|-.+|++|..+|-. -|. ...-+.....|+--+|+|..+++|.=|.+-..-+.+
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~~~~~~-- 246 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGRGMRRE-- 246 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhccccccc--
Confidence 667899999999999999999999884 231 234567788999999999999999888887754444
Q ss_pred HHHHHHH----HhcCCCHH--HHHHHHHHhhccCCCCCchh
Q 004984 658 LRKAEES----IQMKRSFE--AFFLKAYALADSSQDSSCSS 692 (721)
Q Consensus 658 l~~ye~A----i~i~~~~~--a~~~~~~~~~~~~~~~~~~~ 692 (721)
.|..+ ++++=++. -++-....+.-+.++.|...
T Consensus 247 --~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~ 285 (421)
T KOG0529|consen 247 --CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET 285 (421)
T ss_pred --ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence 34333 33333333 45555555555555555544
No 283
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=2.8 Score=47.50 Aligned_cols=194 Identities=14% Similarity=0.061 Sum_probs=126.3
Q ss_pred hccchHHHHHHHHHHHhc----cchh------h------HhhHHHHHHHhCCHHHHHHHHHHHHhc---CCC-------c
Q 004984 395 LRKEYDEAEHLFEAAVNA----GHIY------S------IAGLARLGYIKGHKLWAYEKLNSVISS---VTP-------L 448 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~----~~~~------A------~~~lg~~~~~~G~~~~A~~~~~~aI~~---~~~-------~ 448 (721)
..|-|++|+++=++||.. ...+ . +-.+.-+..-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 456788888887888765 1111 1 223444666789999998776655543 232 3
Q ss_pred HHHHHHHhhcC----ChhHHHHHHHHHHhcCCC-C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC------H--
Q 004984 449 GWMYQERSLYC----EGDKRWEDLDKATALDPT-L--SYPYMYRASSLMTKQNVEAALAEINRILG-FKLA------L-- 512 (721)
Q Consensus 449 ~~ay~~rg~~~----~~~eAl~d~~kAieLdP~-~--~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~------~-- 512 (721)
+..++-+|.|+ .+++|-..|..|+.+--. + +..-.|+|.+|.+.|+- +++-++++ +.|. .
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCcchHHH
Confidence 45566677763 448888888888776332 2 45556688889887763 34444444 2342 1
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984 513 ---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (721)
Q Consensus 513 ---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a 589 (721)
..++.+|.+....+++.||.+-.++.+++. +.+-.+|..+.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~---------------------------------- 486 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC---------------------------------- 486 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH----------------------------------
Confidence 124567777888899999999888888877 32222222222
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
...-+|.+..-+|+..|++...+-|+.+...-+|..+.+
T Consensus 487 ----------------~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL 525 (629)
T KOG2300|consen 487 ----------------SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL 525 (629)
T ss_pred ----------------HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence 233477888889999999999999999987777665443
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.021 Score=37.67 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P 510 (721)
.+|.++|.+++.+|++++|+..|+++++++|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3566666666666666666666666666655
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.71 Score=46.50 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHH--HHHHHHHHh
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECL--ELRFCFFLA 524 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~--~~R~~~~~~ 524 (721)
||-|.+.-......+|-..|.+++..- . .+.. +.+....+-+.-+|.. ..+ .-.+-.+.+
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~--------------~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve 101 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAV--------------Q-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------h-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 455555544433356666666665421 1 1111 3444444444444431 111 113445677
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 004984 525 LEDYQAALCDVQAILTLS 542 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~ 542 (721)
.|++++|+.-++.++..-
T Consensus 102 ~~~~d~A~aqL~~~l~~t 119 (207)
T COG2976 102 ANNLDKAEAQLKQALAQT 119 (207)
T ss_pred hccHHHHHHHHHHHHccc
Confidence 777777777777776543
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.36 E-value=0.072 Score=48.72 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhcCC---------------hhHHHHHHHHHHhcCCCChHHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG---WMYQERSLYCE---------------GDKRWEDLDKATALDPTLSYPYM 483 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~---~ay~~rg~~~~---------------~~eAl~d~~kAieLdP~~~~ay~ 483 (721)
+..++.+|++-+|++.++..|..+++.. ..+..+|..+. .-.++++|.+++.|.|+.+...+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666666666666666666665443 23333343210 04455666666666666655555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 484 YRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 484 ~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
.+|.=+---.-|++++....++|.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5555544444555555555555543
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.35 E-value=0.098 Score=46.24 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLEL-RFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~~~-R~~~~~~lgd~eeAl~d~~kal 539 (721)
..++.++++++.+|++..+.+.+|..++..|++++|++.+-.++.-++++ +.... .-.++..+|.-+.....|++-+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999864 32222 2346677777666666666544
No 288
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=8.2 Score=47.39 Aligned_cols=187 Identities=13% Similarity=0.021 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhhh--hhH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL--SPDYRMFE--GRV 552 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L--~P~~~~~~--~~~ 552 (721)
+-+..|..+|.+..+.|...+||+.|=||= +|+ .+...-.+-.+.|.|++-++.+.-|.+- .|. .... ---
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHH
Confidence 346789999999999999999999998875 554 3344445667889999999999888773 233 2100 000
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
+-...++.++....-..-|+ .-+++|+.-+-+-++|...+.-.+. -|-.++..|..+|.++.|....|+|-.
T Consensus 1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11122233333333334443 2355666555555555554444443 378899999999999999999988744
Q ss_pred hCC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004984 633 HAA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (721)
Q Consensus 633 l~P-------------------------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~ 676 (721)
... -+++-+--+-..+.+-|.|+|-+...|-++.+.|---.+|-
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 322 12333334444556679999999999999999887775554
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.30 E-value=4.9 Score=42.78 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcc-chHHHHHHHHHHHhc----cc-----hh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984 383 LLAFHQLGCVRLLRK-EYDEAEHLFEAAVNA----GH-----IY-------SIAGLARLGYIKGHKLWAYEKLNSVISSV 445 (721)
Q Consensus 383 ~la~~~lG~~~~~~g-~y~eA~~~f~~AL~~----~~-----~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (721)
...+|+.|......+ ++++|..++++|.++ +. .+ .+..+++++...+.++.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~------------ 102 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYES------------ 102 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHH------------
Confidence 466799999999999 999999999999877 11 11 12223333333333322
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
.++|+...+-+-.--|+.+..+.-.=.++...++.+++.+.+.++|.-
T Consensus 103 ---------------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 103 ---------------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ---------------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 244555555556666776666644444444478888888888888864
No 290
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.27 E-value=0.31 Score=45.20 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGF-------KLAL-ECL----ELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-------~P~~-~~~----~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+..|..++.++..+|+|+|++..-++||.+ +.+- ..| +.|+.++..+|+.++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 567788999999999999999988888853 4442 223 46889999999999999999998774
No 291
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=95.25 E-value=0.18 Score=54.35 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+|||.-=.-...|-|+.+++..-.+.++....+...=+..=-..|-+.-+-....+|+. .++++.-+++|+..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence 88888777788999999999998888877554433211111111111111122344544 35666677777765
Q ss_pred C-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 542 S-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 542 ~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
. |.- | +++..+.. ||...- ...-.|-..+.-++++|+.--.++..-.|++.++.+.-=+
T Consensus 286 ~~pGP--Y-------qlqAAIaa---------~HA~a~--~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 286 RRPGP--Y-------QLQAAIAA---------LHARAR--RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred CCCCh--H-------HHHHHHHH---------HHHhhc--ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 4 332 1 12111111 111110 0011222245556666777666778888999999999999
Q ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984 621 EAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (721)
Q Consensus 621 eeAl~~~~~Al~l--~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (721)
+.++...+...+- -..++..+-.+|-.|-++|+.+||-..|++||++-++-. .=|++..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999998877766 556788889999999999999999999999999988876 5555544
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.24 E-value=0.027 Score=40.69 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 640 RLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 640 a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
++.++|.++..+|++++|+..|++|+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999977653
No 293
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.11 E-value=9.9 Score=45.22 Aligned_cols=304 Identities=19% Similarity=0.116 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHhcc--ch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 004984 377 ETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAG--HI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (721)
Q Consensus 377 ~~~lq~~la~~~lG~~~~-~~g~y~eA~~~f~~AL~~~--~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~ 447 (721)
..+.+++.....+|.++. ...++++|+.+.++|+.+. +. .+..-+++++.+.|... |....+++|+...+
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 444567888889999988 7899999999999998883 21 12345788999999888 99999999997543
Q ss_pred ---cHHHHHHH------hh-cCChhHHHHHHHHHHhcC--CCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004984 448 ---LGWMYQER------SL-YCEGDKRWEDLDKATALD--PTLSYPYM----YRASSLMTKQNVEAALAEINRILGF--- 508 (721)
Q Consensus 448 ---~~~ay~~r------g~-~~~~~eAl~d~~kAieLd--P~~~~ay~----~rg~~l~~lg~~~eAl~~~~kAL~l--- 508 (721)
.+|.|.=| .. .++...|++.+++...+. +.+...+. ..|.+....+..+++++..++++..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 45555333 11 146688999998888876 45544433 3688888889899999999988442
Q ss_pred ---CCC-----HHHHHH--HHHHHHhcCCHHHHHHHH---HHHHh---hCC-------C-------------------ch
Q 004984 509 ---KLA-----LECLEL--RFCFFLALEDYQAALCDV---QAILT---LSP-------D-------------------YR 546 (721)
Q Consensus 509 ---~P~-----~~~~~~--R~~~~~~lgd~eeAl~d~---~kal~---L~P-------~-------------------~~ 546 (721)
+|+ ...+.. .-.++...|+++.+.... +..+. -.| + ..
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 232 222222 335678888866665443 22222 222 1 00
Q ss_pred hhhhhHHHHHH---HHH--------HHHhhhhhhHHHHHHhhhhccc-cccccchHHHHHHHHHhCCC----ChhHHHHH
Q 004984 547 MFEGRVAASQL---HML--------VREHIDNWTIADCWLQLYDRWS-SVDDIGSLSVIYQMLESDAP----KGVLYFRQ 610 (721)
Q Consensus 547 ~~~~~~~a~~~---~~~--------l~~~~~~~~~A~~~~~l~~~~~-~~dd~~al~~~~qaL~l~P~----~~~~~~~~ 610 (721)
.|.+......+ ... .....+.++++. +.-+.+. ..+... -..+..+.+.-++ .-...+.+
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l---~~i~~~~~~~~~~~-~~sl~~~~~~~~~~~~l~~~~~~y~ 367 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL---KQIEKLKIKSPSAP-SESLSEASERIQWLRYLQCYLLFYQ 367 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH---HHHHHhhccCCCCC-CcCHHHHHHhHHHHHHHHHHHHHHH
Confidence 12222221111 111 112233333331 2222222 000000 0011111111111 12345677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHH-
Q 004984 611 SLLLLRLNCPEAAMRSLQLARQHAA---------SDHERLVYEGWILYDTSHCEEGLRKAE--------ESIQMKRSFE- 672 (721)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P---------~~~ea~~~~G~~Ly~~G~~deAl~~ye--------~Ai~i~~~~~- 672 (721)
+....-+|++..|......+..... -.+..++-.|...-..|+.+.|+..|. .+....+..|
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 7777889999889988887776632 247789999999999999999999997 6667777777
Q ss_pred ---HHHHHHHHhhccC
Q 004984 673 ---AFFLKAYALADSS 685 (721)
Q Consensus 673 ---a~~~~~~~~~~~~ 685 (721)
|=.|..+.+-+.+
T Consensus 448 ~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 448 YILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHHHHhHhhc
Confidence 2234555554433
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.10 E-value=0.031 Score=40.37 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFK 509 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~ 509 (721)
+|.++|.++..+|++++|++.|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46677777777777777777777766543
No 295
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.04 E-value=0.06 Score=54.54 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=77.1
Q ss_pred CccEEEEEcCeEEEeehhhhhcCCH--HHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984 181 LRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (721)
Q Consensus 181 ~~DV~l~v~~~~~~aHr~vLAa~S~--yF~amF~~~---~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v 255 (721)
.+=|.+.+||+.|-.-+--|..+-| -.-+||.+. -.|+.+.-+-|. -+|.-|+.+++|+..|.+...+.-++
T Consensus 8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccH
Confidence 3458899999999888877777765 678899873 245566667776 79999999999999999986677789
Q ss_pred HHHHHHhhhcChhhHHHHHHH
Q 004984 256 LEILIFANKFCCERLKDACDR 276 (721)
Q Consensus 256 ~~LL~aAd~~~v~~L~~~C~~ 276 (721)
.++|..|++|++-.|++.-+.
T Consensus 85 lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhh
Confidence 999999999999999987776
No 296
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.02 E-value=0.32 Score=51.93 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESI 665 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~Ly~~--G~~deAl~~ye~Ai 665 (721)
|..+|++++...|.++++|.....-|..+|+.+.|...|++++..-|... -...+.-|+-|.. |+.+.....++|+.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788889999999999999999999999999999999999999988877 5666677776655 99999999999999
Q ss_pred hcCCCHH
Q 004984 666 QMKRSFE 672 (721)
Q Consensus 666 ~i~~~~~ 672 (721)
++-|+..
T Consensus 135 ~~~~~~~ 141 (280)
T PF05843_consen 135 ELFPEDN 141 (280)
T ss_dssp HHTTTS-
T ss_pred HHhhhhh
Confidence 9987744
No 297
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.86 E-value=0.072 Score=58.79 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=71.0
Q ss_pred EEEEEcCeEEEeehhhhhcCC--HHHHHhhcCCCCcCCcce--EEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S--~yF~amF~~~~~Es~~~~--I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL 259 (721)
|.|.|||+.|.-.+.-|+... .+|-++|++.+.-.+... |-|. =+|+.|..+|+|+.||.++ ++.-....++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 789999999999999997655 599999988775444333 5555 6899999999999999999 7655555555
Q ss_pred H-HhhhcChhhHHH---HHHHH
Q 004984 260 I-FANKFCCERLKD---ACDRK 277 (721)
Q Consensus 260 ~-aAd~~~v~~L~~---~C~~~ 277 (721)
. =|.+|+++.+.+ .|+.-
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 5 899999999886 45443
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.83 E-value=9.2 Score=46.40 Aligned_cols=264 Identities=12% Similarity=-0.020 Sum_probs=159.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchh-h---HhhHHHHHHHhCCHHHHHHHHH----HHHhcCCC----cHHHHH
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-S---IAGLARLGYIKGHKLWAYEKLN----SVISSVTP----LGWMYQ 453 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-A---~~~lg~~~~~~G~~~~A~~~~~----~aI~~~~~----~~~ay~ 453 (721)
+++-.......|...+|+.+ |+..+... + .-+.|.-....++..-=+++.+ ..+..+|. .+|..+
T Consensus 350 H~~Aa~w~~~~g~~~eAI~h---AlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 350 HRAAAEWFAEHGLPSEAIDH---ALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred HHHHHHHHHhCCChHHHHHH---HHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 34445556677888888764 34342211 1 1112222233333322222221 23334554 344444
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------HHHHHH
Q 004984 454 ERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL------ECLELR 518 (721)
Q Consensus 454 ~rg~~~~~~eAl~d~~kAieLdP~---------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~------~~~~~R 518 (721)
-...+ .||-...+++-.--|. .+..-.-+|.+....|++++|++..++++..=|.. -+....
T Consensus 427 s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 427 SQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 44444 7776666665554444 24555669999999999999999999999876631 223456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~ 598 (721)
+.+..-.|++++|....+.+.++.-.|.-++--+-+......+.....+...++. .... --...|-+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~---~~~~---------~~~~~q~l~ 571 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ---EKAF---------NLIREQHLE 571 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHH---------HHHHHHHhh
Confidence 7789999999999999999999866653333223333434444444443333321 0000 124667777
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHE-RLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~e-a~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
..|.+.-+.--++.++..-.|.+++..-.+..+++--. ... ++..++.+.+..|++|+|.....+...+
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 78887777666666666666688888888877765432 222 2347788899999999999988887775
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.81 E-value=0.23 Score=43.91 Aligned_cols=76 Identities=9% Similarity=-0.074 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
++-+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=-++--+|.-+.-...|+|-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 567888889999999999999999999999999999999998888876 4454555555666677676777777654
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.80 E-value=11 Score=44.72 Aligned_cols=178 Identities=11% Similarity=-0.015 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-hCCC
Q 004984 478 LSYPYMYRASSLMTKQNVEAALAEIN--------RILGFKLALECL----ELRFCFFLALEDYQAALCDVQAILT-LSPD 544 (721)
Q Consensus 478 ~~~ay~~rg~~l~~lg~~~eAl~~~~--------kAL~l~P~~~~~----~~R~~~~~~lgd~eeAl~d~~kal~-L~P~ 544 (721)
.+..++-.|..++..|+.+.|+..|. .+....+..+.+ .|+.+++...+.-..-..+...+++ ++|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 46778889999999999999999998 555555554433 3466676666654443335666666 6664
Q ss_pred ch---hhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 545 YR---MFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 545 ~~---~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
.. ..+.+.+.......+..... ...++.- .+-+ ++..+.+++...---.-+.+-.|..+. .|..
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~--~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR--HLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHHH--HHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 21 12223322222211111100 0111110 0000 122222223332233334556666666 7999
Q ss_pred HHHHHHHHHHHHhCCCC---hhHHH---HHHHH---HHhcCCHHHHHHHHHHHHhc
Q 004984 621 EAAMRSLQLARQHAASD---HERLV---YEGWI---LYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~---~ea~~---~~G~~---Ly~~G~~deAl~~ye~Ai~i 667 (721)
+|......+++.+.+.. ...+| +.|.+ +-..|+.++|-...++...+
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 99888888888776665 88777 44443 45679999998888776543
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.77 E-value=0.088 Score=48.19 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=74.4
Q ss_pred cccccchHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984 583 SVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 583 ~~dd~~al~~~~qaL~l~P~~~---~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P~~~ea~~~~G~~L 648 (721)
+-+-+.||.+++..+...+++. ..+.-+|.++.++.. .-.|++.|+++..+.|+.+-.++.+|.-+
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l 88 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQL 88 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence 3455668999999999999988 778899999977432 34799999999999999999999999988
Q ss_pred HhcCCHHHHHHHHHHHHhc-CC
Q 004984 649 YDTSHCEEGLRKAEESIQM-KR 669 (721)
Q Consensus 649 y~~G~~deAl~~ye~Ai~i-~~ 669 (721)
--.-.|++++...+|++++ +|
T Consensus 89 ~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 89 GSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred hhHHHHHHHHHHHHHHhcccCC
Confidence 8888899999999999997 44
No 302
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.66 E-value=0.12 Score=58.51 Aligned_cols=84 Identities=19% Similarity=0.108 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l---g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
..|+.+|.+|+.--|+....|.||+.+++.. |+.-.|+.|.-.|+++||. ..+++.++.++..++++.+|+.+...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 4455555555555555555555555555543 2333455555555555554 33344444555555555555555555
Q ss_pred HHhhCCCc
Q 004984 538 ILTLSPDY 545 (721)
Q Consensus 538 al~L~P~~ 545 (721)
+....|.+
T Consensus 471 lq~~~Ptd 478 (758)
T KOG1310|consen 471 LQMSFPTD 478 (758)
T ss_pred HhhcCchh
Confidence 55555533
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.45 E-value=0.061 Score=37.18 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
++++++|.++.++|++++|++.+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999985
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.43 E-value=0.092 Score=55.82 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (721)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (721)
+.+.-..+.|+.|.|+..+.-|+.++|++++++.-.|...-.-.+.-+|-+.|-||+.|.|+.. |--||+-+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4444557899999999999999999999999999999999999999999999999999999987 77777654
No 305
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=0.11 Score=58.60 Aligned_cols=88 Identities=13% Similarity=-0.067 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
++..|.+++..-|....++-|++.++.+ -|+.-.|+++.-.|++++|...-||++++-+|..++++.||++....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 4778999999999999999999999988 6788889999999999999999999999999999999999999988888
Q ss_pred hcCCCHHHHHH
Q 004984 666 QMKRSFEAFFL 676 (721)
Q Consensus 666 ~i~~~~~a~~~ 676 (721)
-..|+..|--+
T Consensus 473 ~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 473 MSFPTDVARQN 483 (758)
T ss_pred hcCchhhhhhh
Confidence 88885554433
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.29 E-value=1.5 Score=47.90 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
+.+....+...|..|-|+..++..++++=
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55666667778888999999988888874
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.23 E-value=0.07 Score=38.84 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
+.++.++|.++..+|++++|.+.+++|+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35788999999999999999999999998754
No 308
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.95 E-value=1 Score=48.10 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~----~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+-|...|++++..-|++...|..-..-+...|+.+.|-..|++++..-|... .|......=...|+.+.....+++
T Consensus 53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3366667777777788877787777888899999999999999998766533 333334456677999999999999
Q ss_pred HHhhCCCc
Q 004984 538 ILTLSPDY 545 (721)
Q Consensus 538 al~L~P~~ 545 (721)
+.++-|+.
T Consensus 133 ~~~~~~~~ 140 (280)
T PF05843_consen 133 AEELFPED 140 (280)
T ss_dssp HHHHTTTS
T ss_pred HHHHhhhh
Confidence 99998884
No 309
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.93 E-value=1 Score=50.86 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH---------hC---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ---------HA---------ASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~---------l~---------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
-.+|+|+|-+.+++|++..+...|.+|++ +. ...-+.+||.|..++..|+--+|.+++-+|.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 45689999999999999999999999997 12 2467999999999999999999999999999
Q ss_pred hcCCCH-HHHH---------HHHHHhhccCCCCCchhhHH
Q 004984 666 QMKRSF-EAFF---------LKAYALADSSQDSSCSSTVV 695 (721)
Q Consensus 666 ~i~~~~-~a~~---------~~~~~~~~~~~~~~~~~~~~ 695 (721)
..=... --|. ++|-.+..+.--|+-|..++
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~ 402 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV 402 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence 873333 3554 34444455554555555544
No 310
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.18 Score=49.47 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=70.7
Q ss_pred cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--------------------
Q 004984 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (721)
Q Consensus 189 ~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~-------------------- 248 (721)
+|+.|.+-..+ |-.|..+.+++...--......|.|+ +|+..+|+.|++|++.-+-+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 67777777665 46788888888653222222578888 59999999999999984321
Q ss_pred ----CCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 249 ----~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
.+..+++.+|+.||++|.+++|.+.|++.++.++.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 02345789999999999999999999999998874
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.76 E-value=0.18 Score=40.05 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|+++...|++|+|++|....+++++++|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 44555555555555555555555555555554
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1.4 Score=50.88 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCC-HHHHHHH------HHHHHhcCCHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR-ILGFKLA-LECLELR------FCFFLALEDYQA 530 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~k-AL~l~P~-~~~~~~R------~~~~~~lgd~ee 530 (721)
+....+...+..++..||++..++.++|.++...|..-.|+.++.. +....|+ .+....+ +..+..+|+.++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE 160 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 3446778888999999999999999999999999999999999888 8888886 3433334 678899999999
Q ss_pred HHHHHHHHHhhCCCchh
Q 004984 531 ALCDVQAILTLSPDYRM 547 (721)
Q Consensus 531 Al~d~~kal~L~P~~~~ 547 (721)
|..+..++..+.|.|+.
T Consensus 161 ~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 161 AELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 99999999999999943
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=5 Score=41.99 Aligned_cols=158 Identities=11% Similarity=-0.046 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHH
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIY-------SIAGLARLGYIKGHKLWAYEKLNSVISSVT-----PLGW 450 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-----~~~~ 450 (721)
-.+..-++.+...++|++|..+..+|++- .... ++-..|.+......+.++...|++|+.+|. +-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 34444455555566666666666666643 1111 122233333444455555666666665532 2222
Q ss_pred HHHHH-hhc---CChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHH--
Q 004984 451 MYQER-SLY---CEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LEC-- 514 (721)
Q Consensus 451 ay~~r-g~~---~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~-- 514 (721)
+-..+ ++. -..++|+.-|.+++++=-.. .+-|...+.+|..++++.||-..|.|-..+... +..
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 22222 221 12266666666666542222 345566788888888888888777765544321 111
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 515 -LELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 515 -~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+.....+++-..||..|...|+..-.+
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 222335677777888888888776655
No 314
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.59 E-value=23 Score=43.21 Aligned_cols=233 Identities=15% Similarity=0.066 Sum_probs=151.1
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHh-hh-----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----
Q 004984 347 LYCLLSEVAMNLDPRSDKTVCFLERLLES-AE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI----- 415 (721)
Q Consensus 347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~-a~-----~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~----- 415 (721)
+.-+-.|.... ..|...+..+++++-+. +. .....+...-..|.+...+|+.++|++.-+.|+..=+.
T Consensus 417 Lvll~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 417 LVLLQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHHHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 33444455444 34666777777775542 21 12122334466899999999999999999999987222
Q ss_pred --hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHhhcC--C----hhHHHHH----HHHHHhcCCC
Q 004984 416 --YSIAGLARLGYIKGHKLWAYEKLNSVISSVT------PLGWMYQERSLYC--E----GDKRWED----LDKATALDPT 477 (721)
Q Consensus 416 --~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~------~~~~ay~~rg~~~--~----~~eAl~d----~~kAieLdP~ 477 (721)
-+....|.+..-+|++++|...+..+-+... -..|+...++.+. + +.+.... +.+-+.-.|-
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2344578889999999999888887776521 1234444333221 1 1222222 3345566788
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhh
Q 004984 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFK----LAL--ECL--ELRFCFFLALEDYQAALCDVQAILTLSPDY-RMF 548 (721)
Q Consensus 478 ~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~----P~~--~~~--~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~ 548 (721)
..++..-|+.++..--+++++..+..+.+++- |.+ .++ ...+-+....||+++|..-.+....+--+. ...
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 88888889999988888999999999999873 222 222 256778999999999999998887753332 223
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (721)
.-..++....-.+-....+.+.+.+|..-...
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 33455555555566667777777776655444
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.12 E-value=0.28 Score=50.42 Aligned_cols=58 Identities=14% Similarity=-0.014 Sum_probs=34.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
..-++.+.|.+.|.+|+++.|..+..++-+|..-.+.|+++.|.+.|++.++|+|.-.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4445555666666666666666666666666666666666666666666666665544
No 316
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.12 E-value=0.33 Score=55.58 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC--------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSVTP--------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~~~--------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
+..+|+...|++++.+|+.+.|. ++.....-|.. .+|-.-+.+++.++-.-+-.++..|.++..+++.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~---~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH---LDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh---ccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 35566666666666666665542 23333333322 55555556666666555555555666666666666
Q ss_pred HHHHHHHHHHhcCCC
Q 004984 497 AALAEINRILGFKLA 511 (721)
Q Consensus 497 eAl~~~~kAL~l~P~ 511 (721)
.||+.|+.|+.++|+
T Consensus 694 ~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhcCCC
Confidence 666666666666654
No 317
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=1.6 Score=50.32 Aligned_cols=127 Identities=12% Similarity=-0.048 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 004984 498 ALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (721)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (721)
|+..+.--+.++|+ +..+.. +...+..+++...|....+.++..||++...+.. +...++....+...+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----L~~ale~~~~~~~~~--- 121 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQN-----LAAALELDGLQFLAL--- 121 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHH-----HHHHHHHhhhHHHHH---
Confidence 44444444445554 333211 3445666677777777777777777776432211 111111111111111
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 575 ~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~------g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L 648 (721)
+...+.+....|.+..+.+-+ |..+..+|+.++|.....++.++.|.+++ ...||+-
T Consensus 122 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~~ 184 (620)
T COG3914 122 ---------------ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALMT 184 (620)
T ss_pred ---------------HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHHH
Confidence 223334666666666666655 88899999999999999999999999954 4555554
Q ss_pred H
Q 004984 649 Y 649 (721)
Q Consensus 649 y 649 (721)
.
T Consensus 185 ~ 185 (620)
T COG3914 185 A 185 (620)
T ss_pred H
Confidence 4
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.71 E-value=4 Score=44.52 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (721)
Q Consensus 464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P 543 (721)
....|++.++-+|++..+|..+....-.+-...... ....++. .+..+.-|++|++-+|
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a~-------~E~klsilerAL~~np 62 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRAL-------AERKLSILERALKHNP 62 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHHH-------HHHHHHHHHHHHHhCC
Confidence 456789999999999999988776554433211111 0111111 3566778889999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----
Q 004984 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----- 618 (721)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg----- 618 (721)
+... -.++.+....+.|+.-. -..-.++++..+|++..+| ++.+-..++
T Consensus 63 ~~~~--------L~l~~l~~~~~~~~~~~----------------l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 63 DSER--------LLLGYLEEGEKVWDSEK----------------LAKKWEELLFKNPGSPELW--REYLDFRQSNFASF 116 (321)
T ss_pred CCHH--------HHHHHHHHHHHhCCHHH----------------HHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence 8732 22222233333332221 1336889999999999999 555666655
Q ss_pred ChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 619 CPEAAMRSLQLARQHAASD------------------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~------------------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
.+++-...|.++++.-..- .+.+..+..-+.+.|..+.|++.+.-.++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3556777777776654432 2234445555778899999999999998864
No 319
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.59 E-value=22 Score=40.33 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=50.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHhh
Q 004984 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFFLKAYALA 682 (721)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~---a~~~~~~~~~ 682 (721)
|.-.|.+.++.-...=..+++| ++.++.-+|.+++...+|+|||..+.. +-|+-. +---||.+|-
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 4556888888888888899999 899999999999999999999977653 344443 4444566553
No 320
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.46 E-value=0.31 Score=55.86 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=97.6
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984 580 RWSSVDDIG-SLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 580 ~~~~~dd~~-al~~~~qaL~l~P~~~~-~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA 657 (721)
.|..++..- |.+|+.+|+-..|-..+ -..+++.++.+-|-.-.|-..+.++++++...+--++.+|..++.+.+.++|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 455555555 88899999999997654 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHH--HHHHHHHHhh-----ccC-CCCCchhhHHHH--HHHhhcCCCC
Q 004984 658 LRKAEESIQMKRSFE--AFFLKAYALA-----DSS-QDSSCSSTVVSL--LEDALKCPSD 707 (721)
Q Consensus 658 l~~ye~Ai~i~~~~~--a~~~~~~~~~-----~~~-~~~~~~~~~~~~--~~~~~~~~~~ 707 (721)
++.+++|+.+.|+.. .=-||-++-. =+| .-+-||+|||+- .-|+ +|-||
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c~~~~~~~~~~~~svc~~~ive~sn~~d~-~~n~d 754 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRCMQFYPFLYNITSSVCSGTVVEESNGSDE-MENSD 754 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhhhhhHHHhccccceeeeeeecCCCcch-hhccc
Confidence 999999999999876 2223332221 122 233467777631 2233 56666
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.45 E-value=0.2 Score=51.53 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P 510 (721)
+.|.+.|++|++|-|+++.-|...|...-..|+++.|...|.+.++++|
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4444455555555555555555555555555555555555555555544
No 322
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=1 Score=47.53 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (721)
+.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++.+
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 6677888888888888888899999999999999999999999999988876655443
No 323
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.07 E-value=2 Score=46.53 Aligned_cols=125 Identities=19% Similarity=0.098 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcC-CCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984 495 VEAALAEINRILGFK-LALECLE-------LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~-P~~~~~~-------~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (721)
.+|++.-++||+..+ |.|..+. .++. .-..-||..-...|+....+.|+-.--.||..+......-..
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~a--- 347 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAA--- 347 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHh---
Confidence 567777778887764 4443221 1111 345567888888999999999997655556555443321111
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
+|+.++...+- =-++-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-+
T Consensus 348 ----------------------gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 348 ----------------------GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ----------------------HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 24444444433 234455677899999999999999999999999999999976655
Q ss_pred H
Q 004984 645 G 645 (721)
Q Consensus 645 G 645 (721)
+
T Consensus 406 ~ 406 (415)
T COG4941 406 Q 406 (415)
T ss_pred H
Confidence 4
No 324
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.04 E-value=0.65 Score=37.95 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt 244 (721)
|+|+- +|+.|.+.+.+. -.|..++.||.+.-.+.. .|.++ +|+..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 56665 788999988865 589999999986433332 79998 5999999999999863
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.58 E-value=0.29 Score=35.46 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
+.++.++|.+|..+|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888888888888888888865
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.42 E-value=2.2 Score=43.34 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=65.2
Q ss_pred hhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 004984 576 QLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD 650 (721)
Q Consensus 576 ~l~~~~~~~dd~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~ 650 (721)
-+|-.|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+|+++.+.+ ++.+..++.+++.
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4677888888887777665543221 356778888887777 566777999999999998765 9999999999999
Q ss_pred cCCHHHHH
Q 004984 651 TSHCEEGL 658 (721)
Q Consensus 651 ~G~~deAl 658 (721)
+|++++|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999985
No 327
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.38 E-value=0.63 Score=49.71 Aligned_cols=58 Identities=19% Similarity=0.062 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (721)
++|..-|+.|+.++|+++++....|...-+-++.-+|=..|-|||.+.|. .+++.+|.
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 55555555555555555555555555555555555555555555555552 44444443
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=41 Score=45.25 Aligned_cols=313 Identities=12% Similarity=0.023 Sum_probs=182.6
Q ss_pred HHHHHHHhccchHHHHHHHHHH----HhccchhhH-hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChh
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAA----VNAGHIYSI-AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~A----L~~~~~~A~-~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~ 462 (721)
.++.+-+..|.|..|.-++++- .+.+-..++ ..+-.+|...+++++-...... ....|++-.-....-..|..+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 5777888899999999999982 222222232 3344588888888876655432 233444433333333445569
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHH------
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC-FFLALEDYQAALCD------ 534 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~-~~~~lgd~eeAl~d------ 534 (721)
.|.++|++++..+|+....+...=......|.++..+...+=.+.-.++ .+.++..+. +--++++++.-...
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~ 1546 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNI 1546 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccc
Confidence 9999999999999999999998888888999999999877766654443 454544331 21333333322222
Q ss_pred -------HHHHH---------------------hhCCCchhhhhhH--HHHHHHHHHH---------Hhhhh-------h
Q 004984 535 -------VQAIL---------------------TLSPDYRMFEGRV--AASQLHMLVR---------EHIDN-------W 568 (721)
Q Consensus 535 -------~~kal---------------------~L~P~~~~~~~~~--~a~~~~~~l~---------~~~~~-------~ 568 (721)
.-+++ -++|--..+..+- .++.....+- ..+.+ .
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~ 1626 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSA 1626 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 11111 1111110000000 0111111110 00000 0
Q ss_pred hHHHHHHhhhhccccccccc-hHHHHHHHH-Hh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984 569 TIADCWLQLYDRWSSVDDIG-SLSVIYQML-ES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 569 ~~A~~~~~l~~~~~~~dd~~-al~~~~qaL-~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
..-+.|....+.-....++. .+-.++|++ +. +-.-++.|.+.|.+=-+-|+++-|..+.=.|.+.. -+++
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence 11133333333333332222 122333332 22 34456667777777777999999999999999888 5788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------------HHHHHHHHHHhh----ccCCCCCchhhHHHHHHHhhc
Q 004984 641 LVYEGWILYDTSHCEEGLRKAEESIQM-KRS------------FEAFFLKAYALA----DSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~------------~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 703 (721)
+.-++-.+..+|+-..|+...++.+++ .|+ ..-+|.||..+. +-+-. .+|.-|+..--+|.-
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 899999999999999999999999976 455 124555555443 33333 556666655555555
Q ss_pred C
Q 004984 704 C 704 (721)
Q Consensus 704 ~ 704 (721)
|
T Consensus 1784 i 1784 (2382)
T KOG0890|consen 1784 I 1784 (2382)
T ss_pred H
Confidence 4
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.50 E-value=0.37 Score=35.62 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFK 509 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~ 509 (721)
+.|..+|.+-++.++|++|+.||.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888887653
No 330
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.29 E-value=1.1 Score=39.68 Aligned_cols=56 Identities=25% Similarity=0.209 Sum_probs=46.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 615 LRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~---------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.+.|++.+|++.+.+........ ..++.++|.+.+..|++++|+..+++||++-+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 56789999988887777665543 468899999999999999999999999998543
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.94 E-value=0.38 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
.+++++|++++.+|+.++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4566777777777777777766653
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.35 E-value=15 Score=40.80 Aligned_cols=156 Identities=16% Similarity=0.044 Sum_probs=100.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------c-----CCCH-------HHHHHHH---------
Q 004984 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------F-----KLAL-------ECLELRF--------- 519 (721)
Q Consensus 470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~---------l-----~P~~-------~~~~~R~--------- 519 (721)
..+.-+|-+.+++..++.++..+|+++.|-+-++|||= + ++.. ....||.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34678999999999999999999999999999999852 2 2210 0112332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984 520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~kal~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~ 598 (721)
..+.+.|-+.-|++..+-.+.|||. ++. . +.....-..-.-++++ -++.+++.+... ...+.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g----~ll~ID~~ALrs~~y~---~Li~~~~~~~~~-------~~~~~~~ 175 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-G----VLLFIDYYALRSRQYQ---WLIDFSESPLAK-------CYRNWLS 175 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-h----hHHHHHHHHHhcCCHH---HHHHHHHhHhhh-------hhhhhhh
Confidence 3588999999999999999999999 543 1 1111111111122222 122333321110 0111122
Q ss_pred hCCCChhHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHhCCCChhHHHH
Q 004984 599 SDAPKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAASDHERLVY 643 (721)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~---------------eeAl~~~~~Al~l~P~~~ea~~~ 643 (721)
. -|..-|..++++..+++. ++|-..+++|+..-|.-.-.+..
T Consensus 176 ~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 176 L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 2 235678889999999999 89999999999999875544443
No 333
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=10 Score=42.37 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh------cC------C
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----EAAMRSLQLARQHAASDHERLVYEGWILYD------TS------H 653 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~------~G------~ 653 (721)
|...+++|+.||+|-++|..|=.+..+..+. .+=++.-.+++.-++.|=.|+.||.+++-. .| .
T Consensus 131 L~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~ 210 (421)
T KOG0529|consen 131 LQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKEL 210 (421)
T ss_pred HHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHH
Confidence 6778888999999999998888777775554 667888899999999999999999999883 35 3
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
....+..=..||=-+|+.. +||..=+.|.-
T Consensus 211 l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 211 LQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 6677888889999999988 88886655543
No 334
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=3.3 Score=40.59 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
...++..-.+.|+.+++-.--|.++...|++.+|++.++.+.+-.|..+.+---+++||+.+|+
T Consensus 30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3344444445555555555555555555555555555555555555555555555555555554
No 335
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.97 E-value=47 Score=37.83 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCC-----HhhHHHHHHHhcccCChhHHHHHHHHHHhhccc-------CCC
Q 004984 253 NLLLEILIFANKFCCERLKDACDRKLASLVAS-----REDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLN 320 (721)
Q Consensus 253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~-----~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~ 320 (721)
+-|.+-|.-.-.=..+++...|+..-.+.+.. ++.--.++..+....-+..++.|+..+.-=-|. .++
T Consensus 261 ~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls 340 (549)
T PF07079_consen 261 DLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLS 340 (549)
T ss_pred hHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcC
Confidence 33444444333335666777776554333211 111112333444444555666666554322221 567
Q ss_pred hHHHHHHhccccc
Q 004984 321 DERVVEIFSHANR 333 (721)
Q Consensus 321 ~~~v~~ll~~~~~ 333 (721)
...+.+|+|.||.
T Consensus 341 ~~~lq~Iv~~DD~ 353 (549)
T PF07079_consen 341 PKVLQDIVCEDDE 353 (549)
T ss_pred HHHHHHHHhcchH
Confidence 7888888887775
No 336
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=1.4 Score=46.51 Aligned_cols=69 Identities=17% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
.=.++.+-++++.|.++.++.+.++|.+++-+.-+|.+|+++|.+.-|+..++..++.-|+-. |=.+|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 444677889999999999999999999999999999999999999999999999999988877 555554
No 337
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=26 Score=40.03 Aligned_cols=154 Identities=18% Similarity=0.043 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc---cch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA---GHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISS------- 444 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~---~~~---------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------- 444 (721)
+.+..+.++..-+|++.+|++....+.+. -|. ..+..+|.-...-|.++.|...|..|.++
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 34456677777788888888877666543 111 12334565556667778887777777765
Q ss_pred ---CCCcHHHHHHHhhcCChhHHHHHHHHHHhc-CCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 445 ---VTPLGWMYQERSLYCEGDKRWEDLDKATAL-DPTL----------SYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (721)
Q Consensus 445 ---~~~~~~ay~~rg~~~~~~eAl~d~~kAieL-dP~~----------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P 510 (721)
+.|++..|.+.|. -+|+-+++++ .|.+ +..++-.|...+.++++.||-.-..+.++..
T Consensus 404 a~~nlnlAi~YL~~~~-------~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma- 475 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGD-------AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA- 475 (629)
T ss_pred HHHHHhHHHHHHHhcc-------HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-
Confidence 2344445544432 2445555554 6664 3566778899999999999999999999875
Q ss_pred CHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 511 ALEC--------LELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 511 ~~~~--------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
+.+. +..++.+..-+|+..++..-.+-+..+..+-
T Consensus 476 naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 476 NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 3221 2345677889999999999888888877553
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.93 E-value=1.6 Score=37.62 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI---LYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~---Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
+..+|+=|...+..++|+...++|++..++..+.+..+|++ +.+.|+|.+.++..-+=+.|..
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999999999999998875 7889999999988777666543
No 339
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.86 E-value=5.8 Score=38.91 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=56.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
..+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33445567999999999999999999999999999999999999999999999988888776
No 340
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=13 Score=45.72 Aligned_cols=153 Identities=13% Similarity=0.027 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CC----CcHHHHHHHhh
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VT----PLGWMYQERSL 457 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~----~~~~ay~~rg~ 457 (721)
-.|-++|.+.++.|...+|++.|-+| +.+.+|...-.+..+.|.+++=++.+.-|-+. .| .+-.+|-..++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 45678999999999999999999765 33444445555556666666655544322221 11 11222222211
Q ss_pred c-------------------------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Q 004984 458 Y-------------------------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A 511 (721)
Q Consensus 458 ~-------------------------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~ 511 (721)
+ +.++.|.-.| ++..-|..+|..+..+|.|+.|+...+||=..+- .
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 1 0113333334 3455788999999999999999999999864432 0
Q ss_pred ---HHH----------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 512 ---LEC----------------------LELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 512 ---~~~----------------------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
..| +.-.-..|...|-++|-|..++.++-|.-.++.
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 111 111223488999999999999999999876643
No 341
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.72 E-value=8.4 Score=45.65 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCHhh---HHHHHHHhcccCChhHHHHHHHHH
Q 004984 273 ACDRKLASLVASRED---AVELMGYAIEENSPVLAVSCLQVF 311 (721)
Q Consensus 273 ~C~~~L~~~l~~~~n---~~~l~~~A~~~~~~~L~~~c~~~~ 311 (721)
....||.+.-+.++. -+.+-++|++++.-.++..|..-+
T Consensus 462 ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 462 RATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445677776654332 233446788988888899996443
No 342
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.59 E-value=0.19 Score=54.60 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=63.5
Q ss_pred ccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHH
Q 004984 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI 260 (721)
Q Consensus 182 ~DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~ 260 (721)
.|++|.+ +|+.|-|||..|+++|.+|..-+..-+ ....+|.-.. +-+.+|..++.|.|-..=. +-++.-.+|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~na-~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTNA-EWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence 4899988 788899999999999998754433222 2334553332 8899999999999977333 44556688999
Q ss_pred HhhhcChhhHHH
Q 004984 261 FANKFCCERLKD 272 (721)
Q Consensus 261 aAd~~~v~~L~~ 272 (721)
...+|+++.+..
T Consensus 225 i~~kF~~e~l~~ 236 (516)
T KOG0511|consen 225 IEVKFSKEKLSL 236 (516)
T ss_pred hhhhccHHHhHH
Confidence 999999887654
No 343
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.53 E-value=1.1 Score=38.41 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC--CHhhHHHHH
Q 004984 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELM 292 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~~~l~ 292 (721)
++.+.+.+|+.||++++++.|.+.|++.++..+. +++....++
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~f 55 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYF 55 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 5678999999999999999999999999999885 344444443
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.36 E-value=3.7 Score=43.93 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~ 684 (721)
.++..++..+...|+.+++...+++-++++|-+-.++..+=-.++..|+...|+..|++.-.. --.|.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~edl 221 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAEEL 221 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhhhc
Confidence 445567778888899999999999999999999999999999999999999999999987665 23444
Q ss_pred CCCCCchhhHHHHHHHhhcCCC
Q 004984 685 SQDSSCSSTVVSLLEDALKCPS 706 (721)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~ 706 (721)
++|| +..+-.+.+++++||-
T Consensus 222 gi~P--~~~~~~~y~~~~~~~~ 241 (280)
T COG3629 222 GIDP--APELRALYEEILRQDP 241 (280)
T ss_pred CCCc--cHHHHHHHHHHhcccc
Confidence 4554 5677888888887764
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.32 E-value=4 Score=46.47 Aligned_cols=83 Identities=4% Similarity=-0.023 Sum_probs=63.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMK 668 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~-~deAl~~ye~Ai~i~ 668 (721)
+..|++|+...|+++.+|.+-..--.+-+-+.+--..|.+++...|++++.+.+-+.-+|.-+. ++-|-+.+-+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 3367788888888888887776655556657777778888888888888888888777777776 777778888888888
Q ss_pred CCHH
Q 004984 669 RSFE 672 (721)
Q Consensus 669 ~~~~ 672 (721)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8776
No 346
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=2.6 Score=39.39 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=69.7
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--C----------
Q 004984 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--G---------- 249 (721)
Q Consensus 183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~--~---------- 249 (721)
-|.++. +|+.|.+.+. +|-+|-..+.|+.. +.+++- .|..+ +|...+|+.+++|+-..+-. .
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~-p~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNY-PIPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCC-CCccc--chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 344544 6777777665 57888888988864 333332 23444 59999999999999643211 0
Q ss_pred ------------CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 250 ------------VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 250 ------------i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
+..+.+.++.-+|+++.+..|.+.||..++..+.
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 2235688999999999999999999999998875
No 347
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.02 E-value=54 Score=41.01 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-HHHHH
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTK-------QNVEAALAEINRILGFKLA-LECLE 516 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~l-------g~~~eAl~~~~kAL~l~P~-~~~~~ 516 (721)
.+.|+.+-..| +.|+.-|++.-+-=|+-. +|.+..|.++.++ ..+++|+.+|++.-.- |. |=-|.
T Consensus 481 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHH
Confidence 34555555555 666666666665555543 3445556655543 2477888888886632 33 32233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
-.+.+|..+|+|+|=+++|.-|++.-|+.+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 3567899999999999999999998888754
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.87 E-value=0.82 Score=33.81 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998853
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.71 E-value=5.2 Score=41.12 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=47.8
Q ss_pred HhccchHHHHHHHHHHHhc----c--c---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHH
Q 004984 394 LLRKEYDEAEHLFEAAVNA----G--H---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~----~--~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eA 464 (721)
.....+++|++.|.-||-. + + +..+..+|.+|..+|+.+.....+ ..|
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl-----------------------~~A 144 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL-----------------------RKA 144 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH-----------------------HHH
Confidence 3445788888888877643 1 1 112223444555555533332222 555
Q ss_pred HHHHHHHHhcCCC--C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 465 WEDLDKATALDPT--L----SYPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 465 l~d~~kAieLdP~--~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
+..|.+|++-... . ....+-+|.+.+++|++++|+.-|.++|.-
T Consensus 145 l~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 145 LEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 6666666655433 1 123334555555666666666666655543
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.65 E-value=5.7 Score=37.91 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 480 YPYMYRASSLMTKQN---VEAALAEINRILG-FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~---~~eAl~~~~kAL~-l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
...+++|-++....+ .++.|..+...++ -.|. -++.|.++..+.++|+|+.|++.++..++.+|+|.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455666777766544 6788999999996 4453 57788899999999999999999999999999984
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.61 E-value=12 Score=38.60 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
+.+..|++..++|++++|++++.+.+...-.+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 566788888888888888888888887665554
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.19 E-value=1.3 Score=49.67 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=67.0
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
+..++.|++..+||+..|++.++ -|.++.. + -|. ..-|-+...|++.|-+|++++||.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~-~idl~~~--------~----------l~~---~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLE-NIDLNKK--------G----------LYT---KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhh-ccCcccc--------h----------hhc---cCcchheehHHHHHHHHHHHHHHH
Confidence 46688899999999999998865 3333321 1 122 123445667899999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCc
Q 004984 497 AALAEINRILGFKLALE-CLELRFCFFL-ALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 497 eAl~~~~kAL~l~P~~~-~~~~R~~~~~-~lgd~eeAl~d~~kal~L~P~~ 545 (721)
+|+..|+.+|-.--... .++.+..-+. -.+..|+....+-=++.+.|.-
T Consensus 182 DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~ 232 (404)
T PF10255_consen 182 DAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQR 232 (404)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCC
Confidence 99999999985421111 1111111111 1244555666666666777753
No 353
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.81 E-value=0.88 Score=49.58 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (721)
+-.-.-+++.+|....+|+++|..+..+.++++|++++..|...+|++....-
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 33344555567777777777777777777777777777777777777665433
No 354
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.44 E-value=1.1 Score=48.80 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=62.9
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHH
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d 467 (721)
+.|.-.+..++|++|..-|.+++...+. ...-+......+ ...+.... ..+..+.+..-... ..+..|+..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~~~~e~~~~-~~~~~~~r--~~~~~n~~~~~lk~---~~~~~a~~~ 297 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSE---QSRDREKEQENR-IPPLRELR--FSIRRNLAAVGLKV---KGRGGARFR 297 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcc---cccccccccccc-cccccccc--cccccchHHhcccc---cCCCcceec
Confidence 4577788888999999988888765322 000000110000 00000000 00011111111111 222555555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL 512 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~ 512 (721)
-.-+++.+|..+.||+.||..++.+.++++|+.++..+...+|+.
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 556666777777788888888888878888888877777777753
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.24 E-value=1.3 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQL 629 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (721)
+.+++++|.++..+|++++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788999999999999999998763
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.56 E-value=19 Score=36.03 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc----chhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAG----HIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~----~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (721)
+-+.-..+-+.-++|...|...=+-+ |.-|..-.|.+..+.|+..+|+..|..+-.
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44445556677788888777643333 222344456677888888888888875443
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.43 E-value=9 Score=43.46 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=91.7
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (721)
Q Consensus 492 lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (721)
.|+...|-.-...++.-.|. |+...+++.+...+|+||+|.++..-+-.+=..- ..+.+.+..-..-+.+|+.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHHH
Confidence 56677777777777777775 6666778888888899988888776554421111 1234444444555566666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHH-H
Q 004984 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWI-L 648 (721)
Q Consensus 571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~-L 648 (721)
| ++.-.-+|...-..++...--+..-..+|.+++|.-...+.+.++|......+| +... +
T Consensus 376 a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 376 A------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred H------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence 6 233333333333333333222333345688999999999999999864432222 1111 2
Q ss_pred HhcC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984 649 YDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (721)
Q Consensus 649 y~~G-~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (721)
+..| -|.||... -|.-|+-...|.--|..|+
T Consensus 438 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 469 (831)
T PRK15180 438 FNDGNAFSEAFHA---GIQSQRLNDTFMETALSLA 469 (831)
T ss_pred ccCcchHHHHHHh---hhhhhhhhHHHHHHHHHHH
Confidence 2223 25555433 3334444445555555444
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.36 E-value=6.6 Score=33.92 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH---HHHhcCCHHHHHHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC---FFLALEDYQAALCDV 535 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~---~~~~lgd~eeAl~d~ 535 (721)
+...+..|.=+...++.++|+..+++|++-.++ ++.+...|+ +|...|+|.++++.-
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888999999999999999998887 566666664 699999999988753
No 359
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.28 E-value=16 Score=36.34 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHh
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQERS 456 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~~rg 456 (721)
..++..+|.-+...|++++|.+.|.++.+. + ..+.+..+-++....|++......++++-..-..- .|...++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr- 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR- 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH-
Confidence 367788999999999999999999998776 1 24455667788888999998877777665543221 1222222
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 457 ~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
.-..-|..++..++|.+|-..|-.++
T Consensus 115 ------------------------lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 ------------------------LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ------------------------HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22345677777888888888887766
No 360
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.89 E-value=4.3 Score=42.42 Aligned_cols=61 Identities=20% Similarity=-0.002 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHh
Q 004984 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCFFLA 524 (721)
Q Consensus 464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-P~~~~~~~R~~~~~~ 524 (721)
|...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++.-. |-+.+..+...++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999753 445555666666555
No 361
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.86 E-value=55 Score=32.87 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
+--+|++-.+-|++..|...|.+..+ +...+....+++.+..++
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 33455566667777777777776666 666666666777666553
No 362
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.74 E-value=3.8 Score=42.86 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
|++.|++|+.+.|+++..|+.+|.+....|+.=+|+=.|-||+...-.|. |.-|-.-.+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888755556 66665555554
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.71 E-value=70 Score=33.96 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=99.1
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CC-H----HHHHHHHHHHHhcC-CHHHHHHHHHHHHhh----CCCc---hhh-hhh
Q 004984 490 MTKQNVEAALAEINRILGFK----LA-L----ECLELRFCFFLALE-DYQAALCDVQAILTL----SPDY---RMF-EGR 551 (721)
Q Consensus 490 ~~lg~~~eAl~~~~kAL~l~----P~-~----~~~~~R~~~~~~lg-d~eeAl~d~~kal~L----~P~~---~~~-~~~ 551 (721)
..+|+++-|...+.|+=.+. |+ . ...++-|.-....+ ++++|+..+++|.++ .+.. ..+ .-|
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35678888888888876654 32 1 12355666677777 999999999999887 2221 111 112
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (721)
......+ ++.|-.|...+... +...++.+-.--|+.+..++-+=.++.+.++.+++.+.++++
T Consensus 84 ~~iL~~L----------------a~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 84 LSILRLL----------------ANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHH----------------HHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 2222222 13333333334333 456777777777999999988878888899999999999999
Q ss_pred HHhCC-CChhHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 004984 631 RQHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 631 l~l~P-~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~ 666 (721)
+..-+ .+..--...+.+ .+-.-....|...+.+.+.
T Consensus 148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 98765 222221222222 2223344667777777766
No 364
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.67 E-value=6.8 Score=37.96 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
.+++.+--+.|+.++...--|.++...|++.||++.++...+-.|..+.+---+++||+-+|+
T Consensus 31 ~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 31 AMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 344444444555555555555555555555555555555555544444444445555555544
No 365
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.23 E-value=1.1e+02 Score=35.66 Aligned_cols=229 Identities=18% Similarity=0.157 Sum_probs=133.7
Q ss_pred ChhhHHHHHHHHHHhhcCCHhhHHHHHHHh-cccCChhHHHHHHHHHHhhcccCCChHHHHHHhccccccchhhhcccch
Q 004984 266 CCERLKDACDRKLASLVASREDAVELMGYA-IEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLAS 344 (721)
Q Consensus 266 ~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A-~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~~r~~~v~~~~ 344 (721)
-++.++..|.++|+..- ...+.++--+ ..++-+.|-++|+-.++.-|.+.+.. ++.+-+|..-+ ..|..-
T Consensus 29 ~~~~~~~ic~~hl~~~k---~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~-~~veh~c~~~l-----~~~e~k 99 (711)
T COG1747 29 ILDVLKGICDEHLAHSK---NSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKN-QIVEHLCTRVL-----EYGESK 99 (711)
T ss_pred HHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHH-HHHHHHHHHHH-----HhcchH
Confidence 34678899999998754 2334444332 34555677788886666655554443 33444443221 244444
Q ss_pred hhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHH
Q 004984 345 FSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLAR 423 (721)
Q Consensus 345 ~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~ 423 (721)
..++..+.-...+ ..+.+..+.||+++..-+ +.+-.-.+...+ +.++-..|...|.+|+.. =+..-..+.-.
T Consensus 100 mal~el~q~y~en---~n~~l~~lWer~ve~dfn---Dvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~e 172 (711)
T COG1747 100 MALLELLQCYKEN---GNEQLYSLWERLVEYDFN---DVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKE 172 (711)
T ss_pred HHHHHHHHHHHhc---CchhhHHHHHHHHHhcch---hHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHH
Confidence 4555555544333 566888999998874322 233333444444 448889999999999865 11111111111
Q ss_pred HHHH----hCCHHHHHHHHHHHHhc--CCCcHHHHHHH--hhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Q 004984 424 LGYI----KGHKLWAYEKLNSVISS--VTPLGWMYQER--SLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT- 491 (721)
Q Consensus 424 ~~~~----~G~~~~A~~~~~~aI~~--~~~~~~ay~~r--g~~---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~- 491 (721)
++.+ .|+-.+-.-...+-|+- ....+...++. ..| ....+|+.-....+++|-.+..|..++-.-+++
T Consensus 173 vWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 173 VWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 2221 13322222222222221 22344444333 222 234899999999999999999998888887877
Q ss_pred -------------------cCCHHHHHHHHHHHHhcCC
Q 004984 492 -------------------KQNVEAALAEINRILGFKL 510 (721)
Q Consensus 492 -------------------lg~~~eAl~~~~kAL~l~P 510 (721)
-.++.+|+.+|.+-+-++-
T Consensus 253 y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 253 YRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred hccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 7789999999999988765
No 366
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.98 E-value=2.2 Score=45.37 Aligned_cols=85 Identities=9% Similarity=0.188 Sum_probs=62.1
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC---cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHH
Q 004984 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~---Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~L 258 (721)
-+|..+++..|-..+.+|-+.- .-.-.||.+++. -....+.++-+ ||+..+|+++|+|--||.+.-.+.-.|-+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 4788888889999988885432 234577877653 23346778877 999999999999999999872223356777
Q ss_pred HHHhhhcChh
Q 004984 259 LIFANKFCCE 268 (721)
Q Consensus 259 L~aAd~~~v~ 268 (721)
-.+.|+++++
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 7777777665
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.90 E-value=43 Score=37.21 Aligned_cols=84 Identities=12% Similarity=-0.054 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhcCCC-ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc--CC----CHHHHHHHHHHHHhcCCH-----
Q 004984 462 DKRWEDLDKATALDPT-LSYPYMY-RASSLMTKQNVEAALAEINRILGF--KL----ALECLELRFCFFLALEDY----- 528 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~-~~~ay~~-rg~~l~~lg~~~eAl~~~~kAL~l--~P----~~~~~~~R~~~~~~lgd~----- 528 (721)
.-|++...-.+.|||+ ++..-.. +-..-.+.++|+-=+.-++..... .. -|...+..+.++..+++-
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~ 199 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQS 199 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccc
Confidence 7777777777788887 5433322 333334455565444444443331 11 123345666777777777
Q ss_pred ----------HHHHHHHHHHHhhCCCc
Q 004984 529 ----------QAALCDVQAILTLSPDY 545 (721)
Q Consensus 529 ----------eeAl~d~~kal~L~P~~ 545 (721)
++|-....+|+..-|.-
T Consensus 200 ~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 200 SAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccccccccchhHHHHHHHHHHHHhHHH
Confidence 78888888888887774
No 368
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.51 E-value=84 Score=37.67 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
.|+.+.|..+.++...++|...|.+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888888888888888888887764
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.28 E-value=6.3 Score=44.07 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 423 RLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (721)
Q Consensus 423 ~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~ 502 (721)
..++++|+|..|...|..|+++-.+-+ +.-.- .+ -..+-+....-+ .--.+..+|..+++.+-|+...
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~-a~~k~-~~-~~~~di~~vaSf---------Ietklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGA-ALSKP-FK-ASAEDISSVASF---------IETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhh-hccCC-CC-CChhhHHHHHHH---------HHHHHHHhhhhcCCCchHHHHH
Confidence 347888888888888888887632100 00000 00 000001111111 1133555666666666666666
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
-|.|.+||. +..+.-++.++..+.+|.+|-+.+--
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665 33333345566666666666554433
No 370
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.74 E-value=62 Score=37.56 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
+...+.+.+...+.|+.+-...+.|..+..+|+.+.|+..++..+. +. .-+++-|+|++.-+-+|..|-.+++
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344455667778899999999999999999998888888888886 32 2234568888888888888877777
Q ss_pred HHHhhCCCchhhhhhHH-----------H-------------HHHHHHHHH-------hhhhhhHHHHHH----------
Q 004984 537 AILTLSPDYRMFEGRVA-----------A-------------SQLHMLVRE-------HIDNWTIADCWL---------- 575 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~-----------a-------------~~~~~~l~~-------~~~~~~~A~~~~---------- 575 (721)
....++.=...++..-+ . .....++.. ..--..++.-|.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 76665543222111111 0 000001111 000011111111
Q ss_pred ------hhhhccccccccc--hHHHHHHHHHh----CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---
Q 004984 576 ------QLYDRWSSVDDIG--SLSVIYQMLES----DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS--- 636 (721)
Q Consensus 576 ------~l~~~~~~~dd~~--al~~~~qaL~l----~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---~P~--- 636 (721)
.+.-.|....... .+.-++..++. |+.+ ..-++-+|.+|-.||+.+.|...+..+++- ...
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 1222233332222 22333444433 2222 223788999999999999999999998833 222
Q ss_pred -ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCH
Q 004984 637 -DHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 637 -~~ea~~~~G~~Ly~~G~-~deAl~~ye~Ai~i~~~~ 671 (721)
-+.|+|-+|..+.++|. +.||.+..+||-+-.-++
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 46789999999999999 999988888887654433
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.72 E-value=37 Score=40.07 Aligned_cols=187 Identities=15% Similarity=0.036 Sum_probs=104.9
Q ss_pred HHHHHHHhccchHHHHHHHHH------HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh----c-CCC-cHHHHHHH
Q 004984 388 QLGCVRLLRKEYDEAEHLFEA------AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS----S-VTP-LGWMYQER 455 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~------AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~----~-~~~-~~~ay~~r 455 (721)
.++.+..-.|.+.||.+.|.+ |++.--.--++..+.-+...|+.++--..+++-.+ . .|. -+.++..-
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSa 716 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISA 716 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcc
Confidence 455566667777888777763 55541111123333334444544444333332211 1 121 23344444
Q ss_pred hhcCChhHHHH----------HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 004984 456 SLYCEGDKRWE----------DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL 525 (721)
Q Consensus 456 g~~~~~~eAl~----------d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~l 525 (721)
|.. ++|+. .++-+-.|+-..-++....+.-+..+..+.-|-+.|.+.=..+ ..-.++.+.
T Consensus 717 Ge~---~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~ 786 (1081)
T KOG1538|consen 717 GEH---VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVET 786 (1081)
T ss_pred cch---hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeec
Confidence 433 44443 2455556677777777777777777777777777776643111 122457788
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~ 605 (721)
|+|.+|.+--++-.++-|+-.+-+ +.-....+++++|.
T Consensus 787 ~~W~eAFalAe~hPe~~~dVy~py---------aqwLAE~DrFeEAq--------------------------------- 824 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDVYMPY---------AQWLAENDRFEEAQ--------------------------------- 824 (1081)
T ss_pred ccchHhHhhhhhCccccccccchH---------HHHhhhhhhHHHHH---------------------------------
Confidence 999999988777777766632212 12223345566663
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
-++.+.|+..||++.+++.-.
T Consensus 825 ------kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 ------KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ------HHHHHhcchHHHHHHHHHhhh
Confidence 145777999999988887654
No 372
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.53 E-value=29 Score=36.25 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~ 558 (721)
+.++|.+..+.|||++++..+.+++..+|+ .+--.....+| ...|..-.+.+-+....+-......-.....+...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 567899999999999999999999999885 33333444332 344445555555544444333320000001111111
Q ss_pred HHHHHh-hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-----------hHHHHHHHHHHH---cCChHHH
Q 004984 559 MLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-----------VLYFRQSLLLLR---LNCPEAA 623 (721)
Q Consensus 559 ~~l~~~-~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~-----------~~~~~~g~~L~~---lg~~eeA 623 (721)
..+... ....... +..++.-|--...++ ++|-.++.+... ..-.+.|
T Consensus 84 ~kie~EL~~~C~ei------------------i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 84 KKIEDELIDICNEI------------------IRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 222221 1111111 223333222222222 222222222111 1123678
Q ss_pred HHHHHHHHH-----hCCCChhHH---HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC--CCchh
Q 004984 624 MRSLQLARQ-----HAASDHERL---VYEGWIL-YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD--SSCSS 692 (721)
Q Consensus 624 l~~~~~Al~-----l~P~~~ea~---~~~G~~L-y~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~--~~~~~ 692 (721)
...|++|+. +.|.++-.+ .|.+.-+ --+|+.++|+...++|+ -.|..--|+-=| -.-|.
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af----------d~a~~~l~~l~e~~~~d~~ 215 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF----------DEAISELDTLSEESYKDST 215 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH----------HHHHHGGGGSHTTTHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HHHHhhhcccchhhhHHHH
Confidence 888888776 567776432 1222223 33799999999999984 344444443111 22356
Q ss_pred hHHHHHHHhh
Q 004984 693 TVVSLLEDAL 702 (721)
Q Consensus 693 ~~~~~~~~~~ 702 (721)
.++|||-|=|
T Consensus 216 ~ilqlLrdNl 225 (236)
T PF00244_consen 216 LILQLLRDNL 225 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788887643
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.77 E-value=6.8 Score=34.56 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=39.1
Q ss_pred HhccchHHHHHHHHHHHhc----c-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984 394 LLRKEYDEAEHLFEAAVNA----G-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV 445 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~----~-------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (721)
...|+|.+|++.+.+.... + ...+..++|.++...|++++|+..+++||++-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4678888887776665443 1 23566778889999999999999999888763
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.70 E-value=18 Score=35.07 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=53.4
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
.+++.++...+....-+.|+.++.....||++..-|+++||+..+++..+--+++.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 79999999999999999999999999999999999999999999999999888865
No 375
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.64 E-value=24 Score=35.13 Aligned_cols=92 Identities=12% Similarity=-0.006 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~----~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
.+|..+|.-|.+-|++++|+..|.++.....++. .+...-.+....||+..+.....+|-.+-..-..+.-+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677788888888888888888888776654432 233344567777888888888888777544321122222223
Q ss_pred HHHHHHHHhhhhhhHH
Q 004984 556 QLHMLVREHIDNWTIA 571 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A 571 (721)
...+...-..+++..|
T Consensus 117 ~~~gL~~l~~r~f~~A 132 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEA 132 (177)
T ss_pred HHHHHHHHHhchHHHH
Confidence 3333334445555555
No 376
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.60 E-value=66 Score=35.39 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
....+.|.-||+.++++.|.-+|+||.+-.-....++ -+..+.|+++.+.+ ..+|++
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~--------~~ei~ka~~e~ds~-k~~~N~ 182 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFY--------YEEVQKAIKEIDSS-KHNINM 182 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc-cCCCch
Confidence 3567789999999999999999999985422111111 11245555655544 467776
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.44 E-value=7.5 Score=37.13 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHH---cCChHHHHHHHHHHHH-hCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 004984 604 GVLYFRQSLLLLR---LNCPEAAMRSLQLARQ-HAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK 677 (721)
Q Consensus 604 ~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~-l~P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~ 677 (721)
....|+.+.+|.+ ..+.++.+..+...++ -.| ..-+=+||++...|++|+|++|+..-+.-++.+||+. |=-||
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567888888887 4456678888888886 333 3456788999999999999999999999999999887 65555
Q ss_pred H
Q 004984 678 A 678 (721)
Q Consensus 678 ~ 678 (721)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 378
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.16 E-value=79 Score=34.66 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc----hHHHHH
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG----SLSVIY 594 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~----al~~~~ 594 (721)
+.+-.++|+..+|++-++...+--|-..+...+. .+++..++-..-||+.. .+.++||+. |..+|.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe------NLiEalLE~QAYADvqa----vLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE------NLLEALLELQAYADVQA----VLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH------HHHHHHHHHHHHHHHHH----HHHhhccccCcchHHHHHH
Confidence 4567788888888888888777777543322221 12222222222233322 222334443 334555
Q ss_pred HHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984 595 QMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 595 qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
.||-. +-=.++.-.++|+.-..++ |++.+.+|.+.||.-+
T Consensus 352 aALLK~RAVa~kFspd~asrRGLS~AE~~----AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 352 AALLKTRAVSEKFSPETASRRGLSTAEIN----AVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHhhcCchhhhhccccHHHHH----HHHHHHHHhhcCCCCc
Confidence 55422 1224444555665555443 6777788999998755
No 379
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.89 E-value=98 Score=31.65 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=47.5
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCHHHHHHHHH
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFK-----LALECLELRFC 520 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~--~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-----P~~~~~~~R~~ 520 (721)
-...|+.-.+.|+ ++|..-|- +++-.|. .++-.+.+|..|. ..+.+.|+..+.++|++. ++++.+..++.
T Consensus 110 P~llYy~Wsr~~d-~~A~~~fL-~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 110 PYLLYYHWSRFGD-QEALRRFL-QLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred ccHHHHHhhccCc-HHHHHHHH-HHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3444555444322 44554443 2233333 3455555666665 556777888888888773 23566666777
Q ss_pred HHHhcCCHHHH
Q 004984 521 FFLALEDYQAA 531 (721)
Q Consensus 521 ~~~~lgd~eeA 531 (721)
++..+|+++.|
T Consensus 187 ~~~~~~~~e~A 197 (203)
T PF11207_consen 187 IYQKLKNYEQA 197 (203)
T ss_pred HHHHhcchhhh
Confidence 88888887776
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.74 E-value=3e+02 Score=37.69 Aligned_cols=286 Identities=17% Similarity=0.099 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----------------
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL---------------- 448 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~---------------- 448 (721)
.|.+.+.+....|+++.|..+.-+|-+...+.++..+|...-.+|+-..|+..+++.++.+-+.
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i 1751 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI 1751 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh
Confidence 3455555556679999999999999888888888889999999999999999999999764221
Q ss_pred -HHHHHHHhhc------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004984 449 -GWMYQERSLY------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCF 521 (721)
Q Consensus 449 -~~ay~~rg~~------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~ 521 (721)
+.+....+.| ...+.=+..|..|+++.|..-..|+.+| ..|+|.++-.+ +..
T Consensus 1752 ~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~-------------~yy~kll~~~~--------~~~ 1810 (2382)
T KOG0890|consen 1752 FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG-------------KYYDKLLEDYK--------SNK 1810 (2382)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH-------------HHHHHHhhhhh--------ccc
Confidence 1122222222 1113345678889999998888888888 22222222111 112
Q ss_pred HHhcCCHHH---HHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch-HHHHHHH
Q 004984 522 FLALEDYQA---ALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS-LSVIYQM 596 (721)
Q Consensus 522 ~~~lgd~ee---Al~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a-l~~~~qa 596 (721)
..+.|++.. |+--|.+++.-+-++.. +..|+-...+- +......|+.| --.+..+ .+.+. -..++.+
T Consensus 1811 ~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD--~~t~~~~~ek~----~r~ei~s--~~~~~in~~i~~~ 1882 (2382)
T KOG0890|consen 1811 MEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLD--IGTHISSVEKA----PRGEIVS--KNLKLINSLIEEA 1882 (2382)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHh--hcchhcccccC----Chhhhhh--hhHHHHHHHHHHH
Confidence 234455544 55555666665555421 12222222211 00111111111 0000000 01110 1145556
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHH-H----HHHHHHHHHhCCCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEA-A----MRSLQLARQHAASDHERLVYEGWILYDT--SHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~ee-A----l~~~~~Al~l~P~~~ea~~~~G~~Ly~~--G~~deAl~~ye~Ai~i~~ 669 (721)
+..-|... .|+-.+-++.|+-.+.+ - +.+.-+.+.--|.. ++|...-+.-.+ .+.+.+-...++++...+
T Consensus 1883 ~~~lp~Y~-f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq--~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~ 1959 (2382)
T KOG0890|consen 1883 LEHLPTYQ-FYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQ--TLWQSAALSKSNVPSRVERCKEILTKSRRQKP 1959 (2382)
T ss_pred HHhCcchH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Confidence 66666643 23344445555443332 1 22223333333432 222222221111 456666667779999999
Q ss_pred CHHHHHHHHHHhhcc-----CCCCCchhhHHHHHHHhhc
Q 004984 670 SFEAFFLKAYALADS-----SQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 670 ~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 703 (721)
+++.++--++-|.|. +-+..+|++|.+| ++-+|
T Consensus 1960 ~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl-~t~F~ 1997 (2382)
T KOG0890|consen 1960 DYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSL-KTDFR 1997 (2382)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCcccccccH-HHHHH
Confidence 999999888888773 3344446666664 44344
No 381
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.56 E-value=11 Score=47.43 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhc-------cc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CCC
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNA-------GH---IYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VTP 447 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~~~ 447 (721)
....|......|.+.+|.+ ..+++.. -| ...+-.++++++..|++++|+..-.+|.-+ .|+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 3566777777788887777 4444433 12 334677899999999999999888776654 344
Q ss_pred cHHHHHHHhhc----CChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Q 004984 448 LGWMYQERSLY----CEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---- 511 (721)
Q Consensus 448 ~~~ay~~rg~~----~~~~eAl~d~~kAieL--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---- 511 (721)
....|.+...+ .....|+..+.+|..+ -|.-+..-.+++.++..+++++-|+.....|++++-.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 55566665443 2336677777777665 4666667788999999999999999999998876422
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 512 -----LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 512 -----~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..++...+.++..+|++..|+...+....
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 12223344455555555555555554443
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.55 E-value=16 Score=41.86 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNC-PEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea 640 (721)
-.+|.+||..+|+++++|..-+.=+..-|. .+.|...+.++++.+|+++..
T Consensus 125 ~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 125 KKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 348999999999999999999988888887 999999999999999998854
No 383
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.80 E-value=24 Score=34.74 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=72.8
Q ss_pred ccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCC----cceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHH
Q 004984 182 RNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESL----CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (721)
Q Consensus 182 ~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~----~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~ 257 (721)
.=|.|.|||..|-.-|.-|.--+.-|..-|...-.+.. ..--.+- +=+|.-|..+|+|+..|++- ++.-.-..
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklv-l~~l~eeG 97 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLV-LNKLSEEG 97 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhh-hhhhhhhc
Confidence 34778899999999999998888778777765432221 1112222 26799999999999999998 88766678
Q ss_pred HHHHhhhcChhhHHHHHHHHHHhh
Q 004984 258 ILIFANKFCCERLKDACDRKLASL 281 (721)
Q Consensus 258 LL~aAd~~~v~~L~~~C~~~L~~~ 281 (721)
+|.-|++|.++.|...-.+.+...
T Consensus 98 vL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHH
Confidence 999999999999887766655543
No 384
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.89 E-value=9.1 Score=42.87 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=66.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHH--HHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHH
Q 004984 389 LGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKL--WAYEKLNSVISSVTPLGWMYQERSLYCEGDKRW 465 (721)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~--~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl 465 (721)
-+.....+|.|..|+.-|..||++ ....+ .|+.- .+-..+.-+--+.+.+...|...++- +-|+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a----------~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp---dlAL 248 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAA----------LSKPFKASAEDISSVASFIETKLVTCYLRMRKP---DLAL 248 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhh----------ccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC---chHH
Confidence 355666778888888888888877 11100 01100 00000111111233445555555444 7788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
..--+.|.+||.+.-.+..+|.+...+.||.||-..+--|.
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999987766655
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.58 E-value=10 Score=27.64 Aligned_cols=21 Identities=14% Similarity=-0.017 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 004984 481 PYMYRASSLMTKQNVEAALAE 501 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~ 501 (721)
.++..|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555555
No 386
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.41 E-value=16 Score=39.09 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
..++..++..+...|+++.+++.+++-|+.+|- -..|...-.+|...|+...|+..|++.-++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677888899999999999999999999995 454555556899999999999999988775
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.13 E-value=24 Score=30.21 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=10.5
Q ss_pred HHHHHHhccchHHHHHHHHHHHh
Q 004984 389 LGCVRLLRKEYDEAEHLFEAAVN 411 (721)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~ 411 (721)
.++-+...|++.+|+.+|++||+
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 33344444455555554444433
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.66 E-value=13 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 004984 639 ERLVYEGWILYDTSHCEEGLRK--AEESIQMKR 669 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~--ye~Ai~i~~ 669 (721)
|.++.+|-.+|.+|++++|+.. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3445556666666666666666 445555544
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.57 E-value=43 Score=34.76 Aligned_cols=96 Identities=18% Similarity=0.060 Sum_probs=64.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHH----HHHHhhcc--
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFL----KAYALADS-- 684 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~--a~~~----~~~~~~~~-- 684 (721)
.|++-|...+|+...+.-++-+|.++.-...+=.+|.-.|++++|+...+-+-.+.|+|- +-.. +..++-+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 466777888888888888888888887777777777778888888888888888887765 1111 12221111
Q ss_pred --CCCC---C-chhhHHHHHHHhhcCCCCc
Q 004984 685 --SQDS---S-CSSTVVSLLEDALKCPSDR 708 (721)
Q Consensus 685 --~~~~---~-~~~~~~~~~~~~~~~~~~~ 708 (721)
..-| - -|.--|..|-.||.|-|||
T Consensus 90 ag~~~Pgflg~p~p~wva~L~aala~h~dg 119 (273)
T COG4455 90 AGGAVPGFLGGPSPEWVAALLAALALHSDG 119 (273)
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHHhcccCC
Confidence 1111 1 2445567778899999986
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.46 E-value=2.7e+02 Score=33.57 Aligned_cols=284 Identities=10% Similarity=-0.025 Sum_probs=145.7
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh---h
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG---D 462 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~---~ 462 (721)
.+.-+...+..|++.++.+.-.+ +.-.+...|.....+....+. .....+...++.+|+.+..-.-|..+... .
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPT-LKDYPLYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-ccCCCcHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 44556666777777776554443 322333333333333332232 12346677788888876666555443100 2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHHHHHHH
Q 004984 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELRFCFFL 523 (721)
Q Consensus 463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~~----------------~~~~~R~~~~~ 523 (721)
+...+|.+.-.-.|.+.......+.++...|+-++|.+...++.--. |+. +.+..|.....
T Consensus 113 ~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al 192 (644)
T PRK11619 113 EDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAM 192 (644)
T ss_pred cCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 22333444222358888888999999999999999998888886543 221 11222333344
Q ss_pred hcCCHHHHHHHH-------------HHHHhhCCCchhhh-hhH------HHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984 524 ALEDYQAALCDV-------------QAILTLSPDYRMFE-GRV------AASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (721)
Q Consensus 524 ~lgd~eeAl~d~-------------~kal~L~P~~~~~~-~~~------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (721)
..|+...|-.-. ..++.-+|...... ... .-....+.-+...++.+.|..+.+-......
T Consensus 193 ~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 193 KAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQK 272 (644)
T ss_pred HCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 445444443322 22333344422100 000 0001111112233333334322211100000
Q ss_pred cc--------------------ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984 584 VD--------------------DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (721)
Q Consensus 584 ~d--------------------d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (721)
.. +..+...++.+. ..+.+...+..+-.+-.+.++++.+...+...-.-..+....+|.
T Consensus 273 ~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~-~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 273 LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI-MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc-cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH
Confidence 00 111111122111 111223333333334448899988887777755545567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (721)
Q Consensus 644 ~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~ 674 (721)
+|-.+..+|+-++|-..|+++.. .++|=.|
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~-~~~fYG~ 381 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ-QRGFYPM 381 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc-CCCcHHH
Confidence 99999999999999999999854 6776544
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.93 E-value=70 Score=33.28 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 488 ~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
-+.+.++.++||...+.-++-+|. ..+-+....++.-.|+|+.|..-++-+-+++|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 577888999999999999999995 66666777889999999999999999999999983
No 392
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.85 E-value=24 Score=30.24 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=8.7
Q ss_pred HHHHHhccchHHHHHHHHHHH
Q 004984 390 GCVRLLRKEYDEAEHLFEAAV 410 (721)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL 410 (721)
++-....|+|++|+.+|.+||
T Consensus 13 Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333334444444444444433
No 393
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.83 E-value=2.7e+02 Score=33.67 Aligned_cols=141 Identities=13% Similarity=0.034 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHH
Q 004984 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI---SSVTPLGWMYQER 455 (721)
Q Consensus 379 ~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI---~~~~~~~~ay~~r 455 (721)
.-..-.|+.++|.-...+..+++|.++|.+.=.. .+...+++++.++++=.....+.= ++.|..|.++..+
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhh
Confidence 3344578899999999999999999999874222 233445666666554333222111 2345678888888
Q ss_pred hhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 004984 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELR-FCFFLALEDYQAALCD 534 (721)
Q Consensus 456 g~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R-~~~~~~lgd~eeAl~d 534 (721)
|.+ ++|.+.|-|- -+|.-+ . .+-.++++..+|++-.++-- =|....+..+ +.-+++.++..+||+-
T Consensus 866 GMC---~qAV~a~Lr~--s~pkaA-----v-~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~ 932 (1189)
T KOG2041|consen 866 GMC---DQAVEAYLRR--SLPKAA-----V-HTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEK 932 (1189)
T ss_pred chH---HHHHHHHHhc--cCcHHH-----H-HHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHH
Confidence 888 7777665321 112111 0 12234455555555433311 1334444443 3446777888888888
Q ss_pred HHHH
Q 004984 535 VQAI 538 (721)
Q Consensus 535 ~~ka 538 (721)
+++|
T Consensus 933 ~Rka 936 (1189)
T KOG2041|consen 933 DRKA 936 (1189)
T ss_pred hhhc
Confidence 8777
No 394
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.19 E-value=36 Score=29.18 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=22.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHH
Q 004984 424 LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYP 481 (721)
Q Consensus 424 ~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~a 481 (721)
-+.+.|++.+|+..|+ +|++.+.+++.+.||.+.-
T Consensus 15 e~D~~gr~~eAi~~Y~-----------------------~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 15 KAEKEGNAEDAITNYK-----------------------KAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHhcCCHHHHHHHHH-----------------------HHHHHHHHHHHhCCChHHH
Confidence 3566688888877764 4555556666666666543
No 395
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.86 E-value=39 Score=35.20 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCc
Q 004984 524 ALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 524 ~lgd~eeAl~d~~kal~L~P~~ 545 (721)
..++.+.|+..+++|+++||+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 5578899999999999999984
No 396
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.40 E-value=72 Score=40.69 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh--hhhh
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM--FEGR 551 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~--~~~~ 551 (721)
.-.|..-+..|.+++|.+ +.+++.+ .|+ ..++...+.++..+||+++|++.-+++.-+.-.-.- ....
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 346667777778888888 5555544 344 566777888999999999999998777664432100 1111
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCChHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l--------~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
...+..+........+ -.+|+..+.+++.+ .|.-+....+.+.++.-++..+-|
T Consensus 1015 ~~~y~nlal~~f~~~~------------------~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKN------------------LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HHHhhHHHHHHHhccC------------------ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 2222222222222222 22356777777664 688888889999999999999999
Q ss_pred HHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 624 MRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 624 l~~~~~Al~l~P~~~e-a~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
++..+.|+..+-.-.. -..--|.++-..++.-++...++.|+..
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999996543222 1112233444445555555566555543
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.39 E-value=41 Score=38.48 Aligned_cols=135 Identities=14% Similarity=0.076 Sum_probs=95.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 004984 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (721)
Q Consensus 524 ~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~ 603 (721)
.-||.-.|-+-...++.-.|..+. ..++...+.+++.+++.+-. - ++..+.+|.....-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~------~i~l~~~i~~~lg~ye~~~~------~---------~s~~~~~~~s~~~~ 359 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV------LIQLRSVIFSHLGYYEQAYQ------D---------ISDVEKIIGTTDST 359 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch------hhHHHHHHHHHhhhHHHHHH------H---------hhchhhhhcCCchH
Confidence 458888999999999998888743 45667777888888888732 1 22333444332111
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------HH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----------EA 673 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~----------~a 673 (721)
.--+=.-+.++||+.+|.....--+.-.-.++|....-+-.--.+|-+|||+-.+.|.+.|+|.- ..
T Consensus 360 ---~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 360 ---LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred ---HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 11122346789999999999888887777777776666666667889999999999999998843 25
Q ss_pred HHHHHHHhh
Q 004984 674 FFLKAYALA 682 (721)
Q Consensus 674 ~~~~~~~~~ 682 (721)
||+-|-|+.
T Consensus 437 ~~~~~~~~~ 445 (831)
T PRK15180 437 YFNDGNAFS 445 (831)
T ss_pred eccCcchHH
Confidence 777776654
No 398
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=62.33 E-value=4.6 Score=44.00 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=92.5
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH--HHHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN--LLLEILIF 261 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~--~v~~LL~a 261 (721)
+++......+++|+.+|...|+.|..+....-.-+....+.+. +++...+..+..|.|.+ ++ -.+. .+..++..
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 3444456779999999999999998877654222223455566 58889999999999998 55 3333 34556666
Q ss_pred hhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHH
Q 004984 262 ANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVF 311 (721)
Q Consensus 262 Ad~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~ 311 (721)
...+-++..+..|...+..-+.+..+++..+..+..+..+.|..++...+
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~ 154 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSI 154 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 67889999999999998885556789999999998888888887775444
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.18 E-value=22 Score=38.28 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
..-+..+.+-|.+.+|+...+|++.++|- ...+...-.++..+||--.|+..|++--
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44677889999999999999999999994 5555566678999999999999887643
No 400
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.10 E-value=46 Score=41.64 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
|.-+++ |--.|+-|.=|..+|+++.++|.+.|=+++|..|++.-|+.++.-.-+-.+-|.+
T Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 539 LSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 333433 3456888999999999999999999999999999999999999888777777665
No 401
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.28 E-value=25 Score=42.31 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=50.1
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHH--HHHhcCCHHH
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRAS--SLMTKQNVEA 497 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~--~l~~lg~~~e 497 (721)
.-|+++++++++.+|.-.|..++.+.|..- ++.+.-..+.+. +++.+|++..
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~--------------------------~~~a~~~~~~~s~~m~~~l~~~~~ 111 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDH--------------------------HVVATLRSNQASCYMQLGLGEYPK 111 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccc--------------------------hhhhhHHHHHHHHHhhcCccchhh
Confidence 345667777777777555555665554100 011112222222 2333445555
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 498 ALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
++.+-+-|+...|. ...+.-|+..|..+++++-|++|..-....+|++
T Consensus 112 ~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 112 AIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 55555555555554 3333445555555555555555555555555555
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.28 E-value=17 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
.++..+...|+.....|+|++|+.+|.+||+.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34555566677777777788887777777654
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.13 E-value=1.1e+02 Score=36.10 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 646 WILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 646 ~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
.+++.+|++++++.... +-+|=.| |||-|-|.. +.-+.|+.|-.+-|.
T Consensus 729 ~~~~l~g~~~~C~~lLi---~t~r~peAal~ArtYlp-------s~vs~iv~~wk~~l~ 777 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI---STQRLPEAALFARTYLP-------SQVSRIVELWKEDLS 777 (794)
T ss_pred HHHHHcCCHHHHHHHHH---hcCcCcHHHHHHhhhCh-------HHHHHHHHHHHHHhh
Confidence 46778899999987665 4455445 999887753 455566666655443
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.10 E-value=70 Score=38.99 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH--HH-HHHHHcCChHHHHHHHHHHH
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR--QS-LLLLRLNCPEAAMRSLQLAR 631 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~--~g-~~L~~lg~~eeAl~~~~~Al 631 (721)
.++..+.+.-+.+-+.-..++..|-++.+++.. +.-+...+ .+...|. .+ .++.+-|..++|+....+.-
T Consensus 418 ~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL------~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 418 SYLEALHKKGLANSDHTTLLLNCYIKLKDVEKL------TEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHcccccchhHHHHHHHHHHhcchHHH------HHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 333333344444444445556666666665432 22222222 1111111 11 12455677777766544432
Q ss_pred HhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (721)
Q Consensus 632 ~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye 662 (721)
. --+++-.++-++|+|+||++..+
T Consensus 491 ~-------he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 491 K-------HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred c-------CHHHHHHHHHHhcCHHHHHHHHh
Confidence 2 22556677888889999986653
No 405
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.36 E-value=9.6 Score=41.15 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCChhHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 592 VIYQMLESDAPKGVLYFR-QSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~-~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
++.++|..+|.++++|.. -+.-+.-.+..+.+...+.+++++||+++-.+
T Consensus 129 I~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 129 IFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 689999999999999987 66777889999999999999999999998543
No 406
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.91 E-value=21 Score=37.23 Aligned_cols=33 Identities=30% Similarity=0.195 Sum_probs=24.0
Q ss_pred HHHHHHHHHH---------HcCChHHHHHHHHHHHHhCCCCh
Q 004984 606 LYFRQSLLLL---------RLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 606 ~~~~~g~~L~---------~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
+|--.|.+++ ..+.++.|+..+++|++++|+-+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 3444566663 34678889999999999998855
No 407
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.42 E-value=2.8e+02 Score=32.82 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHHhc--------------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc-----------------
Q 004984 396 RKEYDEAEHLFEAAVNA--------------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISS----------------- 444 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~--------------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~----------------- 444 (721)
...|++|+..|.-|+.. -|.+.+..++.+...+||.+-|-....++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34678888888877654 14556777899999999999998888777631
Q ss_pred ----CCCcHHHHHHH-----hh--cCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 004984 445 ----VTPLGWMYQER-----SL--YCEGDKRWEDLDKATALDPT-LSYPYMYRASSLM-------TKQNVEAALAEINRI 505 (721)
Q Consensus 445 ----~~~~~~ay~~r-----g~--~~~~~eAl~d~~kAieLdP~-~~~ay~~rg~~l~-------~lg~~~eAl~~~~kA 505 (721)
+|.+-..|... .. -|=..-|++...-.+.|||. ++.+-...-.+|. =.=++.++.+-.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 22232222211 11 12227788888889999999 7655444433332 222333333333333
Q ss_pred HhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 004984 506 LGFKLALECLELRFCFFLALED---YQAALCDVQAILTLSPD 544 (721)
Q Consensus 506 L~l~P~~~~~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~ 544 (721)
- +=|+...-...+.+|..... -+.|+.++.+|+..-|.
T Consensus 411 ~-~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 S-QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred h-hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2 23664433445555555554 78899999999999996
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.42 E-value=4.2e+02 Score=32.00 Aligned_cols=169 Identities=11% Similarity=-0.018 Sum_probs=104.2
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 004984 491 TKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (721)
Q Consensus 491 ~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (721)
..++.+.+...+++.-.-.- .....|-+|-++.++|+.++|...|+++.. ..+ |+|..++..+..... +
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~~---fYG~LAa~~Lg~~~~-----~- 393 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QRG---FYPMVAAQRLGEEYP-----L- 393 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CCC---cHHHHHHHHcCCCCC-----C-
Confidence 67787776666666321111 134456677777889999999999999855 333 677666655421000 0
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (721)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly 649 (721)
.. ... .. -.+.+...| -..++..|..+|...+|.+-.+.+++. . +.+-+...+.+-.
T Consensus 394 ------------~~-~~~-~~--~~~~~~~~~-----~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~ 450 (644)
T PRK11619 394 ------------KI-DKA-PK--PDSALTQGP-----EMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAF 450 (644)
T ss_pred ------------CC-CCC-Cc--hhhhhccCh-----HHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHH
Confidence 00 000 00 112222222 356888999999999999999888885 3 3456677777788
Q ss_pred hcCCHHHHHHHHHHHHhc------CC-----CHH---------HHHHHHHHhhccCCCCCchh
Q 004984 650 DTSHCEEGLRKAEESIQM------KR-----SFE---------AFFLKAYALADSSQDSSCSS 692 (721)
Q Consensus 650 ~~G~~deAl~~ye~Ai~i------~~-----~~~---------a~~~~~~~~~~~~~~~~~~~ 692 (721)
+.|.++-|+....++-.. =| .|. --++.|++--.|+.||..-|
T Consensus 451 ~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 451 NQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 889988888666554321 02 111 23456777789999997543
No 409
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=56.61 E-value=4e+02 Score=31.53 Aligned_cols=202 Identities=10% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
|..+...-.|++++.=...+...|.+-+.-.-..|+.+-|-..+.++.++ -|+ +..+..-+.+....|++..|...++
T Consensus 311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQ 390 (577)
T ss_pred ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHH
Q ss_pred HHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 537 AILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 537 kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
++.+--|++.. -..+......++.++.+.. ........++-|.+.+-. ..+++..+-...
T Consensus 391 ~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~---~~~l~s~~~~~~~~~~i~----------------~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 391 RIESEYPGLVEVVLRKINWERRKGNLEDANY---KNELYSSIYEGKENNGIL----------------EKLYVKFARLRY 451 (577)
T ss_pred HHHhhCCchhhhHHHHHhHHHHhcchhhhhH---HHHHHHHhcccccCcchh----------------HHHHHHHHHHHH
Q ss_pred H-cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004984 616 R-LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-----HCEEGLRKAEESIQMKRSFEAFFLKAY 679 (721)
Q Consensus 616 ~-lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G-----~~deAl~~ye~Ai~i~~~~~a~~~~~~ 679 (721)
+ -++.++|...+.+|+...|++.--+...-.+.+..+ ++-+.+...+-...+.++...++...|
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~ 521 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKY 521 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHH
No 410
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.36 E-value=1.8e+02 Score=34.73 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-H-H-H----HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 486 ASSLMTKQNVEAALAEINRILGFKLA-L-E-C----LELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 486 g~~l~~lg~~~eAl~~~~kAL~l~P~-~-~-~----~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
|.-+.+.++|..|+.-|.+.+.+-|. . . - ..+...+|..+.+.+.|++.|+.|-+.+|.+
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 34444444555555555555544441 1 0 0 0112234555555555555555555555554
No 411
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.22 E-value=17 Score=31.39 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 493 QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 493 g~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+.|+.|.+.+++||..+ +.|+.++|+..|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~d--------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRAD--------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhh--------------hcCCHHHHHHHHHHHHH
Confidence 34677777777777553 34777777777777776
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.72 E-value=2.2e+02 Score=31.92 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cc-hh--hHhhHHHHHH--HhCCHHHHHHHHHHHHhc
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GH-IY--SIAGLARLGY--IKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~-~~--A~~~lg~~~~--~~G~~~~A~~~~~~aI~~ 444 (721)
.......+..++|..|.+.|+..+.. .. .. .+..+...|. .+.++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455667788999999999987763 22 11 2333434333 355666776666665544
No 413
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=1.7e+02 Score=33.08 Aligned_cols=141 Identities=13% Similarity=0.010 Sum_probs=79.9
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhc----CC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCC
Q 004984 480 YPYMYR--ASSLMTKQNVEAALAEINRILGF----KL---A---LECLELRFCFFLALEDYQAALCDVQAILT---LSPD 544 (721)
Q Consensus 480 ~ay~~r--g~~l~~lg~~~eAl~~~~kAL~l----~P---~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~---L~P~ 544 (721)
.+|..+ ..-+++.+++.+|.+.-+..+.- |- + ...|+....++...|+...--.-+.+-++ |.-+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 445543 33345568888888877766531 11 0 12233444567777775554444444333 3322
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (721)
..|+....+.+-.-.-+-..+++|+-+..-... .+.+- +-.-+.+.|.+|.+..-++++..|.
T Consensus 205 ---~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~------------pe~~s--nne~ARY~yY~GrIkaiqldYssA~ 267 (493)
T KOG2581|consen 205 ---EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY------------PEAAS--NNEWARYLYYLGRIKAIQLDYSSAL 267 (493)
T ss_pred ---chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC------------ccccc--cHHHHHHHHHHhhHHHhhcchhHHH
Confidence 234444444444444455566666421111111 11111 1134677888999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 004984 625 RSLQLARQHAASD 637 (721)
Q Consensus 625 ~~~~~Al~l~P~~ 637 (721)
+.+-+|++..|.+
T Consensus 268 ~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 268 EYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhCcch
Confidence 9999999999983
No 414
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=55.15 E-value=32 Score=35.54 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=58.4
Q ss_pred CccEE-EEEcCeEEEeehhh-hh-cCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH--H
Q 004984 181 LRNVV-FRIHEEKIECDRQK-FA-ALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP--N 253 (721)
Q Consensus 181 ~~DV~-l~v~~~~~~aHr~v-LA-a~S~yF~amF~~~~~--Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~--~ 253 (721)
+.|++ +-|||. ++.|+.. |. -.-....+||++... -+.....-|. =+-..|+-|++|+-|..+. ++. .
T Consensus 7 ~~~~v~lnvGG~-~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID---RDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 7 YPDVVELNVGGA-IYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID---RDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred cCCceeeccCCe-EEEeeccceeechHHHHHhhcCCCCCccccccccEEEc---CCcchHHHHHHHhcccccc-cchhhh
Confidence 45654 556665 4444432 22 222344566665221 1222445555 3457899999999996665 665 5
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHH
Q 004984 254 LLLEILIFANKFCCERLKDACDRK 277 (721)
Q Consensus 254 ~v~~LL~aAd~~~v~~L~~~C~~~ 277 (721)
++..|..-|++|+++.....+.+-
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhcc
Confidence 799999999999999888766554
No 415
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.25 E-value=2.9e+02 Score=29.14 Aligned_cols=200 Identities=14% Similarity=0.094 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhC-CCchhhhhhHHHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGF-KL---ALECLELRFC-FFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAAS 555 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l-~P---~~~~~~~R~~-~~~~lgd~eeAl~d~~kal~L~-P~~~~~~~~~~a~ 555 (721)
..++|.+.-+.+||++.+....++++. +| +.+--++... .....|..-.+.+-+..+-.-. ...... ....+.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~-~~~~~~ 82 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED-HVASIK 82 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchH-HHHHHH
Confidence 356788888899999999999999987 54 2443344433 4556677777777766532221 110000 001122
Q ss_pred HHHHHHHHhhhh-hhHHHHHHhhhhc--cccccccchHHHHHHHHHhCCCChhHHHHHHHHHH---HcCChHHHHHHHHH
Q 004984 556 QLHMLVREHIDN-WTIADCWLQLYDR--WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL---RLNCPEAAMRSLQL 629 (721)
Q Consensus 556 ~~~~~l~~~~~~-~~~A~~~~~l~~~--~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~---~lg~~eeAl~~~~~ 629 (721)
..+..+...+.. .+.. +.+.+. .....+.++-..|.++- +++|-.++.+.. +..-.+.|...|+.
T Consensus 83 ~yr~kie~EL~~iC~ei---l~lid~~Lip~~~~~eskVFy~KmK------GDYyRYlaE~~~~~e~~~~~~~a~~aY~~ 153 (244)
T smart00101 83 EYRGKIETELSKICDGI---LKLLESHLIPSASAAESKVFYLKMK------GDYHRYLAEFKTGAERKEAAENTLVAYKS 153 (244)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhCccccCcHHHHHHHHHHH------HHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 222222221111 1111 011110 00001111222222221 334444444321 11225578999998
Q ss_pred HHH-----hCCCChhHH---HHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCc---hhhHHHH
Q 004984 630 ARQ-----HAASDHERL---VYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC---SSTVVSL 697 (721)
Q Consensus 630 Al~-----l~P~~~ea~---~~~G~~Ly-~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 697 (721)
|++ +.|.++-.+ .|.+.-+| -+++.++|.....+|+. .|.+--|+ |+.++ |..++||
T Consensus 154 A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd----------~Ai~~ld~-l~ee~y~dstlImqL 222 (244)
T smart00101 154 AQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD----------EAIAELDT-LGEESYKDSTLIMQL 222 (244)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHhhc-cChhhhHHHHHHHHH
Confidence 886 557777542 12222233 35999999988887743 34444442 23333 7889999
Q ss_pred HHHhh
Q 004984 698 LEDAL 702 (721)
Q Consensus 698 ~~~~~ 702 (721)
|-|=|
T Consensus 223 LrDNL 227 (244)
T smart00101 223 LRDNL 227 (244)
T ss_pred HHHHH
Confidence 98755
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.22 E-value=2.1e+02 Score=32.33 Aligned_cols=136 Identities=13% Similarity=-0.050 Sum_probs=74.9
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHHhc----cc-hhhHhhH
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQR--LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----GH-IYSIAGL 421 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~--~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~~-~~A~~~l 421 (721)
.=..||...-.....++.+|=..+..--.+..+. ..++..+|.-|...|+++.|++.|-+|=.- +| ...+.++
T Consensus 114 ~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~ 193 (466)
T KOG0686|consen 114 LDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNL 193 (466)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHH
Confidence 3367886554322223333222222111222222 357788999999999999999999985322 22 2233444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~ 501 (721)
-+|-.-.|++..-....++|.+-- .+ .. +.+-+..| ..+..-|.+...+++|..|...
T Consensus 194 i~VSI~~~nw~hv~sy~~~A~st~--~~--~~---------------~~~q~v~~---kl~C~agLa~L~lkkyk~aa~~ 251 (466)
T KOG0686|consen 194 ILVSIYMGNWGHVLSYISKAESTP--DA--NE---------------NLAQEVPA---KLKCAAGLANLLLKKYKSAAKY 251 (466)
T ss_pred HHHHHhhcchhhhhhHHHHHHhCc--hh--hh---------------hHHHhcCc---chHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655555544321 00 00 11111222 2555667777788899999998
Q ss_pred HHHHH
Q 004984 502 INRIL 506 (721)
Q Consensus 502 ~~kAL 506 (721)
|-.+.
T Consensus 252 fL~~~ 256 (466)
T KOG0686|consen 252 FLLAE 256 (466)
T ss_pred HHhCC
Confidence 87665
No 417
>PF12854 PPR_1: PPR repeat
Probab=51.98 E-value=32 Score=24.34 Aligned_cols=30 Identities=3% Similarity=-0.149 Sum_probs=20.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 508 FKLALECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 508 l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+.|+...|...-..+.+.|+.++|++-|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356666666666667777777777776653
No 418
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.33 E-value=4.3e+02 Score=30.33 Aligned_cols=131 Identities=13% Similarity=-0.031 Sum_probs=70.3
Q ss_pred hccchHHHHHHHHH--HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh-hcCChhHHHHHHHHH
Q 004984 395 LRKEYDEAEHLFEA--AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS-LYCEGDKRWEDLDKA 471 (721)
Q Consensus 395 ~~g~y~eA~~~f~~--AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg-~~~~~~eAl~d~~kA 471 (721)
.+|+++++.+.... .+..=|..-....++-+.++|.++.|+...+ +...-++.+ ++|+.+.|++. |
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl~lg~L~~A~~~---a 341 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELALQLGNLDIALEI---A 341 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHH---C
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHHhcCCHHHHHHH---H
Confidence 45677776555441 1111122223445666788888888866532 222333332 12333555422 2
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
- ..++..-|..+|.+-+..|+++-|...|.|+= + +..+..+|.-.|+-+.=..--+.|.+-.-.+
T Consensus 342 ~--~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 342 K--ELDDPEKWKQLGDEALRQGNIELAEECYQKAK----D---FSGLLLLYSSTGDREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp C--CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH
T ss_pred H--hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C---ccccHHHHHHhCCHHHHHHHHHHHHHccCHH
Confidence 2 33477899999999999999999999999864 2 2344567788888766555555555444444
No 419
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.27 E-value=24 Score=38.29 Aligned_cols=81 Identities=6% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.+.|+-..-|+++..|...+.--.+.+-+.+--..|.+++...|.|++.+.+ ...=+..-++++-+-+.+.+++.++|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 5778888899999999998888888999999999999999999999999888 666778889999999999999999887
Q ss_pred HH
Q 004984 671 FE 672 (721)
Q Consensus 671 ~~ 672 (721)
..
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 65
No 420
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=49.81 E-value=5e+02 Score=30.63 Aligned_cols=153 Identities=16% Similarity=0.042 Sum_probs=83.7
Q ss_pred HHHHHHhccc-------hHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-----HHHHHHHHHHHHhc---CCCcHHHH
Q 004984 389 LGCVRLLRKE-------YDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-----KLWAYEKLNSVISS---VTPLGWMY 452 (721)
Q Consensus 389 lG~~~~~~g~-------y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~-----~~~A~~~~~~aI~~---~~~~~~ay 452 (721)
.+.++...|+ -++|...|+++|+- .......+.|.+-+..+. .+.--..+++++.. +|++.+.-
T Consensus 292 ~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~ 371 (656)
T KOG1914|consen 292 ISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQ 371 (656)
T ss_pred hhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhH
Confidence 3444445554 56677778887765 112222222222222221 22334445555543 44444332
Q ss_pred HHH-hhcCC-hhHHHHHHHHHHhcCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCH
Q 004984 453 QER-SLYCE-GDKRWEDLDKATALDPTLSYPYMYRASS-LMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDY 528 (721)
Q Consensus 453 ~~r-g~~~~-~~eAl~d~~kAieLdP~~~~ay~~rg~~-l~~lg~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~ 528 (721)
+.. -+--. ...|...|.||=+.--+..+.|..-|.+ |.-.++..-|...|.-.+.--++...+.+ -...+..+++-
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 222 11011 1556667888877666654444443332 34477888888888888877776443433 33467788888
Q ss_pred HHHHHHHHHHHhh
Q 004984 529 QAALCDVQAILTL 541 (721)
Q Consensus 529 eeAl~d~~kal~L 541 (721)
+.|...|+++++-
T Consensus 452 ~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 452 NNARALFERVLTS 464 (656)
T ss_pred hhHHHHHHHHHhc
Confidence 8888888888876
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.24 E-value=2.3e+02 Score=26.50 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=57.6
Q ss_pred hHHHHHHHhhhcCCC--CchhHHHHHHHHHHhh-hH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhh--
Q 004984 346 SLYCLLSEVAMNLDP--RSDKTVCFLERLLESA-ET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS-- 417 (721)
Q Consensus 346 ~~~~~l~wV~~d~~~--rs~~~~~LLe~Lv~~a-~~-~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A-- 417 (721)
+..-.++|+...... ....+.++||++.+.. .+ ..++=.-+..+=..+... ..++.+.|...... +...|
T Consensus 24 ~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~f 101 (126)
T PF08311_consen 24 PWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALF 101 (126)
T ss_dssp HHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHH
T ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHH
Confidence 455667888766554 4567788999977533 21 111112222222333332 23888888876554 55555
Q ss_pred HhhHHHHHHHhCCHHHHHHHHHHHH
Q 004984 418 IAGLARLGYIKGHKLWAYEKLNSVI 442 (721)
Q Consensus 418 ~~~lg~~~~~~G~~~~A~~~~~~aI 442 (721)
|..-|..+...|++.+|.+.|..+|
T Consensus 102 Y~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 102 YEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4456778899999999999888765
No 422
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.86 E-value=31 Score=29.61 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+++.+...++-....|+|++|+.+|..||+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455556666777778888888888887764
No 423
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.69 E-value=49 Score=37.89 Aligned_cols=65 Identities=14% Similarity=-0.113 Sum_probs=46.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+.|+++-.| + ..|-.+-.++|+.+.|.+..+. -+++..|..+|..-+..|+++-|..+|+++-..
T Consensus 312 e~AL~~~~D-~---~~rFeLAl~lg~L~~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 312 ELALQFVTD-P---DHRFELALQLGNLDIALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHSS--H---HHHHHHHHHCT-HHHHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHhhcCC-h---HHHhHHHHhcCCHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 455555444 2 3555666789999998875432 235788999999999999999999999987544
No 424
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.66 E-value=25 Score=42.63 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhhccCCCCC
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALADSSQDSS 689 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~-~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~-i~~~~~-a~~~~~~~~~~~~~~~~ 689 (721)
.+.+.+-++-|+...+. ..++|+ -++.+...|--||..|+|++|...|-++|. ++|++. -+| ||++
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 44555556655554322 222222 246778889999999999999999999998 599988 666 5555
Q ss_pred chhhHHHHHHH
Q 004984 690 CSSTVVSLLED 700 (721)
Q Consensus 690 ~~~~~~~~~~~ 700 (721)
.=......||.
T Consensus 412 ~IknLt~YLe~ 422 (933)
T KOG2114|consen 412 RIKNLTSYLEA 422 (933)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 425
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.55 E-value=36 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+.+..+...|+-....|+|++|+.+|.+||+.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555556666666777777777777776654
No 426
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=46.33 E-value=1.2e+02 Score=35.44 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHh--ccchHHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984 383 LLAFHQLGCVRLL--RKEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (721)
Q Consensus 383 ~la~~~lG~~~~~--~g~y~eA~~~f~~AL~~-------~~~~A~~~lg~~~~~~G~~~~A~~~~~~a 441 (721)
.+|+-+||.+..- ...-..++..|.+||.. .|.|.|.++|..+++.+++.+|++....|
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 4666666665432 23456678899999876 38889999999999999999999876654
No 427
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=46.24 E-value=1.5e+02 Score=30.11 Aligned_cols=173 Identities=16% Similarity=0.038 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHH-HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 494 NVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAALC-DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~eeAl~-d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
+-++-+.+|-+-|++.=.+.+++- |--.+..+|||-++|+ +|++|.++-..+-.-++..---...+.-...-.--+.+
T Consensus 8 q~e~~vkeyven~gvEyrfgCY~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~ 87 (248)
T KOG4014|consen 8 QEEAEVKEYVENIGVEYRFGCYEEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDA 87 (248)
T ss_pred HhHHHHHHHHHhcCceeeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCcc
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-------LNCPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~-------lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
+...|...+..+.+ .+.+.+..+.|+++.. .=+.+.|.+.+++|-.++ ++++-+++
T Consensus 88 -------------~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~L 150 (248)
T KOG4014|consen 88 -------------SLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLL 150 (248)
T ss_pred -------------CHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHH
Q ss_pred HHHHHhc------------------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 645 GWILYDT------------------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 645 G~~Ly~~------------------------G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
...+..- .+-+.|++..-+|.++.--.. |=--+-|.|+|
T Consensus 151 S~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGD 214 (248)
T KOG4014|consen 151 STMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGD 214 (248)
T ss_pred HHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccC
No 428
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.46 E-value=47 Score=33.10 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
..+..++-..+.+...|++..+...+.++...|+.++|.+..+++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3556667778888889999888888999999999999999999999999954
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.67 E-value=4e+02 Score=28.09 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHH----------------HHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINR----------------ILGFKLA-LECLELRFC-FFLALEDYQAALCDVQAI 538 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~k----------------AL~l~P~-~~~~~~R~~-~~~~lgd~eeAl~d~~ka 538 (721)
.++.-+...|..+.+.|++.+|...|=. .-+-.|. .+.+..|+. -|..+|+...|...++.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567777788888888888888764411 1122343 666667886 589999999999887766
Q ss_pred Hhh----CCCchh----hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984 539 LTL----SPDYRM----FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (721)
Q Consensus 539 l~L----~P~~~~----~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~ 610 (721)
.+. +|+... +.......+....+-...+.- .+..|..|.++ |...|+.||....+....
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~------------Y~~~L~rd~~~~~~L~~I 234 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEK------------YKPSLKRDPSFKEYLDKI 234 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHH------------THH---HHHHTHHHHHHH
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHH------------hCccccccHHHHHHHHHH
Confidence 665 675321 111112333333333333332 34455566655 566677788888888888
Q ss_pred HHHHHHcCCh
Q 004984 611 SLLLLRLNCP 620 (721)
Q Consensus 611 g~~L~~lg~~ 620 (721)
|..+..+..+
T Consensus 235 G~~yFgi~~~ 244 (260)
T PF04190_consen 235 GQLYFGIQPP 244 (260)
T ss_dssp HHHHH---S-
T ss_pred HHHHCCCCCC
Confidence 8888775544
No 430
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.59 E-value=1.1e+02 Score=35.17 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=36.7
Q ss_pred cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984 585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 585 dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (721)
+|++ +..+++|++--||++..++..++.+|.+||...|+-
T Consensus 466 GdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 466 GDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred ccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 7888 888999999999999999999999999999887654
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.59 E-value=62 Score=32.24 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
+...++.+...| ++..+.+.+.++..+|+.++|.+..+++..+-|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 335555555556 355566666666666666666666666666666
No 432
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=1.5e+02 Score=32.61 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=58.9
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~ 494 (721)
..|+...|--|.+.||.+.|.+++.+..+..- ++...=|-...-..+|..|++..=
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktv------------------------s~g~kiDVvf~~iRlglfy~D~~l 159 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTV------------------------SLGHKIDVVFYKIRLGLFYLDHDL 159 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh------------------------hcccchhhHHHHHHHHHhhccHHH
Confidence 45677788889999999999888764333211 111222334455667777777777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 495 VEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..+-|+-.+..++---+++ -|..+..-.|-|--|+++|..|..
T Consensus 160 V~~~iekak~liE~GgDWe---RrNRlKvY~Gly~msvR~Fk~Aa~ 202 (393)
T KOG0687|consen 160 VTESIEKAKSLIEEGGDWE---RRNRLKVYQGLYCMSVRNFKEAAD 202 (393)
T ss_pred HHHHHHHHHHHHHhCCChh---hhhhHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777776544433 222233334445555555555544
No 433
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.99 E-value=34 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+++.+...|......|+|++|+.+|..||+.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3444555556666677777777777777664
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.59 E-value=1.3e+02 Score=33.79 Aligned_cols=121 Identities=16% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--HHHHHhh------cCChhHHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004984 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGW--MYQERSL------YCEGDKRWEDLDKATALDP---TLSYPYMYRASSL 489 (721)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~--ay~~rg~------~~~~~eAl~d~~kAieLdP---~~~~ay~~rg~~l 489 (721)
.++-.++.++|..|.+.++..+..-|.... .|..... ..+.++|++.+++.+..+- .....+.....+.
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 445567889999999999888875333222 2222211 2455888888888776522 1223333333333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 490 MTKQNVEAALAEINRILGFKLAL---ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 490 ~~lg~~~eAl~~~~kAL~l~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
..+..+..+........+ +|.+ ..++..+.=....|+|+.|+.-+=|++|+=
T Consensus 217 ~~~~~~~~~~~~~~~~~~-~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 217 KALESILSALEDKKQRQK-KLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHhhccchhhhhcccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 333333322222222110 0111 111222222457899999999999998873
No 435
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.29 E-value=1.3e+02 Score=36.55 Aligned_cols=200 Identities=12% Similarity=0.003 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCC-cHHHH
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLAR-LGYIKGHKLWAYEKLNSVISSVTP-LGWMY 452 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~A~~~lg~-~~~~~G~~~~A~~~~~~aI~~~~~-~~~ay 452 (721)
...+++-+.|....+|+.-++..+..=++. +...++-.|. -..+-||.+.|+...-.+++...+ .+.+|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~ 281 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMY 281 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCcee
Confidence 344566667777777776666665432221 1111111111 123456666666666666665433 23444
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl 532 (721)
.-.|++++ +.- .+.-|.+.+..+.|+.-|+||.+..|......|.+.++...|..=+--
T Consensus 282 Cl~GRIYK--------DmF-------------~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 282 CLCGRIYK--------DMF-------------IASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred eeechhhh--------hhh-------------hccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccch
Confidence 44443300 000 111122234455677777777777776555556665555544321111
Q ss_pred HHHHH-HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 004984 533 CDVQA-ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (721)
Q Consensus 533 ~d~~k-al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g 611 (721)
...++ ..+| .......|.++...+.|+-|-. ++.
T Consensus 341 ~Elq~IgmkL----------n~LlgrKG~leklq~YWdV~~y----~~a------------------------------- 375 (1226)
T KOG4279|consen 341 LELQQIGMKL----------NSLLGRKGALEKLQEYWDVATY----FEA------------------------------- 375 (1226)
T ss_pred HHHHHHHHHH----------HHHhhccchHHHHHHHHhHHHh----hhh-------------------------------
Confidence 11111 1111 1133344556666677777621 111
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~ 651 (721)
-...|++..|+.....-..++|-.-+.--..+.+++..
T Consensus 376 --sVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l~~ 413 (1226)
T KOG4279|consen 376 --SVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILLIN 413 (1226)
T ss_pred --hhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHHHH
Confidence 11235566666666666666666665555556555543
No 436
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.19 E-value=45 Score=38.88 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 462 DKRWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 462 ~eAl~d~~kAieL-----dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
..+++-|.+||.- +-.+.++|.++|..+++.++|.||+..+-.|-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 4556667777664 45568999999999999999999998887764
No 437
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=43.01 E-value=45 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
.+..+...|+.....|++++|+.+|.+|++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666543
No 438
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.92 E-value=94 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH
Q 004984 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (721)
Q Consensus 399 y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI 442 (721)
++.|+..+.+|++. ...|++.+|+..|.++|
T Consensus 3 ~~~A~~l~~~Av~~-------------D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 3 LQKAIELVKKAIEE-------------DNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH
Confidence 35566666666553 44577777777764433
No 439
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=41.91 E-value=1.5e+02 Score=35.42 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=34.4
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
.+++.||.+..++-=++-| +.|+-.|.-|...++|+||-+.|.||-+
T Consensus 786 ~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 4556666666555444444 4778889999999999999999988754
No 440
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.74 E-value=48 Score=39.99 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~ 457 (721)
.+....+--|+++++.++|.+|---|..++.+-| ...-+...+ + .+.+.+-.
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~----------------~---------~s~~m~~~ 105 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSN----------------Q---------ASCYMQLG 105 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHH----------------H---------HHHHhhcC
Confidence 3456667789999999999999888888888732 211111100 0 01111112
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL 512 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~ 512 (721)
.+++.+++.+-+-|+...|....+...|+-.|-.+++++-|+.+..-.....|+.
T Consensus 106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 106 LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2344777878888999999999999999999999999999999988888888863
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.71 E-value=1.2e+02 Score=33.93 Aligned_cols=148 Identities=10% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l 599 (721)
..+...++|..|.+-|+.++...++.. ..++++...-....|..|...+-.+|...++..+.-
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~-----------------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~ 200 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAV-----------------NHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPE 200 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChh-----------------hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccch
Confidence 356777888888888888888765421 012222222333556666666666666666653221
Q ss_pred CCCChhHHHHHH-HHHHHcCChHHHHHHHH--HHHHhCCCChhH------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 600 DAPKGVLYFRQS-LLLLRLNCPEAAMRSLQ--LARQHAASDHER------LVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 600 ~P~~~~~~~~~g-~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea------~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.....+.++... ..+.+.. +-.+...+ ++.......... +++=+..-..+|+|+.|+...=|++++-
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~-- 276 (380)
T TIGR02710 201 RLALYQVTSHDELEDVIKRN--ASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELI-- 276 (380)
T ss_pred hhhhhhhhhhhHHHHHHHhH--HhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--
Confidence 112222222211 0011111 10111111 111111111111 1122334457899999999999998873
Q ss_pred HHHHHH-H--HHHhhccCCCCC
Q 004984 671 FEAFFL-K--AYALADSSQDSS 689 (721)
Q Consensus 671 ~~a~~~-~--~~~~~~~~~~~~ 689 (721)
..+.+ . ++-+-+++++|+
T Consensus 277 -~q~~l~~~~~~~l~~~~~~~~ 297 (380)
T TIGR02710 277 -VQIRLEERGKYGLDTDSINPD 297 (380)
T ss_pred -HHHHHHHccCCCCCCCcCChh
Confidence 23333 2 455555665554
No 442
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.17 E-value=6.6e+02 Score=29.55 Aligned_cols=197 Identities=15% Similarity=0.056 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~-~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~ 459 (721)
...++++.++.++.+. .-++=-..+++.++....++..++-. .++.+++...+...|.+|+...-+.-
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~---------- 165 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRR---------- 165 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchh----------
Confidence 3467888899999887 55556667888888877777665433 45667999999999998886532110
Q ss_pred ChhHH-HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKR-WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eA-l~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
...| .+..+|.+++=|++.+-...+- .++++-+...-..-.+.....-|....++.+|++-..-+
T Consensus 166 -q~~~i~evWeKL~~~i~dD~D~fl~l~-------------~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 166 -QNAAIKEVWEKLPELIGDDKDFFLRLQ-------------KKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred -hhhhHHHHHHHHHHhccccHHHHHHHH-------------HHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 0112 2345667776666655433211 111111111110111112223466777888888888888
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cccchHHHHHHHHHhCCCChhHH
Q 004984 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DDIGSLSVIYQMLESDAPKGVLY 607 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-dd~~al~~~~qaL~l~P~~~~~~ 607 (721)
++.|..+.- +-......++..-+.+.+-+-+....+.-..- +.+.++..|+.-+-.+-+|-.+|
T Consensus 232 l~~d~k~~~-----ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 232 LEHDEKDVW-----ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hhhcchhhh-----HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEe
Confidence 888887732 22233333333222222222222333222222 22225667777777777765554
No 443
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.84 E-value=44 Score=28.61 Aligned_cols=32 Identities=19% Similarity=0.024 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 004984 400 DEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 400 ~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (721)
..|+....+|++. -..|++.+|+..|.++|+.
T Consensus 4 ~~a~~l~~~Ave~-------------D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVEL-------------DQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH
Confidence 4566677777664 4557888888888777764
No 444
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.54 E-value=44 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 380 lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+.++..+...++-....|+|++|..+|..+|+.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334445555555556667777777777776654
No 445
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.31 E-value=32 Score=29.37 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHh
Q 004984 652 SHCEEGLRKAEESIQ 666 (721)
Q Consensus 652 G~~deAl~~ye~Ai~ 666 (721)
|+|++|+..|.++|.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 566666666665554
No 446
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.04 E-value=82 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
.++|.+|+++|+.+.|...++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345556666666666666666666
No 447
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.47 E-value=57 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
.++.+...|+.....|+|++|+.+|..|++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566666677777777777777654
No 448
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.39 E-value=1.7e+02 Score=24.47 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (721)
Q Consensus 399 y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~ 440 (721)
+++|+....+|++. -..|++++|+..|.+
T Consensus 5 ~~~A~~li~~Av~~-------------d~~g~~~eAl~~Y~~ 33 (77)
T smart00745 5 LSKAKELISKALKA-------------DEAGDYEEALELYKK 33 (77)
T ss_pred HHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHH
Confidence 45566665565543 335777777776643
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.25 E-value=6e+02 Score=28.20 Aligned_cols=58 Identities=22% Similarity=0.179 Sum_probs=36.2
Q ss_pred hHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 479 SYPYMY--RASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 479 ~~ay~~--rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
...|.+ +|.+-.++|+..||+..++...+--|- ...+.|+--++.+++ |-+|++.++.
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q----AYADvqavLa 335 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ----AYADVQAVLA 335 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344444 577778899999999999888766563 223344444455543 4455555554
No 450
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.08 E-value=49 Score=28.34 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 004984 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 399 y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (721)
+++|+....+|++.+ ..|++++|+..|..+|+.
T Consensus 3 l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
Confidence 567777777776653 348888888888888775
No 451
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.01 E-value=7.3e+02 Score=29.17 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=58.7
Q ss_pred CCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc------CC--CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCC
Q 004984 475 DPTLSYP-YMYRASSLMTKQNVEAALAEINRILGF------KL--ALECLELRFCFFLALED-YQAALCDVQAILTLSPD 544 (721)
Q Consensus 475 dP~~~~a-y~~rg~~l~~lg~~~eAl~~~~kAL~l------~P--~~~~~~~R~~~~~~lgd-~eeAl~d~~kal~L~P~ 544 (721)
|+++.-. |.-.|.++..+|+...|-..|+.+++- +| -|.++|-+|.++..+|. ..+|.....+|-+-..+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 5554433 445899999999999999999999832 33 26677889999999999 99999999999999988
Q ss_pred ch
Q 004984 545 YR 546 (721)
Q Consensus 545 ~~ 546 (721)
|.
T Consensus 524 Y~ 525 (546)
T KOG3783|consen 524 YE 525 (546)
T ss_pred cc
Confidence 73
No 452
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.92 E-value=1e+03 Score=30.79 Aligned_cols=157 Identities=21% Similarity=0.103 Sum_probs=78.3
Q ss_pred HHHHHhcCCCChHHHHH----HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984 468 LDKATALDPTLSYPYMY----RASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~----rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P 543 (721)
|..|+.|--.+.+.|.. -|.-+++.+++++|.-.|.+.=++.- --.++...|||.+|+.--.+ +.+
T Consensus 924 y~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gklek-------Al~a~~~~~dWr~~l~~a~q---l~~ 993 (1265)
T KOG1920|consen 924 YDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEK-------ALKAYKECGDWREALSLAAQ---LSE 993 (1265)
T ss_pred chhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHH-------HHHHHHHhccHHHHHHHHHh---hcC
Confidence 45555555555544444 44555666666666666555432211 11244555666666553222 222
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
.-. .....|..+.+.+.+..+-.+.|.. +-+. +....+|.. +|.+-..+++|
T Consensus 994 ~~d--e~~~~a~~L~s~L~e~~kh~eAa~i---l~e~---------~sd~~~av~--------------ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 994 GKD--ELVILAEELVSRLVEQRKHYEAAKI---LLEY---------LSDPEEAVA--------------LLCKAKEWEEA 1045 (1265)
T ss_pred CHH--HHHHHHHHHHHHHHHcccchhHHHH---HHHH---------hcCHHHHHH--------------HHhhHhHHHHH
Confidence 211 1123345666666666666666642 1111 112233322 34556677778
Q ss_pred HHHHHHHH-------HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 624 MRSLQLAR-------QHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 624 l~~~~~Al-------~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
++....+- .+.|. +.-.-|.++..+.+.-+-+..|.+=+
T Consensus 1046 lrva~~~~~~d~iee~l~~a---l~e~~~~~~~~L~~~k~~f~~yk~RL 1091 (1265)
T KOG1920|consen 1046 LRVASKAKRDDIIEEVLKPA---LLEAFGEVLEFLEDVKEQFVKYKKRL 1091 (1265)
T ss_pred HHHHHhcccchHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665 33333 34445666666666555555565444
No 453
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.61 E-value=5.6e+02 Score=27.68 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHhhcCChhHHHHHHHHHHhcC---------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H
Q 004984 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALD---------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L 512 (721)
Q Consensus 445 ~~~~~~ay~~rg~~~~~~eAl~d~~kAieLd---------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~ 512 (721)
+..+|..|+.+|.|.+.++-+..+.+.-.-+ ....+.|.---.+|-++++...--..|.+||.++.. |
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 4457888888887755555444443332221 112345555556777888877777888999988743 3
Q ss_pred HHH-HHHH---HHHHhcCCHHHHHHHHHHHHh
Q 004984 513 ECL-ELRF---CFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 513 ~~~-~~R~---~~~~~lgd~eeAl~d~~kal~ 540 (721)
-.. ..|- -.+.+-|++++|-.||=.|.+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 322 3343 468899999999999988876
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.20 E-value=1.1e+02 Score=33.92 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~ 650 (721)
|+.+++.++..+|.|..+...+-.++..+|..+.|+..|+. +.+. .--+.++|...+.
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~-L~iK---~IQ~DTL~h~~~~ 259 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES-LDIK---NIQLDTLGHLILD 259 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh-cChH---HHHHHHhHHHHHH
Confidence 68899999999999999999999999999999999999853 3332 1133445555444
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.37 E-value=63 Score=36.51 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFK--------LA--LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--------P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+...+.-++.-+|+|..|+..++-+ .++ |. ...++..|.+|+.++||.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888899999999876532 222 21 12357789999999999999999999886
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.91 E-value=1.4e+02 Score=36.19 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=65.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC
Q 004984 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (721)
Q Consensus 523 ~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~ 602 (721)
...+-.+.|+.+|++|.+..|.-.. .-++..++...-+.++...=+-+++
T Consensus 298 tDa~s~~~a~~WyrkaFeveP~~~s------GIN~atLL~aaG~~Fens~Elq~Ig------------------------ 347 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFEVEPLEYS------GINLATLLRAAGEHFENSLELQQIG------------------------ 347 (1226)
T ss_pred cchhhHHHHHHHHHHHhccCchhhc------cccHHHHHHHhhhhccchHHHHHHH------------------------
Confidence 3456678899999999999998522 2223333344444444442111111
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 679 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~ 679 (721)
..++.+|.+.|+.+.-+...+-| .+.|.- --..++.+|++..|+-.+++|. +||||-.
T Consensus 348 -----mkLn~LlgrKG~leklq~YWdV~-----------~y~~as-VLAnd~~kaiqAae~mfKLk~P--~WYLkS~ 405 (1226)
T KOG4279|consen 348 -----MKLNSLLGRKGALEKLQEYWDVA-----------TYFEAS-VLANDYQKAIQAAEMMFKLKPP--VWYLKST 405 (1226)
T ss_pred -----HHHHHHhhccchHHHHHHHHhHH-----------Hhhhhh-hhccCHHHHHHHHHHHhccCCc--eehHHHH
Confidence 23566778888887544443322 222221 1246899999999999999885 6777753
No 457
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.27 E-value=2.2e+02 Score=34.07 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
....+++..|..+.+.+.|++.+..|-+.+|. +-+-..-..+...-|.-++|+....+...
T Consensus 395 K~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 395 KIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 34455666666666677777777777666664 33323333344455666666666665554
No 458
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=34.59 E-value=7.2e+02 Score=28.06 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 004984 652 SHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 652 G~~deAl~~ye~Ai~i~~ 669 (721)
.|+.+|+...|+|+++..
T Consensus 299 ahl~~a~~~~eea~r~~~ 316 (384)
T cd09248 299 AHLKRAILGQEEALRLHA 316 (384)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 577888888888888764
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=1.6e+02 Score=33.21 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 004984 378 TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL 448 (721)
Q Consensus 378 ~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~ 448 (721)
+...+++-.+.+=..++.-+.|+.|.....++.-. ..+..++++|++...+++|..|.+.+-.|+...|..
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34444454555556667778888888877765432 123456788999999999999999999999988853
No 460
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=33.97 E-value=7.3e+02 Score=27.99 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 004984 485 RASSLMTKQNVEAALAEINRILG 507 (721)
Q Consensus 485 rg~~l~~lg~~~eAl~~~~kAL~ 507 (721)
+|.....+|+|+-|...|+-+..
T Consensus 214 LAD~aFml~Dy~~A~s~Y~~~k~ 236 (414)
T PF12739_consen 214 LADLAFMLRDYELAYSTYRLLKK 236 (414)
T ss_pred HHHHHHHHccHHHHHHHHHHHHH
Confidence 56666667777777777766664
No 461
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.49 E-value=80 Score=24.13 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.++.+|+++|+.+.|-...++.++ +.+|+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 4567777777777777777777774 45544
No 462
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.20 E-value=77 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+++.+...|+-....|+|++|..+|..||+.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666553
No 463
>PF13041 PPR_2: PPR repeat family
Probab=33.11 E-value=1.7e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.006 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCHHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECL 515 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--~P~~~~~ 515 (721)
...|+.+=..+.+.|++++|+..|++..+. .|+...+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 345666667777777888888877777764 4444333
No 464
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.97 E-value=77 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
.++|.-....|++++|+..|+.|++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555666666655555544
No 465
>PF12854 PPR_1: PPR repeat
Probab=31.89 E-value=83 Score=22.17 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 478 LSYPYMYRASSLMTKQNVEAALAEINR 504 (721)
Q Consensus 478 ~~~ay~~rg~~l~~lg~~~eAl~~~~k 504 (721)
+...|..+-..|.+.|+.++|+..|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356888899999999999999998875
No 466
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.94 E-value=2.9e+02 Score=32.84 Aligned_cols=66 Identities=11% Similarity=-0.105 Sum_probs=40.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
++|+++.|+.. .|-.+..++|+++.|.....++= +...|..+|.+-...|++..|.++|.+|-.+.
T Consensus 631 e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 631 EQALELSTDPD----QRFELALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred HhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 55666665543 35556667777777655433321 24456667777777777778877777776544
No 467
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.89 E-value=69 Score=27.73 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=10.3
Q ss_pred HHcCChHHHHHHHHHHHHh
Q 004984 615 LRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l 633 (721)
...|..++|+..|++++++
T Consensus 19 dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 19 DEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hhcCCHHHHHHHHHHHHHH
Confidence 3445556666665555543
No 468
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.75 E-value=1.3e+03 Score=29.92 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=75.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHH--------HhCCHH----HHHHHHHHHHhcCCCcHHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGY--------IKGHKL----WAYEKLNSVISSVTPLGWMYQ 453 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~--------~~G~~~----~A~~~~~~aI~~~~~~~~ay~ 453 (721)
+.+|.++...|+..+|+.+|.+|..- +...++..+ ++. ..|+.- .|...|.+++++.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l--v~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll-------- 993 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL--VYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL-------- 993 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHH--HHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH--------
Confidence 56788888889999999999998765 444444332 333 445432 2455666666542
Q ss_pred HHhhcCChhHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhc
Q 004984 454 ERSLYCEGDKRWEDLDKATAL----DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLAL 525 (721)
Q Consensus 454 ~rg~~~~~~eAl~d~~kAieL----dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~----~~~~~R~~~~~~l 525 (721)
-.++..++++.--.+||+- +|+-+-.+.+.-+-+.++|.+-+|... |--+|+. +++.-.-.++.+-
T Consensus 994 --e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 994 --EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred --HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhc
Confidence 1233446666666666664 333456667777778888888887654 3347763 2232222345555
Q ss_pred CCHH
Q 004984 526 EDYQ 529 (721)
Q Consensus 526 gd~e 529 (721)
|.++
T Consensus 1068 g~l~ 1071 (1480)
T KOG4521|consen 1068 GELE 1071 (1480)
T ss_pred cchH
Confidence 5543
No 469
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=30.71 E-value=1e+02 Score=21.12 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHh
Q 004984 466 EDLDKATALDPTLSYPYMYRASSLMT 491 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~~l~~ 491 (721)
+.-.++|..+|.+..+|.+|--++..
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHHHH
Confidence 34456777777777777776655543
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.75 E-value=3.1e+02 Score=28.59 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhHhhHHHHHHHhCCH
Q 004984 363 DKTVCFLERLLESAETDRQRL---LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSIAGLARLGYIKGHK 431 (721)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~---la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~A~~~lg~~~~~~G~~ 431 (721)
....++|+.+........+.. .....+|..++..|+|++|.+.|+.+...-. ......+..+....|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 355677777665443322222 2225788889999999999999998854411 22233455677778877
Q ss_pred HHHHHH
Q 004984 432 LWAYEK 437 (721)
Q Consensus 432 ~~A~~~ 437 (721)
+..+..
T Consensus 235 ~~~l~~ 240 (247)
T PF11817_consen 235 EDYLTT 240 (247)
T ss_pred HHHHHH
Confidence 766554
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.63 E-value=6.6e+02 Score=26.11 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=23.0
Q ss_pred hCCCChhH---HHHHHHHH-HHcCChHHHHHHHHHHHHhC
Q 004984 599 SDAPKGVL---YFRQSLLL-LRLNCPEAAMRSLQLARQHA 634 (721)
Q Consensus 599 l~P~~~~~---~~~~g~~L-~~lg~~eeAl~~~~~Al~l~ 634 (721)
+.|.+|.- ..|.+..+ ..+|.+++|+...++|+.-.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45666542 33444444 44999999999999887654
No 472
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.62 E-value=1.2e+02 Score=19.74 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHhCCCChh
Q 004984 620 PEAAMRSLQLARQHAASDHE 639 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~e 639 (721)
++.|...|++++...|.+.+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 3 IERARKIYERALEKFPKSVE 22 (33)
T ss_pred HHHHHHHHHHHHHHCCCChH
Confidence 34444444444444444433
No 473
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.24 E-value=9.5e+02 Score=27.86 Aligned_cols=220 Identities=10% Similarity=0.050 Sum_probs=138.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHh-----
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC-DVQAILT----- 540 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~-d~~kal~----- 540 (721)
.|++++.--|-.++.|+.-..-+..-++-+.|+....++++..|+ +..+-.-+.++.+-++|+. +|++.+.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 488899999999999999999999999999999999999988886 2222222233333333332 3333322
Q ss_pred ---hC----------CCchh--hhh-----------hHHHHHHHHHHHHhhhhhhHHHHHH---------hhhhcccccc
Q 004984 541 ---LS----------PDYRM--FEG-----------RVAASQLHMLVREHIDNWTIADCWL---------QLYDRWSSVD 585 (721)
Q Consensus 541 ---L~----------P~~~~--~~~-----------~~~a~~~~~~l~~~~~~~~~A~~~~---------~l~~~~~~~d 585 (721)
++ |.+.. -.- .+.+......+..+..-+.++.-.- ..+-......
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 11 11100 000 1111122222333333333331000 0000011113
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--CCHHHHHHHHH
Q 004984 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT--SHCEEGLRKAE 662 (721)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~--G~~deAl~~ye 662 (721)
|.. |-.+++-.+.-.|+++.+-+..=.-|.++|+-+.|...++.+++.-.+..---.+--|+-|.. |+.-.+.+.=+
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 443 666899999999999988888888899999999999999988876555544556677777765 89988887777
Q ss_pred HHHhcCC--CHHHHHHHHHHhhccCCCCC
Q 004984 663 ESIQMKR--SFEAFFLKAYALADSSQDSS 689 (721)
Q Consensus 663 ~Ai~i~~--~~~a~~~~~~~~~~~~~~~~ 689 (721)
+--.+-| |..+-|+--|++-|+.+-|.
T Consensus 527 rf~e~~pQen~~evF~Sry~ik~da~~~~ 555 (660)
T COG5107 527 RFRELVPQENLIEVFTSRYAIKADAILPP 555 (660)
T ss_pred HHHHHcCcHhHHHHHHHHHhhhccccCCC
Confidence 7777754 44588888888887776554
No 474
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.96 E-value=1.1e+02 Score=32.65 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHH-------HHhcCCHHHHHHHHHHHHhc-------CCCHH-HHHHHHHHh
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWI-------LYDTSHCEEGLRKAEESIQM-------KRSFE-AFFLKAYAL 681 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-------Ly~~G~~deAl~~ye~Ai~i-------~~~~~-a~~~~~~~~ 681 (721)
+..-..-...|.+|+.+.+.-+.-+ -.|.+ ....|+|++|-..|=+|.+- .|..- -|...|-.|
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML 282 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML 282 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence 4444555667888888876644322 23443 56778899988888777753 11111 567777778
Q ss_pred hccCCCCCchh
Q 004984 682 ADSSQDSSCSS 692 (721)
Q Consensus 682 ~~~~~~~~~~~ 692 (721)
.-|.++|--|.
T Consensus 283 mkS~iNPFDsQ 293 (440)
T KOG1464|consen 283 MKSGINPFDSQ 293 (440)
T ss_pred HHcCCCCCccc
Confidence 88888886663
No 475
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.69 E-value=1.1e+02 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHHHHhc
Q 004984 639 ERLVYEGWILYDT----SHCEEGLRKAEESIQM 667 (721)
Q Consensus 639 ea~~~~G~~Ly~~----G~~deAl~~ye~Ai~i 667 (721)
++.+++|.+++.- .+.++|+..|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 5667777776542 2778888888877654
No 476
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.46 E-value=74 Score=27.29 Aligned_cols=26 Identities=15% Similarity=-0.124 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
..+|.-+.+.|++++|+..|..|++.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444455666666666666666654
No 477
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=9.6e+02 Score=27.67 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=34.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccc-------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAGH-------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER 455 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~-------~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r 455 (721)
.......+.|++++|-+.+.--++.++ ..|+..+-..-....+..+|+..+.-+.+.+-+.-..+-+|
T Consensus 527 ~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~R 601 (625)
T KOG4422|consen 527 CIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQR 601 (625)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 344445566777777777666554422 11222333334445566666666665555444333333333
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.35 E-value=3.8e+02 Score=25.26 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=52.0
Q ss_pred hhHHHHHHHhhhcCC--CCchhHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhh-
Q 004984 345 FSLYCLLSEVAMNLD--PRSDKTVCFLERLLESAETDRQRL--LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS- 417 (721)
Q Consensus 345 ~~~~~~l~wV~~d~~--~rs~~~~~LLe~Lv~~a~~~lq~~--la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A- 417 (721)
.+..-.++|+..... .+......+||++++-..+.-+-. .-+-.+=..+. +..+++...|...... |...|
T Consensus 23 ~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya--~~~~dp~~if~~L~~~~IG~~~Al 100 (125)
T smart00777 23 DLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYA--DNCDEPRELFQFLYSKGIGTKLAL 100 (125)
T ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH--HhcCCHHHHHHHHHHCCcchhhHH
Confidence 455677889875544 235577888988775432211100 01111111111 1234566677765444 44444
Q ss_pred -HhhHHHHHHHhCCHHHHHHHHH
Q 004984 418 -IAGLARLGYIKGHKLWAYEKLN 439 (721)
Q Consensus 418 -~~~lg~~~~~~G~~~~A~~~~~ 439 (721)
|...|..+...|++.+|.+.|+
T Consensus 101 fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456778899999999988775
No 479
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.27 E-value=4.2e+02 Score=25.42 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 511 ~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
..+....++.-....||+.-|..-.+.++..+|++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n 103 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDN 103 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc
Confidence 34444445555556667777777777777777766
No 480
>PF15469 Sec5: Exocyst complex component Sec5
Probab=26.05 E-value=2.3e+02 Score=27.91 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 522 FLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 522 ~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
+...|+|+.|+.+|.+|-.+--++
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHh
Confidence 577899999999999888875443
No 481
>PF13041 PPR_2: PPR repeat family
Probab=25.89 E-value=2.2e+02 Score=21.35 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCc
Q 004984 510 LALECLELRFCFFLALEDYQAALCDVQAILT--LSPDY 545 (721)
Q Consensus 510 P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~--L~P~~ 545 (721)
|+.-.|...-..+.+.|++++|.+-|++-.+ +.|+-
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 5555566666788999999999999999988 55774
No 482
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.39 E-value=1.2e+02 Score=21.27 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=17.3
Q ss_pred hhHHHHHH--HHHHhcC-----CHHHHHHHHHHHHhc
Q 004984 638 HERLVYEG--WILYDTS-----HCEEGLRKAEESIQM 667 (721)
Q Consensus 638 ~ea~~~~G--~~Ly~~G-----~~deAl~~ye~Ai~i 667 (721)
++|.+.+| .+++.-. +.++|+..|++|-+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35667777 3333322 357777777777653
No 483
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=25.09 E-value=1.8e+02 Score=28.04 Aligned_cols=53 Identities=11% Similarity=-0.093 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 656 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~de 656 (721)
++.-..++......|++.-|....+.++..+|+|.++..-+..+|-.+|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34445556666777888888888888888888888888777777776665433
No 484
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.02 E-value=1.1e+03 Score=29.87 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=60.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCHH--HHHHHHHHhh
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWILYDTSHCEEGLRKAEESIQM--KRSFE--AFFLKAYALA 682 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~Ly~~G~~deAl~~ye~Ai~i--~~~~~--a~~~~~~~~~ 682 (721)
.+..-|-+.+|+++|++|+..-+..++.+ +..|- -|-+-.-|.|-..+++.+.. ..|.. ..|||=|.-.
T Consensus 325 r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~ 403 (960)
T KOG1938|consen 325 RFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSNK 403 (960)
T ss_pred hcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHHH
Confidence 44455778999999999999988755432 22222 23333367777777887764 44444 7888888887
Q ss_pred ccCCCCCc-----------hhhHHHHHHHhhcCCCCcc
Q 004984 683 DSSQDSSC-----------SSTVVSLLEDALKCPSDRL 709 (721)
Q Consensus 683 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 709 (721)
++-.=+.+ +..=+..++..=.||+|+.
T Consensus 404 ~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e 441 (960)
T KOG1938|consen 404 DSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAE 441 (960)
T ss_pred hhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchh
Confidence 76554433 2333444555667777764
No 485
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.90 E-value=8.9e+02 Score=28.47 Aligned_cols=204 Identities=13% Similarity=0.053 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhcCCCCh--HH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HH-------HHHH-HHHHhcCCH
Q 004984 462 DKRWEDLDKATALDPTLS--YP-YMYRASSLMTKQNVEAALAEINRILGFKLALE--CL-------ELRF-CFFLALEDY 528 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~--~a-y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~--~~-------~~R~-~~~~~lgd~ 528 (721)
+++...+....+++|..+ .. =-.+......+-+.++||...+.-+.+++... .. |.-. .+.....|.
T Consensus 277 ~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~ 356 (593)
T KOG2460|consen 277 EKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRN 356 (593)
T ss_pred HHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHH
Confidence 455555666777776332 22 23355556666678888888888887776422 11 1111 234455666
Q ss_pred HHHHHH-HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC--hh
Q 004984 529 QAALCD-VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GV 605 (721)
Q Consensus 529 eeAl~d-~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~--~~ 605 (721)
+.|+.. ++..+..+|++.- +..-..+..+.+...+...++. ++--. .+|.+ +.+.+++.--. +-
T Consensus 357 ~~~~~n~~~~~ls~~~~~~~---k~rpqdl~RLYd~iiknl~e~~---elPG~---~~D~~----l~sqle~~~~~fkaf 423 (593)
T KOG2460|consen 357 EDAFTNLWNQWLSQQTSDPK---KLRPQDLERLYDSIIKNLSEIM---ELPGL---ESDKE----LQSQLELKKLYFKAF 423 (593)
T ss_pred HHHHhhhHHHHHHhCccccc---ccCHHHHHHHHHHHHHHHHHHH---hCCCc---ccchH----HHHHHHHHHHHHHHH
Confidence 555544 5555666655321 1112222233333334444331 11111 01221 22222222111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhhc
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALAD 683 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~--a~~~~~~~~~~ 683 (721)
-.|..|..+..++++.||++.|.+|.. +.-.++-..+.+++-+.. .-+.++-|... -+.++++++.-
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~s----------ylqe~~~~l~s~~e~l~~-~~~~eli~el~k~k~s~~a~~il~ 492 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYS----------YLQEVNSELESFKESLLP-LLLLELISELQKRKESLGAAVILL 492 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhhchhhcccc-hHHHHHHHHHHHHHHhhhhhhhhh
Confidence 267888899999999999999988754 445566667777777754 55556666665 67788887776
Q ss_pred cCCCCC
Q 004984 684 SSQDSS 689 (721)
Q Consensus 684 ~~~~~~ 689 (721)
.+.+..
T Consensus 493 a~~a~~ 498 (593)
T KOG2460|consen 493 AEYAKR 498 (593)
T ss_pred hccchh
Confidence 665544
No 486
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.88 E-value=3e+02 Score=25.37 Aligned_cols=73 Identities=7% Similarity=0.080 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCC--------CHHHHHHHHHHHHhcCCHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN-RILGFKL--------ALECLELRFCFFLALEDYQAAL 532 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~-kAL~l~P--------~~~~~~~R~~~~~~lgd~eeAl 532 (721)
...+..++..+.-+|.++..+..+..+|.+. +.++.+..++ ..-.+++ ....+.....++.+.|++++|+
T Consensus 24 ~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al 102 (140)
T smart00299 24 EELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAI 102 (140)
T ss_pred HHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHH
Confidence 5666666666666666666666666666644 3344454444 2111111 1111222334566666666666
Q ss_pred HHH
Q 004984 533 CDV 535 (721)
Q Consensus 533 ~d~ 535 (721)
.-+
T Consensus 103 ~~~ 105 (140)
T smart00299 103 VTL 105 (140)
T ss_pred HHH
Confidence 543
No 487
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=24.59 E-value=1.3e+02 Score=32.61 Aligned_cols=52 Identities=21% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
.|.+-|.+ .+|+..-.+++.+||=+...|.-+-.+|+.+|+--+|+..|+|-
T Consensus 288 ~yle~g~~---neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 288 AYLEAGKP---NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHcCCh---HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444 78888888999999999999999999999999988888877764
No 488
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=24.40 E-value=1.7e+02 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHH
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
....+|..+|.+-.+|..|-.++.
T Consensus 5 ~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 5 FTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccccHHHHHHHHHH
Confidence 344444445554444444444433
No 489
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=24.18 E-value=1.1e+02 Score=33.30 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (721)
Q Consensus 642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~ 675 (721)
+-.|...-+.|..-+|+..|+.|+.|.|+.| +|.
T Consensus 23 ~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 23 YEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 3333444556788888888888888888888 776
No 490
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.42 E-value=1.4e+02 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLALECL 515 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~ 515 (721)
..+|..++..|++++|+..|-+||..-|+|..+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999987643
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.30 E-value=2e+02 Score=26.22 Aligned_cols=46 Identities=15% Similarity=-0.019 Sum_probs=35.3
Q ss_pred HHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Q 004984 404 HLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG 449 (721)
Q Consensus 404 ~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~ 449 (721)
+.++++=..+ ++-+++.+|.+|.+.|+.+.|.+.|+.--.+.|..|
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3455543332 556788999999999999999999998888888765
No 492
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=1e+03 Score=26.04 Aligned_cols=263 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc----------chhhHhhHHHHHHHhCCHHHHHHHHH------------------
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAG----------HIYSIAGLARLGYIKGHKLWAYEKLN------------------ 439 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~----------~~~A~~~lg~~~~~~G~~~~A~~~~~------------------ 439 (721)
.++.-....+++++|+..|.+.+..| ...+...++.+|...|++..=-....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Q ss_pred -HHHhcCCCcHHHHHHHhhcCCh------hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 004984 440 -SVISSVTPLGWMYQERSLYCEG------DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF---- 508 (721)
Q Consensus 440 -~aI~~~~~~~~ay~~rg~~~~~------~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l---- 508 (721)
..|+..|.....+-.+-..+.. .|....++.+++ ..|..++.+.|+|.+|++-++-.+.-
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le---------~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE---------CKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Q ss_pred --CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-HHHHhhhhcccc
Q 004984 509 --KLA-LECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIA-DCWLQLYDRWSS 583 (721)
Q Consensus 509 --~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-~~~~~l~~~~~~ 583 (721)
+|+ .+-+..-.-+|.+..+...+.+....|-. -+.-|-.-..++...-+-|-+-..-.++..| ..+...++.+..
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Q ss_pred ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 584 VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR-SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 584 ~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~-~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
.++.. |+..+.-+|=. -.-.+++..+-.-++.-- +++ .-.+-++.--.-++++.||... +|..|++.|
T Consensus 239 l~~d~kAc~sLkYmlLS----kIMlN~~~evk~vl~~K~-t~~~y~~r~I~am~avaea~~NRsL~-----df~~aL~qY 308 (421)
T COG5159 239 LKMDVKACVSLKYMLLS----KIMLNRREEVKAVLRNKN-TLKHYDDRMIRAMLAVAEAFGNRSLK-----DFSDALAQY 308 (421)
T ss_pred ccchHHHHHHHHHHHHH----HHHHhhHHHHHHHHccch-hHhhhhhhhHHHHHHHHHHhCCCcHh-----hHHHHHHHh
Q ss_pred HHHHhcCC
Q 004984 662 EESIQMKR 669 (721)
Q Consensus 662 e~Ai~i~~ 669 (721)
+.-+.-+|
T Consensus 309 ~~el~~D~ 316 (421)
T COG5159 309 SDELHQDS 316 (421)
T ss_pred hHHhccCH
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=3.1e+02 Score=32.48 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHh-cCCHHHHHHHHHH-----HHhcCCCHH
Q 004984 609 RQSLLLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYD-TSHCEEGLRKAEE-----SIQMKRSFE 672 (721)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~-~~ea~~~~G~~Ly~-~G~~deAl~~ye~-----Ai~i~~~~~ 672 (721)
+.=.-+.+-||+.-|.+.....+.++|. |+.+..++=-++.- -.+|+==+..++. -+..=|+|.
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~ 417 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG 417 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch
Confidence 3334456699999999999999999999 88776555444322 2333322333332 255667775
No 494
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=5.7e+02 Score=27.72 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhcCCh------------hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--CCHHHH
Q 004984 433 WAYEKLNSVISSVTPLGWMYQERSLYCEG------------DKRWEDLDKATALDPTLSYPYMYRASSLMTK--QNVEAA 498 (721)
Q Consensus 433 ~A~~~~~~aI~~~~~~~~ay~~rg~~~~~------------~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l--g~~~eA 498 (721)
.|++.-...|..+|..-..+.-|-.+... +.-+.-.+.++.-+|.+...|..|--++-.- .++.--
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHH------HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 499 LAEINRILGFKL-ALECLELRFCFF------LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 499 l~~~~kAL~l~P-~~~~~~~R~~~~------~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
+..-++.|..|| +...|+.|-+++ ..-.++..-.++=.-+|+-||-| -.|.+.+-.+....-+-...
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N------~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN------NSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC------hHHHHHHHHHHHHHHhhccc
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (721)
Q Consensus 572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~ 610 (721)
--+.-+-+. |..+-+++-.+|.+...|+..
T Consensus 204 isqk~l~~e---------L~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 204 ISQKYLEKE---------LEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred chHHHHHHH---------HHHHHhhhhcCccccchhhHH
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=8.4e+02 Score=26.67 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-------------CcHHHHHHH
Q 004984 397 KEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------------PLGWMYQER 455 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~--------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-------------~~~~ay~~r 455 (721)
+.-++-++-++++|+. ....|+.++|.-|.+.+|.+.+.+++.+..+... .+|..|..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 3344455555555543 1245677888888888888888887776555321 244444444
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 456 SLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILG 507 (721)
Q Consensus 456 g~~~~~~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~kAL~ 507 (721)
.-. ++.++..+-.|+---+.- ..-.+-|.-.+.-.++.||-.-+...+.
T Consensus 169 ~vV---~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 169 KVV---EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHH---HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 333 566666666666544432 1223356777777788888877777663
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.54 E-value=6e+02 Score=22.85 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH--HHHHHHhCC
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL--ARLGYIKGH 430 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~l--g~~~~~~G~ 430 (721)
+.......|......|++..|++...++-+..+.....++ +++-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3455567899999999999999999999777444444443 445555554
No 497
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.76 E-value=9.5e+02 Score=26.82 Aligned_cols=129 Identities=13% Similarity=0.021 Sum_probs=73.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 004984 373 LESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (721)
Q Consensus 373 v~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay 452 (721)
+.-.+......+.++.+|.-|....+++.|.--|++|.+.... |.-++ -.....|++.++++ ..+||.+...
T Consensus 115 ~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~------AKe~~-~~ei~ka~~e~ds~-k~~~N~~~~~ 186 (449)
T COG3014 115 RAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRR------AKEFY-YEEVQKAIKEIDSS-KHNINMERSR 186 (449)
T ss_pred hhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHhc-cCCCchhHHH
Confidence 3333444555677788999999999999999999998765211 10000 01122233333211 2356666555
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~--~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~ 511 (721)
.+-.+. .+.-..-|-+--+-+.++ +++=+.+|..+..-|++..+...++.+..+.|+
T Consensus 187 ae~s~~--i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 187 AEVSEI--LNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHH--HHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 443221 011111222222233333 444455788888888888999999998888886
No 498
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=20.74 E-value=1.1e+02 Score=34.88 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCC
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~ 686 (721)
|..+=.++.+.|..+.|++....-+--+|++-++..|+-|.--.+|.-+..+.+.|+ +..+++|.+|.-+.+.+-
T Consensus 136 y~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~DlE~-----~~~~~~Fir~v~~y~~~d 210 (471)
T KOG4459|consen 136 YQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELTDLER-----REHEQWFIRGVRLYSGED 210 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccccccccc-----chHHHHHHHHhhhccccC
Confidence 455677899999999999999999999999999999999888888888877765543 567799999999977664
Q ss_pred CCCchhhHHHHHHHhh
Q 004984 687 DSSCSSTVVSLLEDAL 702 (721)
Q Consensus 687 ~~~~~~~~~~~~~~~~ 702 (721)
+-.|-. .+|.||
T Consensus 211 ~~~~v~----~ve~AL 222 (471)
T KOG4459|consen 211 PRQCVP----EVELAL 222 (471)
T ss_pred chhcch----hHHHHH
Confidence 444433 566665
No 499
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=20.67 E-value=4.7e+02 Score=25.45 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-c------CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILG-F------KL-A-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l------~P-~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
......++-+++.|+.++|...++-+=. + =| . ......++..+...|++.+|...+..|+.
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4456678889999999999998876522 1 23 2 34456788889999999999998888873
Done!